Query 022888
Match_columns 290
No_of_seqs 130 out of 1395
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 06:52:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00955 3a01204 The Eye Pigm 100.0 3.9E-42 8.4E-47 334.8 27.5 252 1-256 354-616 (617)
2 TIGR00956 3a01205 Pleiotropic 100.0 4.4E-41 9.5E-46 350.2 25.3 253 1-256 415-697 (1394)
3 PLN03140 ABC transporter G fam 100.0 1.2E-40 2.6E-45 346.3 27.2 254 1-257 1206-1470(1470)
4 PLN03211 ABC transporter G-25; 100.0 1.7E-39 3.6E-44 317.0 25.4 244 2-253 403-658 (659)
5 PLN03140 ABC transporter G fam 100.0 3.6E-38 7.7E-43 328.0 27.0 250 1-253 529-789 (1470)
6 TIGR00956 3a01205 Pleiotropic 100.0 2.4E-38 5.1E-43 329.9 25.3 248 1-253 1091-1390(1394)
7 KOG0061 Transporter, ABC super 100.0 5.2E-36 1.1E-40 289.8 25.9 253 1-257 351-612 (613)
8 KOG0065 Pleiotropic drug resis 100.0 2.9E-35 6.2E-40 292.3 20.5 254 1-257 453-734 (1391)
9 KOG0065 Pleiotropic drug resis 100.0 2E-33 4.3E-38 279.2 16.5 254 1-257 1117-1387(1391)
10 PF01061 ABC2_membrane: ABC-2 99.8 5.8E-23 1.3E-27 173.3 -1.1 195 1-200 14-210 (210)
11 TIGR00025 Mtu_efflux ABC trans 99.8 1.3E-16 2.7E-21 137.8 22.8 225 1-250 1-229 (232)
12 TIGR01247 drrB daunorubicin re 99.7 5.6E-16 1.2E-20 134.0 21.8 221 2-247 7-234 (236)
13 TIGR01291 nodJ ABC-2 type tran 99.7 8.1E-16 1.8E-20 134.5 21.3 226 2-252 19-250 (253)
14 TIGR03062 pip_yhgE_Cterm YhgE/ 99.7 2.1E-15 4.5E-20 128.0 14.8 157 70-253 51-207 (208)
15 TIGR03861 phenyl_ABC_PedC alco 99.6 1.3E-13 2.9E-18 120.5 22.8 221 2-250 16-249 (253)
16 PRK15066 inner membrane transp 99.6 5.3E-13 1.2E-17 117.0 23.3 164 68-256 93-256 (257)
17 TIGR01248 drrC daunorubicin re 99.4 7E-12 1.5E-16 101.1 13.0 132 60-197 13-147 (152)
18 COG0842 ABC-type multidrug tra 99.4 2.4E-10 5.1E-15 100.3 21.4 169 63-254 115-284 (286)
19 COG1682 TagG ABC-type polysacc 98.9 9E-07 1.9E-11 77.5 21.7 152 78-254 106-257 (263)
20 TIGR03518 ABC_perm_GldF glidin 98.8 3.1E-06 6.8E-11 73.4 21.7 152 67-251 72-239 (240)
21 PF12698 ABC2_membrane_3: ABC- 98.7 3.6E-09 7.7E-14 95.0 0.0 157 61-246 182-343 (344)
22 PF06422 PDR_CDR: CDR ABC tran 98.5 1.6E-07 3.4E-12 70.4 5.1 50 209-259 31-80 (103)
23 PF12679 ABC2_membrane_2: ABC- 98.5 5.5E-05 1.2E-09 66.5 21.2 167 67-252 89-275 (277)
24 PRK15176 Vi polysaccharide exp 98.5 6.4E-05 1.4E-09 66.1 20.8 110 121-253 151-260 (264)
25 COG1277 NosY ABC-type transpor 97.7 0.02 4.3E-07 50.4 21.1 173 67-253 82-276 (278)
26 TIGR03733 lanti_perm_MutG lant 97.6 0.035 7.6E-07 48.3 23.4 69 77-145 85-158 (248)
27 PF12051 DUF3533: Protein of u 97.5 0.0049 1.1E-07 57.2 16.2 137 78-241 240-380 (382)
28 COG4587 ABC-type uncharacteriz 97.4 0.015 3.1E-07 49.8 15.7 162 68-251 84-258 (268)
29 PF03379 CcmB: CcmB protein; 97.3 0.017 3.8E-07 49.1 15.8 147 2-162 13-168 (215)
30 TIGR01190 ccmB heme exporter p 97.2 0.034 7.3E-07 47.1 16.0 145 2-160 10-163 (211)
31 COG1511 Predicted membrane pro 97.0 0.0089 1.9E-07 60.5 12.1 148 72-245 610-757 (780)
32 PF08370 PDR_assoc: Plant PDR 96.8 0.003 6.5E-08 42.8 4.6 47 209-256 11-58 (65)
33 TIGR01257 rim_protein retinal- 96.7 0.038 8.3E-07 61.2 15.0 99 56-156 1696-1798(2272)
34 TIGR01257 rim_protein retinal- 96.5 0.19 4.1E-06 56.0 18.6 144 48-194 661-806 (2272)
35 PF06182 ABC2_membrane_6: ABC- 95.9 0.97 2.1E-05 38.6 19.5 123 68-194 54-185 (229)
36 COG1668 NatB ABC-type Na+ effl 95.4 1.5 3.2E-05 41.1 17.0 77 78-154 228-316 (407)
37 PF12730 ABC2_membrane_4: ABC- 95.1 1.6 3.5E-05 36.0 18.4 87 68-155 70-172 (232)
38 COG2386 CcmB ABC-type transpor 94.1 3 6.6E-05 35.0 13.5 93 67-161 70-170 (221)
39 COG4200 Uncharacterized protei 93.6 4.1 9E-05 34.7 20.7 145 69-253 76-233 (239)
40 COG3559 TnrB3 Putative exporte 93.0 8 0.00017 36.2 19.1 28 4-31 296-323 (536)
41 KOG4255 Uncharacterized conser 87.6 22 0.00048 32.4 15.1 58 227-285 189-249 (439)
42 TIGR03732 lanti_perm_MutE lant 84.2 26 0.00057 30.2 21.9 113 69-196 64-189 (241)
43 KOG0059 Lipid exporter ABCA1 a 83.7 13 0.00028 38.6 11.4 99 59-160 317-417 (885)
44 PF04277 OAD_gamma: Oxaloaceta 68.9 10 0.00022 26.4 4.2 8 235-242 10-17 (79)
45 TIGR01195 oadG_fam sodium pump 59.5 25 0.00053 25.0 4.7 15 233-247 11-25 (82)
46 TIGR01478 STEVOR variant surfa 58.5 11 0.00025 33.1 3.3 31 229-260 263-293 (295)
47 PF12273 RCR: Chitin synthesis 58.0 12 0.00026 29.0 3.2 19 228-246 2-20 (130)
48 PF00558 Vpu: Vpu protein; In 57.7 10 0.00022 26.9 2.3 18 269-286 44-61 (81)
49 COG3559 TnrB3 Putative exporte 57.2 1.8E+02 0.0039 27.7 13.9 109 78-195 124-234 (536)
50 PF06679 DUF1180: Protein of u 55.9 19 0.00042 29.1 4.1 25 227-253 94-118 (163)
51 PTZ00370 STEVOR; Provisional 55.8 13 0.00028 32.8 3.3 31 229-260 259-289 (296)
52 COG2851 CitM H+/citrate sympor 54.5 9.6 0.00021 35.1 2.3 68 219-289 167-234 (433)
53 PF10766 DUF2592: Protein of u 51.0 35 0.00077 20.5 3.5 21 6-26 4-24 (41)
54 COG4393 Predicted membrane pro 46.5 2.2E+02 0.0047 26.0 9.3 18 133-150 42-59 (405)
55 PF04277 OAD_gamma: Oxaloaceta 45.8 59 0.0013 22.5 4.9 17 231-247 16-32 (79)
56 PRK03814 oxaloacetate decarbox 45.2 39 0.00085 24.2 3.8 16 232-247 14-29 (85)
57 COG4325 Predicted membrane pro 44.5 2.7E+02 0.0059 26.0 11.4 71 92-162 130-204 (464)
58 PF11446 DUF2897: Protein of u 41.7 43 0.00093 21.9 3.2 24 234-257 8-31 (55)
59 PF09847 DUF2074: Predicted pe 41.4 3.2E+02 0.007 26.0 15.3 101 2-110 262-362 (449)
60 PF01102 Glycophorin_A: Glycop 38.7 49 0.0011 25.5 3.7 8 230-237 70-77 (122)
61 PF12273 RCR: Chitin synthesis 38.6 29 0.00062 26.8 2.5 21 234-254 5-25 (130)
62 PF02009 Rifin_STEVOR: Rifin/s 37.6 38 0.00083 30.4 3.4 29 227-256 258-286 (299)
63 KOG4404 Tandem pore domain K+ 37.0 2.1E+02 0.0046 25.9 7.9 76 183-265 186-261 (350)
64 KOG2533 Permease of the major 36.8 4E+02 0.0086 25.8 13.3 20 41-60 213-232 (495)
65 TIGR03061 pip_yhgE_Nterm YhgE/ 33.8 51 0.0011 26.4 3.4 28 1-28 6-36 (164)
66 PF11189 DUF2973: Protein of u 33.5 66 0.0014 21.8 3.3 16 236-251 5-20 (65)
67 PF15102 TMEM154: TMEM154 prot 30.5 24 0.00052 28.0 0.8 22 254-275 83-104 (146)
68 PF01102 Glycophorin_A: Glycop 29.3 88 0.0019 24.0 3.8 14 231-244 65-78 (122)
69 KOG4112 Signal peptidase subun 29.1 1.1E+02 0.0024 22.3 3.9 19 171-193 66-84 (101)
70 TIGR01477 RIFIN variant surfac 28.5 64 0.0014 29.5 3.3 30 227-257 312-341 (353)
71 PF05545 FixQ: Cbb3-type cytoc 28.3 93 0.002 19.4 3.2 23 230-252 11-33 (49)
72 PTZ00046 rifin; Provisional 27.9 66 0.0014 29.5 3.3 30 227-257 317-346 (358)
73 COG1115 AlsT Na+/alanine sympo 27.6 3.8E+02 0.0083 25.6 8.3 33 66-98 118-152 (452)
74 PF15176 LRR19-TM: Leucine-ric 27.1 2.4E+02 0.0052 20.9 5.4 28 226-253 15-42 (102)
75 KOG1608 Protein transporter of 25.0 1.3E+02 0.0028 26.9 4.5 24 261-284 340-369 (374)
76 PF15330 SIT: SHP2-interacting 24.8 2.3E+02 0.0051 21.2 5.3 10 236-245 12-21 (107)
77 PF11119 DUF2633: Protein of u 23.4 1.7E+02 0.0036 19.4 3.7 21 230-250 11-31 (59)
78 PF03348 Serinc: Serine incorp 22.9 6.6E+02 0.014 23.8 19.0 30 227-256 281-310 (429)
79 PF15050 SCIMP: SCIMP protein 21.5 84 0.0018 24.0 2.3 7 246-252 28-34 (133)
80 PF15086 UPF0542: Uncharacteri 21.5 1.6E+02 0.0035 20.3 3.4 29 139-167 12-40 (74)
81 PRK00753 psbL photosystem II r 21.5 1.8E+02 0.0038 17.3 3.1 23 5-27 16-38 (39)
82 PF01528 Herpes_glycop: Herpes 21.5 1.3E+02 0.0028 27.9 4.0 18 227-244 305-322 (374)
83 PF08507 COPI_assoc: COPI asso 21.0 2.3E+02 0.0049 21.9 4.9 14 240-253 96-109 (136)
84 PF11044 TMEMspv1-c74-12: Plec 20.9 1.9E+02 0.0042 17.9 3.3 17 240-256 14-30 (49)
No 1
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.9e-42 Score=334.78 Aligned_cols=252 Identities=21% Similarity=0.404 Sum_probs=236.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHHHHHHHHhh-hchhhhhhhHHHHHHHHhCCCCch
Q 022888 1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTI-GGFPSFVEDMKVFERERLNGHYGA 79 (290)
Q Consensus 1 ~~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~er~v~~rE~~~g~Y~~ 79 (290)
.||||.++..++++.+++|+++|.+|++.+.++++++++.|.+|++++...+..+ ..++.++.||.++.||+.+|+|++
T Consensus 354 ~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~ 433 (617)
T TIGR00955 354 VLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRV 433 (617)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCH
Confidence 3799999999999999999999999999999999999999999999888887765 778899999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 022888 80 TAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGL 159 (290)
Q Consensus 80 ~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~~~ 159 (290)
.+|++||+++++|..++.+++|.++.|+|+|+++++.+|+.+++++++..+++.++|+++++++||...|+.++++++.+
T Consensus 434 ~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~ 513 (617)
T TIGR00955 434 SAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIP 513 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcc-c---------CCCCHHHHHhhhhccccCccchh
Q 022888 160 MILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKF-D---------NNLDGEQVLRDKWQLQMGYSKWV 229 (290)
Q Consensus 160 ~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~-~---------c~~~g~~~L~~~~~~~~~~~~~~ 229 (290)
+++++|++++.++||+ ||+ |++|+||++|++++++.|||+|.++ . |+.+|+++++. +|++.++ .|.
T Consensus 514 ~~lf~G~~i~~~~ip~-~~~-W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~-~g~~~~~-~~~ 589 (617)
T TIGR00955 514 FLLFGGFFINSDSIPV-YFK-WLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILET-LSFRNAD-LYL 589 (617)
T ss_pred HHHHhhcccChhhccH-HHH-HHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHh-cCCCccc-HHH
Confidence 9999999999999998 676 5999999999999999999998764 3 45679999998 8998876 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 022888 230 DLAILFGMVVFYRLVFLGIIKTVEKMK 256 (290)
Q Consensus 230 ~~~iL~~~~v~~~~l~~~~l~~~~~~~ 256 (290)
|+++|+++.++|+++++++|+++.+++
T Consensus 590 ~~~il~~~~~~~~~l~~~~L~~~~~~~ 616 (617)
T TIGR00955 590 DLIGLVILIFFFRLLAYFALRIRIRRK 616 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999865543
No 2
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.4e-41 Score=350.24 Aligned_cols=253 Identities=22% Similarity=0.427 Sum_probs=239.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhCCCCchH
Q 022888 1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGAT 80 (290)
Q Consensus 1 ~~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~ 80 (290)
+||||.++..++++.+++|+++|++|++++++++++++|.|++|+++++.+++++..++.+..||++|.||+.+++|+++
T Consensus 415 ~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ 494 (1394)
T TIGR00956 415 MKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPS 494 (1394)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHH
Confidence 48999999999999999999999999999999999999999999999998888888888888999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 022888 81 AFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLM 160 (290)
Q Consensus 81 ~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~~~~ 160 (290)
+|++|+.++++|..++.+++|.+++|||+|+++++++|+.+++++++..+++.+++.++++++||...|+.+++++++++
T Consensus 495 ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~ 574 (1394)
T TIGR00956 495 ADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLAL 574 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCC------------------------------CC
Q 022888 161 ILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN------------------------------LD 210 (290)
Q Consensus 161 ~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~------------------------------~~ 210 (290)
++++|+++|.++||. ||+ |++|+||++|++|+++.|||+|.++.|+ ++
T Consensus 575 ~lf~Gf~i~~~~mp~-~~~-W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~ 652 (1394)
T TIGR00956 575 SIYTGFAIPRPSMLG-WSK-WIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVD 652 (1394)
T ss_pred HHHcccccChhhccH-HHH-HHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCccccc
Confidence 999999999999998 666 5999999999999999999999887762 37
Q ss_pred HHHHHhhhhccccCccchhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 022888 211 GEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMK 256 (290)
Q Consensus 211 g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~~~~ 256 (290)
|+++|+..++++.++ .|+|+++|++|+++|++++++++++.+...
