Query 022889
Match_columns 290
No_of_seqs 142 out of 1582
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 06:53:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 3E-54 6.5E-59 383.6 28.6 256 1-275 47-312 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 6E-54 1.3E-58 374.9 27.5 266 1-276 58-329 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 1.2E-50 2.7E-55 347.9 22.8 220 1-275 42-267 (280)
4 TIGR01293 Kv_beta voltage-depe 100.0 2.9E-49 6.2E-54 353.9 27.1 258 1-270 43-316 (317)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 3.2E-49 7E-54 357.2 26.9 263 1-274 57-335 (346)
6 PF00248 Aldo_ket_red: Aldo/ke 100.0 2.4E-48 5.3E-53 342.9 23.2 245 1-271 31-282 (283)
7 PRK10625 tas putative aldo-ket 100.0 2.4E-47 5.2E-52 345.3 28.5 260 1-273 44-340 (346)
8 PRK11172 dkgB 2,5-diketo-D-glu 100.0 3.3E-47 7.2E-52 332.6 25.0 219 1-275 30-255 (267)
9 PLN02587 L-galactose dehydroge 100.0 3.9E-46 8.4E-51 333.3 27.4 245 1-275 45-303 (314)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 2.8E-45 6.1E-50 323.7 24.9 236 1-269 43-284 (285)
11 PRK14863 bifunctional regulato 100.0 3.6E-45 7.9E-50 323.0 20.9 230 1-269 46-279 (292)
12 PRK10376 putative oxidoreducta 100.0 2.4E-44 5.2E-49 318.2 25.9 226 1-272 54-288 (290)
13 PRK11565 dkgA 2,5-diketo-D-glu 100.0 3.1E-44 6.8E-49 314.9 23.0 222 1-275 42-265 (275)
14 KOG1577 Aldo/keto reductase fa 100.0 2.4E-44 5.1E-49 309.2 20.8 230 1-275 42-288 (300)
15 COG4989 Predicted oxidoreducta 100.0 3.7E-43 8.1E-48 289.9 19.6 236 1-272 45-293 (298)
16 COG1453 Predicted oxidoreducta 100.0 1.5E-38 3.3E-43 276.3 18.9 227 1-276 48-289 (391)
17 KOG1576 Predicted oxidoreducta 100.0 3.9E-37 8.5E-42 256.1 23.2 260 1-288 68-341 (342)
18 KOG3023 Glutamate-cysteine lig 97.9 2.3E-05 5.1E-10 65.5 6.6 72 83-155 155-227 (285)
19 cd04728 ThiG Thiazole synthase 87.1 18 0.0004 31.0 12.9 107 45-154 71-181 (248)
20 PF07021 MetW: Methionine bios 84.2 7.4 0.00016 32.1 8.0 113 46-161 43-172 (193)
21 cd03174 DRE_TIM_metallolyase D 82.8 7.4 0.00016 33.5 8.1 106 46-155 15-135 (265)
22 PRK10558 alpha-dehydro-beta-de 81.1 16 0.00034 31.8 9.3 67 90-157 10-78 (256)
23 COG2022 ThiG Uncharacterized e 79.9 37 0.00081 29.0 11.0 110 45-157 78-191 (262)
24 cd06543 GH18_PF-ChiA-like PF-C 79.8 33 0.00071 30.5 11.1 84 12-96 53-136 (294)
25 COG1140 NarY Nitrate reductase 77.0 1.5 3.2E-05 39.7 1.7 54 97-150 264-317 (513)
26 TIGR03239 GarL 2-dehydro-3-deo 74.8 31 0.00068 29.8 9.3 66 91-157 4-71 (249)
27 PF07994 NAD_binding_5: Myo-in 74.6 17 0.00037 32.3 7.7 141 49-242 131-279 (295)
28 TIGR01378 thi_PPkinase thiamin 74.3 31 0.00068 28.7 9.0 40 216-255 71-110 (203)
29 PRK10128 2-keto-3-deoxy-L-rham 72.9 44 0.00096 29.2 9.9 67 90-157 9-77 (267)
30 PLN02363 phosphoribosylanthran 71.7 26 0.00056 30.4 8.1 75 48-130 56-131 (256)
31 PRK06424 transcription factor; 71.4 15 0.00032 28.9 6.0 59 203-261 84-142 (144)
32 PRK00208 thiG thiazole synthas 70.7 70 0.0015 27.6 17.3 107 45-154 71-181 (250)
33 TIGR01228 hutU urocanate hydra 69.1 15 0.00032 34.8 6.3 59 59-125 194-252 (545)
34 COG2987 HutU Urocanate hydrata 69.1 10 0.00022 35.4 5.1 61 60-128 204-264 (561)
35 PRK05414 urocanate hydratase; 69.1 15 0.00033 34.9 6.3 59 59-125 203-261 (556)
36 PRK06015 keto-hydroxyglutarate 67.1 27 0.00059 29.1 7.0 88 48-153 14-102 (201)
37 TIGR01182 eda Entner-Doudoroff 66.5 27 0.00059 29.2 6.9 88 48-153 18-106 (204)
38 PRK07328 histidinol-phosphatas 66.3 88 0.0019 27.1 11.0 98 55-153 96-226 (269)
39 PRK01222 N-(5'-phosphoribosyl) 65.0 48 0.0011 27.7 8.3 66 61-130 20-86 (210)
40 COG2102 Predicted ATPases of P 64.8 22 0.00047 30.1 5.9 102 83-220 75-177 (223)
41 PRK13958 N-(5'-phosphoribosyl) 64.4 25 0.00055 29.4 6.4 67 60-130 17-84 (207)
42 cd01948 EAL EAL domain. This d 64.1 49 0.0011 27.5 8.3 102 50-155 98-209 (240)
43 COG0135 TrpF Phosphoribosylant 64.0 69 0.0015 26.9 8.8 82 60-152 18-102 (208)
44 PRK05692 hydroxymethylglutaryl 63.2 1.1E+02 0.0023 27.1 15.7 106 46-154 22-139 (287)
45 cd00308 enolase_like Enolase-s 63.1 71 0.0015 26.8 9.1 87 68-160 120-208 (229)
46 cd00423 Pterin_binding Pterin 62.4 1E+02 0.0022 26.6 10.2 104 47-157 21-129 (258)
47 PF01081 Aldolase: KDPG and KH 60.0 34 0.00074 28.4 6.3 58 88-153 48-106 (196)
48 PF00809 Pterin_bind: Pterin b 58.1 38 0.00082 28.3 6.4 89 62-157 30-125 (210)
49 PRK08195 4-hyroxy-2-oxovalerat 57.0 1.5E+02 0.0032 26.9 10.4 105 45-154 20-134 (337)
50 PRK09613 thiH thiamine biosynt 56.9 1.8E+02 0.004 27.7 12.2 108 46-156 114-240 (469)
51 TIGR02026 BchE magnesium-proto 56.5 1.8E+02 0.004 27.8 11.5 107 47-157 222-345 (497)
52 PRK07535 methyltetrahydrofolat 56.5 1.3E+02 0.0029 26.0 12.4 100 48-156 23-124 (261)
53 PF01175 Urocanase: Urocanase; 55.6 29 0.00062 33.1 5.6 59 59-125 193-251 (546)
54 PRK14461 ribosomal RNA large s 55.3 97 0.0021 28.5 8.9 89 71-159 232-352 (371)
55 cd07943 DRE_TIM_HOA 4-hydroxy- 55.1 1.3E+02 0.0028 26.0 9.5 106 46-154 18-131 (263)
56 PRK06552 keto-hydroxyglutarate 54.1 62 0.0013 27.2 7.0 88 48-153 23-114 (213)
57 TIGR02311 HpaI 2,4-dihydroxyhe 54.0 1.4E+02 0.0031 25.6 10.9 66 90-156 3-70 (249)
58 TIGR01496 DHPS dihydropteroate 53.9 1.5E+02 0.0032 25.7 10.8 101 47-156 20-126 (257)
59 PRK08392 hypothetical protein; 53.7 1.3E+02 0.0028 25.1 9.9 82 65-153 86-179 (215)
60 cd00419 Ferrochelatase_C Ferro 53.7 1E+02 0.0022 23.8 7.8 83 15-98 7-91 (135)
61 PRK13803 bifunctional phosphor 52.2 1.6E+02 0.0034 29.1 10.5 96 48-152 12-108 (610)
62 PLN02746 hydroxymethylglutaryl 52.2 1.9E+02 0.0041 26.4 14.9 104 46-154 64-181 (347)
63 COG1151 6Fe-6S prismane cluste 51.7 1E+02 0.0022 29.8 8.7 94 50-152 360-464 (576)
64 COG1121 ZnuC ABC-type Mn/Zn tr 51.5 85 0.0018 27.3 7.5 67 48-117 113-207 (254)
65 PRK09427 bifunctional indole-3 51.0 1.1E+02 0.0023 29.1 8.8 73 48-131 266-339 (454)
66 COG4130 Predicted sugar epimer 50.8 1.5E+02 0.0032 25.2 8.4 82 107-217 49-136 (272)
67 PF05690 ThiG: Thiazole biosyn 50.8 1.6E+02 0.0035 25.3 15.5 108 45-155 71-182 (247)
68 TIGR02026 BchE magnesium-proto 50.7 2.3E+02 0.005 27.1 12.5 72 83-156 224-305 (497)
69 COG0159 TrpA Tryptophan syntha 50.7 1.7E+02 0.0037 25.5 10.8 44 224-269 197-242 (265)
70 TIGR03217 4OH_2_O_val_ald 4-hy 50.7 1.9E+02 0.0042 26.1 10.8 104 45-153 19-132 (333)
71 TIGR03070 couple_hipB transcri 50.5 24 0.00053 22.0 3.3 28 206-233 5-32 (58)
72 PRK02866 cyanate hydratase; Va 50.1 42 0.00091 26.5 5.0 64 206-271 8-71 (147)
73 TIGR03822 AblA_like_2 lysine-2 49.8 1.9E+02 0.0042 25.9 12.8 90 71-161 140-240 (321)
74 TIGR01928 menC_lowGC/arch o-su 49.2 75 0.0016 28.5 7.3 88 68-161 198-287 (324)
75 TIGR00284 dihydropteroate synt 48.1 2.6E+02 0.0057 26.9 10.9 94 50-155 165-258 (499)
76 cd03315 MLE_like Muconate lact 48.0 1.4E+02 0.003 25.7 8.6 74 87-161 169-244 (265)
77 COG4152 ABC-type uncharacteriz 47.7 1.9E+02 0.0042 25.3 8.9 70 46-117 101-198 (300)
78 PRK06740 histidinol-phosphatas 47.5 2.2E+02 0.0047 25.7 10.9 99 54-153 156-289 (331)
79 PRK13753 dihydropteroate synth 47.5 2E+02 0.0043 25.4 11.9 103 47-158 22-129 (279)
80 TIGR00381 cdhD CO dehydrogenas 46.7 2.4E+02 0.0052 26.1 12.8 105 50-161 128-253 (389)
81 smart00052 EAL Putative diguan 46.5 1.4E+02 0.0029 24.7 8.2 99 52-155 101-210 (241)
82 PRK07945 hypothetical protein; 44.8 2.4E+02 0.0052 25.5 10.3 81 66-152 192-288 (335)
83 PF00356 LacI: Bacterial regul 44.8 48 0.001 20.4 3.7 42 208-257 2-43 (46)
84 cd03318 MLE Muconate Lactonizi 43.4 1.2E+02 0.0026 27.6 7.7 73 87-160 228-302 (365)
85 COG1751 Uncharacterized conser 43.2 1.7E+02 0.0037 23.3 9.4 87 71-159 2-94 (186)
86 COG2355 Zn-dependent dipeptida 42.2 1.1E+02 0.0025 27.3 7.1 29 238-268 270-299 (313)
87 PRK04452 acetyl-CoA decarbonyl 42.2 2.6E+02 0.0056 25.2 12.0 93 60-157 85-184 (319)
88 PRK02399 hypothetical protein; 41.3 77 0.0017 29.5 6.0 41 55-102 200-240 (406)
89 cd00739 DHPS DHPS subgroup of 41.3 2.4E+02 0.0051 24.4 12.0 103 47-156 21-128 (257)
90 PF11242 DUF2774: Protein of u 41.0 40 0.00086 22.3 3.0 23 206-228 14-36 (63)
91 PF05368 NmrA: NmrA-like famil 40.8 1.1E+02 0.0023 25.5 6.7 84 67-160 22-106 (233)
92 PRK11840 bifunctional sulfur c 40.8 2.8E+02 0.006 25.1 14.3 74 45-119 145-218 (326)
93 TIGR01502 B_methylAsp_ase meth 40.7 1.7E+02 0.0037 27.4 8.3 72 85-157 279-357 (408)
94 TIGR00035 asp_race aspartate r 40.7 2E+02 0.0042 24.3 8.2 69 48-117 15-95 (229)
95 PRK00730 rnpA ribonuclease P; 40.7 1.6E+02 0.0034 23.0 6.8 50 47-97 60-111 (138)
96 PRK15108 biotin synthase; Prov 40.5 2.8E+02 0.0061 25.1 12.1 110 47-160 76-196 (345)
97 PRK10200 putative racemase; Pr 39.7 2.2E+02 0.0048 24.1 8.4 68 48-116 15-93 (230)
98 PRK07114 keto-hydroxyglutarate 39.6 1.7E+02 0.0037 24.8 7.5 91 48-153 25-117 (222)
99 COG0635 HemN Coproporphyrinoge 39.6 2.2E+02 0.0047 26.7 8.9 61 47-109 201-276 (416)
100 cd07948 DRE_TIM_HCS Saccharomy 39.2 2.6E+02 0.0056 24.3 12.4 102 46-155 18-132 (262)
101 TIGR02534 mucon_cyclo muconate 38.8 1.5E+02 0.0032 27.1 7.6 74 87-161 227-302 (368)
102 PRK09726 antitoxin HipB; Provi 38.8 54 0.0012 23.1 3.8 56 205-260 14-69 (88)
103 cd07939 DRE_TIM_NifV Streptomy 38.7 2.6E+02 0.0055 24.1 14.5 99 46-152 16-127 (259)
104 COG1179 Dinucleotide-utilizing 38.5 1.2E+02 0.0025 26.3 6.2 17 139-155 137-153 (263)
105 TIGR00048 radical SAM enzyme, 38.0 3.2E+02 0.0069 25.0 9.9 89 71-159 219-333 (355)
106 cd03322 rpsA The starvation se 37.4 2.2E+02 0.0048 25.9 8.5 84 68-157 189-274 (361)
107 PRK04390 rnpA ribonuclease P; 36.7 1.7E+02 0.0036 22.1 6.4 50 47-96 59-110 (120)
108 COG4555 NatA ABC-type Na+ tran 36.1 1.9E+02 0.004 24.6 6.9 70 46-117 104-201 (245)
109 PRK03031 rnpA ribonuclease P; 35.8 1.7E+02 0.0036 22.1 6.3 50 47-96 62-114 (122)
110 cd03317 NAAAR N-acylamino acid 35.8 1.9E+02 0.0041 26.1 7.8 87 68-160 203-291 (354)
111 PF14871 GHL6: Hypothetical gl 35.5 35 0.00076 26.3 2.5 24 135-158 44-67 (132)
112 cd03316 MR_like Mandelate race 35.2 2.4E+02 0.0051 25.4 8.4 69 87-156 229-299 (357)
113 TIGR01428 HAD_type_II 2-haloal 35.2 1.3E+02 0.0028 24.3 6.2 63 52-117 61-127 (198)
114 PRK01313 rnpA ribonuclease P; 35.2 2.1E+02 0.0045 22.0 6.7 49 47-95 61-113 (129)
115 cd03327 MR_like_2 Mandelate ra 35.2 2.3E+02 0.005 25.5 8.2 69 86-155 210-280 (341)
116 PRK10060 RNase II stability mo 34.7 3.7E+02 0.008 26.7 10.2 100 51-155 508-618 (663)
117 PRK05588 histidinol-phosphatas 34.6 2.9E+02 0.0063 23.6 12.6 103 53-156 80-217 (255)
118 PRK15072 bifunctional D-altron 34.4 3.6E+02 0.0079 25.0 9.5 70 87-157 246-317 (404)
119 PRK08609 hypothetical protein; 34.0 2.9E+02 0.0063 27.1 9.1 80 66-151 430-521 (570)
120 PF04263 TPK_catalytic: Thiami 33.9 93 0.002 23.6 4.6 40 216-255 69-108 (123)
121 PRK13352 thiamine biosynthesis 33.8 1.6E+02 0.0036 27.4 6.8 94 85-218 122-221 (431)
122 PF01402 RHH_1: Ribbon-helix-h 33.5 81 0.0018 18.1 3.4 21 204-224 10-30 (39)
123 PRK11359 cyclic-di-GMP phospho 33.3 2.7E+02 0.0058 28.0 9.2 99 52-155 646-755 (799)
124 cd03770 SR_TndX_transposase Se 33.3 84 0.0018 24.2 4.4 20 86-105 56-75 (140)
125 cd00668 Ile_Leu_Val_MetRS_core 33.2 63 0.0014 28.7 4.2 48 50-101 82-131 (312)
126 cd04742 NPD_FabD 2-Nitropropan 33.0 2.3E+02 0.0049 26.6 7.8 89 60-156 7-103 (418)
127 PF06506 PrpR_N: Propionate ca 32.8 1.4E+02 0.003 24.0 5.8 67 83-155 63-132 (176)
128 PRK05718 keto-hydroxyglutarate 32.8 2.2E+02 0.0047 23.9 7.1 87 48-152 25-112 (212)
129 COG0626 MetC Cystathionine bet 32.6 2.7E+02 0.0059 25.9 8.2 83 83-165 112-196 (396)
130 PRK13796 GTPase YqeH; Provisio 32.5 3.4E+02 0.0073 24.8 8.9 67 48-116 114-180 (365)
131 cd03319 L-Ala-DL-Glu_epimerase 32.4 1.5E+02 0.0032 26.3 6.5 73 87-160 217-291 (316)
132 COG1564 THI80 Thiamine pyropho 32.4 1.2E+02 0.0026 25.6 5.3 43 214-256 74-116 (212)
133 PRK10551 phage resistance prot 32.4 1.7E+02 0.0038 28.1 7.3 100 50-155 364-474 (518)
134 cd07944 DRE_TIM_HOA_like 4-hyd 32.4 3.4E+02 0.0073 23.6 13.8 104 46-153 16-127 (266)
135 PRK02901 O-succinylbenzoate sy 32.3 3.8E+02 0.0082 24.2 9.7 72 87-161 173-245 (327)
136 TIGR00673 cynS cyanate hydrata 32.3 1E+02 0.0022 24.4 4.6 63 206-270 11-73 (150)
137 PLN02428 lipoic acid synthase 32.3 3.5E+02 0.0075 24.7 8.7 99 57-157 195-323 (349)
138 PRK14017 galactonate dehydrata 32.1 3.8E+02 0.0082 24.6 9.2 70 87-157 217-288 (382)
139 PF06792 UPF0261: Uncharacteri 31.9 1.7E+02 0.0036 27.3 6.6 40 56-102 200-239 (403)
140 PLN02489 homocysteine S-methyl 31.8 3.9E+02 0.0084 24.1 13.9 103 47-155 160-274 (335)
141 PF07287 DUF1446: Protein of u 31.6 1.5E+02 0.0032 27.2 6.3 18 138-155 61-78 (362)
142 PRK12928 lipoyl synthase; Prov 31.5 3.7E+02 0.0079 23.8 12.5 74 45-119 85-163 (290)
143 PF01381 HTH_3: Helix-turn-hel 31.4 21 0.00045 22.3 0.6 47 210-256 3-49 (55)
144 PRK14464 ribosomal RNA large s 31.3 4.1E+02 0.0088 24.2 9.2 77 83-159 225-317 (344)
145 cd01321 ADGF Adenosine deamina 31.3 4E+02 0.0087 24.1 13.2 124 29-153 84-251 (345)
146 PRK14456 ribosomal RNA large s 31.1 3.7E+02 0.0079 24.7 8.8 78 82-159 260-353 (368)
147 TIGR01927 menC_gamma/gm+ o-suc 31.0 3.8E+02 0.0082 23.8 9.0 86 68-161 183-270 (307)
148 cd07995 TPK Thiamine pyrophosp 30.7 94 0.002 25.8 4.6 40 216-255 75-114 (208)
149 cd03323 D-glucarate_dehydratas 30.6 3.1E+02 0.0067 25.4 8.4 73 87-160 250-324 (395)
150 COG3172 NadR Predicted ATPase/ 30.4 2E+02 0.0043 23.4 5.9 89 1-97 81-185 (187)
151 TIGR01290 nifB nitrogenase cof 30.1 4.8E+02 0.01 24.6 10.0 110 46-161 59-200 (442)
152 PF01053 Cys_Met_Meta_PP: Cys/ 30.0 2.1E+02 0.0045 26.5 7.1 82 83-164 104-187 (386)
153 PHA01976 helix-turn-helix prot 29.9 55 0.0012 21.3 2.5 26 206-231 5-30 (67)
154 cd03325 D-galactonate_dehydrat 29.8 4.2E+02 0.0091 23.9 9.3 69 86-155 215-285 (352)
155 PF13407 Peripla_BP_4: Peripla 29.8 2.5E+02 0.0055 23.3 7.3 73 49-128 13-89 (257)
156 PRK14459 ribosomal RNA large s 29.7 4.5E+02 0.0098 24.2 10.5 89 71-159 242-359 (373)
157 PRK08776 cystathionine gamma-s 29.6 4.6E+02 0.0099 24.3 11.1 77 84-160 110-187 (405)
158 PF13378 MR_MLE_C: Enolase C-t 28.9 77 0.0017 23.1 3.4 54 105-160 3-57 (111)
159 PF11020 DUF2610: Domain of un 28.9 1.4E+02 0.003 20.8 4.2 28 198-225 47-74 (82)
160 PF00762 Ferrochelatase: Ferro 28.5 2.9E+02 0.0064 24.7 7.6 111 29-158 185-298 (316)
161 TIGR02660 nifV_homocitr homoci 28.1 4.7E+02 0.01 23.9 15.3 99 46-152 19-130 (365)
162 COG0820 Predicted Fe-S-cluster 28.0 4.7E+02 0.01 23.9 9.3 88 71-159 216-330 (349)
163 cd08319 Death_RAIDD Death doma 27.9 80 0.0017 22.2 3.1 68 50-125 10-79 (83)
164 TIGR03550 F420_cofG 7,8-dideme 27.9 4.4E+02 0.0095 23.5 11.5 112 45-157 33-171 (322)
