Query 022888
Match_columns 290
No_of_seqs 130 out of 1395
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 12:48:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 30.7 22 0.00075 24.1 1.6 20 257-276 42-61 (79)
2 2ks1_B Epidermal growth factor 22.8 1.2E+02 0.004 18.0 3.6 6 246-251 32-37 (44)
3 3arc_L Photosystem II reaction 14.4 1.9E+02 0.0064 16.2 3.9 24 4-27 13-36 (37)
4 3iz6_Q 40S ribosomal protein S 13.3 1.4E+02 0.0047 22.4 2.9 45 242-286 49-95 (141)
5 2xzm_V RPS17E; ribosome, trans 10.4 2.2E+02 0.0075 21.0 3.1 46 242-287 49-96 (130)
6 1s4x_A Integrin beta-3; cell a 10.3 49 0.0017 21.6 -0.4 20 258-277 31-50 (67)
7 2jp3_A FXYD domain-containing 10.3 2.2E+02 0.0074 18.4 2.7 19 232-250 20-38 (67)
8 2qlc_A DNA repair protein RADC 9.1 67 0.0023 23.7 -0.1 17 270-286 73-89 (126)
9 2zxe_G FXYD10, phospholemman-l 8.8 2.2E+02 0.0077 18.7 2.4 38 235-272 24-61 (74)
10 2lkg_A Acetylcholine receptor; 8.1 6.5E+02 0.022 18.5 8.3 70 1-70 45-114 (140)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=30.67 E-value=22 Score=24.06 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=9.5
Q ss_pred cchhhccccccccccccccC
Q 022888 257 PVVKAFMSVPMKQTTQIMEN 276 (290)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~ 276 (290)
+..+|++..+++..-+..+|
T Consensus 42 rE~~kFEkE~~~~~w~~~~N 61 (79)
T 2knc_B 42 KEFAKFEEERARAKWDTANN 61 (79)
T ss_dssp HHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHhcccccCCC
Confidence 33466666555443333333
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=22.82 E-value=1.2e+02 Score=17.96 Aligned_cols=6 Identities=0% Similarity=-0.153 Sum_probs=2.3
Q ss_pred HHHHHh
Q 022888 246 LGIIKT 251 (290)
Q Consensus 246 ~~~l~~ 251 (290)
++.+|+
T Consensus 32 ~~~~RR 37 (44)
T 2ks1_B 32 GLFMRR 37 (44)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 333343
No 3
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=14.42 E-value=1.9e+02 Score=16.19 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=15.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHh
Q 022888 4 DLGYYWFRLGVYVLLGIGLATVFS 27 (290)
Q Consensus 4 ~~~~~~~~~~~~~~~~li~G~~f~ 27 (290)
|+..++..+.+.++.++++..-|+
T Consensus 13 NRTSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 13 NRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhhhhcc
Confidence 345556666666777777766554
No 4
>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=13.34 E-value=1.4e+02 Score=22.42 Aligned_cols=45 Identities=4% Similarity=-0.025 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhhhcccchhhccccccccccccccC--CCCCCCccCc
Q 022888 242 RLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMEN--PCATPPQEDK 286 (290)
Q Consensus 242 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 286 (290)
++++|+.=..++.++...|+.+=.-++.++.++.| |+.+..|-|.
