Query 022885
Match_columns 290
No_of_seqs 197 out of 1270
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:51:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03006 carbonate dehydratase 100.0 3.5E-58 7.6E-63 429.1 21.0 238 46-290 35-301 (301)
2 PLN03014 carbonic anhydrase 100.0 1.8E-52 3.9E-57 395.6 22.5 227 41-273 78-333 (347)
3 PLN03019 carbonic anhydrase 100.0 3.6E-51 7.8E-56 385.1 22.9 223 44-273 76-327 (330)
4 PLN02154 carbonic anhydrase 100.0 1E-47 2.3E-52 356.9 22.4 206 75-290 57-290 (290)
5 PLN00416 carbonate dehydratase 100.0 5.9E-47 1.3E-51 349.0 23.0 222 43-273 3-254 (258)
6 PRK10437 carbonic anhydrase; P 100.0 1E-40 2.3E-45 301.2 19.7 169 98-271 4-198 (220)
7 PRK15219 carbonic anhydrase; P 100.0 3.6E-40 7.8E-45 302.1 19.7 169 90-264 52-244 (245)
8 cd00884 beta_CA_cladeB Carboni 100.0 2.7E-40 5.8E-45 292.9 17.5 159 105-264 2-190 (190)
9 cd00883 beta_CA_cladeA Carboni 100.0 3.8E-40 8.2E-45 289.9 17.6 154 106-264 2-182 (182)
10 KOG1578 Predicted carbonic anh 100.0 1.4E-38 3E-43 291.1 16.1 224 40-290 24-276 (276)
11 COG0288 CynT Carbonic anhydras 100.0 3.9E-37 8.5E-42 275.9 17.1 170 98-270 4-201 (207)
12 cd03378 beta_CA_cladeC Carboni 100.0 9.3E-35 2E-39 249.7 15.8 131 91-264 1-154 (154)
13 PF00484 Pro_CA: Carbonic anhy 100.0 1.6E-31 3.5E-36 227.1 15.5 127 131-261 1-153 (153)
14 cd00382 beta_CA Carbonic anhyd 100.0 1.3E-29 2.8E-34 209.0 12.6 94 127-264 1-119 (119)
15 cd03379 beta_CA_cladeD Carboni 99.9 7.2E-27 1.6E-31 198.0 8.6 119 127-264 1-142 (142)
16 KOG1578 Predicted carbonic anh 94.0 0.0079 1.7E-07 56.3 -1.9 131 121-251 20-234 (276)
17 TIGR01752 flav_long flavodoxin 57.0 13 0.00029 31.7 3.6 45 127-174 77-124 (167)
18 COG1254 AcyP Acylphosphatases 49.4 14 0.0003 29.4 2.2 25 246-270 29-53 (92)
19 PLN02475 5-methyltetrahydropte 47.9 93 0.002 33.7 8.8 68 129-199 286-357 (766)
20 PF07859 Abhydrolase_3: alpha/ 44.3 21 0.00045 30.6 2.8 46 133-178 31-89 (211)
21 PF05952 ComX: Bacillus compet 42.3 30 0.00065 25.3 2.9 25 228-252 5-29 (57)
22 PF00009 GTP_EFTU: Elongation 33.5 22 0.00048 30.4 1.3 14 159-172 3-16 (188)
23 PF00355 Rieske: Rieske [2Fe-2 29.7 19 0.00042 27.4 0.2 18 247-264 64-81 (97)
24 cd01891 TypA_BipA TypA (tyrosi 28.5 34 0.00073 29.3 1.6 14 159-172 2-15 (194)
25 COG1116 TauB ABC-type nitrate/ 28.0 33 0.00072 32.1 1.5 14 160-173 30-43 (248)
26 PRK03592 haloalkane dehalogena 27.3 57 0.0012 29.5 2.9 31 148-178 81-111 (295)
27 cd04160 Arfrp1 Arfrp1 subfamil 26.6 32 0.00069 28.1 1.0 13 161-173 1-13 (167)
28 cd01887 IF2_eIF5B IF2/eIF5B (i 26.4 37 0.00081 27.6 1.4 13 160-172 1-13 (168)
29 TIGR01250 pro_imino_pep_2 prol 26.4 66 0.0014 27.7 3.1 31 148-178 84-114 (288)
30 cd01878 HflX HflX subfamily. 25.5 43 0.00092 28.8 1.7 15 158-172 40-54 (204)
31 PRK08575 5-methyltetrahydropte 24.6 1.4E+02 0.0029 28.6 5.1 41 129-172 257-301 (326)
32 PF12697 Abhydrolase_6: Alpha/ 24.2 88 0.0019 25.5 3.3 31 147-177 53-83 (228)
33 cd01890 LepA LepA subfamily. 23.9 40 0.00087 27.9 1.2 13 160-172 1-13 (179)
34 PRK06233 hypothetical protein; 23.7 75 0.0016 31.0 3.2 43 129-173 297-343 (372)
35 cd03528 Rieske_RO_ferredoxin R 23.6 31 0.00068 26.3 0.4 16 247-262 60-75 (98)
36 TIGR03100 hydr1_PEP hydrolase, 23.6 86 0.0019 28.6 3.4 31 146-177 85-116 (274)
37 PLN02824 hydrolase, alpha/beta 23.4 73 0.0016 28.8 2.9 30 149-178 91-120 (294)
38 cd03478 Rieske_AIFL_N AIFL (ap 22.3 30 0.00065 26.5 0.1 16 247-262 59-74 (95)
39 PRK01207 methionine synthase; 21.8 1.4E+02 0.0031 29.2 4.6 45 127-173 269-318 (343)
40 cd01897 NOG NOG1 is a nucleola 21.1 56 0.0012 26.6 1.5 13 160-172 1-13 (168)
41 PRK14432 acylphosphatase; Prov 20.6 72 0.0016 25.1 1.9 21 246-266 27-47 (93)
42 PRK12359 flavodoxin FldB; Prov 20.6 1.2E+02 0.0026 26.5 3.5 46 127-175 78-126 (172)
43 cd04167 Snu114p Snu114p subfam 20.2 53 0.0011 28.8 1.2 13 160-172 1-13 (213)
44 PRK05222 5-methyltetrahydropte 20.2 4.9E+02 0.011 28.2 8.6 120 120-244 271-400 (758)
No 1
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=3.5e-58 Score=429.11 Aligned_cols=238 Identities=51% Similarity=0.892 Sum_probs=208.3
Q ss_pred hHHHHHhhhHhhhhcC-cccccccccccchhhhHHhhcccccCCCCcccHHHHHHHHHHHHHccccccchhcHHHHHhhh
Q 022885 46 IRDAQQGFTPVLKRRS-FSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLA 124 (290)
Q Consensus 46 ~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~lt~el~~~~~~~~~~~~~~~~~l~~~n~rf~~f~~~~~~~~~~~~~~La 124 (290)
..-++.+|-..+|++. +++.+|+ +|+++||+||+.... ++..+++.++++++||+.|+..++.+++++|++|+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~~~~~~----~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La 108 (301)
T PLN03006 35 LKTTQLRIPASFRRKATNLQVMAS--GKTPGLTQEANGVAI----DRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLA 108 (301)
T ss_pred cceeEecccccccccccchhhhhh--hchHHHHHHHhhccC----CCCCcccHHHHHHHHHHhchhhccccCHHHHHHhc
Confidence 3446778887777665 7789999 999999999986542 23457999999999999999999999999999999
Q ss_pred hcCCCcEEEEeecCCCCCC-----------------------C-----chhHHHHHHHHhcCccEEEEeccCcchHHHHH
Q 022885 125 KAQSPKFMVIACADSRNGP-----------------------S-----ETNAALEFAVNTLEVQNILVIGHSDCGGIQAL 176 (290)
Q Consensus 125 ~gQ~P~alVI~CsDSRv~p-----------------------~-----~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa 176 (290)
+||+|+++||+|||||+.| . ++.+||||||.+|||++|||||||+||||+|+
T Consensus 109 ~GQ~P~~lvI~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~d~~~~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa 188 (301)
T PLN03006 109 DAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTETKAALEFSVNTLNVENILVIGHSRCGGIQAL 188 (301)
T ss_pred cCCCCCEEEEEeccCCCCHHHHhCCCCCCEEEEeccccccCCccccccchhhhHHHHHHHhCCCEEEEecCCCchHHHHH
Confidence 9999999999999999421 1 36799999999999999999999999999999
Q ss_pred hhhccCCcchhhhHHHHHHhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCeEEEEEEEEc
Q 022885 177 MRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDL 256 (290)
Q Consensus 177 ~~~~~~~~~~~~~i~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~nL~~~P~I~~~v~~g~L~V~G~~YDi 256 (290)
++..+.+. ..++|+.|+..+++++...........++++++.|+++||++|++||++||+|++++++|+|+|||||||+
T Consensus 189 l~~~~~g~-~~~~I~~wv~~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi 267 (301)
T PLN03006 189 MKMEDEGD-SRSFIHNWVVVGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNF 267 (301)
T ss_pred hhccccCC-chhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEEC
Confidence 98765543 34899999999988876654332334677888899999999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCcCCcccCCccccccCCCCC
Q 022885 257 LNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS 290 (290)
Q Consensus 257 ~tG~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (290)
.||.|+.|.++|+.+.++.|+||+|++|||+|||
T Consensus 268 ~tG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (301)