165 COG1149 MinD superfamily P-loo 27.9 1.3E+02 0.0028 26.5 4.9 89 59-159 155-250 (284)
166 PRK11267 biopolymer transport 27.6 2E+02 0.0043 22.2 5.7 55 46-106 80-134 (141)
167 COG2185 Sbm Methylmalonyl-CoA 27.5 2.5E+02 0.0053 22.1 6.0 58 100-162 18-77 (143)
168 cd00338 Ser_Recombinase Serine 27.3 1.3E+02 0.0027 22.6 4.5 45 53-97 51-95 (137)
169 KOG0059 Lipid exporter ABCA1 a 27.2 3.6E+02 0.0078 28.0 8.9 70 46-117 669-766 (885)
170 COG2606 EbsC Uncharacterized c 27.2 82 0.0018 25.1 3.4 62 208-269 29-94 (155)
171 PRK11024 colicin uptake protei 27.2 1.9E+02 0.004 22.4 5.4 53 48-106 86-138 (141)
172 PRK14455 ribosomal RNA large s 27.0 4.3E+02 0.0093 24.1 8.5 77 83-159 245-337 (356)
173 PRK14457 ribosomal RNA large s 27.0 4.8E+02 0.01 23.7 11.5 93 67-159 212-330 (345)
174 PF01890 CbiG_C: Cobalamin syn 26.9 1.2E+02 0.0027 22.8 4.2 52 106-157 11-67 (121)
175 TIGR00216 ispH_lytB (E)-4-hydr 26.7 4.1E+02 0.0088 23.5 7.9 43 206-251 224-272 (280)
176 COG1104 NifS Cysteine sulfinat 26.6 2.4E+02 0.0053 26.1 6.7 77 84-160 102-183 (386)
177 PRK10508 hypothetical protein; 26.6 1.3E+02 0.0029 27.1 5.1 42 48-95 287-328 (333)
178 PRK07329 hypothetical protein; 26.4 4.1E+02 0.0088 22.6 14.5 102 54-156 83-216 (246)
179 PF10668 Phage_terminase: Phag 26.0 66 0.0014 21.2 2.2 17 207-223 24-40 (60)
180 PF00682 HMGL-like: HMGL-like 25.9 3.9E+02 0.0085 22.3 8.3 98 47-151 11-124 (237)
181 TIGR00676 fadh2 5,10-methylene 25.9 4.4E+02 0.0096 22.9 13.8 106 46-161 69-192 (272)
182 cd03314 MAL Methylaspartate am 25.8 5.3E+02 0.011 23.7 9.8 86 70-157 229-321 (369)
183 PF13518 HTH_28: Helix-turn-he 25.7 85 0.0018 19.1 2.7 22 207-229 14-35 (52)
184 TIGR00221 nagA N-acetylglucosa 25.7 1.6E+02 0.0034 27.2 5.4 37 85-121 178-214 (380)
185 cd00818 IleRS_core catalytic c 25.4 96 0.0021 28.0 4.0 44 52-99 89-134 (338)
186 PRK08247 cystathionine gamma-s 25.0 4.5E+02 0.0098 23.8 8.4 62 100-161 117-179 (366)
187 TIGR00677 fadh2_euk methylenet 24.9 4.7E+02 0.01 22.9 12.3 66 83-151 112-190 (281)
188 cd03320 OSBS o-Succinylbenzoat 24.9 3.9E+02 0.0084 22.9 7.6 72 87-160 167-239 (263)
189 CHL00162 thiG thiamin biosynth 24.8 4.7E+02 0.01 22.8 12.8 110 45-157 79-198 (267)
190 PRK01045 ispH 4-hydroxy-3-meth 24.6 5E+02 0.011 23.1 8.5 43 206-251 226-274 (298)
191 PRK14466 ribosomal RNA large s 24.6 5.4E+02 0.012 23.4 10.3 90 70-159 210-325 (345)
192 PF02401 LYTB: LytB protein; 24.4 2.3E+02 0.005 25.0 6.0 44 206-252 225-274 (281)
193 PRK14462 ribosomal RNA large s 24.4 5.5E+02 0.012 23.5 10.5 77 83-159 246-338 (356)
194 cd00248 Mth938-like Mth938-lik 24.3 2.5E+02 0.0053 20.7 5.4 53 104-157 36-88 (109)
195 COG0276 HemH Protoheme ferro-l 24.3 3.9E+02 0.0084 24.1 7.4 60 9-76 134-194 (320)
196 PRK01732 rnpA ribonuclease P; 24.1 3.1E+02 0.0067 20.4 6.2 49 48-96 61-111 (114)
197 cd00740 MeTr MeTr subgroup of 24.0 4.7E+02 0.01 22.5 11.7 106 47-160 23-131 (252)
198 COG0800 Eda 2-keto-3-deoxy-6-p 23.9 4.1E+02 0.0089 22.4 7.0 60 83-153 51-111 (211)
199 PRK10128 2-keto-3-deoxy-L-rham 23.6 3.4E+02 0.0074 23.7 6.9 69 63-133 165-244 (267)
200 TIGR01329 cysta_beta_ly_E cyst 23.5 5.7E+02 0.012 23.3 9.1 58 104-161 116-174 (378)
201 PRK00499 rnpA ribonuclease P; 23.2 3.2E+02 0.0068 20.2 6.0 50 47-96 52-104 (114)
202 KOG0077 Vesicle coat complex C 23.1 1.4E+02 0.003 24.4 3.9 48 83-131 7-54 (193)
203 PF12844 HTH_19: Helix-turn-he 23.1 42 0.00091 21.7 0.9 51 206-256 2-52 (64)
204 PF14502 HTH_41: Helix-turn-he 23.0 1.1E+02 0.0023 19.2 2.6 29 206-234 7-37 (48)
205 TIGR03597 GTPase_YqeH ribosome 22.9 5.8E+02 0.013 23.2 9.1 67 48-116 108-174 (360)
206 PF07745 Glyco_hydro_53: Glyco 22.9 2E+02 0.0043 26.1 5.4 66 200-275 213-281 (332)
207 PRK09943 DNA-binding transcrip 22.8 90 0.002 25.3 3.0 54 205-258 9-62 (185)
208 CHL00076 chlB photochlorophyll 22.6 7E+02 0.015 24.0 12.6 91 68-158 117-248 (513)
209 PRK03459 rnpA ribonuclease P; 22.6 3.5E+02 0.0075 20.5 6.8 49 48-96 63-114 (122)
210 PF13467 RHH_4: Ribbon-helix-h 22.5 1.2E+02 0.0027 20.4 3.1 26 205-230 23-48 (67)
211 PF13380 CoA_binding_2: CoA bi 22.5 2.2E+02 0.0047 21.2 4.8 53 97-155 54-109 (116)
212 COG2069 CdhD CO dehydrogenase/ 22.5 5.7E+02 0.012 22.9 10.6 92 59-158 159-261 (403)
213 PRK07027 cobalamin biosynthesi 22.4 2E+02 0.0043 21.9 4.6 56 101-156 5-68 (126)
214 COG0761 lytB 4-Hydroxy-3-methy 22.3 2.8E+02 0.006 24.6 5.9 44 206-252 228-277 (294)
215 PF13443 HTH_26: Cro/C1-type H 22.2 39 0.00085 21.8 0.6 15 209-223 3-17 (63)
216 PF06897 DUF1269: Protein of u 22.2 2.6E+02 0.0057 20.4 5.1 42 231-272 54-100 (102)
217 TIGR03247 glucar-dehydr glucar 21.9 4.9E+02 0.011 24.6 8.0 70 87-157 268-338 (441)
218 cd00814 MetRS_core catalytic c 21.9 1.3E+02 0.0028 26.8 4.1 46 50-99 69-114 (319)
219 smart00642 Aamy Alpha-amylase 21.9 1.1E+02 0.0023 24.6 3.2 23 137-159 72-94 (166)
220 TIGR03821 AblA_like_1 lysine-2 21.8 5.8E+02 0.013 22.8 11.8 75 86-161 161-246 (321)
221 TIGR02090 LEU1_arch isopropylm 21.6 6.2E+02 0.014 23.1 11.1 99 46-152 18-129 (363)
222 TIGR02607 antidote_HigA addict 21.5 2.5E+02 0.0054 18.7 4.7 64 206-271 7-71 (78)
223 PF00697 PRAI: N-(5'phosphorib 21.4 3.5E+02 0.0075 22.2 6.3 67 59-131 14-81 (197)
224 TIGR02080 O_succ_thio_ly O-suc 21.4 6.4E+02 0.014 23.1 11.0 77 84-160 101-178 (382)
225 PRK09536 btuD corrinoid ABC tr 21.1 2.5E+02 0.0054 26.1 5.9 75 85-160 278-352 (402)
226 smart00857 Resolvase Resolvase 21.1 2.9E+02 0.0063 20.9 5.6 21 85-105 52-72 (148)
227 PLN02775 Probable dihydrodipic 20.9 5.9E+02 0.013 22.5 8.0 73 54-131 66-138 (286)
228 PRK09248 putative hydrolase; V 20.9 5.2E+02 0.011 21.9 9.9 83 70-155 98-192 (246)
229 PF07611 DUF1574: Protein of u 20.8 1.6E+02 0.0035 26.8 4.4 23 137-159 254-276 (345)
230 PRK04820 rnpA ribonuclease P; 20.6 4.3E+02 0.0092 20.8 6.7 50 47-96 63-114 (145)
231 TIGR02698 CopY_TcrY copper tra 20.6 2.4E+02 0.0053 21.5 4.8 29 257-285 100-128 (130)
232 COG0420 SbcD DNA repair exonuc 20.5 2.3E+02 0.005 25.9 5.6 62 48-109 21-87 (390)
233 cd00093 HTH_XRE Helix-turn-hel 20.5 1.1E+02 0.0025 17.8 2.6 17 209-225 5-21 (58)
234 PRK06361 hypothetical protein; 20.5 4.8E+02 0.01 21.4 12.6 124 56-227 77-201 (212)
235 TIGR02814 pfaD_fam PfaD family 20.1 5.3E+02 0.011 24.5 7.7 65 91-156 37-108 (444)
236 cd03321 mandelate_racemase Man 20.0 5.6E+02 0.012 23.1 7.9 68 87-155 226-295 (355)
237 PF08418 Pol_alpha_B_N: DNA po 20.0 1.1E+02 0.0024 26.2 3.1 26 202-227 9-34 (253)
238 PRK13561 putative diguanylate 20.0 6.1E+02 0.013 24.9 8.7 102 51-155 501-611 (651)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=3e-54 Score=383.61 Aligned_cols=256 Identities=23% Similarity=0.431 Sum_probs=215.6
Q ss_pred CCEeeCCC----CchHHHHHHHHhhhhcCCCCceeeeeeeccccC---CCC-CCCCHHHHHHHHHHHHHhhCCCcccEEE
Q 022889 1 MGSFDFVD----GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWV---PPP-VKMTSSIVRESIDVSRRRMDVPCLDMLQ 72 (290)
Q Consensus 1 In~~DTA~----g~sE~~lG~~l~~~~r~~~~~~~~~~~~~~k~~---~~~-~~~~~~~i~~~~e~SL~~L~~d~iDl~~ 72 (290)
|||||||+ |.||++||+||+..++ |+ .+++.+|+..... +.. .++++++|+++++.||+|||||||||||
T Consensus 47 in~~DTA~~Yg~g~sE~ilG~~l~~~~~-Rd-~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~ 124 (316)
T COG0667 47 INFFDTADVYGDGRSEEILGEALKERGR-RD-KVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQ 124 (316)
T ss_pred CCEEECccccCCCchHHHHHHHHhccCC-CC-eEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEE
Confidence 89999999 5899999999998663 33 3344444333322 222 5689999999999999999999999999
Q ss_pred eecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecccccccCCCcchHHHHHHHHhCCcee
Q 022889 73 FHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLI 152 (290)
Q Consensus 73 lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi 152 (290)
+|+||...+ .+|++.+|.+|+++|||++||+||++.+++..+.+...+++++|.+||+++|..+.+++++|+++||+++
T Consensus 125 iH~~d~~~p-~~e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~ 203 (316)
T COG0667 125 LHRPDPETP-IEETLEALDELVREGKIRYIGVSNYSAEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLL 203 (316)
T ss_pred eCCCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEE
Confidence 999999887 8999999999999999999999999999999998843589999999999998878789999999999999
Q ss_pred eecccccccccccccCCCCCCCCCCCCCCCchhhHhhhhhhcc--CCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHhhC
Q 022889 153 TYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAW--GGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQ 230 (290)
Q Consensus 153 a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~ 230 (290)
+||||++|+|++++... +. +.+... ..++ ...+...++...++++|+++|+||+|+||+|++++
T Consensus 204 ~~spla~G~Ltgk~~~~----~~-~~r~~~---------~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~ 269 (316)
T COG0667 204 AYSPLASGLLTGKYLPG----PE-GSRASE---------LPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQ 269 (316)
T ss_pred EecCccccccCCCcCCC----cc-hhhccc---------cccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 99999999999998753 11 111000 0011 12245677789999999999999999999999999
Q ss_pred CCceeeeecccCCcHHHHHHhhhhhcCCCCHHHHHHHHHHHhhCC
Q 022889 231 PAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 275 (290)
Q Consensus 231 ~~v~~~l~g~~~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~~~~ 275 (290)
|.++++|+|+++ ++||++|+++++..|++++++.|++......
T Consensus 270 ~~v~~~I~Ga~~--~~qL~en~~A~~~~L~~~~~~~l~~~~~~~~ 312 (316)
T COG0667 270 PGVTSPIVGASK--AEQLEENLAALDIKLSEEELAALDEISAEEP 312 (316)
T ss_pred CCCceEeecCCC--HHHHHHHHHHhcCCCCHHHHHHHHHHhhhcc
Confidence 999999999999 9999999999999999999999998887543
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=6e-54 Score=374.93 Aligned_cols=266 Identities=24% Similarity=0.397 Sum_probs=225.5
Q ss_pred CCEeeCCC----CchHHHHHHHHhhhhcCCCCceeeeeeeccccCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeecC
Q 022889 1 MGSFDFVD----GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWW 76 (290)
Q Consensus 1 In~~DTA~----g~sE~~lG~~l~~~~r~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~ 76 (290)
|||||||+ |.||+++|+++++++..|.++++.++++.....+.+.+.+...+...++.||+|||+|||||||+||+
T Consensus 58 in~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~ 137 (336)
T KOG1575|consen 58 INFFDTAEVYGNGQSEELLGEFIKSRGWRRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRW 137 (336)
T ss_pred CCEEehhhhcCCcccHHHHHHHHHhcCCcCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEccc
Confidence 79999999 69999999999986555554555555555554343567889999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcC-CCeeEecccccccCCCc-chHHHHHHHHhCCceeee
Q 022889 77 DYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG-IPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITY 154 (290)
Q Consensus 77 ~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~via~ 154 (290)
|+.++ +++++++|.+++++|||+|||+|+++.+++.++.... +++.++|++||++.|.. +.++++.|++.||++++|
T Consensus 138 D~~~p-iee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~y 216 (336)
T KOG1575|consen 138 DPMVP-IEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAW 216 (336)
T ss_pred CCCCC-HHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEe
Confidence 99998 9999999999999999999999999999999998853 67999999999999984 556999999999999999
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCchhhHhhhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCce
Q 022889 155 GTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVA 234 (290)
Q Consensus 155 spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~ 234 (290)
|||++|+|+|+|... .+.+....++... ....++...+.+..+++.+.++|+++|+|++|+||+|+++++.++
T Consensus 217 sPL~~G~Ltgk~~~~-e~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~ 289 (336)
T KOG1575|consen 217 SPLGRGLLTGKYKLG-EDSRNGDKRFQFL------GLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVS 289 (336)
T ss_pred cccccceeccCcccc-ccccccccccccc------ccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCE
Confidence 999999999998864 2333333222211 111122111456788899999999999999999999999999999
Q ss_pred eeeecccCCcHHHHHHhhhhhcCCCCHHHHHHHHHHHhhCCC
Q 022889 235 GSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGKD 276 (290)
Q Consensus 235 ~~l~g~~~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~~~~~ 276 (290)
++|||+++ .+||+||++|+...|+++++..|+++......
T Consensus 290 ~pIpG~s~--ve~l~eni~Al~~~Lt~e~~~~l~~~~~~~~~ 329 (336)
T KOG1575|consen 290 SPIPGASK--IEQLKENIGALSVKLTPEEIKELEEIIDKILG 329 (336)
T ss_pred EecCCCCc--HHHHHHHHhhhhccCCHHHHHHHHHhhccccC
Confidence 99999999 99999999999999999999999999987664
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.2e-50 Score=347.94 Aligned_cols=220 Identities=22% Similarity=0.315 Sum_probs=190.5
Q ss_pred CCEeeCCC-CchHHHHHHHHhhh--hcCCCCceeeeeeeccccCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeecCC
Q 022889 1 MGSFDFVD-GPAEDLYGIFINRV--RRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWD 77 (290)
Q Consensus 1 In~~DTA~-g~sE~~lG~~l~~~--~r~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~ 77 (290)
+|+||||. +.+|+.+|+++++. +|+ ..++.||.|+. ..+.+.+.+++++||+|||+||||||+||||.
T Consensus 42 yr~IDTA~~YgnE~~VG~aI~~s~v~Re-------elFittKvw~~--~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~ 112 (280)
T COG0656 42 YRLIDTAEIYGNEEEVGEAIKESGVPRE-------ELFITTKVWPS--DLGYDETLKALEASLKRLGLDYVDLYLIHWPV 112 (280)
T ss_pred cceEecHhHhcCHHHHHHHHHhcCCCHH-------HeEEEeecCCc--cCCcchHHHHHHHHHHHhCCCceeEEEECCCC
Confidence 58999999 55999999999984 444 44566666665 34678899999999999999999999999997
Q ss_pred CC-CccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc-CCCeeEecccccccCCCcchHHHHHHHHhCCceeeec
Q 022889 78 YS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 78 ~~-~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 155 (290)
+. ...+.|+|++|++++++||||+||||||+...++++++. ++.|+++|++||++.+.. +++++|+++||.++|||
T Consensus 113 ~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~Ays 190 (280)
T COG0656 113 PNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYS 190 (280)
T ss_pred CccCccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEEC
Confidence 53 121689999999999999999999999999999999984 578999999999987775 49999999999999999
Q ss_pred cccccc-ccccccCCCCCCCCCCCCCCCchhhHhhhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCce
Q 022889 156 TVMGGL-LSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVA 234 (290)
Q Consensus 156 pl~~G~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~ 234 (290)
||++|. |... +.+.+||++||.|++|++|+|+++++ .
