Query 022886
Match_columns 290
No_of_seqs 134 out of 1510
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:51:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08588 succinyl-diaminopimel 100.0 7E-34 1.5E-38 261.2 27.3 249 2-282 113-375 (377)
2 PRK13013 succinyl-diaminopimel 100.0 1.1E-32 2.3E-37 257.4 28.3 259 2-282 136-421 (427)
3 PRK06915 acetylornithine deace 100.0 1E-32 2.2E-37 257.1 26.2 258 2-283 147-418 (422)
4 PRK13009 succinyl-diaminopimel 100.0 4.2E-32 9.1E-37 249.2 27.1 246 2-283 112-374 (375)
5 TIGR01910 DapE-ArgE acetylorni 100.0 6.7E-33 1.5E-37 254.5 20.5 241 2-271 118-363 (375)
6 PRK08651 succinyl-diaminopimel 100.0 7.8E-32 1.7E-36 249.0 26.3 249 2-282 127-390 (394)
7 TIGR01246 dapE_proteo succinyl 100.0 1E-31 2.2E-36 246.3 26.5 244 2-281 109-369 (370)
8 PRK08652 acetylornithine deace 100.0 2.2E-31 4.7E-36 241.9 25.2 226 11-282 107-344 (347)
9 TIGR01892 AcOrn-deacetyl acety 100.0 2.6E-31 5.6E-36 242.9 24.6 230 2-267 111-343 (364)
10 PRK06837 acetylornithine deace 100.0 3.2E-31 6.9E-36 247.3 25.6 256 2-282 151-421 (427)
11 PRK07522 acetylornithine deace 100.0 2.3E-31 5.1E-36 245.0 24.3 253 2-283 117-384 (385)
12 PRK13983 diaminopimelate amino 100.0 4.8E-31 1E-35 244.0 25.5 249 2-279 130-397 (400)
13 TIGR03526 selenium_YgeY putati 100.0 4.1E-31 8.8E-36 244.3 24.8 247 2-283 121-394 (395)
14 TIGR03320 ygeY M20/DapE family 100.0 6.3E-31 1.4E-35 243.1 24.9 246 2-281 121-392 (395)
15 TIGR01900 dapE-gram_pos succin 100.0 6.4E-31 1.4E-35 241.1 24.7 242 8-271 124-371 (373)
16 PRK00466 acetyl-lysine deacety 100.0 1E-30 2.2E-35 237.6 25.2 225 2-282 105-342 (346)
17 PRK13004 peptidase; Reviewed 100.0 1.3E-30 2.8E-35 241.2 24.6 258 2-281 123-394 (399)
18 PRK08737 acetylornithine deace 100.0 2.5E-30 5.3E-35 236.3 25.3 233 11-280 117-362 (364)
19 PRK07338 hypothetical protein; 100.0 1.8E-30 4E-35 240.5 23.6 239 2-281 142-396 (402)
20 TIGR01880 Ac-peptdase-euk N-ac 100.0 1.3E-30 2.7E-35 241.4 22.4 254 2-283 125-398 (400)
21 PRK05111 acetylornithine deace 100.0 6.8E-30 1.5E-34 235.2 25.7 244 2-282 124-380 (383)
22 PRK08201 hypothetical protein; 100.0 7.4E-30 1.6E-34 240.1 25.5 256 2-282 133-453 (456)
23 PRK04443 acetyl-lysine deacety 100.0 7E-30 1.5E-34 232.3 23.9 227 8-280 107-346 (348)
24 PRK08596 acetylornithine deace 100.0 4.2E-29 9.1E-34 232.6 26.0 254 2-281 131-414 (421)
25 PRK13007 succinyl-diaminopimel 100.0 6.3E-29 1.4E-33 226.3 25.5 217 10-267 112-330 (352)
26 PRK06133 glutamate carboxypept 100.0 6.3E-29 1.4E-33 230.7 24.5 239 2-282 149-406 (410)
27 PRK09104 hypothetical protein; 100.0 1.9E-28 4.2E-33 230.9 26.3 256 2-282 141-461 (464)
28 TIGR01883 PepT-like peptidase 100.0 4.8E-29 1E-33 227.8 21.0 233 2-278 113-359 (361)
29 PRK07906 hypothetical protein; 100.0 7.1E-29 1.5E-33 231.5 22.5 247 2-281 118-425 (426)
30 PRK07473 carboxypeptidase; Pro 100.0 1.5E-28 3.3E-33 225.6 24.2 234 2-281 125-374 (376)
31 PRK06446 hypothetical protein; 100.0 9.9E-29 2.1E-33 231.1 22.7 252 2-283 116-434 (436)
32 TIGR01902 dapE-lys-deAc N-acet 100.0 2.9E-28 6.3E-33 220.6 23.4 220 12-282 101-333 (336)
33 PRK09290 allantoate amidohydro 100.0 2.6E-28 5.6E-33 226.9 22.9 242 2-282 105-409 (413)
34 PRK12892 allantoate amidohydro 100.0 2.7E-28 5.8E-33 226.7 22.3 241 2-281 106-408 (412)
35 PLN02280 IAA-amino acid hydrol 100.0 6.3E-28 1.4E-32 226.6 23.4 243 2-283 199-474 (478)
36 PRK09133 hypothetical protein; 100.0 3.7E-28 8.1E-33 229.4 22.0 248 2-282 154-468 (472)
37 PRK07907 hypothetical protein; 100.0 2E-27 4.3E-32 223.2 25.9 251 8-282 140-446 (449)
38 PRK12893 allantoate amidohydro 100.0 5.6E-28 1.2E-32 224.6 21.6 243 2-282 108-408 (412)
39 TIGR01879 hydantase amidase, h 100.0 7.8E-28 1.7E-32 222.8 21.9 242 1-280 98-399 (401)
40 PRK12891 allantoate amidohydro 100.0 8.5E-28 1.8E-32 223.4 21.8 241 1-282 107-408 (414)
41 PRK12890 allantoate amidohydro 100.0 1.1E-27 2.4E-32 222.6 22.3 246 2-282 106-410 (414)
42 COG1473 AbgB Metal-dependent a 100.0 2.1E-27 4.7E-32 215.8 22.2 225 2-263 116-354 (392)
43 PRK13381 peptidase T; Provisio 100.0 2.3E-27 5.1E-32 219.9 22.2 238 2-283 151-403 (404)
44 PRK07079 hypothetical protein; 100.0 6.4E-27 1.4E-31 220.8 25.5 253 2-282 140-454 (469)
45 TIGR01891 amidohydrolases amid 100.0 3E-27 6.6E-32 216.2 22.0 219 2-259 103-333 (363)
46 TIGR01886 dipeptidase dipeptid 100.0 8.9E-27 1.9E-31 219.3 24.3 242 1-282 129-464 (466)
47 PRK08262 hypothetical protein; 100.0 3.6E-27 7.7E-32 223.5 21.1 253 2-283 167-484 (486)
48 COG0624 ArgE Acetylornithine d 100.0 2.1E-26 4.6E-31 213.8 25.1 253 2-283 129-407 (409)
49 PLN02693 IAA-amino acid hydrol 100.0 1.8E-26 3.8E-31 215.3 24.6 222 2-262 149-385 (437)
50 PRK05469 peptidase T; Provisio 99.9 1E-25 2.2E-30 209.2 21.2 236 2-281 153-403 (408)
51 PRK15026 aminoacyl-histidine d 99.9 1.3E-25 2.8E-30 211.5 20.0 250 2-281 125-477 (485)
52 TIGR01882 peptidase-T peptidas 99.9 5.6E-26 1.2E-30 210.9 16.9 237 2-282 155-406 (410)
53 PRK07318 dipeptidase PepV; Rev 99.9 2.1E-25 4.6E-30 210.2 19.4 246 1-282 130-464 (466)
54 TIGR03176 AllC allantoate amid 99.9 1.7E-24 3.7E-29 200.5 22.1 244 1-282 100-402 (406)
55 KOG2275 Aminoacylase ACY1 and 99.9 1.3E-24 2.8E-29 192.9 18.7 252 2-282 142-417 (420)
56 TIGR01893 aa-his-dipept aminoa 99.9 9.6E-24 2.1E-28 199.5 22.6 234 4-267 121-452 (477)
57 PRK06156 hypothetical protein; 99.9 2.5E-23 5.4E-28 198.4 23.0 246 2-282 167-514 (520)
58 PRK13590 putative bifunctional 99.9 3.4E-23 7.3E-28 199.8 22.4 243 1-282 282-586 (591)
59 PRK13799 unknown domain/N-carb 99.9 4.8E-23 1E-27 198.6 21.0 244 1-281 282-587 (591)
60 PRK08554 peptidase; Reviewed 99.9 7.3E-23 1.6E-27 191.2 21.1 248 2-282 116-436 (438)
61 PRK07205 hypothetical protein; 99.9 3.3E-22 7.1E-27 187.6 23.8 241 2-282 129-441 (444)
62 TIGR01887 dipeptidaselike dipe 99.9 1.5E-22 3.3E-27 189.4 20.7 220 2-261 119-415 (447)
63 KOG2276 Metalloexopeptidases [ 99.9 4.3E-20 9.3E-25 162.9 22.3 241 1-263 144-439 (473)
64 PF07687 M20_dimer: Peptidase 99.8 5.7E-18 1.2E-22 128.6 9.7 109 62-175 1-109 (111)
65 COG2195 PepD Di- and tripeptid 99.6 6.7E-15 1.5E-19 134.5 12.8 235 9-283 165-408 (414)
66 PF01546 Peptidase_M20: Peptid 98.8 1.1E-08 2.3E-13 84.6 6.0 56 2-60 49-105 (189)
67 COG4187 RocB Arginine degradat 98.4 1.7E-06 3.6E-11 78.5 8.3 153 9-175 159-327 (553)
68 PF04389 Peptidase_M28: Peptid 92.1 0.053 1.1E-06 44.2 0.6 52 2-56 39-90 (179)
69 PRK09961 exoaminopeptidase; Pr 91.3 0.51 1.1E-05 43.0 6.1 64 215-280 254-331 (344)
70 TIGR03107 glu_aminopep glutamy 87.9 0.57 1.2E-05 42.8 3.7 40 10-57 197-236 (350)
71 PRK10199 alkaline phosphatase 87.9 0.44 9.6E-06 43.2 2.9 33 2-39 156-188 (346)
72 PRK09864 putative peptidase; P 87.5 0.57 1.2E-05 42.8 3.4 46 3-57 186-231 (356)
73 PF05343 Peptidase_M42: M42 gl 87.0 0.5 1.1E-05 42.0 2.7 39 10-56 153-191 (292)
74 PRK09961 exoaminopeptidase; Pr 86.8 0.8 1.7E-05 41.7 4.0 39 10-56 185-223 (344)
75 COG1363 FrvX Cellulase M and r 83.8 0.92 2E-05 41.3 2.8 41 8-56 197-237 (355)
76 TIGR03106 trio_M42_hydro hydro 79.5 1.1 2.4E-05 40.8 1.7 26 2-27 196-221 (343)
77 TIGR03107 glu_aminopep glutamy 66.1 15 0.00033 33.5 5.8 52 215-267 263-317 (350)
78 PHA02448 hypothetical protein 63.3 26 0.00057 26.9 5.6 74 8-96 22-102 (192)
79 COG4187 RocB Arginine degradat 56.0 14 0.0003 34.6 3.6 64 200-267 455-520 (553)
80 COG2234 Iap Predicted aminopep 55.7 9.7 0.00021 35.6 2.7 35 2-41 241-275 (435)
81 PRK15026 aminoacyl-histidine d 50.6 29 0.00063 33.2 5.0 33 140-172 353-385 (485)
82 COG1363 FrvX Cellulase M and r 45.0 58 0.0013 29.8 5.8 48 216-264 268-318 (355)
83 KOG2194 Aminopeptidases of the 43.8 14 0.00031 37.3 1.9 50 2-56 176-226 (834)
84 PRK09864 putative peptidase; P 40.1 91 0.002 28.6 6.4 64 215-280 262-339 (356)
85 PRK05943 50S ribosomal protein 38.3 56 0.0012 23.5 3.9 22 245-266 16-38 (94)
86 cd00495 Ribosomal_L25_TL5_CTC 35.4 74 0.0016 22.7 4.1 22 245-266 15-37 (91)
87 cd06406 PB1_P67 A PB1 domain i 33.4 85 0.0019 22.1 3.9 29 144-172 8-36 (80)
88 TIGR03106 trio_M42_hydro hydro 31.5 81 0.0017 28.7 4.6 51 215-267 264-319 (343)
89 KOG2195 Transferrin receptor a 30.5 35 0.00075 34.3 2.2 35 3-40 387-421 (702)
90 PF04722 Ssu72: Ssu72-like pro 28.7 1.1E+02 0.0025 25.3 4.5 38 248-285 21-71 (195)
91 COG1825 RplY Ribosomal protein 28.0 1.2E+02 0.0027 21.9 4.2 23 245-267 16-39 (93)
92 PRK06156 hypothetical protein; 25.7 6.1E+02 0.013 24.4 9.9 41 126-172 241-281 (520)
93 cd06411 PB1_p51 The PB1 domain 25.2 1.5E+02 0.0032 20.8 3.9 29 144-172 4-32 (78)
94 PF01386 Ribosomal_L25p: Ribos 24.2 61 0.0013 23.0 2.0 23 245-267 13-36 (88)
No 1
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=7e-34 Score=261.19 Aligned_cols=249 Identities=23% Similarity=0.303 Sum_probs=203.0
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCCCceeeeceeEEEEEEEEecCCCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~v~v~G~~~Hs 81 (290)
++|++.+..++++|.|+|++|||.|+ .|++++++++.+++ +|+++++||+...++.+++|..+++|+++|+++|+
T Consensus 113 ~~l~~~~~~~~~~i~l~~~~dEE~g~---~G~~~~~~~~~~~~--~d~~i~~ep~~~~i~~~~~G~~~~~i~~~G~~~Hs 187 (377)
T PRK08588 113 IELKEQGQLLNGTIRLLATAGEEVGE---LGAKQLTEKGYADD--LDALIIGEPSGHGIVYAHKGSMDYKVTSTGKAAHS 187 (377)
T ss_pred HHHHHcCCCCCCcEEEEEEcccccCc---hhHHHHHhcCccCC--CCEEEEecCCCceeEEEEEEEEEEEEEEEeechhc
Confidence 46777887889999999999999987 89999999876543 57899999998888999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHH
Q 022886 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD 161 (290)
Q Consensus 82 ~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~ 161 (290)
+.|+.|.||+..+++++.++++... .+.... .+.+..+++++.|+ ||...|+||++|++++|+|+.|+++.++
T Consensus 188 s~p~~g~nAi~~~~~~l~~l~~~~~-~~~~~~-----~~~~~~t~~v~~i~-gG~~~nvip~~~~~~~d~R~~p~~~~~~ 260 (377)
T PRK08588 188 SMPELGVNAIDPLLEFYNEQKEYFD-SIKKHN-----PYLGGLTHVVTIIN-GGEQVNSVPDEAELEFNIRTIPEYDNDQ 260 (377)
T ss_pred cCCccccCHHHHHHHHHHHHHHHhh-hhcccC-----ccCCCCceeeeEEe-CCCcCCcCCCeEEEEEEeccCCCCCHHH
Confidence 9999999999999999999987532 222110 12235788999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCC-Cccccc
Q 022886 162 VMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSIT 240 (290)
Q Consensus 162 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~-~~~~~~ 240 (290)
+.+.+++.+++.... .+.++++++...+||+..++++++++.+++++++.+|.+ ....+.
T Consensus 261 v~~~i~~~~~~~~~~-------------------~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 321 (377)
T PRK08588 261 VISLLQEIINEVNQN-------------------GAAQLSLDIYSNHRPVASDKDSKLVQLAKDVAKSYVGQDIPLSAIP 321 (377)
T ss_pred HHHHHHHHHHHHhhc-------------------cCCceEEEEecCCCCcCCCCCCHHHHHHHHHHHHhhCCCCceecCC
Confidence 999999988875431 124567776677888888889999999999999988864 344567
Q ss_pred cCcchHHHHhh--cCCcEEEEcCCCC--ccc---------cchHHHHHHHHHHHH
Q 022886 241 GTLPLIRELQD--EGFDVQTAGYGMP--PLQ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 241 gg~d~~~~~~~--~g~~~v~~Gpg~~--~~~---------~~~~~~iy~~~~~~~ 282 (290)
|++|.+. |.. .|+|++.||||.. .|+ +.+.+++|.+++.+.
T Consensus 322 g~tD~~~-~~~~~~~ip~i~~Gpg~~~~~H~~~E~i~~~~l~~~~~~~~~~~~~~ 375 (377)
T PRK08588 322 GATDASS-FLKKKPDFPVIIFGPGNNLTAHQVDEYVEKDMYLKFIDIYKEIIIQY 375 (377)
T ss_pred CcccHHH-HhhhcCCCCEEEECCCCCccCCCCCceeEHHHHHHHHHHHHHHHHHH
Confidence 8888544 543 5899999999942 343 667788888887653
No 2
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=1.1e-32 Score=257.35 Aligned_cols=259 Identities=14% Similarity=0.158 Sum_probs=198.3
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCC-CceeeeceeEEEEEEEEecCCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFH 80 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~-~i~~~~~g~~~~~v~v~G~~~H 80 (290)
++|++.+..++++|.|+|++|||+|+. .|.++|++++.++..+.|++|++||+.. .++++++|..+++|+++|+++|
T Consensus 136 ~~l~~~~~~~~~~v~~~~~~dEE~g~~--~g~~~l~~~~~~~~~~~d~~i~~ep~~~~~i~~~~~G~~~~~i~v~G~~~H 213 (427)
T PRK13013 136 EAFLAVYPDFAGSIEISGTADEESGGF--GGVAYLAEQGRFSPDRVQHVIIPEPLNKDRICLGHRGVWWAEVETRGRIAH 213 (427)
T ss_pred HHHHHhCCCCCccEEEEEEeccccCCh--hHHHHHHhcCCccccCCCEEEEecCCCCCceEEeeeeEEEEEEEEEccccc
Confidence 567777778899999999999998862 4888898887655334689999999874 6889999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCC-Cccccc-CcCCCCceeeeEEecCCCcc----------ceeCCceEEE
Q 022886 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPH-PKEQVY-GFETPSTMKPTQWSYPGGGI----------NQIPGECTVS 148 (290)
Q Consensus 81 s~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~-~~~~~~-~~~~~~~i~~~~i~~gg~~~----------n~vP~~a~~~ 148 (290)
++.|+.|.||+..++++|++|++...+..... ...... ......+++++.|+ +|... |+||++|+++
T Consensus 214 ~~~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~-gG~~~~~~~~~~~~~n~IPd~a~~~ 292 (427)
T PRK13013 214 GSMPFLGDSAIRHMGAVLAEIEERLFPLLATRRTAMPVVPEGARQSTLNINSIH-GGEPEQDPDYTGLPAPCVADRCRIV 292 (427)
T ss_pred cCCCCcCcCHHHHHHHHHHHHHHHhhhhhhcccccCCCCCcccCCCceeeeEEe-CCCccccccccccccccCCceEEEE
Confidence 99999999999999999999976432111100 000000 01124688999999 88766 9999999999
Q ss_pred EEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHH
Q 022886 149 GDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATE 228 (290)
Q Consensus 149 ~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~ 228 (290)
+|+|++|+++.+++.+++++.+.++.+..+ +..++++....+||+.++.++++++.+.++++
T Consensus 293 idiR~~p~~~~~~v~~~i~~~i~~~~~~~~------------------~~~~~~~~~~~~~p~~~~~~~~lv~~l~~a~~ 354 (427)
T PRK13013 293 IDRRFLIEEDLDEVKAEITALLERLKRARP------------------GFAYEIRDLFEVLPTMTDRDAPVVRSVAAAIE 354 (427)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHhhCC------------------CceeEEEEcccCCcccCCCCCHHHHHHHHHHH
Confidence 999999999999999999999987653211 23455554456788888889999999999999
Q ss_pred HHhCCCC-ccccccCcchHHHHhhcC-C-cEEEEcCCCC--ccc---------cchHHHHHHHHHHHH
Q 022886 229 EVVGHVN-PYSITGTLPLIRELQDEG-F-DVQTAGYGMP--PLQ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 229 ~~~g~~~-~~~~~gg~d~~~~~~~~g-~-~~v~~Gpg~~--~~~---------~~~~~~iy~~~~~~~ 282 (290)
+.+|.++ ...++|++| ++++...| + |++.||||.. +|+ +.+.+++|..++.+.
T Consensus 355 ~~~g~~~~~~~~~g~~D-~~~~~~~g~~~~~v~fGPg~~~~aH~~nE~v~i~~l~~~~~~l~~~l~~~ 421 (427)
T PRK13013 355 RVLGRQADYVVSPGTYD-QKHIDRIGKLKNCIAYGPGILDLAHQPDEWVGIADMVDSAKVMALVLADL 421 (427)
T ss_pred HhhCCCCceeecCccCC-HHHHHhcCCCCCEEEECCCCccccCCCCceeEHHHHHHHHHHHHHHHHHH
Confidence 9888653 445567778 67777777 4 6999999853 454 556667777666544
No 3
>PRK06915 acetylornithine deacetylase; Validated
Probab=100.00 E-value=1e-32 Score=257.13 Aligned_cols=258 Identities=15% Similarity=0.128 Sum_probs=198.8
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCCCceeeeceeEEEEEEEEecCCCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~v~v~G~~~Hs 81 (290)
++|++.+..++++|.|+|++|||+|+ .|+..++..+ +++|++|++||+...++.+++|..+++|+++|+++|+
T Consensus 147 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~G~~~~~~~~----~~~d~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~H~ 219 (422)
T PRK06915 147 EALIESGIELKGDVIFQSVIEEESGG---AGTLAAILRG----YKADGAIIPEPTNMKFFPKQQGSMWFRLHVKGKAAHG 219 (422)
T ss_pred HHHHHcCCCCCCcEEEEEecccccCC---cchHHHHhcC----cCCCEEEECCCCCccceeecccEEEEEEEEEeecccc
Confidence 56777787889999999999999987 7998888765 3579999999998889999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHH
Q 022886 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD 161 (290)
Q Consensus 82 ~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~ 161 (290)
|.|+.|.||+..+++++.+|+++....-..........+..+.+++++.|+ ||...|+||++|++.+|+|+.|+++.++
T Consensus 220 s~p~~g~nAi~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~t~~v~~i~-gG~~~nvvP~~a~~~~d~R~~p~~~~~~ 298 (422)
T PRK06915 220 GTRYEGVSAIEKSMFVIDHLRKLEEKRNDRITDPLYKGIPIPIPINIGKIE-GGSWPSSVPDSVILEGRCGIAPNETIEA 298 (422)
T ss_pred CCCCcCcCHHHHHHHHHHHHHHHHHHhccccCCCcccCCCCCceEeEEEee-CCCCCCccCcEEEEEEEEEECCCCCHHH
Confidence 999999999999999999998763211000000000011224689999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEec-CCCccccCCCCHHHHHHHHHHHHHhCCC-Ccccc
Q 022886 162 VMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE-ATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSI 239 (290)
Q Consensus 162 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~d~~~~~~l~~a~~~~~g~~-~~~~~ 239 (290)
+.++|++.+++....... ..+..+++++.. ..+++.++.|+++++.+++++++++|.+ ....+
T Consensus 299 v~~~i~~~l~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~~~~d~~lv~~l~~a~~~~~G~~~~~~~~ 363 (422)
T PRK06915 299 AKEEFENWIAELNDVDEW---------------FVEHPVEVEWFGARWVPGELEENHPLMTTLEHNFVEIEGNKPIIEAS 363 (422)
T ss_pred HHHHHHHHHHHHhccChh---------------hhcCCceEEeecccCCcccCCCCCHHHHHHHHHHHHHhCCCCeecee
Confidence 999999999876432100 001223454433 2456677789999999999999988864 34456
Q ss_pred ccCcchHHHHhhc-CCcEEEEcCCCC--ccc---------cchHHHHHHHHHHHHH
Q 022886 240 TGTLPLIRELQDE-GFDVQTAGYGMP--PLQ---------FTSFHSVYKTLIQKTW 283 (290)
Q Consensus 240 ~gg~d~~~~~~~~-g~~~v~~Gpg~~--~~~---------~~~~~~iy~~~~~~~~ 283 (290)
.|++| +++|.+. |+|++.||||.. .|+ +...+++|..++.+..
T Consensus 364 ~g~tD-~~~~~~~~giP~v~fGpg~~~~aH~~dE~v~~~~l~~~~~~~~~ll~~~~ 418 (422)
T PRK06915 364 PWGTD-GGLLTQIAGVPTIVFGPGETKVAHYPNEYIEVDKMIAAAKIIALTLLDWC 418 (422)
T ss_pred eeecc-HHHHhccCCCCEEEECCCCccccCCCCceeEHHHHHHHHHHHHHHHHHHh
Confidence 77888 5667776 999999999864 343 5566777777766543
No 4
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=4.2e-32 Score=249.15 Aligned_cols=246 Identities=20% Similarity=0.203 Sum_probs=193.0
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCC-----CceeeeceeEEEEEEEEe
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~v~v~G 76 (290)
++|++.+..++++|.|+|++|||+++. .|++.+++.....+.++|+++++||+.. .++.+++|..+++++++|
T Consensus 112 ~~l~~~~~~~~~~i~~~~~~~EE~~~~--~G~~~~~~~~~~~~~~~d~~i~~ep~~~~~~~~~i~~g~~g~~~~~i~v~G 189 (375)
T PRK13009 112 ERFVAAHPDHKGSIAFLITSDEEGPAI--NGTVKVLEWLKARGEKIDYCIVGEPTSTERLGDVIKNGRRGSLTGKLTVKG 189 (375)
T ss_pred HHHHHhcCCCCceEEEEEEeecccccc--cCHHHHHHHHHHcCcCCCEEEEcCCCcccCCCCeEEEecceEEEEEEEEEe
Confidence 456777777889999999999998652 5999998753323345799999998753 366799999999999999
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCC-ccceeCCceEEEEEEEECC
Q 022886 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTP 155 (290)
Q Consensus 77 ~~~Hs~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~-~~n~vP~~a~~~~~iR~~p 155 (290)
+++|++.|+.|.||+..++++|.+|+....+... .+..+.+++++.|+ +|. ..|+||++|++.+|+|++|
T Consensus 190 ~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~~~--------~~~~~~~~~i~~i~-~G~~~~nvip~~~~~~~diR~~~ 260 (375)
T PRK13009 190 VQGHVAYPHLADNPIHLAAPALAELAATEWDEGN--------EFFPPTSLQITNID-AGTGATNVIPGELEAQFNFRFST 260 (375)
T ss_pred cCcccCCCCcccCHHHHHHHHHHHHHhhhccCCC--------ccCCCceEEEEEEe-cCCCCCcccCCcEEEEEEEecCC
Confidence 9999999999999999999999999764321111 12235678999999 665 7899999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCC-
Q 022886 156 FYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV- 234 (290)
Q Consensus 156 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~- 234 (290)
+.+.+++.++|++.+++. +.++++++...++++..+. +++++.+++++++.+|.+
T Consensus 261 ~~~~e~i~~~i~~~~~~~-----------------------~~~~~~~~~~~~~p~~~~~-~~~~~~l~~a~~~~~g~~~ 316 (375)
T PRK13009 261 EHTAESLKARVEAILDKH-----------------------GLDYTLEWTLSGEPFLTPP-GKLVDAVVAAIEAVTGITP 316 (375)
T ss_pred CCCHHHHHHHHHHHHHhc-----------------------CCCeEEEEecCCCcccCCC-cHHHHHHHHHHHHHhCCCc
Confidence 999999999988888742 2345565555666776654 899999999999988864
Q ss_pred CccccccCcchHHHHhhcCCcEEEEcCCCC-ccc---------cchHHHHHHHHHHHHH
Q 022886 235 NPYSITGTLPLIRELQDEGFDVQTAGYGMP-PLQ---------FTSFHSVYKTLIQKTW 283 (290)
Q Consensus 235 ~~~~~~gg~d~~~~~~~~g~~~v~~Gpg~~-~~~---------~~~~~~iy~~~~~~~~ 283 (290)
.+..++|++| ++++...|+|++.||||.. .|+ +.+.+++|..++.+.+
T Consensus 317 ~~~~~~g~td-a~~~~~~g~p~v~~Gp~~~~~H~~~E~i~~~~l~~~~~~~~~~~~~~~ 374 (375)
T PRK13009 317 ELSTSGGTSD-ARFIADYGAQVVEFGPVNATIHKVNECVSVADLEKLTRIYERILERLL 374 (375)
T ss_pred eeeccCCCcc-HHHHHHcCCCeEEeccCcccCCCCCCcEEHHHHHHHHHHHHHHHHHHh
Confidence 4555677777 7778878999999999864 444 5667788888776654
No 5
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=100.00 E-value=6.7e-33 Score=254.53 Aligned_cols=241 Identities=20% Similarity=0.236 Sum_probs=192.3
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCC-CCCceeeeceeEEEEEEEEecCCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFH 80 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~-~~~i~~~~~g~~~~~v~v~G~~~H 80 (290)
++|++.+..++++|.|+|+++||.|+ .|++++++++.++ ++|++|+.||+ .+.++++++|..+++|+++|+++|
T Consensus 118 ~~l~~~~~~~~~~i~~~~~~~EE~g~---~G~~~~~~~~~~~--~~d~~i~~~~~~~~~v~~~~~G~~~~~i~~~G~~~H 192 (375)
T TIGR01910 118 KAIREAGIKPNGNIILQSVVDEESGE---AGTLYLLQRGYFK--DADGVLIPEPSGGDNIVIGHKGSIWFKLRVKGKQAH 192 (375)
T ss_pred HHHHHcCCCCCccEEEEEEcCcccCc---hhHHHHHHcCCCC--CCCEEEECCCCCCCceEEEecceEEEEEEEeeeecc
Confidence 56777777889999999999999987 8999999887543 36899999998 578889999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChH
Q 022886 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (290)
Q Consensus 81 s~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~ 160 (290)
+|.|+.|.||+..++++|.+|.+.......... ........+++++.|+ ||...|+||++|++.+|+|+.|+++.+
T Consensus 193 s~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~---~~~~~~~~t~~i~~i~-gG~~~nviP~~~~~~~diR~~~~~~~~ 268 (375)
T TIGR01910 193 ASFPQFGVNAIMKLAKLITELNELEEHIYARNS---YGFIPGPITFNPGVIK-GGDWVNSVPDYCEFSIDVRIIPEENLD 268 (375)
T ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHhhhccc---ccccCCCccccceeEE-CCCCcCcCCCEEEEEEEeeeCCCCCHH
Confidence 999999999999999999999876322111000 0011234688999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCC-ccccCCCCHHHHHHHHHHHHHhCCC-Cccc
Q 022886 161 DVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATN-GVACNLDSRGFHVLCKATEEVVGHV-NPYS 238 (290)
Q Consensus 161 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~d~~~~~~l~~a~~~~~g~~-~~~~ 238 (290)
++.+++++.+++.... .+++++++....+| ++..++++++++.+++++++.+|.+ .+..
T Consensus 269 ~~~~~i~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 329 (375)
T TIGR01910 269 EVKQIIEDVVKALSKS-------------------DGWLYENEPVVKWSGPNETPPDSRLVKALEAIIKKVRGIEPEVLV 329 (375)
T ss_pred HHHHHHHHHHHHHhhc-------------------CcHHhhCCCeeeecCCcCCCCCCHHHHHHHHHHHHHhCCCCeEee
Confidence 9999999999875421 12334443333455 6778899999999999999988864 4556
Q ss_pred cccCcchHHHHhhcCCcEEEEcCCC--CccccchH
Q 022886 239 ITGTLPLIRELQDEGFDVQTAGYGM--PPLQFTSF 271 (290)
Q Consensus 239 ~~gg~d~~~~~~~~g~~~v~~Gpg~--~~~~~~~~ 271 (290)
+.|++| ++++.+.|+|++.||||. ..|..+|.
T Consensus 330 ~~g~tD-~~~~~~~gip~v~~Gpg~~~~~H~~~E~ 363 (375)
T TIGR01910 330 STGGTD-ARFLRKAGIPSIVYGPGDLETAHQVNEY 363 (375)
T ss_pred eccchh-HHHHHHcCCcEEEECCCCccccCCCCce
Confidence 778888 677888899999999984 35654443
No 6
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=7.8e-32 Score=248.96 Aligned_cols=249 Identities=19% Similarity=0.241 Sum_probs=198.0
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCC-CceeeeceeEEEEEEEEecCCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFH 80 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~-~i~~~~~g~~~~~v~v~G~~~H 80 (290)
+.|++.+ +++|.|+|++|||+|+ .|++++++++.. ++|+++++||+.. .++.+++|..+++|+++|+++|
T Consensus 127 ~~l~~~~---~~~v~~~~~~~EE~g~---~G~~~~~~~~~~---~~d~~i~~~~~~~~~i~~~~~G~~~~~i~v~G~~~H 197 (394)
T PRK08651 127 ERLDPAG---DGNIELAIVPDEETGG---TGTGYLVEEGKV---TPDYVIVGEPSGLDNICIGHRGLVWGVVKVYGKQAH 197 (394)
T ss_pred HHHHhcC---CCCEEEEEecCccccc---hhHHHHHhccCC---CCCEEEEecCCCCCceEEecccEEEEEEEEEEeccc
Confidence 4455444 7899999999999987 799999987643 3689999999876 7899999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeE--EecCCCccceeCCceEEEEEEEECCCCC
Q 022886 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQ--WSYPGGGINQIPGECTVSGDVRLTPFYN 158 (290)
Q Consensus 81 s~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--i~~gg~~~n~vP~~a~~~~~iR~~p~~~ 158 (290)
++.|+.|.||+..+++++++|++...+......- ........+++++. |+ +|...|+||++|++.+|+|++|+++
T Consensus 198 ~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~--~~~~~~~~~~~ig~~~i~-gG~~~nviP~~a~~~~diR~~~~~~ 274 (394)
T PRK08651 198 ASTPWLGINAFEAAAKIAERLKSSLSTIKSKYEY--DDERGAKPTVTLGGPTVE-GGTKTNIVPGYCAFSIDRRLIPEET 274 (394)
T ss_pred cCCCccccCHHHHHHHHHHHHHHHHHhhhccccc--cccccCCCceeecceeee-CCCCCCccCCEEEEEEEeeeCCCCC
Confidence 9999999999999999999997653221111000 00011235678888 88 9999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCC-CCcc
Q 022886 159 VTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGH-VNPY 237 (290)
Q Consensus 159 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~-~~~~ 237 (290)
.+++.+.+++.+++.... +++++++++...+|++..++++++++.+++++++.+|. +.+.
T Consensus 275 ~e~i~~~i~~~~~~~~~~-------------------~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~g~~~~~~ 335 (394)
T PRK08651 275 AEEVRDELEALLDEVAPE-------------------LGIEVEFEITPFSEAFVTDPDSELVKALREAIREVLGVEPKKT 335 (394)
T ss_pred HHHHHHHHHHHHHHHhhc-------------------cCCCeeEEEecccCCccCCCCCHHHHHHHHHHHHHhCCCCcee
Confidence 999999999999876432 23456666666788888888999999999999998886 4455
Q ss_pred ccccCcchHHHHhhcCCcEEEEcCCCC--ccc---------cchHHHHHHHHHHHH
Q 022886 238 SITGTLPLIRELQDEGFDVQTAGYGMP--PLQ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 238 ~~~gg~d~~~~~~~~g~~~v~~Gpg~~--~~~---------~~~~~~iy~~~~~~~ 282 (290)
.+.|++| +++|...|+|++.||||.. .|. +...+++|.+++.++
T Consensus 336 ~~~g~tD-~~~~~~~gip~v~~Gpg~~~~~H~~~E~i~~~~l~~~~~i~~~~i~~l 390 (394)
T PRK08651 336 ISLGGTD-ARFFGAKGIPTVVYGPGELELAHAPDEYVEVKDVEKAAKVYEEVLKRL 390 (394)
T ss_pred eecCccc-HHHHhhCCCcEEEECCCChHhcCCCCceeEHHHHHHHHHHHHHHHHHh
Confidence 6778888 5667888999999999874 444 567788888877664
No 7
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=100.00 E-value=1e-31 Score=246.30 Aligned_cols=244 Identities=20% Similarity=0.194 Sum_probs=189.8
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCC-----CceeeeceeEEEEEEEEe
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~v~v~G 76 (290)
+.|++.+..++++|+|+|++|||+++. .|++.+++.......++|++|++||+.. .++.+++|..+++++++|
T Consensus 109 ~~l~~~~~~~~~~v~~~~~~dEE~~~~--~G~~~~~~~~~~~~~~~d~~i~~ep~~~~~~~~~i~~~~~G~~~~~v~v~G 186 (370)
T TIGR01246 109 ERFVKKNPDHKGSISLLITSDEEGTAI--DGTKKVVETLMARDELIDYCIVGEPSSVKKLGDVIKNGRRGSITGNLTIKG 186 (370)
T ss_pred HHHHHhcCCCCCcEEEEEEeccccCCC--cCHHHHHHHHHhcCCCCCEEEEcCCCCcccCCceEEEeeeEEEEEEEEEEc
Confidence 456666667889999999999998752 5999998643222345799999999743 367899999999999999
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCC-ccceeCCceEEEEEEEECC
Q 022886 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTP 155 (290)
Q Consensus 77 ~~~Hs~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~-~~n~vP~~a~~~~~iR~~p 155 (290)
+++|++.|+.|.||+..++++++.|+....+ .. ..+..+.+++++.|+ +|. ..|+||++|++.+|+|++|
T Consensus 187 ~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~---~~-----~~~~~~~t~~i~~i~-~g~~~~nvvP~~~~~~~diR~~~ 257 (370)
T TIGR01246 187 IQGHVAYPHLANNPIHKAAPALAELTAIKWD---EG-----NEFFPPTSLQITNIH-AGTGANNVIPGELYVQFNLRFST 257 (370)
T ss_pred cCcccCCcccCCCHHHHHHHHHHHHhhhhhc---cC-----CccCCCCceEeeeee-cCCCCCcccCCceEEEEEEecCC
Confidence 9999999999999999999999998764221 10 112335788999999 775 6899999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCC-
Q 022886 156 FYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV- 234 (290)
Q Consensus 156 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~- 234 (290)
+++.+++.+.|++.+++. +..+++++....+|+..+ |+++++.+++++++.+|.+
T Consensus 258 ~~~~~~v~~~i~~~~~~~-----------------------~~~~~v~~~~~~~p~~~~-~~~~~~~~~~a~~~~~g~~~ 313 (370)
T TIGR01246 258 EVSDEILKQRVEAILDQH-----------------------GLDYDLEWSLSGEPFLTN-DGKLIDKAREAIEETNGIKP 313 (370)
T ss_pred CCCHHHHHHHHHHHHHHc-----------------------CCCEEEEEecCCcceeCC-CCHHHHHHHHHHHHHhCCCC
Confidence 999999988888877642 234555555556666665 8999999999999988864
Q ss_pred CccccccCcchHHHHhhcCCcEEEEcCCCC-ccc---------cchHHHHHHHHHHH
Q 022886 235 NPYSITGTLPLIRELQDEGFDVQTAGYGMP-PLQ---------FTSFHSVYKTLIQK 281 (290)
Q Consensus 235 ~~~~~~gg~d~~~~~~~~g~~~v~~Gpg~~-~~~---------~~~~~~iy~~~~~~ 281 (290)
.+..++|++| ++++...|+|++.||||.. .|+ +.+.+++|..++.+
T Consensus 314 ~~~~~~g~~d-~~~~~~~g~p~~~~Gp~~~~~H~~~E~i~i~~l~~~~~~~~~~l~~ 369 (370)
T TIGR01246 314 ELSTGGGTSD-GRFIALMGAEVVEFGPVNATIHKVNECVSIEDLEKLSDVYQDLLEN 369 (370)
T ss_pred ceecCCCCch-HHHHHHcCCCEEEecCCcccCCCCCceeEHHHHHHHHHHHHHHHHh
Confidence 3445667777 6778888999999999863 343 56677777777643
No 8
>PRK08652 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=2.2e-31 Score=241.86 Aligned_cols=226 Identities=19% Similarity=0.216 Sum_probs=181.8
Q ss_pred CceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCCCceeeeceeEEEEEEEEecCCCCCCCCCCCCH
Q 022886 11 LKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINP 90 (290)
Q Consensus 11 ~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~v~v~G~~~Hs~~p~~g~NA 90 (290)
++++|.|+|++|||.|+ .|++.+++.. ++|++|++||+.+.++++++|..+++|+++|+++|++.|+.|.||
T Consensus 107 ~~~~v~~~~~~dEE~g~---~G~~~~~~~~-----~~d~~i~~ep~~~~i~~~~~g~~~~~i~~~G~~~H~s~p~~g~nA 178 (347)
T PRK08652 107 EDLNVGIAFVSDEEEGG---RGSALFAERY-----RPKMAIVLEPTDLKVAIAHYGNLEAYVEVKGKPSHGACPESGVNA 178 (347)
T ss_pred cCCCEEEEEecCcccCC---hhHHHHHHhc-----CCCEEEEecCCCCceeeecccEEEEEEEEEeeecccCCCCcCcCH
Confidence 46799999999999987 7999998752 358999999998889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHHHHHHH
Q 022886 91 LELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 170 (290)
Q Consensus 91 i~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l 170 (290)
+..+++++.+|+++.... .. .+. .+++++.|+ ||...|+||++|++.+|+|++|..+.+++.+++++.+
T Consensus 179 i~~~a~~i~~l~~~~~~~-~~-------~~~--~~~~~~~i~-gg~~~nviP~~~~~~~diR~~~~~~~~~v~~~i~~~~ 247 (347)
T PRK08652 179 IEKAFEMLEKLKELLKAL-GK-------YFD--PHIGIQEII-GGSPEYSIPALCRLRLDARIPPEVEVEDVLDEIDPIL 247 (347)
T ss_pred HHHHHHHHHHHHHHHHhh-hc-------ccC--CCCcceeee-cCCCCCccCCcEEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 999999999998753221 10 011 245677788 9999999999999999999999999999999988888
Q ss_pred HHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCC-CccccccCcchHHHH
Q 022886 171 DDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSITGTLPLIREL 249 (290)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~-~~~~~~gg~d~~~~~ 249 (290)
++. +. ++++...+|++.+++|+++++.+++++++. |.+ .+..+.|++| +++|
T Consensus 248 ~~~-----------------------~v--~~~~~~~~~~~~~~~~~~lv~~l~~a~~~~-g~~~~~~~~~g~tD-a~~~ 300 (347)
T PRK08652 248 DEY-----------------------TV--KYEYTEIWDGFELDEDEEIVQLLEKAMKEV-GLEPEFTVMRSWTD-AINF 300 (347)
T ss_pred Hhc-----------------------Cc--eEEEeccCCcccCCCCCHHHHHHHHHHHHh-CCCCCcCcCCccch-hHHH
Confidence 641 22 333334457777788999999999999998 754 4556778887 6767
Q ss_pred hhcCCcEEEEcCCCC--ccc---------cchHHHHHHHHHHHH
Q 022886 250 QDEGFDVQTAGYGMP--PLQ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 250 ~~~g~~~v~~Gpg~~--~~~---------~~~~~~iy~~~~~~~ 282 (290)
...|+|++.||||.. .|+ +.+.+++|.+++.+.