T PLN03006 268 VDCTFEKWTVDYAASRGKKKEGSGIAVKDRSVWS 301 (301)
T ss_pred CCceEEEecccccccccccccCCceeeecccccC
Confidence 9999999999999999988899999999999998
No 2
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=1.8e-52 Score=395.65 Aligned_cols=227 Identities=36% Similarity=0.603 Sum_probs=197.0
Q ss_pred hhhhhhHHHHHhhhHhhhhcCcccccccccccchhhhHHhhcccccCCCCcccHHHHHHHHHHHHHccccccchhcHHHH
Q 022885 41 MKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHF 120 (290)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~lt~el~~~~~~~~~~~~~~~~~l~~~n~rf~~f~~~~~~~~~~~~ 120 (290)
|...-+++||++|.++|++|.+|+.+|+ +|++++|+||+..... ...++++|+++.+||.+|+...+.+++++|
T Consensus 78 m~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~----~~~~~~~lerL~~GN~rF~~~~~~~~~~~~ 151 (347)
T PLN03014 78 MGTEAYDEAIEALKKLLIEKEELKTVAA--AKVEQITAALQTGTSS----DKKAFDPVETIKQGFIKFKKEKYETNPALY 151 (347)
T ss_pred hchhhHHHHHHHHHhhcccccccchHHH--HhHHHHHHHHhcccCC----CCCCcCHHHHHHHHHHHHHhhccccCHHHH
Confidence 4444589999999999999999999999 9999999999964321 134577888888888888888888999999
Q ss_pred HhhhhcCCCcEEEEeecCCCCC-----------------------C------CchhHHHHHHHHhcCccEEEEeccCcch
Q 022885 121 QNLAKAQSPKFMVIACADSRNG-----------------------P------SETNAALEFAVNTLEVQNILVIGHSDCG 171 (290)
Q Consensus 121 ~~La~gQ~P~alVI~CsDSRv~-----------------------p------~~~~aSLEYAV~~L~V~~IVV~GHs~CG 171 (290)
++|++||+|+++||+|||||+. | +++.++|||||.+|+|++|||||||+||
T Consensus 152 ~~La~GQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CG 231 (347)
T PLN03014 152 GELAKGQSPKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACG 231 (347)
T ss_pred HhhccCCCCCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCch
Confidence 9999999999999999999942 1 1367999999999999999999999999
Q ss_pred HHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCeEEEE
Q 022885 172 GIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHG 251 (290)
Q Consensus 172 aV~Aa~~~~~~~~~~~~~i~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~nL~~~P~I~~~v~~g~L~V~G 251 (290)
||+|+++..+++....++|+.|+..++|++.+........+++++++.|+++||++||+||++||+|++++++|+|+|||
T Consensus 232 aV~Aa~~~~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~L~I~G 311 (347)
T PLN03014 232 GIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKG 311 (347)
T ss_pred HHHHHHhccccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEEE
Confidence 99999986544433347999999999999887665444557778888899999999999999999999999999999999
Q ss_pred EEEEcCCCeEEEEeccCCCCcC
Q 022885 252 GYYDLLNCTFEKWTLDYKGRKV 273 (290)
Q Consensus 252 ~~YDi~tG~ve~~~~~~~~~~~ 273 (290)
||||++||.|++|..++..++.
T Consensus 312 ~~YDi~TG~V~~l~~~~~~~~~ 333 (347)
T PLN03014 312 GYYDFVKGAFELWGLEFGLSET 333 (347)
T ss_pred EEEECCCceEEEeccccccCCc
Confidence 9999999999999999988765
No 3
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=3.6e-51 Score=385.06 Aligned_cols=223 Identities=38% Similarity=0.625 Sum_probs=193.1
Q ss_pred hhhHHHHHhhhHhhhhcCcccccccccccchhhhHHhhcccccCCCCcccHHHHHHHHHHHHHccccccchhcHHHHHhh
Q 022885 44 EKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNL 123 (290)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~lt~el~~~~~~~~~~~~~~~~~l~~~n~rf~~f~~~~~~~~~~~~~~L 123 (290)
.-+++||++|.++|++|++|+.+|+ +|+++||+||+..... ..+++++|+++.+||.+|+...+.+++++|+.|
T Consensus 76 ~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~l~~~~~~----~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~L 149 (330)
T PLN03019 76 ESYEDAIEALKKLLIEKDDLKDVAA--AKVKKITAELQAASSS----DSKSFDPVERIKEGFVTFKKEKYETNPALYGEL 149 (330)
T ss_pred hhHHHHHHHHHhhcccccccchHHH--HHHHHhhHHhhhccCC----CCchhHHHHHHHHHHHHHHhccccccHHHHHhh
Confidence 3589999999999999999999999 9999999999975321 135688888999999999988888999999999
Q ss_pred hhcCCCcEEEEeecCCCCC-----------------------CC------chhHHHHHHHHhcCccEEEEeccCcchHHH
Q 022885 124 AKAQSPKFMVIACADSRNG-----------------------PS------ETNAALEFAVNTLEVQNILVIGHSDCGGIQ 174 (290)
Q Consensus 124 a~gQ~P~alVI~CsDSRv~-----------------------p~------~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~ 174 (290)
++||+|+++||+|||||+. |. ++.++|||||.+|||++|||||||+||||+
T Consensus 150 a~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVk 229 (330)
T PLN03019 150 AKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIK 229 (330)
T ss_pred ccCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHH
Confidence 9999999999999999942 11 367999999999999999999999999999
Q ss_pred HHhhhccCCcchhhhHHHHHHhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCeEEEEEEE
Q 022885 175 ALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYY 254 (290)
Q Consensus 175 Aa~~~~~~~~~~~~~i~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~nL~~~P~I~~~v~~g~L~V~G~~Y 254 (290)
|+++...++....++|+.|++.+.|++.+........+++++++.|++ ||+.|++||+++|+|++++++|+|.||||+|
T Consensus 230 Aal~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~-NV~~qv~nL~t~P~V~e~v~~G~L~I~G~~Y 308 (330)
T PLN03019 230 GLMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCER-AVNVSLANLLTYPFVREGVVKGTLALKGGYY 308 (330)
T ss_pred HHHhccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHHHHHhCHHHHHHHHcCCcEEEEEEE
Confidence 999865444333479999999999998765443333466677667776 9999999999999999999999999999999
Q ss_pred EcCCCeEEEEeccCCCCcC
Q 022885 255 DLLNCTFEKWTLDYKGRKV 273 (290)
Q Consensus 255 Di~tG~ve~~~~~~~~~~~ 273 (290)
|++||.|++|..+|+.++.
T Consensus 309 Dl~TG~V~~~~~~~~~~~~ 327 (330)
T PLN03019 309 DFVNGSFELWELQFGISPV 327 (330)
T ss_pred ECCCceEEEEccccCcCCC
Confidence 9999999999999998764
No 4
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=1e-47 Score=356.89 Aligned_cols=206 Identities=50% Similarity=0.901 Sum_probs=174.3
Q ss_pred hhhHHhhcccccCCCCcccHHHHHHHHHHHHHccccccchhcHHHHHhhhhcCCCcEEEEeecCCCCCC-----------
Q 022885 75 ALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGP----------- 143 (290)
Q Consensus 75 ~lt~el~~~~~~~~~~~~~~~~~l~~~n~rf~~f~~~~~~~~~~~~~~La~gQ~P~alVI~CsDSRv~p----------- 143 (290)
+++.+|.... .++.++++.|++|++||.+|+..++.+++++|+.|+.||+|+++||+|||||+.|
T Consensus 57 ~~~~~~~~~~----~~~~~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdl 132 (290)
T PLN02154 57 GIREEFMDLN----RETETSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEA 132 (290)
T ss_pred hhhHHHHhcc----cCcchhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCE
Confidence 3555665543 2568899999999999999999999999999999999999999999999999421
Q ss_pred -----------------CchhHHHHHHHHhcCccEEEEeccCcchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHh
Q 022885 144 -----------------SETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKA 206 (290)
Q Consensus 144 -----------------~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~~~~~~~~~~~i~~wl~~i~pa~~~~~~ 206 (290)
.++.++|||||.+|+|++|||||||+||||+|+++.........++++.|+..++++..+...