T Consensus 191 PL~~g~~l~~~----------------------------------------~~l~~Ia~k~g~t~AQv~L~W~i~~g--v 228 (280)
T COG0656 191 PLAKGGKLLDN----------------------------------------PVLAEIAKKYGKTPAQVALRWHIQRG--V 228 (280)
T ss_pred CcccccccccC----------------------------------------hHHHHHHHHhCCCHHHHHHHHHHhCC--c
Confidence 999653 2210 79999999999999999999999998 4
Q ss_pred eeeecccCCcHHHHHHhhhhhcCCCCHHHHHHHHHHHhhCC
Q 022889 235 GSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 275 (290)
Q Consensus 235 ~~l~g~~~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~~~~ 275 (290)
.+||.+++ ++|+++|++++++.||+|||+.|+++.....
T Consensus 229 ~~Ipks~~--~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~ 267 (280)
T COG0656 229 IVIPKSTT--PERIRENLAAFDFELSEEDMAAIDALDRGYG 267 (280)
T ss_pred EEecCCCC--HHHHHHHHhhhcCCCCHHHHHHHHhhccccC
Confidence 46777766 9999999999999999999999999998653
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=2.9e-49 Score=353.88 Aligned_cols=258 Identities=19% Similarity=0.289 Sum_probs=202.3
Q ss_pred CCEeeCCC----CchHHHHHHHHhhh--hcCCCCceeeeeeeccccCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEee
Q 022889 1 MGSFDFVD----GPAEDLYGIFINRV--RRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFH 74 (290)
Q Consensus 1 In~~DTA~----g~sE~~lG~~l~~~--~r~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH 74 (290)
||+||||+ |.||++||+||+.. +|++. ++.+|+..... .+...+++++.+++++++||+||||||||+|++|
T Consensus 43 i~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~-~iaTK~~~~~~-~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH 120 (317)
T TIGR01293 43 INLFDTAEVYAAGKAEVVLGNILKKKGWRRSSY-VITTKIFWGGK-AETERGLSRKHIIEGLKASLERLQLEYVDIVFAN 120 (317)
T ss_pred CCeEECccccCCCccHHHHHHHHHhcCCCcccE-EEEeeeccCCC-CCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEec
Confidence 79999999 57999999999853 35432 33333211111 1112356899999999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHH----cC-CCeeEecccccccCCCc-chHHHHHHHHhC
Q 022889 75 WWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NG-IPVVSNQVQHSVVDMRP-QQKMAELCQLTG 148 (290)
Q Consensus 75 ~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~----~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~g 148 (290)
||+...+ +++++++|++|+++||||+||+|||+.+++..+.. .+ ++++++|++||++++.. +.+++++|+++|
T Consensus 121 ~~~~~~~-~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~g 199 (317)
T TIGR01293 121 RPDPNTP-MEETVRAMTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIG 199 (317)
T ss_pred cCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcC
Confidence 9998766 89999999999999999999999999998877653 22 57899999999999874 668999999999
Q ss_pred CceeeecccccccccccccCCCCCCCCCCCCCCCchhhHhhhhhhcc--CCchhHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 022889 149 VKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAW--GGWSQFQVLLQTLKRIASKHGVSIPVVAVRY 226 (290)
Q Consensus 149 i~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~la~~~~~s~~q~al~~ 226 (290)
|++++|+||++|+|++++... .|.+. +..... +.++...+ ..........+.++++|+++|+|++|+||+|
T Consensus 200 i~v~a~spl~~G~Ltg~~~~~---~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w 272 (317)
T TIGR01293 200 VGAMTWSPLACGLVSGKYDSG---IPPYS-RATLKG---YQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAW 272 (317)
T ss_pred CeEEEeccccccccCCCCCCC---CCCcc-cccccc---cchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 999999999999999987542 12111 100000 00000000 0011234556789999999999999999999
Q ss_pred HhhCCCceeeeecccCCcHHHHHHhhhhhcC--CCCHHHHHHHHHH
Q 022889 227 ILDQPAVAGSMIGVRLGLAEHIQDTNAIFML--SLDEDDVNSIQEV 270 (290)
Q Consensus 227 ~l~~~~v~~~l~g~~~~~~~~l~enl~a~~~--~L~~e~~~~l~~~ 270 (290)
++++|.++++|+|+++ ++||++|+++++. +||+++++.|+++
T Consensus 273 ~l~~~~v~~~i~G~~~--~~ql~en~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 273 CLRNEGVSSVLLGASS--AEQLMENLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred HhcCCCCeEEEeCCCC--HHHHHHHHHHhhccCCCCHHHHHHHHhh
Confidence 9999999999999999 9999999999987 9999999999875
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=3.2e-49 Score=357.18 Aligned_cols=263 Identities=21% Similarity=0.359 Sum_probs=204.8
Q ss_pred CCEeeCCC--C----chHHHHHHHHhhh---hcCCCCceeeeeeeccccC-CCCCCCCHHHHHHHHHHHHHhhCCCcccE
Q 022889 1 MGSFDFVD--G----PAEDLYGIFINRV---RRERPPEFLDKVRGLTKWV-PPPVKMTSSIVRESIDVSRRRMDVPCLDM 70 (290)
Q Consensus 1 In~~DTA~--g----~sE~~lG~~l~~~---~r~~~~~~~~~~~~~~k~~-~~~~~~~~~~i~~~~e~SL~~L~~d~iDl 70 (290)
||+||||+ | .||++||++|++. +|++. +|.+|. +.+.+. +.+...+++.|++++++||+||||||||+
T Consensus 57 in~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~Rd~~-~I~TK~-g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl 134 (346)
T PRK09912 57 ITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDEL-IISTKA-GYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDI 134 (346)
T ss_pred CCEEEChhhhCCCCCCcHHHHHHHHHhcccCCCCeE-EEEEEe-cccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEE
Confidence 79999999 5 4999999999863 34432 233332 221111 11224679999999999999999999999
Q ss_pred EEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHH----cCCCeeEecccccccCCCcc-hHHHHHHH
Q 022889 71 LQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGIPVVSNQVQHSVVDMRPQ-QKMAELCQ 145 (290)
Q Consensus 71 ~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~----~~~~~~~~q~~~n~~~~~~~-~~~~~~~~ 145 (290)
|++|+|+...+ +++++++|++|+++|||++||||||+.++++++.+ .++++.++|++||++++..+ .+++++|+
T Consensus 135 ~~lH~~~~~~~-~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~ 213 (346)
T PRK09912 135 FYSHRVDENTP-MEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQ 213 (346)
T ss_pred EEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHH
Confidence 99999988766 89999999999999999999999999998876554 25678999999999998654 47999999
Q ss_pred HhCCceeeecccccccccccccCCCCCCCCCCCCCCCchhhHhhhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHH
Q 022889 146 LTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVR 225 (290)
Q Consensus 146 ~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~ 225 (290)
++||++++|+||++|+|++++.... |. +.+..... ...+.+...+. .+......+.+.++|+++|+|++|+||+
T Consensus 214 ~~gI~via~spl~~G~Lt~~~~~~~---~~-~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~l~~~a~~~g~t~aq~AL~ 287 (346)
T PRK09912 214 NNGVGCIAFTPLAQGLLTGKYLNGI---PQ-DSRMHREG-NKVRGLTPKML-TEANLNSLRLLNEMAQQRGQSMAQMALS 287 (346)
T ss_pred HcCceEEEehhhcCccccCCCCCCC---CC-Cccccccc-cchhhhchhhc-cHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999999999875421 11 11110000 00000000000 1223455688999999999999999999
Q ss_pred HHhhCCCceeeeecccCCcHHHHHHhhhhh-cCCCCHHHHHHHHHHHhhC
Q 022889 226 YILDQPAVAGSMIGVRLGLAEHIQDTNAIF-MLSLDEDDVNSIQEVTKKG 274 (290)
Q Consensus 226 ~~l~~~~v~~~l~g~~~~~~~~l~enl~a~-~~~L~~e~~~~l~~~~~~~ 274 (290)
|++++|.++++|||+++ ++||++|++++ .++|++++++.|++++.+.
T Consensus 288 w~l~~~~v~~~i~G~~~--~~ql~en~~a~~~~~L~~e~~~~l~~~~~~~ 335 (346)
T PRK09912 288 WLLKDERVTSVLIGASR--AEQLEENVQALNNLTFSTEELAQIDQHIADG 335 (346)
T ss_pred HHHhCCCCeEEEeCCCC--HHHHHHHHhhhcCCCCCHHHHHHHHHhhCcc
Confidence 99999999999999999 99999999998 4799999999999998663
No 6
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=2.4e-48 Score=342.90 Aligned_cols=245 Identities=29% Similarity=0.491 Sum_probs=198.8
Q ss_pred CCEeeCCC----CchHHHHHHHHhh--hhcCCCCceeeeeeeccccCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEee
Q 022889 1 MGSFDFVD----GPAEDLYGIFINR--VRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFH 74 (290)
Q Consensus 1 In~~DTA~----g~sE~~lG~~l~~--~~r~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH 74 (290)
||+||||+ |.||++||++|++ .+|++. ++.+|+ .........++++.+++++++||++||+||||+|++|
T Consensus 31 in~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~-~i~tK~---~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH 106 (283)
T PF00248_consen 31 INFFDTADSYGNGRSERILGRALRKSRVPRDDI-FISTKV---YGDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLH 106 (283)
T ss_dssp --EEEECGGGGGGTHHHHHHHHHHHTSSTGGGS-EEEEEE---ESSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEES
T ss_pred CCeeccccccccccccccccccccccccccccc-cccccc---cccccccccccccccccccccccccccccchhccccc
Confidence 79999999 7999999999998 456654 444444 1111233467999999999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc-CCCeeEecccccccCCCcchHHHHHHHHhCCceee
Q 022889 75 WWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 75 ~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
+|+.......++|++|++|+++|+||+||||||+.+.++.+... .++|+++|++||++++....+++++|+++||++++
T Consensus 107 ~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a 186 (283)
T PF00248_consen 107 WPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIA 186 (283)
T ss_dssp SSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEE
T ss_pred cccccccccchhhhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99987665799999999999999999999999999999999553 46899999999999778888999999999999999
Q ss_pred ecccccccccccccCCCCCCCCCCCCCCCchhhHhhhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCc
Q 022889 154 YGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAV 233 (290)
Q Consensus 154 ~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v 233 (290)
|+|+++|+|++++.......+.... .......+.+.++++++|+|++|+||+|++++|.+
T Consensus 187 ~~~l~~G~l~~~~~~~~~~~~~~~~--------------------~~~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~ 246 (283)
T PF00248_consen 187 YSPLAGGLLTGKYKSPPPPPSRASL--------------------RDAQELADALRELAEEHGVSPAQLALRWVLSHPGV 246 (283)
T ss_dssp ESTTGGGCGGTTTTTTTTSTTTSGS--------------------STHGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTT
T ss_pred ccccccCccccccccCCCccccccc--------------------chhhhhhhhhhhhhhhcccccchhhhhhhhhcccc
Confidence 9999999999987654321111100 00223348999999999999999999999999999
Q ss_pred eeeeecccCCcHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 022889 234 AGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVT 271 (290)
Q Consensus 234 ~~~l~g~~~~~~~~l~enl~a~~~~L~~e~~~~l~~~~ 271 (290)
+++|+|+++ ++|+++|+++++.+||+++++.|+++.
T Consensus 247 ~~~i~g~~~--~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 247 ASVIVGASS--PEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp EEEEEB-SS--HHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred ccccCCCCC--HHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 999999999 999999999998999999999999875
No 7
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=2.4e-47 Score=345.35 Aligned_cols=260 Identities=23% Similarity=0.373 Sum_probs=202.9
Q ss_pred CCEeeCCC--C---------chHHHHHHHHhhh-hcCCCCceeeeeeeccccC----CCCCCCCHHHHHHHHHHHHHhhC
Q 022889 1 MGSFDFVD--G---------PAEDLYGIFINRV-RRERPPEFLDKVRGLTKWV----PPPVKMTSSIVRESIDVSRRRMD 64 (290)
Q Consensus 1 In~~DTA~--g---------~sE~~lG~~l~~~-~r~~~~~~~~~~~~~~k~~----~~~~~~~~~~i~~~~e~SL~~L~ 64 (290)
||+||||+ | .||++||++|+.. +|++. ++.+|+....... .....++++.+++++++||+|||
T Consensus 44 i~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~~~R~~v-~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~ 122 (346)
T PRK10625 44 INLIDVAEMYPVPPRPETQGLTETYIGNWLAKRGSREKL-IIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQ 122 (346)
T ss_pred CCEEECccccCCCcCCCCCCchHHHHHHHHhhcCCcceE-EEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 79999999 4 3999999999853 34433 3333332211100 01125689999999999999999
Q ss_pred CCcccEEEeecCCCC----------------CccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHH----cCC-Cee
Q 022889 65 VPCLDMLQFHWWDYS----------------NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGI-PVV 123 (290)
Q Consensus 65 ~d~iDl~~lH~~~~~----------------~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~----~~~-~~~ 123 (290)
|||||||++|||+.. ...+.++|++|++|+++|||++||+|||+.+.+..++. .+. .+.
T Consensus 123 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~ 202 (346)
T PRK10625 123 TDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIV 202 (346)
T ss_pred CCeEeEEEeeccCcccccccccccccccccCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcE
Confidence 999999999999752 11278999999999999999999999999998877653 233 588
Q ss_pred EecccccccCCCcchHHHHHHHHhCCceeeecccccccccccccCCCCCCCCCCCCCCCchhhHhhhhhhccCCchhHHH
Q 022889 124 SNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQV 203 (290)
Q Consensus 124 ~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
++|++||++++..+.+++++|+++||++++|+||++|+|++++.... .|.+ .+... ...+. .+ .......
T Consensus 203 ~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~G~Ltg~~~~~~--~~~~-~~~~~--~~~~~----~~-~~~~~~~ 272 (346)
T PRK10625 203 TIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAFGTLTGKYLNGA--KPAG-ARNTL--FSRFT----RY-SGEQTQK 272 (346)
T ss_pred EecCCCCcccccchhHHHHHHHHcCCeEEEeccccCeeccCCCCCCC--CCCC-ccccc--ccccc----cc-cchhHHH
Confidence 99999999998877789999999999999999999999999875321 1111 11000 00010 00 1123455
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhhCCCceeeeecccCCcHHHHHHhhhhhcCCCCHHHHHHHHHHHhh
Q 022889 204 LLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKK 273 (290)
Q Consensus 204 ~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~~l~g~~~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~~ 273 (290)
..+.++++|+++|+|++|+||+|++++|.|+++|+|+++ ++||++|+++++++|++++++.|+++...
T Consensus 273 ~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~--~~~l~en~~a~~~~L~~~~~~~l~~~~~~ 340 (346)
T PRK10625 273 AVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATT--MEQLKTNIESLHLTLSEEVLAEIEAVHQV 340 (346)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCC--HHHHHHHHhhccCCCCHHHHHHHHHHHhh
Confidence 678999999999999999999999999999999999999 99999999999999999999999999864
No 8
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=3.3e-47 Score=332.58 Aligned_cols=219 Identities=17% Similarity=0.263 Sum_probs=186.8
Q ss_pred CCEeeCCC-CchHHHHHHHHhhh--hcCCCCceeeeeeeccccCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeecCC
Q 022889 1 MGSFDFVD-GPAEDLYGIFINRV--RRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWD 77 (290)
Q Consensus 1 In~~DTA~-g~sE~~lG~~l~~~--~r~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~ 77 (290)
||+||||+ +.+|+.+|++|++. +|++. ++.+| + ++. .++++.+++++++||+|||+||||+|++|+|+
T Consensus 30 i~~~DTA~~Yg~E~~lG~al~~~~~~R~~v-~i~TK--~----~~~--~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~ 100 (267)
T PRK11172 30 YRAIDTAQIYDNEAAVGQAIAESGVPRDEL-FITTK--I----WID--NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPS 100 (267)
T ss_pred CCEEEccchhCCHHHHHHHHHHcCCChhHe-EEEEE--e----CCC--CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCC
Confidence 79999999 44799999999853 34432 22222 2 222 35789999999999999999999999999997
Q ss_pred CC--CccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc-CC-CeeEecccccccCCCcchHHHHHHHHhCCceee
Q 022889 78 YS--NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GI-PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 78 ~~--~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~-~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
+. .+ ..++|++|++|+++||||+||+|||+.++++++++. +. +++++|++||++++. .+++++|+++||++++
T Consensus 101 ~~~~~~-~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a 177 (267)
T PRK11172 101 PNDEVS-VEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTS 177 (267)
T ss_pred CCCCCC-HHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEE
Confidence 63 33 789999999999999999999999999999988763 33 689999999998764 5899999999999999
Q ss_pred ecccccccccccccCCCCCCCCCCCCCCCchhhHhhhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCc
Q 022889 154 YGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAV 233 (290)
Q Consensus 154 ~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v 233 (290)
|+||++|.+... +.+.++|+++|+|++|+||+|+++++.
T Consensus 178 ~spl~~G~~~~~----------------------------------------~~l~~~a~~~~~s~aqval~w~l~~~~- 216 (267)
T PRK11172 178 YMTLAYGKVLKD----------------------------------------PVIARIAAKHNATPAQVILAWAMQLGY- 216 (267)
T ss_pred ECCCCCCcccCC----------------------------------------HHHHHHHHHhCCCHHHHHHHHHHhCCC-
Confidence 999999864320 568899999999999999999999973
Q ss_pred eeeeecccCCcHHHHHHhhhhhcCCCCHHHHHHHHHHHhhCC
Q 022889 234 AGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 275 (290)
Q Consensus 234 ~~~l~g~~~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~~~~ 275 (290)
++|+|+++ ++|+++|+++++++||+++++.|+++....+
T Consensus 217 -~~i~g~~~--~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~~ 255 (267)
T PRK11172 217 -SVIPSSTK--RENLASNLLAQDLQLDAEDMAAIAALDRNGR 255 (267)
T ss_pred -EeecCCCC--HHHHHHHHhhcCCCcCHHHHHHHhhhccCCc
Confidence 58999999 9999999999999999999999999986654
No 9
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=3.9e-46 Score=333.34 Aligned_cols=245 Identities=18% Similarity=0.286 Sum_probs=194.8
Q ss_pred CCEeeCCC----CchHHHHHHHHhhhhcCCCCceeeeeeeccccCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeecC
Q 022889 1 MGSFDFVD----GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWW 76 (290)
Q Consensus 1 In~~DTA~----g~sE~~lG~~l~~~~r~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~ 76 (290)
||+||||+ |.||+.+|++|++.+..|. .+++.+++... +.+..++++.+++++++||+||||||||+|+||+|
T Consensus 45 in~~DTA~~Yg~g~sE~~lG~al~~~~~~R~-~v~I~TK~~~~--~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~ 121 (314)
T PLN02587 45 INFFDTSPYYGGTLSEKVLGKALKALGIPRE-KYVVSTKCGRY--GEGFDFSAERVTKSVDESLARLQLDYVDILHCHDI 121 (314)
T ss_pred CCEEECcCccCCCchHHHHHHHHHhCCCCcc-eEEEEeccccC--CCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCC
Confidence 79999999 5699999999987432233 23333332211 12235789999999999999999999999999999
Q ss_pred CCCCc--cHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc---C-CCeeEecccccccCCCcchHHHHHHHHhCCc
Q 022889 77 DYSNP--GYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN---G-IPVVSNQVQHSVVDMRPQQKMAELCQLTGVK 150 (290)
Q Consensus 77 ~~~~~--~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 150 (290)
+.... .+.+++++|++|+++||||+||+|||+.+++..+.+. + +.+..+|+.||++++.. .+++++|+++||+
T Consensus 122 ~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~ 200 (314)
T PLN02587 122 EFGSLDQIVNETIPALQKLKESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVG 200 (314)
T ss_pred CCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCce
Confidence 75321 2578999999999999999999999999888776652 1 34556789999987643 4899999999999
Q ss_pred eeeecccccccccccccCCCCCCCCCCCCCCCchhhHhhhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHhhC
Q 022889 151 LITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQ 230 (290)
Q Consensus 151 via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~ 230 (290)
+++|+||++|+|+++.... + .+ ..+......+.++++|+++|+|++|+||+|++++
T Consensus 201 v~a~spl~~G~L~~~~~~~----------~-~~-------------~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~ 256 (314)
T PLN02587 201 VISASPLAMGLLTENGPPE----------W-HP-------------APPELKSACAAAATHCKEKGKNISKLALQYSLSN 256 (314)
T ss_pred EEEechhhccccCCCCCCC----------C-CC-------------CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 9999999999999863110 0 00 0123345567899999999999999999999999
Q ss_pred CCceeeeecccCCcHHHHHHhhhhhcC----CCCHHHHHHHHHHHhhCC
Q 022889 231 PAVAGSMIGVRLGLAEHIQDTNAIFML----SLDEDDVNSIQEVTKKGK 275 (290)
Q Consensus 231 ~~v~~~l~g~~~~~~~~l~enl~a~~~----~L~~e~~~~l~~~~~~~~ 275 (290)
|.|+++|+|+++ ++||++|++++.. +|+++++++|+++.....
