Query 022888
Match_columns 290
No_of_seqs 130 out of 1395
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 12:48:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022888.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022888hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 24.9 39 0.0028 19.9 3.6 25 151-175 10-35 (64)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 23.6 49 0.0035 17.1 3.9 24 4-27 13-36 (37)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 15.0 86 0.0063 20.1 3.9 24 231-254 34-57 (100)
4 d1fftb2 f.17.2.1 (B:27-117) Cy 12.8 10 0.00074 24.7 -1.6 20 235-254 27-46 (91)
5 d3ehbb2 f.17.2.1 (B:1-107) Bac 7.9 1.9E+02 0.014 18.6 3.7 22 233-254 42-63 (107)
6 d2h8pc1 f.14.1.1 (C:22-78) Pot 6.8 2.3E+02 0.017 16.0 4.1 29 228-256 5-33 (57)
7 d1q90g_ f.23.26.1 (G:) PetG su 5.2 2.1E+02 0.015 13.8 1.9 11 15-25 4-14 (30)
8 d2ae9a1 a.237.1.1 (A:1-76) The 5.0 1.3E+02 0.0093 18.3 1.3 18 59-76 49-66 (76)
9 d1v54d_ f.23.1.1 (D:) Mitochon 4.2 2.1E+02 0.015 19.7 2.1 57 227-284 74-130 (144)
10 d2dasa1 g.39.1.17 (A:8-56) Zin 3.6 2.8E+02 0.02 15.2 1.8 25 266-290 7-31 (49)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=24.92 E-value=39 Score=19.92 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhcccc-cCCCCCCc
Q 022888 151 ITGAGIQGLMILGGGFF-RLPNDLPH 175 (290)
Q Consensus 151 ~i~~~~~~~~~l~sG~~-~~~~~~p~ 175 (290)
.+.+.++.|..+.+|++ .+.+++|.
T Consensus 10 T~it~iflP~t~i~gifGMN~~~~P~ 35 (64)
T d2iuba2 10 TIIATIFMPLTFIAGIYGMNFEYMPE 35 (64)
T ss_dssp HHHHHHHHHHHHHTTSCC--------
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCC
Confidence 45566788888999998 67777775
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=23.65 E-value=49 Score=17.10 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=15.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHh
Q 022888 4 DLGYYWFRLGVYVLLGIGLATVFS 27 (290)
Q Consensus 4 ~~~~~~~~~~~~~~~~li~G~~f~ 27 (290)
|+..++..+++.++.|+++...|+
T Consensus 13 NrtsLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 13 NRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHhc
Confidence 445556666666777777776665
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=14.95 E-value=86 Score=20.08 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 022888 231 LAILFGMVVFYRLVFLGIIKTVEK 254 (290)
Q Consensus 231 ~~iL~~~~v~~~~l~~~~l~~~~~ 254 (290)
.++.+.+.++.-.+.++..|+|++
T Consensus 34 ~i~~~I~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 34 VIIAAITIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcc
Confidence 344444455556666666666544
No 4
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=12.79 E-value=10 Score=24.68 Aligned_cols=20 Identities=5% Similarity=-0.237 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 022888 235 FGMVVFYRLVFLGIIKTVEK 254 (290)
Q Consensus 235 ~~~~v~~~~l~~~~l~~~~~ 254 (290)
+.+.+++..+.++..|+|++
T Consensus 27 iv~v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 27 IVVIPAILMAVGFAWKYRAS 46 (91)
T ss_dssp TTTTHHHHHHHTTTTTTTTS
T ss_pred HHHHHHHHHHHhhheeeecc
Confidence 33444555556666666544
No 5
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=7.87 E-value=1.9e+02 Score=18.57 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 022888 233 ILFGMVVFYRLVFLGIIKTVEK 254 (290)
Q Consensus 233 iL~~~~v~~~~l~~~~l~~~~~ 254 (290)
+...+.++...+.+...|+|++
T Consensus 42 ~~~I~~~V~~~~~~~~~~~r~~ 63 (107)
T d3ehbb2 42 ITAVTIFVCLLLLICIVRFNRR 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHSBTT
T ss_pred HHHHHHHHHHHHHHHhhhhhcc
Confidence 3333344444555666665443
No 6
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.84 E-value=2.3e+02 Score=16.02 Aligned_cols=29 Identities=14% Similarity=0.045 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 022888 228 WVDLAILFGMVVFYRLVFLGIIKTVEKMK 256 (290)
Q Consensus 228 ~~~~~iL~~~~v~~~~l~~~~l~~~~~~~ 256 (290)
|+.++.+..+.++..+++-..+...++..