T Consensus 653 G~~~L~~~~~~~~~~-~w~n~gil~~~~v~f~~~~~l~l~~~~~~~ 697 (1394)
T TIGR00956 653 GDDYLKLSFQYYNSH-KWRNFGIIIGFTVFFFFVYILLTEFNKGAK 697 (1394)
T ss_pred HHHHHHhcCCcccch-hhHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 899999768898886 999999999999999999999999876433
No 3
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.2e-40 Score=346.35 Aligned_cols=254 Identities=21% Similarity=0.356 Sum_probs=236.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhCCCCCh---hhHHHhHHHHHHHHHHHHHHhh-hchhhhhhhHHHHHHHHhCCC
Q 022888 1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDN---NSIQARGSLLMFVASYLTFMTI-GGFPSFVEDMKVFERERLNGH 76 (290)
Q Consensus 1 ~~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~er~v~~rE~~~g~ 76 (290)
+||||.++..|+++.+++|+++|++|++++++. .+++++.|++|+++.+.++.++ ..+|.+..||.+|.||+.+|+
T Consensus 1206 ~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~ 1285 (1470)
T PLN03140 1206 YWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGM 1285 (1470)
T ss_pred HHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 489999999999999999999999999998764 5677889999988887777665 667899999999999999999
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 022888 77 YGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGI 156 (290)
Q Consensus 77 Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~ 156 (290)
|++.+|++|++++|+|+.++++++|.+++|+|+|++++.+.|+.+++++++..+++.++|+++++++||.+.|..+++++
T Consensus 1286 Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~ 1365 (1470)
T PLN03140 1286 YSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAF 1365 (1470)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCC-------CCHHHHHhhhhccccCccchh
Q 022888 157 QGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN-------LDGEQVLRDKWQLQMGYSKWV 229 (290)
Q Consensus 157 ~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~-------~~g~~~L~~~~~~~~~~~~~~ 229 (290)
+.++++|+|+++|.++||. ||+| ++|+||++|++++++.++|.|.+..|+ .++++++.+.+|+++++ .|+
T Consensus 1366 ~~~~~lf~Gf~i~~~~iP~-~~~W-~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~ 1442 (1470)
T PLN03140 1366 YGLFNLFSGFFIPRPKIPK-WWVW-YYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDF-MGP 1442 (1470)
T ss_pred HHHHHHHeeeccChHHCch-HHHH-HHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCccc-ccc
Confidence 9999999999999999998 7885 999999999999999999999887654 35678877779999886 999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 022888 230 DLAILFGMVVFYRLVFLGIIKTVEKMKP 257 (290)
Q Consensus 230 ~~~iL~~~~v~~~~l~~~~l~~~~~~~~ 257 (290)
+++++++|+++|++++++++|+.+++|+
T Consensus 1443 ~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1443 VAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999999999998773
No 4
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.7e-39 Score=316.96 Aligned_cols=244 Identities=17% Similarity=0.295 Sum_probs=217.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHHHHHHHHh-hhchhhhhhhHHHHHHHHhCCCCchH
Q 022888 2 YRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMT-IGGFPSFVEDMKVFERERLNGHYGAT 80 (290)
Q Consensus 2 ~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~er~v~~rE~~~g~Y~~~ 80 (290)
|||+.+...|+++.+++|+++|++|++++ .+++++|.|++|+++++..+.+ +..++.++.||+++.||+.+|+|++.
T Consensus 403 ~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~ 480 (659)
T PLN03211 403 RKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLS 480 (659)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHH
Confidence 68899999999999999999999999985 6789999999999988776655 58899999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 022888 81 AFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLM 160 (290)
Q Consensus 81 ~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~~~~ 160 (290)
+|++||+++|+|..++.+++|.+++|||+|+++++++|+.+++++++..+++.++|+++++++||...|+.++++++.++
T Consensus 481 ~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~ 560 (659)
T PLN03211 481 SYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAF 560 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCc-----ccCCC------CHHHHHhhhhccccCccchh
Q 022888 161 ILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLK-----FDNNL------DGEQVLRDKWQLQMGYSKWV 229 (290)
Q Consensus 161 ~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~-----~~c~~------~g~~~L~~~~~~~~~~~~~~ 229 (290)
++|||++++ ++|+ ||+| ++|+||++|++++++.|||.+.+ +.|+. .+..++.. ..++.. +.|.
T Consensus 561 ~lfsGf~i~--~ip~-~~~W-~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~-~~~~~~-~~~~ 634 (659)
T PLN03211 561 VLTGGFYVH--KLPS-CMAW-IKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEE-DVAGQI-SPAT 634 (659)
T ss_pred HHHhhhhHh--hchH-HHHH-HHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchh-hhhccc-chHH
Confidence 999999996 7998 6775 99999999999999999998653 24531 11223333 223323 4899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 022888 230 DLAILFGMVVFYRLVFLGIIKTVE 253 (290)
Q Consensus 230 ~~~iL~~~~v~~~~l~~~~l~~~~ 253 (290)
|+++|+++.++++++++++|++.+
T Consensus 635 ~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 635 SVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998654
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.6e-38 Score=327.97 Aligned_cols=250 Identities=18% Similarity=0.315 Sum_probs=230.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhCCCCCh---hhHHHhHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhCCCC
Q 022888 1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDN---NSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHY 77 (290)
Q Consensus 1 ~~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y 77 (290)
++||+..++.++++.+++|+++|++|++.+.++ .+.+.+.|.+|++++...+.++..++.++.||++|.|||+.++|
T Consensus 529 ~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y 608 (1470)
T PLN03140 529 MKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFH 608 (1470)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCc
Confidence 479999999999999999999999999997542 34566788888888888888888899999999999999999999
Q ss_pred chHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 022888 78 GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQ 157 (290)
Q Consensus 78 ~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~ 157 (290)
++++|++|+.+.++|..++.+++|.+++|||+|+++++++|+.+++++++..+++.+++.+++++++|...|+.++++++
T Consensus 609 ~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~ 688 (1470)
T PLN03140 609 PPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVL 688 (1470)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCccc---C----CCCHHHHHhhhhccccCc-cchh
Q 022888 158 GLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFD---N----NLDGEQVLRDKWQLQMGY-SKWV 229 (290)
Q Consensus 158 ~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~---c----~~~g~~~L~~~~~~~~~~-~~~~ 229 (290)
+++++++||++|.++||+ ||+| ++|+||++|++++++.|||.+..+. | .++|+++|+. +|++.++ +.|.
T Consensus 689 l~~~lf~Gf~i~~~~ip~-w~~W-~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~-~g~~~~~~~~w~ 765 (1470)
T PLN03140 689 LLVFLLGGFILPKGEIPN-WWEW-AYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNI-FDVFTDKNWYWI 765 (1470)
T ss_pred HHHHHHccceechHhCch-HHHH-HHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHh-cCcCccccchhh
Confidence 999999999999999998 6775 9999999999999999999876543 2 2789999987 8887654 4799
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 022888 230 DLAILFGMVVFYRLVFLGIIKTVE 253 (290)
Q Consensus 230 ~~~iL~~~~v~~~~l~~~~l~~~~ 253 (290)
++++|++++++|++++++++++.+
T Consensus 766 ~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 766 GVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999876
No 6
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.4e-38 Score=329.87 Aligned_cols=248 Identities=17% Similarity=0.282 Sum_probs=228.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHHHHHHHHhhhchhhhhhhHHHH-HHHHhCCCCch
Q 022888 1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVF-ERERLNGHYGA 79 (290)
Q Consensus 1 ~~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~er~v~-~rE~~~g~Y~~ 79 (290)
+||||.++..|+++.+++|+++|++|+++++++.+++|+.+.+|+.+....+.....++.++.||.++ .||+.+|+|++
T Consensus 1091 ~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~ 1170 (1394)
T TIGR00956 1091 YWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSW 1170 (1394)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCH
Confidence 48999999999999999999999999999999999999999999888777666557888899999886 89999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhH-------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 022888 80 TAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQH-------FIYFVLLLFACMLLVESLMMIVASLVPNYLTGIIT 152 (290)
Q Consensus 80 ~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~-------f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i 152 (290)
.+|++|++++|+|..++.+++|.+++|+++|++++... |+.++++++++.+++.++|+++++++||...|+.+
T Consensus 1171 ~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~ 1250 (1394)
T TIGR00956 1171 LAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVL 1250 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHH
Confidence 99999999999999999999999999999999887765 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCC------------------------
Q 022888 153 GAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN------------------------ 208 (290)
Q Consensus 153 ~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~------------------------ 208 (290)
+++++.++++|||+++|.++||. +|+| ++|+||++|++++++.++|+|.++.|.
T Consensus 1251 ~~~~~~~~~lf~G~~~~~~~ip~-~~~w-~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~ 1328 (1394)
T TIGR00956 1251 ASLLFTMCLSFCGVLAPPSRMPG-FWIF-MYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLE 1328 (1394)
T ss_pred HHHHHHHHHHhccccCChhHCcH-HHhH-HHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHh
Confidence 99999999999999999999998 7885 999999999999999999998875431
Q ss_pred --------------------CCHHHHHhhhhccccCccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 022888 209 --------------------LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVE 253 (290)
Q Consensus 209 --------------------~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~ 253 (290)
.+|+++|+. ++++.++ .|+|+++++++.+++ ++++++++++.
T Consensus 1329 ~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~~~~~-~w~~~~i~~~~~~~~-~~~~~~l~~~~ 1390 (1394)
T TIGR00956 1329 NAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISSKYSG-RWRNFGIFIAFIFFN-IIATVFFYWLA 1390 (1394)
T ss_pred hCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCCcccc-cccchhhhhHHHHHH-HHHHHhhheEE
Confidence 389999998 7888876 999999999999888 77778787753
No 7
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.2e-36 Score=289.80 Aligned_cols=253 Identities=30% Similarity=0.601 Sum_probs=236.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHHHHHHHHhh-hchhhhhhhHHHHHHHHhCCCCch
Q 022888 1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTI-GGFPSFVEDMKVFERERLNGHYGA 79 (290)
Q Consensus 1 ~~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~er~v~~rE~~~g~Y~~ 79 (290)
++|||.+...|.++.+..++++|.+|++.+.+..+++++.+++++++....+..+ ++++.++.||++|.||+.+|+|+.
T Consensus 351 ~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~ 430 (613)
T KOG0061|consen 351 IRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRL 430 (613)
T ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhH
Confidence 3799999999999999999999999999999999999999999999998877776 689999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 022888 80 TAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGL 159 (290)
Q Consensus 80 ~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~~~ 159 (290)
++|++|+.++++|..++.+++|.+++|+|+|++++..+|+.+.+++++..+++.++|+++++..||...|..+++++..+
T Consensus 431 s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~ 510 (613)
T KOG0061|consen 431 SSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLP 510 (613)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCc--------ccCCCCHHHHHhhhhccccCccchhhH
Q 022888 160 MILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLK--------FDNNLDGEQVLRDKWQLQMGYSKWVDL 231 (290)
Q Consensus 160 ~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~--------~~c~~~g~~~L~~~~~~~~~~~~~~~~ 231 (290)
++++||++++.+++|+ +|+ |++|+|+.+|++|+++.|+|.+.. ..|..+|.+++++ .+++.++ .|.|+
T Consensus 511 f~l~~G~fi~~~~ip~-~~~-w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~-~~~~l 586 (613)
T KOG0061|consen 511 FLLFGGFFINFDSIPK-YFR-WISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQ-LGFEDSS-FWLDL 586 (613)
T ss_pred HHHHhhhhcCcccccH-HHH-HHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHh-cCCcccc-cchhH
Confidence 9999999999999998 555 599999999999999999999622 2345899999999 7887765 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccc
Q 022888 232 AILFGMVVFYRLVFLGIIKTVEKMKP 257 (290)
Q Consensus 232 ~iL~~~~v~~~~l~~~~l~~~~~~~~ 257 (290)
.+++++.++|+++++++++++.+++.
T Consensus 587 ~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 587 LVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccC
Confidence 99999999999999999999877553
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.9e-35 Score=292.26 Aligned_cols=254 Identities=24% Similarity=0.437 Sum_probs=235.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhCCC-CChhhHHHhHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhCCCCch
Q 022888 1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLG-TDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGA 79 (290)
Q Consensus 1 ~~R~~~~~~~~~~~~~~~~li~G~~f~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~ 79 (290)
+.||..++....++.++.++++|++|++.+ ++..+...|.+.+||.+++..+.++..++.....|++++|+|+...|++
T Consensus 453 ~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p 532 (1391)
T KOG0065|consen 453 MKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPP 532 (1391)
T ss_pred HhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccCh
Confidence 368999999999999999999999999999 6777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 022888 80 TAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGL 159 (290)
Q Consensus 80 ~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~~~ 159 (290)
+++.++..+.++|..++.+.++.+|.|++.|+.+++++|+.++++++++..++.++..++++++++...|+.++.+.++.
T Consensus 533 ~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~ 612 (1391)
T KOG0065|consen 533 WAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLV 612 (1391)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCC---------------------------CCHH
Q 022888 160 MILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN---------------------------LDGE 212 (290)
Q Consensus 160 ~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~---------------------------~~g~ 212 (290)
..+++|+.+|.++||+ ||+ |++|++|+.|++|+++.|||.+..++|. ..|+
T Consensus 613 i~m~~Gf~Ip~~~m~~-W~~-Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~ 690 (1391)
T KOG0065|consen 613 LFMYGGFVIPKKDMPP-WFR-WIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGR 690 (1391)
T ss_pred HHHHcceeeeccccch-HHH-HHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecc
Confidence 9999999999999998 666 5999999999999999999999888874 3455
Q ss_pred HHHhhhhccccCccchhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 022888 213 QVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKP 257 (290)
Q Consensus 213 ~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~~~~~ 257 (290)
+++...|++++.+ .|+|++++++|.++|.++..+++.+.+..+.
T Consensus 691 ~~l~~~~~y~~~~-~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~ 734 (1391)
T KOG0065|consen 691 DYLKVQYQYEYKW-YWRNFGILLGFTVFFNFVFLIALEYLKPLKK 734 (1391)
T ss_pred cccccccccccce-eEeehhHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 6666656677765 9999999999999999999999999775544
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-33 Score=279.25 Aligned_cols=254 Identities=19% Similarity=0.302 Sum_probs=229.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHHHHHHHHhhh-chhhhhhhHHHHHHHHhCCCCch
Q 022888 1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIG-GFPSFVEDMKVFERERLNGHYGA 79 (290)
Q Consensus 1 ~~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~er~v~~rE~~~g~Y~~ 79 (290)
+||||.++..|+++.++.|+++|+.||+.+++..+++|.++.+|+.+.+..-...+ ..+.+..||.++.||+.+|+||+
T Consensus 1117 yWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~ 1196 (1391)
T KOG0065|consen 1117 YWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSW 1196 (1391)
T ss_pred HhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccH
Confidence 69999999999999999999999999999999999999999999998877666554 55666778888899999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 022888 80 TAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGL 159 (290)
Q Consensus 80 ~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~~~ 159 (290)
.+|++|++++|+|..++++.+|.++.|+++|+..++.+++.+++..+++.++...+|+++.+++||.+.|..+.++++..