T Consensus 257 ~~v~~~i~G~~~--~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~~~~ 303 (314)
T PLN02587 257 KDISTTLVGMNS--VQQVEENVAAATELETSGIDEELLSEVEAILAPVK 303 (314)
T ss_pred CCCeeEEecCCC--HHHHHHHHHHHhhcccCCCCHHHHHHHHHhhcccc
Confidence 999999999999 9999999999763 799999999999986433
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=2.8e-45 Score=323.71 Aligned_cols=236 Identities=29% Similarity=0.527 Sum_probs=198.9
Q ss_pred CCEeeCCC----CchHHHHHHHHhhhh-cCCCCceeeeeeeccccCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeec
Q 022889 1 MGSFDFVD----GPAEDLYGIFINRVR-RERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHW 75 (290)
Q Consensus 1 In~~DTA~----g~sE~~lG~~l~~~~-r~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~ 75 (290)
||+||||+ |.||+.+|++|+..+ |++. ++.+|. .... ...++++++.+++++++||++||+||||+|+||+
T Consensus 43 i~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~-~i~tK~--~~~~-~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~ 118 (285)
T cd06660 43 INFIDTADVYGDGESEELLGEALKERGPREEV-FIATKV--GPRP-GDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHW 118 (285)
T ss_pred CCeEECccccCCCCCHHHHHHHHhccCCcCcE-EEEeee--cCCC-CCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecC
Confidence 79999999 459999999999865 5533 232322 2111 1113578999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc-CCCeeEecccccccCCCcchHHHHHHHHhCCceeee
Q 022889 76 WDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 154 (290)
Q Consensus 76 ~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 154 (290)
|+.......++|++|++++++|+|++||+|||+.+.+.++++. ..+|+++|++||++++..+.+++++|+++||++++|
T Consensus 119 ~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~ 198 (285)
T cd06660 119 PDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAY 198 (285)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEe
Confidence 9876554799999999999999999999999999999999874 368999999999999887668999999999999999
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCchhhHhhhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCce
Q 022889 155 GTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVA 234 (290)
Q Consensus 155 spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~ 234 (290)
+||++|.|+++..... .... ......+..++.+++.+++|+||+|++++|.++
T Consensus 199 ~~l~~g~l~~~~~~~~--------~~~~-------------------~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~ 251 (285)
T cd06660 199 SPLAGGLLTGKYLPGA--------PPPE-------------------GDLLEALKEIAEKHGVTPAQVALRWLLQQPGVT 251 (285)
T ss_pred ccccCceecCCCCCCC--------CCCh-------------------hhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCe
Confidence 9999999987643211 0000 002378999999999999999999999999999
Q ss_pred eeeecccCCcHHHHHHhhhhhcCCCCHHHHHHHHH
Q 022889 235 GSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQE 269 (290)
Q Consensus 235 ~~l~g~~~~~~~~l~enl~a~~~~L~~e~~~~l~~ 269 (290)
++|+|+++ ++||++|+++..++|++++++.|++
T Consensus 252 ~~i~g~~~--~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 252 SVIPGASS--PERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred EEEeCCCC--HHHHHHHHhhccCCCCHHHHHHHhh
Confidence 99999999 9999999999989999999999975
No 11
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=3.6e-45 Score=322.99 Aligned_cols=230 Identities=17% Similarity=0.150 Sum_probs=185.6
Q ss_pred CCEeeCCC--CchHHHHHHHHhhhhcCCCCceeeeeeeccccCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeecCCC
Q 022889 1 MGSFDFVD--GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY 78 (290)
Q Consensus 1 In~~DTA~--g~sE~~lG~~l~~~~r~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~ 78 (290)
|||||||+ |.||+.+|++|++.++ . .+++++ |. + ..+++.+++++++||+||||||||+|++|+|+.
T Consensus 46 in~~DTA~~YG~SE~~lG~al~~~~~--~-~~~i~t----k~-~---~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~ 114 (292)
T PRK14863 46 LSVLDASGLFGRAETVLGQLIPRPVP--F-RVTLST----VR-A---DRGPDFVEAEARASLRRMGVERADAILVHSPTE 114 (292)
T ss_pred CCEEecchhhhhHHHHHhhhhccCCc--e-Eeeccc----cc-c---cccHHHHHHHHHHHHHHhCCCccCeEEEeCchh
Confidence 79999999 9999999999974211 1 222222 21 1 246899999999999999999999999999975
Q ss_pred C-CccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecccccccCCCcc-hHHHHHHHHhCCceeeecc
Q 022889 79 S-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 79 ~-~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~via~sp 156 (290)
. .+...+++++|++|+++||||+||+|||+.+++..+.. ..+|+++|++||++++..+ .+++++|+++||++++|+|
T Consensus 115 ~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~-~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~sp 193 (292)
T PRK14863 115 LFGPHGAALWERLQALKDQGLFAKIGVSAHASDDPVGVAR-RFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSI 193 (292)
T ss_pred hcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHHHHHHh-cCCCCEEEecCCcccccccccchHHHHHhCCCEEEEech
Confidence 3 23136889999999999999999999999998887765 4589999999999998754 4699999999999999999
Q ss_pred cccccccccccCCCCCCCCCCCCCCCchhhHhhhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCceee
Q 022889 157 VMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGS 236 (290)
Q Consensus 157 l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~~ 236 (290)
|++|+|++.... .+ .. + ......+..+.+++.++++|++|+||+|++++|.|+++
T Consensus 194 l~~G~L~~~~~~----~~---~~--------~----------~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~ 248 (292)
T PRK14863 194 FLNGLLFLPPDR----VP---AQ--------L----------KGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAV 248 (292)
T ss_pred hhCccccCCccc----Cc---cc--------h----------hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeE
Confidence 999999752100 00 00 0 01112346677788888999999999999999999999
Q ss_pred eecccCCcHHHHHHhhhhhcCCCCHHHHHHHHH
Q 022889 237 MIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQE 269 (290)
Q Consensus 237 l~g~~~~~~~~l~enl~a~~~~L~~e~~~~l~~ 269 (290)
|+|+++ ++|+++|+++.+.+++++.+.+|..
T Consensus 249 I~G~~~--~~ql~~n~~a~~~~~~~~~~~~l~~ 279 (292)
T PRK14863 249 LVGVNS--AAELSAVVAAASSPPPDLDWDDMAI 279 (292)
T ss_pred EEecCC--HHHHHHHHHHHhcCCCccchhhccC
Confidence 999999 9999999999998999988777653
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.4e-44 Score=318.17 Aligned_cols=226 Identities=14% Similarity=0.187 Sum_probs=185.3
Q ss_pred CCEeeCCC----CchHHHHHHHHhhhhcCCCCceeeeeeecccc-CCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeec
Q 022889 1 MGSFDFVD----GPAEDLYGIFINRVRRERPPEFLDKVRGLTKW-VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHW 75 (290)
Q Consensus 1 In~~DTA~----g~sE~~lG~~l~~~~r~~~~~~~~~~~~~~k~-~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~ 75 (290)
||+||||+ |.||++||++++. .|++. ++.+|+...... .......+++.+++++++||+||||||||+|++|+
T Consensus 54 in~~DTA~~Yg~~~sE~~lg~~l~~-~R~~~-~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~ 131 (290)
T PRK10376 54 VNHIDTSDFYGPHVTNQLIREALHP-YPDDL-TIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRL 131 (290)
T ss_pred CCeEEChhhcCCCcHHHHHHHHHhc-CCCeE-EEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEec
Confidence 79999999 5699999999965 35533 333332221110 00123568999999999999999999999999988
Q ss_pred CCC----CCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecccccccCCCcchHHHHHHHHhCCce
Q 022889 76 WDY----SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKL 151 (290)
Q Consensus 76 ~~~----~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v 151 (290)
++. ....+.++|++|++|+++||||+||+|||+.+.+.++.+. .+++++|++||++++. ..+++++|+++||++
T Consensus 132 ~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v 209 (290)
T PRK10376 132 MGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKI-AEIVCVQNHYNLAHRA-DDALIDALARDGIAY 209 (290)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhh-CCeEEEecccCCCcCC-hHHHHHHHHHcCCEE
Confidence 521 1122789999999999999999999999999999998874 4789999999999876 357999999999999
Q ss_pred eeecccccccccccccCCCCCCCCCCCCCCCchhhHhhhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCC
Q 022889 152 ITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQP 231 (290)
Q Consensus 152 ia~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~ 231 (290)
++|+||+++... ..+.++++|+++|+|++|+||+|++++|
T Consensus 210 ~a~~pL~g~~~~----------------------------------------~~~~l~~ia~~~~~t~aq~al~w~l~~~ 249 (290)
T PRK10376 210 VPFFPLGGFTPL----------------------------------------QSSTLSDVAASLGATPMQVALAWLLQRS 249 (290)
T ss_pred EEeecCCCCChh----------------------------------------hhHHHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 999999743100 0168899999999999999999999987
Q ss_pred CceeeeecccCCcHHHHHHhhhhhcCCCCHHHHHHHHHHHh
Q 022889 232 AVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTK 272 (290)
Q Consensus 232 ~v~~~l~g~~~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~ 272 (290)
.+.++|+|+++ ++|+++|+++++++|++++++.|+++.+
T Consensus 250 ~~~~~i~G~~~--~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 250 PNILLIPGTSS--VAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred CCeeEeeCCCC--HHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 67789999999 9999999999999999999999998764
No 13
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=3.1e-44 Score=314.87 Aligned_cols=222 Identities=18% Similarity=0.299 Sum_probs=185.4
Q ss_pred CCEeeCCC-CchHHHHHHHHhhhhcCCCCceeeeeeeccccCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCC
Q 022889 1 MGSFDFVD-GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS 79 (290)
Q Consensus 1 In~~DTA~-g~sE~~lG~~l~~~~r~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~ 79 (290)
||+||||+ +.+|+.+|+||+..+..|. .+.+.+++ ++ .+++.+++++++||+|||+||||+|++|+|+..
T Consensus 42 i~~~DTA~~Yg~E~~lG~al~~~~~~R~-~~~i~tK~----~~----~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~ 112 (275)
T PRK11565 42 YRSIDTAAIYKNEEGVGKALKEASVARE-ELFITTKL----WN----DDHKRPREALEESLKKLQLDYVDLYLMHWPVPA 112 (275)
T ss_pred CCEEEchhhhCCHHHHHHHHHHcCCCHH-HEEEEEEe----cC----cchHHHHHHHHHHHHHhCCCceEEEEecCCCCC
Confidence 79999999 4489999999986431222 22223322 22 256899999999999999999999999999875
Q ss_pred CccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHH-cCCCeeEecccccccCCCcchHHHHHHHHhCCceeeecccc
Q 022889 80 NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVM 158 (290)
Q Consensus 80 ~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~-~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~ 158 (290)
...+.++|++|++|+++|+||+||+|||+.+++..++. .++++.++|++||++.+. .+++++|+++||++++|+||+
T Consensus 113 ~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~ 190 (275)
T PRK11565 113 IDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLA 190 (275)
T ss_pred cCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCC
Confidence 44478999999999999999999999999999998875 456789999999998764 589999999999999999998
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhHhhhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCceeeee
Q 022889 159 GGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMI 238 (290)
Q Consensus 159 ~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~~l~ 238 (290)
+|.. + .+. .+.+.++|+++|+|++|+||+|+++++. ++|+
T Consensus 191 ~G~~-~--------------~~~-----------------------~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~ 230 (275)
T PRK11565 191 QGGK-G--------------VFD-----------------------QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIP 230 (275)
T ss_pred CCCc-c--------------ccc-----------------------CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeC
Confidence 7631 0 000 0678999999999999999999999974 4899
Q ss_pred cccCCcHHHHHHhhhhhcCCCCHHHHHHHHHHHhhCC
Q 022889 239 GVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 275 (290)
Q Consensus 239 g~~~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~~~~ 275 (290)
|+++ ++|+++|+++++++|+++++++|+++....+
T Consensus 231 g~~~--~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~ 265 (275)
T PRK11565 231 KSVT--PSRIAENFDVFDFRLDKDELGEIAKLDQGKR 265 (275)
T ss_pred CCCC--HHHHHHHHhccCCCcCHHHHHHHHhhcccCC
Confidence 9999 9999999999999999999999999986554
No 14
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.4e-44 Score=309.18 Aligned_cols=230 Identities=19% Similarity=0.298 Sum_probs=188.6
Q ss_pred CCEeeCCC-CchHHHHHHHHhhhhcCCCCceeeeeeeccccCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCC
Q 022889 1 MGSFDFVD-GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS 79 (290)
Q Consensus 1 In~~DTA~-g~sE~~lG~~l~~~~r~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~ 79 (290)
.|+||||. ..+|+.+|++|++.-.+.. +.....++.||.|+. ...++.++.++++||++||+||+|||++|||-..
T Consensus 42 YRHIDtA~~Y~NE~evG~aik~~i~~~~-v~RediFiTSKlw~~--~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~ 118 (300)
T KOG1577|consen 42 YRHIDTAHVYGNEKEVGEAIKELLAEGG-VKREDIFITSKLWPT--DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAF 118 (300)
T ss_pred cceeechhhhCChHHHHHHHHHHhhhCC-cchhhheeeeccCcc--ccChhhHHHHHHHHHHHhChhhhheeeEeccccc
Confidence 38999999 8899999999996411110 122245666666665 2478999999999999999999999999999543
Q ss_pred ---------------CccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc-CCCeeEecccccccCCCcchHHHHH
Q 022889 80 ---------------NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAEL 143 (290)
Q Consensus 80 ---------------~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~ 143 (290)
..++.++|++|++++++|++|+||||||+..++++++.. .++|.++|+++++. ..+.+++++
T Consensus 119 k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~--~~Q~~L~~f 196 (300)
T KOG1577|consen 119 KDSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPY--LQQKKLVEF 196 (300)
T ss_pred CCCCCcccccccccccchHHHHHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCC--cChHHHHHH
Confidence 123678999999999999999999999999999999984 58899999999995 345689999
Q ss_pred HHHhCCceeeecccccccccccccCCCCCCCCCCCCCCCchhhHhhhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHH
Q 022889 144 CQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVA 223 (290)
Q Consensus 144 ~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~a 223 (290)
|+++||.+.|||||+.+-- ++ ..+.. +.+.+||++||.|++|++
T Consensus 197 Ck~~~I~v~AYSpLg~~~~-~~------------~ll~~-----------------------~~l~~iA~K~~kt~aQIl 240 (300)
T KOG1577|consen 197 CKSKGIVVTAYSPLGSPGR-GS------------DLLED-----------------------PVLKEIAKKYNKTPAQIL 240 (300)
T ss_pred HhhCCcEEEEecCCCCCCC-cc------------ccccC-----------------------HHHHHHHHHhCCCHHHHH
Confidence 9999999999999987631 00 00001 799999999999999999
Q ss_pred HHHHhhCCCceeeeecccCCcHHHHHHhhhhhcCCCCHHHHHHHHHHHhhCC
Q 022889 224 VRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 275 (290)
Q Consensus 224 l~~~l~~~~v~~~l~g~~~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~~~~ 275 (290)
|||.++++.+ |||-+++ ++||.||++.+++.||+||++.|+......+
T Consensus 241 Lrw~~q~g~~--vipKS~~--~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 241 LRWALQRGVS--VIPKSSN--PERIKENFKVFDFELTEEDMKKLDSLNSNER 288 (300)
T ss_pred HHHHHhCCcE--EEeccCC--HHHHHHHHhhccccCCHHHHHHHhhccccce
Confidence 9999998754 5555555 9999999999999999999999998776665
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=3.7e-43 Score=289.85 Aligned_cols=236 Identities=24% Similarity=0.317 Sum_probs=203.4
Q ss_pred CCEeeCCC----CchHHHHHHHHhhhh--cCCCCceeeeeeeccccCC----CCCCCCHHHHHHHHHHHHHhhCCCcccE
Q 022889 1 MGSFDFVD----GPAEDLYGIFINRVR--RERPPEFLDKVRGLTKWVP----PPVKMTSSIVRESIDVSRRRMDVPCLDM 70 (290)
Q Consensus 1 In~~DTA~----g~sE~~lG~~l~~~~--r~~~~~~~~~~~~~~k~~~----~~~~~~~~~i~~~~e~SL~~L~~d~iDl 70 (290)
||+||.|+ |..|.++|.+|+-.| |+.. .+++|+.+...... ..+++|+++|..|+|+||+||+|||+|+
T Consensus 45 itt~DhADIYGgy~cE~~fg~aL~l~p~lReki-eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~ 123 (298)
T COG4989 45 ITTFDHADIYGGYQCEALFGEALKLAPGLREKI-EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDL 123 (298)
T ss_pred cccchhhhhcCCccHHHHHHHHHhcChhhhhhe-EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhh
Confidence 79999999 789999999998665 4444 45555555443221 3578999999999999999999999999
Q ss_pred EEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc-CCCeeEecccccccCCC-cchHHHHHHHHhC
Q 022889 71 LQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMR-PQQKMAELCQLTG 148 (290)
Q Consensus 71 ~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~g 148 (290)
++||+||+-.. -+|+.+||..|++.||+|++|||||++.+++.+.+. ..++.+||++.|+++.. ..++.+++|+++.
T Consensus 124 LLiHRPDpLmd-~eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~ 202 (298)
T COG4989 124 LLIHRPDPLMD-AEEVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLR 202 (298)
T ss_pred hhccCCcccCC-HHHHHHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcC
Confidence 99999999876 799999999999999999999999999999998874 45799999999998753 3568999999999
Q ss_pred CceeeecccccccccccccCCCCCCCCCCCCCCCchhhHhhhhhhccCCchhHHHHHHHHHHHHHHhC-CCHHHHHHHHH
Q 022889 149 VKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHG-VSIPVVAVRYI 227 (290)
Q Consensus 149 i~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~-~s~~q~al~~~ 227 (290)
|.++|||||++|-++.. ...++++.+++..+|.++| .|..++|++|+
T Consensus 203 v~pmaWSpl~gG~~F~g--------------------------------~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWl 250 (298)
T COG4989 203 VRPMAWSPLGGGGLFLG--------------------------------DDKFQRLRKVLDRIAEEYGAVSITAVAIAWL 250 (298)
T ss_pred CCcccccccCCCccccC--------------------------------CcchHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 99999999998854321 0234455689999999999 69999999999
Q ss_pred hhCCCceeeeecccCCcHHHHHHhhhhhcCCCCHHHHHHHHHHHh
Q 022889 228 LDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTK 272 (290)
Q Consensus 228 l~~~~v~~~l~g~~~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~ 272 (290)
+.+|.-..+|+|+.+ +++|++.+++++..||.++|-+|..+..