T Consensus 301 ~~~gip~v~~Gpg~~~~~H~~nE~i~i~~l~~~~~~l~~~~~~~ 344 (347)
T PRK08652 301 RYNGTKTVVWGPGELDLCHTKFERIDVREVEKAKEFLKALNEIL 344 (347)
T ss_pred HHCCCCEEEECCCchhhcCCCCceeeHHHHHHHHHHHHHHHHHH
Confidence 778999999999973 454 556677777766543
No 9
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=100.00 E-value=2.6e-31 Score=242.91 Aligned_cols=230 Identities=17% Similarity=0.198 Sum_probs=181.1
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCCCceeeeceeEEEEEEEEecCCCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~v~v~G~~~Hs 81 (290)
++|++. .++++|.|+|++|||+|+ .|++++++++. +++|+++++||+...++.+++|..+++|+++|+++|+
T Consensus 111 ~~l~~~--~~~~~v~~~~~~~EE~g~---~G~~~~~~~~~---~~~d~~i~~ep~~~~~~~~~~G~~~~~v~v~G~~~Hs 182 (364)
T TIGR01892 111 PDLAAE--QLKKPLHLALTADEEVGC---TGAPKMIEAGA---GRPRHAIIGEPTRLIPVRAHKGYASAEVTVRGRSGHS 182 (364)
T ss_pred HHHHhc--CcCCCEEEEEEeccccCC---cCHHHHHHhcC---CCCCEEEECCCCCceeEEeeceEEEEEEEEEcccccc
Confidence 456654 467899999999999987 89999998764 3578999999998877889999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcC-CCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChH
Q 022886 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE-TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (290)
Q Consensus 82 ~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~ 160 (290)
+.|+.|.||+..+++++.+|++.... +.... ....|. ..++++++.|+ ||...|+||++|++.+|+|++|+++.+
T Consensus 183 ~~p~~g~nAi~~~~~~i~~l~~~~~~-~~~~~--~~~~~~~~~~~~~i~~i~-gg~~~nviP~~~~~~~diR~~p~~~~~ 258 (364)
T TIGR01892 183 SYPDSGVNAIFRAGRFLQRLVHLADT-LLRED--LDEGFTPPYTTLNIGVIQ-GGKAVNIIPGACEFVFEWRPIPGMDPE 258 (364)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHHH-hccCC--CCccCCCCCceEEEeeee-cCCCCcccCCeEEEEEEeecCCCCCHH
Confidence 99999999999999999999865321 11000 000111 23688999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCCCccccc
Q 022886 161 DVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSIT 240 (290)
Q Consensus 161 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~~~~~~~ 240 (290)
++.+.|++.+.+..+. .++.++++++...+|++.+++|+++++.+++++ +.++. ...
T Consensus 259 ~v~~~i~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~-~~~ 315 (364)
T TIGR01892 259 ELLQLLETIAQALVRD------------------EPGFEVQIEVVSTDPGVNTEPDAELVAFLEELS----GNAPE-VVS 315 (364)
T ss_pred HHHHHHHHHHHHHHhh------------------CCCceEEEEEccCCCCcCCCCCCHHHHHHHHHh----CCCCc-eec
Confidence 9999999998875431 113456666666788888889999999887643 44322 345
Q ss_pred cCcchHHHHhhcCCcEEEEcCCCC--ccc
Q 022886 241 GTLPLIRELQDEGFDVQTAGYGMP--PLQ 267 (290)
Q Consensus 241 gg~d~~~~~~~~g~~~v~~Gpg~~--~~~ 267 (290)
+++| +++|...|+|++.||||.. .|+
T Consensus 316 ~~tD-~~~~~~~gip~v~~Gpg~~~~~H~ 343 (364)
T TIGR01892 316 YGTE-APQFQELGAEAVVCGPGDIRQAHQ 343 (364)
T ss_pred cccc-HHHHHhCCCcEEEECCCChHhCCC
Confidence 6777 6778888999999999974 455
No 10
>PRK06837 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=3.2e-31 Score=247.30 Aligned_cols=256 Identities=13% Similarity=0.136 Sum_probs=199.3
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCCCceeeeceeEEEEEEEEecCCCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~v~v~G~~~Hs 81 (290)
++|++.+..++++|.|+|++|||.++ .|+..++..+. ++|++|+.||+...++++++|..+++|+++|+++|+
T Consensus 151 ~~l~~~~~~~~~~i~~~~~~dEE~~g---~g~~~~~~~~~----~~d~~iv~ep~~~~i~~~~~G~~~~~i~v~G~~~Hs 223 (427)
T PRK06837 151 DALRAAGLAPAARVHFQSVIEEESTG---NGALSTLQRGY----RADACLIPEPTGEKLVRAQVGVIWFRLRVRGAPVHV 223 (427)
T ss_pred HHHHHcCCCCCCcEEEEEEeccccCC---HhHHHHHhcCc----CCCEEEEcCCCCCccccccceeEEEEEEEEeecccc
Confidence 56777887889999999999999887 78888877653 468999999998888999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCC-c-ccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCCh
Q 022886 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHP-K-EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (290)
Q Consensus 82 ~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~-~-~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~ 159 (290)
+.|+.|.||+..+++++++|.....+ ..... . .....+..+.+++++.|+ ||...|+||++|++.+++|+.|+++.
T Consensus 224 ~~p~~g~nAi~~~~~~i~~l~~~~~~-~~~~~~~~~~~~~~~~~~t~ni~~i~-gG~~~nvVP~~~~~~~~ir~~p~~~~ 301 (427)
T PRK06837 224 REAGTGANAIDAAYHLIQALRELEAE-WNARKASDPHFEDVPHPINFNVGIIK-GGDWASSVPAWCDLDCRIAIYPGVTA 301 (427)
T ss_pred CCcccCcCHHHHHHHHHHHHHHHHHH-HhhcccCCCcccCCCCceeEeeeeEe-CCCCCCccCCEEEEEEEEeECCCCCH
Confidence 99999999999999999999865321 11000 0 000011234688999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEec-CCCccccCCCCHHHHHHHHHHHHHhCCC-Ccc
Q 022886 160 TDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE-ATNGVACNLDSRGFHVLCKATEEVVGHV-NPY 237 (290)
Q Consensus 160 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~d~~~~~~l~~a~~~~~g~~-~~~ 237 (290)
+++.+++++.+++...+...+ .+...++++.. ..+|+.+++++++++.+++++++.+|.+ .+.
T Consensus 302 ~~v~~~i~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~a~~~~~g~~~~~~ 366 (427)
T PRK06837 302 ADAQAEIEACLAAAARDDRFL---------------SNNPPEVVWSGFLAEGYVLEPGSEAEAALARAHAAVFGGPLRSF 366 (427)
T ss_pred HHHHHHHHHHHHHHHhcChhh---------------hhCCCeEEEEecccCCcCCCCCCHHHHHHHHHHHHHhCCCCeee
Confidence 999999999998754321100 01123444433 5678889999999999999999988864 445
Q ss_pred ccccCcchHHHHhh-cCCcEEEEcCCCC-ccc---------cchHHHHHHHHHHHH
Q 022886 238 SITGTLPLIRELQD-EGFDVQTAGYGMP-PLQ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 238 ~~~gg~d~~~~~~~-~g~~~v~~Gpg~~-~~~---------~~~~~~iy~~~~~~~ 282 (290)
.++|++| ++++.. .|+|++.||||+. .|+ +.+.+++|..++...
T Consensus 367 ~~~g~tD-a~~~~~~~gip~v~~Gp~~~~~H~~nE~i~i~~l~~~~~~~~~~l~~~ 421 (427)
T PRK06837 367 VTTAYTD-TRFYGLYYGIPALCYGPSGEGIHGFDERVDLESVRKVTKTIALFVAEW 421 (427)
T ss_pred EEeeccc-hHHHhccCCCCEEEECCCCCccCCCCceEEHHHHHHHHHHHHHHHHHH
Confidence 6778888 676774 7999999999874 444 667788888876543
No 11
>PRK07522 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=2.3e-31 Score=245.04 Aligned_cols=253 Identities=17% Similarity=0.234 Sum_probs=192.2
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCCCceeeeceeEEEEEEEEecCCCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~v~v~G~~~Hs 81 (290)
++|++. .++++|.|+|++|||.|+ .|+++|++.......++|+++++||+...++++++|..+++|+++|+++|+
T Consensus 117 ~~l~~~--~~~~~i~~~~~~dEE~g~---~G~~~l~~~~~~~~~~~d~~i~~ep~~~~~~~~~~G~~~~~i~v~G~~~Hs 191 (385)
T PRK07522 117 PELAAA--PLRRPLHLAFSYDEEVGC---LGVPSMIARLPERGVKPAGCIVGEPTSMRPVVGHKGKAAYRCTVRGRAAHS 191 (385)
T ss_pred HHHHhC--CCCCCEEEEEEeccccCC---ccHHHHHHHhhhcCCCCCEEEEccCCCCeeeeeecceEEEEEEEEeecccc
Confidence 456555 467899999999999987 899999976432344579999999998889999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhcCCCC--CCCcccccCcCC-CCceeeeEEecCCCccceeCCceEEEEEEEECCCCC
Q 022886 82 GLPHKAINPLELAMEALKVIQTRFYKDFP--PHPKEQVYGFET-PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (290)
Q Consensus 82 ~~p~~g~NAi~~~~~~i~~l~~~~~~~~~--~~~~~~~~~~~~-~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~ 158 (290)
|.|+.|.||+..+++++..|++...+... +.+ ..|.. .++++++.|+ +|...|+||++|++.+|+|++|+.+
T Consensus 192 ~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~----~~~~~~~~t~~i~~i~-gG~~~nviP~~a~~~~diR~~~~~~ 266 (385)
T PRK07522 192 SLAPQGVNAIEYAARLIAHLRDLADRLAAPGPFD----ALFDPPYSTLQTGTIQ-GGTALNIVPAECEFDFEFRNLPGDD 266 (385)
T ss_pred CCCccCcCHHHHHHHHHHHHHHHHHHHhhcCCCC----cCCCCCcceeEEeeee-cCccccccCCceEEEEEEccCCCCC
Confidence 99999999999999999999875321111 110 01111 2578999999 9999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHh-hcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCCCcc
Q 022886 159 VTDVMKRLQEYVDDIN-ENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPY 237 (290)
Q Consensus 159 ~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~~~~ 237 (290)
.+++.+++++.+++.. .... . ...+++++++....+|++..++++++++.+++++ +.+...
T Consensus 267 ~~~i~~~i~~~i~~~~~~~~~---~-----------~~~~~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~ 328 (385)
T PRK07522 267 PEAILARIRAYAEAELLPEMR---A-----------VHPEAAIEFEPLSAYPGLDTAEDAAAARLVRALT----GDNDLR 328 (385)
T ss_pred HHHHHHHHHHHHHhhcchhhh---h-----------hcCCCcEEEEeccCCCCCCCCCCcHHHHHHHHHh----CCCCcc
Confidence 9999999998887621 1000 0 1124556666556789998888999999887654 433333
Q ss_pred ccccCcchHHHHhhcCCcEEEEcCCCC--ccc---------cchHHHHHHHHHHHHH
Q 022886 238 SITGTLPLIRELQDEGFDVQTAGYGMP--PLQ---------FTSFHSVYKTLIQKTW 283 (290)
Q Consensus 238 ~~~gg~d~~~~~~~~g~~~v~~Gpg~~--~~~---------~~~~~~iy~~~~~~~~ 283 (290)
...+++| +++|+..|+|++.||||+. .|. +.+.+++|.+++.+.+
T Consensus 329 ~~~~~td-~~~~~~~gip~v~~Gpg~~~~~H~~~E~i~i~~l~~~~~~~~~~~~~~~ 384 (385)
T PRK07522 329 KVAYGTE-AGLFQRAGIPTVVCGPGSIEQAHKPDEFVELAQLAACEAFLRRLLASLA 384 (385)
T ss_pred eEeeecc-hHHhccCCCCEEEECCCChhhCCCCCccccHHHHHHHHHHHHHHHHHHh
Confidence 3456778 5667778999999999864 444 5677778888776553
No 12
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=100.00 E-value=4.8e-31 Score=244.02 Aligned_cols=249 Identities=22% Similarity=0.266 Sum_probs=190.0
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHc--cccccCCCCcEEEec---CCCCCceeeeceeEEEEEEEEe
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKD--GLLNKLKGGPLYWID---TADKQPCIGTGGMIPWKLHVTG 76 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~--~~~~~~~~d~~i~~e---~~~~~i~~~~~g~~~~~v~v~G 76 (290)
++|++.+..++++|.|+|++|||.|+. .|++++++. +.+.+ .|++++.+ |+...++.+++|..+++|+++|
T Consensus 130 ~~l~~~~~~~~~~v~~~~~~dEE~g~~--~g~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~i~~~~~G~~~~~v~v~G 205 (400)
T PRK13983 130 KALMDLGIRPKYNLGLAFVSDEETGSK--YGIQYLLKKHPELFKK--DDLILVPDAGNPDGSFIEIAEKSILWLKFTVKG 205 (400)
T ss_pred HHHHHhCCCCCCcEEEEEEeccccCCc--ccHHHHHhhcccccCC--CCEEEEecCCCCCCceeEEeecceEEEEEEEEe
Confidence 567778888999999999999998872 489999976 33322 47788744 4555578899999999999999
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcC-CCCceeeeEEecCC-CccceeCCceEEEEEEEEC
Q 022886 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE-TPSTMKPTQWSYPG-GGINQIPGECTVSGDVRLT 154 (290)
Q Consensus 77 ~~~Hs~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~gg-~~~n~vP~~a~~~~~iR~~ 154 (290)
+++|+|.|+.|.||+..++++++.++..+.+.+.... ..+. ...+++++.+. +| ...|+||++|++++|+|++
T Consensus 206 ~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~g~~~~nvvp~~~~~~~diR~~ 280 (400)
T PRK13983 206 KQCHASTPENGINAHRAAADFALELDEALHEKFNAKD----PLFDPPYSTFEPTKKE-ANVDNINTIPGRDVFYFDCRVL 280 (400)
T ss_pred EccccCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccc----cccCCCCcccccceee-cCCcCCcccCCeeEEEEEEEeC
Confidence 9999999999999999999999999873222222110 0111 12456778887 55 6899999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEec-CCCccccCCCCHHHHHHHHHHHHHhCC
Q 022886 155 PFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE-ATNGVACNLDSRGFHVLCKATEEVVGH 233 (290)
Q Consensus 155 p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~d~~~~~~l~~a~~~~~g~ 233 (290)
|+++.+++.+.|++.+++.... .+.++++++.. .++++.+++|+++++.+.+++++.+|.
T Consensus 281 p~~~~~~v~~~l~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~~~~~~~~~~v~~l~~a~~~~~g~ 341 (400)
T PRK13983 281 PDYDLDEVLKDIKEIADEFEEE-------------------YGVKIEVEIVQREQAPPPTPPDSEIVKKLKRAIKEVRGI 341 (400)
T ss_pred CCCCHHHHHHHHHHHHHHhccc-------------------cCcceeEEEeeccCCccCCCCCcHHHHHHHHHHHHhcCC
Confidence 9999999999999998875432 13445565544 567777889999999999999998886
Q ss_pred -CCccccccCcchHHHHhhcCCcEEEEcCCCC-ccc---------cchHHHHHHHHH
Q 022886 234 -VNPYSITGTLPLIRELQDEGFDVQTAGYGMP-PLQ---------FTSFHSVYKTLI 279 (290)
Q Consensus 234 -~~~~~~~gg~d~~~~~~~~g~~~v~~Gpg~~-~~~---------~~~~~~iy~~~~ 279 (290)
+.+..++|++| ++++...|+|++.|||++. .|. +.+.+++|..++
T Consensus 342 ~~~~~~~~g~td-~~~~~~~gip~v~~Gp~~~~~H~~nE~v~i~~l~~~~~~~~~~~ 397 (400)
T PRK13983 342 EPKVGGIGGGTV-AAFLRKKGYPAVVWSTLDETAHQPNEYAKISNLIEDAKVFALLL 397 (400)
T ss_pred CceeeeecCcHH-HHHHHHcCCCEEEeCCccccCCCCCceeeHHHHHHHHHHHHHHH
Confidence 44556777776 7778778999999999864 344 445556665554
No 13
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=100.00 E-value=4.1e-31 Score=244.30 Aligned_cols=247 Identities=13% Similarity=0.073 Sum_probs=189.8
Q ss_pred hhcccccCCCceeEEEEEEecccC-CCCCcccHHHHHHccccccCCCCcEEEecCCCCCceeeeceeEEEEEEEEecCCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEEN-SAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFH 80 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~-g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~v~v~G~~~H 80 (290)
+.|++.+..+++++.|++++|||. ++ .|++++++++. +++|++|++||+...++.+++|..+++|+++|+++|
T Consensus 121 ~~l~~~~~~~~~~v~~~~~~dEE~~~g---~~~~~~~~~~~---~~~d~~i~~ep~~~~i~~g~~G~~~~~v~v~G~~~H 194 (395)
T TIGR03526 121 KIIKDLGLLDDYTLLVTGTVQEEDCDG---LCWQYIIEEDK---IKPEFVVITEPTDMNIYRGQRGRMEIKVTVKGVSCH 194 (395)
T ss_pred HHHHHcCCCCCceEEEEEecccccCCc---HhHHHHHhccC---CCCCEEEecCCCCceEEEEcceEEEEEEEEecCCCc
Confidence 456777777788999999999994 43 67788887543 457999999999888999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCC-ccceeCCceEEEEEEEECCCCCh
Q 022886 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTPFYNV 159 (290)
Q Consensus 81 s~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~-~~n~vP~~a~~~~~iR~~p~~~~ 159 (290)
++.|+.|.||+..+++++.+|++..... ... .+....+++++.|+ +|. ..|+||++|++.+|+|++|+++.
T Consensus 195 s~~p~~g~nAi~~~~~~i~~l~~~~~~~-~~~------~~~~~~~~~v~~i~-~g~~~~nviP~~~~~~~d~R~~~~~~~ 266 (395)
T TIGR03526 195 GSAPERGDNAIYKMAPILKELSQLNANL-VED------PFLGKGTLTVSEIF-FSSPSRCAVADGCTISIDRRLTWGETW 266 (395)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHhhhhh-cCC------cccCccceeeeeee-cCCCCCCccCCeEEEEEEEecCCCCCH
Confidence 9999999999999999999998753211 100 11224688999998 654 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEE-------------EEecCCCccccCCCCHHHHHHHHH
Q 022886 160 TDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTL-------------TFDEATNGVACNLDSRGFHVLCKA 226 (290)
Q Consensus 160 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~p~~~~~~d~~~~~~l~~a 226 (290)
+++.+.+++.++.... +.++++ .....+|++.++.+++++++++++
T Consensus 267 ~~~~~~i~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 325 (395)
T TIGR03526 267 EYALEQIRNLPAVQGA---------------------EAEVEMYEYDRPSYTGLVYPTECYFPTWVLPEDHLITKAALET 325 (395)
T ss_pred HHHHHHHHHHHHhcCC---------------------cceEEEeccccccccccccccccccCccccCCCCHHHHHHHHH
Confidence 9999999888754210 011111 111246888888999999999999
Q ss_pred HHHHhCCCCc-cccccCcchHHHHhhcCCcEEEEcCCCC--ccc---------cchHHHHHHHHHHHHH
Q 022886 227 TEEVVGHVNP-YSITGTLPLIRELQDEGFDVQTAGYGMP--PLQ---------FTSFHSVYKTLIQKTW 283 (290)
Q Consensus 227 ~~~~~g~~~~-~~~~gg~d~~~~~~~~g~~~v~~Gpg~~--~~~---------~~~~~~iy~~~~~~~~ 283 (290)
+++++|..+. ....+++|...++.+.|+|++.||||+. .|+ +.+.+++|..++++.+
T Consensus 326 ~~~~~g~~~~~~~~~~~~~~~~~~~~~g~p~v~~Gpg~~~~aH~~dE~i~i~~l~~~~~~~~~~~~~~~ 394 (395)
T TIGR03526 326 YKRLFGKEPGVDKWTFSTNGVSIMGRHGIPVIGFGPGDEDQAHAPNEKTWKEDLVKAAAMYAAIPTVYL 394 (395)
T ss_pred HHHHhCCCCceeeeeeecccceehhhcCCCEEEECCcchhhccCCCceEEHHHHHHHHHHHHHHHHHhc
Confidence 9999886432 2334455543445668999999999974 454 6677888888877654
No 14
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=100.00 E-value=6.3e-31 Score=243.07 Aligned_cols=246 Identities=14% Similarity=0.093 Sum_probs=187.1
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCCCceeeeceeEEEEEEEEecCCCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~v~v~G~~~Hs 81 (290)
++|++.+..++.+|.|++++|||.++ |.|.+++++.. .+++|++|++||+...++.+++|..+++|+++|+++|+
T Consensus 121 ~~l~~~g~~~~~~i~~~~~~dEE~~~--g~~~~~~~~~~---~~~~d~~iv~ep~~~~i~~g~~G~~~~~v~~~G~~~Hs 195 (395)
T TIGR03320 121 KIIKDLGLLDDYTLLVTGTVQEEDCD--GLCWQYIIEED---GIKPEFVVITEPTDMNIYRGQRGRMEIKVTVKGVSCHG 195 (395)
T ss_pred HHHHHcCCCCCceEEEEecccccccC--chHHHHHHHhc---CCCCCEEEEcCCCccceEEecceEEEEEEEEeeecccc
Confidence 56777777788899999999999753 14556777643 34579999999998889999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCC-ccceeCCceEEEEEEEECCCCChH
Q 022886 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTPFYNVT 160 (290)
Q Consensus 82 ~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~-~~n~vP~~a~~~~~iR~~p~~~~~ 160 (290)
|.|+.|.||+..++++|..|+..... .... .+.++.+++++.|+ +|. ..|+||++|++.+|+|++|+++.+
T Consensus 196 s~p~~g~nAi~~~~~~l~~l~~~~~~-~~~~------~~~~~~t~~v~~i~-~g~~~~NviP~~~~~~~diR~~p~~~~~ 267 (395)
T TIGR03320 196 SAPERGDNAIYKMAPILKELSQLNAN-LVED------PFLGKGTLTVSEIF-FSSPSRCAVADGCTISIDRRLTWGETWE 267 (395)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHh-hcCC------cccCcCceeeeeee-cCCCCcCccCCEEEEEEEEecCCCCCHH
Confidence 99999999999999999999875321 1110 11234678999998 654 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEE-------------EEecCCCccccCCCCHHHHHHHHHH
Q 022886 161 DVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTL-------------TFDEATNGVACNLDSRGFHVLCKAT 227 (290)
Q Consensus 161 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~p~~~~~~d~~~~~~l~~a~ 227 (290)
++.+.|++.+..... ..++++ .....+|++.+++++|+++++++++
T Consensus 268 ~i~~~i~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 326 (395)
T TIGR03320 268 YALEQIRNLPAVQGA---------------------EAKVEMYNYDRPSYTGLVYPTECYFPTWVLPEDHLITKAALETY 326 (395)
T ss_pred HHHHHHHHHHhhcCC---------------------CceEeeeccCcccccccccccccccCccccCCCCHHHHHHHHHH
Confidence 999998887653210 111111 1112478888899999999999999
Q ss_pred HHHhCCCC-ccccccCcchHHHHhhcCCcEEEEcCCCC--ccc---------cchHHHHHHHHHHH
Q 022886 228 EEVVGHVN-PYSITGTLPLIRELQDEGFDVQTAGYGMP--PLQ---------FTSFHSVYKTLIQK 281 (290)
Q Consensus 228 ~~~~g~~~-~~~~~gg~d~~~~~~~~g~~~v~~Gpg~~--~~~---------~~~~~~iy~~~~~~ 281 (290)
++++|.++ .....+++|..+++...|+|++.||||+. +|+ +.+.+++|..++..
T Consensus 327 ~~~~g~~~~~~~~~~~~~~~~~~~~~g~p~v~~Gpg~~~~aH~~nE~v~i~~l~~~~~~~~~~~~~ 392 (395)
T TIGR03320 327 KRLFGKEPGVDKWTFSTNGVSIMGRHGIPVIGFGPGDEDQAHAPNEKTWKEDLVRAAAMYAAIPTV 392 (395)
T ss_pred HHHhCCCCceeecceecccceehhhcCCCEEEECCCchhhccCCCcEEEHHHHHHHHHHHHHHHHH
Confidence 99988753 33345555644556678999999999974 354 55667777776554
No 15
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=100.00 E-value=6.4e-31 Score=241.10 Aligned_cols=242 Identities=15% Similarity=0.139 Sum_probs=180.7
Q ss_pred cCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCCCceeeeceeEEEEEEEEecCCCCCCCCCC
Q 022886 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKA 87 (290)
Q Consensus 8 ~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~v~v~G~~~Hs~~p~~g 87 (290)
+..++++|.|+|++|||+++. ..|++.+++... ..+++|++|++||+.+.++++++|..+++|+++|+++|++.|+.|
T Consensus 124 ~~~~~~~i~~~~~~dEE~~~~-~~G~~~~~~~~~-~~~~~d~~iv~Ept~~~i~~g~~G~~~~~i~v~G~~~H~s~p~~g 201 (373)
T TIGR01900 124 ETELKHDLTLIAYDCEEVAAE-KNGLGHIRDAHP-DWLAADFAIIGEPTGGGIEAGCNGNIRFDVTAHGVAAHSARAWLG 201 (373)
T ss_pred ccCCCCCEEEEEEecccccCC-CCCHHHHHHhCc-ccccCCEEEEECCCCCcccccceeeEEEEEEEEeeccccCCCCCC
Confidence 456889999999999998631 049999997642 223578999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHHHH
Q 022886 88 INPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQ 167 (290)
Q Consensus 88 ~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~ 167 (290)
.||+..+++++.+|+++....... + .+....+++++.|+ ||...|+||++|++++|+|+.|+++.+++.++|+
T Consensus 202 ~NAi~~~~~~i~~l~~l~~~~~~~-~-----~~~~~~t~~v~~I~-GG~~~nvVP~~a~~~~diR~~p~~~~e~~~~~i~ 274 (373)
T TIGR01900 202 DNAIHKAADIINKLAAYEAAEVNI-D-----GLDYREGLNATFCE-GGKANNVIPDEARMHLNFRFAPDKDLAEAKALMM 274 (373)
T ss_pred CCHHHHHHHHHHHHHHhhcccccc-c-----CCcccceEEEEEEe-CCCCCcccCCeEEEEEEEecCCCcCHHHHHHHHH
Confidence 999999999999998753221110 0 11123678999999 9999999999999999999999999999999997
Q ss_pred HHHHHHh----hcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCCCccccccCc
Q 022886 168 EYVDDIN----ENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTL 243 (290)
Q Consensus 168 ~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~~~~~~~gg~ 243 (290)
+.++... +++.+-. ..+ . ...++++.....+++.++.++++++.+.+++++.+|.++. ...|+|
T Consensus 275 ~~~~~~~~~~~~~~~~~~-~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~g~t 342 (373)
T TIGR01900 275 GADAGAELGNGEHVAEGG-EFD---------G-QDGIEIAMEDEAGGALPGLGAPLAQDLIDAVGEEKGRDPL-AKFGWT 342 (373)
T ss_pred hhhhhhhhhHHHHHHhhc-ccc---------c-cccceEEEcccCCCCCCCCCCHHHHHHHHHHHhccCCCcc-cccCCc
Confidence 7654320 0110000 000 0 0124444433445566677899999999999998776433 356778
Q ss_pred chHHHHhhcCCcEEEEcCCCC--ccccchH
Q 022886 244 PLIRELQDEGFDVQTAGYGMP--PLQFTSF 271 (290)
Q Consensus 244 d~~~~~~~~g~~~v~~Gpg~~--~~~~~~~ 271 (290)
|. ++|...|+|++.||||+. +|+.+|.
T Consensus 343 D~-~~~~~~gip~v~~Gpg~~~~aH~~dE~ 371 (373)
T TIGR01900 343 DV-ARFSALGIPALNFGAGDPLFAHKHDEQ 371 (373)
T ss_pred cH-HHHHhcCCCEEEeCCCChhhccCCCCC
Confidence 85 546678999999999985 5665554
No 16
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=100.00 E-value=1e-30 Score=237.65 Aligned_cols=225 Identities=17% Similarity=0.183 Sum_probs=181.0
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCC-CCceeeeceeEEEEEEEEecCCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-KQPCIGTGGMIPWKLHVTGKLFH 80 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~-~~i~~~~~g~~~~~v~v~G~~~H 80 (290)
++|++.+ .+|.|+|++|||+|+ .|++++++++. ++|+++++||+. ..++++++|..+++|+++|+++|
T Consensus 105 ~~l~~~~----~~i~~~~~~dEE~g~---~G~~~l~~~~~----~~d~~i~~ep~~~~~i~~~~kG~~~~~i~v~G~~~H 173 (346)
T PRK00466 105 WLLNEKG----IKVMVSGLADEESTS---IGAKELVSKGF----NFKHIIVGEPSNGTDIVVEYRGSIQLDIMCEGTPEH 173 (346)
T ss_pred HHHHHcC----CCEEEEEEcCcccCC---ccHHHHHhcCC----CCCEEEEcCCCCCCceEEEeeEEEEEEEEEEeeccc
Confidence 3455544 468999999999987 79999998752 468999999986 46889999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChH
Q 022886 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (290)
Q Consensus 81 s~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~ 160 (290)
+|.|+ .||+..+++++.+|.+.. ... ...+++++.|+ ||...|+||++|++.+|+|++|+.+.+
T Consensus 174 as~p~--~nAi~~~~~~l~~l~~~~-~~~------------~~~t~~~~~i~-gG~~~NvvP~~a~~~~diR~~p~~~~~ 237 (346)
T PRK00466 174 SSSAK--SNLIVDISKKIIEVYKQP-ENY------------DKPSIVPTIIR-AGESYNVTPAKLYLHFDVRYAINNKRD 237 (346)
T ss_pred cCCCC--cCHHHHHHHHHHHHHhcc-ccC------------CCCcceeeEEe-cCCcCcccCCceEEEEEEEeCCCCCHH
Confidence 99886 599999999999886531 111 13578999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCC-CCcccc
Q 022886 161 DVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGH-VNPYSI 239 (290)
Q Consensus 161 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~-~~~~~~ 239 (290)
++.+++++.+.+ ++++....+|++.++.++++++++++++++. |. +.+..+
T Consensus 238 ~v~~~i~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~lv~~l~~a~~~~-g~~~~~~~~ 289 (346)
T PRK00466 238 DLISEIKDKFQE---------------------------CGLKIVDETPPVKVSINNPVVKALMRALLKQ-NIKPRLVRK 289 (346)
T ss_pred HHHHHHHHHHhh---------------------------CcEeeccCCCCcccCCCCHHHHHHHHHHHHh-CCCceEEec
Confidence 998888777654 1223334678888889999999999999985 75 444556
Q ss_pred ccCcchHHHHhhcCCcEEEEcCCCC--ccc---------cchHHHHHHHHHHHH
Q 022886 240 TGTLPLIRELQDEGFDVQTAGYGMP--PLQ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 240 ~gg~d~~~~~~~~g~~~v~~Gpg~~--~~~---------~~~~~~iy~~~~~~~ 282 (290)
+|++| +++|.+.+.|++.||||.. +|+ +.+.+++|..++.+.
T Consensus 290 ~g~tD-~~~~~~~~~~~v~fGpg~~~~aH~~nE~i~i~~l~~~~~~~~~~i~~l 342 (346)
T PRK00466 290 AGTSD-MNILQKITTSIATYGPGNSMLEHTNQEKITLDEIYIAVKTYMLAIEEL 342 (346)
T ss_pred CCcCc-HHHHHHhCCCEEEECCCCcccccCCCceeeHHHHHHHHHHHHHHHHHH
Confidence 78888 5667777899999999875 454 566778888877653
No 17
>PRK13004 peptidase; Reviewed
Probab=99.98 E-value=1.3e-30 Score=241.23 Aligned_cols=258 Identities=14% Similarity=0.119 Sum_probs=188.3
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCCCceeeeceeEEEEEEEEecCCCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~v~v~G~~~Hs 81 (290)
++|++.+..++++|.|+|++|||.++ |.|+++++++. .+++|+++++||+...++++++|..+++|+++|+++|+
T Consensus 123 ~~l~~~~~~~~~~i~~~~~~~EE~~~--g~~~~~~~~~~---~~~~d~~i~~e~~~~~i~~~~~G~~~~~v~v~G~~~Ha 197 (399)
T PRK13004 123 KIIKDLGLDDEYTLYVTGTVQEEDCD--GLCWRYIIEED---KIKPDFVVITEPTDLNIYRGQRGRMEIRVETKGVSCHG 197 (399)
T ss_pred HHHHhcCCCCCCeEEEEEEcccccCc--chhHHHHHHhc---CCCCCEEEEccCCCCceEEecceEEEEEEEEecccccc
Confidence 56778887889999999999999642 16888888753 24579999999998889999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHH
Q 022886 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD 161 (290)
Q Consensus 82 ~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~ 161 (290)
+.|+.|.||+..+++++..|+..... ... ..+..+.+++++.|..|+...|+||++|++.+|+|++|+++.++
T Consensus 198 ~~p~~g~nAi~~~~~~i~~l~~~~~~-~~~------~~~~~~~~~~v~~i~~g~~~~nvvP~~~~~~~diR~~~~~~~~~ 270 (399)
T PRK13004 198 SAPERGDNAIYKMAPILNELEELNPN-LKE------DPFLGKGTLTVSDIFSTSPSRCAVPDSCAISIDRRLTVGETWES 270 (399)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhccc-ccc------CCcCCCceEEEeeeecCCCCCCccCCEEEEEEEEcCCCCCCHHH
Confidence 99999999999999999999875321 111 01223457888988833458999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc--ccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCCC-ccc
Q 022886 162 VMKRLQEYVDDINEN--IEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYS 238 (290)
Q Consensus 162 ~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~~-~~~ 238 (290)
+.+.+++.+.....+ +.......| .+ ...+++....+|++.+++++++++.+++++++.+|.++ ...
T Consensus 271 v~~~i~~~~~~~~~~~~v~~~~~~~~---------~~-~~~~~~~~~~~p~~~~~~~~~~~~~l~~a~~~~~g~~~~~~~ 340 (399)
T PRK13004 271 VLAEIRALPAVKKANAKVSMYNYDRP---------SY-TGLVYPTECYFPTWLYPEDHEFVKAAVEAYKGLFGKAPEVDK 340 (399)
T ss_pred HHHHHHHHHhhccccceEEEecccCC---------Cc-ccccccccccccccccCCCCHHHHHHHHHHHHHhCCCCeecc
Confidence 998888874321000 000000000 00 00122233357888888999999999999999988643 333
Q ss_pred cccCcchHHHHhhcCCcEEEEcCCCC--ccc---------cchHHHHHHHHHHH
Q 022886 239 ITGTLPLIRELQDEGFDVQTAGYGMP--PLQ---------FTSFHSVYKTLIQK 281 (290)
Q Consensus 239 ~~gg~d~~~~~~~~g~~~v~~Gpg~~--~~~---------~~~~~~iy~~~~~~ 281 (290)
..+++|.+.+++..|+|++.||||.. .|. +.+.+++|..++..