T Consensus 5 ~R~~~~~~~~~~i~i~~~s~~~y~~E~~~ 33 (57)
T d2h8pc1 5 WRAAGAATVLLVIVLLAGSYLAVLAERGA 33 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 56666666666555555555555555543
No 7
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.20 E-value=2.1e+02 Score=13.79 Aligned_cols=11 Identities=45% Similarity=0.458 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 022888 15 YVLLGIGLATV 25 (290)
Q Consensus 15 ~~~~~li~G~~ 25 (290)
+.+.|+++|.+
T Consensus 4 ~ll~GivlGli 14 (30)
T d1q90g_ 4 PLLCGIVLGLV 14 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhHHHhhH
Confidence 34445555443
No 8
>d2ae9a1 a.237.1.1 (A:1-76) Theta subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}
Probab=5.05 E-value=1.3e+02 Score=18.32 Aligned_cols=18 Identities=11% Similarity=0.021 Sum_probs=13.1
Q ss_pred hhhhhhHHHHHHHHhCCC
Q 022888 59 PSFVEDMKVFERERLNGH 76 (290)
Q Consensus 59 ~~~~~er~v~~rE~~~g~ 76 (290)
..++.||..+.|..+...
T Consensus 49 R~yF~eRL~~yR~~s~~~ 66 (76)
T d2ae9a1 49 RSWFRERLIAHRLASVNL 66 (76)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 447788888888777654
No 9
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.19 E-value=2.1e+02 Score=19.74 Aligned_cols=57 Identities=16% Similarity=0.129 Sum_probs=30.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhcccchhhccccccccccccccCCCCCCCcc
Q 022888 227 KWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMSVPMKQTTQIMENPCATPPQE 284 (290)
Q Consensus 227 ~~~~~~iL~~~~v~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (290)
-|..++....+.+.+.++.++..+..-. .+.++.+..+.++...+++.+-...|-.|
T Consensus 74 ewK~v~g~~~~~i~~s~~i~~~~r~~v~-p~~P~T~~~Ewqeaq~erm~~~~~nPitG 130 (144)
T d1v54d_ 74 EWKTVVGAAMFFIGFTALLLIWEKHYVY-GPIPHTFEEEWVAKQTKRMLDMKVAPIQG 130 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC-CCCCGGGSHHHHHHHHHHHHHTTSSTTTT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCCHHHHHHHHHHHHHcCCCCCCC
Confidence 5666555555555554444444443222 23356777666666666666555555443
No 10
>d2dasa1 g.39.1.17 (A:8-56) Zinc finger MYM-type protein 5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.60 E-value=2.8e+02 Score=15.17 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=18.5
Q ss_pred ccccccccccCCCCCCCccCccccC
Q 022888 266 PMKQTTQIMENPCATPPQEDKIFYQ 290 (290)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (290)
.+.+++|..-..|..|.+...-+||
T Consensus 7 ~p~~a~~v~Ca~Ckk~lqKGQTAyq 31 (49)
T d2dasa1 7 QLTKPAKITCANCKKPLQKGQTAYQ 31 (49)
T ss_dssp CCSSCSSCBCTTTCCBCCTTSCCEE
T ss_pred CCCCceEeEecccchHHhccchHHh
Confidence 3455677777888888888777776
Done!