T Consensus 251 lR~Pa~~~PiiGt~~--~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~ 293 (298)
T COG4989 251 LRHPAKPQPIIGTGN--LERIRAAIKALSLTLTRQQWFEIYTAAI 293 (298)
T ss_pred HhCcCcccceecCCC--HHHHHHHHHHhhccccHHHHHHHHHHhc
Confidence 999999999999988 9999999999999999999999988763
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.5e-38 Score=276.27 Aligned_cols=227 Identities=19% Similarity=0.268 Sum_probs=189.5
Q ss_pred CCEeeCCC----CchHHHHHHHHhhhhcCCCCceeeeeeeccccCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeecC
Q 022889 1 MGSFDFVD----GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWW 76 (290)
Q Consensus 1 In~~DTA~----g~sE~~lG~~l~~~~r~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~ 76 (290)
||+||||. |.||..||+||.+..|+ .+...++.+++ + --+.+.+++-++++|++||+||+|+|+||..
T Consensus 48 iNyidTA~~Yh~g~sE~~lgkaL~~~~Re---kv~LaTKlp~~--~---~~~~edm~r~fneqLekl~~Dy~D~yliH~l 119 (391)
T COG1453 48 INYIDTAWPYHGGESEEFLGKALKDGYRE---KVKLATKLPSW--P---VKDREDMERIFNEQLEKLGTDYIDYYLIHGL 119 (391)
T ss_pred CceEeecccccCCCchHHHHHHhhhcccc---eEEEEeecCCc--c---ccCHHHHHHHHHHHHHHhCCchhhhhhhccc
Confidence 89999999 89999999999987766 33333333331 2 2378999999999999999999999999999
Q ss_pred CCCCcc-H--HHHHHHHHHHHHcCcccEEEccCCC-HHHHHHHHHcCCCeeEecccccccCCCcc--hHHHHHHHHhCCc
Q 022889 77 DYSNPG-Y--LDALNHLTDLKEEGKIKTVALTNFD-TERLRIILENGIPVVSNQVQHSVVDMRPQ--QKMAELCQLTGVK 150 (290)
Q Consensus 77 ~~~~~~-~--~e~~~~l~~l~~~G~ir~iGvs~~~-~~~l~~~~~~~~~~~~~q~~~n~~~~~~~--~~~~~~~~~~gi~ 150 (290)
....-+ + ..+++.+++++++|+||++|+|.|+ .+.+.+++. ..+++++|++||.+++... .+.+.+|.++|++
T Consensus 120 ~~e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~~~~iv~-a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~g 198 (391)
T COG1453 120 NTETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVFKEIVD-AYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLG 198 (391)
T ss_pred cHHHHHHHHccChHHHHHHHHhcCcEEEeeecCCCCHHHHHHHHh-cCCcceEEeeeeeeccchhcccHHHHHHHhCCCc
Confidence 763221 1 2479999999999999999999996 577788887 4689999999999998755 3889999999999
Q ss_pred eeeecccccccccccccCCCCCCCCCCCCCCCchhhHhhhhhhccCCchhHHHHHHHHHHHHHHhC--CCHHHHHHHHHh
Q 022889 151 LITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHG--VSIPVVAVRYIL 228 (290)
Q Consensus 151 via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~--~s~~q~al~~~l 228 (290)
|+.++|+.+|-|..++ | +++.+|++.+. .||+.+|+||++
T Consensus 199 I~IMeP~~gG~l~~~v-------P-------------------------------~~~~~l~~~~~~~~sP~~wa~R~~~ 240 (391)
T COG1453 199 IFIMEPLDGGGLLYNV-------P-------------------------------EKLEELCRPASPKRSPAEWALRYLL 240 (391)
T ss_pred EEEEeeCCCCCcccCC-------C-------------------------------HHHHHHHHhcCCCCCcHHHHHHHHh
Confidence 9999999999776431 1 78889999876 589999999999
Q ss_pred hCCCceeeeecccCCcHHHHHHhhhhhcC--C-CCHHHHHHHHHHHhhCCC
Q 022889 229 DQPAVAGSMIGVRLGLAEHIQDTNAIFML--S-LDEDDVNSIQEVTKKGKD 276 (290)
Q Consensus 229 ~~~~v~~~l~g~~~~~~~~l~enl~a~~~--~-L~~e~~~~l~~~~~~~~~ 276 (290)
+||.|+++++||++ ++|++||++.++. + ||++|++.|.++-+..+.
T Consensus 241 shp~V~~vlsGm~~--~~~l~enLk~~~~~~p~lte~e~~il~~v~~~~~~ 289 (391)
T COG1453 241 SHPEVTTVLSGMNT--PEQLEENLKIASELEPSLTEEELQILEKVEEIYRE 289 (391)
T ss_pred cCCCeEEEecCCCC--HHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999964 3 999999888877765443
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=3.9e-37 Score=256.08 Aligned_cols=260 Identities=20% Similarity=0.255 Sum_probs=203.3
Q ss_pred CCEeeCCC----CchHHHHHHHHhhhhcCCCCceeeeeeeccccCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeecC
Q 022889 1 MGSFDFVD----GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWW 76 (290)
Q Consensus 1 In~~DTA~----g~sE~~lG~~l~~~~r~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~ 76 (290)
||+||||| +.||..+|.++++.||+.+ +|.+|+.-.--.....++++++.+++|+++||+||++||+|++++|..
T Consensus 68 INyiDTsp~Ygqs~se~~lg~al~~vPR~aY-yIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDv 146 (342)
T KOG1576|consen 68 INYIDTSPYYGQSRSEEGLGLALKDVPREAY-YIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDV 146 (342)
T ss_pred ccceecCcccCcchhHHHHHHHHhhCChhhe-eeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecc
Confidence 89999999 7899999999999999976 555555432211123478999999999999999999999999999998
Q ss_pred CCC---CccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcC-CCeeEec--ccccccCCCcchHHHHHHHHhCCc
Q 022889 77 DYS---NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG-IPVVSNQ--VQHSVVDMRPQQKMAELCQLTGVK 150 (290)
Q Consensus 77 ~~~---~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~-~~~~~~q--~~~n~~~~~~~~~~~~~~~~~gi~ 150 (290)
++. ...+.|++.+|+++|++||||+||++.++...+...++.+ -..+++- .+|++.+.. .-..+++.+.+|++
T Consensus 147 efap~ld~vl~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vg 225 (342)
T KOG1576|consen 147 EFAPNLDIVLNETLPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVG 225 (342)
T ss_pred cccccccHHHHHHHHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCce
Confidence 764 1226899999999999999999999999999999998854 2467666 667765432 23667888999999
Q ss_pred eeeecccccccccccccCCCCCCCCCCCCCCCchhhHhhhhhhccCCchhHHHHHHHHHHHHHHhCCCHHHHHHHHHhhC
Q 022889 151 LITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQ 230 (290)
Q Consensus 151 via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~ 230 (290)
|++-++++.|+|+.. +++..+|... ...+...+..+.|++.|+..+.+|+.|.++.
T Consensus 226 Vi~AsalsmgLLt~~-----------gp~~wHPaS~-------------Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~ 281 (342)
T KOG1576|consen 226 VINASALSMGLLTNQ-----------GPPPWHPASD-------------ELKEAAKAAAEYCQSRNVELGKLAMYYAMSL 281 (342)
T ss_pred EEehhhHHHHHhhcC-----------CCCCCCCCCH-------------HHHHHHHHHHHHHHHcCccHHHHHHHHHHcc
Confidence 999999999999863 3333444333 3445557788999999999999999999999
Q ss_pred CCceeeeecccCCcHHHHHHhhhhhcCCCCH----HHHHHHHHHHhhCCCCCCccCCccccc
Q 022889 231 PAVAGSMIGVRLGLAEHIQDTNAIFMLSLDE----DDVNSIQEVTKKGKDLLGVIGDCGDEY 288 (290)
Q Consensus 231 ~~v~~~l~g~~~~~~~~l~enl~a~~~~L~~----e~~~~l~~~~~~~~~~~~~~~~~~~~~ 288 (290)
|+++++++|+++ .++++.|+++..-.||. +....+++.++..++.-+..|.-.++|
T Consensus 282 ~~~~~~lvGm~s--~~~l~~nLdan~~~ls~~~~Qevl~~~r~~~~~~kn~~W~g~~~~~yw 341 (342)
T KOG1576|consen 282 PGVSTVLVGMSS--RQLLRINLDANFDRLSSKHEQEVLRILREILKETKNEEWEGGILHPYW 341 (342)
T ss_pred CCcceEEecCch--HHHHHHHHHhhhccccchhHHHHHHHHHHHhhhhccCCCCCCCCcccc
Confidence 999999999999 99999999987657777 333344445544444444445555555
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.95 E-value=2.3e-05 Score=65.48 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc-CCCeeEecccccccCCCcchHHHHHHHHhCCceeeec
Q 022889 83 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 83 ~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 155 (290)
+.+.|..||+++.+|+|..||+|.|++.+|+++... .+.|..+|+...-...- ..++..+|.+++|.+..++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvv-PpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVV-PPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccC-CHHHHHHhhhcceeeeecC
Confidence 457899999999999999999999999999999974 57899999998775444 4699999999999999876
No 19
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=87.14 E-value=18 Score=31.04 Aligned_cols=107 Identities=11% Similarity=0.009 Sum_probs=78.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeE
Q 022889 45 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 124 (290)
Q Consensus 45 ~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 124 (290)
.+++++...+-.+-..+-+++++|-|=.+..+....++..+++++.++|+++|.+ -+=+++-++...+++.+.+ +++
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~-vlpyc~dd~~~ar~l~~~G--~~~ 147 (248)
T cd04728 71 GCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFT-VLPYCTDDPVLAKRLEDAG--CAA 147 (248)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHcC--CCE
Confidence 4778888888888999999999999999998888778899999999999999986 3446677888888877754 455
Q ss_pred ecccccccCCC--c-chHHHHHHHH-hCCceeee
Q 022889 125 NQVQHSVVDMR--P-QQKMAELCQL-TGVKLITY 154 (290)
Q Consensus 125 ~q~~~n~~~~~--~-~~~~~~~~~~-~gi~via~ 154 (290)
++.--+++-.. . ..+++...++ .++.|++-
T Consensus 148 vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 148 VMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred eCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 54422333211 1 2355666555 47777764
No 20
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=84.21 E-value=7.4 Score=32.15 Aligned_cols=113 Identities=17% Similarity=0.191 Sum_probs=76.0
Q ss_pred CCCHHHHHHHH-----------HHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHH
Q 022889 46 KMTSSIVRESI-----------DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRI 114 (290)
Q Consensus 46 ~~~~~~i~~~~-----------e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~ 114 (290)
+.+.+.+.+++ ++.|....-+.+|...+...--. +...-..|+++.+-|+-.-+++.||..+..+.
T Consensus 43 Eid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~---~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~ 119 (193)
T PF07021_consen 43 EIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA---VRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRL 119 (193)
T ss_pred ecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHh---HhHHHHHHHHHHHhcCeEEEEecChHHHHHHH
Confidence 34556555555 44555555556666665433111 23344557788888988889999999998876
Q ss_pred HHH-cCCCeeEecccccccCCCc-----chHHHHHHHHhCCceeeeccccccc
Q 022889 115 ILE-NGIPVVSNQVQHSVVDMRP-----QQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 115 ~~~-~~~~~~~~q~~~n~~~~~~-----~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
-+- .|--|..-.++|+-.+... -.+.-++|++.||.+.-..++.++.
T Consensus 120 ~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 120 QLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 554 4645677778887665322 2477889999999999999987764
No 21
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=82.81 E-value=7.4 Score=33.49 Aligned_cols=106 Identities=14% Similarity=0.084 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcC-cccEEEccCCCHHHHHHHHHcCCCeeE
Q 022889 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 124 (290)
Q Consensus 46 ~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~ 124 (290)
.++.+...+-++. |..+|+++|.+-..-.+... +...+.++.++.+++.+ .++...++......++.+.+.+ ++.
T Consensus 15 ~~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g--~~~ 90 (265)
T cd03174 15 TFSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG--VDE 90 (265)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC--cCE
Confidence 4566655555544 77899999888666444322 22456778888888888 5666677765677788887765 344
Q ss_pred ecccccccC--------CCc------chHHHHHHHHhCCceeeec
Q 022889 125 NQVQHSVVD--------MRP------QQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 125 ~q~~~n~~~--------~~~------~~~~~~~~~~~gi~via~s 155 (290)
+++.+..-+ +.. -...+.++++.|+.+...-
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 444443321 111 1256788899998766654
No 22
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=81.08 E-value=16 Score=31.79 Aligned_cols=67 Identities=4% Similarity=-0.054 Sum_probs=49.6
Q ss_pred HHHHHHcCcccEEEc--cCCCHHHHHHHHHcCCCeeEecccccccCCCcchHHHHHHHHhCCceeeeccc
Q 022889 90 LTDLKEEGKIKTVAL--TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 90 l~~l~~~G~ir~iGv--s~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 157 (290)
|.+..++|+. .+|+ ..-++...+.+...|+.+.++=.+..+++...-..++..|+..|+..+..-|-
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~ 78 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT 78 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 4555556775 4553 33455666666667889999999999988776678899999999999988765
No 23
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=79.88 E-value=37 Score=28.97 Aligned_cols=110 Identities=13% Similarity=0.066 Sum_probs=72.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeE
Q 022889 45 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 124 (290)
Q Consensus 45 ~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 124 (290)
.+++++.-.+-.+-+.+-+++|+|-|=.+-+.+.-.+|.-|++++-+.|+++|-+-- =..+-++-..+++.+.| +.+
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~Vl-PY~~dD~v~arrLee~G--caa 154 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVL-PYTTDDPVLARRLEEAG--CAA 154 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEe-eccCCCHHHHHHHHhcC--ceE
Confidence 467888888888889999999999999998888878888999999999999998632 22333444455555533 455
Q ss_pred ecccccccCCC--c--chHHHHHHHHhCCceeeeccc
Q 022889 125 NQVQHSVVDMR--P--QQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 125 ~q~~~n~~~~~--~--~~~~~~~~~~~gi~via~spl 157 (290)
++.--+++--. . ...+.-...+.++++|.=.-+
T Consensus 155 vMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGi 191 (262)
T COG2022 155 VMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGI 191 (262)
T ss_pred eccccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCC
Confidence 55444444211 0 112222334446777765433
No 24
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=79.85 E-value=33 Score=30.46 Aligned_cols=84 Identities=10% Similarity=-0.066 Sum_probs=51.1
Q ss_pred HHHHHHHHhhhhcCCCCceeeeeeeccccCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHH
Q 022889 12 EDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLT 91 (290)
Q Consensus 12 E~~lG~~l~~~~r~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~ 91 (290)
+..+..-++..+.... .+++++++.....-.....+++.+.+++..-+.+-+.|.||+=.=+........+.....+|.
T Consensus 53 ~~~~~~~i~~lk~~G~-kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~ 131 (294)
T cd06543 53 GGWIKSDIAALRAAGG-DVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALA 131 (294)
T ss_pred chhHHHHHHHHHHcCC-eEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHH
Confidence 3344444554443333 566666654421111134588899999999999999999999554432212112466777777
Q ss_pred HHHHc
Q 022889 92 DLKEE 96 (290)
Q Consensus 92 ~l~~~ 96 (290)
.|+++
T Consensus 132 ~Lq~~ 136 (294)
T cd06543 132 LLQKE 136 (294)
T ss_pred HHHHH
Confidence 77776
No 25
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=76.97 E-value=1.5 Score=39.74 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=35.6
Q ss_pred CcccEEEccCCCHHHHHHHHHcCCCeeEecccccccCCCcchHHHHHHHHhCCc
Q 022889 97 GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVK 150 (290)
Q Consensus 97 G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 150 (290)
|+|||+||--++.+.+.++....-.-++.+.+..++---.+..++..+++.||+
T Consensus 264 GriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 264 GRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred cceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 999999999999999998876322233333333333222345677777777765
No 26
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=74.75 E-value=31 Score=29.77 Aligned_cols=66 Identities=5% Similarity=-0.150 Sum_probs=47.2
Q ss_pred HHHHHcCcccEEEc--cCCCHHHHHHHHHcCCCeeEecccccccCCCcchHHHHHHHHhCCceeeeccc
Q 022889 91 TDLKEEGKIKTVAL--TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 91 ~~l~~~G~ir~iGv--s~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 157 (290)
.+-.++|+. .+|+ ..-++...+.+...|+.+.++=++..+++...-..++..++..|+..+..-|-
T Consensus 4 k~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 4 RQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred HHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 344455664 3553 33455566666667888999999999988766668888889999998888764
No 27
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=74.56 E-value=17 Score=32.28 Aligned_cols=141 Identities=18% Similarity=0.206 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhhCCCcccEEEeecCCCC---CccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHH--HHcCCCee
Q 022889 49 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII--LENGIPVV 123 (290)
Q Consensus 49 ~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~---~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~--~~~~~~~~ 123 (290)
.+.+++.+.+-+++.|+|++=++-+-.-... .+....++++|++..+++.-. -++..+... ++.+. .
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl~~g~--~ 202 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAALEAGV--P 202 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHHHTTE--E
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHHHCCC--C
Confidence 3568899999999999885544333222210 111345788888888876532 233333332 23343 3
Q ss_pred EecccccccCCCcchHHHHHHHHhCCceeee---cccccccccccccCCCCCCCCCCCCCCCchhhHhhhhhhccCCchh
Q 022889 124 SNQVQHSVVDMRPQQKMAELCQLTGVKLITY---GTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQ 200 (290)
Q Consensus 124 ~~q~~~n~~~~~~~~~~~~~~~~~gi~via~---spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
++-.-=+. -.....+.+.++++|+.+.+- +|++.|++-
T Consensus 203 fvN~tP~~--~a~~P~l~ela~~~gvpi~GdD~KT~lAAplvl------------------------------------- 243 (295)
T PF07994_consen 203 FVNGTPSN--IADDPALVELAEEKGVPIAGDDGKTPLAAPLVL------------------------------------- 243 (295)
T ss_dssp EEE-SSST--TTTSHHHHHHHHHHTEEEEESSBS-HHHHHHHH-------------------------------------
T ss_pred eEeccCcc--ccCCHHHHHHHHHcCCCeecchHhhhhhhHHHH-------------------------------------
Confidence 32222222 122348999999999988764 233333221
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHhhCCCceeeeecccC
Q 022889 201 FQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRL 242 (290)
Q Consensus 201 ~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~~l~g~~~ 242 (290)
. +-++.++|.+.|+...+-.++|....|.+. .|.+.