T Consensus 1197 ~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~ 1276 (1391)
T KOG0065|consen 1197 TPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSF 1276 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCC------------CCHHHHHhhhhc----ccc
Q 022888 160 MILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN------------LDGEQVLRDKWQ----LQM 223 (290)
Q Consensus 160 ~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~------------~~g~~~L~~~~~----~~~ 223 (290)
.++|||++.|++.||+ ||.| ++|+||.+|.+++++...+++.+..|. .+-.++++..+| +.+
T Consensus 1277 ~~~F~G~l~p~~~iP~-fW~w-my~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~ 1354 (1391)
T KOG0065|consen 1277 WNLFSGFLQPRSLIPK-FWIW-MYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLH 1354 (1391)
T ss_pred HHHhcccccccccccc-eeee-eeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceec
Confidence 9999999999999999 8995 999999999999999999999998884 455678888777 555
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 022888 224 GYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKP 257 (290)
Q Consensus 224 ~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~~~~~ 257 (290)
+. .-..-.+...+.+.+..++.+.+|+.+++|.
T Consensus 1355 n~-~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1355 NP-LATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred cC-cceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 43 3334456667888999999999999887654
No 10
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.85 E-value=5.8e-23 Score=173.32 Aligned_cols=195 Identities=26% Similarity=0.378 Sum_probs=172.5
Q ss_pred CCCChhHH-HHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHHHHHHHHhh-hchhhhhhhHHHHHHHHhCCCCc
Q 022888 1 MYRDLGYY-WFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTI-GGFPSFVEDMKVFERERLNGHYG 78 (290)
Q Consensus 1 ~~R~~~~~-~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~er~v~~rE~~~g~Y~ 78 (290)
.+|||... ...++.+++.++++|.++.+.+++.++. ++.+.+...+....+... .......+||+.+.||+.++.|+
T Consensus 14 ~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (210)
T PF01061_consen 14 FWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERERGTLERERASPLYS 92 (210)
T ss_pred HHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhcccccccccccccc
Confidence 37999888 9999999999999999999888444444 667777777666665544 44477899999999999999999
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 022888 79 ATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQG 158 (290)
Q Consensus 79 ~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~~ 158 (290)
+.+|.++|.+.+++..++..+++..+.+.+.|++.+ +++.+.+++++...++.++|.+++.++++.+.+..+.+.+..
T Consensus 93 ~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 170 (210)
T PF01061_consen 93 PFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPSFRDASAISSLILL 170 (210)
T ss_pred chhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhhhhhhhhhhhhccc
Confidence 999999999999999999999999999999999866 778888999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhc
Q 022888 159 LMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEF 200 (290)
Q Consensus 159 ~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~ 200 (290)
+++++||.++|.+++|+ |.+|+.+++|.+|+.|++..++|
T Consensus 171 ~~~~~sg~~~p~~~lP~--~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 171 LLFFLSGVFFPLSSLPS--WLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred ccccceeeecchHHChH--HHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999997 44469999999999999988765
No 11
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.77 E-value=1.3e-16 Score=137.79 Aligned_cols=225 Identities=12% Similarity=0.023 Sum_probs=152.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHH-hHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhCCCCch
Q 022888 1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQA-RGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGA 79 (290)
Q Consensus 1 ~~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~ 79 (290)
.+|||..+...+.+|+++-++++.++-+.. ..+..+. ..+.+-+.....+.......-..-+|+..++|-+.++. ++
T Consensus 1 ~~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~er~~G~l~rl~~~P~-~~ 78 (232)
T TIGR00025 1 LLRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAISTAFTGQAIAVARDRRYGALKRLGATPL-PR 78 (232)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHhcCCC-cH
Confidence 479999999999999999999988886521 1122221 12222222222222221111222334445667776666 99
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHH
Q 022888 80 TAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVP---NYLTGIITGAGI 156 (290)
Q Consensus 80 ~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~---~~~~a~~i~~~~ 156 (290)
.+|+++|.+...+..+.+..+...+ +.+.|.+.... ....++...+....+.+++.+++.+.+ +.+.+..+.+.+
T Consensus 79 ~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~ 156 (232)
T TIGR00025 79 LGILAGRSLAVVARVFLQTLILLVI-GFVLGFRFAGG-ALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANLV 156 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 9999999888888877776555544 45678875432 334444555555666777777777764 444557788888
Q ss_pred HHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhccccCccchhhHHHHHH
Q 022888 157 QGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFG 236 (290)
Q Consensus 157 ~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~ 236 (290)
.+++.++||.++|.+.||+ |.+|+++++|.+|+.+++.....++.+. + ..|.+++++++
T Consensus 157 ~~p~~~lSG~~~P~~~mP~--~lq~i~~~~P~t~~~~~~r~~~~~~~~~------------------~-~~~~~~~~l~~ 215 (232)
T TIGR00025 157 WFIFALLSAGLVPLNLIPT--WIKWFVRVQPSSYATEALRQAATVSVDT------------------F-GAVRDLVVVLA 215 (232)
T ss_pred HHHHHHHhheeeecccccH--HHHHHHHhCcHHHHHHHHHHHHcCCCCh------------------h-hHHHHHHHHHH
Confidence 9999999999999999998 5556999999999999987655443222 1 26889999999
Q ss_pred HHHHHHHHHHHHHH
Q 022888 237 MVVFYRLVFLGIIK 250 (290)
Q Consensus 237 ~~v~~~~l~~~~l~ 250 (290)
+++++..++....|
T Consensus 216 ~~~v~~~la~~~~~ 229 (232)
T TIGR00025 216 FWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHHHHHh
Confidence 99888877766444
No 12
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.74 E-value=5.6e-16 Score=134.01 Aligned_cols=221 Identities=13% Similarity=0.025 Sum_probs=161.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhCCC-CC--hhhHHH----hHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhC
Q 022888 2 YRDLGYYWFRLGVYVLLGIGLATVFSNLG-TD--NNSIQA----RGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLN 74 (290)
Q Consensus 2 ~R~~~~~~~~~~~~~~~~li~G~~f~~~~-~~--~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~ 74 (290)
+|||..++..+++|++..+++|.++-+.- ++ .++... ..|.+.+.....+... .......+|+..++|-+.+
T Consensus 7 ~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~ 85 (236)
T TIGR01247 7 IRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFS-GISVIWDRQFGFLKEILVA 85 (236)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhCHHHHHHhC
Confidence 69999999999999999999999875431 11 111111 1233333333222222 1111223444455555555
Q ss_pred CCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Q 022888 75 GHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGA 154 (290)
Q Consensus 75 g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~ 154 (290)
+. ++.+|+++|.+.+.+..+++..+...+.+++.+.+. ..+....+...+..++..++|.+++...+|++.++.+.+
T Consensus 86 P~-~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~ 162 (236)
T TIGR01247 86 PA-SRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMS 162 (236)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 55 899999999999999999999888888888777553 345555566667788889999999999999999999999
Q ss_pred HHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhccccCccchhhHHHH
Q 022888 155 GIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAIL 234 (290)
Q Consensus 155 ~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL 234 (290)
.+..++.++||.++|.+.+|+ +++ |+.+++|.+|+.|++.....++.+. + +.+.++++|
T Consensus 163 ~~~~~l~~lsG~~~P~~~~P~-~~~-~i~~~~P~~~~~~~~r~~~~~~~~~------------------~-~~~~~~~~l 221 (236)
T TIGR01247 163 MLMLPMFFLSGAFYPITTMPA-WMQ-GLAKINPLTYAVDGARYYLAGVSPT------------------F-PLEQDLLVL 221 (236)
T ss_pred HHHHHHHHHHHhhcCHHhCHH-HHH-HHHHHCcHHHHHHHHHHHHhCCCcc------------------c-chHHHHHHH
Confidence 999999999999999999998 445 5999999999999976544332211 2 267899999
Q ss_pred HHHHHHHHHHHHH
Q 022888 235 FGMVVFYRLVFLG 247 (290)
Q Consensus 235 ~~~~v~~~~l~~~ 247 (290)
+++.+++..++..
T Consensus 222 ~~~~~~~~~l~~~ 234 (236)
T TIGR01247 222 TLLAVIFVGIAAV 234 (236)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888754
No 13
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.73 E-value=8.1e-16 Score=134.47 Aligned_cols=226 Identities=15% Similarity=0.061 Sum_probs=160.1
Q ss_pred CCC-hhHHHHHHHHHHHHHHHHHHHHhCCCCChhh--HHHh--HHHHHHHHHHHHHH-hhhchhhhhhhHHHHHHHHhCC
Q 022888 2 YRD-LGYYWFRLGVYVLLGIGLATVFSNLGTDNNS--IQAR--GSLLMFVASYLTFM-TIGGFPSFVEDMKVFERERLNG 75 (290)
Q Consensus 2 ~R~-~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~--~~~~--~~~l~~~~~~~~~~-~~~~~~~~~~er~v~~rE~~~g 75 (290)
+|+ |......+++|++.-+++|..+-...++.++ ..+. -|++.+.+...+.. +....-.-.+|+..++|-+...
T Consensus 19 ~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~~~~~~~~~~~~r~~g~~~~l~~~P 98 (253)
T TIGR01291 19 KKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFETIYATFARMRVTRTWEAMLYTP 98 (253)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHhCC
Confidence 577 8999999999999999999998643221111 1111 13333322222211 1111111223455566666666
Q ss_pred CCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 022888 76 HYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAG 155 (290)
Q Consensus 76 ~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~ 155 (290)
. ++..++++|.+.+....+++.++...+.+. .|..+ ..+......++++..+++.++|.+++.+.++.+.+..+.+.
T Consensus 99 v-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~-~~~~l~~~~~~ll~~l~~~~lg~~~a~~~~~~~~~~~i~~~ 175 (253)
T TIGR01291 99 I-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIE-WWSLIYILPVIALTGLAFASLSMLVAALAPSYAYFAFYQSL 175 (253)
T ss_pred C-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6 899999999999988888887766555544 44433 34555566677778888899999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhccccCccchhhHHHHH
Q 022888 156 IQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILF 235 (290)
Q Consensus 156 ~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~ 235 (290)
+..|++++||.+.|.+.+|+ |.+++.+++|++|+.|++....+++ +. . +.+.+++++.
T Consensus 176 i~~pl~flSg~~~P~~~mP~--~lq~i~~~nPlt~~v~~~R~~~~g~-~~------------------~-~~~~~~~~l~ 233 (253)
T TIGR01291 176 VITPMLFLSGVVFPVFQLND--VIQGMTHFLPLAHSIDDIRPVMLGG-PG------------------T-QVGLHLGALC 233 (253)
T ss_pred HHHHHHHHHHHhcCHHhChH--HHHHHHHHCcHHHHHHHHHHHHhCC-Cc------------------H-HHHHHHHHHH
Confidence 99999999999999999998 5455999999999999987654332 11 1 2567889999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 022888 236 GMVVFYRLVFLGIIKTV 252 (290)
Q Consensus 236 ~~~v~~~~l~~~~l~~~ 252 (290)
++.+++..++...+|++
T Consensus 234 ~~~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 234 LYAVVPFFISAALLRRR 250 (253)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99998888887766643
No 14
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.66 E-value=2.1e-15 Score=127.99 Aligned_cols=157 Identities=14% Similarity=0.059 Sum_probs=127.8
Q ss_pred HHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Q 022888 70 RERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTG 149 (290)
Q Consensus 70 rE~~~g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a 149 (290)
|++.+.. +.+.++++|.+...+..+++.++...+.+++.|++++ ++..+++.+.+..+++.++|.+++...++...+
T Consensus 51 ~~~~~p~-~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~ 127 (208)
T TIGR03062 51 RALPKSA-RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF 127 (208)
T ss_pred cccccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH
Confidence 3344444 7889999999999999999999999999998898753 677888888999999999999999999876543
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhccccCccchh
Q 022888 150 IITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWV 229 (290)
Q Consensus 150 ~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~ 229 (290)
+......++++++|.+.|.+++|+ +++ |+++++|.+|+.+++....++|. . .+.|.
T Consensus 128 --~~~~~~~~~~~~sG~~~P~~~~P~-~~~-~i~~~~P~t~~~~~~r~~~~~~~-~-------------------~~~~~ 183 (208)
T TIGR03062 128 --LALVLLVLQLGSSGGTFPIELLPA-FFQ-AIHPFLPMTYSVNGLRQLISGGN-D-------------------GTLWQ 183 (208)
T ss_pred --HHHHHHHHHHccCCCccchhhCHH-HHH-HhhhhCcHHHHHHHHHHHHhCCc-H-------------------HHHHH
Confidence 444455677778999999999998 445 69999999999999976665432 1 13788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 022888 230 DLAILFGMVVFYRLVFLGIIKTVE 253 (290)
Q Consensus 230 ~~~iL~~~~v~~~~l~~~~l~~~~ 253 (290)
++++|+++.+++..++....|+++
T Consensus 184 ~~~~L~~~~~v~~~la~~~~~~~~ 207 (208)
T TIGR03062 184 AVAVLLLILVVFLALSLLSARRKR 207 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999888777655
No 15
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.63 E-value=1.3e-13 Score=120.46 Aligned_cols=221 Identities=10% Similarity=0.019 Sum_probs=154.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhCC-CC------Ch-hhH--HHhHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHH
Q 022888 2 YRDLGYYWFRLGVYVLLGIGLATVFSNL-GT------DN-NSI--QARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERE 71 (290)
Q Consensus 2 ~R~~~~~~~~~~~~~~~~li~G~~f~~~-~~------~~-~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~er~v~~rE 71 (290)
.|||..+...+++|++..+++|.+|... +. +. .+. .-..|++.+......+.. .......+|+...++-
T Consensus 16 ~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~-~~~~~~~r~~g~~~~l 94 (253)
T TIGR03861 16 VQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQS-SLSMVYDREMGSMRVL 94 (253)
T ss_pred HHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHh-hhHhHHhHhcCHHHHH
Confidence 6999999999999999999999998542 11 00 011 111233333222222221 1111223444456666
Q ss_pred HhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 022888 72 RLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGII 151 (290)
Q Consensus 72 ~~~g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~ 151 (290)
+.... ++..+.++|.+.+....+++.++...+.+. .|.+.+..++......+.+..++..++|++++.++++.+.+..