T Consensus 133 FvvRN~GNiv~~~~~g~~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~ 212 (290)
T PLN02154 133 FTIRNVANLVTPVQNGPTETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQL 212 (290)
T ss_pred EEEeccCCccCCccCCccchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhh
Confidence 146789999999999999999999999999999975322122237999999988877654332
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCeEEEEEEEEcCCCeEEEEeccCCCCcCCcccCCccccccC
Q 022885 207 YTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDH 286 (290)
Q Consensus 207 ~~~~~~~~~~~~~~~~~nV~~qv~nL~~~P~I~~~v~~g~L~V~G~~YDi~tG~ve~~~~~~~~~~~~~~~~~~~~~~~~ 286 (290)
..+..++++.++.++++||+.|++||++||+|++++++|+|+||||+||++||.|+.|..+++ +-|+.|++|||
T Consensus 213 ~~~~~~~~~~~~~~e~~NV~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~------~f~~~~~~~~~ 286 (290)
T PLN02154 213 ASSHLSFDEQCRNCEKESIKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSD------KTNYGFYISDR 286 (290)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccC------cccCceeeccc
Confidence 222345677778899999999999999999999999999999999999999999999998775 47888999999
Q ss_pred CCCC
Q 022885 287 SFWS 290 (290)
Q Consensus 287 ~~~~ 290 (290)
+|||
T Consensus 287 ~~~~ 290 (290)
T PLN02154 287 EIWS 290 (290)
T ss_pred cccC
Confidence 9998
No 5
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=5.9e-47 Score=349.00 Aligned_cols=222 Identities=37% Similarity=0.639 Sum_probs=185.8
Q ss_pred hhhhHHHHHhhhHhhhhcCcccccccccccchhhhHHhhcccccCCCCcccHHHHHHHHHHHHHccccccchhcHHHHHh
Q 022885 43 LEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQN 122 (290)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~lt~el~~~~~~~~~~~~~~~~~l~~~n~rf~~f~~~~~~~~~~~~~~ 122 (290)
++.+++++.+|.++++.++.++.+++ ++...++..|+... .+|+++++.|.++|+||+... +.+++++|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~al~~Ll~Gn~rF~~~~---~~~~~~~~~~ 73 (258)
T PLN00416 3 TESYEAAIKGLNDLLSTKADLGNVAA--AKIKALTAELKELD----SSNSDAIERIKTGFTQFKTEK---YLKNSTLFNH 73 (258)
T ss_pred cccHHHHHHHHHhhcccccccchHHH--HhHHHHHHHHHHhh----cCHHHHHHHHHHHHHHHHhcc---cccCHHHHHh
Confidence 34578999999999999999999999 99999999999874 245666666666666666554 4567899999
Q ss_pred hhhcCCCcEEEEeecCCCCC-----------------------C------CchhHHHHHHHHhcCccEEEEeccCcchHH
Q 022885 123 LAKAQSPKFMVIACADSRNG-----------------------P------SETNAALEFAVNTLEVQNILVIGHSDCGGI 173 (290)
Q Consensus 123 La~gQ~P~alVI~CsDSRv~-----------------------p------~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV 173 (290)
++.||+|+++||||||||+. | +++.+||||||.+|||++|||||||+||||
T Consensus 74 la~gQ~P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV 153 (258)
T PLN00416 74 LAKTQTPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGI 153 (258)
T ss_pred hccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHH
Confidence 99999999999999999942 1 146799999999999999999999999999
Q ss_pred HHHhhhccCC-cchhhhHHHHHHhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCeEEEEE
Q 022885 174 QALMRMQDDV-DSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGG 252 (290)
Q Consensus 174 ~Aa~~~~~~~-~~~~~~i~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~nL~~~P~I~~~v~~g~L~V~G~ 252 (290)
+|+++..+.. ....++|..|+..+.|++..........++.++++.++++||++|+++|++||+|++++++|+|.||||
T Consensus 154 ~Aa~~~~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~G~ 233 (258)
T PLN00416 154 KGLMSIEDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIRGG 233 (258)
T ss_pred HHHHhccccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEE
Confidence 9998743221 111368999999999988765433334456666778889999999999999999999999999999999
Q ss_pred EEEcCCCeEEEEeccCCCCcC
Q 022885 253 YYDLLNCTFEKWTLDYKGRKV 273 (290)
Q Consensus 253 ~YDi~tG~ve~~~~~~~~~~~ 273 (290)
+||++||+|+++.++++.++.
T Consensus 234 ~Ydl~TG~v~~~~~~~~~~p~ 254 (258)
T PLN00416 234 HYNFVKGTFDLWELDFKTTPA 254 (258)
T ss_pred EEECCCceEEEeccCcCCCCC
Confidence 999999999999999988775
No 6
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=1e-40 Score=301.22 Aligned_cols=169 Identities=22% Similarity=0.412 Sum_probs=143.0
Q ss_pred HHHHHHHHHccccccchhcHHHHHhhhhcCCCcEEEEeecCCCCCC-------------------------CchhHHHHH
Q 022885 98 FEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGP-------------------------SETNAALEF 152 (290)
Q Consensus 98 l~~~n~rf~~f~~~~~~~~~~~~~~La~gQ~P~alVI~CsDSRv~p-------------------------~~~~aSLEY 152 (290)
++++++||..|....+..++++|+.++.+|+|+++||||||||+.| .++.++|||
T Consensus 4 ~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~ley 83 (220)
T PRK10437 4 IDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQY 83 (220)
T ss_pred HHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCcchHHHHHH
Confidence 4556666666666656678899999999999999999999999422 246899999
Q ss_pred HHHhcCccEEEEeccCcchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHH
Q 022885 153 AVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNL 232 (290)
Q Consensus 153 AV~~L~V~~IVV~GHs~CGaV~Aa~~~~~~~~~~~~~i~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~nL 232 (290)
||.+|||++|||||||+||||+|+++... .+++..|+..++|++..........+.++.++.+++.||+.|+++|
T Consensus 84 AV~~L~v~~IvV~GHt~CG~V~Aal~~~~-----~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~~qv~~L 158 (220)
T PRK10437 84 AVDVLEVEHIIICGHYGCGGVQAAVENPE-----LGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYNL 158 (220)
T ss_pred HHHHcCCCEEEEeCCCCchHHHHHHcCCC-----cccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999996432 2789999999999887654433344556678889999999999999
Q ss_pred hcCHHHHHHHhCC-CeEEEEEEEEcCCCeEEEEeccCCCC
Q 022885 233 LTYPWIEERVRKE-LLFIHGGYYDLLNCTFEKWTLDYKGR 271 (290)
Q Consensus 233 ~~~P~I~~~v~~g-~L~V~G~~YDi~tG~ve~~~~~~~~~ 271 (290)
+++|+|++++++| +|+||||+||++||+|+.+..+....
T Consensus 159 ~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~~ 198 (220)
T PRK10437 159 GHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNR 198 (220)
T ss_pred hhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCch
Confidence 9999999999999 69999999999999999999877653
No 7
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=3.6e-40 Score=302.07 Aligned_cols=169 Identities=19% Similarity=0.245 Sum_probs=137.6
Q ss_pred CcccHHHHHHHHHHHHHccccccchhcHHHHHhhhhcCCCcEEEEeecCCCCCC----------------------Cchh
Q 022885 90 KSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGP----------------------SETN 147 (290)
Q Consensus 90 ~~~~~~~~l~~~n~rf~~f~~~~~~~~~~~~~~La~gQ~P~alVI~CsDSRv~p----------------------~~~~ 147 (290)
+|+++++.|.++|+||+.....++ .....+.++++||+|+++||+|||||+.| +++.