T Consensus 49 kIAGYVThlmKriq~GpvrgisiklqEeERerrdnyvpe~S~ld~~~ 95 (141)
T 3iz6_Q 49 KVAGFTTHLMRRIQRGPVRGISLKLQEEERERRMDFVPEKSALEVEE 95 (141)
T ss_dssp HHHHHHHHHHHHHCSCCCCCSSCCSSCCCCCSCSSSSCCCSEEEECC
T ss_pred hhhheeeehhhccccCCccccceehhHHHHHHHhccCCccccccccc
Confidence 67777766666666665666665556666666665 7777666554
No 5
>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V
Probab=10.36 E-value=2.2e+02 Score=21.03 Aligned_cols=46 Identities=9% Similarity=0.000 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhhcccchhhccccccccccccccC--CCCCCCccCcc
Q 022888 242 RLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMEN--PCATPPQEDKI 287 (290)
Q Consensus 242 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 287 (290)
++++|+.=..++.++...|+.+-.-++.+..++.| |+.+..|.|.+
T Consensus 49 kIAGYVThlmkriq~gpvrgis~klqEeererrd~yvPe~S~ld~~~i 96 (130)
T 2xzm_V 49 KIAGFATHLMKRIQKGPVRGISLKVQEEERERRLDYVPEKSIIDIEKV 96 (130)
T ss_dssp HHHHHHHHHHHHTTTSCCTTCCCTTTTHHHHHTTSCCCSSCSSCSSSC
T ss_pred cccchhhhHhhhcccCcccccccchhHHHHHhhhccCCccccccccee
Confidence 66777765555555554555555445555555555 77776665544
No 6
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=10.31 E-value=49 Score=21.60 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=11.1
Q ss_pred chhhccccccccccccccCC
Q 022888 258 VVKAFMSVPMKQTTQIMENP 277 (290)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~ 277 (290)
..+|++..+++..-+..+||
T Consensus 31 EyakFE~Er~~akw~~~~NP 50 (67)
T 1s4x_A 31 EFAKFEEERARAKWDTANNP 50 (67)
T ss_dssp HHHHHHHHHTTTTTCSSSST
T ss_pred HHHHHHHHHHHccccccCCC
Confidence 35666666665544444444
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=10.25 E-value=2.2e+02 Score=18.43 Aligned_cols=19 Identities=5% Similarity=-0.297 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022888 232 AILFGMVVFYRLVFLGIIK 250 (290)
Q Consensus 232 ~iL~~~~v~~~~l~~~~l~ 250 (290)
+-|+.-.++|.+...+.+.
T Consensus 20 gGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 20 GGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHc
Confidence 3333333344333333333
No 8
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=9.10 E-value=67 Score=23.68 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=14.3
Q ss_pred ccccccCCCCCCCccCc
Q 022888 270 TTQIMENPCATPPQEDK 286 (290)
Q Consensus 270 ~~~~~~~~~~~~~~~~~ 286 (290)
-.|+|+.+..+||++|.
T Consensus 73 l~HNHPSG~~~PS~~D~ 89 (126)
T 2qlc_A 73 LVHNHPSGDVQPSNADK 89 (126)
T ss_dssp EEEECSSSCCSCCHHHH
T ss_pred EEecCCCCCCCCCHHHH
Confidence 47889899999998885
No 9
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=8.84 E-value=2.2e+02 Score=18.73 Aligned_cols=38 Identities=5% Similarity=-0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhccccccccccc
Q 022888 235 FGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQ 272 (290)
Q Consensus 235 ~~~~v~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 272 (290)
+++..+..+++.+.+--.+-+-+..+|...++-..+.|
T Consensus 24 LifA~vLfi~GI~iilS~kcrCk~~qk~~~~p~d~~a~ 61 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGKCRCKFNQNKRTRSNSGTAT 61 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC-------------------
T ss_pred chhHHHHHHHHHHHHHcCccccCCCCCCCCCCCccccc
No 10
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=8.14 E-value=6.5e+02 Score=18.52 Aligned_cols=70 Identities=10% Similarity=-0.070 Sum_probs=0.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHhHHHHHHHHHHHHHHhhhchhhhhhhHHHHHH
Q 022888 1 MYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKVFER 70 (290)
Q Consensus 1 ~~R~~~~~~~~~~~~~~~~li~G~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~er~v~~r 70 (290)
+.|+|.++...+..|.++-.++..+=+=++.+..+-.....-...............+|.....-+...+
T Consensus 45 lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~dsgeRvslgit~lLs~tvfl~~v~~~lP~tS~~vPlI~~ 114 (140)
T 2lkg_A 45 GGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDSGEKMTESKSVLKSLTEKLKKIVELIPSTSSAVPLIGK 114 (140)
T ss_dssp SSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSSSHHHHHHHHHHHHHHHHHHGGGGTCTTTGGGHHHHHH
T ss_pred EEEcceeeeehhhhHHHHHHHHHhheeEcCCCCCCEEEEeeehHHHHHHHHHHHHHhCCCccccccHHHH
Done!