T Consensus 244 --D-Lirl~~la~r~g~~Gv~~~ls~ffK~P~~~---~g~~~ 279 (295)
T PF07994_consen 244 --D-LIRLAKLALRRGMGGVQEWLSFFFKSPMVP---PGPPQ 279 (295)
T ss_dssp --H-HHHHHHHHHHTTS-EEHHHHHHHBSS-T-----TTSTT
T ss_pred --H-HHHHHHHHHHcCCCChhHHHHHHhcCCCcc---CCCCC
Confidence 1 257889999999988999999999999743 55554
No 28
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=74.28 E-value=31 Score=28.67 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHhhCCCceeeeecccCCcHHHHHHhhhhh
Q 022889 216 GVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 255 (290)
Q Consensus 216 ~~s~~q~al~~~l~~~~v~~~l~g~~~~~~~~l~enl~a~ 255 (290)
..|-.++||+|++.++.-..++.|+.-+..+|.-.|+..+
T Consensus 71 D~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 71 DTTDLELALKYALERGADEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 3577889999999887666788899888889998888876
No 29
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=72.91 E-value=44 Score=29.21 Aligned_cols=67 Identities=7% Similarity=0.047 Sum_probs=48.3
Q ss_pred HHHHHHcCcccEEEc--cCCCHHHHHHHHHcCCCeeEecccccccCCCcchHHHHHHHHhCCceeeeccc
Q 022889 90 LTDLKEEGKIKTVAL--TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 90 l~~l~~~G~ir~iGv--s~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 157 (290)
|.+..++|+. .+|. ..-++...+.+...|+.+.++=.+..+++......++..++..|+..+..-|-
T Consensus 9 lk~~L~~G~~-~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~ 77 (267)
T PRK10128 9 FKEGLRKGEV-QIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVE 77 (267)
T ss_pred HHHHHHcCCc-eEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCC
Confidence 4455556775 3443 33355666666667888999999999988776667888899999988887763
No 30
>PLN02363 phosphoribosylanthranilate isomerase
Probab=71.66 E-value=26 Score=30.44 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEcc-CCCHHHHHHHHHcCCCeeEec
Q 022889 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 126 (290)
Q Consensus 48 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~q 126 (290)
+.+.++... ++|.|||=+.+...-..... .+....+.+......++.+||. |-+.+.+.++++ ...++++|
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs--~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~-~~~ld~VQ 127 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKRSIS--LSVAKEISQVAREGGAKPVGVFVDDDANTILRAAD-SSDLELVQ 127 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCCcCC--HHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHH-hcCCCEEE
Confidence 445554443 58999999864322112222 3444444444443246679986 778888888877 45789999
Q ss_pred cccc
Q 022889 127 VQHS 130 (290)
Q Consensus 127 ~~~n 130 (290)
+.-+
T Consensus 128 LHG~ 131 (256)
T PLN02363 128 LHGN 131 (256)
T ss_pred ECCC
Confidence 9754
No 31
>PRK06424 transcription factor; Provisional
Probab=71.42 E-value=15 Score=28.92 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhhCCCceeeeecccCCcHHHHHHhhhhhcCCCCH
Q 022889 203 VLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDE 261 (290)
Q Consensus 203 ~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~~l~g~~~~~~~~l~enl~a~~~~L~~ 261 (290)
.+-+.++.+.++.|+|..++|-+--.+...++..--|-+..+.+.+....++++..|++
T Consensus 84 ~~g~~Ir~lRe~~GLSQ~eLA~~iGvs~stIskiE~G~~~Ps~~~l~kLa~~Lgvsl~e 142 (144)
T PRK06424 84 DYAELVKNARERLSMSQADLAAKIFERKNVIASIERGDLLPDIKTARKLEKILGITLIE 142 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCCC
Confidence 34477888888899999999876665544444444444433355555555555555543
No 32
>PRK00208 thiG thiazole synthase; Reviewed
Probab=70.66 E-value=70 Score=27.62 Aligned_cols=107 Identities=11% Similarity=0.019 Sum_probs=78.4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeE
Q 022889 45 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 124 (290)
Q Consensus 45 ~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 124 (290)
.+++.+...+-.+-..+-+++++|-|=.+..+....+++.+++++.++|+++|.+ -+=+++-++....++.+.| +++
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~-vlpyc~~d~~~ak~l~~~G--~~~ 147 (250)
T PRK00208 71 GCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV-VLPYCTDDPVLAKRLEEAG--CAA 147 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHcC--CCE
Confidence 4778888888888899999999999999988888888899999999999999986 3446677888888777754 455
Q ss_pred ecccccccCCC--c-chHHHHHHHH-hCCceeee
Q 022889 125 NQVQHSVVDMR--P-QQKMAELCQL-TGVKLITY 154 (290)
Q Consensus 125 ~q~~~n~~~~~--~-~~~~~~~~~~-~gi~via~ 154 (290)
++.-=+++-.. . ..+++....+ .++.|++-
T Consensus 148 vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 148 VMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred eCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 53322333111 0 2355666666 47777764
No 33
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=69.14 E-value=15 Score=34.79 Aligned_cols=59 Identities=22% Similarity=0.243 Sum_probs=48.6
Q ss_pred HHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEe
Q 022889 59 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 125 (290)
Q Consensus 59 SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~ 125 (290)
.-+|+.+.|+|.+ ..+++|++.-.++.+++|+...||+-..-++.+.++++.++.|+++
T Consensus 194 i~kR~~~gyld~~--------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlv 252 (545)
T TIGR01228 194 IDKRLETKYCDEQ--------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVV 252 (545)
T ss_pred HHHHHhcCcceeE--------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCc
Confidence 3457888888864 2238999999999999999999999998899999999877666654
No 34
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=69.14 E-value=10 Score=35.43 Aligned_cols=61 Identities=21% Similarity=0.201 Sum_probs=50.2
Q ss_pred HHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEeccc
Q 022889 60 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQ 128 (290)
Q Consensus 60 L~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~ 128 (290)
-+||.+.|+|.. ..+++|++.-.++..++|+-..||+-..-++.+..+++.++.|+++-=+
T Consensus 204 ~~Rl~t~y~d~~--------a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQ 264 (561)
T COG2987 204 DKRLRTGYLDEI--------AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQ 264 (561)
T ss_pred HHHHhcchhhhh--------cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceeccc
Confidence 357888898862 2238999999999999999999999998999999999877777775443
No 35
>PRK05414 urocanate hydratase; Provisional
Probab=69.12 E-value=15 Score=34.87 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=48.8
Q ss_pred HHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEe
Q 022889 59 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 125 (290)
Q Consensus 59 SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~ 125 (290)
.-+|+.+.|+|.+- .+++|++.-.++.+++|+...||+-..-++.+.++++.++.|+++
T Consensus 203 i~kR~~~gyld~~~--------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlv 261 (556)
T PRK05414 203 IDKRLRTGYLDEKA--------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLV 261 (556)
T ss_pred HHHHHhCCcceeEc--------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCcc
Confidence 34678888888742 238999999999999999999999998899999999877666654
No 36
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.13 E-value=27 Score=29.11 Aligned_cols=88 Identities=10% Similarity=0.117 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccC-CCHHHHHHHHHcCCCeeEec
Q 022889 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 126 (290)
Q Consensus 48 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~q 126 (290)
+++...+-++ .|-+-|...|-+= +- + .+.++.+++++++..=-.||..+ .+.++++.+++.|-.|.+
T Consensus 14 ~~~~a~~ia~-al~~gGi~~iEit---~~---t---p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv-- 81 (201)
T PRK06015 14 DVEHAVPLAR-ALAAGGLPAIEIT---LR---T---PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV-- 81 (201)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEe---CC---C---ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEE--
Confidence 4555544444 4446665544432 21 1 33555666666654435799987 478999999987765543
Q ss_pred ccccccCCCcchHHHHHHHHhCCceee
Q 022889 127 VQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 127 ~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
.+....+++++|+++||.++.
T Consensus 82 ------SP~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 82 ------SPGTTQELLAAANDSDVPLLP 102 (201)
T ss_pred ------CCCCCHHHHHHHHHcCCCEeC
Confidence 234466999999999998886
No 37
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=66.54 E-value=27 Score=29.19 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccC-CCHHHHHHHHHcCCCeeEec
Q 022889 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 126 (290)
Q Consensus 48 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~q 126 (290)
+++...+ +-+.|-.-|...+-+= +- ....++.+++++++..=-.+|..+ .+.++++.+.+.|-.|.+
T Consensus 18 ~~e~a~~-~~~al~~~Gi~~iEit---~~------t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv-- 85 (204)
T TIGR01182 18 DVDDALP-LAKALIEGGLRVLEVT---LR------TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV-- 85 (204)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEe---CC------CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE--
Confidence 4454444 3445556776544432 21 133555666666654335799987 478999999987765552
Q ss_pred ccccccCCCcchHHHHHHHHhCCceee
Q 022889 127 VQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 127 ~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
+ +....+++++|+++||.++.
T Consensus 86 ---s---P~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 86 ---S---PGLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred ---C---CCCCHHHHHHHHHcCCcEEC
Confidence 2 23356999999999998886
No 38
>PRK07328 histidinol-phosphatase; Provisional
Probab=66.30 E-value=88 Score=27.13 Aligned_cols=98 Identities=12% Similarity=0.233 Sum_probs=53.9
Q ss_pred HHHHHHHhhCCCcccEEEeecCCCC---C---------ccHHHHH----HHHHHHHHcCcccEEEccCC-------C---
Q 022889 55 SIDVSRRRMDVPCLDMLQFHWWDYS---N---------PGYLDAL----NHLTDLKEEGKIKTVALTNF-------D--- 108 (290)
Q Consensus 55 ~~e~SL~~L~~d~iDl~~lH~~~~~---~---------~~~~e~~----~~l~~l~~~G~ir~iGvs~~-------~--- 108 (290)
.+++.|++-..||+ +..+|+.+.. . .+.++++ +.+.++++.|.+.-+|=-.. .
T Consensus 96 ~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~~~~ 174 (269)
T PRK07328 96 FLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHRPRED 174 (269)
T ss_pred HHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCCCchh
Confidence 34444555445555 5667885421 0 1122333 35777888888877774432 1
Q ss_pred -----HHHHHHHHHcCCCeeEeccc--ccccCCCcchHHHHHHHHhCCceee
Q 022889 109 -----TERLRIILENGIPVVSNQVQ--HSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 109 -----~~~l~~~~~~~~~~~~~q~~--~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
.+.++.+.+.+..+.+|--. +..-...+...++..|++.|+.++.
T Consensus 175 ~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~iti 226 (269)
T PRK07328 175 LTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPVVL 226 (269)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEEE
Confidence 12233444456666666532 2222234456899999999998543
No 39
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=65.03 E-value=48 Score=27.73 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=42.4
Q ss_pred HhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEcc-CCCHHHHHHHHHcCCCeeEeccccc
Q 022889 61 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHS 130 (290)
Q Consensus 61 ~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~q~~~n 130 (290)
..+|.|++=+.+...-..... .+....+.... .+.+..+||. |-+.+.+.++.+ ...++++|+.-+
T Consensus 20 ~~~Gad~iGfI~~~~S~R~V~--~~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~-~~~~d~vQLHg~ 86 (210)
T PRK01222 20 AELGADAIGFVFYPKSPRYVS--PEQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVE-TVPLDLLQLHGD 86 (210)
T ss_pred HHcCCCEEEEccCCCCCCcCC--HHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHH-hcCCCEEEECCC
Confidence 468999999864322111122 34444444333 3568899988 668888888877 457899999764
No 40
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=64.77 E-value=22 Score=30.10 Aligned_cols=102 Identities=20% Similarity=0.252 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHH-cCCCeeEecccccccCCCcchHHHHHHHHhCCceeeeccccccc
Q 022889 83 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 83 ~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~-~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
++++.++|..++-+|.+--==.|.+....++.+.+ .|.. .|.|+....+.+++...-+.|..++.-+.-+.|+
T Consensus 75 ve~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~lGl~------~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~gL 148 (223)
T COG2102 75 VEELKEALRRLKVDGIVAGAIASEYQKERVERLCEELGLK------VYAPLWGRDPEELLEEMVEAGFEAIIVAVSAEGL 148 (223)
T ss_pred HHHHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHhCCE------EeecccCCCHHHHHHHHHHcCCeEEEEEEeccCC
Confidence 67788888888744332111134456667777776 2432 2456666666788888888888877777777774
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhHhhhhhhccCCchhHHHHHHHHHHHHHHhCCCHH
Q 022889 162 LSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIP 220 (290)
Q Consensus 162 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~ 220 (290)
-. .+. +. ......++.+..+.++||+.|+
T Consensus 149 ~~-~~l---------Gr--------------------~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 149 DE-SWL---------GR--------------------RIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred Ch-HHh---------CC--------------------ccCHHHHHHHHHHHHhcCCCcc
Confidence 21 110 11 1122445899999999998763
No 41
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=64.43 E-value=25 Score=29.36 Aligned_cols=67 Identities=12% Similarity=0.250 Sum_probs=44.0
Q ss_pred HHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEcc-CCCHHHHHHHHHcCCCeeEeccccc
Q 022889 60 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHS 130 (290)
Q Consensus 60 L~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~q~~~n 130 (290)
+..+|.||+=+.+...-..... .+....+..... +.++.+||. |.+.+.+.++.+ ...++++|+.-+
T Consensus 17 ~~~~GaD~iGfIf~~~SpR~V~--~~~a~~i~~~~~-~~~~~VgVf~~~~~~~i~~~~~-~~~~d~vQLHG~ 84 (207)
T PRK13958 17 ASQLPIDAIGFIHYEKSKRHQT--ITQIKKLASAVP-NHIDKVCVVVNPDLTTIEHILS-NTSINTIQLHGT 84 (207)
T ss_pred HHHcCCCEEEEecCCCCcccCC--HHHHHHHHHhCC-CCCCEEEEEeCCCHHHHHHHHH-hCCCCEEEECCC
Confidence 4569999999864332212222 344444444333 468889997 778899988887 457899999764
No 42
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=64.08 E-value=49 Score=27.48 Aligned_cols=102 Identities=18% Similarity=0.164 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCC--HHHHHHHHHcCCCeeEecc
Q 022889 50 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD--TERLRIILENGIPVVSNQV 127 (290)
Q Consensus 50 ~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~--~~~l~~~~~~~~~~~~~q~ 127 (290)
+.....+...++..+...-.+++--...........+...+..+++.|- .+++.++. ...+..+.. .+++++-+
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~l~~--~~~d~iKl 173 (240)
T cd01948 98 PDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSYLKR--LPVDYLKI 173 (240)
T ss_pred cHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHHHHh--CCCCEEEE
Confidence 3456777788888877643333222221111224568899999999998 67777764 344445544 45777777
Q ss_pred cccccCCCc--------chHHHHHHHHhCCceeeec
Q 022889 128 QHSVVDMRP--------QQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 128 ~~n~~~~~~--------~~~~~~~~~~~gi~via~s 155 (290)
..+++.... -..++..|+..|+.+++-.
T Consensus 174 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 174 DRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred CHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 665553211 1367888999999998854
No 43
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=63.98 E-value=69 Score=26.90 Aligned_cols=82 Identities=11% Similarity=0.055 Sum_probs=50.7
Q ss_pred HHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCc-ccEEEcc-CCCHHHHHHHHHcCCCeeEecccccccCCCcc
Q 022889 60 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALT-NFDTERLRIILENGIPVVSNQVQHSVVDMRPQ 137 (290)
Q Consensus 60 L~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~-ir~iGvs-~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~ 137 (290)
...+|.||+=+.+.-.-..... .+.. .++.+... +..+||. |.+.+.+.++++ ...++++|+.-.. .
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs--~~~a---~~i~~~v~~~~~VgVf~n~~~~~i~~i~~-~~~ld~VQlHG~e-----~ 86 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVS--PEQA---REIASAVPKVKVVGVFVNESIEEILEIAE-ELGLDAVQLHGDE-----D 86 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCC--HHHH---HHHHHhCCCCCEEEEECCCCHHHHHHHHH-hcCCCEEEECCCC-----C
Confidence 3478999988755432111222 2333 33333333 7899998 667888888887 4579999988753 4
Q ss_pred hHHHHHHHHhC-Ccee
Q 022889 138 QKMAELCQLTG-VKLI 152 (290)
Q Consensus 138 ~~~~~~~~~~g-i~vi 152 (290)
.+.++..++.. +.++
T Consensus 87 ~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 87 PEYIDQLKEELGVPVI 102 (208)
T ss_pred HHHHHHHHhhcCCceE
Confidence 46666666654 4444
No 44
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=63.22 E-value=1.1e+02 Score=27.06 Aligned_cols=106 Identities=16% Similarity=0.163 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEe
Q 022889 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 125 (290)
Q Consensus 46 ~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~ 125 (290)
.++.+.. ..+-+.|.++|+++|.+-.++.|... +...+.++.+..+.+...++..++. .+...++.+.+.+.....+
T Consensus 22 ~~s~e~k-~~ia~~L~~~Gv~~IEvgsf~~p~~~-p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~~~v~i 98 (287)
T PRK05692 22 FIPTADK-IALIDRLSAAGLSYIEVASFVSPKWV-PQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGADEVAV 98 (287)
T ss_pred CcCHHHH-HHHHHHHHHcCCCEEEeCCCcCcccc-cccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCCCEEEE
Confidence 4555544 44556689999999999755555321 1123335555555544445555554 4788888888866443222
Q ss_pred ccccccc------CCCc------chHHHHHHHHhCCceeee
Q 022889 126 QVQHSVV------DMRP------QQKMAELCQLTGVKLITY 154 (290)
Q Consensus 126 q~~~n~~------~~~~------~~~~~~~~~~~gi~via~ 154 (290)
-...|-. .+.. -...+++++++|+.+.++
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~ 139 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGY 139 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 2222211 1111 136788999999987643
No 45
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=63.11 E-value=71 Score=26.84 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=56.8
Q ss_pred ccEEEeecCCCCCccHHHHHHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHH
Q 022889 68 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 145 (290)
Q Consensus 68 iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~ 145 (290)
.++.++..|-+.. -++.+.+|.+...+. ..+=|.++.+.+..+++.+ .++++|+..+.+-. ..-..+...|+
T Consensus 120 ~~i~~iEeP~~~~-----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~-~~d~~~~k~~~~GGi~~~~~i~~~a~ 193 (229)
T cd00308 120 YGLAWIEEPCAPD-----DLEGYAALRRRTGIPIAADESVTTVDDALEALELG-AVDILQIKPTRVGGLTESRRAADLAE 193 (229)
T ss_pred cCCCeEECCCCcc-----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcC-CCCEEecCccccCCHHHHHHHHHHHH
Confidence 4566666665322 245566777776554 4455556778777777644 47888887765421 11247889999
Q ss_pred HhCCceeeecccccc
Q 022889 146 LTGVKLITYGTVMGG 160 (290)
Q Consensus 146 ~~gi~via~spl~~G 160 (290)
++|+.++..+.+..|
T Consensus 194 ~~gi~~~~~~~~~s~ 208 (229)
T cd00308 194 AFGIRVMVHGTLESS 208 (229)
T ss_pred HcCCEEeecCCCCCH
Confidence 999999998876554
No 46
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=62.37 E-value=1e+02 Score=26.58 Aligned_cols=104 Identities=15% Similarity=0.107 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEE-eecCCCCC----ccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCC
Q 022889 47 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSN----PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 121 (290)
Q Consensus 47 ~~~~~i~~~~e~SL~~L~~d~iDl~~-lH~~~~~~----~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 121 (290)
.+.+.+.+..++.+ .-|-|.||+=. --+|+... ...+.+...++.+++.-.+ -+.+-++.++.++++++.+.+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 46777777777665 67899999942 23343211 1123456666677665233 488889999999999986622
Q ss_pred eeEecccccccCCCcchHHHHHHHHhCCceeeeccc
Q 022889 122 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 122 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 157 (290)
.+|-+ +..+ ...++++.+++.|++++.+..-
T Consensus 99 -iINdi--s~~~--~~~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 99 -IINDV--SGGR--GDPEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred -EEEeC--CCCC--CChHHHHHHHHcCCCEEEECcC
Confidence 22222 2211 1157899999999999998754
No 47
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=60.04 E-value=34 Score=28.42 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=38.5
Q ss_pred HHHHHHHHcCcccEEEccC-CCHHHHHHHHHcCCCeeEecccccccCCCcchHHHHHHHHhCCceee
Q 022889 88 NHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 88 ~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
++++.++++--=-.+|+.+ .+.++++.+++.|-.|.+ .+....+++++|+++||.++.
T Consensus 48 ~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fiv--------SP~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 48 EAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIV--------SPGFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEE--------ESS--HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEE--------CCCCCHHHHHHHHHcCCcccC
Confidence 3344444332224699987 578999999987765554 234466999999999999986
No 48
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=58.14 E-value=38 Score=28.34 Aligned_cols=89 Identities=11% Similarity=0.126 Sum_probs=58.1
Q ss_pred hhCCCcccEEEee-cCCCCCcc----HHHHHHHHHHHHH--cCcccEEEccCCCHHHHHHHHHcCCCeeEecccccccCC
Q 022889 62 RMDVPCLDMLQFH-WWDYSNPG----YLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM 134 (290)
Q Consensus 62 ~L~~d~iDl~~lH-~~~~~~~~----~~e~~~~l~~l~~--~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~ 134 (290)
.-|-|+||+=--- +|.....+ ++.+...++.+++ .+. -+.+-++.++.++++++.+.++.-+...+..
T Consensus 30 ~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~g~~~ind~~~~~~--- 104 (210)
T PF00809_consen 30 EAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKAGADIINDISGFED--- 104 (210)
T ss_dssp HTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHHTSSEEEETTTTSS---
T ss_pred HhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHcCcceEEecccccc---
Confidence 5688999983221 22222111 3345556666665 333 5788899999999999877665444444332
Q ss_pred CcchHHHHHHHHhCCceeeeccc
Q 022889 135 RPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 135 ~~~~~~~~~~~~~gi~via~spl 157 (290)
..++++.+++.|..++++..-
T Consensus 105 --~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 --DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp --STTHHHHHHHHTSEEEEESES
T ss_pred --cchhhhhhhcCCCEEEEEecc
Confidence 458999999999999998765
No 49
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=57.00 E-value=1.5e+02 Score=26.87 Aligned_cols=105 Identities=12% Similarity=0.160 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeecC-------CCCCccHHHHHHHHHHHHHcCcccEEEcc---CCCHHHHHH
Q 022889 45 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWW-------DYSNPGYLDALNHLTDLKEEGKIKTVALT---NFDTERLRI 114 (290)
Q Consensus 45 ~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~-------~~~~~~~~e~~~~l~~l~~~G~ir~iGvs---~~~~~~l~~ 114 (290)
+.++.+.+.+-+ +.|.+.|+++|.+-+.-.. .+....-.+.++.+.+.+ ...+...+. ..+...++.