T Consensus 52 ~p~~al~~L~~GN~rF~~~~~~~~-~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~~~~ 130 (245)
T PRK15219 52 TPDQIIESLKQGNKRFRSGKPAQH-DYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISNDDLL 130 (245)
T ss_pred CHHHHHHHHHHHHHHHHhcCcCCc-hhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCcchh
Confidence 467788888888888888765432 22223345789999999999999999532 3478
Q ss_pred HHHHHHHHhcCccEEEEeccCcchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHhhh-cCCChHHHHHHHHHHHHH
Q 022885 148 AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYT-AHLSFDQQCRHCEKESIS 226 (290)
Q Consensus 148 aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~~~~~~~~~~~i~~wl~~i~pa~~~~~~~~-~~~~~~~~~~~~~~~nV~ 226 (290)
+||||||.+|||++|||||||+||||+|+++... .++|..||+.++|++....... ...+.++.++.++++||+
T Consensus 131 ~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~-----~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~~~~~NV~ 205 (245)
T PRK15219 131 GSMEFACAVAGAKVVLVMGHTACGAVKGAIDNVE-----LGNLTGLLDRIKPAIEVTEFDGERSSKNYKFVDAVARKNVE 205 (245)
T ss_pred hHHHHHHHHcCCCEEEEecCCcchHHHHHHhcCC-----cchHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997532 2789999999999987653211 112344567788999999
Q ss_pred HHHHHHhc-CHHHHHHHhCCCeEEEEEEEEcCCCeEEEE
Q 022885 227 RSILNLLT-YPWIEERVRKELLFIHGGYYDLLNCTFEKW 264 (290)
Q Consensus 227 ~qv~nL~~-~P~I~~~v~~g~L~V~G~~YDi~tG~ve~~ 264 (290)
.|+++|++ +|++++++++|+|+||||+||++||+|+++
T Consensus 206 ~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 206 LTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 99999985 899999999999999999999999999986
No 8
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2.7e-40 Score=292.89 Aligned_cols=159 Identities=44% Similarity=0.679 Sum_probs=133.1
Q ss_pred HHccccccchhcHHHHHhhhhcCCCcEEEEeecCCCCCC------------------------------CchhHHHHHHH
Q 022885 105 FLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGP------------------------------SETNAALEFAV 154 (290)
Q Consensus 105 f~~f~~~~~~~~~~~~~~La~gQ~P~alVI~CsDSRv~p------------------------------~~~~aSLEYAV 154 (290)
|.+|....+.+++++|++|+.||+|+++||||||||+.| .++.++|||||
T Consensus 2 ~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleyav 81 (190)
T cd00884 2 FRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYAV 81 (190)
T ss_pred hHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHHH
Confidence 344444556678899999999999999999999999421 13679999999
Q ss_pred HhcCccEEEEeccCcchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhc
Q 022885 155 NTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLT 234 (290)
Q Consensus 155 ~~L~V~~IVV~GHs~CGaV~Aa~~~~~~~~~~~~~i~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~nL~~ 234 (290)
.+|+|++|||||||+||||+|+++... .....++|..|+..+.|++..........+..+..+++++.||++|+++|++
T Consensus 82 ~~l~v~~ivV~GH~~Cgav~Aa~~~~~-~~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~~ 160 (190)
T cd00884 82 AVLKVEHIVVCGHSDCGGIRALLSPED-LLDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLLT 160 (190)
T ss_pred HHhCCCEEEEeCCCcchHHHHHhcccc-ccCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999987543 1222479999999999988765543333455666788999999999999999
Q ss_pred CHHHHHHHhCCCeEEEEEEEEcCCCeEEEE
Q 022885 235 YPWIEERVRKELLFIHGGYYDLLNCTFEKW 264 (290)
Q Consensus 235 ~P~I~~~v~~g~L~V~G~~YDi~tG~ve~~ 264 (290)
+|+|++++++|+|+||||+||+.||+|+.+
T Consensus 161 ~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 161 YPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred CHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 999999999999999999999999999864
No 9
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=3.8e-40 Score=289.92 Aligned_cols=154 Identities=25% Similarity=0.436 Sum_probs=129.3
Q ss_pred HccccccchhcHHHHHhhhhcCCCcEEEEeecCCCCCC-------------------------CchhHHHHHHHHhcCcc
Q 022885 106 LSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGP-------------------------SETNAALEFAVNTLEVQ 160 (290)
Q Consensus 106 ~~f~~~~~~~~~~~~~~La~gQ~P~alVI~CsDSRv~p-------------------------~~~~aSLEYAV~~L~V~ 160 (290)
.+|....+...+++|+.++.||+|+++||||||||+.| .++.+||||||.+|||+
T Consensus 2 ~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~~~~asleyAv~~L~v~ 81 (182)
T cd00883 2 RAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDLNCLSVLQYAVDVLKVK 81 (182)
T ss_pred hhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCcchhhhHHHHHHhcCCC
Confidence 34555556788999999999999999999999999422 24789999999999999
Q ss_pred EEEEeccCcchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHhhhcC-CChHHHHHHHHHHHHHHHHHHHhcCHHHH
Q 022885 161 NILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAH-LSFDQQCRHCEKESISRSILNLLTYPWIE 239 (290)
Q Consensus 161 ~IVV~GHs~CGaV~Aa~~~~~~~~~~~~~i~~wl~~i~pa~~~~~~~~~~-~~~~~~~~~~~~~nV~~qv~nL~~~P~I~ 239 (290)
+|||||||+||||+|+++.. ..+++..|+..+++++......... .+.++..+.++++||++|+++|++||+|+
T Consensus 82 ~IvV~GHs~CGav~a~~~~~-----~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~ 156 (182)
T cd00883 82 HIIVCGHYGCGGVKAALTGK-----RLGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCKTPIVQ 156 (182)
T ss_pred EEEEecCCCchHHHHHHcCC-----CCccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 99999999999999998753 1278999999999876543322212 24456677899999999999999999999
Q ss_pred HHHhC-CCeEEEEEEEEcCCCeEEEE
Q 022885 240 ERVRK-ELLFIHGGYYDLLNCTFEKW 264 (290)
Q Consensus 240 ~~v~~-g~L~V~G~~YDi~tG~ve~~ 264 (290)
+++++ |+|.||||+||++||+|+.+
T Consensus 157 ~~~~~~~~l~I~G~~ydi~tG~v~~~ 182 (182)
T cd00883 157 DAWKRGQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred HHHHcCCCeEEEEEEEEcCccEEEeC
Confidence 99999 89999999999999999864
No 10
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-38 Score=291.06 Aligned_cols=224 Identities=36% Similarity=0.567 Sum_probs=196.9
Q ss_pred hhhhhhhHHHHHhhhHhhhhcCcccccccccccchhhhHHhhcccccCCCCcccHHHHHHHHHHHHHccccccchhcHHH
Q 022885 40 TMKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEH 119 (290)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~lt~el~~~~~~~~~~~~~~~~~l~~~n~rf~~f~~~~~~~~~~~ 119 (290)
.|....++.++..+..+|..+..+ +|+ +++.++|++ .+.++++.++|+.|+.+.+..+|..
T Consensus 24 ~mp~~~~~~~~~~dsrml~~r~~~--~~~--~~~~~~~~~---------------~~~~~~i~~~Fv~~~~~~~~~~p~~ 84 (276)
T KOG1578|consen 24 DMPSPTAVMFTCMDSRMLPTRYNL--VAA--AKIKKLTAE---------------FDTLEDIGDMFVVRNSGNYIPNPTL 84 (276)
T ss_pred hCCCHHHHHHHHHHhhccchhhhh--hhh--hhhhhhhhc---------------cchHHHHHhhHhhhccccCCCChhh
Confidence 344555677888888999998888 788 999999983 3678899999999999999999999
Q ss_pred HHhhhhcCCCcEEEEeecCCCCC-----------------------------CCchhHHHHHHHHhcCccEEEEeccCcc
Q 022885 120 FQNLAKAQSPKFMVIACADSRNG-----------------------------PSETNAALEFAVNTLEVQNILVIGHSDC 170 (290)
Q Consensus 120 ~~~La~gQ~P~alVI~CsDSRv~-----------------------------p~~~~aSLEYAV~~L~V~~IVV~GHs~C 170 (290)
|.+++++|+|+.+||+|||||+. |.+++++|||||.+|+|++|+||||++|
T Consensus 85 f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ghs~c 164 (276)
T KOG1578|consen 85 FGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVIGHSLC 164 (276)
T ss_pred hHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEeccccC
Confidence 99999999999999999999942 2347899999999999999999999999
Q ss_pred hHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCeEEE
Q 022885 171 GGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIH 250 (290)
Q Consensus 171 GaV~Aa~~~~~~~~~~~~~i~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~nL~~~P~I~~~v~~g~L~V~ 250 (290)
|||+++|....++. ..+|+..|+-...+++..++.....+.+++||.+|+.+.++.++.+|.+||++++++..|.+++|
T Consensus 165 gGik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~l~~~ 243 (276)
T KOG1578|consen 165 GGIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGFLQVH 243 (276)
T ss_pred CchhhcccccccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcceeee
Confidence 99999999877655 45899999998888888887777778999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCeEEEEeccCCCCcCCcccCCccccccCCCCC
Q 022885 251 GGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS 290 (290)
Q Consensus 251 G~~YDi~tG~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (290)
|++|||.+|.+++|.+| |+.+..+.+..+.+|+
T Consensus 244 G~~Y~fskg~~~~~~ld-------ekt~~~~~~~~~~~~s 276 (276)
T KOG1578|consen 244 GGYYNFSKGTKEFWELD-------EKTVDGLKTEKRSVYS 276 (276)
T ss_pred eeeEEeccCceeEEEec-------cccccccccccccccC
Confidence 99999999999999999 1344557777777774
No 11
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-37 Score=275.92 Aligned_cols=170 Identities=24% Similarity=0.401 Sum_probs=134.6
Q ss_pred HHHHHHHHHccccccchhcHHHHHhhh-hcCCCcEEEEeecCCCCC-----------------------C--CchhHHHH
Q 022885 98 FEEMKQRFLSFKKNKYFEELEHFQNLA-KAQSPKFMVIACADSRNG-----------------------P--SETNAALE 151 (290)
Q Consensus 98 l~~~n~rf~~f~~~~~~~~~~~~~~La-~gQ~P~alVI~CsDSRv~-----------------------p--~~~~aSLE 151 (290)
+++++++|.+|....++..+.+|+.|+ .+|+|+++||||||||+. | +++++|||
T Consensus 4 ~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~~~~l~sle 83 (207)
T COG0288 4 LKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPDGSVLRSLE 83 (207)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCccchhHHHH
Confidence 444555555555544667888898876 559999999999999941 1 46899999
Q ss_pred HHHHhcCccEEEEeccCcchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHhhhcCCChH-HHHHHHHHHHHHHHHH
Q 022885 152 FAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFD-QQCRHCEKESISRSIL 230 (290)
Q Consensus 152 YAV~~L~V~~IVV~GHs~CGaV~Aa~~~~~~~~~~~~~i~~wl~~i~pa~~~~~~~~~~~~~~-~~~~~~~~~nV~~qv~ 230 (290)
|||.+|||++|||||||+||||+|+++....+.+ ++..|+.++.+............... ++....++.||+.|++
T Consensus 84 yAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~nV~~qv~ 160 (207)
T COG0288 84 YAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDNVREQVA 160 (207)
T ss_pred HHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999886654322 59999988888765544322221222 4556778899999999
Q ss_pred HHhcCHHHHHHHhCCC-eEEEEEEEEcCCCeEEEEeccCCC
Q 022885 231 NLLTYPWIEERVRKEL-LFIHGGYYDLLNCTFEKWTLDYKG 270 (290)
Q Consensus 231 nL~~~P~I~~~v~~g~-L~V~G~~YDi~tG~ve~~~~~~~~ 270 (290)
+|+++|.|++++..|+ |.||||+||++||+++.+......