T Consensus 341 ~~~~td~~~~~~~~Gip~v~~Gpg~~~~aH~~nE~i~i~~l~~~~~~~~~~~~~ 394 (399)
T PRK13004 341 WTFSTNGVSIAGRAGIPTIGFGPGKEPLAHAPNEYTWKEQLVKAAAMYAAIPKS 394 (399)
T ss_pred cccccCCeEEehhcCCCEEEECCCcccccCCCCceeEHHHHHHHHHHHHHHHHH
Confidence 44455544444568999999999874 454 55667777776654
No 18
>PRK08737 acetylornithine deacetylase; Provisional
Probab=99.98 E-value=2.5e-30 Score=236.30 Aligned_cols=233 Identities=11% Similarity=0.083 Sum_probs=172.3
Q ss_pred CceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCCCceeeeceeEEEEEEEEecCCCCCCC-CCCCC
Q 022886 11 LKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLP-HKAIN 89 (290)
Q Consensus 11 ~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~v~v~G~~~Hs~~p-~~g~N 89 (290)
+.++|.|+|++|||.|+. .|++.+++.+. ++|++|++||+...++++++|..+++|+++|+++|+|.| +.|.|
T Consensus 117 ~~~~v~~~~~~dEE~g~~--~g~~~~~~~~~----~~~~~iv~Ept~~~~~~~~kG~~~~~v~v~Gk~aHas~p~~~G~N 190 (364)
T PRK08737 117 GDGDAAFLFSSDEEANDP--RCVAAFLARGI----PYEAVLVAEPTMSEAVLAHRGISSVLMRFAGRAGHASGKQDPSAS 190 (364)
T ss_pred cCCCEEEEEEcccccCch--hhHHHHHHhCC----CCCEEEEcCCCCceeEEecceeEEEEEEEEeeccccCCCcccCCC
Confidence 467999999999998862 58899988753 468999999999989999999999999999999999998 69999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHHHHHH
Q 022886 90 PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEY 169 (290)
Q Consensus 90 Ai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~ 169 (290)
||..++++|.++.+.......+. ..-..+.+++++.|+ ||...|+||++|++++|+|+.|+++.+++.+++++.
T Consensus 191 AI~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~t~~vg~i~-GG~~~NvVP~~a~~~~d~R~~p~~~~e~v~~~i~~~ 264 (364)
T PRK08737 191 ALHQAMRWGGQALDHVESLAHAR-----FGGLTGLRFNIGRVE-GGIKANMIAPAAELRFGFRPLPSMDVDGLLATFAGF 264 (364)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhc-----cCCCCCCceEEeeEe-cCCCCCcCCCceEEEEEeeeCCCCCHHHHHHHHHHH
Confidence 99999999988654322111110 000124588999999 999999999999999999999999999998888666
Q ss_pred HHHHhhcccccccCCCccccccCCCCcceeEEEEEe-cCCCccccCCCCHHHHHHHHHHHHHhCCCCccccccCcchHHH
Q 022886 170 VDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFD-EATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIRE 248 (290)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~d~~~~~~l~~a~~~~~g~~~~~~~~gg~d~~~~ 248 (290)
++.. ...+++.+. ..+|++..+++ ++++.+.+.+.+..|.+......+++| +++
T Consensus 265 ~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~tD-a~~ 319 (364)
T PRK08737 265 AEPA-----------------------AATFEETFRGPSLPSGDIARA-EERRLAARDVADALDLPIGNAVDFWTE-ASL 319 (364)
T ss_pred HHHc-----------------------CCceEEEeccCCCCCcccCcc-hHHHHHHHHHHhhhcCCCCceeccccC-HHH
Confidence 5541 112333332 24566655544 566555444444446543334456777 676
Q ss_pred HhhcCCcEEEEcCCCC--ccc---------cchHHHHHHHHHH
Q 022886 249 LQDEGFDVQTAGYGMP--PLQ---------FTSFHSVYKTLIQ 280 (290)
Q Consensus 249 ~~~~g~~~v~~Gpg~~--~~~---------~~~~~~iy~~~~~ 280 (290)
|...|+|++.||||+. +|. +.+.+++|.+++.
T Consensus 320 ~~~~Gip~v~~GpG~~~~aHt~dE~i~i~~l~~~~~~~~~~~~ 362 (364)
T PRK08737 320 FSAAGYTALVYGPGDIAQAHTADEFVTLDQLQRYAESVHRIIN 362 (364)
T ss_pred HHHcCCCEEEECCCChhhccCCCcceeHHHHHHHHHHHHHHhc
Confidence 8888999999999974 454 5666777777653
No 19
>PRK07338 hypothetical protein; Provisional
Probab=99.97 E-value=1.8e-30 Score=240.50 Aligned_cols=239 Identities=15% Similarity=0.081 Sum_probs=186.5
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCC--CCceeeeceeEEEEEEEEecCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~--~~i~~~~~g~~~~~v~v~G~~~ 79 (290)
++|++.+.+++++|.|+|++|||+|+ .|++.+++++.. ++|+++++||+. +.+..+++|..+++|+++|+++
T Consensus 142 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~~~~~~~---~~~~~i~~ep~~~~~~v~~~~kG~~~~~v~v~G~~a 215 (402)
T PRK07338 142 LAFERSPLADKLGYDVLINPDEEIGS---PASAPLLAELAR---GKHAALTYEPALPDGTLAGARKGSGNFTIVVTGRAA 215 (402)
T ss_pred HHHHhcCCCCCCCEEEEEECCcccCC---hhhHHHHHHHhc---cCcEEEEecCCCCCCcEEeecceeEEEEEEEEeEcc
Confidence 56777777788999999999999998 799999987532 357899999974 5677899999999999999999
Q ss_pred CCCC-CCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCC
Q 022886 80 HSGL-PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (290)
Q Consensus 80 Hs~~-p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~ 158 (290)
|++. |+.|.||+..+++++++|++... .. ...+++++.|+ ||...|+||++|++++|+|+.|+++
T Consensus 216 Hs~~~p~~g~nAi~~~~~~i~~l~~l~~-~~------------~~~t~~vg~i~-gG~~~nvVP~~a~~~~d~R~~~~~~ 281 (402)
T PRK07338 216 HAGRAFDEGRNAIVAAAELALALHALNG-QR------------DGVTVNVAKID-GGGPLNVVPDNAVLRFNIRPPTPED 281 (402)
T ss_pred cCCCCcccCccHHHHHHHHHHHHHhhhc-cC------------CCcEEEEEEEe-cCCCCceeccccEEEEEeccCCHHH
Confidence 9995 89999999999999999987522 11 13578999999 9999999999999999999999888
Q ss_pred hHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCC-CHHHHHHHHHHHHHhCCC-Cc
Q 022886 159 VTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLD-SRGFHVLCKATEEVVGHV-NP 236 (290)
Q Consensus 159 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d-~~~~~~l~~a~~~~~g~~-~~ 236 (290)
.+++.+++++.+++..+ .++.+++++....+|++..+++ +++++.++++.++. |.+ ..
T Consensus 282 ~~~v~~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~-g~~~~~ 341 (402)
T PRK07338 282 AAWAEAELKKLIAQVNQ-------------------RHGVSLHLHGGFGRPPKPIDAAQQRLFEAVQACGAAL-GLTIDW 341 (402)
T ss_pred HHHHHHHHHHHHhcccc-------------------CCCeEEEEEccccCCCCCCCcchHHHHHHHHHHHHHc-CCCccc
Confidence 88888888888876431 1134444443335677775544 47999999988774 754 44
Q ss_pred cccccCcchHHHHhhcCCcEE-EEcCCCC-ccc---------cchHHHHHHHHHHH
Q 022886 237 YSITGTLPLIRELQDEGFDVQ-TAGYGMP-PLQ---------FTSFHSVYKTLIQK 281 (290)
Q Consensus 237 ~~~~gg~d~~~~~~~~g~~~v-~~Gpg~~-~~~---------~~~~~~iy~~~~~~ 281 (290)
..++|++| ++++...|+|++ .||||+. .|. +.+.+++|..++.+
T Consensus 342 ~~~~g~tD-a~~~~~~giP~v~~~Gpg~~~~H~~~E~v~i~~l~~~~~~~~~~l~~ 396 (402)
T PRK07338 342 KDSGGVCD-GNNLAAAGLPVVDTLGVRGGNIHSEDEFVILDSLVERAQLSALILMR 396 (402)
T ss_pred ccCCccch-HHHHhhcCCCeEeccCCCCCCCCCccceEehhhHHHHHHHHHHHHHH
Confidence 45778888 566777899999 6999754 454 55667777776654
No 20
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.97 E-value=1.3e-30 Score=241.42 Aligned_cols=254 Identities=17% Similarity=0.160 Sum_probs=186.1
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEe-----cCCC-CCceeeeceeEEEEEEEE
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWI-----DTAD-KQPCIGTGGMIPWKLHVT 75 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~-----e~~~-~~i~~~~~g~~~~~v~v~ 75 (290)
++|++.+..++++|.|+|++|||.|+. .|++++++++.+... |++++. +|+. ..++.+++|..+++|+++
T Consensus 125 ~~l~~~~~~~~~~v~l~~~~dEE~g~~--~G~~~~~~~~~~~~~--~~~~~~d~g~~~~~~~~~i~~~~kG~~~~~l~v~ 200 (400)
T TIGR01880 125 RNLKASGFKFKRTIHISFVPDEEIGGH--DGMEKFAKTDEFKAL--NLGFALDEGLASPDDVYRVFYAERVPWWVVVTAP 200 (400)
T ss_pred HHHHHcCCCCCceEEEEEeCCcccCcH--hHHHHHHHhhhccCC--ceEEEEcCCCcccccccceeEEeeEEEEEEEEEe
Confidence 567777778899999999999998761 499999987654433 445544 3333 467889999999999999
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECC
Q 022886 76 GKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTP 155 (290)
Q Consensus 76 G~~~Hs~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p 155 (290)
|+++|++.|. +.||+..|++++..|+++....+..........+...++++++.|+ ||...|+||++|++.+|+|++|
T Consensus 201 G~~~Hs~~~~-~~nai~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~-gG~~~nvIP~~a~~~~diR~~p 278 (400)
T TIGR01880 201 GNPGHGSKLM-ENTAMEKLEKSVESIRRFRESQFQLLQSNPDLAIGDVTSVNLTKLK-GGVQSNVIPSEAEAGFDIRLAP 278 (400)
T ss_pred cCCCCCCCCC-CCCHHHHHHHHHHHHHHhhHHHHHHHhcCccccccccceeecceec-cCCcCCcCCCccEEEEEEeeCC
Confidence 9999999864 4799999999998887642110000000001112224689999999 9999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCC-ccccCCCCHHHHHHHHHHHHHhCCC
Q 022886 156 FYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATN-GVACNLDSRGFHVLCKATEEVVGHV 234 (290)
Q Consensus 156 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~d~~~~~~l~~a~~~~~g~~ 234 (290)
+++.+++.+.|++.+++... +.++++......| +...+.++++++++++++++.....
T Consensus 279 ~~~~~~~~~~i~~~i~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~lv~~l~~a~~~~~~~~ 337 (400)
T TIGR01880 279 SVDFEEMENRLDEWCADAGE---------------------GVTYEFSQHSGKPLVTPHDDSNPWWVAFKDAVKEMGCTF 337 (400)
T ss_pred CCCHHHHHHHHHHHHhccCC---------------------ceEEEEeecCCCCCCCCCCCCCHHHHHHHHHHHHcCCee
Confidence 99999999998888876311 2334443222333 3345568999999999999863334
Q ss_pred CccccccCcchHHHHhhcCCcEEEEcCCCC----ccc---------cchHHHHHHHHHHHHH
Q 022886 235 NPYSITGTLPLIRELQDEGFDVQTAGYGMP----PLQ---------FTSFHSVYKTLIQKTW 283 (290)
Q Consensus 235 ~~~~~~gg~d~~~~~~~~g~~~v~~Gpg~~----~~~---------~~~~~~iy~~~~~~~~ 283 (290)
.+..+.|++| ++++...|+|++.||||.. .|+ +.+.+++|.+++.+.+
T Consensus 338 ~~~~~~g~tD-a~~~~~~gip~v~fgp~~~~~~~aH~~dE~i~i~~l~~~~~~~~~~l~~~~ 398 (400)
T TIGR01880 338 KPEILPGSTD-SRYIRAAGVPALGFSPMNNTPVLLHDHNEFLNEAVFLRGIEIYQTLISALA 398 (400)
T ss_pred cceeecCcch-HHHHHhCCCCeEEECCccCCcccccCCCCceEHHHHHHHHHHHHHHHHHhh
Confidence 4566788888 6778888999999999742 454 6677888988887764
No 21
>PRK05111 acetylornithine deacetylase; Provisional
Probab=99.97 E-value=6.8e-30 Score=235.19 Aligned_cols=244 Identities=21% Similarity=0.221 Sum_probs=186.3
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCCCceeeeceeEEEEEEEEecCCCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~v~v~G~~~Hs 81 (290)
++|++. .++++|.|+|++|||+|+ .|++++++++. +++|++|++||+...++++++|..+++|+++|+++|+
T Consensus 124 ~~l~~~--~~~~~i~~~~~~~EE~g~---~G~~~~~~~~~---~~~d~~i~~ep~~~~~~~~~~G~~~~~i~v~G~~~H~ 195 (383)
T PRK05111 124 RDIDLT--KLKKPLYILATADEETSM---AGARAFAEATA---IRPDCAIIGEPTSLKPVRAHKGHMSEAIRITGQSGHS 195 (383)
T ss_pred HHHhhc--CCCCCeEEEEEeccccCc---ccHHHHHhcCC---CCCCEEEEcCCCCCceeecccceEEEEEEEEeechhc
Confidence 345443 467899999999999988 79999998754 3468999999998888889999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCc-CCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChH
Q 022886 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGF-ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (290)
Q Consensus 82 ~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~ 160 (290)
+.|+.|.||+..+++++.+++.+......... ...| ....+++++.|+ ||...|+||++|++.+|+|++|+++.+
T Consensus 196 ~~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~---~~~~~~~~~t~~i~~i~-gg~~~NvVP~~~~~~~diR~~p~~~~~ 271 (383)
T PRK05111 196 SDPALGVNAIELMHDVIGELLQLRDELQERYH---NPAFTVPYPTLNLGHIH-GGDAPNRICGCCELHFDIRPLPGMTLE 271 (383)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHHHHhccCC---CccCCCCCCceeEeeee-cCCcCcccCCceEEEEEEecCCCCCHH
Confidence 99999999999999999998765311000000 0011 124678999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEe-cCCCccccCCCCHHHHHHHHHHHHHhCCCCcccc
Q 022886 161 DVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFD-EATNGVACNLDSRGFHVLCKATEEVVGHVNPYSI 239 (290)
Q Consensus 161 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~d~~~~~~l~~a~~~~~g~~~~~~~ 239 (290)
++.+.+++.+.+..+.. +..++++.. ...|++..+.++++++.+++++ |.++ ...
T Consensus 272 ~v~~~i~~~i~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----g~~~-~~~ 327 (383)
T PRK05111 272 DLRGLLREALAPVSERW-------------------PGRITVAPLHPPIPGYECPADHQLVRVVEKLL----GHKA-EVV 327 (383)
T ss_pred HHHHHHHHHHHHHHhhC-------------------CCeEEEeccccCCCCcCCCCCCHHHHHHHHHh----CCCC-cee
Confidence 99999999998765421 344555432 3567787888899888876654 5432 223
Q ss_pred ccCcchHHHHhhcCCcEEEEcCCCC--ccc---------cchHHHHHHHHHHHH
Q 022886 240 TGTLPLIRELQDEGFDVQTAGYGMP--PLQ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 240 ~gg~d~~~~~~~~g~~~v~~Gpg~~--~~~---------~~~~~~iy~~~~~~~ 282 (290)
.+++| ++++...|+|++.||||.. .|+ +...+++|.+++.+.
T Consensus 328 ~~~~D-a~~~~~~g~p~v~~G~g~~~~~H~~~E~v~~~~l~~~~~i~~~~~~~~ 380 (383)
T PRK05111 328 NYCTE-APFIQQLGCPTLVLGPGSIEQAHQPDEYLELSFIKPTRELLRQLIHHF 380 (383)
T ss_pred eeecc-HHHHHhcCCCEEEECCCchHhCcCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 46678 6667778999999999863 343 455667777776554
No 22
>PRK08201 hypothetical protein; Provisional
Probab=99.97 E-value=7.4e-30 Score=240.07 Aligned_cols=256 Identities=18% Similarity=0.188 Sum_probs=186.6
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCC-----CceeeeceeEEEEEEEEe
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~v~v~G 76 (290)
+.|++.+..++++|.|+|++|||.|+ .|+..++++.. +.+++|++|++||+.. .++++++|..+++|+++|
T Consensus 133 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~~ii~e~~~~~~~~~~i~~g~kG~~~~~l~v~G 208 (456)
T PRK08201 133 EALLKVEGTLPVNVKFCIEGEEEIGS---PNLDSFVEEEK-DKLAADVVLISDTTLLGPGKPAICYGLRGLAALEIDVRG 208 (456)
T ss_pred HHHHHhcCCCCCCEEEEEEcccccCC---ccHHHHHHhhH-HhccCCEEEEeCCCcCCCCCEEEEEecCCeEEEEEEEEe
Confidence 45665555778899999999999998 79999987532 2356789999999753 378999999999999999
Q ss_pred cCC--CCCCCCC-CCCHHHHHHHHHHHHHhhhcC--------CCCCCCcc-------------------c-ccCc-----
Q 022886 77 KLF--HSGLPHK-AINPLELAMEALKVIQTRFYK--------DFPPHPKE-------------------Q-VYGF----- 120 (290)
Q Consensus 77 ~~~--Hs~~p~~-g~NAi~~~~~~i~~l~~~~~~--------~~~~~~~~-------------------~-~~~~----- 120 (290)
+++ |||.|.. +.||+..|+++|++|++...+ .+.+.... . ...+
T Consensus 209 ~~~~~Hs~~~~~~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (456)
T PRK08201 209 AKGDLHSGLYGGAVPNALHALVQLLASLHDEHGTVAVEGFYDGVRPLTPEEREEFAALGFDEEKLKRELGVDELFGEEGY 288 (456)
T ss_pred CCCCCccccccCcCCCHHHHHHHHHHhcCCCCCCEecCCcccCCCCCCHHHHHHHHhCCCCHHHHHhhcCCccccCCcch
Confidence 998 9987654 479999999999998753110 00000000 0 0000
Q ss_pred ------CCCCceeeeEEecCC----CccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCccccc
Q 022886 121 ------ETPSTMKPTQWSYPG----GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYV 190 (290)
Q Consensus 121 ------~~~~~i~~~~i~~gg----~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 190 (290)
....+++++.|+ || ...|+||++|++.+|+|+.|+++.+++.++|++++.+...
T Consensus 289 ~~~~~~~~~~t~~i~~i~-gg~~~~~~~NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~l~~~~~--------------- 352 (456)
T PRK08201 289 TALERTWARPTLELNGVY-GGFQGEGTKTVIPAEAHAKITCRLVPDQDPQEILDLIEAHLQAHTP--------------- 352 (456)
T ss_pred HHHHHHHhCCcEEEEeee-cCCCCCCCceEECcceEEEEEEEeCCCCCHHHHHHHHHHHHHHhCC---------------
Confidence 013478888887 55 3489999999999999999999999999999999876311
Q ss_pred cCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCCCccccccCcc--hHHHHhhcCCcEEEEcCCCC---c
Q 022886 191 LPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLP--LIRELQDEGFDVQTAGYGMP---P 265 (290)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~~~~~~~gg~d--~~~~~~~~g~~~v~~Gpg~~---~ 265 (290)
.+.++++......|++.++.++++++++++++++++|.++.....|++. ++.++...|+|++.||||.. .
T Consensus 353 -----~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~g~~~~~~~~gg~~~~~~~~~~~~gip~v~~GpG~~~~~~ 427 (456)
T PRK08201 353 -----AGVRVTIRRFDKGPAFVAPIDHPAIQAAARAYEAVYGTEAAFTRMGGSIPVVETFSSQLHIPIVLMGFGLPSENF 427 (456)
T ss_pred -----CCeEEEEEECCCcCceecCCCCHHHHHHHHHHHHHhCCCceecCCCCcHHHHHHHHHHhCCCEEEecCCCCCCCC
Confidence 1234555544568899999999999999999999988765444445542 24555558999999999953 4
Q ss_pred cc---------cchHHHHHHHHHHHH
Q 022886 266 LQ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 266 ~~---------~~~~~~iy~~~~~~~ 282 (290)
|. +.+.+++|..++.+.
T Consensus 428 H~~nE~v~i~~l~~~~~~l~~~~~~~ 453 (456)
T PRK08201 428 HAPNEHFHLENFDKGLRTLVEYWHQL 453 (456)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 55 445566666665543
No 23
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.97 E-value=7e-30 Score=232.26 Aligned_cols=227 Identities=18% Similarity=0.128 Sum_probs=175.9
Q ss_pred cCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCC-CceeeeceeEEEEEEEEecCCCCCCCCC
Q 022886 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFHSGLPHK 86 (290)
Q Consensus 8 ~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~-~i~~~~~g~~~~~v~v~G~~~Hs~~p~~ 86 (290)
+.+++++|.|++++|||+|+ .|...++.++ .++|++|++||+.. .++++++|..+++|+++|+++|||.|
T Consensus 107 ~~~~~~~i~~~~~~dEE~g~---~~~~~~l~~~----~~~d~~iv~Ept~~~~i~~~~kG~~~~~l~~~G~~~Hss~~-- 177 (348)
T PRK04443 107 EALVRARVSFVGAVEEEAPS---SGGARLVADR----ERPDAVIIGEPSGWDGITLGYKGRLLVTYVATSESFHSAGP-- 177 (348)
T ss_pred cccCCCCEEEEEEcccccCC---hhHHHHHHhc----cCCCEEEEeCCCCccceeeecccEEEEEEEEEeCCCccCCC--
Confidence 44688999999999999998 5666666654 25799999999874 68899999999999999999999987
Q ss_pred CCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHHH
Q 022886 87 AINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166 (290)
Q Consensus 87 g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i 166 (290)
|.||+..|+++++.|.+... ...+ ...+..+.+++++.|+ . ..|+||++|++.+|+|++|+++.+++.+.+
T Consensus 178 g~NAi~~~~~~l~~l~~~~~-~~~~-----~~~~~~~~~~~i~~i~-~--~~n~iP~~~~~~~d~R~~p~~~~~~i~~~i 248 (348)
T PRK04443 178 EPNAAEDAIEWWLAVEAWFE-ANDG-----RERVFDQVTPKLVDFD-S--SSDGLTVEAEMTVGLRLPPGLSPEEAREIL 248 (348)
T ss_pred CCCHHHHHHHHHHHHHHHHh-cCcc-----ccccccccceeeeEEe-c--CCCCCCceEEEEEEEccCCCCCHHHHHHHH
Confidence 79999999999999987532 1011 1112234567888887 3 468999999999999999999999998877
Q ss_pred HHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCCCccccccCcchH
Q 022886 167 QEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLI 246 (290)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~~~~~~~gg~d~~ 246 (290)
++.+.. +++++...+||+.++.++++++.+++++++.++.+......|++| +
T Consensus 249 ~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~tD-~ 300 (348)
T PRK04443 249 DALLPT---------------------------GTVTFTGAVPAYMVSKRTPLARAFRVAIREAGGTPRLKRKTGTSD-M 300 (348)
T ss_pred HHhCCC---------------------------cEEEEecCCCceecCCCCHHHHHHHHHHHHhcCCcceeccccCCc-H
Confidence 777621 234445568899888999999999999999866554444667888 4
Q ss_pred HHHhh-cCCcEEEEcCCCC--ccc---------cchHHHHHHHHHH
Q 022886 247 RELQD-EGFDVQTAGYGMP--PLQ---------FTSFHSVYKTLIQ 280 (290)
Q Consensus 247 ~~~~~-~g~~~v~~Gpg~~--~~~---------~~~~~~iy~~~~~ 280 (290)
++|.+ .|+|++.||||+. .|+ +.+.+++|..++.
T Consensus 301 ~~~~~~~gip~v~~Gpg~~~~~H~~dE~i~i~~l~~~~~~~~~~~~ 346 (348)
T PRK04443 301 NVVAPAWGCPMVAYGPGDSDLDHTPDEHLPLAEYLRAIAVLTDVLE 346 (348)
T ss_pred HHHhhhcCCCEEEECCCCccccCCCcccccHHHHHHHHHHHHHHHh
Confidence 66765 6999999999965 354 4455666666554
No 24
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.97 E-value=4.2e-29 Score=232.65 Aligned_cols=254 Identities=19% Similarity=0.202 Sum_probs=192.4
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCCCceeeeceeEEEEEEEEecC---
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKL--- 78 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~v~v~G~~--- 78 (290)
++|++.+..++++|.|+|++|||+|+ .|++++++++. .+|++|++||+... +.+++|..+++++++|+.
T Consensus 131 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~G~~~~~~~~~----~~d~~i~~ep~~~~-~~~~~G~~~~~~~v~g~~~~~ 202 (421)
T PRK08596 131 QLLHEAGIELPGDLIFQSVIGEEVGE---AGTLQCCERGY----DADFAVVVDTSDLH-MQGQGGVITGWITVKSPQTFH 202 (421)
T ss_pred HHHHHcCCCCCCcEEEEEEeccccCC---cCHHHHHhcCC----CCCEEEECCCCCCc-cccccceeeEEEEEEeecccc
Confidence 56788888899999999999999998 89999998753 46899999998765 589999998888888863
Q ss_pred -------CCCCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCc-CCCCceeeeEEecCCCccceeCCceEEEEE
Q 022886 79 -------FHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGF-ETPSTMKPTQWSYPGGGINQIPGECTVSGD 150 (290)
Q Consensus 79 -------~Hs~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~ 150 (290)
+|++.|+.|.||+..++++|++|+..... +.... ....+ ....+++++.|+ ||...|+||++|++.+|
T Consensus 203 ~~~~~~~~H~~~p~~G~nai~~~~~~i~~l~~~~~~-~~~~~--~~~~~~~~~~t~~v~~i~-gG~~~nvvP~~~~~~~d 278 (421)
T PRK08596 203 DGTRRQMIHAGGGLFGASAIEKMMKIIQSLQELERH-WAVMK--SYPGFPPGTNTINPAVIE-GGRHAAFIADECRLWIT 278 (421)
T ss_pred cccccccccccCCccCcCHHHHHHHHHHHHHHHHHH-Hhhcc--cCccCCCCCcceeeeeee-CCCCCCccCceEEEEEE
Confidence 79999999999999999999999875211 10000 00011 123688999999 99999999999999999
Q ss_pred EEECCCCChHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEE------E-EecCCCccccCCCCHHHHHH
Q 022886 151 VRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTL------T-FDEATNGVACNLDSRGFHVL 223 (290)
Q Consensus 151 iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~p~~~~~~d~~~~~~l 223 (290)
+|+.|+++.+++.++|++.+.+......++... ...+++ + ....+|++.+++++|+++++
T Consensus 279 ~R~~p~~~~~~v~~~i~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 345 (421)
T PRK08596 279 VHFYPNETYEQVIKEIEEYIGKVAAADPWLREN-------------PPQFKWGGESMIEDRGEIFPSLEIDSEHPAVKTL 345 (421)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHHHhcChhhhhC-------------CceeEEecccccccccccCCCccCCCCchHHHHH
Confidence 999999999999999999998754321111100 011111 1 01247889999999999999
Q ss_pred HHHHHHHhCCC-CccccccCcchHHHHhhcCCcEEEEcCCCC--ccc---------cchHHHHHHHHHHH
Q 022886 224 CKATEEVVGHV-NPYSITGTLPLIRELQDEGFDVQTAGYGMP--PLQ---------FTSFHSVYKTLIQK 281 (290)
Q Consensus 224 ~~a~~~~~g~~-~~~~~~gg~d~~~~~~~~g~~~v~~Gpg~~--~~~---------~~~~~~iy~~~~~~ 281 (290)
.+++++.+|.+ .+....|++| ++++...|+|++.||||.. .|. +.+.+++|..++.+
T Consensus 346 ~~a~~~~~g~~~~~~~~~g~tD-~~~~~~~gip~v~~Gpg~~~~~H~~~E~v~i~~~~~~~~~~~~~l~~ 414 (421)
T PRK08596 346 SSAHESVLSKNAILDMSTTVTD-GGWFAEFGIPAVIYGPGTLEEAHSVNEKVEIEQLIEYTKVITAFIYE 414 (421)
T ss_pred HHHHHHHhCCCCeeeEEeeecc-hhhhhhcCCCEEEECCCcccccCCCCceEEHHHHHHHHHHHHHHHHH
Confidence 99999998865 3444567777 6667778999999999963 344 55667777776654
No 25
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.97 E-value=6.3e-29 Score=226.27 Aligned_cols=217 Identities=20% Similarity=0.238 Sum_probs=169.6
Q ss_pred CCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCCCceeeeceeEEEEEEEEecCCCCCCCCCCCC
Q 022886 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAIN 89 (290)
Q Consensus 10 ~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~v~v~G~~~Hs~~p~~g~N 89 (290)
+++++|.|+|++|||.++.. .|++.++.... +.+++|++|++||+.+.++++++|..+++|+++|+++|||.|+.|.|
T Consensus 112 ~~~~~i~~~~~~~EE~~~~~-~G~~~~~~~~~-~~~~~d~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~n 189 (352)
T PRK13007 112 EPAHDLTLVFYDCEEVEAEA-NGLGRLAREHP-EWLAGDFAILLEPTDGVIEAGCQGTLRVTVTFHGRRAHSARSWLGEN 189 (352)
T ss_pred ccCCCeEEEEEecccccCCc-ccHHHHHHhcc-cccCCCEEEEecCCCCceEeeccceEEEEEEEEecccccCCCccCcC
Confidence 47889999999999986511 48899987532 23467999999999888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHHHHHH
Q 022886 90 PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEY 169 (290)
Q Consensus 90 Ai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~ 169 (290)
|+..++++++++++...+..... +.....+++++.|+ ||...|+||++|++.+|+|++|+++.+++.+++++.
T Consensus 190 Ai~~~~~~i~~l~~~~~~~~~~~------~~~~~~~~~~~~i~-gG~~~nviP~~a~~~~diR~~p~~~~~~v~~~i~~~ 262 (352)
T PRK13007 190 AIHKAAPVLARLAAYEPREVVVD------GLTYREGLNAVRIS-GGVAGNVIPDECVVNVNYRFAPDRSLEEALAHVREV 262 (352)
T ss_pred HHHHHHHHHHHHHHhcccccccC------CCCccceeEeEeEe-cCCcCccCCCeEEEEEEEeeCCCCCHHHHHHHHHHH
Confidence 99999999999987532211100 11113578899999 999999999999999999999999999998888776
Q ss_pred HHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCCCccccccCcchHHHH
Q 022886 170 VDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIREL 249 (290)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~~~~~~~gg~d~~~~~ 249 (290)
+.+. . ++++....+++..+.++++++.+.+++ |... ....|++|. ++|
T Consensus 263 ~~~~-----------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~-~~~~g~td~-~~~ 310 (352)
T PRK13007 263 FDGF-----------------------A---EVEVTDLAPGARPGLDHPAAAALVAAV----GGEV-RAKYGWTDV-ARF 310 (352)
T ss_pred hccc-----------------------c---EEEeecccCCCCCCCCCHHHHHHHHHh----CCCC-ccccccchH-HHH
Confidence 6531 1 444445567777778999999988863 4322 234677785 557
Q ss_pred hhcCCcEEEEcCCCC--ccc
Q 022886 250 QDEGFDVQTAGYGMP--PLQ 267 (290)
Q Consensus 250 ~~~g~~~v~~Gpg~~--~~~ 267 (290)
...|+|++.||||.. .|+
T Consensus 311 ~~~Gip~v~~Gpg~~~~~H~ 330 (352)
T PRK13007 311 SALGIPAVNFGPGDPALAHQ 330 (352)
T ss_pred HhCCCCEEEeCCCchhhccC
Confidence 778999999999875 455
No 26
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.97 E-value=6.3e-29 Score=230.69 Aligned_cols=239 Identities=19% Similarity=0.153 Sum_probs=185.9
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCC--CCceeeeceeEEEEEEEEecCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~--~~i~~~~~g~~~~~v~v~G~~~ 79 (290)
++|++.+..++++|.|+|++|||+|+ .|++.++++.. . ++|++|+.||+. +.++++++|..+++|+++|+++
T Consensus 149 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~G~~~~~~~~~-~--~~d~~i~~ep~~~~~~v~~~~~G~~~~~v~v~G~~~ 222 (410)
T PRK06133 149 KILQQLGFKDYGTLTVLFNPDEETGS---PGSRELIAELA-A--QHDVVFSCEPGRAKDALTLATSGIATALLEVKGKAS 222 (410)
T ss_pred HHHHHcCCCCCCCEEEEEECCcccCC---ccHHHHHHHHh-c--cCCEEEEeCCCCCCCCEEEeccceEEEEEEEEeecc
Confidence 46777777788999999999999988 79999997642 2 468999999986 4688999999999999999999
Q ss_pred CCC-CCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCC
Q 022886 80 HSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (290)
Q Consensus 80 Hs~-~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~ 158 (290)
|++ .|+.|.||+..+++++..|++... . . ...+++++.|+ ||...|+||++|++.+|+|+.|.++
T Consensus 223 Hsg~~p~~g~nAi~~~~~~i~~l~~~~~-~---~---------~~~t~~~~~i~-gG~~~nvIP~~~~~~~diR~~~~~~ 288 (410)
T PRK06133 223 HAGAAPELGRNALYELAHQLLQLRDLGD-P---A---------KGTTLNWTVAK-AGTNRNVIPASASAQADVRYLDPAE 288 (410)
T ss_pred ccCCCcccCcCHHHHHHHHHHHHHhccC-C---C---------CCeEEEeeEEE-CCCCCceeCCccEEEEEEEECCHHH
Confidence 985 799999999999999999877521 1 1 13578999999 9999999999999999999999888
Q ss_pred hHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCC-HHHHHHHHHHHHHhCCC-Cc
Q 022886 159 VTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDS-RGFHVLCKATEEVVGHV-NP 236 (290)
Q Consensus 159 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~-~~~~~l~~a~~~~~g~~-~~ 236 (290)
.+++.+.+++.+++.. ..+.++++++...+|++..++++ ++++++++++++. |.+ .+
T Consensus 289 ~~~v~~~i~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ 347 (410)
T PRK06133 289 FDRLEADLQEKVKNKL--------------------VPDTEVTLRFERGRPPLEANAASRALAEHAQGIYGEL-GRRLEP 347 (410)
T ss_pred HHHHHHHHHHHHhccC--------------------CCCeEEEEEeccccCCcccCcchHHHHHHHHHHHHHc-CCCccc
Confidence 8888888888777511 11455666666678888765544 6888888887764 532 23
Q ss_pred --cccccCcchHHHHhhcCCcEEEE--cCCCC-ccc---------cchHHHHHHHHHHHH
Q 022886 237 --YSITGTLPLIRELQDEGFDVQTA--GYGMP-PLQ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 237 --~~~~gg~d~~~~~~~~g~~~v~~--Gpg~~-~~~---------~~~~~~iy~~~~~~~ 282 (290)
..+.|++| +++++..|+|++.+ ||++. .|+ +.+.+++|..++.+.
T Consensus 348 ~~~~~~g~tD-a~~~~~~gip~v~~g~G~~~~~aH~~nE~i~i~~~~~~~~~~~~~~~~~ 406 (410)
T PRK06133 348 IDMGTGGGTD-AAFAAGSGKAAVLEGFGLVGFGAHSNDEYIELNSIVPRLYLLTRMIMEL 406 (410)
T ss_pred cccCCCCCch-HHHHHhcCCCceEecccCCCCCCCCCCcEEEcccHHHHHHHHHHHHHHh
Confidence 45678888 56677789999984 55322 444 556678888877654
No 27
>PRK09104 hypothetical protein; Validated
Probab=99.97 E-value=1.9e-28 Score=230.92 Aligned_cols=256 Identities=18% Similarity=0.178 Sum_probs=187.1
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCC-----CceeeeceeEEEEEEEEe
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~v~v~G 76 (290)
+.|++.+..++++|.|+|++|||+|+ .|++.++.+.. +.+++|++|++|++.. .++++++|..+++|+++|
T Consensus 141 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~~iv~E~~~~~~~~~~i~~~~kG~~~~~l~v~g 216 (464)
T PRK09104 141 RAWKAVTGSLPVRVTILFEGEEESGS---PSLVPFLEANA-EELKADVALVCDTGMWDRETPAITTSLRGLVGEEVTITA 216 (464)
T ss_pred HHHHHhcCCCCCcEEEEEECccccCC---ccHHHHHHhhH-HhcCCCEEEEeCCCCCCCCCeEEEeecCCeEEEEEEEEe
Confidence 56677666788999999999999998 78888876532 2346799999997642 477899999999999999
Q ss_pred --cCCCCCC-CCCCCCHHHHHHHHHHHHHhhhcCC-CCC-------CCc-------c---cccCc---------------
Q 022886 77 --KLFHSGL-PHKAINPLELAMEALKVIQTRFYKD-FPP-------HPK-------E---QVYGF--------------- 120 (290)
Q Consensus 77 --~~~Hs~~-p~~g~NAi~~~~~~i~~l~~~~~~~-~~~-------~~~-------~---~~~~~--------------- 120 (290)
+++|||. |+.|.||+..+++++.+|++...+- ++. ... . ....|
T Consensus 217 ~~~~~Hss~~~~~g~nai~~~~~~l~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (464)
T PRK09104 217 ADRDLHSGLFGGAAANPIRVLTRILAGLHDETGRVTLPGFYDGVEELPPEILAQWKALGFTAEAFLGPVGLSIPAGEKGR 296 (464)
T ss_pred CCCCccccccCCccCCHHHHHHHHHHhccCCCCCEeCCccccCCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccCcccH
Confidence 6899996 6899999999999999987531100 000 000 0 00000
Q ss_pred ------CCCCceeeeEEecCCC----ccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCccccc
Q 022886 121 ------ETPSTMKPTQWSYPGG----GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYV 190 (290)
Q Consensus 121 ------~~~~~i~~~~i~~gg~----~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 190 (290)
...++++++.|+ +|. ..|+||++|++++|+|++|+++.+++.+.|++++.+...
T Consensus 297 ~~~~~~~~~~t~~i~~i~-gg~~~~~~~nvvP~~~~~~~diR~~p~~~~~~v~~~i~~~l~~~~~--------------- 360 (464)
T PRK09104 297 SVLEQIWSRPTCEINGIW-GGYTGEGFKTVIPAEASAKVSFRLVGGQDPAKIREAFRAYVRARLP--------------- 360 (464)
T ss_pred HHHHHHhhCCeEEEeccc-cCCCCCCCccEecCceEEEEEEEeCCCCCHHHHHHHHHHHHHHhCC---------------
Confidence 012578888898 774 479999999999999999999999999999888875311
Q ss_pred cCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCCCcc-ccccCcc-hHHHHhhcCCcEEEEcCCCC---c
Q 022886 191 LPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPY-SITGTLP-LIRELQDEGFDVQTAGYGMP---P 265 (290)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~~~~-~~~gg~d-~~~~~~~~g~~~v~~Gpg~~---~ 265 (290)
.+..+++......|++.++.++++++.+.+++++++|.++.. .++|+++ .+++.+..|+|++.||||.. .
T Consensus 361 -----~~~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gip~v~~g~G~~~~~a 435 (464)
T PRK09104 361 -----ADCSVEFHDHGGSPAIALPYDSPALAAAKAALSDEWGKPAVLIGSGGSIPIVGDFKRILGMDSLLVGFGLDDDRI 435 (464)
T ss_pred -----CCeEEEEEecCCCCceECCCCCHHHHHHHHHHHHHhCCCceecCCCCcHHHHHHHHHHhCCCEEEecCCCCCCCC
Confidence 123344443446788999999999999999999998865433 3444432 34543447999999999843 4
Q ss_pred cc---------cchHHHHHHHHHHHH
Q 022886 266 LQ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 266 ~~---------~~~~~~iy~~~~~~~ 282 (290)
|. +.+.+++|.+++...