T Consensus 20 ~~f~~~~~~~i~-~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~--~~~~~~~ll~pg~~~~~dl~~ 96 (337)
T PRK08195 20 HQYTLEQVRAIA-RALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVV--KQAKIAALLLPGIGTVDDLKM 96 (337)
T ss_pred CccCHHHHHHHH-HHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhC--CCCEEEEEeccCcccHHHHHH
Confidence 456667655544 4588999999988532111 111111234444443322 234444333 225677777
Q ss_pred HHHcCCCeeEecccccccCCCcchHHHHHHHHhCCceeee
Q 022889 115 ILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 154 (290)
Q Consensus 115 ~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 154 (290)
+.+.++. .+.+..+.-+-..-.+.++++++.|..+...
T Consensus 97 a~~~gvd--~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 97 AYDAGVR--VVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHcCCC--EEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 7776543 3333333222122356788889999876654
No 50
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=56.89 E-value=1.8e+02 Score=27.69 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHH----cCcccEEEcc--CCCHHHHHHHHHcC
Q 022889 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE----EGKIKTVALT--NFDTERLRIILENG 119 (290)
Q Consensus 46 ~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~----~G~ir~iGvs--~~~~~~l~~~~~~~ 119 (290)
..+.+.|.+.++. ++.+|...+-|..=..|. ..+ ++-+.++++.+++ .|.++.++++ ..+.+.+..+.+.|
T Consensus 114 ~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p~-~~~-~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaG 190 (469)
T PRK09613 114 KLTQEEIREEVKA-LEDMGHKRLALVAGEDPP-NCD-IEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAG 190 (469)
T ss_pred ECCHHHHHHHHHH-HHHCCCCEEEEEeCCCCC-CCC-HHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcC
Confidence 4688999999985 578998777664323322 223 6767777777775 4667766665 56889999999877
Q ss_pred CC-eeEeccccccc-----CCC-----cc--hHHHHHHHHhCCceeeecc
Q 022889 120 IP-VVSNQVQHSVV-----DMR-----PQ--QKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 120 ~~-~~~~q~~~n~~-----~~~-----~~--~~~~~~~~~~gi~via~sp 156 (290)
+. +.+.|--||.- ... .+ -..++.+++.||.-++.+.
T Consensus 191 v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~ 240 (469)
T PRK09613 191 IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGV 240 (469)
T ss_pred CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEE
Confidence 53 56666666531 111 11 1567888888987555433
No 51
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=56.53 E-value=1.8e+02 Score=27.79 Aligned_cols=107 Identities=9% Similarity=-0.010 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcC-cccEEEccC----C--CHHHHHHHHHcC
Q 022889 47 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTN----F--DTERLRIILENG 119 (290)
Q Consensus 47 ~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G-~ir~iGvs~----~--~~~~l~~~~~~~ 119 (290)
.+++.|.+.++...++.|+.++ .+...++... ...+.+.++++++.| .-..+++++ . +.+.+..+.+.|
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~-~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG 297 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEPTIN-RKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAG 297 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEecccccC-HHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhC
Confidence 4788899999998888886543 3444333333 455677778888887 434555543 1 455666666655
Q ss_pred CCeeEe------cccccccCCCc----chHHHHHHHHhCCceeeeccc
Q 022889 120 IPVVSN------QVQHSVVDMRP----QQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 120 ~~~~~~------q~~~n~~~~~~----~~~~~~~~~~~gi~via~spl 157 (290)
..-..+ +-....++... ..+.+..|++.||.+.+.-.+
T Consensus 298 ~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~ 345 (497)
T TIGR02026 298 LVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT 345 (497)
T ss_pred CcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 321111 11111222211 136788899999987654433
No 52
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=56.52 E-value=1.3e+02 Score=26.05 Aligned_cols=100 Identities=8% Similarity=-0.001 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc--CCCeeEe
Q 022889 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVSN 125 (290)
Q Consensus 48 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~~ 125 (290)
+.+.+.+..++.. .-|-|.||+=.- +..... .+.+...++.+++.-. .-+.+-+++++.++++++. |. ..+|
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~eE-~~r~~~~v~~l~~~~~-~plsIDT~~~~v~eaaL~~~~G~-~iIN 96 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG--TAVEEE-PETMEWLVETVQEVVD-VPLCIDSPNPAAIEAGLKVAKGP-PLIN 96 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC--CCchhH-HHHHHHHHHHHHHhCC-CCEEEeCCCHHHHHHHHHhCCCC-CEEE
Confidence 4556666655554 678999999532 111111 3445556666655422 2478889999999999985 52 3333
Q ss_pred cccccccCCCcchHHHHHHHHhCCceeeecc
Q 022889 126 QVQHSVVDMRPQQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 126 q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 156 (290)
-+.. .. .....+++.+++.|+.++.+..
T Consensus 97 sIs~--~~-~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 97 SVSA--EG-EKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred eCCC--CC-ccCHHHHHHHHHhCCCEEEEec
Confidence 2222 11 1134789999999999998754
No 53
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=55.58 E-value=29 Score=33.05 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=43.6
Q ss_pred HHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEe
Q 022889 59 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 125 (290)
Q Consensus 59 SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~ 125 (290)
.-+|+.+.|+|.+. .++++++.-.++.+++|+...||+-..-++.++++++.++.|+++
T Consensus 193 i~kR~~~g~ld~~~--------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~ 251 (546)
T PF01175_consen 193 IEKRLEQGYLDEVT--------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLV 251 (546)
T ss_dssp HHHHHHTTSSSEEE--------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE
T ss_pred HHHHHhCCCeeEEc--------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcc
Confidence 34577778888742 238999999999999999999999998899999999877665554
No 54
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=55.33 E-value=97 Score=28.51 Aligned_cols=89 Identities=15% Similarity=0.063 Sum_probs=58.8
Q ss_pred EEeecCCCC----------CccHHHHHHHHHHHHHc-Cc---ccEEEcc--CCCHHHHHHHHH--cCC------CeeEec
Q 022889 71 LQFHWWDYS----------NPGYLDALNHLTDLKEE-GK---IKTVALT--NFDTERLRIILE--NGI------PVVSNQ 126 (290)
Q Consensus 71 ~~lH~~~~~----------~~~~~e~~~~l~~l~~~-G~---ir~iGvs--~~~~~~l~~~~~--~~~------~~~~~q 126 (290)
+.||.|+.. ..+++++++++.+..+. |+ +-|+=+. |.+.+...++.+ .+. ++.+|-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 678988532 12378999999988654 32 1222222 556666666554 355 689999
Q ss_pred ccccccCCC----cc----hHHHHHHHHhCCceeeeccccc
Q 022889 127 VQHSVVDMR----PQ----QKMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 127 ~~~n~~~~~----~~----~~~~~~~~~~gi~via~spl~~ 159 (290)
++||+.... +. ....+.++++||.+......|.
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 999997532 11 2456678899999999987764
No 55
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=55.14 E-value=1.3e+02 Score=26.00 Aligned_cols=106 Identities=14% Similarity=0.103 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCC----CccHHHHHHHHHHHHHc-CcccEEEcc---CCCHHHHHHHHH
Q 022889 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS----NPGYLDALNHLTDLKEE-GKIKTVALT---NFDTERLRIILE 117 (290)
Q Consensus 46 ~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~----~~~~~e~~~~l~~l~~~-G~ir~iGvs---~~~~~~l~~~~~ 117 (290)
.++.+... .+-+.|.++|+++|.+-+....... .+.....++.++.+++. +.++...+. ......++.+.+
T Consensus 18 ~~~~~~k~-~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQVR-AIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHHH-HHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 34555444 4444588889999888755321100 00011234444555332 335555554 234566777776
Q ss_pred cCCCeeEecccccccCCCcchHHHHHHHHhCCceeee
Q 022889 118 NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 154 (290)
Q Consensus 118 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 154 (290)
.++ +.+.+..+.-+...-.+.++++++.|+.+...
T Consensus 97 ~g~--~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 LGV--DVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred cCC--CEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 553 33333332211112346788888888765543
No 56
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.15 E-value=62 Score=27.23 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCc---ccEEEccC-CCHHHHHHHHHcCCCee
Q 022889 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK---IKTVALTN-FDTERLRIILENGIPVV 123 (290)
Q Consensus 48 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~---ir~iGvs~-~~~~~l~~~~~~~~~~~ 123 (290)
+.+....-+ +.|-.-|..-+-+= +- . ...++++++++++-. =-.||+.+ .+.++++.+.+.|-.|.
T Consensus 23 ~~~~a~~~~-~al~~~Gi~~iEit---~~---~---~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 23 SKEEALKIS-LAVIKGGIKAIEVT---YT---N---PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEE---CC---C---ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 445444433 44556665444432 21 1 235556666665421 13699887 47899999998776655
Q ss_pred EecccccccCCCcchHHHHHHHHhCCceee
Q 022889 124 SNQVQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 124 ~~q~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
+ + +....+++++|+++||.++.
T Consensus 93 v-----s---P~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 93 V-----S---PSFNRETAKICNLYQIPYLP 114 (213)
T ss_pred E-----C---CCCCHHHHHHHHHcCCCEEC
Confidence 4 2 34456999999999999886
No 57
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=53.99 E-value=1.4e+02 Score=25.62 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=45.0
Q ss_pred HHHHHHcCcccEEE--ccCCCHHHHHHHHHcCCCeeEecccccccCCCcchHHHHHHHHhCCceeeecc
Q 022889 90 LTDLKEEGKIKTVA--LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 90 l~~l~~~G~ir~iG--vs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 156 (290)
|.+..++|+. .+| +...++..++.+...++.+.++=++.++++...-..++..++..|+.++..-|
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 4455566875 344 33445666777777788888888999987654444577777777888777755
No 58
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=53.86 E-value=1.5e+02 Score=25.70 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEE-EeecCCCCCcc-HHH---HHHHHHHHHHc-CcccEEEccCCCHHHHHHHHHcCC
Q 022889 47 MTSSIVRESIDVSRRRMDVPCLDML-QFHWWDYSNPG-YLD---ALNHLTDLKEE-GKIKTVALTNFDTERLRIILENGI 120 (290)
Q Consensus 47 ~~~~~i~~~~e~SL~~L~~d~iDl~-~lH~~~~~~~~-~~e---~~~~l~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~ 120 (290)
.+++.+.+.+++.+ .-|-|+||+= .--.|+....+ -+| +...++.+++. +. -+.+-+++++.++.+++.|.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 56777777777665 5689999992 11223322111 123 66666667666 54 48888999999999998764
Q ss_pred CeeEecccccccCCCcchHHHHHHHHhCCceeeecc
Q 022889 121 PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 121 ~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 156 (290)
+ .++-+ +... ..++++.+++.|..++.+.-
T Consensus 97 ~-iINsi--s~~~---~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 97 D-IINDV--SGGQ---DPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred C-EEEEC--CCCC---CchhHHHHHHcCCcEEEEeC
Confidence 3 22222 2211 45789999999999999653
No 59
>PRK08392 hypothetical protein; Provisional
Probab=53.74 E-value=1.3e+02 Score=25.06 Aligned_cols=82 Identities=13% Similarity=0.160 Sum_probs=49.9
Q ss_pred CCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCC-------C-HHH----HHHHHHcCCCeeEeccccccc
Q 022889 65 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-------D-TER----LRIILENGIPVVSNQVQHSVV 132 (290)
Q Consensus 65 ~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~-------~-~~~----l~~~~~~~~~~~~~q~~~n~~ 132 (290)
.||+ +..+|.+.. .....+-++.+.++.+.|.+.-+|=-.. . ... ++.+.+.+..+.+|-. +
T Consensus 86 ~D~v-I~SvH~~~~-~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt~-~--- 159 (215)
T PRK08392 86 LDYV-IASVHEWFG-RPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISSR-Y--- 159 (215)
T ss_pred CCEE-EEEeecCcC-CcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeCC-C---
Confidence 3655 567785432 2225667788888888998777764321 1 123 2333345666777642 2
Q ss_pred CCCcchHHHHHHHHhCCceee
Q 022889 133 DMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 133 ~~~~~~~~~~~~~~~gi~via 153 (290)
+.+...+++.|++.|+.++.
T Consensus 160 -~~p~~~~l~~~~~~G~~~~i 179 (215)
T PRK08392 160 -RVPDLEFIRECIKRGIKLTF 179 (215)
T ss_pred -CCCCHHHHHHHHHcCCEEEE
Confidence 34556899999999976544
No 60
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=53.74 E-value=1e+02 Score=23.79 Aligned_cols=83 Identities=13% Similarity=0.066 Sum_probs=41.7
Q ss_pred HHHHHhhhhcCCCCceeeeeeeccccCCCCCCCCHHHHHHHHHHHHHhhC--CCcccEEEeecCCCCCccHHHHHHHHHH
Q 022889 15 YGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTD 92 (290)
Q Consensus 15 lG~~l~~~~r~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~e~SL~~L~--~d~iDl~~lH~~~~~~~~~~e~~~~l~~ 92 (290)
|.+++++.+++.. .++...++.........+.-...+.+.++...++|+ .+.+.+.+.-...+..---..+-++|++
T Consensus 7 I~~~~~~~~~~~~-~llfsaHgiP~~~~~~gd~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~~Wl~P~~~~~l~~ 85 (135)
T cd00419 7 IREALAELPREKD-RLLFSAHGLPVRDIKKGDPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDALEE 85 (135)
T ss_pred HHHHHHhcCCCCC-EEEEEcCCCHHHHhhCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCCCCCCCCHHHHHHH
Confidence 4444544323333 455555544322222223346778888888888998 3334444442111110001235567778
Q ss_pred HHHcCc
Q 022889 93 LKEEGK 98 (290)
Q Consensus 93 l~~~G~ 98 (290)
|.++|.
T Consensus 86 l~~~G~ 91 (135)
T cd00419 86 LAKEGV 91 (135)
T ss_pred HHHcCC
Confidence 888873
No 61
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=52.19 E-value=1.6e+02 Score=29.15 Aligned_cols=96 Identities=8% Similarity=-0.018 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEcc-CCCHHHHHHHHHcCCCeeEec
Q 022889 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 126 (290)
Q Consensus 48 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~q 126 (290)
+.+.++.. ..+|.|+|=+.+...-..... .+.+...+.+......+..+||. |-+.+.+.++.+ ...++++|
T Consensus 12 ~~eda~~a-----~~~gaD~iGfIf~~~SpR~V~-~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~-~~~ld~vQ 84 (610)
T PRK13803 12 DSALISKA-----VDMLPDFIGFIFYEKSPRFVG-NKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSK-KNGIDFVQ 84 (610)
T ss_pred cHHHHHHH-----HHcCCCEEEEEecCCCCCCCC-HHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHH-hcCCCEEE
Confidence 34555444 458999999875443222222 23314444444433357789986 778888888876 35789999
Q ss_pred ccccccCCCcchHHHHHHHHhCCcee
Q 022889 127 VQHSVVDMRPQQKMAELCQLTGVKLI 152 (290)
Q Consensus 127 ~~~n~~~~~~~~~~~~~~~~~gi~vi 152 (290)
+.-+-- ......++..++.++.++
T Consensus 85 LHG~e~--~~~~~~~~~l~~~~~~ii 108 (610)
T PRK13803 85 LHGAES--KAEPAYCQRIYKKSIKKI 108 (610)
T ss_pred ECCCCC--cccHHHHHHhhhcCCcEE
Confidence 986531 111344444554455544
No 62
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=52.18 E-value=1.9e+02 Score=26.41 Aligned_cols=104 Identities=12% Similarity=0.094 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeecCCC--CCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCee
Q 022889 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY--SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV 123 (290)
Q Consensus 46 ~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~--~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 123 (290)
.++.+ -+-.+-+.|.++|+++|++-..-.|.. ...+.+++++.+. +....+..++. .+...++.+++.+....
T Consensus 64 ~~s~e-~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~---~~~~~~~~~l~-~n~~die~A~~~g~~~v 138 (347)
T PLN02746 64 IVPTS-VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVR---NLEGARFPVLT-PNLKGFEAAIAAGAKEV 138 (347)
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHH---hccCCceeEEc-CCHHHHHHHHHcCcCEE
Confidence 45555 345566679999999999864444431 1112345555554 32334555554 48889999988664422
Q ss_pred Eeccccccc------CCCcc------hHHHHHHHHhCCceeee
Q 022889 124 SNQVQHSVV------DMRPQ------QKMAELCQLTGVKLITY 154 (290)
Q Consensus 124 ~~q~~~n~~------~~~~~------~~~~~~~~~~gi~via~ 154 (290)
.+-+.-|-. ++..+ .+++++++++|+.+.++
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 222122111 12211 26788999999988543
No 63
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=51.70 E-value=1e+02 Score=29.84 Aligned_cols=94 Identities=16% Similarity=0.194 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEeecC--CCCCccHHHHHHHHHHHHHcCcccEEE----ccC-----CCHHHHHHHHHc
Q 022889 50 SIVRESIDVSRRRMDVPCLDMLQFHWW--DYSNPGYLDALNHLTDLKEEGKIKTVA----LTN-----FDTERLRIILEN 118 (290)
Q Consensus 50 ~~i~~~~e~SL~~L~~d~iDl~~lH~~--~~~~~~~~e~~~~l~~l~~~G~ir~iG----vs~-----~~~~~l~~~~~~ 118 (290)
+...+-++..++..+-.+.+ -|-. .+....+.++++-+.+++++|+||.+. .+| +....+.+++..
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~v~GCd~~~~~~~yvt~~kelipr 436 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVVVVVGCDGLRSGRHYVTLFKELIPR 436 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEEEEeeCCCCCCCcccHHHHHHhccc
Confidence 56778888888888877777 2221 111122567788889999999999884 222 223333344332
Q ss_pred CCCeeEecccccccCCCcchHHHHHHHHhCCcee
Q 022889 119 GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLI 152 (290)
Q Consensus 119 ~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi 152 (290)
.+.+.-..+.- ..-..++.|...||+-+
T Consensus 437 --D~lVLt~GCgk----~~~~~~~vc~~lGIPpV 464 (576)
T COG1151 437 --DILVLTLGCGK----YRFNKADVGDILGIPRV 464 (576)
T ss_pred --ceEEEecccch----hhhhhhccccccCCCcc
Confidence 23332222221 11133488888888543
No 64
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=51.49 E-value=85 Score=27.25 Aligned_cols=67 Identities=19% Similarity=0.207 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHhhCCC--------------------------cccEEEeecCCCCCcc--HHHHHHHHHHHHHcCcc
Q 022889 48 TSSIVRESIDVSRRRMDVP--------------------------CLDMLQFHWWDYSNPG--YLDALNHLTDLKEEGKI 99 (290)
Q Consensus 48 ~~~~i~~~~e~SL~~L~~d--------------------------~iDl~~lH~~~~~~~~--~~e~~~~l~~l~~~G~i 99 (290)
+++. ++.++++|++.|.. ..|+++|..|....+. ..++++-|.+|+++|+
T Consensus 113 ~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~- 190 (254)
T COG1121 113 NKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK- 190 (254)
T ss_pred cHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC-
Confidence 4444 68899999999863 5688888888654431 3678999999999988
Q ss_pred cEEEccCCCHHHHHHHHH
Q 022889 100 KTVALTNFDTERLRIILE 117 (290)
Q Consensus 100 r~iGvs~~~~~~l~~~~~ 117 (290)
.|=+.+|+...+....+
T Consensus 191 -tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 191 -TVLMVTHDLGLVMAYFD 207 (254)
T ss_pred -EEEEEeCCcHHhHhhCC
Confidence 68888999888877654
No 65
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=50.98 E-value=1.1e+02 Score=29.08 Aligned_cols=73 Identities=10% Similarity=0.057 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEcc-CCCHHHHHHHHHcCCCeeEec
Q 022889 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 126 (290)
Q Consensus 48 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~q 126 (290)
+++.++... .+|.|++=+.+...-..... .+....+.+... ++.+||. |-+.+.+.++.+ ...++++|
T Consensus 266 ~~eda~~a~-----~~GaD~lGfIf~~~SpR~V~--~~~a~~i~~~l~---v~~VgVfv~~~~~~i~~i~~-~~~lD~vQ 334 (454)
T PRK09427 266 RPQDAKAAY-----DAGAVYGGLIFVEKSPRYVS--LEQAQEIIAAAP---LRYVGVFRNADIEDIVDIAK-QLSLAAVQ 334 (454)
T ss_pred CHHHHHHHH-----hCCCCEEeeEeCCCCCCCCC--HHHHHHHHHhCC---CCEEEEEeCCCHHHHHHHHH-HcCCCEEE
Confidence 345554443 48999998864322112222 333333333332 8889988 778888888877 45789999
Q ss_pred ccccc
Q 022889 127 VQHSV 131 (290)
Q Consensus 127 ~~~n~ 131 (290)
+.-+-
T Consensus 335 LHG~e 339 (454)
T PRK09427 335 LHGDE 339 (454)
T ss_pred eCCCC
Confidence 98753
No 66
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=50.81 E-value=1.5e+02 Score=25.22 Aligned_cols=82 Identities=16% Similarity=0.236 Sum_probs=51.1
Q ss_pred CCHHHHHHHHH-cCCCeeEec-c-cccccCCCc---chHHHHHHHHhCCceeeecccccccccccccCCCCCCCCCCCCC
Q 022889 107 FDTERLRIILE-NGIPVVSNQ-V-QHSVVDMRP---QQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPL 180 (290)
Q Consensus 107 ~~~~~l~~~~~-~~~~~~~~q-~-~~n~~~~~~---~~~~~~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~ 180 (290)
.++.+++.+.+ .|+.+..+. + +||.++..- ..+++++++..|..-+.+-|+..|-..+...