T Consensus 161 ~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~ 201 (207)
T COG0288 161 NLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATID 201 (207)
T ss_pred HHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEeccccc
Confidence 9999999999988887 999999999999999998876654
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=9.3e-35 Score=249.73 Aligned_cols=131 Identities=31% Similarity=0.446 Sum_probs=113.9
Q ss_pred cccHHHHHHHHHHHHHccccccchhcHHHHHhhhhcCCCcEEEEeecCCCCCC----------------------CchhH
Q 022885 91 SCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGP----------------------SETNA 148 (290)
Q Consensus 91 ~~~~~~~l~~~n~rf~~f~~~~~~~~~~~~~~La~gQ~P~alVI~CsDSRv~p----------------------~~~~a 148 (290)
|+++++.|.++|++|.......+..+++.|..++++|+|+++||+|||||+.| .++.+
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~~~~~ 80 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDDDVLG 80 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccChhHHH
Confidence 46778888888888887654444445778999999999999999999999421 24689
Q ss_pred HHHHHHHhcCccEEEEeccCcchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 022885 149 ALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRS 228 (290)
Q Consensus 149 SLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~~~~~~~~~~~i~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~q 228 (290)
|||||+.+|||++|||||||+||+++++ ++++||+.|
T Consensus 81 sl~yav~~l~v~~IvV~GHt~CG~~~a~-------------------------------------------~~~~nV~~~ 117 (154)
T cd03378 81 SLEYAVEVLGVPLVVVLGHESCGAVAAA-------------------------------------------AVRANVKAT 117 (154)
T ss_pred HHHHHHHHhCCCEEEEEcCCCccHHHHH-------------------------------------------HHHHHHHHH
Confidence 9999999999999999999999999976 257899999
Q ss_pred HHHHhcCHHHHH-HHhCCCeEEEEEEEEcCCCeEEEE
Q 022885 229 ILNLLTYPWIEE-RVRKELLFIHGGYYDLLNCTFEKW 264 (290)
Q Consensus 229 v~nL~~~P~I~~-~v~~g~L~V~G~~YDi~tG~ve~~ 264 (290)
+++|+++|+|++ ++++|++.||||+||++||+++++
T Consensus 118 v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~~ 154 (154)
T cd03378 118 VAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEFL 154 (154)
T ss_pred HHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEeC
Confidence 999999999888 999999999999999999999874
No 13
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=99.97 E-value=1.6e-31 Score=227.09 Aligned_cols=127 Identities=29% Similarity=0.462 Sum_probs=101.5
Q ss_pred EEEEeecCCCCCC-------------------------CchhHHHHHHHHhcCccEEEEeccCcchHHHHHhhhccCCcc
Q 022885 131 FMVIACADSRNGP-------------------------SETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDS 185 (290)
Q Consensus 131 alVI~CsDSRv~p-------------------------~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~~~~~~~ 185 (290)
++||||||||+.| .++.+|||||+.+|||++|||||||+|||+++++....
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~---- 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPDDSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE---- 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT-HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH----
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccccchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc----
Confidence 6899999999421 23589999999999999999999999999999887422
Q ss_pred hhhhHHHHHHhhHHHHHH-HHhhhcCCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCeEEEEEEEEcCCCeE
Q 022885 186 RQSLTENWVVNAKVAKFR-TKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTF 261 (290)
Q Consensus 186 ~~~~i~~wl~~i~pa~~~-~~~~~~~~~~~~~~~~~~~~nV~~qv~nL~~~P~I~~~v~~g~L~V~G~~YDi~tG~v 261 (290)
..+++..|++.+.|+... ...........+....++++||++|+++|+++|+|++++++|++.|||++||++||+|
T Consensus 77 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~v 153 (153)
T PF00484_consen 77 EDGFLRDWLQKIRPALEECVDELLPSSWDFEDLDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGKV 153 (153)
T ss_dssp TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTEE
T ss_pred ccchHHHHHHhhhhhHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCccC
Confidence 237999999999998776 3322111222223344589999999999999999999999999999999999999986
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.96 E-value=1.3e-29 Score=209.01 Aligned_cols=94 Identities=39% Similarity=0.652 Sum_probs=86.6
Q ss_pred CCCcEEEEeecCCCCCC-------------------------CchhHHHHHHHHhcCccEEEEeccCcchHHHHHhhhcc
Q 022885 127 QSPKFMVIACADSRNGP-------------------------SETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQD 181 (290)
Q Consensus 127 Q~P~alVI~CsDSRv~p-------------------------~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~~~ 181 (290)
|+|+++||||||||+.| +++.+|||||+.+||+++|+|||||+|||+++
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~~~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a------ 74 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYDLDVLASLEYAVEVLGVKHIIVCGHTDCGAVKA------ 74 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCcccHHHHHHHHHHhhCCCEEEEEccCCCcHHHH------
Confidence 89999999999999421 25789999999999999999999999999986
Q ss_pred CCcchhhhHHHHHHhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCeEEEEEEEEcCCCeE
Q 022885 182 DVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTF 261 (290)
Q Consensus 182 ~~~~~~~~i~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~nL~~~P~I~~~v~~g~L~V~G~~YDi~tG~v 261 (290)
++++||++|+++|+++|+|+++++.+++.|||++||++||++
T Consensus 75 --------------------------------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~tG~v 116 (119)
T cd00382 75 --------------------------------------LVEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIETGKL 116 (119)
T ss_pred --------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECCCCEE
Confidence 257899999999999999999999999999999999999999
Q ss_pred EEE
Q 022885 262 EKW 264 (290)
Q Consensus 262 e~~ 264 (290)
+++
T Consensus 117 ~~~ 119 (119)
T cd00382 117 EVL 119 (119)
T ss_pred EeC
Confidence 875
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.94 E-value=7.2e-27 Score=198.01 Aligned_cols=119 Identities=20% Similarity=0.278 Sum_probs=88.5
Q ss_pred CCCcEEEEeecCCCCCC----------------------CchhHHHHHHHHhcCccEEEEeccCcchHHHHHhhhccCCc
Q 022885 127 QSPKFMVIACADSRNGP----------------------SETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVD 184 (290)
Q Consensus 127 Q~P~alVI~CsDSRv~p----------------------~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~~~~~~ 184 (290)
++++++||+|||||+.| .++.+|||||+.+||+++|+|||||+|||++++.+.