T Consensus 95 ~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~ 172 (253)
T TIGR03861 95 LTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALGLALSNLIRQLENFAG 172 (253)
T ss_pred hhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 66666 899999999999998888887766655543 4665554445555556666778889999999999999888888
Q ss_pred HHHHHHHHHHHhcccccCCCCC---CcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhccccCccch
Q 022888 152 TGAGIQGLMILGGGFFRLPNDL---PHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKW 228 (290)
Q Consensus 152 i~~~~~~~~~l~sG~~~~~~~~---p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~ 228 (290)
+.+.+..+++++||.+.|.+.+ |+ |.+|+.+++|++|..|++.....++ . .|
T Consensus 173 i~~~~~~~l~flSgi~~p~~~~~~~p~--~l~~i~~~nPl~~~i~~~R~~~~g~----------------------~-~~ 227 (253)
T TIGR03861 173 VMNFVIFPMFFLSSALYPLWKMQEAST--WLYWICALNPFTHAVELVRFALYGQ----------------------L-NL 227 (253)
T ss_pred HHHHHHHHHHHHhhHhhhhhhcccccH--HHHHHHHhCcHHHHHHHHHHHHhCC----------------------c-ch
Confidence 8888999999999999999877 55 5556999999999999997443211 1 35
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 022888 229 VDLAILFGMVVFYRLVFLGIIK 250 (290)
Q Consensus 229 ~~~~iL~~~~v~~~~l~~~~l~ 250 (290)
.+++++.++.+++..++....|
T Consensus 228 ~~~~~~~~~~~v~~~~~~~~fr 249 (253)
T TIGR03861 228 PALGWTLGATTLFTLLAFWGFD 249 (253)
T ss_pred hHHHHHHHHHHHHHHHHHHHhh
Confidence 5667888888888877766554
No 16
>PRK15066 inner membrane transport permease; Provisional
Probab=99.60 E-value=5.3e-13 Score=116.95 Aligned_cols=164 Identities=13% Similarity=0.116 Sum_probs=123.3
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Q 022888 68 FERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYL 147 (290)
Q Consensus 68 ~~rE~~~g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~ 147 (290)
.+|-+.+.. ++..+.+++.+......+++.++...+.....|.++. ........+++........|.+++.+.++.+
T Consensus 93 ~~~l~vtp~-~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~ 169 (257)
T PRK15066 93 IEELLVSPV-PNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLINAVFAKSFD 169 (257)
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 334444555 8999999999998888777777666666655566543 3333444444444545556899998888888
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhccccCccc
Q 022888 148 TGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSK 227 (290)
Q Consensus 148 ~a~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~ 227 (290)
....+.+.+..+++++||.+.|.+++|+ |.+++.+++|++|..|++....+.+. +.+.
T Consensus 170 ~~~~i~~~~~~pl~flSgi~~p~~~lP~--~l~~i~~~nPlt~~v~~~R~~~~g~~--------------------~~~~ 227 (257)
T PRK15066 170 DISIIPTFVLTPLTYLGGVFYSISLLPP--FWQGVSKLNPIVYMVNAFRYGFLGIS--------------------DVPL 227 (257)
T ss_pred HHHHHHHHHHHHHHHHcchhccHHhChH--HHHHHHHHCcHHHHHHHHHHHHcCCC--------------------CccH
Confidence 8888999999999999999999999998 55569999999999999976544221 1126
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 022888 228 WVDLAILFGMVVFYRLVFLGIIKTVEKMK 256 (290)
Q Consensus 228 ~~~~~iL~~~~v~~~~l~~~~l~~~~~~~ 256 (290)
|.++++++++.+++..++....|+.++.|
T Consensus 228 ~~~l~~l~~~~~v~~~la~~~~~r~~~~~ 256 (257)
T PRK15066 228 WLAFAVLLVFIVVLYLLAWYLLERGRGLR 256 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 78999999999999999988777665544
No 17
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=99.39 E-value=7e-12 Score=101.14 Aligned_cols=132 Identities=11% Similarity=-0.023 Sum_probs=102.7
Q ss_pred hhhhhHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHH---HHHHHHHHHHHHHHH
Q 022888 60 SFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYF---VLLLFACMLLVESLM 136 (290)
Q Consensus 60 ~~~~er~v~~rE~~~g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~---~l~~~l~~~~~~~lg 136 (290)
..-+|+..++|-+.+.. ++.+++++|.+......+++..+...+.+. .|++.+. .+... .++..+.......+|
T Consensus 13 ~~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~-~~~~~~~~~~~~~l~~~~f~~l~ 89 (152)
T TIGR01248 13 TIDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRN-GVAAALLFLLIPSIFGIAFAALV 89 (152)
T ss_pred HHHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778889998888 999999999999999999998888888864 4887653 33333 333344555666666
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHh
Q 022888 137 MIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFK 197 (290)
Q Consensus 137 ~~is~~~~~~~~a~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~ 197 (290)
..++...++++..+ ..+.+.+|+.++||.+.|.++||+ |.+|+.+++|++|+.+++..
T Consensus 90 ~~~a~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~--wlq~ia~~~Plt~~~~~~R~ 147 (152)
T TIGR01248 90 MAMALRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPD--WAQPLIAHQPISPAIEACAD 147 (152)
T ss_pred HHHHHHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcH--HHHHHHhhCCccHHHHHHHH
Confidence 77766666665444 457788999999999999999998 77779999999999999874
No 18
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=99.35 E-value=2.4e-10 Score=100.34 Aligned_cols=169 Identities=19% Similarity=0.251 Sum_probs=128.1
Q ss_pred hhHHHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 022888 63 EDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVA-S 141 (290)
Q Consensus 63 ~er~v~~rE~~~g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is-~ 141 (290)
+|+..+.|-..+.. +...+++++.+.......+...+...+..+..|.. ...++.....++.+..+...++|.+++ .
T Consensus 115 ~~~g~~~~~~~sp~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 192 (286)
T COG0842 115 REFGTLERLLVSPV-SRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTF 192 (286)
T ss_pred HhhCcHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666 54666777777766666666555555666666643 445677777788888888889999766 3
Q ss_pred hccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhcc
Q 022888 142 LVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQL 221 (290)
Q Consensus 142 ~~~~~~~a~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~ 221 (290)
..++.+.+..+++.+..++.++||.+.|.+.+|+ |.+++.+++|.+|+.+++......+...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~--~~~~i~~~~P~t~~~~~~~~~~~~~~~~---------------- 254 (286)
T COG0842 193 AKSQLQCASAVGNLLILPLGFLSGVFFPLELLPA--WLQGISYINPLTYAIDALRYVYLGGWRN---------------- 254 (286)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHccccCchhhhHH--HHHHHHHHccHHHHHHHHHHHHhCCCch----------------
Confidence 5567778888888999999999999999999998 5556999999999999998666554332
Q ss_pred ccCccchhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 022888 222 QMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEK 254 (290)
Q Consensus 222 ~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~~ 254 (290)
+ +.+.++++++++.+++.+++...+|++++
T Consensus 255 --~-~~~~~~~~l~~~~~v~~~~~~~~~~~~~~ 284 (286)
T COG0842 255 --D-GIWISLLILLLFAVVFLLLGLLLLRRRRK 284 (286)
T ss_pred --h-hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1 27889999999999999999887777654
No 19
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.88 E-value=9e-07 Score=77.54 Aligned_cols=152 Identities=14% Similarity=0.084 Sum_probs=116.1
Q ss_pred chHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 022888 78 GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQ 157 (290)
Q Consensus 78 ~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~ 157 (290)
++..+.+++++.++....+..++.....-+ .|..+ ..++......+.+..+.+.++|++++.+.-...--..+...+.
T Consensus 106 p~~~~~~~~~~~~~~~~~i~~iiil~~~i~-~~~~~-s~~~l~~~~~l~~l~l~~~g~~l~~a~l~v~fRD~~~i~~~v~ 183 (263)
T COG1682 106 PPLILPVARTLSRLFNFLIHLIIILIFLII-LGVEP-SWHWLLLLPALLLLILFSVGLGLILASLGVRFRDLGQILGVVL 183 (263)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHH
Confidence 889999999999988777777655544444 34433 4577777788888888899999999998766655566777778
Q ss_pred HHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhccccCccchhhHHHHHHH
Q 022888 158 GLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGM 237 (290)
Q Consensus 158 ~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~ 237 (290)
.+++..+|.+.|.+.+|+ .+++ +.++||+.+..|......+.|... .+.+....+++
T Consensus 184 ~~~f~~sPIi~~~~~~p~-~~~~-~~~~NP~~~iie~~R~~~~~~~~~---------------------~~~~~~~~~~~ 240 (263)
T COG1682 184 QLLFFLSPIIYPVSNLPE-QLRE-LVLLNPLTHIIESFRAPLLGGDVP---------------------DLHLLVYILLL 240 (263)
T ss_pred HHHHHhCceeeehhhccH-HHHH-HHHHCcHHHHHHHHHHHHhCCCcc---------------------cHHHHHHHHHH
Confidence 889999999999999998 4665 999999999999998777655321 23455666667
Q ss_pred HHHHHHHHHHHHHhhhh
Q 022888 238 VVFYRLVFLGIIKTVEK 254 (290)
Q Consensus 238 ~v~~~~l~~~~l~~~~~ 254 (290)
.++...+++...++.+|
T Consensus 241 ~li~l~vg~~~~~~~~~ 257 (263)
T COG1682 241 TLILLFVGLLLFRKFRK 257 (263)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777777777776554
No 20
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.78 E-value=3.1e-06 Score=73.40 Aligned_cols=152 Identities=16% Similarity=0.120 Sum_probs=96.0
Q ss_pred HHHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHH---hhhhHHHhcCccc---cchhHHHHHHHHHHHHHHHH
Q 022888 67 VFERERLNGHY--------GATAFVFGNTFSALPYLALISL---IPGAIVYYLPGLH---EGYQHFIYFVLLLFACMLLV 132 (290)
Q Consensus 67 v~~rE~~~g~Y--------~~~~y~lak~l~~~~~~~~~~~---i~~~i~y~~~g~~---~~~~~f~~~~l~~~l~~~~~ 132 (290)
.+.|||++|.. ++.+++++|.+.......+... ++..... ..|.+ .+.+.+....+..++...+.
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIY-QLGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 34566666664 7999999999998755443332 1221221 12222 24556666666667777899
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCC--CcccccccccccCHHHHHHHHhHhhhcCCCcccCCCC
Q 022888 133 ESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDL--PHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLD 210 (290)
Q Consensus 133 ~~lg~~is~~~~~~~~a~~i~~~~~~~~~l~sG~~~~~~~~--p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~ 210 (290)
.++|.++|++++|+..|..++......+. .|... ..++ |+ |.+|+.++||.+|..+.. +| .+
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~~l~--~~~~~-l~~~~~~~--~~~~l~~~sp~~~~~~~~-----~g-~i----- 214 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCFLFY--FGFDG-LASLLWGG--SAYTISELGLSYHYESIS-----RG-VI----- 214 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHH--HHHHH-Hhhhcchh--HHHHHHHcCHHHHHHHHH-----cC-cc-----
Confidence 99999999999998887665554433322 22221 2333 54 556799999987765544 11 11
Q ss_pred HHHHHhhhhccccCccchhhHHHHHHHHHHHHHHHHHHHHh
Q 022888 211 GEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKT 251 (290)
Q Consensus 211 g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~ 251 (290)
.+.|+...+.+++++..++...+++
T Consensus 215 ----------------~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 215 ----------------DSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred ----------------cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467888888888888888776554
No 21
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=98.67 E-value=3.6e-09 Score=95.02 Aligned_cols=157 Identities=23% Similarity=0.267 Sum_probs=0.0
Q ss_pred hhhhH--HHHHHHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCc---cccchhHHHHHHHHHHHHHHHHHHH
Q 022888 61 FVEDM--KVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPG---LHEGYQHFIYFVLLLFACMLLVESL 135 (290)
Q Consensus 61 ~~~er--~v~~rE~~~g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g---~~~~~~~f~~~~l~~~l~~~~~~~l 135 (290)
..+|| ++..|-+.+|. ++..|+++|.+..+...+++.++...+ ..| ++. .++...++.+++..++..++
T Consensus 182 i~~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~ 255 (344)
T PF12698_consen 182 IVEEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPF--GNFLLLLLLLLLFSLAFISF 255 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCcc--cchHHHHHHHHHHHHHHHHH
Confidence 34444 44556667777 999999999999999999888776664 444 433 36677778889999999999
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHH
Q 022888 136 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVL 215 (290)
Q Consensus 136 g~~is~~~~~~~~a~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L 215 (290)
|.+++.++++...+..++.++..+...++|...|.+++|+ +++ ++.++.|..|..+++.....++ .
T Consensus 256 ~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~i~~~~P~~~~~~~~~~~~~~~--~---------- 321 (344)
T PF12698_consen 256 GFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPS-FLQ-WISSFLPFYWFIQGLRNIIYGD--W---------- 321 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH-HHH-HHHHHhhHHHHHHHHHHHHHhc--H----------
Confidence 9999999999999888877777767777777788899998 455 4899999999888875443211 1
Q ss_pred hhhhccccCccchhhHHHHHHHHHHHHHHHH
Q 022888 216 RDKWQLQMGYSKWVDLAILFGMVVFYRLVFL 246 (290)
Q Consensus 216 ~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~ 246 (290)
. +.|.++++++++.+++.++++
T Consensus 322 --------~-~~~~~~~~l~~~~~v~~~l~~ 343 (344)
T PF12698_consen 322 --------S-EIWISLIILLLFAVVYLLLAI 343 (344)
T ss_dssp -------------------------------
T ss_pred --------H-HHHHHHHHHHHHHHHHHHHHh
Confidence 1 267788888888888877664
No 22
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.52 E-value=1.6e-07 Score=70.43 Aligned_cols=50 Identities=16% Similarity=0.371 Sum_probs=45.6
Q ss_pred CCHHHHHhhhhccccCccchhhHHHHHHHHHHHHHHHHHHHHhhhhcccch
Q 022888 209 LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVV 259 (290)
Q Consensus 209 ~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~~~~~~~ 259 (290)
++|++||+..|+++.+| .|+|++|+++|+++|.++.++++.+.+..+.+.
T Consensus 31 V~G~~YL~~~y~y~~sh-~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~~ 80 (103)
T PF06422_consen 31 VSGDDYLEESYGYSYSH-RWRNFGILIAFWIFFIVLTLLATEFIKFEKSGG 80 (103)
T ss_pred EeHHHHHhhhccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 78999999779999998 999999999999999999999999988777653
No 23
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=98.48 E-value=5.5e-05 Score=66.46 Aligned_cols=167 Identities=16% Similarity=0.249 Sum_probs=97.5
Q ss_pred HHHHHHhCCC--------CchHHHHHHHHHHHhhHHHH---HHHhhh---hHHHhcCccccchhHHHHHHHHHHHHHH--
Q 022888 67 VFERERLNGH--------YGATAFVFGNTFSALPYLAL---ISLIPG---AIVYYLPGLHEGYQHFIYFVLLLFACML-- 130 (290)
Q Consensus 67 v~~rE~~~g~--------Y~~~~y~lak~l~~~~~~~~---~~~i~~---~i~y~~~g~~~~~~~f~~~~l~~~l~~~-- 130 (290)
.+.+|+++|. .++..++++|.+......++ ...+-. .......|.+.+..++....+......+
T Consensus 89 ~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (277)
T PF12679_consen 89 LIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAV 168 (277)
T ss_pred HHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 4566777776 48999999999998876332 211111 1122224455556665555544444444
Q ss_pred -HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhccccc-CCCCCCccccc--ccccccCHHHHHHHHhHhhhcCCCccc
Q 022888 131 -LVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFR-LPNDLPHPFWK--YPLYYIAFHKYAYQGMFKNEFEGLKFD 206 (290)
Q Consensus 131 -~~~~lg~~is~~~~~~~~a~~i~~~~~~~~~l~sG~~~-~~~~~p~~~w~--~~l~~isP~~y~~~~l~~~~~~~~~~~ 206 (290)
+..+++.++|++++|...|...+..+............ ..++.....|. ..+.+++|..+ ++.+.....++.+.