T Consensus 436 H~~nE~i~i~~l~~~~~~~~~ll~~~ 461 (464)
T PRK09104 436 HSPNEKYDLESFHKGIRSWARILAAL 461 (464)
T ss_pred cCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 54 667788888877654
No 28
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.97 E-value=4.8e-29 Score=227.80 Aligned_cols=233 Identities=15% Similarity=0.211 Sum_probs=180.4
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCC--CCceeeeceeEEEEEEEEecCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~--~~i~~~~~g~~~~~v~v~G~~~ 79 (290)
++|++.+ .++++|.|+|++|||.|+ .|++.+.+.+ +.+|+.++.+++. +.++.+++|..+++++++|+++
T Consensus 113 ~~l~~~~-~~~~~v~~~~~~~EE~g~---~G~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~g~~~~~i~~~G~~~ 184 (361)
T TIGR01883 113 DVLSTEE-TPHGTIEFIFTVKEELGL---IGMRLFDESK----ITAAYGYCLDAPGEVGNIQLAAPTQVKVDATIAGKDA 184 (361)
T ss_pred HHHHhcC-CCCCCEEEEEEcccccCc---hhHhHhChhh----cCcceeEEEeCCCCcceEEecCCceEEEEEEEEeeec
Confidence 4566655 578899999999999987 7999887643 3457788888653 5688899999999999999999
Q ss_pred CCC-CCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCC
Q 022886 80 HSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (290)
Q Consensus 80 Hs~-~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~ 158 (290)
|++ .|+.|+||+..+++++.+|+.. ..++ ..+++++.++ +|...|+||++|++.+++|..|..+
T Consensus 185 Ha~~~p~~g~nAi~~~~~~i~~l~~~---~~~~-----------~~~~~i~~i~-gG~~~nvVP~~~~~~~diR~~~~~~ 249 (361)
T TIGR01883 185 HAGLVPEDGISAISVARMAIHAMRLG---RIDE-----------ETTANIGSFS-GGVNTNIVQDEQLIVAEARSLSFRK 249 (361)
T ss_pred CCCCCcccCcCHHHHHHHHHHhcccc---CCCC-----------ccccccceee-cCCccCccCCceEEEEEEecCCHHH
Confidence 985 7999999999999999888542 1111 2567889999 9999999999999999999998777
Q ss_pred hHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCC-Ccc
Q 022886 159 VTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPY 237 (290)
Q Consensus 159 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~-~~~ 237 (290)
.+++.+++++.+++.... ++..+++.+...+|++.++.|+++++.+++++++ .|.+ ...
T Consensus 250 ~~~~~~~i~~~i~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~lv~~l~~a~~~-~g~~~~~~ 309 (361)
T TIGR01883 250 AEAQVQTMRERFEQAAEK-------------------YGATLEEETRLIYEGFKIHPQHPLMNIFKKAAKK-IGLKTSEI 309 (361)
T ss_pred HHHHHHHHHHHHHHHHHH-------------------cCCEEEEEEEeccccccCCCCCHHHHHHHHHHHH-cCCCcEEE
Confidence 777777777777765432 1345566655668888888899999999999988 4754 344
Q ss_pred ccccCcchHHHHhhcCCcEEEEcCCCC-ccc---------cchHHHHHHHH
Q 022886 238 SITGTLPLIRELQDEGFDVQTAGYGMP-PLQ---------FTSFHSVYKTL 278 (290)
Q Consensus 238 ~~~gg~d~~~~~~~~g~~~v~~Gpg~~-~~~---------~~~~~~iy~~~ 278 (290)
.+.|++| ++++...|+|++.||||.. .|. +...+++|.++
T Consensus 310 ~~~g~tD-~~~~~~~giP~v~~G~g~~~~Hs~~E~v~i~~~~~~~~~~~~~ 359 (361)
T TIGR01883 310 FSGGGSD-ANVLNEKGVPTVNLSAGYVHAHTEKETISIEQLVKLAELVIAL 359 (361)
T ss_pred ecCcccH-HHHHhhCCCceEEECCCcccCcCcceeEEHHHHHHHHHHHHHH
Confidence 5677887 5657778999999999973 444 44455555554
No 29
>PRK07906 hypothetical protein; Provisional
Probab=99.97 E-value=7.1e-29 Score=231.52 Aligned_cols=247 Identities=17% Similarity=0.150 Sum_probs=177.8
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCC-----------CceeeeceeEEE
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----------QPCIGTGGMIPW 70 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~-----------~i~~~~~g~~~~ 70 (290)
++|++.+..++++|.|+|++|||+++. .|+++++++.. +.++...+++.|++.. .++.+++|..++
T Consensus 118 ~~l~~~~~~~~~~i~~~~~~dEE~g~~--~g~~~l~~~~~-~~~~~~~~ii~e~~~~~~~~~~~~~~~~i~~~~kG~~~~ 194 (426)
T PRK07906 118 RHLARTGRRPPRDLVFAFVADEEAGGT--YGAHWLVDNHP-ELFEGVTEAISEVGGFSLTVPGRDRLYLIETAEKGLAWM 194 (426)
T ss_pred HHHHHcCCCCCccEEEEEecCcccchh--hhHHHHHHHHH-HhccchheEEECCCceeeccCCCccEEEEEeccceEEEE
Confidence 567778888999999999999999762 59999987642 1122223456676532 267899999999
Q ss_pred EEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHhhhcCC------------CCC---CC-ccc--------------ccCc
Q 022886 71 KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD------------FPP---HP-KEQ--------------VYGF 120 (290)
Q Consensus 71 ~v~v~G~~~Hs~~p~~g~NAi~~~~~~i~~l~~~~~~~------------~~~---~~-~~~--------------~~~~ 120 (290)
+|+++|+++|++.|+. .||+..++++|.+|++...+. +.. .+ ... ....
T Consensus 195 ~v~v~G~~~Hss~p~~-~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 273 (426)
T PRK07906 195 RLTARGRAGHGSMVND-DNAVTRLAEAVARIGRHRWPLVLTPTVRAFLDGVAELTGLEFDPDDPDALLAKLGPAARMVGA 273 (426)
T ss_pred EEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHhhhhcCcccCcccHHHHHHHHhhcCcchhh
Confidence 9999999999999874 999999999999987532110 000 00 000 0000
Q ss_pred CCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeE
Q 022886 121 ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSL 200 (290)
Q Consensus 121 ~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
...++++++.|+ ||...|+||++|++.+|+|++|+++ +++ .+.+++... ..+
T Consensus 274 ~~~~t~~~~~i~-gG~~~NviP~~~~~~~d~R~~p~~~-~~i----~~~i~~~~~----------------------~~v 325 (426)
T PRK07906 274 TLRNTANPTMLK-AGYKVNVIPGTAEAVVDGRFLPGRE-EEF----LATVDELLG----------------------PDV 325 (426)
T ss_pred hhcccccceeEe-ccCccccCCCceEEEEEEeECCCCc-HHH----HHHHHHHhC----------------------CCe
Confidence 013588999999 9999999999999999999999875 444 444444321 124
Q ss_pred EEEEecCCCccccCCCCHHHHHHHHHHHHHhC--CCCccccccCcchHHHHhhcCCcEEEEcCCC---------Cccc--
Q 022886 201 TLTFDEATNGVACNLDSRGFHVLCKATEEVVG--HVNPYSITGTLPLIRELQDEGFDVQTAGYGM---------PPLQ-- 267 (290)
Q Consensus 201 ~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g--~~~~~~~~gg~d~~~~~~~~g~~~v~~Gpg~---------~~~~-- 267 (290)
++++....|++.++.|+++++.+++++++.++ .+.++...|||| +++|...|+|++.|||+. ..|+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~l~~a~~~~~~~~~~~~~~~~ggtD-a~~~~~~g~p~~~~gp~~~~~~~~~~~~~H~~~ 404 (426)
T PRK07906 326 EREWVHRDPALETPFDGPLVDAMNAALLAEDPGARVVPYMLSGGTD-AKAFSRLGIRCYGFAPLRLPPDLDFAALFHGVD 404 (426)
T ss_pred EEEEecCCCCCCCCCCcHHHHHHHHHHHHHCCCCeEeeeeecccCc-HHHHHhcCCceEEEeccccCccccccccCcCCC
Confidence 55555668888888999999999999999863 234556678888 677888899999999952 3454
Q ss_pred -------cchHHHHHHHHHHH
Q 022886 268 -------FTSFHSVYKTLIQK 281 (290)
Q Consensus 268 -------~~~~~~iy~~~~~~ 281 (290)
+.+.+++|.+++.+
T Consensus 405 E~v~~~~l~~~~~~~~~~l~~ 425 (426)
T PRK07906 405 ERVPVDALRFGVRVLDRFLRT 425 (426)
T ss_pred CceeHHHHHHHHHHHHHHHHh
Confidence 55667777776654
No 30
>PRK07473 carboxypeptidase; Provisional
Probab=99.97 E-value=1.5e-28 Score=225.58 Aligned_cols=234 Identities=12% Similarity=0.068 Sum_probs=173.9
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCC--CCceeeeceeEEEEEEEEecCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~--~~i~~~~~g~~~~~v~v~G~~~ 79 (290)
++|++.+..++.+|.|+|++|||+|+ .|++.+++++.. ++|++|++||+. +.++.+++|..+++|+++|+++
T Consensus 125 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~g~~~~~~~~~~---~~d~~iv~ep~~~~~~v~~~~~G~~~~~v~~~G~~a 198 (376)
T PRK07473 125 RQLARAGITTPLPITVLFTPDEEVGT---PSTRDLIEAEAA---RNKYVLVPEPGRPDNGVVTGRYAIARFNLEATGRPS 198 (376)
T ss_pred HHHHHcCCCCCCCEEEEEeCCcccCC---ccHHHHHHHhhc---cCCEEEEeCCCCCCCCEEEECeeeEEEEEEEEeEcC
Confidence 56777777778899999999999998 899999986532 468999999985 4789999999999999999999
Q ss_pred CCC-CCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCC
Q 022886 80 HSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (290)
Q Consensus 80 Hs~-~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~ 158 (290)
|++ .|+.|+||+..+++++.+|++... . ..+++++.|+ ||...|+||++|++++++|....
T Consensus 199 Hag~~p~~g~nAi~~~~~~i~~l~~~~~---~------------~~~~~vg~i~-gg~~~n~VP~~~~~~~d~r~~~~-- 260 (376)
T PRK07473 199 HAGATLSEGRSAIREMARQILAIDAMTT---E------------DCTFSVGIVH-GGQWVNCVATTCTGEALSMAKRQ-- 260 (376)
T ss_pred CCCCCcccCcCHHHHHHHHHHHHHHhcC---C------------CceEeEeeEE-cCCCCcCCCCceEEEEEEEeCCH--
Confidence 986 799999999999999999987521 1 2568999999 99999999999999999998752
Q ss_pred hHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCC-HHHHHHHHHHHHHhCCC-Cc
Q 022886 159 VTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDS-RGFHVLCKATEEVVGHV-NP 236 (290)
Q Consensus 159 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~-~~~~~l~~a~~~~~g~~-~~ 236 (290)
+++.+.+++..+. .+. ..+.++++......|++..+.++ ++++.++++.+. .|.+ ..
T Consensus 261 -~~~~~~~~~i~~~-~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~g~~~~~ 319 (376)
T PRK07473 261 -ADLDRGVARMLAL-SGT------------------EDDVTFTVTRGVTRPVWEPDAGTMALYEKARAIAGQ-LGLSLPH 319 (376)
T ss_pred -hHHHHHHHHHHHh-hCc------------------CCCeEEEEEccccCCCCCCChhHHHHHHHHHHHHHH-cCCCCcc
Confidence 3332222222222 111 01234444433356777655544 687887777655 4653 45
Q ss_pred cccccCcchHHHHhhcCCcEEE-EcCCCC-ccc---------cchHHHHHHHHHHH
Q 022886 237 YSITGTLPLIRELQDEGFDVQT-AGYGMP-PLQ---------FTSFHSVYKTLIQK 281 (290)
Q Consensus 237 ~~~~gg~d~~~~~~~~g~~~v~-~Gpg~~-~~~---------~~~~~~iy~~~~~~ 281 (290)
..++|++| +++|...|+|++. ||||.. .|+ +.+.+++|..++.+
T Consensus 320 ~~~~g~tD-a~~~~~~giP~v~g~Gpg~~~~H~~dE~v~i~~l~~~~~vl~~~l~~ 374 (376)
T PRK07473 320 GSAGGGSD-GNFTGAMGIPTLDGLGVRGADYHTLNEHIEVDSLAERGRLMAGLLAT 374 (376)
T ss_pred ccCccccH-hhhHHhcCCCEEEeccCCCCCCCCCCceEecccHHHHHHHHHHHHHh
Confidence 55678888 7778778999996 999653 444 55667777777653
No 31
>PRK06446 hypothetical protein; Provisional
Probab=99.97 E-value=9.9e-29 Score=231.09 Aligned_cols=252 Identities=17% Similarity=0.186 Sum_probs=183.3
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCC------CceeeeceeEEEEEEEE
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK------QPCIGTGGMIPWKLHVT 75 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~------~i~~~~~g~~~~~v~v~ 75 (290)
+.|++.+ .++.+|.|+|++|||.|+ .|+++++++.. +.+++|++| +||+.. .++++++|..|++++++
T Consensus 116 ~~l~~~~-~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~vi-~E~~~~~~~~~~~i~~~~kG~~~~~l~v~ 189 (436)
T PRK06446 116 KHLIDKH-KLNVNVKFLYEGEEEIGS---PNLEDFIEKNK-NKLKADSVI-MEGAGLDPKGRPQIVLGVKGLLYVELVLR 189 (436)
T ss_pred HHHHHcC-CCCCCEEEEEEcccccCC---HhHHHHHHHHH-HHhCCCEEE-ECCCCccCCCCeEEEEecCeEEEEEEEEE
Confidence 3454444 578899999999999998 79999987631 234567876 588754 67899999999999999
Q ss_pred e--cCCCCCCCCCCCCHHHHHHHHHHHHHhhhc--------CCCCCCCc----------------cccc-----------
Q 022886 76 G--KLFHSGLPHKAINPLELAMEALKVIQTRFY--------KDFPPHPK----------------EQVY----------- 118 (290)
Q Consensus 76 G--~~~Hs~~p~~g~NAi~~~~~~i~~l~~~~~--------~~~~~~~~----------------~~~~----------- 118 (290)
| +++|||.|+.|.||+..+++++++|.+... +.+.+... ...+
T Consensus 190 G~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 269 (436)
T PRK06446 190 TGTKDLHSSNAPIVRNPAWDLVKLLSTLVDGEGRVLIPGFYDDVRELTEEERELLKKYDIDVEELRKALGFKELKYSDRE 269 (436)
T ss_pred eCCCCCCCCCCccCCCHHHHHHHHHHhhCCCCCCEEccchhcCCCCCCHHHHHHHHhCCCCHHHHHHHhCCccccCCCcc
Confidence 9 999999999999999999999999975310 00000000 0000
Q ss_pred ----CcCCCCceeeeEEecCC----CccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCccccc
Q 022886 119 ----GFETPSTMKPTQWSYPG----GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYV 190 (290)
Q Consensus 119 ----~~~~~~~i~~~~i~~gg----~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 190 (290)
......++|++.|+ +| ...|+||++|++++|+|++|+++.+++.+.+++++.+..
T Consensus 270 ~~~~~~~~~~t~nv~~i~-~g~~~~~~~nvvP~~a~~~~d~R~~p~~~~~~v~~~l~~~~~~~~---------------- 332 (436)
T PRK06446 270 KIAEALLTEPTCNIDGFY-SGYTGKGSKTIVPSRAFAKLDFRLVPNQDPYKIFELLKKHLQKVG---------------- 332 (436)
T ss_pred cHHHHHHhCCcEEEeeee-ccccCCCCCcEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHHcC----------------
Confidence 01124688998888 55 467999999999999999999999999999999987631
Q ss_pred cCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCCCc-cccc-cCcchHHHHhhcCCcEEE--EcCCC---
Q 022886 191 LPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNP-YSIT-GTLPLIRELQDEGFDVQT--AGYGM--- 263 (290)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~~~-~~~~-gg~d~~~~~~~~g~~~v~--~Gpg~--- 263 (290)
..+++++....+|+.++.++++++++++++++++|..+. .... |++|++.+.+..|+|++. +|||.
T Consensus 333 -------~~~~~~~~~~~~p~~~~~~~~~v~~l~~a~~~~~g~~~~~~~~~~g~~d~~~~~~~~gip~v~~~~g~g~~~~ 405 (436)
T PRK06446 333 -------FNGEIIVHGFEYPVRTSVNSKVVKAMIESAKRVYGTEPVVIPNSAGTQPMGLFVYKLGIRDIVSAIGVGGYYS 405 (436)
T ss_pred -------CCeEEEEcCCcceeecCCCCHHHHHHHHHHHHHhCCCCceecCCCCcchHHHHHHHhCCCcceeecccCCCCc
Confidence 134555555678888889999999999999999886433 3333 444544433447999764 66543
Q ss_pred Cccc---------cchHHHHHHHHHHHHH
Q 022886 264 PPLQ---------FTSFHSVYKTLIQKTW 283 (290)
Q Consensus 264 ~~~~---------~~~~~~iy~~~~~~~~ 283 (290)
..|. +.+.+++|..++...+
T Consensus 406 ~~H~~dE~i~i~~l~~~~~~~~~~~~~~~ 434 (436)
T PRK06446 406 NAHAPNENIRIDDYYKAIKHTEEFLKLYS 434 (436)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence 2444 6677888888876544
No 32
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=99.96 E-value=2.9e-28 Score=220.65 Aligned_cols=220 Identities=17% Similarity=0.158 Sum_probs=172.2
Q ss_pred ceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCC-CceeeeceeEEEEEEEEecCCCCCCCCCCCCH
Q 022886 12 KSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFHSGLPHKAINP 90 (290)
Q Consensus 12 ~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~-~i~~~~~g~~~~~v~v~G~~~Hs~~p~~g~NA 90 (290)
+.+|.|++++|||+|+ .|++++++... .++++++||+.. .++++++|..+++++++|+++|++.|+ ||
T Consensus 101 ~~~i~~~~~~dEE~g~---~G~~~~~~~~~-----~~~~ii~ept~~~~i~~~~kG~~~~~v~~~G~~~Hss~~~---~a 169 (336)
T TIGR01902 101 GIKVIVSGLVDEESSS---KGAREVIDKNY-----PFYVIVGEPSGAEGITLGYKGSLQLKIMCEGTPFHSSSAG---NA 169 (336)
T ss_pred CCcEEEEEEeCcccCC---ccHHHHHhhcC-----CCEEEEecCCCCcceeeeeeeEEEEEEEEEecCcccCCCh---hH
Confidence 4689999999999988 89999998642 358999999874 688999999999999999999999875 59
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHHHHHHH
Q 022886 91 LELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 170 (290)
Q Consensus 91 i~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l 170 (290)
+..+.++++.|.+.+.+... + +..+++++.++ +|...|+||++|++.+|+|++|+++.+++.+.+++
T Consensus 170 i~~~~~~~~~l~~~~~~~~~---------~-~~~~~~~~~i~-gg~~~nvIP~~a~~~idiR~~p~~~~~~~~~~i~~-- 236 (336)
T TIGR01902 170 AELLIDYSKKIIEVYKQPEN---------Y-DKPSIVPTIIR-FGESYNDTPAKLELHFDLRYPPNNKPEEAIKEITD-- 236 (336)
T ss_pred HHHHHHHHHHHHHHhccccC---------C-CCCcceeEEEE-ccCCCcCCCceEEEEEEEeeCCCCCHHHHHHHHHh--
Confidence 99999999998743222111 1 12467888898 99999999999999999999999999888766654
Q ss_pred HHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCCCccccccCcchHHHHh
Q 022886 171 DDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIRELQ 250 (290)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~~~~~~~gg~d~~~~~~ 250 (290)
. ..+++++....||+.+++|+++++.+++++++....+....+.|++| +++|.
T Consensus 237 -~-------------------------~~~~~~~~~~~~p~~~~~~~~lv~~~~~a~~~~~~~~~~~~~~g~tD-~~~~~ 289 (336)
T TIGR01902 237 -K-------------------------FPICLEIVDETPPYKVSRNNPLVRAFVRAIRKQGMKPRLKKKTGTSD-MNILA 289 (336)
T ss_pred -c-------------------------cCceEEEEeccCceecCCCCHHHHHHHHHHHHcCCCeEEeeccccCc-cceec
Confidence 1 01234444567888888999999999999998743444445567788 46676
Q ss_pred hc-CCcEEEEcCCCC--ccc---------cchHHHHHHHHHHHH
Q 022886 251 DE-GFDVQTAGYGMP--PLQ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 251 ~~-g~~~v~~Gpg~~--~~~---------~~~~~~iy~~~~~~~ 282 (290)
.. |+|++.||||.. +|+ +.+.+++|..++.+.
T Consensus 290 ~~~g~p~v~~Gpg~~~~aH~~nE~v~i~~l~~~~~~~~~~l~~l 333 (336)
T TIGR01902 290 PIWTVPMVAYGPGDSTLDHTPQEKISLAEYLIGIKTLMLAIEEL 333 (336)
T ss_pred cccCCCeEEECCCCcccCCCCcceeEHHHHHHHHHHHHHHHHHH
Confidence 64 999999999965 454 566778888777654
No 33
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.96 E-value=2.6e-28 Score=226.87 Aligned_cols=242 Identities=16% Similarity=0.122 Sum_probs=181.0
Q ss_pred hhcccccCCCceeEEEEEEecccCC-----CCCcccHHHHHHccc--------------------cccCCCCcEEEe--c
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDALVKDGL--------------------LNKLKGGPLYWI--D 54 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g-----~~~~~G~~~l~~~~~--------------------~~~~~~d~~i~~--e 54 (290)
++|++.+..++++|.|+|++|||.| + .|++.+++... ..++++|+++++ |
T Consensus 105 ~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~e 181 (413)
T PRK09290 105 RTLNERGIRPRRPIEVVAFTNEEGSRFGPAM---LGSRVFTGALTPEDALALRDADGVSFAEALAAIGYDGDEAVGAARA 181 (413)
T ss_pred HHHHHcCCCCCCCeEEEEEcCCccccccCcc---ccHHHHHcccCHHHHHhccCCCCCCHHHHHHHcCCChhhccccccC
Confidence 5677888888999999999999984 4 68888864311 124567777765 5
Q ss_pred CCC---------------------CCceeeeceeEEEEEEEEecCCCCC-CC-CCCCCHHHHHHHHHHHHHhhhcCCCCC
Q 022886 55 TAD---------------------KQPCIGTGGMIPWKLHVTGKLFHSG-LP-HKAINPLELAMEALKVIQTRFYKDFPP 111 (290)
Q Consensus 55 ~~~---------------------~~i~~~~~g~~~~~v~v~G~~~Hs~-~p-~~g~NAi~~~~~~i~~l~~~~~~~~~~ 111 (290)
|+. ..++.+++|..+++|+++|+++|++ .| +.|.|||..+++++++|+....+. .
T Consensus 182 pt~~~~~~~~~~~~~~~~e~~~~~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~~-~- 259 (413)
T PRK09290 182 RRDIKAFVELHIEQGPVLEAEGLPIGVVTGIVGQRRYRVTFTGEANHAGTTPMALRRDALLAAAEIILAVERIAAAH-G- 259 (413)
T ss_pred CCCccEEEEEEeccCHHHHHCCCcEEEEeeeeccEEEEEEEEEECCCCCCCCchhccCHHHHHHHHHHHHHHHHHhc-C-
Confidence 542 2477899999999999999999988 68 589999999999999998753221 1
Q ss_pred CCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCcccccc
Q 022886 112 HPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVL 191 (290)
Q Consensus 112 ~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 191 (290)
.+.+++++.++.++...|+||++|++++|+|+.|+++.+++.+++++.+++....
T Consensus 260 ----------~~~~~~~g~i~~g~~~~NvIP~~a~~~~diR~~p~e~~e~v~~~i~~~~~~~~~~--------------- 314 (413)
T PRK09290 260 ----------PDLVATVGRLEVKPNSVNVIPGEVTFTLDIRHPDDAVLDALVAELRAAAEAIAAR--------------- 314 (413)
T ss_pred ----------CCeEEEEEEEEEcCCCCeEECCEEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 1356789999833478999999999999999999999999999988888875432
Q ss_pred CCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCC-CccccccCcchHHHHhhcCCcE-EEEcCCCC--ccc
Q 022886 192 PDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSITGTLPLIRELQDEGFDV-QTAGYGMP--PLQ 267 (290)
Q Consensus 192 ~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~-~~~~~~gg~d~~~~~~~~g~~~-v~~Gpg~~--~~~ 267 (290)
++.++++.....+|++. .|+++++.+++++++. |.+ ....+.|++|. ++|. .++|+ +.|||+.. .|+
T Consensus 315 ----~~~~~e~~~~~~~~~~~--~d~~lv~~l~~a~~~~-g~~~~~~~~~g~tDa-~~~~-~~iP~~~~~gp~~~~~~H~ 385 (413)
T PRK09290 315 ----RGVEVEIELISRRPPVP--FDPGLVAALEEAAERL-GLSYRRLPSGAGHDA-QILA-AVVPTAMIFVPSVGGISHN 385 (413)
T ss_pred ----cCCeEEEEEEecCCCcc--CCHHHHHHHHHHHHHc-CCCccccCCccchHH-HHHh-ccCCEEEEEeccCCCCCCC
Confidence 13455665555677755 6789999999999775 743 34456778885 5564 47997 66888754 344
Q ss_pred ---------cchHHHHHHHHHHHH
Q 022886 268 ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 268 ---------~~~~~~iy~~~~~~~ 282 (290)
+.+.+++|..++.+.
T Consensus 386 ~dE~v~i~~l~~~~~v~~~~l~~l 409 (413)
T PRK09290 386 PAEFTSPEDCAAGANVLLHALLEL 409 (413)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHH
Confidence 556677777766543
No 34
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.96 E-value=2.7e-28 Score=226.73 Aligned_cols=241 Identities=17% Similarity=0.133 Sum_probs=182.3
Q ss_pred hhcccccCCCceeEEEEEEecccCC----CCCcccHHHHHHcccc---------------------ccCCCCcEEEecCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENS----AITGVGVDALVKDGLL---------------------NKLKGGPLYWIDTA 56 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g----~~~~~G~~~l~~~~~~---------------------~~~~~d~~i~~e~~ 56 (290)
++|++.+..++++|.|++++|||++ +. .|+++++++... .++.+|+++++||+
T Consensus 106 ~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~--~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~ep~ 183 (412)
T PRK12892 106 RALNEHGIATRHPLDVVAWCDEEGSRFTPGF--LGSRAYAGRLDPADALAARCRSDGVPLRDALAAAGLAGRPRPAADRA 183 (412)
T ss_pred HHHHHcCCCCCCCeEEEEecCcccccccCcc--ccHHHHHcCCCHHHHHhCccCCCCcCHHHHHHHcCCChhhccccccc
Confidence 5678888889999999999999984 21 699999853100 12446777777765
Q ss_pred C---------------------CCceeeeceeEEEEEEEEecCCCCCC-CC-CCCCHHHHHHHHHHHHHhhhcCCCCCCC
Q 022886 57 D---------------------KQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHP 113 (290)
Q Consensus 57 ~---------------------~~i~~~~~g~~~~~v~v~G~~~Hs~~-p~-~g~NAi~~~~~~i~~l~~~~~~~~~~~~ 113 (290)
. ..++.+++|..+++|+++|+++|++. |+ .|.||+..+++++++|++...+..
T Consensus 184 ~~~~~~e~~~~~g~~~e~~~~~~~i~~~~kG~~~~~i~v~G~~aHa~~~p~~~g~nAi~~a~~~i~~l~~~~~~~~---- 259 (412)
T PRK12892 184 RPKGYLEAHIEQGPVLEQAGLPVGVVTGIVGIWQYRITVTGEAGHAGTTPMALRRDAGLAAAEMIAAIDEHFPRVC---- 259 (412)
T ss_pred CccEEEEEEeccCHhHhhCCCcEEEEEEeccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcC----
Confidence 2 23678999999999999999999875 65 678999999999999987532221
Q ss_pred cccccCcCCCCceeeeEEecCC-CccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCccccccC
Q 022886 114 KEQVYGFETPSTMKPTQWSYPG-GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLP 192 (290)
Q Consensus 114 ~~~~~~~~~~~~i~~~~i~~gg-~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 192 (290)
.+.+++++.|+ +| ...|+||++|++++|+|++|+++.+++.+++++.+++....
T Consensus 260 --------~~~~~~vg~i~-gg~~~~NvIP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~---------------- 314 (412)
T PRK12892 260 --------GPAVVTVGRVA-LDPGSPSIIPGRVEFSFDARHPSPPVLQRLVALLEALCREIARR---------------- 314 (412)
T ss_pred --------CCcEEEEEEEE-ecCCCCeEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 13678999999 65 79999999999999999999988889999888888875432
Q ss_pred CCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCC-CccccccCcchHHHHhhcCCcE-EEEcCCCC--ccc-
Q 022886 193 DENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSITGTLPLIRELQDEGFDV-QTAGYGMP--PLQ- 267 (290)
Q Consensus 193 ~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~-~~~~~~gg~d~~~~~~~~g~~~-v~~Gpg~~--~~~- 267 (290)
+++++++.....+|++. .|+++++.+++++++ .|.+ .+..+.|++| +++|... +|+ +.|||+.. .|+
T Consensus 315 ---~~~~~e~~~~~~~~~~~--~d~~lv~~~~~a~~~-~g~~~~~~~~~g~tD-a~~~~~~-ip~~~~~gp~~~~~~H~~ 386 (412)
T PRK12892 315 ---RGCRVSVDRIAEYAPAP--CDAALVDALRAAAEA-AGGPYLEMPSGAGHD-AQNMARI-APSAMLFVPSKGGISHNP 386 (412)
T ss_pred ---hCCeEEEEEEecCCCcC--CCHHHHHHHHHHHHH-cCCCccccCcchHHH-HHHHHhH-CCEEEEEeccCCCCCCCC
Confidence 13455665555677765 578999999999998 6754 3455678888 5657665 774 66999753 344
Q ss_pred --------cchHHHHHHHHHHH
Q 022886 268 --------FTSFHSVYKTLIQK 281 (290)
Q Consensus 268 --------~~~~~~iy~~~~~~ 281 (290)
+.+.+++|..++.+
T Consensus 387 ~E~v~i~~l~~~~~il~~~l~~ 408 (412)
T PRK12892 387 AEDTSPADLAQGARVLADTLRR 408 (412)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 55667777777654
No 35
>PLN02280 IAA-amino acid hydrolase
Probab=99.96 E-value=6.3e-28 Score=226.59 Aligned_cols=243 Identities=18% Similarity=0.232 Sum_probs=179.8
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCCC--ce------eeeceeEEEEEE
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQ--PC------IGTGGMIPWKLH 73 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~--i~------~~~~g~~~~~v~ 73 (290)
++|++.+.+++++|.|+|++|||+| .|+++|+++|.+++ .|+++..|++... .+ ...+|..+++|+
T Consensus 199 ~~L~~~~~~~~g~V~~if~pdEE~g----~Ga~~li~~g~~~~--~d~~~~~h~~~~~p~g~ig~~~~~~~~G~~~~~I~ 272 (478)
T PLN02280 199 KILKSREHLLKGTVVLLFQPAEEAG----NGAKRMIGDGALDD--VEAIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAV 272 (478)
T ss_pred HHHHhccccCCceEEEEeccccccc----chHHHHHHCCCCcC--CCEEEEEecCCCCCCceeEecccccccceeEEEEE
Confidence 4667777788999999999999986 59999999987764 4677776664321 12 234599999999
Q ss_pred EEecCCCCCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEE
Q 022886 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (290)
Q Consensus 74 v~G~~~Hs~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~ 153 (290)
++|+++|++.|+.|.||+..+++++..+++...+...+. .+.+++++.|+ ||...|+||++|++++|+|+
T Consensus 273 v~Gk~aHas~P~~G~NAI~~aa~li~~l~~l~~r~~~~~---------~~~tvnvg~I~-GG~~~NvIPd~~~l~~diR~ 342 (478)
T PLN02280 273 ISGKKGRAGSPHHSVDLILAASAAVISLQGIVSREANPL---------DSQVVSVTTMD-GGNNLDMIPDTVVLGGTFRA 342 (478)
T ss_pred EECcchhcCCcccCcCHHHHHHHHHHHHHHHHhcccCCC---------CCcEEEEEEEE-ccCCCCEeCCEEEEEEEEec
Confidence 999999999999999999999999999987643222221 24678999999 99999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEe----cCCCccccCCCCHHHHHHHHHHHH
Q 022886 154 TPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFD----EATNGVACNLDSRGFHVLCKATEE 229 (290)
Q Consensus 154 ~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~d~~~~~~l~~a~~~ 229 (290)
+|+.+.+++.++|++.+++..+. +++++++++. ..+|+.. +++++++.++++..+
T Consensus 343 ~~~e~~e~l~~~I~~~~~~~a~~-------------------~g~~~~v~~~~~~~~~~pp~~--n~~~l~~~~~~~a~~ 401 (478)
T PLN02280 343 FSNTSFYQLLKRIQEVIVEQAGV-------------------FRCSATVDFFEKQNTIYPPTV--NNDAMYEHVRKVAID 401 (478)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-------------------hCCeEEEEEeccccCCCCCcc--CCHHHHHHHHHHHHH
Confidence 99888888877777777664321 2445555542 2366644 678999999999888
Q ss_pred HhCCCC--c-cccccCcchHHHHhhcCCcEEEE--cC-----CC--Cccc---------cchHHHHHHHHHHHHH
Q 022886 230 VVGHVN--P-YSITGTLPLIRELQDEGFDVQTA--GY-----GM--PPLQ---------FTSFHSVYKTLIQKTW 283 (290)
Q Consensus 230 ~~g~~~--~-~~~~gg~d~~~~~~~~g~~~v~~--Gp-----g~--~~~~---------~~~~~~iy~~~~~~~~ 283 (290)
..|.+. . ....|++|++. |.+ .+|++.| |+ |. ..|. +...+++|..++.+.+
T Consensus 402 ~~G~~~~~~~~~~~g~tD~~~-~~~-~vP~i~~glG~~~~~~G~~~~~Htp~e~id~~~L~~~~~~~~~~~~~~l 474 (478)
T PLN02280 402 LLGPANFTVVPPMMGAEDFSF-YSQ-VVPAAFYYIGIRNETLGSTHTGHSPYFMIDEDVLPIGAAVHAAIAERYL 474 (478)
T ss_pred hcCccccccCCCCeeechHHH-HHh-hCCEEEEEEeecCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 777531 1 13467788655 554 4999877 43 32 2343 5567788888776643
No 36
>PRK09133 hypothetical protein; Provisional
Probab=99.96 E-value=3.7e-28 Score=229.41 Aligned_cols=248 Identities=19% Similarity=0.144 Sum_probs=181.5
Q ss_pred hhcccccCCCceeEEEEEEeccc-CCCCCcccHHHHHHccccccCCCCcEEEecCCC------C-----CceeeeceeEE
Q 022886 2 RKLGETKLKLKSTVIAVFIASEE-NSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD------K-----QPCIGTGGMIP 69 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE-~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~------~-----~i~~~~~g~~~ 69 (290)
++|++.+..++++|.|+|++||| +|+ .|+++++++.. ..+++|++|+ |++. + .++.+++|..+
T Consensus 154 ~~l~~~~~~~~~~i~~~~~~dEE~~g~---~G~~~l~~~~~-~~~~~~~~i~-e~~~~~~~~~gept~~~i~~g~kG~~~ 228 (472)
T PRK09133 154 IRLKREGFKPKRDIILALTGDEEGTPM---NGVAWLAENHR-DLIDAEFALN-EGGGGTLDEDGKPVLLTVQAGEKTYAD 228 (472)
T ss_pred HHHHhcCCCCCCCEEEEEECccccCcc---chHHHHHHHHh-hccCeEEEEE-CCCccccCCCCCceEEEeeeecceeEE
Confidence 56777787889999999999999 677 89999998643 2356788998 6653 2 34579999999
Q ss_pred EEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHhhhcCC-CCCC----------------------------Cc------
Q 022886 70 WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD-FPPH----------------------------PK------ 114 (290)
Q Consensus 70 ~~v~v~G~~~Hs~~p~~g~NAi~~~~~~i~~l~~~~~~~-~~~~----------------------------~~------ 114 (290)
++|+++|+++|||.|+ +.||+..++++|.+|++..... .... +.
T Consensus 229 ~~i~v~G~~~Hss~p~-~~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (472)
T PRK09133 229 FRLEVTNPGGHSSRPT-KDNAIYRLAAALSRLAAYRFPVMLNDVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALL 307 (472)
T ss_pred EEEEEecCCCCCCCCC-CCChHHHHHHHHHHHhhCCCCCccCCccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHHHH
Confidence 9999999999999997 5899999999999987642110 0000 00
Q ss_pred ccccCc--CCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCccccccC
Q 022886 115 EQVYGF--ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLP 192 (290)
Q Consensus 115 ~~~~~~--~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 192 (290)
.....+ ....+++++.|+ +|...|+||++|++.+|+|++|+++.+++.++|++.+++
T Consensus 308 ~~~~~~~~~~~~t~~~~~i~-gG~~~NvVP~~a~~~lDiR~~p~~~~e~v~~~I~~~i~~-------------------- 366 (472)
T PRK09133 308 SADPSYNAMLRTTCVATMLE-GGHAENALPQRATANVNCRIFPGDTIEAVRATLKQVVAD-------------------- 366 (472)
T ss_pred hcCcchhheeeeeEEeeEEe-cCCcCccCCCceEEEEEEEeCCchhHHHHHHHHHHHhcC--------------------
Confidence 000001 124688999999 999999999999999999999999888888887776643
Q ss_pred CCCcceeEEEEEec-CCCccccCCCCHHHHHHHHHHHHHh-CCC-CccccccCcchHHHHhhcCCcEEE----EcCCCC-
Q 022886 193 DENIRGSLTLTFDE-ATNGVACNLDSRGFHVLCKATEEVV-GHV-NPYSITGTLPLIRELQDEGFDVQT----AGYGMP- 264 (290)
Q Consensus 193 ~~~~~~~~~~~~~~-~~p~~~~~~d~~~~~~l~~a~~~~~-g~~-~~~~~~gg~d~~~~~~~~g~~~v~----~Gpg~~- 264 (290)
..++++... ..++..++.++++++.+++++++.+ |.+ .+..+.|++| ++++...|+|++. |||+..
T Consensus 367 -----~~v~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~ggtD-a~~~~~~gip~~~~~~i~gp~~~~ 440 (472)
T PRK09133 367 -----PAIKITRIGDPSPSPASPLRPDIMKAVEKLTAAMWPGVPVIPSMSTGATD-GRYLRAAGIPTYGVSGLFGDPDDT 440 (472)
T ss_pred -----CCEEEEEccCCCCCCCCCCCcHHHHHHHHHHHHHCCCCceeccccccccc-hHHHHhcCCCceeecCcccCcccc
Confidence 013343322 2344456678899999999999987 543 3456778888 6778778999984 676543
Q ss_pred -ccc---------cchHHHHHHHHHHHH
Q 022886 265 -PLQ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 265 -~~~---------~~~~~~iy~~~~~~~ 282 (290)
.|+ +.+.+++|..++.+.