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~~~----- 75 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTDDAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTDEE----- 75 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCHhHHHHHHHHHHHhCCCEEEEEeecCCcceEecHHH-----
Confidence 46899999999999522 257899999999999999999999999999987542
Q ss_pred chhhhHHHHHHh-hHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCeEEEEEEEEcCCCeEEE
Q 022885 185 SRQSLTENWVVN-AKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEK 263 (290)
Q Consensus 185 ~~~~~i~~wl~~-i~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~nL~~~P~I~~~v~~g~L~V~G~~YDi~tG~ve~ 263 (290)
+..|+.. ..+.. .... ...........+++||++|+++|+++|+|++ +++||||+||++||+++.
T Consensus 76 -----~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~-----~i~V~G~~ydi~tG~v~~ 141 (142)
T cd03379 76 -----LKEKMKERGIAEA-YGGI---DKEFWFLGFDDLEESVREDVERIRNHPLIPD-----DVPVHGYVYDVKTGKLTE 141 (142)
T ss_pred -----HHHHHHHhcCcch-hccc---CcchhhcccccHHHHHHHHHHHHHhCcCccC-----CCEEEEEEEECCCCEEEe
Confidence 3445543 11110 0000 0111111223578999999999999999985 899999999999999986
Q ss_pred E
Q 022885 264 W 264 (290)
Q Consensus 264 ~ 264 (290)
+
T Consensus 142 v 142 (142)
T cd03379 142 V 142 (142)
T ss_pred C
Confidence 3
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=94.00 E-value=0.0079 Score=56.34 Aligned_cols=131 Identities=19% Similarity=0.214 Sum_probs=81.3
Q ss_pred HhhhhcCCCcEEEEeecCCCCCC--------------------------------------------------CchhHHH
Q 022885 121 QNLAKAQSPKFMVIACADSRNGP--------------------------------------------------SETNAAL 150 (290)
Q Consensus 121 ~~La~gQ~P~alVI~CsDSRv~p--------------------------------------------------~~~~aSL 150 (290)
.++.+-++|.+..++|+|||.-| +--..+|
T Consensus 20 ~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~~~p~~f~~~~~~qsp~~l~i 99 (276)
T KOG1578|consen 20 EEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYIPNPTLFGALAKSQSPEPLAL 99 (276)
T ss_pred HHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCCCChhhhHHHhccCCCcceEE
Confidence 56667899999999999999110 0123567
Q ss_pred HHHHHhcCccEEEEeccCcchHHHHHhhhccCC--cch---hhhHHHHHHhhHHHHHHHH---------h------hhcC
Q 022885 151 EFAVNTLEVQNILVIGHSDCGGIQALMRMQDDV--DSR---QSLTENWVVNAKVAKFRTK---------A------YTAH 210 (290)
Q Consensus 151 EYAV~~L~V~~IVV~GHs~CGaV~Aa~~~~~~~--~~~---~~~i~~wl~~i~pa~~~~~---------~------~~~~ 210 (290)
+-|+..-...||+||||++|=+|....+..... ..+ -+.++.||....-.-..+. . ....
T Consensus 100 ~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ghs~cgGik~~m~~~~~~~~ 179 (276)
T KOG1578|consen 100 ECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVIGHSLCGGIKGLMSFSLEAPS 179 (276)
T ss_pred EeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEeccccCCchhhcccccccCcc
Confidence 777788889999999999999999876654311 111 1578999876432110000 0 0000
Q ss_pred CChH---------HH---HHHHHHHHHHHHHHHHhcCHHHH--HHHhCCCeEEEE
Q 022885 211 LSFD---------QQ---CRHCEKESISRSILNLLTYPWIE--ERVRKELLFIHG 251 (290)
Q Consensus 211 ~~~~---------~~---~~~~~~~nV~~qv~nL~~~P~I~--~~v~~g~L~V~G 251 (290)
.+|. +. .+.+...|..+|..|..++.+.. ..+....+.+++
T Consensus 180 ~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~ 234 (276)
T KOG1578|consen 180 RSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREA 234 (276)
T ss_pred hhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 1111 11 12345678899999998877766 445555555555
No 17
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=57.05 E-value=13 Score=31.74 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=28.3
Q ss_pred CCCcEEEEeecCCCCCCC---chhHHHHHHHHhcCccEEEEeccCcchHHH
Q 022885 127 QSPKFMVIACADSRNGPS---ETNAALEFAVNTLEVQNILVIGHSDCGGIQ 174 (290)
Q Consensus 127 Q~P~alVI~CsDSRv~p~---~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~ 174 (290)
+..++.+|+|.|+..-+. +...-|.-.+..+|. .++|...|-|-.
T Consensus 77 ~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~---~~ig~~~~~gy~ 124 (167)
T TIGR01752 77 TGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGA---KVVGFWPTDGYH 124 (167)
T ss_pred CCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCC---eEEceecCCCcc
Confidence 456788999999874332 223344434444444 477889888754
No 18
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=49.36 E-value=14 Score=29.35 Aligned_cols=25 Identities=16% Similarity=-0.052 Sum_probs=21.5
Q ss_pred CeEEEEEEEEcCCCeEEEEeccCCC
Q 022885 246 LLFIHGGYYDLLNCTFEKWTLDYKG 270 (290)
Q Consensus 246 ~L~V~G~~YDi~tG~ve~~~~~~~~ 270 (290)
+|.|+||+++..+|.|+.+-...+.
T Consensus 29 ~lgl~G~V~N~~DGsVeiva~G~~~ 53 (92)
T COG1254 29 RLGLTGWVKNLDDGSVEIVAEGPDE 53 (92)
T ss_pred HCCCEEEEEECCCCeEEEEEEcCHH
Confidence 5779999999999999998876654
No 19
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=47.95 E-value=93 Score=33.68 Aligned_cols=68 Identities=15% Similarity=0.311 Sum_probs=46.8
Q ss_pred CcEEEEeecCCCC----CCCchhHHHHHHHHhcCccEEEEeccCcchHHHHHhhhccCCcchhhhHHHHHHhhHH
Q 022885 129 PKFMVIACADSRN----GPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKV 199 (290)
Q Consensus 129 P~alVI~CsDSRv----~p~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~~~~~~~~~~~i~~wl~~i~p 199 (290)
.+.+.+||.|.|. .+..+..-|+.+...++-+.|+| .++||..+--.+..... .-++.+.+|+.....
T Consensus 286 ~k~L~~GVVDgRNiw~~dl~~~~~~i~~~~~~~~~~~l~v--~psCsLlhvP~~~~~e~-~l~~~~~~~~afa~~ 357 (766)
T PLN02475 286 GKYLFAGVVDGRNIWANDLAASLATLQALEGIVGKDKLVV--STSCSLLHTAVDLVNET-KLDKELKSWLAFAAQ 357 (766)
T ss_pred CCeEEEEEEeCCCcccCCHHHHHHHHHHHHHhcCCCcEEE--eCCCCCccCCccccccc-cCCHHHHhhhhhHHH
Confidence 4899999999995 34567888898888887677555 58999865333222111 123579999987544
No 20
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=44.34 E-value=21 Score=30.59 Aligned_cols=46 Identities=24% Similarity=0.463 Sum_probs=32.8
Q ss_pred EEeecCCCCCC--------CchhHHHHHHHHh-----cCccEEEEeccCcchHHHHHhh
Q 022885 133 VIACADSRNGP--------SETNAALEFAVNT-----LEVQNILVIGHSDCGGIQALMR 178 (290)
Q Consensus 133 VI~CsDSRv~p--------~~~~aSLEYAV~~-----L~V~~IVV~GHs~CGaV~Aa~~ 178 (290)
++-+.|=|..| .++..+++|-..+ ...+.|+|+|||..|.+...+.
T Consensus 31 ~v~~~~Yrl~p~~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~ 89 (211)
T PF07859_consen 31 VVVSIDYRLAPEAPFPAALEDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLA 89 (211)
T ss_dssp EEEEEE---TTTSSTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHH
T ss_pred EEEEeeccccccccccccccccccceeeeccccccccccccceEEeecccccchhhhhh
Confidence 34455666544 2577899999988 6788999999999998876543
No 21
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=42.25 E-value=30 Score=25.26 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=21.9
Q ss_pred HHHHHhcCHHHHHHHhCCCeEEEEE
Q 022885 228 SILNLLTYPWIEERVRKELLFIHGG 252 (290)
Q Consensus 228 qv~nL~~~P~I~~~v~~g~L~V~G~ 252 (290)
-|..|.+||-+-+.+++|++.+.|.