T Consensus 169 ~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~- 246 (277)
T PF12679_consen 169 LVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSP-FNLLIGSILGGGFV- 246 (277)
T ss_pred HHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHH-HHHHHHHhhccccc-
Confidence 56999999999999988888777765555443333332 22222110011 11567777543 33333222222110
Q ss_pred CCCCHHHHHhhhhccccCccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 022888 207 NNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTV 252 (290)
Q Consensus 207 c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~~ 252 (290)
+ ...|.++++++++.+++..+++..+++|
T Consensus 247 ---------------~--~~~~~~~~~~~~~~~v~l~la~~~F~rr 275 (277)
T PF12679_consen 247 ---------------W--LSTWPSLLILLAYTLVFLALAYYRFQRR 275 (277)
T ss_pred ---------------h--hHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 1378899999999999999998766654
No 24
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=98.46 E-value=6.4e-05 Score=66.11 Aligned_cols=110 Identities=15% Similarity=0.024 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhc
Q 022888 121 FVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEF 200 (290)
Q Consensus 121 ~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~ 200 (290)
.....++..+.+.++|+++|.+..-......+.+.+..+++..||.+.|.+.+|+ .+++ +-+.||+.+..|+.....+
T Consensus 151 ~~~~~ll~~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~-~~~~-il~~NPl~~~ie~~R~~~~ 228 (264)
T PRK15176 151 IFEGMVIAWLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPY-SLLS-IFSWNPLLHANEIVREGMF 228 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcH-HHHH-HHHHCcHHHHHHHHHHHHh
Confidence 3344445666677888887776543333445566778888899999999999998 3554 8899999999999987776
Q ss_pred CCCcccCCCCHHHHHhhhhccccCccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 022888 201 EGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVE 253 (290)
Q Consensus 201 ~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~ 253 (290)
+|..- .+.+....+++.++..++++...|+.|
T Consensus 229 ~~~~~---------------------~~~~~~~~~~~~~~~l~~G~~~~~~~~ 260 (264)
T PRK15176 229 EGYHS---------------------LYLEPFYPLAFSATLFLAGLIFHLICD 260 (264)
T ss_pred cCcCc---------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55311 233556777888888778877666543
No 25
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=97.66 E-value=0.02 Score=50.37 Aligned_cols=173 Identities=16% Similarity=0.168 Sum_probs=111.5
Q ss_pred HHHHHHhCCC--------CchHHHHHHHHHHHhhHHHHHHHhhh---hHHHhcCccccc---hhHHHHHHHHHHHHHHHH
Q 022888 67 VFERERLNGH--------YGATAFVFGNTFSALPYLALISLIPG---AIVYYLPGLHEG---YQHFIYFVLLLFACMLLV 132 (290)
Q Consensus 67 v~~rE~~~g~--------Y~~~~y~lak~l~~~~~~~~~~~i~~---~i~y~~~g~~~~---~~~f~~~~l~~~l~~~~~ 132 (290)
++.+|+++|. .++..-+.+|.+..+....+..++.. .......|..++ ......+.....+.....
T Consensus 82 ~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (278)
T COG1277 82 LISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGLVL 161 (278)
T ss_pred hhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHH
Confidence 3556777776 47888999999998766666555444 223334444443 334667778888889999
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccC------CCCCCcccccccccccCHHHHHHHHhHhhhcCC-Ccc
Q 022888 133 ESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRL------PNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEG-LKF 205 (290)
Q Consensus 133 ~~lg~~is~~~~~~~~a~~i~~~~~~~~~l~sG~~~~------~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~-~~~ 205 (290)
.+.+.+++...++...+...+..+.....+..+.... ....| ....+...+|.++..+......... ...
T Consensus 162 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 238 (278)
T COG1277 162 LSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAP---TLNTLSLLLPLYLLAELAFTILLQSGFSD 238 (278)
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh---hhHHHhccCHHHHHHHHhhhhcccccccc
Confidence 9999999999999888887777765555544443321 11111 1123788889888877765444321 000
Q ss_pred cCCCCHHHHHhhhhcccc-CccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 022888 206 DNNLDGEQVLRDKWQLQM-GYSKWVDLAILFGMVVFYRLVFLGIIKTVE 253 (290)
Q Consensus 206 ~c~~~g~~~L~~~~~~~~-~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~ 253 (290)
++ .+... ....|.++.+++++.+++..++++..++++
T Consensus 239 ----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~d 276 (278)
T COG1277 239 ----SI-------LTLNESLLLAWFNILILIIYILIFLSIAYLIFKRRD 276 (278)
T ss_pred ----cc-------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 00 00111 113788999999999999999998777654
No 26
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=97.64 E-value=0.035 Score=48.29 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=47.9
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHhhhhHH-----HhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 022888 77 YGATAFVFGNTFSALPYLALISLIPGAIV-----YYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPN 145 (290)
Q Consensus 77 Y~~~~y~lak~l~~~~~~~~~~~i~~~i~-----y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~ 145 (290)
.+...+++||.+......++..++..... +...+-+.+...+....+.+++.++....+.+.++....+
T Consensus 85 ~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~~l~l~ls~~~g~ 158 (248)
T TIGR03733 85 KSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYIIHLFVSFAFGM 158 (248)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 37889999999987766666544321221 1221223355677777788888999999999999998875
No 27
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=97.55 E-value=0.0049 Score=57.19 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=96.7
Q ss_pred chHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCcccc--ch--hHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 022888 78 GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHE--GY--QHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITG 153 (290)
Q Consensus 78 ~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~--~~--~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~ 153 (290)
++..+++-|.+......++.++.++.+. ...+++. .. +.|+.+|...++...+.....-.+..+.+.+- ..+.
T Consensus 240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i~~~~--~~~~ 316 (382)
T PF12051_consen 240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISIIGPPF--MPFW 316 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccch--HHHH
Confidence 8999999999999998888888888777 4455543 22 55888888777766665444444444444333 3344
Q ss_pred HHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhccccCccchhhHHH
Q 022888 154 AGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAI 233 (290)
Q Consensus 154 ~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~i 233 (290)
.+..+.+.+-+ -+.|.+-.|. |.+| .+-. |++.+++++....|++.. . ...+|+++
T Consensus 317 ll~wvi~nv~~-~~~P~el~p~-fyr~-gya~-P~~n~~~~~r~I~fd~~~-------------------~-~lg~n~gi 372 (382)
T PF12051_consen 317 LLFWVILNVSS-TFYPLELSPG-FYRY-GYAM-PMHNIYEGLRVIFFDTCK-------------------G-QLGRNYGI 372 (382)
T ss_pred HHHHHHHhccc-ccCChhhCcc-HHHH-hhhh-hHHHHHHHHHHheeCCCc-------------------c-cccchHHH
Confidence 44555566656 4569999998 7885 5555 999999999888665432 1 37789999
Q ss_pred HHHHHHHH
Q 022888 234 LFGMVVFY 241 (290)
Q Consensus 234 L~~~~v~~ 241 (290)
|++|+++-
T Consensus 373 l~aw~~v~ 380 (382)
T PF12051_consen 373 LFAWIVVN 380 (382)
T ss_pred HHHHHHHH
Confidence 99998764
No 28
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=97.41 E-value=0.015 Score=49.84 Aligned_cols=162 Identities=15% Similarity=0.060 Sum_probs=89.7
Q ss_pred HHHHHhCCC-----CchHHHHHHHHHHHhhHHHHH---HHhhhhHHHhcCcc----ccchhHHHHHHHHHHHHHHHHHHH
Q 022888 68 FERERLNGH-----YGATAFVFGNTFSALPYLALI---SLIPGAIVYYLPGL----HEGYQHFIYFVLLLFACMLLVESL 135 (290)
Q Consensus 68 ~~rE~~~g~-----Y~~~~y~lak~l~~~~~~~~~---~~i~~~i~y~~~g~----~~~~~~f~~~~l~~~l~~~~~~~l 135 (290)
|.+|...|. -+|..|+..+.-.+.+..+.. -.+..+..+.+.+- -++......+.+.+.+....--..
T Consensus 84 f~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~~~~l~~~~l~la~~~~~~F~i 163 (268)
T COG4587 84 FEKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLSPWTLYLFVLALALLFLLRFLI 163 (268)
T ss_pred HHHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554 356677766666655544433 11222222222221 123444444444333332222233
Q ss_pred HHHHHHhc-cchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHH
Q 022888 136 MMIVASLV-PNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQV 214 (290)
Q Consensus 136 g~~is~~~-~~~~~a~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~ 214 (290)
-..+++.+ .| +.|+.+.........++||.+.|.+-.|+ |.+-+--..|..|....=......
T Consensus 164 ~f~~~~~aFwt-~~as~l~~~~~~l~~f~sG~l~PL~~fP~--~v~~il~ftPFpy~~y~P~~llvG------------- 227 (268)
T COG4587 164 QFTFGLFAFWT-ERASSLGKFWWLLYAFLSGSLAPLAFFPD--WVRAILAFTPFPYLLYTPVMLLVG------------- 227 (268)
T ss_pred HHHHHHHHhhc-cchhhHHHHHHHHHHHhccccchHHhChH--HHHHHHHhCCchhhhccHHHHHhc-------------
Confidence 33333332 44 34667788888889999999999999998 443366677777765432211111
Q ss_pred HhhhhccccCccchhhHHHHHHHHHHHHHHHHHHHHh
Q 022888 215 LRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKT 251 (290)
Q Consensus 215 L~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~ 251 (290)
..+.+. .++++++.++|..++-.+.-...|+
T Consensus 228 -----k~s~~~-il~al~v~~~Wl~im~~l~~~lWrr 258 (268)
T COG4587 228 -----KYSGAQ-ILKALLVQIGWLLIMWLLSRWLWRR 258 (268)
T ss_pred -----cccHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233 8899999999999988877665443
No 29
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=97.35 E-value=0.017 Score=49.14 Aligned_cols=147 Identities=18% Similarity=0.191 Sum_probs=89.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHH-HHHHHHhhhchhhhhhhHHHHHHHHhCCCC---
Q 022888 2 YRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVA-SYLTFMTIGGFPSFVEDMKVFERERLNGHY--- 77 (290)
Q Consensus 2 ~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y--- 77 (290)
+|++.....-.........++... .+.+.+...+....+.+++ .+.+..+ -.+.|.+|+++|..
T Consensus 13 ~r~~~~~~~~~lf~l~~i~if~~a---l~~~~~~l~~~~~gllWi~~lfa~~l~---------~~r~f~~E~e~G~L~~l 80 (215)
T PF03379_consen 13 FRSKEGLLSMLLFFLLVIVIFSFA---LGPDPDLLARVAPGLLWIALLFASLLG---------LNRSFAREYEDGTLEQL 80 (215)
T ss_pred HccccchHHHHHHHHHHHHHHHhh---cCCchhHHHHHhHHHHHHHHHHHHHHH---------hhHhHHHHHhCCcHHHH
Confidence 466665555555544444444433 3333333333333344443 3333222 12247788888873
Q ss_pred -----chHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 022888 78 -----GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIIT 152 (290)
Q Consensus 78 -----~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i 152 (290)
++..++++|.+.......+..++...+...+.|.+ ..+...+.+.+.+.+......|.+.++++-+.......
T Consensus 81 ~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~--~~~~~~~~~~l~lgt~gl~~igtl~aal~~~~r~~~~L 158 (215)
T PF03379_consen 81 LLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLP--ISSWPLLLLSLLLGTLGLAAIGTLLAALAAGARGREIL 158 (215)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCHH
Confidence 57889999999998877777777666666677775 35667777788888888888898888876554444455
Q ss_pred HHHHHHHHHH
Q 022888 153 GAGIQGLMIL 162 (290)
Q Consensus 153 ~~~~~~~~~l 162 (290)
.++...|+.+
T Consensus 159 l~lL~lPl~i 168 (215)
T PF03379_consen 159 LPLLLLPLLI 168 (215)
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 30
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=97.22 E-value=0.034 Score=47.11 Aligned_cols=145 Identities=12% Similarity=0.090 Sum_probs=85.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHH-HHHHHHhhhchhhhhhhHHHHHHHHhCCCC---
Q 022888 2 YRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVA-SYLTFMTIGGFPSFVEDMKVFERERLNGHY--- 77 (290)
Q Consensus 2 ~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y--- 77 (290)
+|++.....-++..++...++.. ..+.+.+..++....+++++ .+....+ -.+.|.+|+++|..
T Consensus 10 ~r~~~~~~~~llF~l~vi~lf~l---a~gp~~~~l~~~apgilWva~lfa~ll~---------l~rlF~~d~e~g~Le~l 77 (211)
T TIGR01190 10 FRAGGGILNPLWFFLIVVTLFPF---GVGPELKLLSRIAPGIVWVGALLSSLLS---------LDRLFRDDFEDGSLDLL 77 (211)
T ss_pred HcccchHHHHHHHHHHHHHHHHh---hcCCcHHHHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHhCCcHHHH
Confidence 34444443333333333333322 33444444444444444443 3333322 22367889999873
Q ss_pred -----chHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 022888 78 -----GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIIT 152 (290)
Q Consensus 78 -----~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i 152 (290)
++...+++|.++......+.-.+..-..-.+.|.+. .+.....+.+.+.+.....+|.+.++++-+.......
T Consensus 78 ll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~--~~~~~l~l~LllGt~~Ls~igtl~aALt~g~r~~~~L 155 (211)
T TIGR01190 78 MLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDV--PAWGALALTLLLGTPALSFLGAIGAALTVGLKRGGLL 155 (211)
T ss_pred HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Confidence 688899999999987777666666666556777754 3456777888888888888888888876543333333
Q ss_pred HHHHHHHH
Q 022888 153 GAGIQGLM 160 (290)
Q Consensus 153 ~~~~~~~~ 160 (290)
.++...|+
T Consensus 156 l~lL~lPl 163 (211)
T TIGR01190 156 LSLLVLPL 163 (211)
T ss_pred HHHHHHHH
Confidence 33433333
No 31
>COG1511 Predicted membrane protein [Function unknown]
Probab=96.98 E-value=0.0089 Score=60.54 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=108.1
Q ss_pred HhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 022888 72 RLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGII 151 (290)
Q Consensus 72 ~~~g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~ 151 (290)
...+.+....|++++.+..+.....+..+.....+++.|+.. .+-+.+++..+...+++..+-..+..++.++. ..
T Consensus 610 ~~~~~~~~~~~~~~~~~~~i~~~~~q~~i~~~~~~~~l~~~~--~~~~~~~~~~i~~s~~f~~ii~~lv~~~g~~g--~~ 685 (780)
T COG1511 610 LSDGILNGRVYFFGKNLVFITLGLIQSLIVTLGLVLLLGVEV--KSPLLLVLFAIFSSVAFMIIIYLLVSLFGNPG--KF 685 (780)
T ss_pred ccccccchHHHHHHhhhHHHHHHHHHHHHHHhcCeEEEEecc--CchhHHHHHHHHHHHHHHHHHHHHHHHhCcch--HH
Confidence 677778889999999999999999999888888877777754 34445555555666666666666666666554 44
Q ss_pred HHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhccccCccchhhH
Q 022888 152 TGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDL 231 (290)
Q Consensus 152 i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~ 231 (290)
+..++++.+...+|-..|.+..|. +.+. +...-|++|++..+...... .... ..|.++
T Consensus 686 i~ivllvlq~~~~~G~~pi~~~~~-~~~~-l~~~lp~ty~v~~~r~~~~~-------------------~~~~-~~~~~~ 743 (780)
T COG1511 686 IAIVLLVLQIAGSGGTFPIQLSPS-FFQI-LHPALPLTYAVNGFREVIGG-------------------PIPS-NLWSGL 743 (780)
T ss_pred HHHHHHHHHHhccccccchhccHH-HHHH-HHHhccHHHHHHHhHHhhcc-------------------CchH-HHhhhH
Confidence 666677788888888899999998 6775 99999999997776433211 1112 378888
Q ss_pred HHHHHHHHHHHHHH
Q 022888 232 AILFGMVVFYRLVF 245 (290)
Q Consensus 232 ~iL~~~~v~~~~l~ 245 (290)
+++.++.+++++..