T Consensus 441 ~aH~~dE~v~i~~l~~~~~~l~~~l~~l 468 (472)
T PRK09133 441 FAHGLNERIPVASFYEGRDFLYELVKDL 468 (472)
T ss_pred cCCCCCCceeHHHHHHHHHHHHHHHHHh
Confidence 444 566677777776543
No 37
>PRK07907 hypothetical protein; Provisional
Probab=99.96 E-value=2e-27 Score=223.16 Aligned_cols=251 Identities=14% Similarity=0.134 Sum_probs=185.4
Q ss_pred cCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCC-----CceeeeceeEEEEEEEE--ecCCC
Q 022886 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVT--GKLFH 80 (290)
Q Consensus 8 ~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~v~v~--G~~~H 80 (290)
+..++++|.|++++|||+|+ .|++++++... +.+++|++|++||+.. .+++++||..+++++++ |+++|
T Consensus 140 ~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~~iv~E~~~~~~~~p~i~~~~kG~~~~~l~v~~~G~~~H 215 (449)
T PRK07907 140 GGDLPVGVTVFVEGEEEMGS---PSLERLLAEHP-DLLAADVIVIADSGNWSVGVPALTTSLRGNADVVVTVRTLEHAVH 215 (449)
T ss_pred ccCCCCcEEEEEEcCcccCC---ccHHHHHHhch-HhhcCCEEEEecCCcCCCCCeEEEEecCCcEEEEEEEEECCCCCC
Confidence 34577899999999999998 79999998632 2356799999999764 36789999999999999 89999
Q ss_pred CCCC-CCCCCHHHHHHHHHHHHHhhhcC----CCCCCCccccc---------------------------CcCCCCceee
Q 022886 81 SGLP-HKAINPLELAMEALKVIQTRFYK----DFPPHPKEQVY---------------------------GFETPSTMKP 128 (290)
Q Consensus 81 s~~p-~~g~NAi~~~~~~i~~l~~~~~~----~~~~~~~~~~~---------------------------~~~~~~~i~~ 128 (290)
||.| ..+.||+..+++++.+|.+...+ .+......... ......++++
T Consensus 216 ss~~~~~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i 295 (449)
T PRK07907 216 SGQFGGAAPDALTALVRLLATLHDEDGNVAVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGTGSVADRLWAKPAITV 295 (449)
T ss_pred CccccccCCCHHHHHHHHHHhhCCCCCCEeCCCccCCCCcccccccHHHHHHHhhhhhcccccCCChHHHHhhhcCcEEE
Confidence 9974 67899999999999998763211 00000000000 0012457888
Q ss_pred eEEec--CCCccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEec
Q 022886 129 TQWSY--PGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE 206 (290)
Q Consensus 129 ~~i~~--gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (290)
+.|+. +|...|+||++|++++|+|++|+++.+++.+.|++++++... ++..+++++..
T Consensus 296 ~~i~~~~~g~~~nvIP~~a~~~~diR~~p~~~~e~v~~~l~~~l~~~~~--------------------~~~~~~~~~~~ 355 (449)
T PRK07907 296 IGIDAPPVAGASNALPPSARARLSLRVAPGQDAAEAQDALVAHLEAHAP--------------------WGAHVTVERGD 355 (449)
T ss_pred EeeecCCCCCCCCEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhcCC--------------------CCcEEEEEECC
Confidence 88882 246889999999999999999999999999999999876311 12445666656
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHhCCCCcc-ccccCcchHHHHhh--cCCcEEEEcCCCC---ccc---------cchH
Q 022886 207 ATNGVACNLDSRGFHVLCKATEEVVGHVNPY-SITGTLPLIRELQD--EGFDVQTAGYGMP---PLQ---------FTSF 271 (290)
Q Consensus 207 ~~p~~~~~~d~~~~~~l~~a~~~~~g~~~~~-~~~gg~d~~~~~~~--~g~~~v~~Gpg~~---~~~---------~~~~ 271 (290)
.++|+.++.++++++.+++++++++|.++.. .++|+.++...|.+ .++|++.||||+. .|+ +.+.
T Consensus 356 ~~~p~~~~~~~~~~~~l~~a~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~Gpg~~~~~aH~~nE~i~i~~l~~~ 435 (449)
T PRK07907 356 AGQPFAADASGPAYDAARAAMREAWGKDPVDMGMGGSIPFIAELQEAFPQAEILVTGVEDPKTRAHSPNESVHLGELERA 435 (449)
T ss_pred CcCceeCCCCCHHHHHHHHHHHHHhCCCceecCCCCcHHHHHHHHHhcCCCcEEEeccCCCCCCCcCCCCCcCHHHHHHH
Confidence 6888888899999999999999999865433 34444443333443 3689999999863 454 6677
Q ss_pred HHHHHHHHHHH
Q 022886 272 HSVYKTLIQKT 282 (290)
Q Consensus 272 ~~iy~~~~~~~ 282 (290)
+++|..++.+.
T Consensus 436 ~~~~~~~l~~~ 446 (449)
T PRK07907 436 AVAEALLLARL 446 (449)
T ss_pred HHHHHHHHHHH
Confidence 88888887664
No 38
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.96 E-value=5.6e-28 Score=224.56 Aligned_cols=243 Identities=14% Similarity=0.084 Sum_probs=177.4
Q ss_pred hhcccccCCCceeEEEEEEecccCC-----CCCcccHHHHHHccccc--------------------cCCCCc-------
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDALVKDGLLN--------------------KLKGGP------- 49 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g-----~~~~~G~~~l~~~~~~~--------------------~~~~d~------- 49 (290)
++|++.+..++++|.|+|++|||++ + .|++.+......+ ++.+++
T Consensus 108 ~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (412)
T PRK12893 108 RTLNDAGIRTRRPIEVVSWTNEEGARFAPAM---LGSGVFTGALPLDDALARRDADGITLGEALARIGYRGTARVGRRAV 184 (412)
T ss_pred HHHHHcCCCCCCCeEEEEEcccccccccccc---ccHHHHhCcCChHHHHhccCCCCCCHHHHHHHcCCCcccccccCCc
Confidence 5778888889999999999999986 4 6888887542210 111221
Q ss_pred --EEEec----------CCCCCceeeeceeEEEEEEEEecCCCCCC-CC-CCCCHHHHHHHHHHHHHhhhcCCCCCCCcc
Q 022886 50 --LYWID----------TADKQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHPKE 115 (290)
Q Consensus 50 --~i~~e----------~~~~~i~~~~~g~~~~~v~v~G~~~Hs~~-p~-~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~ 115 (290)
.+..+ +....++++++|..+++|+++|+++|++. |+ .|.||+..+++++++|+++..+. .+
T Consensus 185 ~~~~~~~~~~g~~~~~~~~~~~i~~~~kG~~~~~i~v~G~~aHas~~p~~~G~NAI~~a~~~i~~l~~~~~~~-~~---- 259 (412)
T PRK12893 185 DAYLELHIEQGPVLEAEGLPIGVVTGIQGIRWLEVTVEGQAAHAGTTPMAMRRDALVAAARIILAVERIAAAL-AP---- 259 (412)
T ss_pred cEEEEEEeccCHHHHHCCCcEEEEeeecccEEEEEEEEEECCCcCCCcchhccCHHHHHHHHHHHHHHHHHhc-CC----
Confidence 11111 11345778999999999999999999885 84 89999999999999998764321 11
Q ss_pred cccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCccccccCCCC
Q 022886 116 QVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDEN 195 (290)
Q Consensus 116 ~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (290)
..+++++.|+.++...|+||++|++++|+|++|+++.+++.+++++.+++....
T Consensus 260 -------~~~~~vg~i~ggg~~~NvVP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~------------------- 313 (412)
T PRK12893 260 -------DGVATVGRLRVEPNSRNVIPGKVVFTVDIRHPDDARLDAMEAALRAACAKIAAA------------------- 313 (412)
T ss_pred -------CceEEEEEEEeeCCCceEECCeeEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 357889999933579999999999999999999999999999988888875432
Q ss_pred cceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCC-CccccccCcchHHHHhhcCCcEEEEcCCCC--ccc-----
Q 022886 196 IRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSITGTLPLIRELQDEGFDVQTAGYGMP--PLQ----- 267 (290)
Q Consensus 196 ~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~-~~~~~~gg~d~~~~~~~~g~~~v~~Gpg~~--~~~----- 267 (290)
++.++++.....+|++. .|+++++.++++.++. |.+ .+..+.|++| +++|...+.+++.|||+.. .|+
T Consensus 314 ~~~~v~~~~~~~~~~~~--~d~~l~~~l~~~~~~~-g~~~~~~~~~g~tD-~~~~~~~~p~~v~~gp~~~~~~Hs~dE~v 389 (412)
T PRK12893 314 RGVQVTVETVWDFPPVP--FDPALVALVEAAAEAL-GLSHMRMVSGAGHD-AMFLARVAPAAMIFVPCRGGISHNEAEDT 389 (412)
T ss_pred cCCeEEEEEEecCCCcC--CCHHHHHHHHHHHHHc-CCCccccCCccHHH-HHHHHhhCCEEEEEeecCCCCCCCccccC
Confidence 13455555444567755 5788999999998874 643 3445678888 5567665555788999743 354
Q ss_pred ----cchHHHHHHHHHHHH
Q 022886 268 ----FTSFHSVYKTLIQKT 282 (290)
Q Consensus 268 ----~~~~~~iy~~~~~~~ 282 (290)
+...+++|..++...
T Consensus 390 ~i~~l~~~~~i~~~ll~~~ 408 (412)
T PRK12893 390 EPADLAAGANVLLHAVLEL 408 (412)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 567778888877654
No 39
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.96 E-value=7.8e-28 Score=222.77 Aligned_cols=242 Identities=14% Similarity=0.065 Sum_probs=178.7
Q ss_pred ChhcccccCCCceeEEEEEEecccC-----CCCCcccHHHHHHccc-------cc--c---------CCCCcEEEecCCC
Q 022886 1 MRKLGETKLKLKSTVIAVFIASEEN-----SAITGVGVDALVKDGL-------LN--K---------LKGGPLYWIDTAD 57 (290)
Q Consensus 1 ~~~L~~~~~~~~~~i~~~~~~dEE~-----g~~~~~G~~~l~~~~~-------~~--~---------~~~d~~i~~e~~~ 57 (290)
+++|++.+.+++++|.|++++|||+ ++ .|++.++.... .+ + ..++++++.+++.
T Consensus 98 ~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~---~Gs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~ 174 (401)
T TIGR01879 98 VDALKEAYVVPLHPIEVVAFTEEEGSRFPYGM---WGSRNMVGLANPEDVRNICDAKGISFAEAMKACGPDLPNQPLRPR 174 (401)
T ss_pred HHHHHHcCCCCCCCeEEEEEeCCcCcCccccc---ccHHHHhcccchhHHHhCcCCCCCCHHHHHHHcCCCccccccccc
Confidence 3678889999999999999999997 44 78888874220 00 1 1233444334332
Q ss_pred -----------------------CCceeeeceeEEEEEEEEecCCCCCC-CC-CCCCHHHHHHHHHHHHHhhhcCCCCCC
Q 022886 58 -----------------------KQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPH 112 (290)
Q Consensus 58 -----------------------~~i~~~~~g~~~~~v~v~G~~~Hs~~-p~-~g~NAi~~~~~~i~~l~~~~~~~~~~~ 112 (290)
..++.+++|..|++|+++|+++|++. |+ .|.||+..+++++.+|+++..+. .
T Consensus 175 ~~~~~~~e~Hieqg~~l~~~g~~~~v~~~~~G~~~~~i~v~G~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l~~~~-~-- 251 (401)
T TIGR01879 175 GDIKAYVELHIEQGPVLESNGQPIGVVNAIAGQRWYKVTLNGESNHAGTTPMSLRRDPLVAASRIIHQVEEKAKRM-G-- 251 (401)
T ss_pred ccccEEEEEEEcCCcChhhCCCeEEEEEEecCcEEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc-C--
Confidence 23678999999999999999999986 53 57899999999999998764321 1
Q ss_pred CcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCccccccC
Q 022886 113 PKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLP 192 (290)
Q Consensus 113 ~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 192 (290)
.+.+.+++.|+.++...|+||++|++.+|+|+.|+++.+++.+++++.+++..+.
T Consensus 252 ---------~~~~~~vg~i~~g~~~~NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~~~~~~~~---------------- 306 (401)
T TIGR01879 252 ---------DPTVGTVGKVEARPNGVNVIPGKVTFTLDLRHTDAAVLRDFTQQLENDIKAISDE---------------- 306 (401)
T ss_pred ---------CCeEEEEEEEEecCCceEEECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 1245689999933577999999999999999999988888888888888875432
Q ss_pred CCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCC-CCccccccCcchHHHHhhcCCcEEEEcCCCC--ccc--
Q 022886 193 DENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGH-VNPYSITGTLPLIRELQDEGFDVQTAGYGMP--PLQ-- 267 (290)
Q Consensus 193 ~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~-~~~~~~~gg~d~~~~~~~~g~~~v~~Gpg~~--~~~-- 267 (290)
.+.++++++...+|++. .|+++++.+++++++. |. .....+.|++| +++|...++|++.||||.. +|+
T Consensus 307 ---~~~~~~~~~~~~~~~~~--~d~~lv~~l~~a~~~~-g~~~~~~~~~ggtD-a~~~~~~~~~~v~fgPg~~~~aH~~d 379 (401)
T TIGR01879 307 ---RDIGIDIERWMDEEPVP--CSEELVAALTELCERL-GYNARVMVSGAGHD-AQILAPIVPIGMIFIPSINGISHNPA 379 (401)
T ss_pred ---cCceEEEEEeecCCCcC--CCHHHHHHHHHHHHHc-CCCccccccchHHH-HHHHHhhCCEEEEEecCCCCCcCCCC
Confidence 13455666555667754 6899999999999875 64 34445778888 5667777899999999874 354
Q ss_pred -------cchHHHHHHHHHH
Q 022886 268 -------FTSFHSVYKTLIQ 280 (290)
Q Consensus 268 -------~~~~~~iy~~~~~ 280 (290)
+...+++|.+++.
T Consensus 380 E~v~~e~l~~~~~vl~~~i~ 399 (401)
T TIGR01879 380 EWSNITDCAEGAKVLYLMVY 399 (401)
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 4455666666554
No 40
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.96 E-value=8.5e-28 Score=223.38 Aligned_cols=241 Identities=14% Similarity=0.082 Sum_probs=179.5
Q ss_pred ChhcccccCCCceeEEEEEEecccCCCCC--cccHHHH------------------------HHccccccCCCCcEEEec
Q 022886 1 MRKLGETKLKLKSTVIAVFIASEENSAIT--GVGVDAL------------------------VKDGLLNKLKGGPLYWID 54 (290)
Q Consensus 1 ~~~L~~~~~~~~~~i~~~~~~dEE~g~~~--~~G~~~l------------------------~~~~~~~~~~~d~~i~~e 54 (290)
+++|++.+..++++|.|++++|||++++. -.|++.+ .+.|+ ..|++++.+
T Consensus 107 ~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~ 182 (414)
T PRK12891 107 VRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSGVFFGVYPLEYLLSRRDDTGRTLGEHLARIGY----AGAEPVGGY 182 (414)
T ss_pred HHHHHHcCCCCCCCeEEEEecccccCcCCcccccHHHHhCCCCHHHHHhccCCCCCCHHHHHHHCCC----CcccccccC
Confidence 36788899999999999999999986310 0366543 33332 234555544
Q ss_pred CC-----------------C--CCceeeeceeEEEEEEEEecCCCCC-CCC-CCCCHHHHHHHHHHHHHhhhcCCCCCCC
Q 022886 55 TA-----------------D--KQPCIGTGGMIPWKLHVTGKLFHSG-LPH-KAINPLELAMEALKVIQTRFYKDFPPHP 113 (290)
Q Consensus 55 ~~-----------------~--~~i~~~~~g~~~~~v~v~G~~~Hs~-~p~-~g~NAi~~~~~~i~~l~~~~~~~~~~~~ 113 (290)
|+ + ..++.+++|..+++|+++|+++|++ .|+ .|.||+..+++++.+|++..... .
T Consensus 183 ~~~~~~e~h~e~g~vle~~~~~~~iv~~~kG~~~~~v~v~Gk~aHa~~~P~~~g~nAI~~aa~~i~~l~~~~~~~-~--- 258 (414)
T PRK12891 183 PVHAAYELHIEQGAILERAGKTIGVVTAGQGQRWYEVTLTGVDAHAGTTPMAFRRDALVGAARMIAFLDALGRRD-A--- 258 (414)
T ss_pred CCCEEEEEEeCCCHHHHHCCCcEEEEeeccCcEEEEEEEEeECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc-C---
Confidence 42 1 2467899999999999999999998 586 58999999999999998764321 1
Q ss_pred cccccCcCCCCceeeeEEecCC-CccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCccccccC
Q 022886 114 KEQVYGFETPSTMKPTQWSYPG-GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLP 192 (290)
Q Consensus 114 ~~~~~~~~~~~~i~~~~i~~gg-~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 192 (290)
.+.+++++.|+ +| ...|+||++|++.+|+|++|+++.+++.++|++.++++.+.
T Consensus 259 --------~~~t~~vg~I~-gG~~~~NvVP~~~~~~~diR~~~~e~~e~v~~~i~~~~~~~~~~---------------- 313 (414)
T PRK12891 259 --------PDARATVGMID-ARPNSRNTVPGECFFTVEFRHPDDAVLDRLDAALRAELARIADE---------------- 313 (414)
T ss_pred --------CCeEEEEEEEE-eeCCCcceECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 14688999999 76 68999999999999999999888888988888888875432
Q ss_pred CCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCC-CccccccCcchHHHHhhcCCcE-EEEcCCCCc--cc-
Q 022886 193 DENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSITGTLPLIRELQDEGFDV-QTAGYGMPP--LQ- 267 (290)
Q Consensus 193 ~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~-~~~~~~gg~d~~~~~~~~g~~~-v~~Gpg~~~--~~- 267 (290)
++.+++++....+|++. .|+++++.+++++++ .|.+ ....+.|++| +.++ ..|+|+ +.|||+... |+
T Consensus 314 ---~~~~~~~~~~~~~~~~~--~d~~lv~~l~~a~~~-~G~~~~~~~~~ggtD-a~~~-~~giPt~~~~gp~~~~~aH~~ 385 (414)
T PRK12891 314 ---TGLRADIEQIFGYAPAP--FAPGCIDAVRDAARA-LGLSHMDIVSGAGHD-ACFA-ARGAPTGMIFVPCVDGLSHNE 385 (414)
T ss_pred ---hCCEEEEEEEecCCCcC--CCHHHHHHHHHHHHH-cCCCceecCCcchHH-HHHH-HhhCCEEEEEEcCCCCCCCCc
Confidence 13556666555677764 578999999999876 4753 3445778888 5655 459998 779998753 54
Q ss_pred --------cchHHHHHHHHHHHH
Q 022886 268 --------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 268 --------~~~~~~iy~~~~~~~ 282 (290)
+...+++|..++.+.
T Consensus 386 dE~v~i~~l~~~~~il~~~l~~~ 408 (414)
T PRK12891 386 AEAITPEWFAAGADVLLRAVLQS 408 (414)
T ss_pred cccCCHHHHHHHHHHHHHHHHHH
Confidence 556678888776554
No 41
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.96 E-value=1.1e-27 Score=222.64 Aligned_cols=246 Identities=13% Similarity=0.045 Sum_probs=179.9
Q ss_pred hhcccccCCCceeEEEEEEecccCCCC--CcccHHHHHHccc--------------------cccCCCCcEEE--ecCC-
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAI--TGVGVDALVKDGL--------------------LNKLKGGPLYW--IDTA- 56 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~--~~~G~~~l~~~~~--------------------~~~~~~d~~i~--~e~~- 56 (290)
++|++.+..++++|.|++++|||+++. ...|++.+.+... ..+..+|+++. +||+
T Consensus 106 ~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ep~~ 185 (414)
T PRK12890 106 AALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSRALAGTLDVEAVLATRDDDGTTLAEALRRIGGDPDALPGALRPPGA 185 (414)
T ss_pred HHHHHcCCCCCCCeEEEEEecccccccCCccccHHHHHcccChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCC
Confidence 567778888899999999999997421 0057766644211 01233444332 5552
Q ss_pred --------------------CCCceeeeceeEEEEEEEEecCCCCCC-CCC-CCCHHHHHHHHHHHHHhhhcCCCCCCCc
Q 022886 57 --------------------DKQPCIGTGGMIPWKLHVTGKLFHSGL-PHK-AINPLELAMEALKVIQTRFYKDFPPHPK 114 (290)
Q Consensus 57 --------------------~~~i~~~~~g~~~~~v~v~G~~~Hs~~-p~~-g~NAi~~~~~~i~~l~~~~~~~~~~~~~ 114 (290)
...++.+++|..|++|+++|+++|++. |+. +.||+..+++++.+|++...+. .
T Consensus 186 ~~~~~~~h~~~g~~~~~~~~~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~nAI~~~~~~i~~l~~~~~~~-~---- 260 (414)
T PRK12890 186 VAAFLELHIEQGPVLEAEGLPIGVVTAIQGIRRQAVTVEGEANHAGTTPMDLRRDALVAAAELVTAMERRARAL-L---- 260 (414)
T ss_pred ccEEEEEeeCcCHHHHhCCCceEEEEeecCcEEEEEEEEEECCCCCcCChhhccCHHHHHHHHHHHHHHHHHhc-C----
Confidence 245778999999999999999999985 854 5899999999999998764221 1
Q ss_pred ccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCccccccCCC
Q 022886 115 EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDE 194 (290)
Q Consensus 115 ~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (290)
.+.+++++.|+.++...|+||++|++++|+|++|+++.+++.++|++.+++..+..
T Consensus 261 -------~~~~~~~g~i~~gg~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~----------------- 316 (414)
T PRK12890 261 -------HDLVATVGRLDVEPNAINVVPGRVVFTLDLRSPDDAVLEAAEAALLAELEAIAAAR----------------- 316 (414)
T ss_pred -------CCeEEEEEEEEECCCCceEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHh-----------------
Confidence 13567899999335899999999999999999999999999999999888764321
Q ss_pred CcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCC-CccccccCcchHHHHhhcCCcEEEEcCCCC--ccc----
Q 022886 195 NIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSITGTLPLIRELQDEGFDVQTAGYGMP--PLQ---- 267 (290)
Q Consensus 195 ~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~-~~~~~~gg~d~~~~~~~~g~~~v~~Gpg~~--~~~---- 267 (290)
+.+++++....+|++. .++++++.+++++++. |.+ ....+.|++| +++|...|.+++.|||+.. .|+
T Consensus 317 --~~~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~-g~~~~~~~~~g~tD-a~~~~~~gp~~~~~gp~~~~~aHs~dE~ 390 (414)
T PRK12890 317 --GVRIELERLSRSEPVP--CDPALVDAVEAAAARL-GYPSRRMPSGAGHD-AAAIARIGPSAMIFVPCRGGISHNPEEA 390 (414)
T ss_pred --CCeEEEEEeecCCCcC--CCHHHHHHHHHHHHHc-CCCceecCCcccHH-HHHHHhhCCEEEEEecCCCCCCCCcCcc
Confidence 3455665555667654 5789999999999874 754 3445678888 5667777877778999764 454
Q ss_pred -----cchHHHHHHHHHHHH
Q 022886 268 -----FTSFHSVYKTLIQKT 282 (290)
Q Consensus 268 -----~~~~~~iy~~~~~~~ 282 (290)
+...+++|..++.+.
T Consensus 391 v~i~~l~~~~~i~~~ll~~l 410 (414)
T PRK12890 391 MDPEDLAAGARVLLDAVLRL 410 (414)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 567778888877654
No 42
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=99.96 E-value=2.1e-27 Score=215.84 Aligned_cols=225 Identities=22% Similarity=0.339 Sum_probs=186.6
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCC----Ccee--e--eceeEEEEEE
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK----QPCI--G--TGGMIPWKLH 73 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~----~i~~--~--~~g~~~~~v~ 73 (290)
++|++....++++|+|+||++||+++ |++.|+++|.++++ .|+++..|+.++ .+.+ | ..+...++++
T Consensus 116 ~~L~~~~~~~~Gtv~~ifQPAEE~~~----Ga~~mi~~G~~~~~-vD~v~g~H~~p~~~~g~v~~~~G~~~aa~d~~~i~ 190 (392)
T COG1473 116 LALAEHKDNLPGTVRLIFQPAEEGGG----GAKAMIEDGVFDDF-VDAVFGLHPGPGLPVGTVALRPGALMAAADEFEIT 190 (392)
T ss_pred HHHHhhhhhCCcEEEEEecccccccc----cHHHHHhcCCcccc-ccEEEEecCCCCCCCceEEeecccceeecceEEEE
Confidence 56777767899999999999999984 89999999998886 799999999644 3322 2 5677889999
Q ss_pred EEecCCCCCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEE
Q 022886 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (290)
Q Consensus 74 v~G~~~Hs~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~ 153 (290)
++|+++|++.||.++||+..++.++.+|+.+..+..++.+ +..++++.++ +|.+.|+||+++++.+++|.
T Consensus 191 ~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~~p~~---------~~vv~vg~~~-aG~a~NVIpd~A~l~gtvR~ 260 (392)
T COG1473 191 FKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVDPLD---------SAVVTVGKIE-AGTAANVIPDSAELEGTIRT 260 (392)
T ss_pred EEeCCcccCCcccccCHHHHHHHHHHHHHHHHhcccCCcc---------CeEEEEEEec-CCCcCCcCCCeeEEEEEeec
Confidence 9999999999999999999999999999998777766542 4678899999 99999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCC
Q 022886 154 TPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGH 233 (290)
Q Consensus 154 ~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~ 233 (290)
. ..++.+.+.+.+++++++++ ..+++++++.+...+|++. +|..+.+.+++++++..|+
T Consensus 261 ~----~~~~~~~~~~~i~~ia~g~a---------------~~~g~~~ei~~~~~~p~~~--Nd~~~~~~~~~~~~~~~~~ 319 (392)
T COG1473 261 F----SDEVREKLEARIERIAKGIA---------------AAYGAEAEIDYERGYPPVV--NDPALTDLLAEAAEEVGGE 319 (392)
T ss_pred C----CHHHHHHHHHHHHHHHHHHH---------------HHhCCeEEEEecCCCCCcc--CCHHHHHHHHHHHHHhccc
Confidence 9 57888888888888887776 5568899999988999877 7888999999999999874
Q ss_pred C-----CccccccCcchHHHHhh-cCCcEEEEcCCC
Q 022886 234 V-----NPYSITGTLPLIRELQD-EGFDVQTAGYGM 263 (290)
Q Consensus 234 ~-----~~~~~~gg~d~~~~~~~-~g~~~v~~Gpg~ 263 (290)
. ....+.||.|++.+.+. +| ..+.+|.+.
T Consensus 320 ~~~~~~~~~~~~gsEDf~~~~~~~Pg-~~~~lG~~~ 354 (392)
T COG1473 320 EVVVVELPPSMAGSEDFGYYLEKVPG-AFFFLGTGS 354 (392)
T ss_pred cceecccCCCCCccchHHHHHHhCCe-eEEEeecCc
Confidence 2 22234589999887665 33 344556543
No 43
>PRK13381 peptidase T; Provisional
Probab=99.96 E-value=2.3e-27 Score=219.86 Aligned_cols=238 Identities=15% Similarity=0.112 Sum_probs=176.0
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCC-CCCceeeeceeEEEEEEEEecCCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFH 80 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~-~~~i~~~~~g~~~~~v~v~G~~~H 80 (290)
++|++.+ .++++|.|+|++|||+|+ .|+++++.++ +++|+++..|.. .+.+..+++|..+++|+++|+++|
T Consensus 151 ~~l~~~~-~~~g~i~~~~~~dEE~g~---~G~~~~~~~~----~~~d~~~~~~~~~~~~i~~~~~G~~~~~v~v~Gk~aH 222 (404)
T PRK13381 151 ENLTENE-VEHGDIVVAFVPDEEIGL---RGAKALDLAR----FPVDFAYTIDCCELGEVVYENFNAASAEITITGVTAH 222 (404)
T ss_pred HHHHhcC-CCCCCEEEEEEccccccc---ccHHHHHHhc----CCCCEEEEecCCCcceEEEecCcceEEEEEEEeEecC
Confidence 4555554 468899999999999987 7999998654 345777766543 346778999999999999999999
Q ss_pred CC-CCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCCh
Q 022886 81 SG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (290)
Q Consensus 81 s~-~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~ 159 (290)
++ .|+.|.||+..+++++.+|++...+..... ...+++++.++ ++ |++|++.+|+|+.|+++.
T Consensus 223 a~~~p~~g~NAI~~a~~~i~~l~~~~~~~~~~~---------~~~~i~v~~i~-g~------p~~~~~~~diR~~~~~~~ 286 (404)
T PRK13381 223 PMSAKGVLVNPILMANDFISHFPRQETPEHTEG---------REGYIWVNDLQ-GN------VNKAKLKLIIRDFDLDGF 286 (404)
T ss_pred CCCCcccCcCHHHHHHHHHHhCCccCCCCCCCC---------cccEEEEEeEE-eC------cceEEEEEEEecCCHHHH
Confidence 87 489999999999999999876422211110 12346777776 42 899999999999998888
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecC--CCccccCCCCHHHHHHHHHHHHHhCCC-Cc
Q 022886 160 TDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEA--TNGVACNLDSRGFHVLCKATEEVVGHV-NP 236 (290)
Q Consensus 160 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~d~~~~~~l~~a~~~~~g~~-~~ 236 (290)
+++.++|++.++++++... ...+++++... .++..++.++++++.+++++++. |.+ ..
T Consensus 287 e~i~~~i~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~lv~~l~~a~~~~-g~~~~~ 347 (404)
T PRK13381 287 EARKQFIEEVVAKINAKYP------------------TARVSLTLTDQYSNISNSIKDDRRAVDLAFDAMKEL-GIEPKV 347 (404)
T ss_pred HHHHHHHHHHHHHHHHHcC------------------CcEEEEEEEeCCchhhcccccCHHHHHHHHHHHHHc-CCCeee
Confidence 8888888888887654211 13445544333 34455678999999999999874 654 33
Q ss_pred cccccCcchHHHHhhcCCcEEEEcCCCC-ccc---------cchHHHHHHHHHHHHH
Q 022886 237 YSITGTLPLIRELQDEGFDVQTAGYGMP-PLQ---------FTSFHSVYKTLIQKTW 283 (290)
Q Consensus 237 ~~~~gg~d~~~~~~~~g~~~v~~Gpg~~-~~~---------~~~~~~iy~~~~~~~~ 283 (290)
..+.|++| +++|...|+|++.||||.. +|+ +.+.+++|..++..++
T Consensus 348 ~~~~g~tD-a~~~~~~giP~v~~GpG~~~aH~~dE~v~i~~l~~~~~v~~~~~~~~~ 403 (404)
T PRK13381 348 IPMRGGTD-GAALSAKGLPTPNLFTGAHNFHSRFEFLPVSSFVKSYEVTITICLLAA 403 (404)
T ss_pred ccCCccch-HHHHhcCCCCeEEECccccCCcCcceeEEHHHHHHHHHHHHHHHHHhc
Confidence 35678888 5667778999999999875 454 5677888888876643
No 44
>PRK07079 hypothetical protein; Provisional
Probab=99.96 E-value=6.4e-27 Score=220.81 Aligned_cols=253 Identities=14% Similarity=0.111 Sum_probs=182.4
Q ss_pred hhccc-ccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCC-----CCceeeeceeEEEEEEEE
Q 022886 2 RKLGE-TKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-----KQPCIGTGGMIPWKLHVT 75 (290)
Q Consensus 2 ~~L~~-~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~-----~~i~~~~~g~~~~~v~v~ 75 (290)
++|++ .+..++++|.|+|++|||+|+ .|++++++++. ..+++|++|+.||+. ..+++++||..+++|+++
T Consensus 140 ~~l~~~~~~~~~~~i~~~~~~dEE~g~---~G~~~l~~~~~-~~~~~d~~iv~e~~~~~~~~~~i~~g~kG~~~~~v~v~ 215 (469)
T PRK07079 140 EQVLAARGGRLGFNVKLLIEMGEEIGS---PGLAEVCRQHR-EALAADVLIASDGPRLSAERPTLFLGSRGAVNFRLRVN 215 (469)
T ss_pred HHHHHhcCCCCCCCEEEEEECccccCC---ccHHHHHHHhH-HhcCCCEEEEeCCCccCCCCeEEEEecceEEEEEEEEe
Confidence 34443 346788999999999999998 89999998752 235679999999863 247889999999999999
Q ss_pred ec--CCCCCCC-CCCCCHHHHHHHHHHHHHhhhcCC----C----------------CCCCccccc--------------
Q 022886 76 GK--LFHSGLP-HKAINPLELAMEALKVIQTRFYKD----F----------------PPHPKEQVY-------------- 118 (290)
Q Consensus 76 G~--~~Hs~~p-~~g~NAi~~~~~~i~~l~~~~~~~----~----------------~~~~~~~~~-------------- 118 (290)
|+ +.||+.. ..+.||+..++++|.++.+...+- + .........
T Consensus 216 G~~~~~hs~~~~g~~~nai~~l~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (469)
T PRK07079 216 LRDGAHHSGNWGGLLRNPGTVLAHAIASLVDARGRIQVPGLRPPPLPAAVRAALADITVGGGPGDPAIDPDWGEPGLTPA 295 (469)
T ss_pred eCCCCCCCCccccccCCHHHHHHHHHHHhCCCCCCEecCCccCCCCCHHHHHHHHhCCCchhhhccCcccccCCCCcCHH
Confidence 98 4566632 233799999999999885421000 0 000000000
Q ss_pred -CcCCCCceeeeEEecCCC---ccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCccccccCCC
Q 022886 119 -GFETPSTMKPTQWSYPGG---GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDE 194 (290)
Q Consensus 119 -~~~~~~~i~~~~i~~gg~---~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (290)
.....+++|++.|+ +|. ..|+||++|++.+|+|++|+++.+++.++|++++++...
T Consensus 296 ~~~~~~~t~nv~~i~-gG~~~~~~NvVP~~a~~~vdiR~~P~~~~e~v~~~l~~~i~~~~~------------------- 355 (469)
T PRK07079 296 ERVFGWNTLEVLAFK-TGNPDAPVNAIPGSARAVCQLRFVVGTDWENLAPHLRAHLDAHGF------------------- 355 (469)
T ss_pred HHHhhCCceEEEeee-cCCCCCcceEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhcCC-------------------
Confidence 01123578999999 773 589999999999999999999999999999999886310
Q ss_pred CcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCCCc-cc-cccCcchHHHHhh-cCCcEEEEcCC---CCccc-
Q 022886 195 NIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNP-YS-ITGTLPLIRELQD-EGFDVQTAGYG---MPPLQ- 267 (290)
Q Consensus 195 ~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~~~-~~-~~gg~d~~~~~~~-~g~~~v~~Gpg---~~~~~- 267 (290)
..+++++....+++.++.++++++.+++++++.+|.++. .. ..|++| +++|.. .|+|++.||++ ...|+
T Consensus 356 ---~~v~~~~~~~~~p~~~~~~~~~v~~l~~a~~~~~g~~~~~~~~~~g~~d-~~~~~~~~giP~v~~g~~~~~~~~H~~ 431 (469)
T PRK07079 356 ---PMVEVTVERGSPATRLDPDDPWVRWALASIARTTGKKPALLPNLGGSLP-NDVFADILGLPTLWVPHSYPACSQHAP 431 (469)
T ss_pred ---CCeEEEEeCCCCceecCCCCHHHHHHHHHHHHHhCCCCceecCCCcchh-HHHHHHHhCCCEEEecCCCCCccCcCC
Confidence 124556666778888899999999999999998886533 33 344446 555654 79999988654 22354
Q ss_pred --------cchHHHHHHHHHHHH
Q 022886 268 --------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 268 --------~~~~~~iy~~~~~~~ 282 (290)
+.+.+++|..++...
T Consensus 432 dE~v~l~~l~~~~~~~~~~~~~~ 454 (469)
T PRK07079 432 NEHLLASVAREGLQIMAGLFWDL 454 (469)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 566777888777654
No 45
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=99.96 E-value=3e-27 Score=216.15 Aligned_cols=219 Identities=20% Similarity=0.272 Sum_probs=169.3
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCCC--------ceeeeceeEEEEEE
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQ--------PCIGTGGMIPWKLH 73 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~--------i~~~~~g~~~~~v~ 73 (290)
+.|++.+..++++|.|+|++|||.+ .|++++++++.+++ .|+++++||+... ...+++|..+++++
T Consensus 103 ~~l~~~~~~~~~~i~~~~~~dEE~~----~G~~~~~~~~~~~~--~d~~i~~e~~~~~~~~~~~~~~~~~~~g~~~~~i~ 176 (363)
T TIGR01891 103 KLLKKLADLLEGTVRLIFQPAEEGG----GGATKMIEDGVLDD--VDAILGLHPDPSIPAGTVGLRPGTIMAAADKFEVT 176 (363)
T ss_pred HHHHhchhhCCceEEEEEeecCcCc----chHHHHHHCCCCCC--cCEEEEECCCCCCCCeEEEECCCcceeecceEEEE
Confidence 3456666677899999999999985 69999998876543 4789999986421 22467899999999
Q ss_pred EEecCCCCCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEE
Q 022886 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (290)
Q Consensus 74 v~G~~~Hs~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~ 153 (290)
++|+++|++.|+.|.||+..++++++++++...+..... .+.+++++.|+ +|...|+||++|++.+|+|+
T Consensus 177 ~~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~---------~~~~~~i~~i~-gG~~~nvvP~~~~~~~diR~ 246 (363)
T TIGR01891 177 IHGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNVDPS---------RPAVVTVGIIE-AGGAPNVIPDKASMSGTVRS 246 (363)
T ss_pred EEeecccccCcccccCHHHHHHHHHHHHHHHhhccCCCC---------CCcEEEEEEEE-cCCCCcEECCeeEEEEEEEe
Confidence 999999999999999999999999999987533221111 13578999999 99999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCC
Q 022886 154 TPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGH 233 (290)
Q Consensus 154 ~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~ 233 (290)
+|+.+.+++.+++++.++++.... +.++++++...+|+. ..++++++.+++++++.+|.
T Consensus 247 ~~~~~~e~~~~~i~~~~~~~~~~~-------------------~~~ve~~~~~~~p~~--~~~~~l~~~l~~a~~~~~g~ 305 (363)
T TIGR01891 247 LDPEVRDQIIDRIERIVEGAAAMY-------------------GAKVELNYDRGLPAV--TNDPALTQILKEVARHVVGP 305 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHh-------------------CCeEEEEEecCCCCc--cCCHHHHHHHHHHHHHhcCc
Confidence 998888888888888887754321 345666665556653 36789999999999998774
Q ss_pred -C-C--ccccccCcchHHHHhhcCCcEEEE
Q 022886 234 -V-N--PYSITGTLPLIRELQDEGFDVQTA 259 (290)
Q Consensus 234 -~-~--~~~~~gg~d~~~~~~~~g~~~v~~ 259 (290)
. . +..+.||+| ++++.. .+|++.+
T Consensus 306 ~~~~~~~~~~~gg~D-a~~~~~-~~P~~~~ 333 (363)
T TIGR01891 306 ENVAEDPEVTMGSED-FAYYSQ-KVPGAFF 333 (363)
T ss_pred cceeccCCCCccccC-HHHHHH-hCCeeEE
Confidence 2 1 335788999 455665 4888664
No 46
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=99.95 E-value=8.9e-27 Score=219.35 Aligned_cols=242 Identities=16% Similarity=0.085 Sum_probs=173.1
Q ss_pred ChhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEE---------EecCCCCCc-----------
Q 022886 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLY---------WIDTADKQP----------- 60 (290)
Q Consensus 1 ~~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i---------~~e~~~~~i----------- 60 (290)
+++|++.+..++++|.|+|++|||+|+ .|++++++++. .+|+++ ++|++...+
T Consensus 129 ~~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~~~~~~----~~d~~~~~d~~~~~~~ge~g~~~~~~~~~~~~~~~ 201 (466)
T TIGR01886 129 MKILKELGLPPSKKIRFVVGTNEETGW---VDMDYYFKHEE----TPDFGFSPDAEFPIINGEKGNFTLELSFKGDNKGD 201 (466)
T ss_pred HHHHHHhCCCCCCCEEEEEECccccCc---ccHHHHHhcCc----CCCEEEECCCCceeEEEecceEEEEEEEecCCCCc
Confidence 367888888999999999999999998 89999998654 245543 344332110
Q ss_pred ----------------------e---------------eeeceeE---------EEEEEEEecCCCCCCCCCCCCHHHHH
Q 022886 61 ----------------------C---------------IGTGGMI---------PWKLHVTGKLFHSGLPHKAINPLELA 94 (290)
Q Consensus 61 ----------------------~---------------~~~~g~~---------~~~v~v~G~~~Hs~~p~~g~NAi~~~ 94 (290)
+ .+++|.. |++|+++|+++|+|.|+.|.||+..|
T Consensus 202 ~~~~~~~~g~~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~i~v~G~~aH~s~P~~G~NAi~~~ 281 (466)
T TIGR01886 202 YVLDSFKAGLAENMVPQVARAVISGPDAEALKAAYESFLADKASLDGSFEINDESATIVLIGKGAHGAAPQVGINSATFL 281 (466)
T ss_pred eeEEEEEcCCcCCccCCeeEEEEecCCHHHHHHHHHHHHhhccCceEEEEEeCCEEEEEEEeeEcccCCCCCCcCHHHHH
Confidence 0 1244433 78899999999999999999999999
Q ss_pred HHHHHHH-------------HhhhcCC-CCCC-CcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCCh
Q 022886 95 MEALKVI-------------QTRFYKD-FPPH-PKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (290)
Q Consensus 95 ~~~i~~l-------------~~~~~~~-~~~~-~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~ 159 (290)
+++|.++ .+..... .... .......+....++|++.|+ +|.. | ++|++.+|+|++|+++.