T Consensus 5 iV~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHHChHHHHHHHcCCeeEecC
Confidence 3567889999999999999999885
No 22
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=33.55 E-value=22 Score=30.43 Aligned_cols=14 Identities=50% Similarity=0.956 Sum_probs=12.4
Q ss_pred ccEEEEeccCcchH
Q 022885 159 VQNILVIGHSDCGG 172 (290)
Q Consensus 159 V~~IVV~GHs~CGa 172 (290)
+.+|.|+||.+||=
T Consensus 3 ~~~I~i~G~~~sGK 16 (188)
T PF00009_consen 3 IRNIAIIGHVDSGK 16 (188)
T ss_dssp EEEEEEEESTTSSH
T ss_pred EEEEEEECCCCCCc
Confidence 56899999999995
No 23
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=29.70 E-value=19 Score=27.42 Aligned_cols=18 Identities=22% Similarity=0.017 Sum_probs=14.5
Q ss_pred eEEEEEEEEcCCCeEEEE
Q 022885 247 LFIHGGYYDLLNCTFEKW 264 (290)
Q Consensus 247 L~V~G~~YDi~tG~ve~~ 264 (290)
...|||.||+.||++...
T Consensus 64 Cp~Hg~~Fd~~tG~~~~~ 81 (97)
T PF00355_consen 64 CPCHGWRFDLDTGECVGG 81 (97)
T ss_dssp ETTTTEEEETTTSBEEES
T ss_pred eCCcCCEEeCCCceEecC
Confidence 456999999999987653
No 24
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=28.46 E-value=34 Score=29.33 Aligned_cols=14 Identities=43% Similarity=0.779 Sum_probs=12.5
Q ss_pred ccEEEEeccCcchH
Q 022885 159 VQNILVIGHSDCGG 172 (290)
Q Consensus 159 V~~IVV~GHs~CGa 172 (290)
+.+|+++||++||=
T Consensus 2 ~r~i~ivG~~~~GK 15 (194)
T cd01891 2 IRNIAIIAHVDHGK 15 (194)
T ss_pred ccEEEEEecCCCCH
Confidence 57999999999993
No 25
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=27.97 E-value=33 Score=32.10 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=11.9
Q ss_pred cEEEEeccCcchHH
Q 022885 160 QNILVIGHSDCGGI 173 (290)
Q Consensus 160 ~~IVV~GHs~CGaV 173 (290)
+-|-|+|||+||=-
T Consensus 30 EfvsilGpSGcGKS 43 (248)
T COG1116 30 EFVAILGPSGCGKS 43 (248)
T ss_pred CEEEEECCCCCCHH
Confidence 57899999999953
No 26
>PRK03592 haloalkane dehalogenase; Provisional
Probab=27.27 E-value=57 Score=29.51 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCccEEEEeccCcchHHHHHhh
Q 022885 148 AALEFAVNTLEVQNILVIGHSDCGGIQALMR 178 (290)
Q Consensus 148 aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~ 178 (290)
.-|.--+.+|+.+.++|+|||-.|.|...+.
T Consensus 81 ~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a 111 (295)
T PRK03592 81 RYLDAWFDALGLDDVVLVGHDWGSALGFDWA 111 (295)
T ss_pred HHHHHHHHHhCCCCeEEEEECHHHHHHHHHH
Confidence 3455556789999999999999999986554
No 27
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=26.58 E-value=32 Score=28.08 Aligned_cols=13 Identities=23% Similarity=0.685 Sum_probs=11.1
Q ss_pred EEEEeccCcchHH
Q 022885 161 NILVIGHSDCGGI 173 (290)
Q Consensus 161 ~IVV~GHs~CGaV 173 (290)
+|+|+||.+||=-
T Consensus 1 ~i~~vG~~~~GKs 13 (167)
T cd04160 1 SVLILGLDNAGKT 13 (167)
T ss_pred CEEEEecCCCCHH
Confidence 4899999999953
No 28
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=26.43 E-value=37 Score=27.55 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=11.5
Q ss_pred cEEEEeccCcchH
Q 022885 160 QNILVIGHSDCGG 172 (290)
Q Consensus 160 ~~IVV~GHs~CGa 172 (290)
+.|+|+|+++||=
T Consensus 1 ~~i~iiG~~~~GK 13 (168)
T cd01887 1 PVVTVMGHVDHGK 13 (168)
T ss_pred CEEEEEecCCCCH
Confidence 5799999999994
No 29
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=26.39 E-value=66 Score=27.69 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCccEEEEeccCcchHHHHHhh
Q 022885 148 AALEFAVNTLEVQNILVIGHSDCGGIQALMR 178 (290)
Q Consensus 148 aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~ 178 (290)
.-+..-+.+++.+.|+|+|||--|.+...+.
T Consensus 84 ~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a 114 (288)
T TIGR01250 84 DELEEVREKLGLDKFYLLGHSWGGMLAQEYA 114 (288)
T ss_pred HHHHHHHHHcCCCcEEEEEeehHHHHHHHHH
Confidence 3344456788998999999999998876543
No 30
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=25.50 E-value=43 Score=28.78 Aligned_cols=15 Identities=13% Similarity=0.523 Sum_probs=13.1
Q ss_pred CccEEEEeccCcchH
Q 022885 158 EVQNILVIGHSDCGG 172 (290)
Q Consensus 158 ~V~~IVV~GHs~CGa 172 (290)
++..|+|+|+.+||=
T Consensus 40 ~~~~I~iiG~~g~GK 54 (204)
T cd01878 40 GIPTVALVGYTNAGK 54 (204)
T ss_pred CCCeEEEECCCCCCH
Confidence 467999999999995
No 31
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=24.63 E-value=1.4e+02 Score=28.64 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=33.6
Q ss_pred CcEEEEeecCCCCC----CCchhHHHHHHHHhcCccEEEEeccCcchH
Q 022885 129 PKFMVIACADSRNG----PSETNAALEFAVNTLEVQNILVIGHSDCGG 172 (290)
Q Consensus 129 P~alVI~CsDSRv~----p~~~~aSLEYAV~~L~V~~IVV~GHs~CGa 172 (290)
.+.+.+||.|.|.. +.++..-|+.++. ++.+.|.|. ++||.
T Consensus 257 ~k~l~~GviD~rn~~vE~~eev~~~i~~~~~-~~~~~l~v~--pdcgl 301 (326)
T PRK08575 257 GRKVYLGILNARNTKMEKISTIRRIVNKVKR-KGVSDIIVG--NNTLF 301 (326)
T ss_pred CCEEEEEEEeCCCCCCCCHHHHHHHHHHHHh-cCCCeEEEe--CCCCc
Confidence 57899999999963 4567788999988 778888774 89996
No 32
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=24.18 E-value=88 Score=25.48 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=24.7
Q ss_pred hHHHHHHHHhcCccEEEEeccCcchHHHHHh
Q 022885 147 NAALEFAVNTLEVQNILVIGHSDCGGIQALM 177 (290)
Q Consensus 147 ~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa~ 177 (290)
...|...+..++.+.|+|+|||-=|.+...+
T Consensus 53 ~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~ 83 (228)
T PF12697_consen 53 AEDLAELLDALGIKKVILVGHSMGGMIALRL 83 (228)
T ss_dssp HHHHHHHHHHTTTSSEEEEEETHHHHHHHHH
T ss_pred hhhhhhccccccccccccccccccccccccc
Confidence 4567778889999999999999877766543
No 33
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=23.92 E-value=40 Score=27.89 Aligned_cols=13 Identities=38% Similarity=0.639 Sum_probs=11.3
Q ss_pred cEEEEeccCcchH
Q 022885 160 QNILVIGHSDCGG 172 (290)
Q Consensus 160 ~~IVV~GHs~CGa 172 (290)
.+|+++||++||=
T Consensus 1 rni~~vG~~~~GK 13 (179)
T cd01890 1 RNFSIIAHIDHGK 13 (179)
T ss_pred CcEEEEeecCCCH
Confidence 3799999999994
No 34
>PRK06233 hypothetical protein; Provisional
Probab=23.69 E-value=75 Score=31.04 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=34.9
Q ss_pred CcEEEEeecCCCCC----CCchhHHHHHHHHhcCccEEEEeccCcchHH
Q 022885 129 PKFMVIACADSRNG----PSETNAALEFAVNTLEVQNILVIGHSDCGGI 173 (290)
Q Consensus 129 P~alVI~CsDSRv~----p~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV 173 (290)
.+.+++||.|++.. +..+.+-|+-|...++.+.|.|. ++||--
T Consensus 297 ~k~v~lGvid~~~~~vE~~e~I~~rI~~a~~~v~~e~l~ls--pdCGf~ 343 (372)
T PRK06233 297 NVRIVLGLITSKFPELEDEDEIIARIDEATEYVPLSNLALS--TQCGFA 343 (372)
T ss_pred CCEEEeeeecCCCCCCCCHHHHHHHHHHHHHhCCHHHEEec--CCCCCc
Confidence 47899999999964 35577899999999988887764 899864
No 35
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=23.62 E-value=31 Score=26.31 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=13.8
Q ss_pred eEEEEEEEEcCCCeEE
Q 022885 247 LFIHGGYYDLLNCTFE 262 (290)
Q Consensus 247 L~V~G~~YDi~tG~ve 262 (290)
...|||.||+.||.+.