T Consensus 744 ~~~~~~~i~~~~~~ 757 (780)
T COG1511 744 LALIGFLILFIIGG 757 (780)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887743
No 32
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=96.76 E-value=0.003 Score=42.80 Aligned_cols=47 Identities=21% Similarity=0.473 Sum_probs=39.5
Q ss_pred CCHHHHHhhhhccccC-ccchhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 022888 209 LDGEQVLRDKWQLQMG-YSKWVDLAILFGMVVFYRLVFLGIIKTVEKMK 256 (290)
Q Consensus 209 ~~g~~~L~~~~~~~~~-~~~~~~~~iL~~~~v~~~~l~~~~l~~~~~~~ 256 (290)
.-|+++|+. .|+..+ ++.|..+++|++++++|.++..++|.+.+..+
T Consensus 11 tlG~~vL~~-rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~~ 58 (65)
T PF08370_consen 11 TLGVAVLKS-RGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPLG 58 (65)
T ss_pred cHHHHHHHH-cCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 569999999 566544 46899999999999999999999999977543
No 33
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=96.72 E-value=0.038 Score=61.22 Aligned_cols=99 Identities=12% Similarity=-0.009 Sum_probs=72.2
Q ss_pred hchhhhhhhHHHHH--HHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccc--cchhHHHHHHHHHHHHHHH
Q 022888 56 GGFPSFVEDMKVFE--RERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLH--EGYQHFIYFVLLLFACMLL 131 (290)
Q Consensus 56 ~~~~~~~~er~v~~--rE~~~g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~--~~~~~f~~~~l~~~l~~~~ 131 (290)
.-+....+||.-=. -..-+|. ++.+|+++..+.|+..-++..+++.++.+. .+.. .+..++...+++++++.++
T Consensus 1696 sfv~~~V~ER~skaK~lQ~vSGv-~~~~YWls~fl~D~~~y~i~~~~~i~i~~~-f~~~~~~~~~~l~~~~lll~lyG~a 1773 (2272)
T TIGR01257 1696 SFVLYLIQERVNKAKHLQFISGV-SPTTYWLTNFLWDIMNYAVSAGLVVGIFIG-FQKKAYTSPENLPALVALLMLYGWA 1773 (2272)
T ss_pred HHheeeehHHhhhHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhhhcCcchHHHHHHHHHHHHHH
Confidence 33344566766533 3567888 999999999999998887777766655543 2221 1335676777889999999
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHH
Q 022888 132 VESLMMIVASLVPNYLTGIITGAGI 156 (290)
Q Consensus 132 ~~~lg~~is~~~~~~~~a~~i~~~~ 156 (290)
...+.+++|.+++++..|......+
T Consensus 1774 ~ip~tYl~SflF~~~~~A~~~~~~i 1798 (2272)
T TIGR01257 1774 VIPMMYPASFLFDVPSTAYVALSCA 1798 (2272)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHH
Confidence 9999999999999998887654443
No 34
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=96.53 E-value=0.19 Score=56.01 Aligned_cols=144 Identities=8% Similarity=0.040 Sum_probs=96.0
Q ss_pred HHHHHHhhhchhhhhhhHHHHHHHHhCCC-CchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHH
Q 022888 48 SYLTFMTIGGFPSFVEDMKVFERERLNGH-YGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLF 126 (290)
Q Consensus 48 ~~~~~~~~~~~~~~~~er~v~~rE~~~g~-Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~ 126 (290)
+.+.+.....+..+..||+.=.||...-| -+.+.|++|..+..+...++.+++.+++... ..+ ....+++..++.++
T Consensus 661 la~~~~~~~lv~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~~-~~~-~~~s~~~~lfl~~~ 738 (2272)
T TIGR01257 661 LAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIMH-GRI-LHYSDPFILFLFLL 738 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-Cce-eecCChHHHHHHHH
Confidence 33344444666777888888778866544 2789999999999887776665554444321 122 23456778888889
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccc-cCCCCCCcccccccccccCHHHHHHHH
Q 022888 127 ACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFF-RLPNDLPHPFWKYPLYYIAFHKYAYQG 194 (290)
Q Consensus 127 l~~~~~~~lg~~is~~~~~~~~a~~i~~~~~~~~~l~sG~~-~~~~~~p~~~w~~~l~~isP~~y~~~~ 194 (290)
++.++..+++.++|+++.+...|..++.++.....+--.+. .-.+.++. ...+.+.-+||.-.++..
T Consensus 739 ~y~~s~I~~~fliS~fFska~~A~~~~~li~f~~~lp~~~~~~~~~~~~~-~~~~~~sL~sp~af~~g~ 806 (2272)
T TIGR01257 739 AFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTA-DLKTAVSLLSPVAFGFGT 806 (2272)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcccccCH-HHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999999888888766544322211 22344443 223336777787666543
No 35
>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function.
Probab=95.88 E-value=0.97 Score=38.61 Aligned_cols=123 Identities=13% Similarity=0.112 Sum_probs=74.8
Q ss_pred HHHHHhCCCC--------chHHHHHHHHHHH-hhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 022888 68 FERERLNGHY--------GATAFVFGNTFSA-LPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMI 138 (290)
Q Consensus 68 ~~rE~~~g~Y--------~~~~y~lak~l~~-~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~ 138 (290)
+.++-++|.. +...+...+-+.. ....++..++.........+++.+..++..+.+.+.+..+...++..+
T Consensus 54 i~~~I~~G~ld~~LlrPv~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~i~~~~~~~~~~~~~l~~g~li~~~i~~~ 133 (229)
T PF06182_consen 54 ISEDIRTGELDQYLLRPVNYLFYLLFRNLGPSSLGFLIVGIILLIYALIQLGIPWSPLNILLFILSLLLGFLINFSIFFI 133 (229)
T ss_pred HhhhhcCCceeeehhcCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666663 4555555555443 233333444333344444577777888888888888888888888888
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHH
Q 022888 139 VASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQG 194 (290)
Q Consensus 139 is~~~~~~~~a~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~ 194 (290)
++.++==......+. .....+++|...|.+-.|+ +.+..+.++.|..+....
T Consensus 134 ~~~laFw~~~~~~~~---~i~~~l~sg~~~Pl~~fp~-~~~~il~~~lPf~~i~~~ 185 (229)
T PF06182_consen 134 IGLLAFWFTESWGLS---YIFYSLLSGAIYPLSIFPG-WIQFILTFILPFAYISYV 185 (229)
T ss_pred HHHHHHHHhcchHHH---HHHHHHHHHHHccHHHhHH-HHHHHHHHHhhHHHHHHH
Confidence 777542222222222 2334448999999999998 555545555888766543
No 36
>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=95.41 E-value=1.5 Score=41.14 Aligned_cols=77 Identities=18% Similarity=0.109 Sum_probs=51.8
Q ss_pred chHHHHHHHHHHHhhHHHHHHHhhhhHHH---------hcCc--cccchhHHHHHHHHHHHHH-HHHHHHHHHHHHhccc
Q 022888 78 GATAFVFGNTFSALPYLALISLIPGAIVY---------YLPG--LHEGYQHFIYFVLLLFACM-LLVESLMMIVASLVPN 145 (290)
Q Consensus 78 ~~~~y~lak~l~~~~~~~~~~~i~~~i~y---------~~~g--~~~~~~~f~~~~l~~~l~~-~~~~~lg~~is~~~~~ 145 (290)
|+..++.+|++......+++..++....+ ...+ +......+..+.+...+.. +...+++.+++..+++
T Consensus 228 Sr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~l~a~l~~~a~~ 307 (407)
T COG1668 228 SRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAGTGLALLPAYLLLFALSLFLLGLLLYAALAAFLGAMAGS 307 (407)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999888666655552 1111 1223334444444444444 4455588999999999
Q ss_pred hHHHHHHHH
Q 022888 146 YLTGIITGA 154 (290)
Q Consensus 146 ~~~a~~i~~ 154 (290)
.+.|+....
T Consensus 308 ~k~aq~~~~ 316 (407)
T COG1668 308 IKEAQTLIS 316 (407)
T ss_pred HHHHHHHhh
Confidence 988887666
No 37
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=95.06 E-value=1.6 Score=35.95 Aligned_cols=87 Identities=26% Similarity=0.365 Sum_probs=48.9
Q ss_pred HHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhhhHH---HhcCcc-ccchhH---H-HHHHHHHHHHHHH
Q 022888 68 FERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIV---YYLPGL-HEGYQH---F-IYFVLLLFACMLL 131 (290)
Q Consensus 68 ~~rE~~~g~Y--------~~~~y~lak~l~~~~~~~~~~~i~~~i~---y~~~g~-~~~~~~---f-~~~~l~~~l~~~~ 131 (290)
+.+|+++|.+ ++..++.+|.+.......+..++...+. ..+.+. +.+... . ....+...+....
T Consensus 70 ~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (232)
T PF12730_consen 70 FSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLSLF 149 (232)
T ss_pred HHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHHHH
Confidence 4556666653 7999999999998776666555432222 222332 223222 2 2333444444444
Q ss_pred HHHHHHHHHHhccchHHHHHHHHH
Q 022888 132 VESLMMIVASLVPNYLTGIITGAG 155 (290)
Q Consensus 132 ~~~lg~~is~~~~~~~~a~~i~~~ 155 (290)
...+ .+++...+|...+..+...
T Consensus 150 ~~~~-~~i~~~~~~~~~~i~~~~~ 172 (232)
T PF12730_consen 150 ISLL-LFISSLFRNSIVAIIISIL 172 (232)
T ss_pred HHHH-HHHHHHHhhHHHHHHHHHH
Confidence 5555 7888888886665443333
No 38
>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=3 Score=35.03 Aligned_cols=93 Identities=15% Similarity=0.133 Sum_probs=67.9
Q ss_pred HHHHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 022888 67 VFERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMI 138 (290)
Q Consensus 67 v~~rE~~~g~Y--------~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~ 138 (290)
.|++|++||.- ....-+++|+++....+.+.-++..-+.+.+.+.+ ...+....+++.+.+.....+|..
T Consensus 70 lF~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~~~--~~~~~~~~ltLllGtp~ls~~ga~ 147 (221)
T COG2386 70 LFRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLNMD--VGALGALALTLLLGTPALSFLGAV 147 (221)
T ss_pred HHHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCC--HhHHHHHHHHHHhcchHHHHHHHH
Confidence 68999999974 45666889999998877777777777777778775 466778888888888888888888
Q ss_pred HHHhccchHHHHHHHHHHHHHHH
Q 022888 139 VASLVPNYLTGIITGAGIQGLMI 161 (290)
Q Consensus 139 is~~~~~~~~a~~i~~~~~~~~~ 161 (290)
-++++-+....-...+++..|..
T Consensus 148 gaALtv~lrrgglLl~vlvlPl~ 170 (221)
T COG2386 148 GAALTVGLRRGGLLLSVLVLPLI 170 (221)
T ss_pred HHHHHhcCccCCchhhHHHHHHH
Confidence 87776555544444444444443
No 39
>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.61 E-value=4.1 Score=34.75 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=91.3
Q ss_pred HHHHhCCC--------CchHHHHHHHHHHHhhHHHHHHHhhhhHHHh---cCccccc--hhHHHHHHHHHHHHHHHHHHH
Q 022888 69 ERERLNGH--------YGATAFVFGNTFSALPYLALISLIPGAIVYY---LPGLHEG--YQHFIYFVLLLFACMLLVESL 135 (290)
Q Consensus 69 ~rE~~~g~--------Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~---~~g~~~~--~~~f~~~~l~~~l~~~~~~~l 135 (290)
+-|+++|. ++.+-.+++|...-+....+..++.....+. ..|...+ ...++.....-++.++...++
T Consensus 76 ~~Ehk~n~W~~ll~lPv~r~~~YlsK~~~vf~L~~l~~li~~~~i~~~gv~~g~~~s~~~~~~~~~~~~gll~alpl~~l 155 (239)
T COG4200 76 SVEHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAAAFTLLILGLLLALPLVAL 155 (239)
T ss_pred HHHhcCCCchhhheeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55777776 4678889999999887776665544433332 2233322 344555566667777777788
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhHhhhcCCCcccCCCCHHHHH
Q 022888 136 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVL 215 (290)
Q Consensus 136 g~~is~~~~~~~~a~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L 215 (290)
=...+...+|...|..++... |..+- ..-+..|. | +.|-+|.. .+.
T Consensus 156 Q~wLsm~fknf~~al~igI~l--~a~fv----a~~~s~~~--~---~PW~~pi~----~~~------------------- 201 (239)
T COG4200 156 QFWLSMRFKNFAVALVIGIFL--PALFV----ASAESLPV--W---LPWASPIL----PMF------------------- 201 (239)
T ss_pred HHHHHHHHHhhhHhHHHHHhH--HHHHH----HhccccCc--c---ccchhhhh----hhh-------------------
Confidence 888899999998888777665 33222 23455675 3 67777764 111
Q ss_pred hhhhccccCccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 022888 216 RDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVE 253 (290)
Q Consensus 216 ~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~ 253 (290)
+.+.+.-.++..+.+..+++.+.+.+.+++++
T Consensus 202 ------~~~l~v~~~i~~~~v~~ll~~l~s~l~~~r~~ 233 (239)
T COG4200 202 ------SGSLSVETGILFLGVLALLFLLSSFLFFKRKK 233 (239)
T ss_pred ------ccccccchhHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11112334666777777788888877777543
No 40
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=92.98 E-value=8 Score=36.23 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=19.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 022888 4 DLGYYWFRLGVYVLLGIGLATVFSNLGT 31 (290)
Q Consensus 4 ~~~~~~~~~~~~~~~~li~G~~f~~~~~ 31 (290)
|+..++.=.+-..+.|+++|.+|-++++
T Consensus 296 ~Rg~lI~W~v~~fllglvygs~fg~l~~ 323 (536)
T COG3559 296 NRGSLILWTVGLFLLGLVYGSVFGGLGD 323 (536)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3444555556668889999999987764
No 41
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.61 E-value=22 Score=32.43 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=32.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhccc--chhhccccccccccccccCC-CCCCCccC
Q 022888 227 KWVDLAILFGMVVFYRLVFLGIIKTVEKMKP--VVKAFMSVPMKQTTQIMENP-CATPPQED 285 (290)
Q Consensus 227 ~~~~~~iL~~~~v~~~~l~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 285 (290)
.-.-+.++.++.+.. ..++++|.+.-+.++ ..++++..++-++++.+||- +.+|.++|
T Consensus 189 ~s~FFl~l~~~~~~a-laAF~vL~r~~~~~~~s~~~~~~p~~~l~si~~~ee~~~~~~~~~d 249 (439)
T KOG4255|consen 189 VSTFFLALFAFTCAA-LAAFFVLYRLGAHWPSSTTGELEPQLQLGSIGAEEETDESSPLQED 249 (439)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCCCCCCCCCCccccCCCCcccccccCCCCCCC
Confidence 334455555555444 444555554433333 24777777888888888877 44444443
No 42
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=84.21 E-value=26 Score=30.16 Aligned_cols=113 Identities=14% Similarity=0.172 Sum_probs=60.6
Q ss_pred HHHHhCCCC--------chHHHHHHHHHHHhhHHHHHHHhhh----hHHHhcCccc-cchhHHHHHHHHHHHHHHHHHHH
Q 022888 69 ERERLNGHY--------GATAFVFGNTFSALPYLALISLIPG----AIVYYLPGLH-EGYQHFIYFVLLLFACMLLVESL 135 (290)
Q Consensus 69 ~rE~~~g~Y--------~~~~y~lak~l~~~~~~~~~~~i~~----~i~y~~~g~~-~~~~~f~~~~l~~~l~~~~~~~l 135 (290)
++|+++|.| +....++||.+.-....++..++.. ...+ +.+.. .+...++...+..++.++....+
T Consensus 64 ~~E~~~~~~k~lls~pvs~~~~~~aK~l~~~~~~~~s~~i~~i~~~~~g~-l~~~~~~~~~~~~~~~l~~~i~sl~~i~l 142 (241)
T TIGR03732 64 KKEKKASNYRAILSLPVDLKKVWIAKILVIAIYLLISCIILFIGLVLIGF-VIPPSNISIGQALLASLLIWLTSLWQIPL 142 (241)
T ss_pred HHHHhccCcceEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 556665554 6788899999987666555544433 2333 22322 23345555566666666667777
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHhH
Q 022888 136 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMF 196 (290)
Q Consensus 136 g~~is~~~~~~~~a~~i~~~~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l~ 196 (290)
-+.++.-. + +.....+.....+..|.+...+ + .| ++.|..|..+.+.