T Consensus 282 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~S~nvgvI~-gG~~-~---~~~~l~iD~R~~Pge~~ 356 (466)
T TIGR01886 282 ALFLNQYAFAGGAKNFIHFLAEVEHEDFYGEKLGIAFHDELMGDLAMNAGMFD-FDHA-N---KESKLLLNFRYPQGTSP 356 (466)
T ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCcccCCCcccccCcCceEEEeEEEE-EecC-C---ceEEEEEEEecCCCCCH
Confidence 9988873 2111010 0000 00001123456789999999 7654 3 79999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEec-CCCccccCCCCHHHHHHHHHHHHHhCCC-Ccc
Q 022886 160 TDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE-ATNGVACNLDSRGFHVLCKATEEVVGHV-NPY 237 (290)
Q Consensus 160 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~d~~~~~~l~~a~~~~~g~~-~~~ 237 (290)
+++.++|++.+... +++++.. ..+|+.++.++++++.+.+++++++|.+ .+.
T Consensus 357 eev~~eI~~~i~~~--------------------------~~v~~~~~~~~P~~~~~ds~lv~~l~~a~~~v~G~~~~~~ 410 (466)
T TIGR01886 357 ETMQKQVLDKFGGI--------------------------VDVTYNGHFEEPHYVPGSDPLVQTLLKVYEKHTGKKGHEV 410 (466)
T ss_pred HHHHHHHHHHHhcc--------------------------cEEEEecccCCCcccCCCCHHHHHHHHHHHHHhCCCCcee
Confidence 99999988877641 1223222 3455667788999999999999998864 455
Q ss_pred ccccCcchHHHHhhcCCcEEEEcCCCC--ccc---------cchHHHHHHHHHHHH
Q 022886 238 SITGTLPLIRELQDEGFDVQTAGYGMP--PLQ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 238 ~~~gg~d~~~~~~~~g~~~v~~Gpg~~--~~~---------~~~~~~iy~~~~~~~ 282 (290)
.++|+|| +++|. .++|+..||||+. +|+ +..++++|..++.+.
T Consensus 411 ~~~ggTD-a~~~~-~~i~~gv~gPG~~~~aH~~dE~V~i~el~~a~~iy~~~i~~l 464 (466)
T TIGR01886 411 IIGGGTY-GRLLE-RGVAYGAMFEGGPDVMHQANEFMMLDDLILAAAIYAEAIYEL 464 (466)
T ss_pred eecCccH-HHhcc-cccccccccCCCCCCccCCCcceEHHHHHHHHHHHHHHHHHH
Confidence 6788887 67776 4888888999975 455 567778888877664
No 47
>PRK08262 hypothetical protein; Provisional
Probab=99.95 E-value=3.6e-27 Score=223.53 Aligned_cols=253 Identities=17% Similarity=0.161 Sum_probs=179.8
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEE-----EecC-C--C----CCceeeeceeEE
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLY-----WIDT-A--D----KQPCIGTGGMIP 69 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i-----~~e~-~--~----~~i~~~~~g~~~ 69 (290)
++|++.+.+++++|.|+|++|||+|+ .|++++++.....+.++|+++ +.++ . . ..++.+++|..+
T Consensus 167 ~~l~~~~~~l~~~I~llf~~dEE~g~---~G~~~l~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~p~~~i~~~~kG~~~ 243 (486)
T PRK08262 167 EALLAQGFQPRRTIYLAFGHDEEVGG---LGARAIAELLKERGVRLAFVLDEGGAITEGVLPGVKKPVALIGVAEKGYAT 243 (486)
T ss_pred HHHHHcCCCCCCeEEEEEecccccCC---cCHHHHHHHHHHhcCCEEEEEeCCceecccccCCCCceEEeeEEeeeeeEE
Confidence 56777887899999999999999998 799999864211223344443 2221 1 1 235578999999
Q ss_pred EEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHhhhcCC-CC-----------CCCc-------------c---------
Q 022886 70 WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD-FP-----------PHPK-------------E--------- 115 (290)
Q Consensus 70 ~~v~v~G~~~Hs~~p~~g~NAi~~~~~~i~~l~~~~~~~-~~-----------~~~~-------------~--------- 115 (290)
++|+++|+++||+.|+. .||+..++++|.+|++...+. +. +... .
T Consensus 244 ~~i~v~G~~~Hss~p~~-~nai~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (486)
T PRK08262 244 LELTARATGGHSSMPPR-QTAIGRLARALTRLEDNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAK 322 (486)
T ss_pred EEEEEecCCCCCCCCCC-CCHHHHHHHHHHHHhhCCCCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHHhc
Confidence 99999999999999998 999999999999987631000 00 0000 0
Q ss_pred -cccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCccccccCCC
Q 022886 116 -QVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDE 194 (290)
Q Consensus 116 -~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (290)
........++++++.|+ ||...|+||++|++++|+|++|+++.+++.++|++.+++.
T Consensus 323 ~~~~~~~~~~t~~i~~I~-gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~--------------------- 380 (486)
T PRK08262 323 SPETAAMLRTTTAPTMLK-GSPKDNVLPQRATATVNFRILPGDSVESVLAHVRRAVADD--------------------- 380 (486)
T ss_pred CCccceeEEeeeeeeEEe-cCCccccCCCccEEEEEEEeCCCCCHHHHHHHHHHHhccC---------------------
Confidence 00001124688999999 9999999999999999999999999999988888777641
Q ss_pred CcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCC-C-CccccccCcchHHHHhhc-----CCcEEEEcCCCC--c
Q 022886 195 NIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGH-V-NPYSITGTLPLIRELQDE-----GFDVQTAGYGMP--P 265 (290)
Q Consensus 195 ~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~-~-~~~~~~gg~d~~~~~~~~-----g~~~v~~Gpg~~--~ 265 (290)
+.++++......|++.+++++++++.+++++++.+|. . .+..+.|++| +++|+.. +++++.+|||+. .
T Consensus 381 --~~~v~~~~~~~~~~~~~~~~~~lv~~l~~a~~~~~g~~~~~~~~~~g~tD-a~~~~~~~p~~~~~~~~~~gpg~~~~~ 457 (486)
T PRK08262 381 --RVEIEVLGGNSEPSPVSSTDSAAYKLLAATIREVFPDVVVAPYLVVGATD-SRHYSGISDNVYRFSPLRLSPEDLARF 457 (486)
T ss_pred --ceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCccccceeccccc-HHHHHHhcCCeEEECCccCCcccccCC
Confidence 1233333222366777788999999999999998874 2 2345678888 4667653 256677888753 4
Q ss_pred cc---------cchHHHHHHHHHHHHH
Q 022886 266 LQ---------FTSFHSVYKTLIQKTW 283 (290)
Q Consensus 266 ~~---------~~~~~~iy~~~~~~~~ 283 (290)
|+ +.+.+++|..++.+..
T Consensus 458 Ht~dE~i~i~~l~~~~~i~~~~l~~~~ 484 (486)
T PRK08262 458 HGTNERISVANYARMIRFYYRLIENAA 484 (486)
T ss_pred CCCCCceeHHHHHHHHHHHHHHHHHhh
Confidence 54 5677888888776653
No 48
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=99.95 E-value=2.1e-26 Score=213.79 Aligned_cols=253 Identities=22% Similarity=0.206 Sum_probs=183.4
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHcccc-ccCCCCcEEEecCC-----CCCceeeeceeEEEEEEEE
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLL-NKLKGGPLYWIDTA-----DKQPCIGTGGMIPWKLHVT 75 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~-~~~~~d~~i~~e~~-----~~~i~~~~~g~~~~~v~v~ 75 (290)
+.|++.+..++++|.++|++|||+++ .|++.++.++.. .++++|++|++||+ ...++++++|..+++|+++
T Consensus 129 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~~~~~~~~~~~~~~~~~~d~~i~~E~~~~~~~~~~~~~~~kG~~~~~v~v~ 205 (409)
T COG0624 129 SALKAAGGELPGDVRLLFTADEESGG---AGGKAYLEEGEEALGIRPDYEIVGEPTLESEGGDIIVVGHKGSLWLEVTVK 205 (409)
T ss_pred HHHHHhCCCCCeEEEEEEEeccccCC---cchHHHHHhcchhhccCCCEEEeCCCCCcccCCCeEEEcceeEEEEEEEEE
Confidence 45666677889999999999999998 788888876532 24568999999993 2345679999999999999
Q ss_pred ecCCCCCC--CCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEec-------CCCccceeCCceE
Q 022886 76 GKLFHSGL--PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSY-------PGGGINQIPGECT 146 (290)
Q Consensus 76 G~~~Hs~~--p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~-------gg~~~n~vP~~a~ 146 (290)
|+++|+|. |+.+.|++..+++.+.++...+.+...+. +..+.+++++.+.. +|...|+||++|+
T Consensus 206 G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~nviP~~~~ 278 (409)
T COG0624 206 GKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEG-------FDGPLGLNVGLILAGPGASVNGGDKVNVIPGEAE 278 (409)
T ss_pred eecccccccCCcccccHHHHHHHHHHHHHHHhccccccc-------ccCCccccccccccCCcccccCCccCceecceEE
Confidence 99999998 99999955444444444433222111110 00024445554441 3444699999999
Q ss_pred EEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHH
Q 022886 147 VSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKA 226 (290)
Q Consensus 147 ~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a 226 (290)
+.+|+|+.|.++.+++.+++++.+++.... .+..+++......+++.++.++++++.+.++
T Consensus 279 ~~~d~R~~p~~~~~~~~~~v~~~i~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 339 (409)
T COG0624 279 ATVDIRLLPGEDLDDVLEELEAELRAIAPK-------------------EGVEYEIEPGLGEPPLPVPGDSPLVAALAEA 339 (409)
T ss_pred EEEEEecCCcCCHHHHHHHHHHHHHHhccc-------------------cCceEEeccccCCccccCCCchHHHHHHHHH
Confidence 999999999999999999999999875431 0233344332456777788999999999999
Q ss_pred HHHHhCCCCccccccCcchHHHHhhcCCcEEEEcCCCC--ccc---------cchHHHHHHHHHHHHH
Q 022886 227 TEEVVGHVNPYSITGTLPLIRELQDEGFDVQTAGYGMP--PLQ---------FTSFHSVYKTLIQKTW 283 (290)
Q Consensus 227 ~~~~~g~~~~~~~~gg~d~~~~~~~~g~~~v~~Gpg~~--~~~---------~~~~~~iy~~~~~~~~ 283 (290)
+++.+|.+....+.|++..+++++..|+|++.||||.. +|+ +.+.+++|.+++.+..
T Consensus 340 ~~~~~g~~~~~~~~G~~~da~~~~~~~~~~~~fgp~~~~~~H~~~E~v~i~~l~~~~~~~~~~l~~l~ 407 (409)
T COG0624 340 AEELLGLPPEVSTGGGTHDARFFARLGIPAVIFGPGDIGLAHQPNEYVELEDLVKGAKVLARLLYELA 407 (409)
T ss_pred HHHhhCCCceecCCCCcchHHHHHhcCCeeEEECCCCcccccCCCceeeHHHHHHHHHHHHHHHHHHh
Confidence 99988865433444443347878888899999999884 554 6677888888877654
No 49
>PLN02693 IAA-amino acid hydrolase
Probab=99.95 E-value=1.8e-26 Score=215.29 Aligned_cols=222 Identities=17% Similarity=0.257 Sum_probs=158.4
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCC----CCcee----eeceeEEEEEE
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD----KQPCI----GTGGMIPWKLH 73 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~----~~i~~----~~~g~~~~~v~ 73 (290)
++|++.+..++++|.|+|++|||+ + .|++.++++|.+++ .|+++..+... +.+.. .++|..+++|+
T Consensus 149 ~~L~~~~~~~~g~V~~if~pdEE~-~---~Ga~~~i~~g~~~~--~~~iig~h~~p~~~~g~~~~~~g~~~~G~~~~~i~ 222 (437)
T PLN02693 149 KILQEHRHHLQGTVVLIFQPAEEG-L---SGAKKMREEGALKN--VEAIFGIHLSPRTPFGKAASRAGSFMAGAGVFEAV 222 (437)
T ss_pred HHHHhCcccCCceEEEEEEEcccc-h---hhHHHHHHCCCCCC--CCEEEEEecCCCCCCeeEEeccCcccccceEEEEE
Confidence 567777767889999999999994 4 69999999887653 24444433322 22221 25788999999
Q ss_pred EEecCCCCCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEE
Q 022886 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (290)
Q Consensus 74 v~G~~~Hs~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~ 153 (290)
++|+++|++.|+.|.|||..+++++.+|++...+..++. .+.+++++.|+ ||...|+||++|++++|+|+
T Consensus 223 v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~~~~~~~~~~~---------~~~ti~vg~i~-GG~~~NvVPd~a~~~~diR~ 292 (437)
T PLN02693 223 ITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPL---------DSKVVTVSKVN-GGNAFNVIPDSITIGGTLRA 292 (437)
T ss_pred EEcccccCCCCCCCcCHHHHHHHHHHHHHHHhcccCCCC---------CCcEEEEEEEE-cCCCCceECCeEEEEEEEec
Confidence 999999999999999999999999999988643322221 24788999999 99999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEec-CCCcc-ccCCCCHHHHHHHHHHHHHh
Q 022886 154 TPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE-ATNGV-ACNLDSRGFHVLCKATEEVV 231 (290)
Q Consensus 154 ~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~-~~~~d~~~~~~l~~a~~~~~ 231 (290)
.|+ .+++.++|++.++++.. .+++.+++++.. .+|++ .+.+|.++++.+++++++.+
T Consensus 293 ~~~--~~~i~~~i~~i~~~~a~-------------------~~g~~~e~~~~~~~~~~~~~~~nd~~l~~~~~~~~~~~~ 351 (437)
T PLN02693 293 FTG--FTQLQQRIKEIITKQAA-------------------VHRCNASVNLTPNGREPMPPTVNNMDLYKQFKKVVRDLL 351 (437)
T ss_pred CCH--HHHHHHHHHHHHHHHHH-------------------HhCCcEEEEEeecCccCCCCccCCHHHHHHHHHHHHHhc
Confidence 985 34566666666555332 113445555432 23332 24467789999999999988
Q ss_pred CCCCc---cccccCcchHHHHhhcCCcEE--EEcCC
Q 022886 232 GHVNP---YSITGTLPLIRELQDEGFDVQ--TAGYG 262 (290)
Q Consensus 232 g~~~~---~~~~gg~d~~~~~~~~g~~~v--~~Gpg 262 (290)
|.+.. ....|++|++. +.+ .+|.+ .+|++
T Consensus 352 G~~~~~~~~~~~gseDf~~-~~~-~vP~~~~~lG~~ 385 (437)
T PLN02693 352 GQEAFVEAAPEMGSEDFSY-FAE-TIPGHFSLLGMQ 385 (437)
T ss_pred CCcceeecCCCceechHHH-HHH-HhhhhEEEEecC
Confidence 86422 23457788655 443 56765 66776
No 50
>PRK05469 peptidase T; Provisional
Probab=99.94 E-value=1e-25 Score=209.23 Aligned_cols=236 Identities=15% Similarity=0.053 Sum_probs=170.0
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCC-CCCceeeeceeEEEEEEEEecCCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFH 80 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~-~~~i~~~~~g~~~~~v~v~G~~~H 80 (290)
++|++.+..++++|.|+|++|||+| .|++.++.++ ++.|+++..++. .+.+.++++|..+++|+++|+++|
T Consensus 153 ~~l~~~~~~~~g~v~~~f~~dEE~g----~Ga~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~g~~~~~i~v~Gk~~H 224 (408)
T PRK05469 153 EYLIAHPEIKHGDIRVAFTPDEEIG----RGADKFDVEK----FGADFAYTVDGGPLGELEYENFNAASAKITIHGVNVH 224 (408)
T ss_pred HHHHhCCCCCCCCEEEEEecccccC----CCHHHhhhhh----cCCcEEEEecCCCcceEEeccCceeEEEEEEeeecCC
Confidence 4666666667899999999999986 4888886433 234556555543 345777889999999999999999
Q ss_pred CC-CCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCCh
Q 022886 81 SG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (290)
Q Consensus 81 s~-~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~ 159 (290)
++ .|+.|.||+..++++++.|+......... ....+++++.++ || |++|++++++|+.|.++.
T Consensus 225 a~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~---------~~~~~i~~g~i~-gg------p~~~~i~~diR~~~~e~~ 288 (408)
T PRK05469 225 PGTAKGKMVNALLLAADFHAMLPADETPETTE---------GYEGFYHLTSIK-GT------VEEAELSYIIRDFDREGF 288 (408)
T ss_pred CCCCcccccCHHHHHHHHHHhCCCCCCCCCCC---------CceEEEEEEEEE-Ec------cceEEEEEEEecCCHHHH
Confidence 87 58999999999999999876542111000 012345666776 43 899999999999988888
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCc--cccCCCCHHHHHHHHHHHHHhCCC-Cc
Q 022886 160 TDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNG--VACNLDSRGFHVLCKATEEVVGHV-NP 236 (290)
Q Consensus 160 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~d~~~~~~l~~a~~~~~g~~-~~ 236 (290)
+++.++|++.++++.+... ++.+++++...+++ ..+++++++++.+++++++. |.+ ..
T Consensus 289 e~i~~~i~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~~a~~~~-g~~~~~ 349 (408)
T PRK05469 289 EARKALMQEIAKKVNAKYG------------------EGRVELEIKDQYYNMREKIEPHPHIVDLAKQAMEDL-GIEPII 349 (408)
T ss_pred HHHHHHHHHHHHHHHHHcC------------------CCeEEEEEeehhhhhhhhhcCCHHHHHHHHHHHHHc-CCCcEE
Confidence 8888888877777653211 23456655444432 34668899999999999985 753 33
Q ss_pred cccccCcchHHHHhhcCCcEEEEcCCCC-ccc---------cchHHHHHHHHHHH
Q 022886 237 YSITGTLPLIRELQDEGFDVQTAGYGMP-PLQ---------FTSFHSVYKTLIQK 281 (290)
Q Consensus 237 ~~~~gg~d~~~~~~~~g~~~v~~Gpg~~-~~~---------~~~~~~iy~~~~~~ 281 (290)
..+.|++|+ +++...|+|++.||||+. .|+ +...+++|.+++..
T Consensus 350 ~~~~ggtD~-~~~~~~giP~v~~gpG~~~~H~~~E~v~i~~l~~~~~~~~~~~~~ 403 (408)
T PRK05469 350 KPIRGGTDG-SQLSFMGLPCPNIFTGGHNFHGKFEFVSLESMEKAVEVIVEIAEL 403 (408)
T ss_pred ecCCCcccH-HHHhhCCCceEEECcCcccCcCcceeeEHHHHHHHHHHHHHHHHH
Confidence 456788885 556768999999999874 444 55677777777654
No 51
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.94 E-value=1.3e-25 Score=211.52 Aligned_cols=250 Identities=18% Similarity=0.176 Sum_probs=174.7
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCC-CCceeee----------------
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-KQPCIGT---------------- 64 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~-~~i~~~~---------------- 64 (290)
.+|++.+. .+++|.++|++|||.|+ .|++.+.. . .+++|++|++||+. +.+++++
T Consensus 125 ~~l~~~~~-~~~~i~~l~t~dEE~G~---~ga~~l~~-~---~~~~~~~i~~e~~~~g~l~~g~~G~~~~~~~~~~~r~~ 196 (485)
T PRK15026 125 AVLADENV-VHGPLEVLLTMTEEAGM---DGAFGLQS-N---WLQADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREA 196 (485)
T ss_pred HHHHhCCC-CCCCEEEEEEcccccCc---HhHHHhhh-c---cCCcCEEEEeCCCCCCeEEEeCCCcceEEEEEEEEEEe
Confidence 34555554 37899999999999998 89999965 2 23578999999974 5676655
Q ss_pred --ceeEEEEEEEEe-cCCCCC-CCCCCC-CHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccc
Q 022886 65 --GGMIPWKLHVTG-KLFHSG-LPHKAI-NPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGIN 139 (290)
Q Consensus 65 --~g~~~~~v~v~G-~~~Hs~-~p~~g~-NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n 139 (290)
+|..+++|+++| +++||+ .|+.|+ ||+..|+++|.++.. ..+++++.|+ ||...|
T Consensus 197 ~~~g~~~~~i~v~Gl~ggHsG~~i~~g~~nAi~~la~~l~~~~~-------------------~~~~~v~~i~-GG~~~N 256 (485)
T PRK15026 197 VPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAE-------------------ELDLRLIDFN-GGTLRN 256 (485)
T ss_pred cCCCceEEEEEEECCCCcCChHHHCCCCccHHHHHHHHHHHhHh-------------------hCCeEEEEEe-CCCccC
Confidence 466789999999 999999 699999 999999999987431 1356899999 999999
Q ss_pred eeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcc-----------c--c--cc-----------cCCCccc-----
Q 022886 140 QIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENI-----------E--K--LD-----------TRGPVSK----- 188 (290)
Q Consensus 140 ~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~-----------~--~--~~-----------~~~~~~~----- 188 (290)
+||++|.+.+++|.......+++.+.+.+.+++..+.. . . +. ...|.+.
T Consensus 257 aIp~~a~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Gv~~~s~ 336 (485)
T PRK15026 257 AIPREAFATIAVAADKVDALKSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRNSD 336 (485)
T ss_pred CCCCCcEEEEEEChhHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEEccccccccCHHHHHHHHHHHHHCCcccEEecc
Confidence 99999999999998632223333333333333111000 0 0 00 0000000
Q ss_pred -----------------------------cccCC-------------CCcceeEEEEEecCCCccccCCCCHHHHHHHHH
Q 022886 189 -----------------------------YVLPD-------------ENIRGSLTLTFDEATNGVACNLDSRGFHVLCKA 226 (290)
Q Consensus 189 -----------------------------~~~~~-------------~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a 226 (290)
+.... ..+ .++++....+|+|..++|+++++.++++
T Consensus 337 ~~~g~v~~S~Nlg~v~~~~~~~~i~~~~Rs~~~~~~~~i~~~i~~~~~~~--g~~~~~~~~~p~w~~~~ds~lv~~l~~~ 414 (485)
T PRK15026 337 VAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLA--GAKTEAKGAYPGWQPDANSPVMHLVRET 414 (485)
T ss_pred CCCCeEEeeeEEEEEEEeCCEEEEEEEecCCCchHHHHHHHHHHHHHHHc--CcEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence 00000 111 2456666789999999999999999999
Q ss_pred HHHHhCCC-CccccccCcchHHHHhh-cCCcEEEEcCCCC-ccc-----cchHHHHHHHHHHH
Q 022886 227 TEEVVGHV-NPYSITGTLPLIRELQD-EGFDVQTAGYGMP-PLQ-----FTSFHSVYKTLIQK 281 (290)
Q Consensus 227 ~~~~~g~~-~~~~~~gg~d~~~~~~~-~g~~~v~~Gpg~~-~~~-----~~~~~~iy~~~~~~ 281 (290)
|++.+|++ .+..++||+|++.+.+. .++|+|.|||... .|. ..+.++.|++++..
T Consensus 415 y~e~~G~~~~~~~ihaglEcG~~~~~~p~i~~VsfGP~~~~~HspdE~v~I~s~~~~~~~l~~ 477 (485)
T PRK15026 415 YQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGHYWTLLTE 477 (485)
T ss_pred HHHHHCCCCeEEEEEEEehHHHHHhhCCCCCEEEECCCCCCCCCCCcEEEhHHHHHHHHHHHH
Confidence 99999974 56778999997664444 6999999999655 344 23445666665444
No 52
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.94 E-value=5.6e-26 Score=210.89 Aligned_cols=237 Identities=14% Similarity=0.059 Sum_probs=166.3
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCCCceeeeceeEEEEEEEEecCCCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~v~v~G~~~Hs 81 (290)
++|++.+..++++|.|+|++|||.| .|++.+..++. +.++++++.++|++ .+.+..+|..+++|+++|+++|+
T Consensus 155 ~~L~e~~~~~~g~I~~~ft~dEE~g----~Ga~~l~~~~~--~~~~~~~i~gep~g-~i~~~~~g~~~~~I~v~Gk~aHa 227 (410)
T TIGR01882 155 DYLINHPEIKHGTIRVAFTPDEEIG----RGAHKFDVKDF--NADFAYTVDGGPLG-ELEYETFSAAAAKITIQGNNVHP 227 (410)
T ss_pred HHHHhCCCCCCCCEEEEEECcccCC----cCcchhhhhhc--CccEEEEeCCCCCC-eEEEccccceEEEEEEEEEecCc
Confidence 5666654346899999999999986 48888865432 22233445555544 45666679999999999999999
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChH
Q 022886 82 GLP-HKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (290)
Q Consensus 82 ~~p-~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~ 160 (290)
+.+ +.|.||+..+++++..+.... .+. .+.-+.+.++ +| ..|.+|++|++++|+|+.|.++.+
T Consensus 228 ~~~~~~g~nAi~~a~~~~~~l~~~~----~~~----------~t~~~~g~i~-~g-~i~giPd~a~l~~diR~~~~e~~e 291 (410)
T TIGR01882 228 GTAKGKMINAAQIAIDLHNLLPEDD----RPE----------YTEGREGFFH-LL-SIDGTVEEAKLHYIIRDFEKENFQ 291 (410)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCcC----CCc----------cccceeEEEE-EE-eEEEecCEEEEEEEEecCCHHHHH
Confidence 975 689999999999876554321 110 0111123455 44 467799999999999999988888
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCccccccCCCCcc-eeEEEEEecCCC--ccccCCCCHHHHHHHHHHHHHhCC-CCc
Q 022886 161 DVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIR-GSLTLTFDEATN--GVACNLDSRGFHVLCKATEEVVGH-VNP 236 (290)
Q Consensus 161 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p--~~~~~~d~~~~~~l~~a~~~~~g~-~~~ 236 (290)
++.+++++.++++.+.. + ..+++++...++ ++..++++++++.+++++++. |. +..
T Consensus 292 ~i~~~i~~i~~~~~~~~-------------------g~~~v~~~~~~~~~~~~~~~~~~~~lv~~~~~a~~~~-G~~~~~ 351 (410)
T TIGR01882 292 ERKELMKRIVEKMNNEY-------------------GQDRIKLDMNDQYYNMAEKIEKVMEIVDIAKQAMENL-GIEPKI 351 (410)
T ss_pred HHHHHHHHHHHHHHHHc-------------------CCceEEEEEEeeecChhhccCCCHHHHHHHHHHHHHh-CCCCcc
Confidence 88888888877754321 2 124455444444 456778999999999999974 64 434
Q ss_pred cccccCcchHHHHhhcCCcEEEEcCCCC-ccc---------cchHHHHHHHHHHHH
Q 022886 237 YSITGTLPLIRELQDEGFDVQTAGYGMP-PLQ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 237 ~~~~gg~d~~~~~~~~g~~~v~~Gpg~~-~~~---------~~~~~~iy~~~~~~~ 282 (290)
....|++| +++|...|+|++.||||+. .|. +.+.+++|.++++..
T Consensus 352 ~~~~ggtD-a~~~~~~Gip~~~~G~G~~~aHt~dE~v~i~~l~~~~~~~~~li~~~ 406 (410)
T TIGR01882 352 SPIRGGTD-GSQLSYMGLPTPNIFAGGENMHGRFEYISVDNMVKAVDVIVEIAKLN 406 (410)
T ss_pred cccceech-HHHHHhCCCCCCeEcCCcccCcCCceEEEHHHHHHHHHHHHHHHHHH
Confidence 44578888 4567778999999999874 454 667788888887543
No 53
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.94 E-value=2.1e-25 Score=210.25 Aligned_cols=246 Identities=17% Similarity=0.104 Sum_probs=169.3
Q ss_pred ChhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccc--cCCCCc---EEEecCCCC-----------------
Q 022886 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLN--KLKGGP---LYWIDTADK----------------- 58 (290)
Q Consensus 1 ~~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~--~~~~d~---~i~~e~~~~----------------- 58 (290)
++.|++.+..++++|.|+|++|||.|+ .|++++++..... ++.+|+ ++++|++..
T Consensus 130 l~~l~~~g~~~~~~i~l~~~~DEE~g~---~G~~~l~~~~~~~~~~~~~d~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~ 206 (466)
T PRK07318 130 LKIIKELGLPLSKKVRFIVGTDEESGW---KCMDYYFEHEEAPDFGFSPDAEFPIINGEKGITTFDLVHFEGENEGDYVL 206 (466)
T ss_pred HHHHHHcCCCCCccEEEEEEcccccCc---hhHHHHHHhCCCCCEEEEeCCCCcEEEEEeeeEEEEEEeccccCCCCcee
Confidence 356777888888999999999999998 8999999864211 111222 355554210
Q ss_pred -----------Cc------------------------eeeeceeE-----EEEEEEEecCCCCCCCCCCCCHHHHHHHHH
Q 022886 59 -----------QP------------------------CIGTGGMI-----PWKLHVTGKLFHSGLPHKAINPLELAMEAL 98 (290)
Q Consensus 59 -----------~i------------------------~~~~~g~~-----~~~v~v~G~~~Hs~~p~~g~NAi~~~~~~i 98 (290)
.+ ..++||.. |++|+++|+++|++.|+.|.|||..|+++|
T Consensus 207 ~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~kG~~~~~~~~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i 286 (466)
T PRK07318 207 VSFKSGLRENMVPDSAEAVITGDDLDDLIAAFEAFLAENGLKGELEEEGGKLVLTVIGKSAHGSTPEKGVNAATYLAKFL 286 (466)
T ss_pred EEEEcCccceecCcccEEEEecCCHHHHHHHHHHHHhhcCceEEEEecCCEEEEEEEeeEcccCCCccCccHHHHHHHHH
Confidence 00 01467755 799999999999999999999999999999
Q ss_pred HHHHhh------h---cCCCCC-C-----CcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHH
Q 022886 99 KVIQTR------F---YKDFPP-H-----PKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVM 163 (290)
Q Consensus 99 ~~l~~~------~---~~~~~~-~-----~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~ 163 (290)
.+|+.. + .+..+. . .........+..++|++.|+ +|... +|++.+|+|++|+.+.+++.
T Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~nvg~i~-gg~~~-----~~~~~iDiR~~p~~~~~~v~ 360 (466)
T PRK07318 287 NQLNLDGDAKAFLDFAAEYLHEDTRGEKLGIAYEDDVMGDLTMNVGVFS-FDEEK-----GGTLGLNFRYPVGTDFEKIK 360 (466)
T ss_pred HhccCchhHHHHHHHHHHhcCCCCCcccCCCcccCCCccCeEEEeeEEE-EecCc-----EEEEEEEEeCCCCCCHHHHH
Confidence 988631 0 000000 0 00000112234678999998 65321 69999999999999999998
Q ss_pred HHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCC-CccccccC
Q 022886 164 KRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSITGT 242 (290)
Q Consensus 164 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~-~~~~~~gg 242 (290)
++|++.+++. .+++++...+||+..+.++++++.+++++++.+|.+ .+..++|+
T Consensus 361 ~~i~~~~~~~-------------------------~~~~~~~~~~~p~~~~~d~~lv~~l~~a~~~~~g~~~~~~~~~gg 415 (466)
T PRK07318 361 AKLEKLIGVT-------------------------GVELSEHEHQKPHYVPKDDPLVKTLLKVYEKQTGLKGEEQVIGGG 415 (466)
T ss_pred HHHHHHHHhc-------------------------CeEEEEccCCCceeeCCCCHHHHHHHHHHHHHhCCCCCeeEEcch
Confidence 8888876541 245555556777767789999999999999988864 45567888
Q ss_pred cchHHHHhhcCCcEEEEcCCCC--ccc---------cchHHHHHHHHHHHH
Q 022886 243 LPLIRELQDEGFDVQTAGYGMP--PLQ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 243 ~d~~~~~~~~g~~~v~~Gpg~~--~~~---------~~~~~~iy~~~~~~~ 282 (290)
+| +++|.. ++|+..+|||+. +|+ +.+.+++|..++.+.
T Consensus 416 tD-a~~~~~-~i~~Gp~~pg~~~~aH~~dE~v~i~~l~~~~~v~~~~l~~~ 464 (466)
T PRK07318 416 TY-ARLLKR-GVAFGAMFPGSEDTMHQANEYIEIDDLIKAAAIYAEAIYEL 464 (466)
T ss_pred Hh-HhhCCC-eEEeCCCCCCCCCCCcCCCcceeHHHHHHHHHHHHHHHHHH
Confidence 88 666653 655444446643 454 566778888876653
No 54
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.93 E-value=1.7e-24 Score=200.49 Aligned_cols=244 Identities=11% Similarity=0.034 Sum_probs=172.2
Q ss_pred ChhcccccCCCceeEEEEEEecccCC-----CCCcccHHHHHHcc----c---cc-------------cC----------
Q 022886 1 MRKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDALVKDG----L---LN-------------KL---------- 45 (290)
Q Consensus 1 ~~~L~~~~~~~~~~i~~~~~~dEE~g-----~~~~~G~~~l~~~~----~---~~-------------~~---------- 45 (290)
++.|++.+.+++++|.+++..+||++ + .|++.+...- . .| ++
T Consensus 100 ~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~---~Gs~~~~g~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~ 176 (406)
T TIGR03176 100 VDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVF---WGSKNIFGLAKPEDVRTIEDAKGIKFVDAMHACGFDLRKAPTVRD 176 (406)
T ss_pred HHHHHHcCCCCCCCeEEEEeccccCccCCccc---ccHHHHhCCCCHHHHHhCcCCCCCCHHHHHHHcCCCccccccccc
Confidence 46789999999999999999999986 4 6777776210 0 00 00
Q ss_pred CCCcEEEecCCC----------CCceeeeceeEEEEEEEEecCCCCCCCCCC--CCHHHHHHHHHHHHHhhhcCCCCCCC
Q 022886 46 KGGPLYWIDTAD----------KQPCIGTGGMIPWKLHVTGKLFHSGLPHKA--INPLELAMEALKVIQTRFYKDFPPHP 113 (290)
Q Consensus 46 ~~d~~i~~e~~~----------~~i~~~~~g~~~~~v~v~G~~~Hs~~p~~g--~NAi~~~~~~i~~l~~~~~~~~~~~~ 113 (290)
+.++.+=.|-.. ..++.+++|..+++|+++|+++|+|.|+.+ .||+..+++++..+.+...+ ..
T Consensus 177 ~~~~~~elHieqG~~Le~~g~~igiv~~~~G~~~~~v~v~GkaaHag~~p~~~r~dAi~aaa~~i~~l~~~~~~-~~--- 252 (406)
T TIGR03176 177 DIKAFVELHIEQGCVLESEGQSIGVVNAIVGQRRYTVNLKGEANHAGTTPMSYRRDTVYAFSRICTQSIERAKE-IG--- 252 (406)
T ss_pred ccceEEEEEECCCcchHHCCCeEEEEeecccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-cC---
Confidence 111222222221 124568999999999999999999976543 89999999999998775321 11
Q ss_pred cccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCccccccCC
Q 022886 114 KEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPD 193 (290)
Q Consensus 114 ~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 193 (290)
.+.+++++.|+.+|...|+||++|++++|+|++|.++.+++.+++++.++++++.
T Consensus 253 --------~~~~~tvG~I~~gg~~~NvIP~~a~~~~DiR~~~~~~~e~v~~~i~~~i~~ia~~----------------- 307 (406)
T TIGR03176 253 --------DPLVLTFGKVEPVPNTVNVVPGETTFTIDCRHTDAAVLRNFTKELENDMKAIADE----------------- 307 (406)
T ss_pred --------CCcEEEEEEEEEcCCceEEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 1357899999856789999999999999999998888888888888888776542
Q ss_pred CCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCCCccccccCcchHHHHhhcCCcE-EEEcCC--CCccc---
Q 022886 194 ENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIRELQDEGFDV-QTAGYG--MPPLQ--- 267 (290)
Q Consensus 194 ~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~~~~~~~gg~d~~~~~~~~g~~~-v~~Gpg--~~~~~--- 267 (290)
++++++++.....++. +.|+++++.+++++++..+......++||+| +.+|... +|+ +.|||+ ...|+
T Consensus 308 --~g~~~ei~~~~~~~p~--~~d~~lv~~l~~a~~~~~~~~~~~~sggg~D-a~~~~~~-vP~~~ifgp~~~g~~H~p~E 381 (406)
T TIGR03176 308 --MDITIDIDLWMDEAPV--PMNKEIVAIIEQLAKAEKLNYRLMHSGAGHD-AQIFAPR-VPTAMIFVPSIGGISHNPAE 381 (406)
T ss_pred --cCCeEEEEEEecCCCC--CCCHHHHHHHHHHHHHcCCCceecCcccHHH-HHHHHHH-CCEEEEEEeCCCCCCCCccc
Confidence 2455565543333333 4578999999999998755544456778888 4556654 787 568986 33454
Q ss_pred ------cchHHHHHHHHHHHH
Q 022886 268 ------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 268 ------~~~~~~iy~~~~~~~ 282 (290)
+...+++|..++.+.
T Consensus 382 ~v~~e~l~~g~~vl~~~l~~l 402 (406)
T TIGR03176 382 RTNIEDLVEGVKTLADMLYEL 402 (406)
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 456677777766543
No 55
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.93 E-value=1.3e-24 Score=192.86 Aligned_cols=252 Identities=18% Similarity=0.202 Sum_probs=184.8
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecC--CCC---CceeeeceeEEEEEEEEe
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDT--ADK---QPCIGTGGMIPWKLHVTG 76 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~--~~~---~i~~~~~g~~~~~v~v~G 76 (290)
+.|+..|.+++++|.+.|++|||.++. .|++.+.+.-.+.++. -+.+..|+ +.. .+++++||..|++|++.|
T Consensus 142 r~L~~~g~kp~Rti~lsfvpDEEi~G~--~Gm~~fa~~~~~~~l~-~~filDEG~~se~d~~~vfyaEkg~w~~~v~~~G 218 (420)
T KOG2275|consen 142 RNLKASGFKPKRTIHLSFVPDEEIGGH--IGMKEFAKTEEFKKLN-LGFILDEGGATENDFATVFYAEKGPWWLKVTANG 218 (420)
T ss_pred HHHHhcCCCcCceEEEEecCchhccCc--chHHHHhhhhhhcccc-eeEEecCCCCCcccceeEEEEeeceeEEEEEecC
Confidence 567778999999999999999999874 8999998733233332 24556666 333 357899999999999999
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCC
Q 022886 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPF 156 (290)
Q Consensus 77 ~~~Hs~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~ 156 (290)
.++|||.|-. ..|+.++.++++++.+...+...-....+.+.....+|+|++.|+ ||...|++|+.+++.+|+|+.|.