T Consensus 60 Cp~Hg~~fd~~~G~~~ 75 (98)
T cd03528 60 CPLHGGRFDLRTGKAL 75 (98)
T ss_pred eCCcCCEEECCCCccc
Confidence 5679999999999875
No 36
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=23.56 E-value=86 Score=28.60 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=19.4
Q ss_pred hhHHHHHHHHhc-CccEEEEeccCcchHHHHHh
Q 022885 146 TNAALEFAVNTL-EVQNILVIGHSDCGGIQALM 177 (290)
Q Consensus 146 ~~aSLEYAV~~L-~V~~IVV~GHs~CGaV~Aa~ 177 (290)
+.+++++-...+ +.+.|+++|||- ||+-++.
T Consensus 85 ~~~~~~~l~~~~~g~~~i~l~G~S~-Gg~~a~~ 116 (274)
T TIGR03100 85 IAAAIDAFREAAPHLRRIVAWGLCD-AASAALL 116 (274)
T ss_pred HHHHHHHHHhhCCCCCcEEEEEECH-HHHHHHH
Confidence 445555443333 678899999998 5555443
No 37
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=23.40 E-value=73 Score=28.75 Aligned_cols=30 Identities=17% Similarity=0.022 Sum_probs=22.9
Q ss_pred HHHHHHHhcCccEEEEeccCcchHHHHHhh
Q 022885 149 ALEFAVNTLEVQNILVIGHSDCGGIQALMR 178 (290)
Q Consensus 149 SLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~ 178 (290)
-|.-.+.+++.+.++++|||-.|.|...+.
T Consensus 91 ~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a 120 (294)
T PLN02824 91 QLNDFCSDVVGDPAFVICNSVGGVVGLQAA 120 (294)
T ss_pred HHHHHHHHhcCCCeEEEEeCHHHHHHHHHH
Confidence 444445678899999999999999885443
No 38
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=22.34 E-value=30 Score=26.51 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=13.5
Q ss_pred eEEEEEEEEcCCCeEE
Q 022885 247 LFIHGGYYDLLNCTFE 262 (290)
Q Consensus 247 L~V~G~~YDi~tG~ve 262 (290)
...|||.||+.||.+.
T Consensus 59 CP~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 59 CPWHGACFNLRTGDIE 74 (95)
T ss_pred cCCCCCEEECCCCcCc
Confidence 4579999999999765
No 39
>PRK01207 methionine synthase; Provisional
Probab=21.80 E-value=1.4e+02 Score=29.15 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=35.3
Q ss_pred CCCcEEEEeecCCCCC----CCchhHHHHHHHHhc-CccEEEEeccCcchHH
Q 022885 127 QSPKFMVIACADSRNG----PSETNAALEFAVNTL-EVQNILVIGHSDCGGI 173 (290)
Q Consensus 127 Q~P~alVI~CsDSRv~----p~~~~aSLEYAV~~L-~V~~IVV~GHs~CGaV 173 (290)
+.++.+.+||.|.+.. +..+..-|+.|+..+ +.+.|.| ..|||.-
T Consensus 269 ~~~~~Ig~GV~D~~s~~vEs~e~I~~ri~~~l~~v~~~e~l~v--npDCGl~ 318 (343)
T PRK01207 269 QRKKFIGLGVTDVHIDYVEPVKLIEDRIRYALKIIKDPELVRL--NPDCGLR 318 (343)
T ss_pred CCCCeEEeeEEeCCCCCCCCHHHHHHHHHHHHHhcCCcceEEE--cCCCCCC
Confidence 4577899999999964 345778999999999 4767666 5899963
No 40
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=21.08 E-value=56 Score=26.64 Aligned_cols=13 Identities=15% Similarity=0.506 Sum_probs=11.6
Q ss_pred cEEEEeccCcchH
Q 022885 160 QNILVIGHSDCGG 172 (290)
Q Consensus 160 ~~IVV~GHs~CGa 172 (290)
+.|+|+|++++|=
T Consensus 1 ~~i~~~G~~~~GK 13 (168)
T cd01897 1 PTLVIAGYPNVGK 13 (168)
T ss_pred CeEEEEcCCCCCH
Confidence 5799999999995
No 41
>PRK14432 acylphosphatase; Provisional
Probab=20.59 E-value=72 Score=25.06 Aligned_cols=21 Identities=14% Similarity=0.048 Sum_probs=18.2
Q ss_pred CeEEEEEEEEcCCCeEEEEec
Q 022885 246 LLFIHGGYYDLLNCTFEKWTL 266 (290)
Q Consensus 246 ~L~V~G~~YDi~tG~ve~~~~ 266 (290)
++.|.||+.+..+|.|+.+-.
T Consensus 27 ~lgl~G~V~N~~dG~Vei~~~ 47 (93)
T PRK14432 27 NMKLKGFVKNLNDGRVEIVAF 47 (93)
T ss_pred HhCCEEEEEECCCCCEEEEEE
Confidence 477999999999999988654
No 42
>PRK12359 flavodoxin FldB; Provisional
Probab=20.58 E-value=1.2e+02 Score=26.47 Aligned_cols=46 Identities=11% Similarity=0.038 Sum_probs=30.7
Q ss_pred CCCcEEEEeecCCCCCCC---chhHHHHHHHHhcCccEEEEeccCcchHHHH
Q 022885 127 QSPKFMVIACADSRNGPS---ETNAALEFAVNTLEVQNILVIGHSDCGGIQA 175 (290)
Q Consensus 127 Q~P~alVI~CsDSRv~p~---~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~A 175 (290)
+..++++|||.|+-.-+. +..+-|.-.+..+|. .|+|+..|-|-..
T Consensus 78 ~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga---~ivG~~~~~gY~f 126 (172)
T PRK12359 78 EGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGV---KFVGYWPTEGYEF 126 (172)
T ss_pred CCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCC---eEEeeEeCCCccc
Confidence 567899999999743222 334555555555555 4679999988763
No 43
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=20.25 E-value=53 Score=28.79 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=11.2
Q ss_pred cEEEEeccCcchH
Q 022885 160 QNILVIGHSDCGG 172 (290)
Q Consensus 160 ~~IVV~GHs~CGa 172 (290)
.+|+|+||.++|=
T Consensus 1 rnv~iiG~~~~GK 13 (213)
T cd04167 1 RNVAIAGHLHHGK 13 (213)
T ss_pred CcEEEEcCCCCCH
Confidence 3689999999994
No 44
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=20.22 E-value=4.9e+02 Score=28.15 Aligned_cols=120 Identities=15% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHhhhh-cCCCcEEEEeecCCC----CCCCchhHHHHHHHHhcCccEEEEeccCcchHHHHHhhhccCCcchhhhHHHHH
Q 022885 120 FQNLAK-AQSPKFMVIACADSR----NGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWV 194 (290)
Q Consensus 120 ~~~La~-gQ~P~alVI~CsDSR----v~p~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~~~~~~~~~~~i~~wl 194 (290)
++.+.. .+..+.+++|+.|+| ..+..+..-|+-+...+ +.|+|- ++||--.--.+......-. +.+.+|+
T Consensus 271 l~~l~~~~p~~k~l~lGVId~rn~~~ed~e~v~~ri~~a~~~v--e~L~ls--psCgL~~vP~~~~~E~~l~-~~~~~~~ 345 (758)
T PRK05222 271 LAALLKYFPADKVLSAGVIDGRNIWRADLEAALALLEPLAAKV--DRLWVA--PSCSLLHVPVDLDAETKLD-PELKSWL 345 (758)
T ss_pred hHHHHhhcCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHhh--ccEEEe--CCCCCcCCCccccccccCC-HHHHhhh
Q ss_pred HhhHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHhcC-----HHHHHHHhC
Q 022885 195 VNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTY-----PWIEERVRK 244 (290)
Q Consensus 195 ~~i~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~nL~~~-----P~I~~~v~~ 244 (290)
.....-+.+.......+...+....-.-.+-...+....++ +.|+.++++
T Consensus 346 afa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 400 (758)
T PRK05222 346 AFAKQKLEELALLARALNGGRGAVAEALAANRAAIAARRTSPRVHNPAVRARLAA 400 (758)
T ss_pred hhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhCCccCCHHHHHHHHh
Done!