T Consensus 143 ~l~ls~~~-g----~~~si~ig~~~~li~g~~~~~~--~--~w-----~~~P~s~~~rl~~ 189 (241)
T TIGR03732 143 CLFLARKF-G----MFVSILVNLVLGLIFGIVLATK--S--FW-----WLFPYSWPSRLMC 189 (241)
T ss_pred HHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHcc--C--Ce-----EEechHHHHHHHh
Confidence 77776443 2 2221222222233345553322 2 23 3577777777774
No 43
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=83.65 E-value=13 Score=38.61 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=73.6
Q ss_pred hhhhhhHHHHH--HHHhCCCCchHHHHHHHHHHHhhHHHHHHHhhhhHHHhcCccccchhHHHHHHHHHHHHHHHHHHHH
Q 022888 59 PSFVEDMKVFE--RERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLM 136 (290)
Q Consensus 59 ~~~~~er~v~~--rE~~~g~Y~~~~y~lak~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg 136 (290)
.....||..-. .+.-+|+ ++.+|+++..+.+....++..++...+++.. | .....+.....+...+.......+.
T Consensus 317 ~~li~e~~~~~~~~~~i~G~-~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f-~-~~~~~~~~~~~~~~~l~~~s~i~l~ 393 (885)
T KOG0059|consen 317 LSLILERQQRLRHQQLIAGL-SPSTYWLFALVWDLLLYLLILLILLIFVLIF-G-FFAGNNTVIILLLLLLYIRSAIPLT 393 (885)
T ss_pred hHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhhee-e-cccccchHHHHHHHHHHHHHHHHHH
Confidence 33455555543 4577888 9999999999999998888877766666543 3 2345567777888888889999999
Q ss_pred HHHHHhccchHHHHHHHHHHHHHH
Q 022888 137 MIVASLVPNYLTGIITGAGIQGLM 160 (290)
Q Consensus 137 ~~is~~~~~~~~a~~i~~~~~~~~ 160 (290)
++.+.+++.+..+..+..++....
T Consensus 394 y~~s~~f~~~~~~~v~~~i~~~~s 417 (885)
T KOG0059|consen 394 YILSFIFSKESTASVILSIYNLIS 417 (885)
T ss_pred HHHHHHhcCCcCceeehhhHHHHH
Confidence 999999998888877665554443
No 44
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=68.88 E-value=10 Score=26.45 Aligned_cols=8 Identities=25% Similarity=0.613 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 022888 235 FGMVVFYR 242 (290)
Q Consensus 235 ~~~~v~~~ 242 (290)
+++.++|.
T Consensus 10 ~Gm~iVF~ 17 (79)
T PF04277_consen 10 IGMGIVFL 17 (79)
T ss_pred HHHHHHHH
Confidence 33333333
No 45
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=59.50 E-value=25 Score=24.99 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 022888 233 ILFGMVVFYRLVFLG 247 (290)
Q Consensus 233 iL~~~~v~~~~l~~~ 247 (290)
.++++.++|.++..+
T Consensus 11 ~v~GM~~VF~fL~lL 25 (82)
T TIGR01195 11 TVLGMGIVFLFLSLL 25 (82)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555443
No 46
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=58.51 E-value=11 Score=33.15 Aligned_cols=31 Identities=10% Similarity=-0.003 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcccchh
Q 022888 229 VDLAILFGMVVFYRLVFLGIIKTVEKMKPVVK 260 (290)
Q Consensus 229 ~~~~iL~~~~v~~~~l~~~~l~~~~~~~~~~~ 260 (290)
...++|++++|++.++ |+.|++|||+.|+++
T Consensus 263 iaalvllil~vvliiL-YiWlyrrRK~swkhe 293 (295)
T TIGR01478 263 IAALVLIILTVVLIIL-YIWLYRRRKKSWKHE 293 (295)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhccccccc
Confidence 4556778888888766 556788888887654
No 47
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=57.97 E-value=12 Score=28.96 Aligned_cols=19 Identities=26% Similarity=0.744 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 022888 228 WVDLAILFGMVVFYRLVFL 246 (290)
Q Consensus 228 ~~~~~iL~~~~v~~~~l~~ 246 (290)
|.-+++++++++++.++.+
T Consensus 2 W~l~~iii~~i~l~~~~~~ 20 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFY 20 (130)
T ss_pred eeeHHHHHHHHHHHHHHHH
Confidence 4444454544444444433
No 48
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=57.67 E-value=10 Score=26.91 Aligned_cols=18 Identities=6% Similarity=0.099 Sum_probs=13.5
Q ss_pred cccccccCCCCCCCccCc
Q 022888 269 QTTQIMENPCATPPQEDK 286 (290)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~ 286 (290)
.++.-+++-++-+|+||.
T Consensus 44 ~RIreraEDSGnES~Gd~ 61 (81)
T PF00558_consen 44 ERIRERAEDSGNESDGDE 61 (81)
T ss_dssp HHHHCTTTCCHCTTTTCC
T ss_pred HHHHcccccCCCCCCCcH
Confidence 356667788888888884
No 49
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=57.21 E-value=1.8e+02 Score=27.67 Aligned_cols=109 Identities=16% Similarity=0.072 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHHhhHHHHHHHhhhhHHHh--cCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 022888 78 GATAFVFGNTFSALPYLALISLIPGAIVYY--LPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAG 155 (290)
Q Consensus 78 ~~~~y~lak~l~~~~~~~~~~~i~~~i~y~--~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~i~~~ 155 (290)
+..+-+.+-+...+..+++...+......- ..+- ...+.-+.|-..+....+...++..+.+.+.++...-.-.+-.
T Consensus 124 grlan~~aa~~~ll~~sil~gai~alsLla~~~~~~-i~lags~afgvtl~~tg~~~~avaalf~qL~~~a~~t~g~~f~ 202 (536)
T COG3559 124 GRLANLTAALLLLLGASILTGAIGALSLLATRYIDD-IALAGSVAFGVTLAATGMVFTAVAALFAQLSPSARFTRGVAFA 202 (536)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhHHH
Confidence 445555555555555555544433322221 1222 1234445566777777788888888888887765433322222
Q ss_pred HHHHHHHhcccccCCCCCCcccccccccccCHHHHHHHHh
Q 022888 156 IQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGM 195 (290)
Q Consensus 156 ~~~~~~l~sG~~~~~~~~p~~~w~~~l~~isP~~y~~~~l 195 (290)
......+. .-..|... . -++|.||.-|.+..-
T Consensus 203 llG~aflv----Rmi~Dvss---~-~L~WfsPlgW~~~~~ 234 (536)
T COG3559 203 LLGTAFLV----RMIGDVSS---G-TLSWFSPLGWSLQVR 234 (536)
T ss_pred HHHHHHHH----HHHhcccc---c-ccccccCccceEEee
Confidence 11111111 01122222 1 289999998876543
No 50
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=55.89 E-value=19 Score=29.14 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=11.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhh
Q 022888 227 KWVDLAILFGMVVFYRLVFLGIIKTVE 253 (290)
Q Consensus 227 ~~~~~~iL~~~~v~~~~l~~~~l~~~~ 253 (290)
..+.+.++.++..+ ++.|+.+|..|
T Consensus 94 l~R~~~Vl~g~s~l--~i~yfvir~~R 118 (163)
T PF06679_consen 94 LKRALYVLVGLSAL--AILYFVIRTFR 118 (163)
T ss_pred hhhhHHHHHHHHHH--HHHHHHHHHHh
Confidence 34555555544432 33444445433
No 51
>PTZ00370 STEVOR; Provisional
Probab=55.78 E-value=13 Score=32.82 Aligned_cols=31 Identities=10% Similarity=0.000 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcccchh
Q 022888 229 VDLAILFGMVVFYRLVFLGIIKTVEKMKPVVK 260 (290)
Q Consensus 229 ~~~~iL~~~~v~~~~l~~~~l~~~~~~~~~~~ 260 (290)
...++|++++|++.++ |+.|.+|||+.|+++
T Consensus 259 iaalvllil~vvliil-YiwlyrrRK~swkhe 289 (296)
T PTZ00370 259 IAALVLLILAVVLIIL-YIWLYRRRKNSWKHE 289 (296)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhcchhHHH
Confidence 4556778888888766 556778888888653
No 52
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=54.54 E-value=9.6 Score=35.12 Aligned_cols=68 Identities=9% Similarity=0.052 Sum_probs=36.8
Q ss_pred hccccCccchhhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhccccccccccccccCCCCCCCccCcccc
Q 022888 219 WQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATPPQEDKIFY 289 (290)
Q Consensus 219 ~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (290)
.|.|.++ .|..++-..+..+++.++-.+.+-+++|+| .++.+.++..+...+..+++..+++++|+++
T Consensus 167 Lg~d~~e-l~~pliP~~i~Gl~~vl~lA~~lG~kErkR--lg~~~~~~~~~~~~~~~~~~~~~~~rpkl~W 234 (433)
T COG2851 167 LGVDPAE-LFVPLIPIQIIGLVLVLALAWLLGKKERKR--LGVIDLSEELEQLVELSEEDQEELKRPKLFW 234 (433)
T ss_pred hCCCHHH-HHhhhhHHHHHHHHHHHHHHHHhhHHHHHH--hhhccCchhhhhccccCCchhhhhhccHHHH
Confidence 3555544 787777777666666655555555555433 3443333332222333444445577888764
No 53
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=51.01 E-value=35 Score=20.45 Aligned_cols=21 Identities=14% Similarity=0.244 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 022888 6 GYYWFRLGVYVLLGIGLATVF 26 (290)
Q Consensus 6 ~~~~~~~~~~~~~~li~G~~f 26 (290)
+..+.-++.|+++++++|.+|
T Consensus 4 Sl~fa~iMVPVvma~ilglIy 24 (41)
T PF10766_consen 4 SLAFAVIMVPVVMALILGLIY 24 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455667788999999999988
No 54
>COG4393 Predicted membrane protein [Function unknown]
Probab=46.46 E-value=2.2e+02 Score=26.01 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=11.3
Q ss_pred HHHHHHHHHhccchHHHH
Q 022888 133 ESLMMIVASLVPNYLTGI 150 (290)
Q Consensus 133 ~~lg~~is~~~~~~~~a~ 150 (290)
...|..+++-.|..+.-+
T Consensus 42 ~~~g~~~~~y~pKsq~~~ 59 (405)
T COG4393 42 GYFGFFIAAYFPKSQNLI 59 (405)
T ss_pred HHHHHHHHHhccccccee
Confidence 356777777776555433
No 55
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=45.76 E-value=59 Score=22.46 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022888 231 LAILFGMVVFYRLVFLG 247 (290)
Q Consensus 231 ~~iL~~~~v~~~~l~~~ 247 (290)
+.+|+.+++++.+++.+
T Consensus 16 F~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 16 FLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 56
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=45.21 E-value=39 Score=24.17 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 022888 232 AILFGMVVFYRLVFLG 247 (290)
Q Consensus 232 ~iL~~~~v~~~~l~~~ 247 (290)
+.++++.++|.++..+
T Consensus 14 lm~~GM~~VF~fL~lL 29 (85)
T PRK03814 14 LMLTGMGVVFIFLTLL 29 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455566665555443
No 57
>COG4325 Predicted membrane protein [Function unknown]
Probab=44.47 E-value=2.7e+02 Score=26.02 Aligned_cols=71 Identities=15% Similarity=0.008 Sum_probs=44.2
Q ss_pred hHHHHHHHhhhhHHHhcCccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHH
Q 022888 92 PYLALISLIPGAIVYYLPGLHEGY-QHFIYFVLLLFACMLLVESLMMIVASLV---PNYLTGIITGAGIQGLMIL 162 (290)
Q Consensus 92 ~~~~~~~~i~~~i~y~~~g~~~~~-~~f~~~~l~~~l~~~~~~~lg~~is~~~---~~~~~a~~i~~~~~~~~~l 162 (290)
.-.++++++|.+.+.-.+|-..+. +.|.-...+...+.+...++|.++-.+. -+...++.+..+-.-.+.+
T Consensus 130 La~FlctFvysl~vlrtvg~e~d~~g~FIp~~avtv~lLlaiisig~~iyfl~~l~~siq~~n~i~kv~~~t~~l 204 (464)
T COG4325 130 LAIFLCTFVYSLGVLRTVGEERDGQGAFIPKVAVTVSLLLAIISIGALIYFLHHLMHSIQIDNIIDKVRLRTLGL 204 (464)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCccccceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777776666655443 6787777777777888888888876653 2234445544443333333
No 58
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=41.68 E-value=43 Score=21.86 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccc
Q 022888 234 LFGMVVFYRLVFLGIIKTVEKMKP 257 (290)
Q Consensus 234 L~~~~v~~~~l~~~~l~~~~~~~~ 257 (290)
++.+.++..+..+.+||+..+.|-
T Consensus 8 IIviVlgvIigNia~LK~sAk~K~ 31 (55)
T PF11446_consen 8 IIVIVLGVIIGNIAALKYSAKMKF 31 (55)
T ss_pred HHHHHHHHHHhHHHHHHHhcccCC
Confidence 333444555666777888776554
No 59
>PF09847 DUF2074: Predicted permease (DUF2074); InterPro: IPR018646 This family has no known function.
Probab=41.45 E-value=3.2e+02 Score=26.04 Aligned_cols=101 Identities=12% Similarity=0.069 Sum_probs=53.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHhCCCCchHH
Q 022888 2 YRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATA 81 (290)
Q Consensus 2 ~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~ 81 (290)
.|+++.+. -+..|+.+++..-....+.++. .. ...+.+......+++........|++.+.=-|.-.. +...
T Consensus 262 ~R~sq~l~-~~L~Pl~~~i~~i~~~~~~~~~---~~---~~~~~i~~~~~~ss~~~~~~l~~E~~~~~~l~sLPi-~~~~ 333 (449)
T PF09847_consen 262 FRKSQLLF-GFLYPLVFVIPFIFMILSSGDP---LS---LTIFYIIIIGVYSSMMSDALLKIEGEGFEFLRSLPI-KKRE 333 (449)
T ss_pred HcchhHHH-HHHHHHHHHHHHHHHHhhcCch---hH---HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHhhCCC-ChHH
Confidence 47766654 6667776666542222222211 11 222222233333333444445566666655555555 8999
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhHHHhcCc
Q 022888 82 FVFGNTFSALPYLALISLIPGAIVYYLPG 110 (290)
Q Consensus 82 y~lak~l~~~~~~~~~~~i~~~i~y~~~g 110 (290)
+..+|.+.-.........+..+......|
T Consensus 334 ~v~sKil~~~~i~~~l~~~i~i~~~~~~~ 362 (449)
T PF09847_consen 334 FVRSKILIPSIIPSALSLIIVIVSSIYNG 362 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999998765544444444444444444
No 60
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=38.68 E-value=49 Score=25.47 Aligned_cols=8 Identities=13% Similarity=0.438 Sum_probs=3.1
Q ss_pred hHHHHHHH
Q 022888 230 DLAILFGM 237 (290)
Q Consensus 230 ~~~iL~~~ 237 (290)
.++++.+.