T Consensus 219 ~~GHss~~~~-nTa~~~l~klv~~~~~fr~~q~~~l~~~p~~~~~~vtT~Nv~~i~-GGv~~N~~P~~~ea~~dirv~~~ 296 (420)
T KOG2275|consen 219 TPGHSSYPPP-NTAIEKLEKLVESLEEFREKQVDLLASGPKLALGDVTTINVGIIN-GGVQSNVLPETFEAAFDIRVRPH 296 (420)
T ss_pred CCCCCCCCCC-ccHHHHHHHHHHHHHHhHHHHHHHhhcCCceeccceeEEeeeeee-cccccCcCchhheeeeeeEeccC
Confidence 9999998522 468888888888887653211111111123344456899999999 99999999999999999999999
Q ss_pred CChHHHHHHHH-HHHHHHhhcccccccCCCccccccCCCCcceeEEEEEec----CCCcc-ccCCCCHHHHHHHHHHHHH
Q 022886 157 YNVTDVMKRLQ-EYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE----ATNGV-ACNLDSRGFHVLCKATEEV 230 (290)
Q Consensus 157 ~~~~~~~~~i~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~-~~~~d~~~~~~l~~a~~~~ 230 (290)
.|..++.+++. +..++. +...++++.. .+++. ..+.++|+..++..++++.
T Consensus 297 ~d~~~i~~~l~~~w~~~~-----------------------~eg~t~~f~~~~~~~~~~~t~~~~s~p~w~~~~~a~~~~ 353 (420)
T KOG2275|consen 297 VDVKAIRDQLEDEWAEEA-----------------------GEGVTLEFSQKVILDYPPVTPTDDSNPFWTAFAGALKDE 353 (420)
T ss_pred CCHHHHHHHHHHHhhhhc-----------------------CCceEEeccCcccCCCCCCCCCCCCChHHHHHHHHHHHh
Confidence 99988887774 333221 2223444332 23333 4566789999999999998
Q ss_pred hCCCCccccccCcchHHHHhhcCCcEEEEcCCCC------ccc-------cchHHHHHHHHHHHH
Q 022886 231 VGHVNPYSITGTLPLIRELQDEGFDVQTAGYGMP------PLQ-------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 231 ~g~~~~~~~~gg~d~~~~~~~~g~~~v~~Gpg~~------~~~-------~~~~~~iy~~~~~~~ 282 (290)
.++-.+....|+|| +|+++..|+|+..|-|... +|+ +.+.|++|+.++...
T Consensus 354 ~~k~~~~i~~gstd-sr~~rn~gvp~~~fsp~~nt~~~~H~hnE~l~~~~~l~gi~~~~~~i~~~ 417 (420)
T KOG2275|consen 354 GGKGYPEIGPGSTD-SRHIRNEGVPAIGFSPIINTPMLLHDHNEFLNEKVFLRGIEIYYTIIVNL 417 (420)
T ss_pred cCccceeecccccc-cchhhhcCcchhcccccccccceecchhhhhCchhhhhhhhHHHHHHHhh
Confidence 66655667788888 7888889999999998643 333 678899999977654
No 56
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.92 E-value=9.6e-24 Score=199.52 Aligned_cols=234 Identities=17% Similarity=0.177 Sum_probs=154.4
Q ss_pred cccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCC-CCce----------------ee--e
Q 022886 4 LGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-KQPC----------------IG--T 64 (290)
Q Consensus 4 L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~-~~i~----------------~~--~ 64 (290)
+++.+ .++++|.++|++|||+|+ .|++.+..... +.+++++.|+.. +.++ +. +
T Consensus 121 ~~~~~-~~~~~i~~~~~~dEE~g~---~Gs~~l~~~~~----~~~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~ 192 (477)
T TIGR01893 121 LEDNN-LKHPPLELLFTVDEETGM---DGALGLDENWL----SGKILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKFT 192 (477)
T ss_pred HhcCC-CCCCCEEEEEEeccccCc---hhhhhcChhhc----CCcEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEecC
Confidence 44433 356799999999999988 79999975432 234455544321 1111 11 4
Q ss_pred ceeEEEEEEEEe-cCCCCC-CCCCCC-CHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCcccee
Q 022886 65 GGMIPWKLHVTG-KLFHSG-LPHKAI-NPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQI 141 (290)
Q Consensus 65 ~g~~~~~v~v~G-~~~Hs~-~p~~g~-NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~v 141 (290)
+|..+++|+++| +++||| .|+.++ ||+..++++|..+.... .++++.+. ||...|+|
T Consensus 193 kG~~~~~i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~i~~l~~~~-------------------~~~v~~~~-gg~~~N~i 252 (477)
T TIGR01893 193 KNEEGYQISLKGLKGGHSGADIHKGRANANKLMARVLNELKENL-------------------NFRLSDIK-GGSKRNAI 252 (477)
T ss_pred CCceEEEEEEeCcCCCcCccccCCCCcCHHHHHHHHHHhhhhcC-------------------CeEEEEEe-CCCccccc
Confidence 789999999999 999997 588885 99999999998886531 13577787 88899999
Q ss_pred CCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhc-------------------------------------ccccccCC
Q 022886 142 PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN-------------------------------------IEKLDTRG 184 (290)
Q Consensus 142 P~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~-------------------------------------~~~~~~~~ 184 (290)
|++|++.+|+|.......++..+++.+.+++..+. +-.+....
T Consensus 253 p~~~~~~~diR~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~~~~~g~~~~~~~~ 332 (477)
T TIGR01893 253 PREAKALIAIDENDVKLLENLVKNFQSKFKSEYSELEPNITIEVSKRENSVKVFSENTTDKLINALNGLPNGVQSVSDEE 332 (477)
T ss_pred CCceEEEEEEChhHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEECCCcccccCHHHHHHHHHHHHHCCccceeeccCC
Confidence 99999999988764333333333333333322210 00011111
Q ss_pred C-----------------------ccccccCCCC------------cceeEEEEEecCCCccccCCCCHHHHHHHHHHHH
Q 022886 185 P-----------------------VSKYVLPDEN------------IRGSLTLTFDEATNGVACNLDSRGFHVLCKATEE 229 (290)
Q Consensus 185 ~-----------------------~~~~~~~~~~------------~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~ 229 (290)
| +.|+. +... -...++++....+|++.+++|+|+++.+.+++++
T Consensus 333 ~~~~~~t~n~g~i~~~~~~~~~~i~~R~~-~~~~~~~i~~~i~~~~~~~~~~v~~~~~~~p~~~~~d~plv~~l~~a~~~ 411 (477)
T TIGR01893 333 PGLVESSLNLGVVKTKENKVIFTFLIRSS-VESDKDYVTEKIESIAKLAGARVEVSAGYPSWQPDPQSNLLDTARKVYSE 411 (477)
T ss_pred CCeEEeeeeEEEEEEcCCEEEEEEEeCCC-CchhHHHHHHHHHHHhhhcCeEEEEecCCCcccCCCCCHHHHHHHHHHHH
Confidence 1 00110 0000 0113455655678999999999999999999999
Q ss_pred HhCCCC-ccccccCcchHHHHhh--cCCcEEEEcCCCC-ccc
Q 022886 230 VVGHVN-PYSITGTLPLIRELQD--EGFDVQTAGYGMP-PLQ 267 (290)
Q Consensus 230 ~~g~~~-~~~~~gg~d~~~~~~~--~g~~~v~~Gpg~~-~~~ 267 (290)
.+|.++ ...++||+| +++|.. .++|++.|||+.. .|+
T Consensus 412 ~~g~~~~~~~~~Ggtd-~~~~~~~~~~i~~v~~Gp~~~~~H~ 452 (477)
T TIGR01893 412 MFGEDPEVKVIHAGLE-CGIISSKIPDIDMISIGPNIYDPHS 452 (477)
T ss_pred HHCCCCeEEEeecCcc-HHHHHhhCCCceEEEeCCCCCCCCC
Confidence 998754 456788888 566765 3899999999774 444
No 57
>PRK06156 hypothetical protein; Provisional
Probab=99.92 E-value=2.5e-23 Score=198.42 Aligned_cols=246 Identities=14% Similarity=0.142 Sum_probs=167.9
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccC--CCCc---EEEecCCCC----------------Cc
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKL--KGGP---LYWIDTADK----------------QP 60 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~--~~d~---~i~~e~~~~----------------~i 60 (290)
++|++.+.+++++|.|+|++|||.|+ .|++++++.+...++ .+|. ++++|++.. ++
T Consensus 167 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~G~~~~~~~~~~~~~~~~~D~~~~~~~~E~~~~~~~i~~~~~~~~~~~~~l 243 (520)
T PRK06156 167 KAIKDSGLPLARRIELLVYTTEETDG---DPLKYYLERYTPPDYNITLDAEYPVVTAEKGWGTIMATFPKRAADGKGAEI 243 (520)
T ss_pred HHHHHcCCCCCceEEEEEecccccCc---hhHHHHHHhcCCCCeEEeeCCCCceEEEecceEEEEEEecCcCCCCCceeE
Confidence 46777787888999999999999998 899999976532211 0111 345555310 00
Q ss_pred ---------------------------------------eeeeceeE---------EEEEEEEecCCCCCCCCCCCCHHH
Q 022886 61 ---------------------------------------CIGTGGMI---------PWKLHVTGKLFHSGLPHKAINPLE 92 (290)
Q Consensus 61 ---------------------------------------~~~~~g~~---------~~~v~v~G~~~Hs~~p~~g~NAi~ 92 (290)
..+++|.. |++|+++|+++|+|.|+.|.|||.
T Consensus 244 ~~~~gG~~~n~ip~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~I~v~Gk~aHsS~P~~G~NAI~ 323 (520)
T PRK06156 244 VAMTGGAFANQIPQTAVATLSGGDPAALAAALQAAAAAQVKRHGGGFSIDFKRDGKDVTITVTGKSAHSSTPESGVNPVT 323 (520)
T ss_pred EEEEcCCcCCCCCCccEEEEecCCHHHHHHHHHHHHHHHHhhcccCceEEEEEcCCeEEEEEEeEECCCCCCCCCccHHH
Confidence 11233554 899999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCC------------CCC-CCc-----ccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEEC
Q 022886 93 LAMEALKVIQTRFYKD------------FPP-HPK-----EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLT 154 (290)
Q Consensus 93 ~~~~~i~~l~~~~~~~------------~~~-~~~-----~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~ 154 (290)
.+++++..|++.+... ... ... .....+.++.+++++.|. +|. +.|++++|+|++
T Consensus 324 ~aa~ii~~L~~~l~~~~~~~~~~~i~~~~~~~~~g~~~g~~~~~~~~g~~t~~~~~I~-gg~------~~~~l~iDiR~~ 396 (520)
T PRK06156 324 RLALFLQSLDGDLPHNHAADAARYINDLVGLDYLGEKFGVAYKDDFMGPLTLSPTVVG-QDD------KGTEVTVNLRRP 396 (520)
T ss_pred HHHHHHHhccccccchhHHHHHHHHHHhhCCCCccCcCCccccCCCccCcEEeeeEEE-EeC------CeEEEEEEeeCC
Confidence 9999999987521100 000 000 000112233456677776 443 589999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCC-
Q 022886 155 PFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGH- 233 (290)
Q Consensus 155 p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~- 233 (290)
|+++.+++.++|++.+.+.... ++.++++.. ...+|+..++++++++.+++++++.+|.
T Consensus 397 p~~~~eev~~~I~~~i~~~~~~-------------------~gv~ve~~~-~~~~p~~~~~d~~lv~~l~~a~~~~~G~~ 456 (520)
T PRK06156 397 VGKTPELLKGEIADALAAWQAK-------------------HQVALDIDY-YWGEPMVRDPKGPWLKTLLDVFGHFTGLD 456 (520)
T ss_pred CCCCHHHHHHHHHHHHHHHHhh-------------------cCceEEEee-cCCCceeeCCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999988875321 133344432 2345566778999999999999999886
Q ss_pred CCccccccCcchHHHHhhcCCcEEEEcCCCC-----ccc---------cchHHHHHHHHHHHH
Q 022886 234 VNPYSITGTLPLIRELQDEGFDVQTAGYGMP-----PLQ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 234 ~~~~~~~gg~d~~~~~~~~g~~~v~~Gpg~~-----~~~---------~~~~~~iy~~~~~~~ 282 (290)
+.+..++|++| ++++. +++.|||+.+ +|+ +...+++|.+++.+.
T Consensus 457 ~~~~~~~ggTD-a~~~~----~~v~fGP~~~g~~~~aHt~dE~V~ie~l~~~~~i~~~~l~~l 514 (520)
T PRK06156 457 AKPVAIAGSTN-AKLFP----NAVSFGPAMPGVKYTGHTENEFKTVEQFMLDLQMYTEMLIRI 514 (520)
T ss_pred CceeeecChhh-hhhCC----ccEEEcCCCCCCCCCCcCcccCCCHHHHHHHHHHHHHHHHHH
Confidence 45667788888 56553 5899999421 344 556778888877664
No 58
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.92 E-value=3.4e-23 Score=199.78 Aligned_cols=243 Identities=16% Similarity=0.117 Sum_probs=172.2
Q ss_pred ChhcccccCCCceeEEEEEEecccCC-----CCCcccHHHH--------HHcccccc-----------C-----------
Q 022886 1 MRKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDAL--------VKDGLLNK-----------L----------- 45 (290)
Q Consensus 1 ~~~L~~~~~~~~~~i~~~~~~dEE~g-----~~~~~G~~~l--------~~~~~~~~-----------~----------- 45 (290)
++.|++.+..++++|.|++.++||++ + .|++.+ ++....++ +
T Consensus 282 ~~~l~~~~~~~~~~i~vv~~~~EEg~rF~~~~---~GS~~~~G~~~~~~~~~~d~~g~~~~~al~~~g~~~~~~~~~~~~ 358 (591)
T PRK13590 282 VRELHRQGRRLPFGLEVVGFAEEEGQRYKATF---LGSGALIGDFDPAWLDQKDADGITMREAMQHAGLCIDDIPKLRRD 358 (591)
T ss_pred HHHHHHcCCCCCCCeEEEEecCCccccCCccc---cchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccC
Confidence 46788999999999999999999974 4 577753 22100011 1
Q ss_pred --CCCcEEE--ecCC--------CCCceeeeceeEEEEEEEEecCCCCCC-CCC-CCCHHHHHHHHHHHHHhhhcCCCCC
Q 022886 46 --KGGPLYW--IDTA--------DKQPCIGTGGMIPWKLHVTGKLFHSGL-PHK-AINPLELAMEALKVIQTRFYKDFPP 111 (290)
Q Consensus 46 --~~d~~i~--~e~~--------~~~i~~~~~g~~~~~v~v~G~~~Hs~~-p~~-g~NAi~~~~~~i~~l~~~~~~~~~~ 111 (290)
+.++.+= .|+. ...++.+++|..+++|+++|+++|+|. |.. +.||+..+++++..+++.... .
T Consensus 359 ~~~~~a~~ElHiEqg~~Le~~~~~~gvV~~~~G~~~~~v~v~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~~~--~- 435 (591)
T PRK13590 359 PARYLGFVEVHIEQGPVLNELDLPLGIVTSINGSVRYVGEMIGMASHAGTTPMDRRRDAAAAVAELALYVEQRAAQ--D- 435 (591)
T ss_pred CCCccEEEEEEeCCCHHHHHCCCceEEEeeeeccEEEEEEEEeECCCCCCCCchhcccHHHHHHHHHHHHHHHHhc--C-
Confidence 0111121 2433 234678999999999999999999996 543 689999999999999875321 1
Q ss_pred CCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCcccccc
Q 022886 112 HPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVL 191 (290)
Q Consensus 112 ~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 191 (290)
...+++++.|+.+|+..|+||++|++++|+|+.+.++.+++.+.+++.++++++.
T Consensus 436 ----------~~~v~tVG~i~~~Gg~~NVIP~~a~~~iDiR~~~~e~~e~v~~~i~~~i~~ia~~--------------- 490 (591)
T PRK13590 436 ----------GDSVGTVGMLEVPGGSINVVPGRCRFSLDIRAPTDAQRDAMVADVLAELEAICER--------------- 490 (591)
T ss_pred ----------CCcEEEEEEEEECCCCCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 1235688888744678999999999999999998888888877788887776542
Q ss_pred CCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCC-CccccccCcchHHHHhhcCCcEEEEcCCCC---ccc
Q 022886 192 PDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSITGTLPLIRELQDEGFDVQTAGYGMP---PLQ 267 (290)
Q Consensus 192 ~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~-~~~~~~gg~d~~~~~~~~g~~~v~~Gpg~~---~~~ 267 (290)
+++.++++.....|+. ++|+++++.+.+++++ .|.+ ....++||+|. .+|...+.+++.||||.. .|+
T Consensus 491 ----~g~~vei~~~~~~~~~--~~d~~lv~~~~~aa~~-~G~~~~~~~sggg~Da-~~~a~~~p~~mifgpg~~~g~sH~ 562 (591)
T PRK13590 491 ----RGLRYTLEETMRAAAA--PSAPAWQQRWEAAVAA-LGLPLFRMPSGAGHDA-MKLHEIMPQAMLFVRGENAGISHN 562 (591)
T ss_pred ----cCCeEEEEEeecCCCc--CCCHHHHHHHHHHHHH-cCCCcccCCcchhHHH-HHHHHHCCEEEEEEeeCCCCCCCC
Confidence 2455666654445553 5788899999999987 4753 34567788884 557666777888998742 455
Q ss_pred ---------cchHHHHHHHHHHHH
Q 022886 268 ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 268 ---------~~~~~~iy~~~~~~~ 282 (290)
+...+++|.+++.+.
T Consensus 563 p~E~v~~edL~~g~~vl~~ll~~l 586 (591)
T PRK13590 563 PLESSTADDMQLAVQAFQHLLDQL 586 (591)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHH
Confidence 456677777776543
No 59
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.91 E-value=4.8e-23 Score=198.57 Aligned_cols=244 Identities=16% Similarity=0.136 Sum_probs=172.0
Q ss_pred ChhcccccCCCceeEEEEEEecccC-----CCCCcccHHHHH--------H----ccc-----cc--cC-----------
Q 022886 1 MRKLGETKLKLKSTVIAVFIASEEN-----SAITGVGVDALV--------K----DGL-----LN--KL----------- 45 (290)
Q Consensus 1 ~~~L~~~~~~~~~~i~~~~~~dEE~-----g~~~~~G~~~l~--------~----~~~-----~~--~~----------- 45 (290)
++.|++.+.+++++|.|+..++||+ ++ .|++.+. + +|. ++ ++
T Consensus 282 ~~~l~~~~~~~~~~i~vi~~~~EEg~rF~~~~---~GS~~~~G~~~~~~~~~~d~~G~~~~~~l~~~g~~~~~~~~~~~~ 358 (591)
T PRK13799 282 VKELHEQGERLPFHFEVIAFAEEEGQRFKATF---LGSGALIGDFNMELLDIKDADGISLREAIQHAGHCIDAIPKIARD 358 (591)
T ss_pred HHHHHHcCCCCCCCeEEEEecCCCccCCCccc---cchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccC
Confidence 3678999999999999999999998 44 6777776 1 121 00 01
Q ss_pred --CCCcEEEecCCCC----------CceeeeceeEEEEEEEEecCCCCCC-C-CCCCCHHHHHHHHHHHHHhhhcCCCCC
Q 022886 46 --KGGPLYWIDTADK----------QPCIGTGGMIPWKLHVTGKLFHSGL-P-HKAINPLELAMEALKVIQTRFYKDFPP 111 (290)
Q Consensus 46 --~~d~~i~~e~~~~----------~i~~~~~g~~~~~v~v~G~~~Hs~~-p-~~g~NAi~~~~~~i~~l~~~~~~~~~~ 111 (290)
+.++.+=.|-..+ .++.+++|..+++|+++|+++|+|. | +.+.||+..+++++..+++...+. +
T Consensus 359 ~~~~~a~~ElHIEQgp~Le~~~~~igvV~g~~G~~~~~Itv~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~~--~ 436 (591)
T PRK13799 359 PADVLGFIEVHIEQGPVLLELDIPLGIVTSIAGSARYICEFIGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQD--Q 436 (591)
T ss_pred CCCccEEEEEEeCCCHHHHHCCCcEEEEeeeccceEEEEEEEEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHhc--C
Confidence 0111111221222 2567899999999999999999996 5 357899999999999998764321 1
Q ss_pred CCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCcccccc
Q 022886 112 HPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVL 191 (290)
Q Consensus 112 ~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 191 (290)
. ...+++++.|+.+++..|+||++|++.+|+|.+|+++.+.+.+++++.++++++..
T Consensus 437 ~---------~~~v~tVG~I~~~~ga~NvIP~~a~~~~DiR~~~~e~~e~l~~~i~~~i~~ia~~~-------------- 493 (591)
T PRK13799 437 H---------ASLVATMGQLNVPSGSTNVIPGRCQFSLDIRAATDEIRDAAVADILAEIAAIAARR-------------- 493 (591)
T ss_pred C---------CCcEEEEEEEEecCCCCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 1 12467888998445689999999999999999988777877777888877765432
Q ss_pred CCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCC-CccccccCcchHHHHhhcCCcEEEEcCC-C--Cccc
Q 022886 192 PDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSITGTLPLIRELQDEGFDVQTAGYG-M--PPLQ 267 (290)
Q Consensus 192 ~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~-~~~~~~gg~d~~~~~~~~g~~~v~~Gpg-~--~~~~ 267 (290)
+..+++++....|+. .+|+++++.+++++++ .|.+ ....++||+| +.+|.+.+.+++.|||+ + ..|+
T Consensus 494 -----g~~~ei~~~~~~~~~--~~d~~lv~~~~~a~~~-~G~~~~~~~sgag~D-a~~~a~~~p~amif~~~g~~g~sHs 564 (591)
T PRK13799 494 -----GIEYKAELAMKAAAA--PCAPELMKQLEAATDA-AGVPLFELASGAGHD-AMKIAEIMDQAMLFTRCGNAGISHN 564 (591)
T ss_pred -----CCeEEEEEEecCCCc--CCCHHHHHHHHHHHHH-cCCCceecCcchHHH-HHHHHhhCCEEEEEEecCCCCCCCC
Confidence 345666655555553 4678899999998876 4753 3456778888 55677778888888763 3 3455
Q ss_pred ---------cchHHHHHHHHHHH
Q 022886 268 ---------FTSFHSVYKTLIQK 281 (290)
Q Consensus 268 ---------~~~~~~iy~~~~~~ 281 (290)
+...+++|.+++.+
T Consensus 565 p~E~v~~edL~~g~~vl~~~l~~ 587 (591)
T PRK13799 565 PLESMTADDMELSADAFLDFLNN 587 (591)
T ss_pred ccccCCHHHHHHHHHHHHHHHHH
Confidence 44556677666554
No 60
>PRK08554 peptidase; Reviewed
Probab=99.91 E-value=7.3e-23 Score=191.23 Aligned_cols=248 Identities=17% Similarity=0.128 Sum_probs=160.1
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCCCCceeeeceeEEEEEEE-------
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHV------- 74 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~v~v------- 74 (290)
++|++. .++++|.|+|++|||+|+ .+..+++++.......+|++|++||+...+++.+++..++++++
T Consensus 116 ~~l~~~--~~~~~i~l~~~~dEE~g~---~~~~~~~~~~~~~~~~~~~~iv~Ept~~~~~~~~~kg~~~~~~~~~~~~~~ 190 (438)
T PRK08554 116 KELSKE--PLNGKVIFAFTGDEEIGG---AMAMHIAEKLREEGKLPKYMINADGIGMKPIIRRRKGFGVTIRVPSEKVKV 190 (438)
T ss_pred HHHHhc--CCCCCEEEEEEcccccCc---cccHHHHHHHHhcCCCCCEEEEeCCCCCcchhhcCCceEEEEEeccccccc
Confidence 445543 367899999999999987 55557766432223457999999999877665444444555553
Q ss_pred Ee-------------c-CCCCCCCCCCCC--HHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEec-CC--
Q 022886 75 TG-------------K-LFHSGLPHKAIN--PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSY-PG-- 135 (290)
Q Consensus 75 ~G-------------~-~~Hs~~p~~g~N--Ai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~-gg-- 135 (290)
+| . .+|++.+..|.| |+..+++++.++...... +.... .... ..+..++++.... +|
T Consensus 191 ~g~~~~~~~~~~~~~~~~~Ha~~~~~g~~~~~i~~~~~~~~~~~~~~~~-~~g~~--~~~~-~~~~~~~~~~~~p~~g~n 266 (438)
T PRK08554 191 KGKLREQTFEIRTPVVETRHAAYFLPGVDTHPLIAASHFLRESNVLAVS-LEGKF--LKGN-VVPGEVTLTYLEPGEGEE 266 (438)
T ss_pred ccceeeeeeceeecccCccccccccCCcCchHHHHHHHHHhhcCceEEE-Eeeee--eecC-cccceeEEEEecCCCCcc
Confidence 34 4 499997766654 588888877765432100 00000 0000 0011111111110 11
Q ss_pred ---------------------------------Ccccee---CCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccc
Q 022886 136 ---------------------------------GGINQI---PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEK 179 (290)
Q Consensus 136 ---------------------------------~~~n~v---P~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~ 179 (290)
...|++ |++|++.+|+|+.| .+.+++.+++++.+++...
T Consensus 267 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~n~~~i~~g~a~~~~DiR~~~-~~~e~v~~~i~~~~~~~~~---- 341 (438)
T PRK08554 267 VEVDLGLTRLLKAIVPLVRAPIKAEKYSDYGVSITPNVYSFAEGKHVLKLDIRAMS-YSKEDIERTLKEVLEFNLP---- 341 (438)
T ss_pred ccccccHHHHHHHHHHHHHHhhccccccccceeeccceEEecCCeEEEEEEEEecC-CCHHHHHHHHHHHhhccCC----
Confidence 134555 99999999999987 6778787777777654211
Q ss_pred cccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCC-CCccccccCcchHHHHhhcCCcEEE
Q 022886 180 LDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGH-VNPYSITGTLPLIRELQDEGFDVQT 258 (290)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~-~~~~~~~gg~d~~~~~~~~g~~~v~ 258 (290)
+.+++++.....|+..+++++++++.+++++++ .|. +.+..++|+|| +++|...|+|++.
T Consensus 342 -----------------~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~~~~-~g~~~~~~~~~GgtD-a~~~~~~Gip~v~ 402 (438)
T PRK08554 342 -----------------EAEVEIRTNEKAGYLFTPPDEEIVKVALRVLKE-LGEDAEPVEGPGASD-SRYFTPYGVKAID 402 (438)
T ss_pred -----------------CceEEEEeccCCCCcCCCCChHHHHHHHHHHHH-hCCCcEEEecCCchH-HHHHHhcCCCceE
Confidence 344566554455777788899999999999988 575 45667788887 7878888999999
Q ss_pred EcCCC-Cccc---------cchHHHHHHHHHHHH
Q 022886 259 AGYGM-PPLQ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 259 ~Gpg~-~~~~---------~~~~~~iy~~~~~~~ 282 (290)
|||+. ..|+ +.+..++|.+++.++
T Consensus 403 ~Gp~~~~~H~~~E~v~i~~l~~~~~i~~~~i~~l 436 (438)
T PRK08554 403 FGPKGGNIHGPNEYVEIDSLKKMPEVYKRIALRL 436 (438)
T ss_pred ECCCCCCCCCCcceEEHHHHHHHHHHHHHHHHHH
Confidence 99954 3554 567778888877543
No 61
>PRK07205 hypothetical protein; Provisional
Probab=99.91 E-value=3.3e-22 Score=187.61 Aligned_cols=241 Identities=15% Similarity=0.117 Sum_probs=161.8
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccc--cCCCC--------------cEEEecCCCCC------
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLN--KLKGG--------------PLYWIDTADKQ------ 59 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~--~~~~d--------------~~i~~e~~~~~------ 59 (290)
++|++.+..++++|.|+|++|||+++ .|++++++..... .+.+| ++++++|++..
T Consensus 129 ~~l~~~~~~~~~~i~l~~~~dEE~g~---~g~~~~~~~~~~~~~~~~~~~~~~v~~~ekG~~~~~i~~~~~~~~~~~~g~ 205 (444)
T PRK07205 129 KALLDAGVQFNKRIRFIFGTDEETLW---RCMNRYNEVEEQATMGFAPDSSFPLTYAEKGLLQAKLVGPGSDQLELEVGQ 205 (444)
T ss_pred HHHHHcCCCCCCcEEEEEECCcccCc---ccHHHHHhCCCCCCeeECCCCCCceEEEEeceEEEEEEeCCccceEEecCC
Confidence 56778888889999999999999998 7999988742111 12233 24555665320
Q ss_pred -----ceee-ec--------------e----eEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHhh-----hcCCCC
Q 022886 60 -----PCIG-TG--------------G----MIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTR-----FYKDFP 110 (290)
Q Consensus 60 -----i~~~-~~--------------g----~~~~~v~v~G~~~Hs~~p~~g~NAi~~~~~~i~~l~~~-----~~~~~~ 110 (290)
+... ++ | ..+.+++++|+++|||.|+.|.||+..+++++..++.. +.+.+.
T Consensus 206 ~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~~~~~~v~v~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~ 285 (444)
T PRK07205 206 AFNVVPAKASYQGPKLEAVKKELDKLGFEYVVKENEVTVLGKSVHAKDAPQGINAVIRLAKALVVLEPHPALDFLANVIG 285 (444)
T ss_pred cccccCceeEEEecCHHHHHHHHHhcCceEeecCcEEEEEeEEcccCCCccCcCHHHHHHHHHHhccHHHHHHHHHHhcC
Confidence 1111 22 2 13449999999999999999999999999999887542 111110
Q ss_pred CC-Cc-----ccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCC
Q 022886 111 PH-PK-----EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRG 184 (290)
Q Consensus 111 ~~-~~-----~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 184 (290)
.. .. ..........++|++. .|+||++|++.+|+|++|+.+.+++.+.+++.+++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~t~nvg~-------~nvvP~~a~~~ld~R~~p~~~~e~v~~~i~~~~~~~----------- 347 (444)
T PRK07205 286 EDATGLNIFGDIEDEPSGKLSFNIAG-------LTITKEKSEIRIDIRIPVLADKEKLVQQLSQKAQEY----------- 347 (444)
T ss_pred CCCccccCCccccCCCcCCceEEeEE-------EEEECCEEEEEEEEeCCCCCCHHHHHHHHHHHHHHc-----------
Confidence 00 00 0000011224445443 479999999999999999999999999988876541
Q ss_pred CccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCC-CccccccCcchHHHHhhcCCcEEEEc---
Q 022886 185 PVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSITGTLPLIRELQDEGFDVQTAG--- 260 (290)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~-~~~~~~gg~d~~~~~~~~g~~~v~~G--- 260 (290)
.+++.....++|+..+.++++++.+++++++.+|.+ ....++|++| ++. ..|++.||
T Consensus 348 --------------~v~~~~~~~~~p~~~~~~~~lv~~l~~~~~~~~g~~~~~~~~gg~~~-~~~----~~~~i~~G~~~ 408 (444)
T PRK07205 348 --------------GLTYEEFDYLAPLYVPLDSELVSTLMSVYQEKTGDDSPAQSSGGATF-ART----MPNCVAFGALF 408 (444)
T ss_pred --------------CcEEEEecCCCceeeCCCcHHHHHHHHHHHHHhCCCCceEEeccHHH-HHh----CCCcEEECCcc
Confidence 123333345688888899999999999999988864 3445666654 332 35788999
Q ss_pred CCCC--ccc---------cchHHHHHHHHHHHH
Q 022886 261 YGMP--PLQ---------FTSFHSVYKTLIQKT 282 (290)
Q Consensus 261 pg~~--~~~---------~~~~~~iy~~~~~~~ 282 (290)
||+. .|+ +.+.+++|..++.+.
T Consensus 409 Pg~~~~aH~~nE~v~i~~l~~~~~~l~~~l~~l 441 (444)
T PRK07205 409 PGAPQTEHQANEHIVLEDLYRAMDIYAEAIYRL 441 (444)
T ss_pred CCCCCCCcCcccCccHHHHHHHHHHHHHHHHHH
Confidence 8743 454 556677888877654
No 62
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=99.90 E-value=1.5e-22 Score=189.45 Aligned_cols=220 Identities=16% Similarity=0.095 Sum_probs=150.9
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccc--cCCCCc---EEEec----------------------
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLN--KLKGGP---LYWID---------------------- 54 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~--~~~~d~---~i~~e---------------------- 54 (290)
+.|++.+.+++++|.|+|++|||.|+ .|++++++..... .+.+|+ ++++|
T Consensus 119 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~~~~~~~~~d~~~~~~~~e~g~~~~~~~v~g~~~~~~~i~~ 195 (447)
T TIGR01887 119 KILKELGLKLKKKIRFIFGTDEETGW---ACIDYYFEHEEAPDIGFTPDAEFPIIYGEKGIVTLEISFKDDTEGDVVLES 195 (447)
T ss_pred HHHHHcCCCCCCcEEEEEECCcccCc---HhHHHHHHhcCCCCEEEeCCCCcceEEEecCeEEEEEEeccCCCCceeEEE
Confidence 56777888889999999999999998 7999998763221 122333 44444
Q ss_pred -----CCCCC-----ceeeec-------------------eeE-----EEEEEEEecCCCCCCCCCCCCHHHHHHHHHHH
Q 022886 55 -----TADKQ-----PCIGTG-------------------GMI-----PWKLHVTGKLFHSGLPHKAINPLELAMEALKV 100 (290)
Q Consensus 55 -----~~~~~-----i~~~~~-------------------g~~-----~~~v~v~G~~~Hs~~p~~g~NAi~~~~~~i~~ 100 (290)
|++.. .+++++ |.. +++|+++|+++|||.|+.|.||+..|++++..
T Consensus 196 ~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~ 275 (447)
T TIGR01887 196 FKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFIAKELEGSFEVNDGTATITLEGKSAHGSAPEKGINAATYLALFLAQ 275 (447)
T ss_pred EeCCCcCCccCcceEEEEeccchhHHHHHHHHHhhhcCcceEEEecCCEEEEEEEeeecccCCCccCccHHHHHHHHHHh
Confidence 33332 245555 777 79999999999999999999999999999998
Q ss_pred HH--hhhcC-------CCC-----C-CCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHH
Q 022886 101 IQ--TRFYK-------DFP-----P-HPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKR 165 (290)
Q Consensus 101 l~--~~~~~-------~~~-----~-~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~ 165 (290)
+. +...+ ... . ..........+..++|++.|+ +| +|++|++.+|+|++|+++.++++++
T Consensus 276 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~nvg~I~-~g-----~p~~~~~~~d~R~~p~~~~e~~~~~ 349 (447)
T TIGR01887 276 LNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDVSGDLTMNVGVID-YE-----NAEAGLIGLNVRYPVGNDPDTMLKN 349 (447)
T ss_pred ccCchhHHHHHHHHHHhcCCCCccccCCCcccCCCcCCcEEEEEEEE-Ee-----CCcEEEEEEEEecCCCCCHHHHHHH
Confidence 75 21000 000 0 000000011235678999898 65 4899999999999999999987777
Q ss_pred HHHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCC-CccccccCcc
Q 022886 166 LQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSITGTLP 244 (290)
Q Consensus 166 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~-~~~~~~gg~d 244 (290)
+.+.+.. . .++......+|+..++++++++.+++++++.+|.+ .+..+.|++|
T Consensus 350 i~~~~~~-------------------------~-~~~~~~~~~~p~~~~~~~~lv~~l~~~~~~~~g~~~~~~~~~ggtd 403 (447)
T TIGR01887 350 ELAKESG-------------------------I-VEVTENGYLKPLYVPKDDPLVQTLMKVYEKQTGDEGTPVAIGGGTY 403 (447)
T ss_pred HHHHhhC-------------------------c-EEEEEccCCCCeEECCCCHHHHHHHHHHHHHhCCCCCeeEecchhh
Confidence 7643321 0 12222223455556889999999999999998864 4556777776
Q ss_pred hHHHHhhcCCcEEEEcC
Q 022886 245 LIRELQDEGFDVQTAGY 261 (290)
Q Consensus 245 ~~~~~~~~g~~~v~~Gp 261 (290)
++++. +++.|||
T Consensus 404 -a~~~~----~~i~~Gp 415 (447)
T TIGR01887 404 -ARLME----NGVAFGA 415 (447)
T ss_pred -hhhCC----CcEEeCC
Confidence 55443 4688995
No 63
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.87 E-value=4.3e-20 Score=162.95 Aligned_cols=241 Identities=21% Similarity=0.338 Sum_probs=181.3
Q ss_pred ChhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHcc---ccccCCCCcEEEecCC---CCCce--eeeceeEEEEE
Q 022886 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDG---LLNKLKGGPLYWIDTA---DKQPC--IGTGGMIPWKL 72 (290)
Q Consensus 1 ~~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~---~~~~~~~d~~i~~e~~---~~~i~--~~~~g~~~~~v 72 (290)
++++++.|..++.||.|+|.++||+|+ .|...++++. ++.+ .|++++.+.. ..++| +|.||.+.|.+
T Consensus 144 v~a~~~~g~~lpvnv~f~~EgmEEsgS---~~L~~l~~~~kD~~~~~--vD~vciSdnyWlg~kkPcltyGlRG~~yf~i 218 (473)
T KOG2276|consen 144 VKALQQLGIDLPVNVVFVFEGMEESGS---EGLDELIEKEKDKFFKD--VDFVCISDNYWLGTKKPCLTYGLRGVIYFQI 218 (473)
T ss_pred HHHHHHhCccccceEEEEEEechhccC---ccHHHHHHHHhhhhhcc--CCEEEeeCceeccCCCcccccccccceeEEE
Confidence 468899999999999999999999999 7889988753 3333 5788888873 33566 58899999999
Q ss_pred EEEe--cCCCCCCC-CCCCCHHHHHHHHHHHHHhh--------hcCCCCCCCcc-----ccc----------------Cc
Q 022886 73 HVTG--KLFHSGLP-HKAINPLELAMEALKVIQTR--------FYKDFPPHPKE-----QVY----------------GF 120 (290)
Q Consensus 73 ~v~G--~~~Hs~~p-~~g~NAi~~~~~~i~~l~~~--------~~~~~~~~~~~-----~~~----------------~~ 120 (290)
.|.| +..|||.. ..-.-|+..|+.++..|.+. +.+.+.+.+.+ +++ .+
T Consensus 219 ~v~g~~~DlHSGvfGG~~hE~m~dL~~~ms~Lv~~~~~Ilipgiy~~vaplteeE~~~y~~I~f~~~e~~~~tg~~~l~~ 298 (473)
T KOG2276|consen 219 EVEGPSKDLHSGVFGGVVHEAMNDLVLVMSSLVDIQGRILIPGIYEDVAPLTEEEDSIYDDIDFDVEEFKEATGSQMLPT 298 (473)
T ss_pred EEeecccccccccccchhHHHHHHHHHHHHHhcCcCCcEeccchhhhccCCChHHHhhhhcceeeHhhhhcccccccccc
Confidence 9999 66899964 22245666666666666542 11222222210 001 11
Q ss_pred C---------C-CCceeeeEEe---cCCCccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHHHhhcccccccCCCcc
Q 022886 121 E---------T-PSTMKPTQWS---YPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVS 187 (290)
Q Consensus 121 ~---------~-~~~i~~~~i~---~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 187 (290)
. + .+++.+..|+ .+.++..+||.+...+|.+|+.|.++++.+.+.+.+++++..++.. .
T Consensus 299 ~~k~~~l~~rWryPSLsihgIeGaFs~pG~kTVIP~kVigkfSiRlVP~md~e~verlv~~yl~~~f~~~n-----S--- 370 (473)
T KOG2276|consen 299 DDKKRILMHRWRYPSLSIHGIEGAFSGPGAKTVIPAKVVGKFSIRLVPNMDPEQVERLVTRYLEKVFAELN-----S--- 370 (473)
T ss_pred CchHHHhhhhcccCccceecccceeeCCCceEEeehhheeeeEEEecCCCCHHHHHHHHHHHHHHHHHhcC-----C---
Confidence 1 0 1233444444 2778899999999999999999999999999999999998776532 1
Q ss_pred ccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCCCcccccc-CcchHHHHhh-cCCcEEEEcCCC
Q 022886 188 KYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITG-TLPLIRELQD-EGFDVQTAGYGM 263 (290)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~~~~~~~g-g~d~~~~~~~-~g~~~v~~Gpg~ 263 (290)
..++++.+.....+|..+++++.+.++++|++.++|.++++++.| +.++++.|++ .|.|++.++.|.
T Consensus 371 ---------~N~l~~~~~~~~~~Wv~d~~~~~y~a~krA~~~v~gvePd~~ReGgSIPvt~tfQ~~~~~~V~llP~G~ 439 (473)
T KOG2276|consen 371 ---------PNKLKVSMGHAGAPWVSDPDDPHYLALKRAIETVYGVEPDFTREGGSIPVTLTFQDITGKSVLLLPYGA 439 (473)
T ss_pred ---------CCceEEeecCCCCceecCCCchhHHHHHHHHHHhhCCCCCccccCCccceehHHHHHhCCCeEEecccc
Confidence 357888888888999999999999999999999999988888877 5688888988 499998877663
No 64
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=99.75 E-value=5.7e-18 Score=128.59 Aligned_cols=109 Identities=27% Similarity=0.375 Sum_probs=92.2
Q ss_pred eeeceeEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCcccee
Q 022886 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQI 141 (290)
Q Consensus 62 ~~~~g~~~~~v~v~G~~~Hs~~p~~g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~v 141 (290)
++++|..+++++++|+++|+|.|+.|.||+..+++++++|++...+.... ....+.++.+++++.++ +|...|+|
T Consensus 1 ~g~~G~~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~~~~~----~~~~~~~~~~~~~~~i~-gG~~~n~i 75 (111)
T PF07687_consen 1 IGHRGVIWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFEWAFR----PEEFFPGPPTLNIGSIE-GGTAPNVI 75 (111)
T ss_dssp EEEEEEEEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCHBTST----HHHCTCTSEEEEEEEEE-EESSTTEE
T ss_pred CcCCCEEEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcccccc----cccccccccceeEeecc-cCCcCCEE
Confidence 57899999999999999999999999999999999999998863221100 01122346889999999 99999999
Q ss_pred CCceEEEEEEEECCCCChHHHHHHHHHHHHHHhh
Q 022886 142 PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175 (290)
Q Consensus 142 P~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~~~~ 175 (290)
|++|++++++|++|+++.+++.+.+++.+++..+
T Consensus 76 p~~a~~~~~~R~~p~~~~~~i~~~i~~~~~~~~~ 109 (111)
T PF07687_consen 76 PDEATLTVDIRYPPGEDLEEIKAEIEAAVEKIAK 109 (111)
T ss_dssp SSEEEEEEEEEESTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCcchHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999988653
No 65
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=99.61 E-value=6.7e-15 Score=134.46 Aligned_cols=235 Identities=15% Similarity=0.076 Sum_probs=173.1
Q ss_pred CCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCC-CCCceeeeceeEEEEEEEEecCCCCCC-CCC
Q 022886 9 LKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFHSGL-PHK 86 (290)
Q Consensus 9 ~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~-~~~i~~~~~g~~~~~v~v~G~~~Hs~~-p~~ 86 (290)
..++++|++.|++|||.|+ +|++.+.-. .+.+|+.+..++. -+.+.+...+...+++++.|+.+|++. +..
T Consensus 165 ~i~h~~i~~g~s~~Ee~g~---rg~~~~~~a----~f~a~~ay~iDGg~~g~i~~ea~~~~~~~~~~~g~~~h~~~a~~~ 237 (414)
T COG2195 165 EIPHGGIRGGFSPDEEIGG---RGAANKDVA----RFLADFAYTLDGGPVGEIPREAFNAAAVRATIVGPNVHPGSAKGK 237 (414)
T ss_pred cccccCeEEEecchHHhhh---hhhhhccHH----hhhcceeEecCCCccCeeeeeccchheeeeeeeccCcCccchHHH
Confidence 4678999999999999998 888887543 4556788888854 467788899999999999999999974 788
Q ss_pred CCCHHHHHHHHHHHHHhhhcCCCCCCCcccccCcCCCCceeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHHH
Q 022886 87 AINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166 (290)
Q Consensus 87 g~NAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i 166 (290)
..||+..+.+++..+... ..+. .++...|..+ .+...|.|.+++.....+|.......+.....+
T Consensus 238 ~i~a~~~a~e~~~~~~~~---~~~e-----------~t~~~~Gv~~-~~~~~~~V~~~s~~~~~iR~~d~~~~~s~~~~~ 302 (414)
T COG2195 238 MINALLLAAEFILELPLE---EVPE-----------LTEGPEGVYH-LGDSTNSVEETSLNLAIIRDFDNLLFRARKDSM 302 (414)
T ss_pred HhhHHHhhhhhhhcCCcc---cccc-----------cccccceEEe-ccccccchhhhhhhhhhhhhcchhHHHHhHHHH
Confidence 899999999888765432 1111 1334567777 888999999999999999998655555566666
Q ss_pred HHHHHHHhhcccccccCCCccccccCCCCcceeEEEEEecCCCccccCCCCHHHHHHHHHHHHHhCCCCccccccCcchH
Q 022886 167 QEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLI 246 (290)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~~~~l~~a~~~~~g~~~~~~~~gg~d~~ 246 (290)
++.+.+..++.. . ...++++....||+|...++++++..++++++++.+++....+.||+|++
T Consensus 303 ~~~~~~~~~~~g---------------~--~~~~~~~~~~~Yp~~~~~~~~~iv~~a~~a~~~l~~~p~v~~i~gGtd~~ 365 (414)
T COG2195 303 KDVVEEMAASLG---------------K--LAGAELEVKDSYPGWKIKPDSPLVDLAKKAYKELGIKPKVKPIHGGTDGG 365 (414)
T ss_pred HHHHHHHHHHhh---------------h--ccceEEEEeccccCcCCCCCchHHHHHHHHHHHhCCCceEEEeecccchh
Confidence 666666555432 0 14578888889999999999999999999999997777677889999976
Q ss_pred HHHhhcCCc--EEEEcCCCCccc-----cchHHHHHHHHHHHHH
Q 022886 247 RELQDEGFD--VQTAGYGMPPLQ-----FTSFHSVYKTLIQKTW 283 (290)
Q Consensus 247 ~~~~~~g~~--~v~~Gpg~~~~~-----~~~~~~iy~~~~~~~~ 283 (290)
. +...|.| .+..|||...|. ..+..+-+++++.+..
T Consensus 366 ~-is~~g~p~~~i~~Gp~~n~Hs~~E~v~I~s~ek~~~~l~~l~ 408 (414)
T COG2195 366 V-LSFKGLPTPNISTGPGENPHSPDEFVSIESMEKAVQVLVELL 408 (414)
T ss_pred h-hhccCCCCceEecccccCCCCccceeehHHHHHHHHHHHHHH
Confidence 4 6666655 555566555565 2333444444444443
No 66
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.78 E-value=1.1e-08 Score=84.65 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=45.3
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcc-cHHHHHHccccccCCCCcEEEecCCCCCc
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGV-GVDALVKDGLLNKLKGGPLYWIDTADKQP 60 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~-G~~~l~~~~~~~~~~~d~~i~~e~~~~~i 60 (290)
+.|++.+..++++|.|+|+++||+++ . |++.+++++....+++|+++++|++....
T Consensus 49 ~~l~~~~~~~~~~i~~~~~~~EE~g~---~~g~~~l~~~~~~~~~~~~~~~~~e~~~~~~ 105 (189)
T PF01546_consen 49 KALKESGDDLPGNIIFLFTPDEEIGS---IGGAKHLLEEGAFFGLHPDYVIIGEPTGKGG 105 (189)
T ss_dssp HHHHHTTTTCSSEEEEEEESTCCGTS---TTHHHHHHHHCEEEEEEESEEEECECETTSE
T ss_pred HHHHhccccccccccccccccccCCC---cchhhhhhhhccccccccccccccccccccc
Confidence 55666788999999999999999998 5 99999998533344578888888876654
No 67
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=98.35 E-value=1.7e-06 Score=78.45 Aligned_cols=153 Identities=17% Similarity=0.193 Sum_probs=106.3
Q ss_pred CCCceeEEEEEEecccCCCCCcccHHHHHHc--cccc--cCCCCcEEEecCCC-------CC-ceeeeceeEEEEEEEEe
Q 022886 9 LKLKSTVIAVFIASEENSAITGVGVDALVKD--GLLN--KLKGGPLYWIDTAD-------KQ-PCIGTGGMIPWKLHVTG 76 (290)
Q Consensus 9 ~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~--~~~~--~~~~d~~i~~e~~~-------~~-i~~~~~g~~~~~v~v~G 76 (290)
...+|||.|+.++|||.-+ .|++..+.. +..+ +++.-++|+.|++. ++ ++.|..|.+-.-.-|.|
T Consensus 159 ~~~~GNlLf~a~pdEE~~s---~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ryvYtGtiGKLLp~f~vvG 235 (553)
T COG4187 159 TDRQGNLLFMAVPDEEVES---RGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRYVYTGTIGKLLPFFFVVG 235 (553)
T ss_pred CCCCCcEEEEeccchhhhc---ccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceEEEeccchhhcceeEEEe
Confidence 4689999999999999998 899988763 2212 34444677777642 22 56799999999999999
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhh--hcCCCCCCCcccccCcCCC-CceeeeEEecCCCccce-eCCceEEEEEEE
Q 022886 77 KLFHSGLPHKAINPLELAMEALKVIQTR--FYKDFPPHPKEQVYGFETP-STMKPTQWSYPGGGINQ-IPGECTVSGDVR 152 (290)
Q Consensus 77 ~~~Hs~~p~~g~NAi~~~~~~i~~l~~~--~~~~~~~~~~~~~~~~~~~-~~i~~~~i~~gg~~~n~-vP~~a~~~~~iR 152 (290)
+..|+|+|-.|.||...++++++.|+.- +.+..+. .+.+| +.+....++ .+.|| .|.++.+.|++=
T Consensus 236 ~etHvG~~f~Gvnan~maSei~~~le~N~~l~dr~~G-------e~t~PPs~L~qkDlK---e~Y~VqTp~~a~~~fN~l 305 (553)
T COG4187 236 CETHVGYPFEGVNANFMASEITRRLELNADLADRVDG-------EITPPPSCLEQKDLK---ESYNVQTPERAWLYFNWL 305 (553)
T ss_pred eccccCCcccCCCHHHHHHHHHHHhhcChhhhhhhCC-------eeCCCcHhhhhhhhh---hhccccCcchhhhhheeh
Confidence 9999999999999999999999988632 1221111 11222 222222333 44555 688899999985
Q ss_pred ECCCCChHHHHHHHHHHHHHHhh
Q 022886 153 LTPFYNVTDVMKRLQEYVDDINE 175 (290)
Q Consensus 153 ~~p~~~~~~~~~~i~~~l~~~~~ 175 (290)
+- +.+..++.+.+++..++.++
T Consensus 306 ~h-~~ta~~~~d~l~~~a~~A~~ 327 (553)
T COG4187 306 YH-SRTAKELFDRLKEEAETAAE 327 (553)
T ss_pred hh-cCCHHHHHHHHHHHHHHHHH
Confidence 43 67778888777776655443
No 68
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=92.13 E-value=0.053 Score=44.19 Aligned_cols=52 Identities=27% Similarity=0.247 Sum_probs=37.3
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA 56 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~ 56 (290)
|.|++.+.+++++|+|+|..+||.|. .|++++++......-+..++|+.|.-
T Consensus 39 r~l~~~~~~~~~~i~fv~~~~EE~gl---~GS~~~~~~~~~~~~~~~~~inlD~~ 90 (179)
T PF04389_consen 39 RVLKELKPQPKRTIRFVFFDGEEQGL---LGSRAFVEHDHEELDNIAAVINLDMI 90 (179)
T ss_dssp HHHHHSTHSSSEEEEEEEESSGGGTS---HHHHHHHHHHHCHHHHEEEEEEECSS
T ss_pred HHHHHhhcccCccEEEEEecccccCc---cchHHHHHhhhcccccceeEEecccc
Confidence 55677667788999999999999998 89999997321111123466777753
No 69
>PRK09961 exoaminopeptidase; Provisional
Probab=91.30 E-value=0.51 Score=42.99 Aligned_cols=64 Identities=13% Similarity=-0.010 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcc--ccccCcchHHHHhh--cCCcEEEEcCCCC-ccc---------cchHHHHHHHHHH
Q 022886 215 LDSRGFHVLCKATEEVVGHVNPY--SITGTLPLIRELQD--EGFDVQTAGYGMP-PLQ---------FTSFHSVYKTLIQ 280 (290)
Q Consensus 215 ~d~~~~~~l~~a~~~~~g~~~~~--~~~gg~d~~~~~~~--~g~~~v~~Gpg~~-~~~---------~~~~~~iy~~~~~ 280 (290)
.|..+.+.+++++++. +.+..+ ..+||||.+. ++. .|+|++.+||+.. .|. +..++++|..++.
T Consensus 254 ~~~~l~~~l~~~A~~~-~Ip~Q~~~~~ggGTDa~~-~~~~~~Giptv~ig~p~ry~Hs~~E~v~~~D~~~~~~Ll~~~i~ 331 (344)
T PRK09961 254 APPKLTAWIETVAAEI-GIPLQADMFSNGGTDGGA-VHLTGTGVPTVVMGPATRHGHCAASIADCRDILQMIQLLSALIQ 331 (344)
T ss_pred CCHHHHHHHHHHHHHc-CCCcEEEecCCCcchHHH-HHHhCCCCCEEEechhhhcccChhheEEHHHHHHHHHHHHHHHH
Confidence 5778899999999986 554333 3456788544 443 7999999999864 344 5566777766653
No 70
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=87.94 E-value=0.57 Score=42.75 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=33.5
Q ss_pred CCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCC
Q 022886 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD 57 (290)
Q Consensus 10 ~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~ 57 (290)
+++.+|.++|++-||.|. +|++.... .++||.+|..|.+.
T Consensus 197 ~~~~~l~~~~tvqEEvG~---rGA~~aa~-----~i~pD~aI~vDv~~ 236 (350)
T TIGR03107 197 ELPNTLIAGANVQEEVGL---RGAHVSTT-----KFNPDIFFAVDCSP 236 (350)
T ss_pred CCCceEEEEEEChhhcCc---hhhhhHHh-----hCCCCEEEEEecCC
Confidence 477899999999999998 89997643 45789999999764
No 71
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=87.87 E-value=0.44 Score=43.23 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=27.3
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHc
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKD 39 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~ 39 (290)
+.|++. .++.+|.|+++++||.|. .|+++++++
T Consensus 156 r~l~~~--~~~~~I~fv~~~~EE~Gl---~GS~~~~~~ 188 (346)
T PRK10199 156 ERLKNV--PTEYGIRFVATSGEEEGK---LGAENLLKR 188 (346)
T ss_pred HHHhhC--CCCCcEEEEEECCcccCc---HHHHHHHHh
Confidence 345543 467899999999999998 899999986
No 72
>PRK09864 putative peptidase; Provisional
Probab=87.51 E-value=0.57 Score=42.79 Aligned_cols=46 Identities=22% Similarity=0.128 Sum_probs=36.1
Q ss_pred hcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCCC
Q 022886 3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD 57 (290)
Q Consensus 3 ~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~~ 57 (290)
.|++... ++.++.++|++-||.|. +|++.... .++||.+|..|.+.
T Consensus 186 ~l~~l~~-~~~~vy~v~TvQEEvGl---rGA~~aa~-----~i~PDiaIavDvt~ 231 (356)
T PRK09864 186 LLQTVNN-PEITLYGVGSVEEEVGL---RGAQTSAE-----HIKPDVVIVLDTAV 231 (356)
T ss_pred HHHHhhc-CCCeEEEEEEcchhcch---HHHHHHHh-----cCCCCEEEEEeccc
Confidence 3444432 78999999999999998 89998854 45789999998763
No 73
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=86.98 E-value=0.5 Score=42.01 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=31.0
Q ss_pred CCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCC
Q 022886 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA 56 (290)
Q Consensus 10 ~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~ 56 (290)
.++.+|.|+|++-||.|. .|++.+..+ ++||.+|..|.+
T Consensus 153 ~~~~~v~~v~tvqEEvG~---rGA~~aa~~-----i~PD~ai~vD~~ 191 (292)
T PF05343_consen 153 ELDVDVYFVFTVQEEVGL---RGAKTAAFR-----IKPDIAIAVDVT 191 (292)
T ss_dssp S-SSEEEEEEESSCTTTS---HHHHHHHHH-----H-CSEEEEEEEE
T ss_pred CCCceEEEEEEeeeeecC---cceeecccc-----cCCCEEEEEeee
Confidence 356999999999999998 899988653 468899987754
No 74
>PRK09961 exoaminopeptidase; Provisional
Probab=86.84 E-value=0.8 Score=41.73 Aligned_cols=39 Identities=26% Similarity=0.200 Sum_probs=33.1
Q ss_pred CCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCC
Q 022886 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA 56 (290)
Q Consensus 10 ~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~ 56 (290)
+++.+|.++|++.||.|. .|++.... .++||++|..|.+
T Consensus 185 ~~~~~v~~~~tvqEEvG~---rGa~~aa~-----~i~pd~~I~vDv~ 223 (344)
T PRK09961 185 ELPAEVWLVASSSEEVGL---RGGQTATR-----AVSPDVAIVLDTA 223 (344)
T ss_pred CCCceEEEEEEcccccch---HHHHHHHh-----ccCCCEEEEEecc
Confidence 468999999999999998 89988854 3578999999876
No 75
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=83.77 E-value=0.92 Score=41.33 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=34.5
Q ss_pred cCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCC
Q 022886 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA 56 (290)
Q Consensus 8 ~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~ 56 (290)
+.+++.++.|+|++-||.|. +|++.... .++||.+|..+.+
T Consensus 197 ~~~~~~~vy~v~tvqEEVGl---rGA~~~a~-----~i~pd~aiavd~~ 237 (355)
T COG1363 197 GIELPADVYFVASVQEEVGL---RGAKTSAF-----RIKPDIAIAVDVT 237 (355)
T ss_pred cCCCCceEEEEEecchhhcc---chhhcccc-----ccCCCEEEEEecc
Confidence 56899999999999999998 88887753 4678999988875
No 76
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=79.45 E-value=1.1 Score=40.81 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=21.8
Q ss_pred hhcccccCCCceeEEEEEEecccCCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSA 27 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~ 27 (290)
+.|++.+.+++.+|.++|+++||.|+
T Consensus 196 ~~l~~~~~~~~~~v~~~~t~qEEvG~ 221 (343)
T TIGR03106 196 KAIVEHKVPLPVDVHPLFTITEEVGS 221 (343)
T ss_pred HHHHhcCCCCCceEEEEEECCcccCc
Confidence 55666666788999999999999995
No 77
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=66.06 E-value=15 Score=33.51 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCC-ccccccCcchHH-HHhhcCCcEEEEcCCCC-ccc
Q 022886 215 LDSRGFHVLCKATEEVVGHVN-PYSITGTLPLIR-ELQDEGFDVQTAGYGMP-PLQ 267 (290)
Q Consensus 215 ~d~~~~~~l~~a~~~~~g~~~-~~~~~gg~d~~~-~~~~~g~~~v~~Gpg~~-~~~ 267 (290)
.+..+.+.+.+++++. +.+. ...++||||... .+...|+|++.+|.+.. .|.
T Consensus 263 ~~~~l~~~l~~~A~~~-~I~~Q~~~~~gGtDa~~~~~~~~Gvpt~~i~ip~Ry~Hs 317 (350)
T TIGR03107 263 MLPRMKDFLLTTAEEA-GIKYQYYVAKGGTDAGAAHLKNSGVPSTTIGVCARYIHS 317 (350)
T ss_pred CCHHHHHHHHHHHHHc-CCCcEEecCCCCchHHHHHHhCCCCcEEEEccCcccccC
Confidence 4566788888888885 6543 334557888443 23347999999997543 443
No 78
>PHA02448 hypothetical protein
Probab=63.34 E-value=26 Score=26.94 Aligned_cols=74 Identities=16% Similarity=0.134 Sum_probs=45.8
Q ss_pred cCCCceeEEEEEEecccCCCCCcccHHHHHHccccccCCCCcEEEecCC----CCCceeeeceeEEEEEEEEecCC--CC
Q 022886 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA----DKQPCIGTGGMIPWKLHVTGKLF--HS 81 (290)
Q Consensus 8 ~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~~~~~~~d~~i~~e~~----~~~i~~~~~g~~~~~v~v~G~~~--Hs 81 (290)
|..+++.|.+=|..--|..+ .++ +.|-.-..||- ++-+...+.|..|+++++.|..- .+
T Consensus 22 gklpkggi~ld~~gh~~lt~-------r~l--------~~dplwtwep~a~~~~glp~~d~~gglwirlt~~g~tr~gyg 86 (192)
T PHA02448 22 GKLPKGGITLDFLGHGYLTA-------RFL--------DVDPLWTWEPFAVGDNGLPLLDEHGGLWIRLTLCGVTRIGYG 86 (192)
T ss_pred ccCCCCceeEEecchhhhhh-------hhc--------ccCccccccccccCCCCCcccccCCCeEEEEEEeccceeecc
Confidence 34456666666664433322 121 23445566662 45567789999999999999543 22
Q ss_pred -CCCCCCCCHHHHHHH
Q 022886 82 -GLPHKAINPLELAME 96 (290)
Q Consensus 82 -~~p~~g~NAi~~~~~ 96 (290)
+....|+||+..++-
T Consensus 87 d~~gk~gpnavkeaig 102 (192)
T PHA02448 87 DAGGKKGPNAVKEAIG 102 (192)
T ss_pred ccCCCcCchHHHHHHH
Confidence 245678999987653
No 79
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=56.01 E-value=14 Score=34.64 Aligned_cols=64 Identities=14% Similarity=0.048 Sum_probs=32.6
Q ss_pred EEEEEecCCCccccCCCCHHHHHHHH-HHHHHhCCCCccccccCcchHHHHhhcCCcEEEEcC-CCCccc
Q 022886 200 LTLTFDEATNGVACNLDSRGFHVLCK-ATEEVVGHVNPYSITGTLPLIRELQDEGFDVQTAGY-GMPPLQ 267 (290)
Q Consensus 200 ~~~~~~~~~p~~~~~~d~~~~~~l~~-a~~~~~g~~~~~~~~gg~d~~~~~~~~g~~~v~~Gp-g~~~~~ 267 (290)
.++.+....|+.. |..+.+.-.. -+..+.-..+-+.+..+.+... .+.+.+|++.+|| |-..|+
T Consensus 455 ~t~~~~~~FpglS---D~S~l~l~~s~~i~a~t~N~P~~~r~~~~P~~~-i~~L~iP~iN~Gp~GkD~Hk 520 (553)
T COG4187 455 ETLIEKPFFPGLS---DMSFLGLADSQEIDAVTSNTPGWNRLYDRPSEK-IQALNIPTINLGPWGKDFHK 520 (553)
T ss_pred ceeEEeeccCccc---ccccccccccccccchhcCCcchhhccCCCccc-cccccCceeecccccCcHHH
Confidence 4566666677653 4444443321 1222211112233334444222 4567899999999 555666
No 80
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=55.75 E-value=9.7 Score=35.61 Aligned_cols=35 Identities=34% Similarity=0.289 Sum_probs=29.1
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccc
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGL 41 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~ 41 (290)
+.|++.. ++.+|.|++...||.|. .|+++++.+..
T Consensus 241 r~l~~~~--p~~~v~f~~~~aEE~Gl---~GS~~~~~~~~ 275 (435)
T COG2234 241 RVLKGNP--PKRTVRFVAFGAEESGL---LGSEAYVKRLS 275 (435)
T ss_pred HHHhcCC--CCceEEEEEecchhhcc---cccHHHHhcCC
Confidence 4555553 88999999999999998 89999998754
No 81
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=50.60 E-value=29 Score=33.23 Aligned_cols=33 Identities=9% Similarity=-0.110 Sum_probs=27.0
Q ss_pred eeCCceEEEEEEEECCCCChHHHHHHHHHHHHH
Q 022886 140 QIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDD 172 (290)
Q Consensus 140 ~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~ 172 (290)
.--+.+.+.+++|++++.+.+++.++++...+.
T Consensus 353 ~~~~~~~i~~~~Rs~~~~~~~~i~~~i~~~~~~ 385 (485)
T PRK15026 353 MTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKL 385 (485)
T ss_pred EeCCEEEEEEEecCCCchHHHHHHHHHHHHHHH
Confidence 556789999999999988888888888776443
No 82
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=44.98 E-value=58 Score=29.84 Aligned_cols=48 Identities=13% Similarity=-0.043 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHhCCCC--ccccccCcchHHHHhh-cCCcEEEEcCCCC
Q 022886 216 DSRGFHVLCKATEEVVGHVN--PYSITGTLPLIRELQD-EGFDVQTAGYGMP 264 (290)
Q Consensus 216 d~~~~~~l~~a~~~~~g~~~--~~~~~gg~d~~~~~~~-~g~~~v~~Gpg~~ 264 (290)
+..+.+.+.+++++. +.+. .....||||.+.+... .|+|+..+|++-.
T Consensus 268 ~~~l~~~L~~~A~~~-~Ip~Q~~v~~~ggTDA~a~~~~g~gvpta~Igip~r 318 (355)
T COG1363 268 HPKLRKFLLELAEKN-NIPYQVDVSPGGGTDAGAAHLTGGGVPTALIGIPTR 318 (355)
T ss_pred CHHHHHHHHHHHHHc-CCCeEEEecCCCCccHHHHHHcCCCCceEEEecccc
Confidence 455778888888886 6542 2233478886554333 6899999998654
No 83
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=43.75 E-value=14 Score=37.34 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=37.7
Q ss_pred hhcccccCCCceeEEEEEEecccCCCCCcccHHHHHHccc-cccCCCCcEEEecCC
Q 022886 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGL-LNKLKGGPLYWIDTA 56 (290)
Q Consensus 2 ~~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~~-~~~~~~d~~i~~e~~ 56 (290)
|.+.+....+.++|+|+|..+||.+. .|+..++.++. .+.+ .++|+.|.+
T Consensus 176 Rv~s~~~~~l~~~vVFLfNgaEE~~L---~gsH~FItQH~w~~~~--ka~INLea~ 226 (834)
T KOG2194|consen 176 RVLSKSDKLLTHSVVFLFNGAEESGL---LGSHAFITQHPWSKNI--KAVINLEAA 226 (834)
T ss_pred HHhhcCCCcccccEEEEecCcccchh---hhcccceecChhhhhh--heEEecccc
Confidence 45566666789999999999999998 89999988543 3344 367777764
No 84
>PRK09864 putative peptidase; Provisional
Probab=40.13 E-value=91 Score=28.58 Aligned_cols=64 Identities=9% Similarity=0.012 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcc--ccccCcchHHHHhh--cCCcEEEEcC-CCCccc---------cchHHHHHHHHHH
Q 022886 215 LDSRGFHVLCKATEEVVGHVNPY--SITGTLPLIRELQD--EGFDVQTAGY-GMPPLQ---------FTSFHSVYKTLIQ 280 (290)
Q Consensus 215 ~d~~~~~~l~~a~~~~~g~~~~~--~~~gg~d~~~~~~~--~g~~~v~~Gp-g~~~~~---------~~~~~~iy~~~~~ 280 (290)
.+..+.+.+.+++++. +-+..+ ...||||.+. ++. .|+|++.++. -.-.|. +..++++...++.
T Consensus 262 ~~~~l~~~l~~~A~~~-~Ip~Q~~~~~~ggTDa~~-i~~~~~Gvpt~~isiP~RY~Hs~~e~~~~~D~e~~~~Ll~~~~~ 339 (356)
T PRK09864 262 PNQKLVAALKSCAAHN-DLPLQFSTMKTGATDGGR-YNVMGGGRPVVALCLPTRYLHANSGMISKADYDALLTLIRDFLT 339 (356)
T ss_pred CCHHHHHHHHHHHHHc-CCCceEEEcCCCCchHHH-HHHhCCCCcEEEEeeccCcCCCcceEeEHHHHHHHHHHHHHHHH
Confidence 4566788888888886 655333 3447888544 443 6999999984 333333 4555665555543
No 85
>PRK05943 50S ribosomal protein L25; Reviewed
Probab=38.31 E-value=56 Score=23.54 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=17.0
Q ss_pred hHHHHhhcC-CcEEEEcCCCCcc
Q 022886 245 LIRELQDEG-FDVQTAGYGMPPL 266 (290)
Q Consensus 245 ~~~~~~~~g-~~~v~~Gpg~~~~ 266 (290)
.++.++..| +|++.||+|....
T Consensus 16 ~~r~lR~~G~vPaViYG~~~~~~ 38 (94)
T PRK05943 16 ASRRLRRAGKFPAIIYGGNEAPV 38 (94)
T ss_pred HHHHHHHCCCCCEEEECCCCCcE
Confidence 356688776 9999999997543
No 86
>cd00495 Ribosomal_L25_TL5_CTC Ribosomal_L25_TL5_CTC: Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain. L25 is a single-domain protein, homologous to the N-terminal domain of TL5 and CTC, which each contain two domains. CTC is a known stress protein, and proteins of this family are believed to have two functions, acting as both ribosomal and stress proteins. In Escherichia coli, cells deleted for L25 were found to be viable; however, these cells grew slowly and had impaired protein synthesis capability. In Bacillus subtilis, CTC is induced under stress conditions and located in the ribosome; it has been proposed that CTC may be necessary for accurate translation under stress conditions. Ribosomal_L25_TL5_CTC is found only in bacteria and some plastids. Due to its limited taxonomic diversity and the viability of cells deleted for L25, this protein is not believed to be necessary for ribosomal assembly. Eukaryotes contain a protein called L25, which is not homologous to bacterial L
Probab=35.42 E-value=74 Score=22.66 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=16.7
Q ss_pred hHHHHhhcC-CcEEEEcCCCCcc
Q 022886 245 LIRELQDEG-FDVQTAGYGMPPL 266 (290)
Q Consensus 245 ~~~~~~~~g-~~~v~~Gpg~~~~ 266 (290)
.++-++..| +|++.||+|....
T Consensus 15 ~~r~lR~~G~iPavvYG~~~~~~ 37 (91)
T cd00495 15 ASRRLRRAGKVPAVIYGKGKEPI 37 (91)
T ss_pred HHHHHHHCCCCCEEEECCCCCCE
Confidence 366688776 9999999986543
No 87
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=33.41 E-value=85 Score=22.06 Aligned_cols=29 Identities=0% Similarity=0.096 Sum_probs=24.8
Q ss_pred ceEEEEEEEECCCCChHHHHHHHHHHHHH
Q 022886 144 ECTVSGDVRLTPFYNVTDVMKRLQEYVDD 172 (290)
Q Consensus 144 ~a~~~~~iR~~p~~~~~~~~~~i~~~l~~ 172 (290)
+++..+.||.+++.+-.++.++|.++++-
T Consensus 8 ~f~~tIaIrvp~~~~y~~L~~ki~~kLkl 36 (80)
T cd06406 8 HFKYTVAIQVARGLSYATLLQKISSKLEL 36 (80)
T ss_pred EEEEEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 36668889999999999999999888864
No 88
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=31.54 E-value=81 Score=28.72 Aligned_cols=51 Identities=8% Similarity=-0.005 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcc--ccccCcchHHHHhh--cCCcEEEEcCCCC-ccc
Q 022886 215 LDSRGFHVLCKATEEVVGHVNPY--SITGTLPLIRELQD--EGFDVQTAGYGMP-PLQ 267 (290)
Q Consensus 215 ~d~~~~~~l~~a~~~~~g~~~~~--~~~gg~d~~~~~~~--~g~~~v~~Gpg~~-~~~ 267 (290)
.+..+.+.+.+++++. +-+..+ ...||||.+. ++. .|+|+..+|+.-. .|.
T Consensus 264 ~~~~l~~~l~~~A~~~-~Ip~Q~~~~~~~gtDa~~-~~~~~~Gi~t~~i~iP~Ry~Hs 319 (343)
T TIGR03106 264 FDYHLTRKLIRLCQDH-GIPHRRDVFRYYRSDAAS-AVEAGHDIRTALVTFGLDASHG 319 (343)
T ss_pred CCHHHHHHHHHHHHHc-CCCcEEEecCCCCChHHH-HHHcCCCCCEEEeeccccchhh
Confidence 4677888899999885 655322 3446888554 443 6999999997544 555
No 89
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=30.51 E-value=35 Score=34.27 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=30.6
Q ss_pred hcccccCCCceeEEEEEEecccCCCCCcccHHHHHHcc
Q 022886 3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDG 40 (290)
Q Consensus 3 ~L~~~~~~~~~~i~~~~~~dEE~g~~~~~G~~~l~~~~ 40 (290)
.+++.|++|.++|+|+.=.+||-|. .|+..+++..
T Consensus 387 ~~~k~gwrP~RtI~F~sWdAeEfGl---iGStE~~E~~ 421 (702)
T KOG2195|consen 387 KLKKRGWRPRRTILFASWDAEEFGL---LGSTEWAEEY 421 (702)
T ss_pred HHHHcCCCccceEEEEEccchhccc---cccHHHHHHH
Confidence 4567789999999999999999998 8999998854
No 90
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=28.70 E-value=1.1e+02 Score=25.33 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=25.0
Q ss_pred HHhhcCCcEEEEcCCCC---------ccc----cchHHHHHHHHHHHHHhh
Q 022886 248 ELQDEGFDVQTAGYGMP---------PLQ----FTSFHSVYKTLIQKTWLI 285 (290)
Q Consensus 248 ~~~~~g~~~v~~Gpg~~---------~~~----~~~~~~iy~~~~~~~~~~ 285 (290)
.++++|.++-+||.|+. .++ -....++|..|..+..-+
T Consensus 21 ~L~~~G~~V~SfGTGs~VkLPGps~d~PnvY~FgT~Y~~iy~dL~~kd~~l 71 (195)
T PF04722_consen 21 VLKKAGFNVRSFGTGSHVKLPGPSIDKPNVYDFGTPYDDIYNDLLRKDKEL 71 (195)
T ss_dssp HHHHTT-EEEEEE-SSSEEEEESSTTCEEEE-TTS-HHHHHHHHHHHHHHH
T ss_pred HHHHCCCceEeecCCCcccCCCCCCCCCcccCCCCcHHHHHHHHHHhCHHH
Confidence 36778999999998875 122 256788999988776543
No 91
>COG1825 RplY Ribosomal protein L25 (general stress protein Ctc) [Translation, ribosomal structure and biogenesis]
Probab=28.00 E-value=1.2e+02 Score=21.87 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=17.6
Q ss_pred hHHHHhhc-CCcEEEEcCCCCccc
Q 022886 245 LIRELQDE-GFDVQTAGYGMPPLQ 267 (290)
Q Consensus 245 ~~~~~~~~-g~~~v~~Gpg~~~~~ 267 (290)
.++.++.. ++|++.||.|....+
T Consensus 16 ~~RrlR~~G~iPAviYG~g~~~v~ 39 (93)
T COG1825 16 ASRRLRRAGKIPAVVYGGGKEPVN 39 (93)
T ss_pred hhHhHHhcCCCCEEEECCCCCCce
Confidence 36767766 499999999887654
No 92
>PRK06156 hypothetical protein; Provisional
Probab=25.73 E-value=6.1e+02 Score=24.41 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=26.8
Q ss_pred eeeeEEecCCCccceeCCceEEEEEEEECCCCChHHHHHHHHHHHHH
Q 022886 126 MKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDD 172 (290)
Q Consensus 126 i~~~~i~~gg~~~n~vP~~a~~~~~iR~~p~~~~~~~~~~i~~~l~~ 172 (290)
.++..++ ||...|+||+.|.+. ++..+ .++..+.+.+..+.
T Consensus 241 ~~l~~~~-gG~~~n~ip~~a~~~--~~~~~---~~~~~~~~~~~~~~ 281 (520)
T PRK06156 241 AEIVAMT-GGAFANQIPQTAVAT--LSGGD---PAALAAALQAAAAA 281 (520)
T ss_pred eeEEEEE-cCCcCCCCCCccEEE--EecCC---HHHHHHHHHHHHHH
Confidence 4456777 999999999999987 34332 44454555544443
No 93
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=25.25 E-value=1.5e+02 Score=20.79 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=25.2
Q ss_pred ceEEEEEEEECCCCChHHHHHHHHHHHHH
Q 022886 144 ECTVSGDVRLTPFYNVTDVMKRLQEYVDD 172 (290)
Q Consensus 144 ~a~~~~~iR~~p~~~~~~~~~~i~~~l~~ 172 (290)
.|++++.+|.+++.+-.++.+.|-+.+..
T Consensus 4 h~~fTVai~v~~g~~y~~L~~~ls~kL~l 32 (78)
T cd06411 4 QCAFTVALRAPRGADVSSLRALLSQALPQ 32 (78)
T ss_pred EEEEEEEEEccCCCCHHHHHHHHHHHhcC
Confidence 58899999999999999998888888764
No 94
>PF01386 Ribosomal_L25p: Ribosomal L25p family; InterPro: IPR020055 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry models the short-form of the ribosomal L25 protein. The long-form has homology to the general stress protein Ctc of Bacillus subtilis, a mesophile, and ribosomal protein TL5 of Thermus thermophilus, a thermophile. Ribosomal protein L25 of Escherichia coli and Haemophilus influenzae appear to be orthologous but consist only of the N-terminal half of Ctc and TL5. Both short (L25-like) and full-length (CTC-like) members of this family bind the E-loop of bacterial 5S rRNA.; GO: 0003735 structural constituent of ribosome, 0008097 5S rRNA binding, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2HGQ_Y 2HGJ_Y 2Y19_Z 2WRL_Z 3KIT_Z 2WH2_Z 2WDN_Z 3V25_Z 3HUZ_Z 3KIY_Z ....
Probab=24.23 E-value=61 Score=23.01 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=17.6
Q ss_pred hHHHHhhcC-CcEEEEcCCCCccc
Q 022886 245 LIRELQDEG-FDVQTAGYGMPPLQ 267 (290)
Q Consensus 245 ~~~~~~~~g-~~~v~~Gpg~~~~~ 267 (290)
.++.++..| +|++.||.+.....
T Consensus 13 ~~r~LR~~G~iPaviYG~~~~~~~ 36 (88)
T PF01386_consen 13 AARRLRREGKIPAVIYGKGKESIP 36 (88)
T ss_dssp HHHHHHHTTEEEEEEEESSEEEEE
T ss_pred HHHHHHHcCCceEEEECCCCCCEE
Confidence 467788877 99999999965333
Done!