T Consensus 70 i~gv~aGv 77 (122)
T PF01102_consen 70 IFGVMAGV 77 (122)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 33333333
No 61
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=38.61 E-value=29 Score=26.84 Aligned_cols=21 Identities=10% Similarity=0.015 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 022888 234 LFGMVVFYRLVFLGIIKTVEK 254 (290)
Q Consensus 234 L~~~~v~~~~l~~~~l~~~~~ 254 (290)
++++++++.++.+++....+|
T Consensus 5 ~~iii~~i~l~~~~~~~~~rR 25 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHNRR 25 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 62
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=37.60 E-value=38 Score=30.35 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=17.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 022888 227 KWVDLAILFGMVVFYRLVFLGIIKTVEKMK 256 (290)
Q Consensus 227 ~~~~~~iL~~~~v~~~~l~~~~l~~~~~~~ 256 (290)
+...+++++++.+++ ++-|+.||+|||.|
T Consensus 258 I~aSiiaIliIVLIM-vIIYLILRYRRKKK 286 (299)
T PF02009_consen 258 IIASIIAILIIVLIM-VIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence 344555555544444 55577888887544
No 63
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=37.01 E-value=2.1e+02 Score=25.94 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=45.9
Q ss_pred cccCHHHHHHHHhHhhhcCCCcccCCCCHHHHHhhhhccccCccchhhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhc
Q 022888 183 YYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAF 262 (290)
Q Consensus 183 ~~isP~~y~~~~l~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~l~~~~~~~~~~~~~ 262 (290)
.|+.-++|++-.+.+.-|.|.-- ...++-+.++ ...-.-.-+-||++..++...+..+.++.+.-+.+..||-
T Consensus 186 syfds~YyCFITltTIGFGDyVa---lQ~~~alq~q----plYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~~~rr~ 258 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVA---LQQDAALQSQ----PLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAEDERRD 258 (350)
T ss_pred chhhhhheeeeeeeeccccchhh---hcchhhhhCC----CceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 45556677777777666665421 1112222221 1111234567899999999999999999987766665554
Q ss_pred ccc
Q 022888 263 MSV 265 (290)
Q Consensus 263 ~~~ 265 (290)
+++
T Consensus 259 ~~~ 261 (350)
T KOG4404|consen 259 EQE 261 (350)
T ss_pred Hhh
Confidence 443
No 64
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=36.79 E-value=4e+02 Score=25.76 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhhchhh
Q 022888 41 SLLMFVASYLTFMTIGGFPS 60 (290)
Q Consensus 41 ~~l~~~~~~~~~~~~~~~~~ 60 (290)
|++.+.....++..+..-|.
T Consensus 213 G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 213 GVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred HHHHHHHHheEEEEecCChh
Confidence 33333333334444444444
No 65
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=33.78 E-value=51 Score=26.38 Aligned_cols=28 Identities=11% Similarity=-0.042 Sum_probs=20.9
Q ss_pred CCCChhHH---HHHHHHHHHHHHHHHHHHhC
Q 022888 1 MYRDLGYY---WFRLGVYVLLGIGLATVFSN 28 (290)
Q Consensus 1 ~~R~~~~~---~~~~~~~~~~~li~G~~f~~ 28 (290)
++|||..+ ++-+++|+++++++|..+.+
T Consensus 6 ~~r~~~~~~~li~~~~~P~i~~~~~~~a~~~ 36 (164)
T TIGR03061 6 LRKNKLLRIALIAIMLIPLLYGGLFLWAFWD 36 (164)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46899644 34577889999999988864
No 66
>PF11189 DUF2973: Protein of unknown function (DUF2973); InterPro: IPR021355 This entry is represented by Bacteriophage Syn9, Gp224. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently they have no known function.
Probab=33.55 E-value=66 Score=21.75 Aligned_cols=16 Identities=0% Similarity=0.220 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 022888 236 GMVVFYRLVFLGIIKT 251 (290)
Q Consensus 236 ~~~v~~~~l~~~~l~~ 251 (290)
.++.+|.++++.+.+.
T Consensus 5 lY~~af~~L~~~a~~~ 20 (65)
T PF11189_consen 5 LYILAFTILLFLAFRN 20 (65)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555433
No 67
>PF15102 TMEM154: TMEM154 protein family
Probab=30.49 E-value=24 Score=27.98 Aligned_cols=22 Identities=23% Similarity=0.042 Sum_probs=10.7
Q ss_pred hcccchhhcccccccccccccc
Q 022888 254 KMKPVVKAFMSVPMKQTTQIME 275 (290)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~ 275 (290)
|+|+.++...+.-++.+-|-.|
T Consensus 83 kRkr~K~~~ss~gsq~~~qt~e 104 (146)
T PF15102_consen 83 KRKRTKQEPSSQGSQSALQTYE 104 (146)
T ss_pred eecccCCCCccccccccccccc
Confidence 3333345455555555555444
No 68
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.28 E-value=88 Score=24.05 Aligned_cols=14 Identities=14% Similarity=-0.019 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 022888 231 LAILFGMVVFYRLV 244 (290)
Q Consensus 231 ~~iL~~~~v~~~~l 244 (290)
..++++++++.-++
T Consensus 65 ~i~~Ii~gv~aGvI 78 (122)
T PF01102_consen 65 AIIGIIFGVMAGVI 78 (122)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHH
Confidence 34555555555433
No 69
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.07 E-value=1.1e+02 Score=22.33 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=11.5
Q ss_pred CCCCcccccccccccCHHHHHHH
Q 022888 171 NDLPHPFWKYPLYYIAFHKYAYQ 193 (290)
Q Consensus 171 ~~~p~~~w~~~l~~isP~~y~~~ 193 (290)
-.+|+ |-| ..+ +|++|+--
T Consensus 66 i~LPp--wP~-y~r-n~LkW~~P 84 (101)
T KOG4112|consen 66 ITLPP--WPW-YRR-NPLKWAQP 84 (101)
T ss_pred hcCCC--chh-hhc-CcccccCC
Confidence 34675 653 444 88888754
No 70
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=28.48 E-value=64 Score=29.53 Aligned_cols=30 Identities=13% Similarity=0.188 Sum_probs=20.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 022888 227 KWVDLAILFGMVVFYRLVFLGIIKTVEKMKP 257 (290)
Q Consensus 227 ~~~~~~iL~~~~v~~~~l~~~~l~~~~~~~~ 257 (290)
+-..+++++++.+++ ++-|+.||+|||.|-
T Consensus 312 IiaSiIAIvvIVLIM-vIIYLILRYRRKKKM 341 (353)
T TIGR01477 312 IIASIIAILIIVLIM-VIIYLILRYRRKKKM 341 (353)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhhcchh
Confidence 455666666666555 566888999887553
No 71
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=28.30 E-value=93 Score=19.42 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 022888 230 DLAILFGMVVFYRLVFLGIIKTV 252 (290)
Q Consensus 230 ~~~iL~~~~v~~~~l~~~~l~~~ 252 (290)
....++.+.++|..+.+.+.+.+
T Consensus 11 ~~~~~v~~~~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 11 RSIGTVLFFVFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 34455555556655555555433
No 72
>PTZ00046 rifin; Provisional
Probab=27.93 E-value=66 Score=29.53 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=20.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 022888 227 KWVDLAILFGMVVFYRLVFLGIIKTVEKMKP 257 (290)
Q Consensus 227 ~~~~~~iL~~~~v~~~~l~~~~l~~~~~~~~ 257 (290)
+-..+++++++.+++ ++-|+.||+|||.|-
T Consensus 317 IiaSiiAIvVIVLIM-vIIYLILRYRRKKKM 346 (358)
T PTZ00046 317 IIASIVAIVVIVLIM-VIIYLILRYRRKKKM 346 (358)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhhcchh
Confidence 455666666666555 566888999887553
No 73
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=27.62 E-value=3.8e+02 Score=25.56 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=22.1
Q ss_pred HHHHHHHh-CC-CCchHHHHHHHHHHHhhHHHHHH
Q 022888 66 KVFERERL-NG-HYGATAFVFGNTFSALPYLALIS 98 (290)
Q Consensus 66 ~v~~rE~~-~g-~Y~~~~y~lak~l~~~~~~~~~~ 98 (290)
++.+|+++ +| +.+-.+|++.|-+..-....+.+
T Consensus 118 a~~Yr~kd~~G~~~GGP~yYi~kGl~~r~l~v~FA 152 (452)
T COG1115 118 AQKYRVKDKDGEYRGGPAYYIEKGLGMRWLAVLFA 152 (452)
T ss_pred HhheeEeCCCCCCcCChHHHHHhhcCCcHHHHHHH
Confidence 34456555 66 44788899999888655555555
No 74
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=27.10 E-value=2.4e+02 Score=20.88 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=18.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 022888 226 SKWVDLAILFGMVVFYRLVFLGIIKTVE 253 (290)
Q Consensus 226 ~~~~~~~iL~~~~v~~~~l~~~~l~~~~ 253 (290)
+.|.-++..++-+++..++.+++.|...
T Consensus 15 ~sW~~LVGVv~~al~~SlLIalaaKC~~ 42 (102)
T PF15176_consen 15 RSWPFLVGVVVTALVTSLLIALAAKCPV 42 (102)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3777666666666666677677776643
No 75
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.02 E-value=1.3e+02 Score=26.89 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=13.9
Q ss_pred hcccccccccccccc------CCCCCCCcc
Q 022888 261 AFMSVPMKQTTQIME------NPCATPPQE 284 (290)
Q Consensus 261 ~~~~~~~~~~~~~~~------~~~~~~~~~ 284 (290)
+.+++.+|+++.+.| |++++|++.
T Consensus 340 ~~~sr~~k~~~~~~~ng~~~~~~~dsp~~~ 369 (374)
T KOG1608|consen 340 KKPSRSSKKAVENKENGVLTSNRQDSPSDK 369 (374)
T ss_pred cCcccchhhhccccccCccccccCCCCCch
Confidence 345666666666666 455555543
No 76
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=24.77 E-value=2.3e+02 Score=21.15 Aligned_cols=10 Identities=10% Similarity=-0.064 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 022888 236 GMVVFYRLVF 245 (290)
Q Consensus 236 ~~~v~~~~l~ 245 (290)
.+.+++.+++
T Consensus 12 ll~l~asl~~ 21 (107)
T PF15330_consen 12 LLSLAASLLA 21 (107)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 77
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=23.36 E-value=1.7e+02 Score=19.42 Aligned_cols=21 Identities=10% Similarity=0.442 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 022888 230 DLAILFGMVVFYRLVFLGIIK 250 (290)
Q Consensus 230 ~~~iL~~~~v~~~~l~~~~l~ 250 (290)
-++.|+.+.++|--+.|.+..
T Consensus 11 riVLLISfiIlfgRl~Y~~I~ 31 (59)
T PF11119_consen 11 RIVLLISFIILFGRLIYSAIG 31 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666534444443
No 78
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=22.86 E-value=6.6e+02 Score=23.81 Aligned_cols=30 Identities=10% Similarity=0.360 Sum_probs=23.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 022888 227 KWVDLAILFGMVVFYRLVFLGIIKTVEKMK 256 (290)
Q Consensus 227 ~~~~~~iL~~~~v~~~~l~~~~l~~~~~~~ 256 (290)
.+.+....++..+.+..+.|-+.+.....+
T Consensus 281 ~~~~~~~iig~i~~~~~v~yss~ra~~~s~ 310 (429)
T PF03348_consen 281 SWNTWQSIIGLIFTFVSVLYSSFRASSSSQ 310 (429)
T ss_pred CcchHHHHHHHHHHHHHHHHhccccccccc
Confidence 567778888888888888888888765444
No 79
>PF15050 SCIMP: SCIMP protein
Probab=21.54 E-value=84 Score=24.00 Aligned_cols=7 Identities=0% Similarity=-0.106 Sum_probs=2.8
Q ss_pred HHHHHhh
Q 022888 246 LGIIKTV 252 (290)
Q Consensus 246 ~~~l~~~ 252 (290)
|+..|+.
T Consensus 28 yCvcR~~ 34 (133)
T PF15050_consen 28 YCVCRWQ 34 (133)
T ss_pred HHHHHHH
Confidence 3334443
No 80
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=21.53 E-value=1.6e+02 Score=20.34 Aligned_cols=29 Identities=10% Similarity=-0.054 Sum_probs=18.6
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHhcccc
Q 022888 139 VASLVPNYLTGIITGAGIQGLMILGGGFF 167 (290)
Q Consensus 139 is~~~~~~~~a~~i~~~~~~~~~l~sG~~ 167 (290)
+-..++||-.-..-..++++|+++.||++
T Consensus 12 v~~vAkdP~~Fl~~vll~LtPlfiisa~l 40 (74)
T PF15086_consen 12 VEWVAKDPYEFLTTVLLILTPLFIISAVL 40 (74)
T ss_pred HHHHHcChHHHHHHHHHHHhHHHHHHHHH
Confidence 44555666555555556677777777776
No 81
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=21.52 E-value=1.8e+02 Score=17.31 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 022888 5 LGYYWFRLGVYVLLGIGLATVFS 27 (290)
Q Consensus 5 ~~~~~~~~~~~~~~~li~G~~f~ 27 (290)
+..++..+++.++.|+++..-|+
T Consensus 16 RTSLy~GlLlifvl~vLFssYff 38 (39)
T PRK00753 16 RTSLYLGLLLVFVLGILFSSYFF 38 (39)
T ss_pred hhhHHHHHHHHHHHHHHHHhhcc
Confidence 34555566666667776665554
No 82
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=21.47 E-value=1.3e+02 Score=27.93 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=9.7
Q ss_pred chhhHHHHHHHHHHHHHH
Q 022888 227 KWVDLAILFGMVVFYRLV 244 (290)
Q Consensus 227 ~~~~~~iL~~~~v~~~~l 244 (290)
.-.+++++..+++++.++
T Consensus 305 i~~~la~i~~i~l~~~vv 322 (374)
T PF01528_consen 305 IAINLAVIAIICLIMMVV 322 (374)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334566666655555444
No 83
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=21.03 E-value=2.3e+02 Score=21.92 Aligned_cols=14 Identities=21% Similarity=0.028 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhhh
Q 022888 240 FYRLVFLGIIKTVE 253 (290)
Q Consensus 240 ~~~~l~~~~l~~~~ 253 (290)
....+.++.+....
T Consensus 96 ~~~G~~~i~l~~~~ 109 (136)
T PF08507_consen 96 FLVGVIYIILGFFC 109 (136)
T ss_pred HHHHHHHHHHHHHc
Confidence 33334444444433
No 84
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=20.86 E-value=1.9e+02 Score=17.87 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhhhhcc
Q 022888 240 FYRLVFLGIIKTVEKMK 256 (290)
Q Consensus 240 ~~~~l~~~~l~~~~~~~ 256 (290)
+..+.++++|....+.+
T Consensus 14 il~If~~iGl~IyQkik 30 (49)
T PF11044_consen 14 ILGIFAWIGLSIYQKIK 30 (49)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555555544443
Done!