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~~v------------- 115 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGTAV------------- 115 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCccc-------------
Confidence 46778887776 465433332 2 255543211 2479999999999999999997764332211
Q ss_pred CCchhhHhhhhhhccCCchhHHHHHHHHHHHHHHhCC
Q 022889 181 NTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGV 217 (290)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~ 217 (290)
..+.....++.|+.|-+++|+
T Consensus 116 ----------------r~~~lv~AlkaLkpil~~~gi 136 (272)
T COG4130 116 ----------------RREDLVEALKALKPILDEYGI 136 (272)
T ss_pred ----------------chHHHHHHHHHhhHHHHHhCc
Confidence 113445556778888888775
No 67
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=50.80 E-value=1.6e+02 Score=25.27 Aligned_cols=108 Identities=11% Similarity=0.039 Sum_probs=70.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeE
Q 022889 45 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 124 (290)
Q Consensus 45 ~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 124 (290)
.+.+.+.-.+..+-+.+-+++++|-|=.+..+....+|.-|++++-+.|+++|-+- +=..+-++-..+++.+.| +.+
T Consensus 71 Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~akrL~d~G--caa 147 (247)
T PF05690_consen 71 GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEDAG--CAA 147 (247)
T ss_dssp T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE-EEEE-S-HHHHHHHHHTT---SE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHHCC--CCE
Confidence 47789998899999999999999999888887776677899999999999999863 334455666667777644 667
Q ss_pred ecccccccCCC----cchHHHHHHHHhCCceeeec
Q 022889 125 NQVQHSVVDMR----PQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 125 ~q~~~n~~~~~----~~~~~~~~~~~~gi~via~s 155 (290)
++.-=+++--. ....+--.+.+.++++|.-.
T Consensus 148 vMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDA 182 (247)
T PF05690_consen 148 VMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDA 182 (247)
T ss_dssp BEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES
T ss_pred EEecccccccCcCCCCHHHHHHHHHhcCCcEEEeC
Confidence 77666665211 11234445667799998855
No 68
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=50.75 E-value=2.3e+02 Score=27.07 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCcccEEEccC--C--CHHHHHH----HHHcC-CCee-EecccccccCCCcchHHHHHHHHhCCcee
Q 022889 83 YLDALNHLTDLKEEGKIKTVALTN--F--DTERLRI----ILENG-IPVV-SNQVQHSVVDMRPQQKMAELCQLTGVKLI 152 (290)
Q Consensus 83 ~~e~~~~l~~l~~~G~ir~iGvs~--~--~~~~l~~----~~~~~-~~~~-~~q~~~n~~~~~~~~~~~~~~~~~gi~vi 152 (290)
.+.+++.++.++++.-++.+-+.. + +...+.+ +.+.+ ..+. ..+...+.+.+ +.++++..++.|+..+
T Consensus 224 ~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~--d~ell~~l~~aG~~~v 301 (497)
T TIGR02026 224 PKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVR--DADILHLYRRAGLVHI 301 (497)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccC--CHHHHHHHHHhCCcEE
Confidence 678999999998875677776652 2 3333333 33333 3322 23444443322 3578999999998777
Q ss_pred eecc
Q 022889 153 TYGT 156 (290)
Q Consensus 153 a~sp 156 (290)
..+.
T Consensus 302 ~iGi 305 (497)
T TIGR02026 302 SLGT 305 (497)
T ss_pred EEcc
Confidence 7654
No 69
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=50.74 E-value=1.7e+02 Score=25.55 Aligned_cols=44 Identities=16% Similarity=0.071 Sum_probs=24.9
Q ss_pred HHHHhhCCCce-eeeecccCCcHHHHHHhhhhhcC-CCCHHHHHHHHH
Q 022889 224 VRYILDQPAVA-GSMIGVRLGLAEHIQDTNAIFML-SLDEDDVNSIQE 269 (290)
Q Consensus 224 l~~~l~~~~v~-~~l~g~~~~~~~~l~enl~a~~~-~L~~e~~~~l~~ 269 (290)
++.+.++-.+- .+=.|.++ ++|+++..++.+. -.-.+-++.|++
T Consensus 197 v~~vr~~~~~Pv~vGFGIs~--~e~~~~v~~~ADGVIVGSAiV~~i~~ 242 (265)
T COG0159 197 VKRVRKYTDVPVLVGFGISS--PEQAAQVAEAADGVIVGSAIVKIIEE 242 (265)
T ss_pred HHHHHHhcCCCeEEecCcCC--HHHHHHHHHhCCeEEEcHHHHHHHHh
Confidence 55555543222 23357777 9999998887654 444444444443
No 70
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=50.73 E-value=1.9e+02 Score=26.11 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=48.5
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEe--------e-cCCCCCccHHHHHHHHHHHHHcCcccEEEcc-CCCHHHHHH
Q 022889 45 VKMTSSIVRESIDVSRRRMDVPCLDMLQF--------H-WWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRI 114 (290)
Q Consensus 45 ~~~~~~~i~~~~e~SL~~L~~d~iDl~~l--------H-~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~ 114 (290)
+.++.+.+.+ +-+.|.+.|+|+|.+-.. . .+.. .++ .+.+..+.+....-++..+-+. ..+...++.
T Consensus 19 ~~f~~~~~~~-ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~-~~~-~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~ 95 (333)
T TIGR03217 19 HQFTIEQVRA-IAAALDEAGVDAIEVTHGDGLGGSSFNYGFSA-HTD-LEYIEAAADVVKRAKVAVLLLPGIGTVHDLKA 95 (333)
T ss_pred CcCCHHHHHH-HHHHHHHcCCCEEEEecCCCCCCccccCCCCC-CCh-HHHHHHHHHhCCCCEEEEEeccCccCHHHHHH
Confidence 3456665544 444578888888887421 1 1111 111 2222333222222222222111 124666777
Q ss_pred HHHcCCCeeEecccccccCCCcchHHHHHHHHhCCceee
Q 022889 115 ILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 115 ~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
+.+.++ +.+.+..+.-+-..-.+.++++++.|..+..
T Consensus 96 a~~~gv--d~iri~~~~~e~d~~~~~i~~ak~~G~~v~~ 132 (333)
T TIGR03217 96 AYDAGA--RTVRVATHCTEADVSEQHIGMARELGMDTVG 132 (333)
T ss_pred HHHCCC--CEEEEEeccchHHHHHHHHHHHHHcCCeEEE
Confidence 776553 3333333322112234677788888876554
No 71
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=50.45 E-value=24 Score=21.98 Aligned_cols=28 Identities=7% Similarity=-0.064 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhhCCCc
Q 022889 206 QTLKRIASKHGVSIPVVAVRYILDQPAV 233 (290)
Q Consensus 206 ~~l~~la~~~~~s~~q~al~~~l~~~~v 233 (290)
+.++.+.++.|+|..++|-+.-.+.+.+
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~gvs~~~v 32 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLAGVGLRFI 32 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHH
Confidence 5677777888888888886654443333
No 72
>PRK02866 cyanate hydratase; Validated
Probab=50.14 E-value=42 Score=26.48 Aligned_cols=64 Identities=23% Similarity=0.295 Sum_probs=46.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhhCCCceeeeecccCCcHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 022889 206 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVT 271 (290)
Q Consensus 206 ~~l~~la~~~~~s~~q~al~~~l~~~~v~~~l~g~~~~~~~~l~enl~a~~~~L~~e~~~~l~~~~ 271 (290)
+.+.+.-.+.|+|..++|=+=-++.-.+.+++-|..+-++++.+...+.+ .|+++....|...-
T Consensus 8 e~Ll~AK~~kGLTw~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kla~~L--gL~~~~~~~l~~~P 71 (147)
T PRK02866 8 EKILAAKKEKGLTWADIAEAIGLSEVWVTAALLGQMTLPAEEAEKVAELL--GLDEDAVALLQEVP 71 (147)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHHHHHh--CCCHHHHHHHhcCC
Confidence 55666666678888888876666666666777787776688887776654 88998877766543
No 73
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=49.85 E-value=1.9e+02 Score=25.86 Aligned_cols=90 Identities=9% Similarity=0.056 Sum_probs=51.9
Q ss_pred EEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccC---------CCHHHHHHHHHcCCCeeEecccccccCC--CcchH
Q 022889 71 LQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------FDTERLRIILENGIPVVSNQVQHSVVDM--RPQQK 139 (290)
Q Consensus 71 ~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~~~~~~~~q~~~n~~~~--~~~~~ 139 (290)
+.+=.-|+.......+.+.++.+++-|.+..+.+.+ .+.+.++.+.+.+.. ..+.+..|-... ..-..
T Consensus 140 VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i~l~~~h~~el~~~~~~ 218 (321)
T TIGR03822 140 VILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYVALHANHARELTAEARA 218 (321)
T ss_pred EEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEEEecCCChhhcCHHHHH
Confidence 444343433321356677777788888776555533 345556666665533 334444432110 11135
Q ss_pred HHHHHHHhCCceeeeccccccc
Q 022889 140 MAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 140 ~~~~~~~~gi~via~spl~~G~ 161 (290)
.++.+++.||.+...+++..|.
T Consensus 219 ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 219 ACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred HHHHHHHcCCEEEEEeeEeCCC
Confidence 6777889999999999987774
No 74
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=49.16 E-value=75 Score=28.45 Aligned_cols=88 Identities=19% Similarity=0.186 Sum_probs=59.9
Q ss_pred ccEEEeecCCCCCccHHHHHHHHHHHHHcCcc-cEEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHH
Q 022889 68 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 145 (290)
Q Consensus 68 iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~ 145 (290)
.++.++..|-. .+-++.+.++++.-.+ -..|=|.++...+..+++.+ -++++|+..+-+-. ..-..+...|+
T Consensus 198 ~~~~~iEeP~~-----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~-~~dvi~~d~~~~GGit~~~~~~~~A~ 271 (324)
T TIGR01928 198 YQLLYIEEPFK-----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELG-NVKVINIKPGRLGGLTEVQKAIETCR 271 (324)
T ss_pred CCCcEEECCCC-----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcC-CCCEEEeCcchhcCHHHHHHHHHHHH
Confidence 35566666542 2345667778776554 36677788999999988754 47888877665321 12247899999
Q ss_pred HhCCceeeeccccccc
Q 022889 146 LTGVKLITYGTVMGGL 161 (290)
Q Consensus 146 ~~gi~via~spl~~G~ 161 (290)
.+|+.++..+.+..|+
T Consensus 272 ~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 272 EHGAKVWIGGMLETGI 287 (324)
T ss_pred HcCCeEEEcceEcccH
Confidence 9999999877665553
No 75
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=48.08 E-value=2.6e+02 Score=26.90 Aligned_cols=94 Identities=9% Similarity=-0.057 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecccc
Q 022889 50 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQH 129 (290)
Q Consensus 50 ~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~ 129 (290)
+.+.+..++.+ .-|-|.||+=. ....+..+.+...++.+++... .-|.|-+++++.++++++.|.. -+|-+
T Consensus 165 ~~i~~~A~~~~-~~GADIIDIG~----~st~p~~~~v~~~V~~l~~~~~-~pISIDT~~~~v~eaAL~aGAd-iINsV-- 235 (499)
T TIGR00284 165 DGIEGLAARME-RDGADMVALGT----GSFDDDPDVVKEKVKTALDALD-SPVIADTPTLDELYEALKAGAS-GVIMP-- 235 (499)
T ss_pred HHHHHHHHHHH-HCCCCEEEECC----CcCCCcHHHHHHHHHHHHhhCC-CcEEEeCCCHHHHHHHHHcCCC-EEEEC--
Confidence 55555555444 66889999842 2222223456677777776632 2588999999999999987633 22221
Q ss_pred cccCCCcchHHHHHHHHhCCceeeec
Q 022889 130 SVVDMRPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 130 n~~~~~~~~~~~~~~~~~gi~via~s 155 (290)
+. .....+++.+++.|++++.+.
T Consensus 236 s~---~~~d~~~~l~a~~g~~vVlm~ 258 (499)
T TIGR00284 236 DV---ENAVELASEKKLPEDAFVVVP 258 (499)
T ss_pred Cc---cchhHHHHHHHHcCCeEEEEc
Confidence 11 122367888888888888874
No 76
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=47.97 E-value=1.4e+02 Score=25.69 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHHHhCCceeeeccccccc
Q 022889 87 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 87 ~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
++.+.++++.-.+- ..|=+-++.+.+..+++.+ .++++|+..+.+-. ..-..+...|+++|+.++..+.+.+|+
T Consensus 169 ~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~i 244 (265)
T cd03315 169 LEGRAALARATDTPIMADESAFTPHDAFRELALG-AADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGL 244 (265)
T ss_pred HHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhC-CCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchHH
Confidence 34455566554432 4444556777777777633 46777777655321 122478899999999999887665543
No 77
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=47.72 E-value=1.9e+02 Score=25.27 Aligned_cols=70 Identities=14% Similarity=0.160 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHhhCC-----C---------------------cccEEEeecCCCCCcc--HHHHHHHHHHHHHcC
Q 022889 46 KMTSSIVRESIDVSRRRMDV-----P---------------------CLDMLQFHWWDYSNPG--YLDALNHLTDLKEEG 97 (290)
Q Consensus 46 ~~~~~~i~~~~e~SL~~L~~-----d---------------------~iDl~~lH~~~~~~~~--~~e~~~~l~~l~~~G 97 (290)
+.....+++.++.-|+|+.+ + ..+|+.|..|....++ .+-+-++..+++++|
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence 55678899999999999975 2 2344555544332221 344567788999999
Q ss_pred cccEEEccCCCHHHHHHHHH
Q 022889 98 KIKTVALTNFDTERLRIILE 117 (290)
Q Consensus 98 ~ir~iGvs~~~~~~l~~~~~ 117 (290)
. .|=+|+|..+.++++++
T Consensus 181 a--tIifSsH~Me~vEeLCD 198 (300)
T COG4152 181 A--TIIFSSHRMEHVEELCD 198 (300)
T ss_pred C--EEEEecchHHHHHHHhh
Confidence 9 79999999999999987
No 78
>PRK06740 histidinol-phosphatase; Validated
Probab=47.49 E-value=2.2e+02 Score=25.74 Aligned_cols=99 Identities=11% Similarity=0.095 Sum_probs=57.2
Q ss_pred HHHHHHHHhhCCCcccEEEeecCCC---CCccH-------------HHHHHHHHHHHHcCcccEEEccC------CCH--
Q 022889 54 ESIDVSRRRMDVPCLDMLQFHWWDY---SNPGY-------------LDALNHLTDLKEEGKIKTVALTN------FDT-- 109 (290)
Q Consensus 54 ~~~e~SL~~L~~d~iDl~~lH~~~~---~~~~~-------------~e~~~~l~~l~~~G~ir~iGvs~------~~~-- 109 (290)
..+++.|+....||+ +..+|..+. ..+.. ..=++.+.++.+.|++..||=-. +..
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 345556666666776 677787541 11111 12346778888999988887432 111
Q ss_pred ----HHHHH----HHHcCCCeeEecc-cc--cccCCCcchHHHHHHHHhCCceee
Q 022889 110 ----ERLRI----ILENGIPVVSNQV-QH--SVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 110 ----~~l~~----~~~~~~~~~~~q~-~~--n~~~~~~~~~~~~~~~~~gi~via 153 (290)
..+++ +.+.+..+.+|-- .+ ..-+..+...++..|++.|+.++.
T Consensus 235 ~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~tl 289 (331)
T PRK06740 235 NEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPITL 289 (331)
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEEE
Confidence 23322 3335667777764 22 222233456899999999998654
No 79
>PRK13753 dihydropteroate synthase; Provisional
Probab=47.46 E-value=2e+02 Score=25.36 Aligned_cols=103 Identities=14% Similarity=0.130 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEE-eecCCCCCcc----HHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCC
Q 022889 47 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPG----YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 121 (290)
Q Consensus 47 ~~~~~i~~~~e~SL~~L~~d~iDl~~-lH~~~~~~~~----~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 121 (290)
++.+.+.+..++.+ .-|-|-||+=- -..|...... +.-+...++.+++.+. .|.|-++.++.++++++.|..
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGad 98 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGVG 98 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCCC
Confidence 56777777777765 55788888843 2335432111 2334477888887753 489999999999999987754
Q ss_pred eeEecccccccCCCcchHHHHHHHHhCCceeeecccc
Q 022889 122 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVM 158 (290)
Q Consensus 122 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~ 158 (290)
+. |=+ +-+ ....+++.+.+.+++++.+...+
T Consensus 99 iI-NDV--sg~---~d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 99 YL-NDI--QGF---PDPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred EE-EeC--CCC---CchHHHHHHHHcCCCEEEEecCC
Confidence 31 111 222 24578888999999999987653
No 80
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=46.70 E-value=2.4e+02 Score=26.09 Aligned_cols=105 Identities=13% Similarity=0.113 Sum_probs=63.0
Q ss_pred HHHHHHHHHHH-----------HhhCCCcccEEEeecCCCCC----ccHHHHHHHHHHHHHc-CcccEEEcc---CCCHH
Q 022889 50 SIVRESIDVSR-----------RRMDVPCLDMLQFHWWDYSN----PGYLDALNHLTDLKEE-GKIKTVALT---NFDTE 110 (290)
Q Consensus 50 ~~i~~~~e~SL-----------~~L~~d~iDl~~lH~~~~~~----~~~~e~~~~l~~l~~~-G~ir~iGvs---~~~~~ 110 (290)
+.+++.++.-. +.+ ..|++.||....+. ...++..++.++..+. +.---|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~---~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEF---GADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHh---CCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 55666666644 444 47888888753321 1134666666666443 332334433 45788
Q ss_pred HHHHHHHc--CCCeeEecccccccCCCcchHHHHHHHHhCCceeeeccccccc
Q 022889 111 RLRIILEN--GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 111 ~l~~~~~~--~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
.++++++. +-++-++-..... .-..+...|+++|..+++++|..-|.
T Consensus 205 VLeaaLe~~~G~kpLL~SAt~e~----Ny~~ia~lAk~yg~~Vvv~s~~Din~ 253 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASANLDL----DYEKIANAAKKYGHVVLSWTIMDINM 253 (389)
T ss_pred HHHHHHHHhCCCCcEEEecCchh----hHHHHHHHHHHhCCeEEEEcCCcHHH
Confidence 99988873 3344433222211 23588999999999999999876543
No 81
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=46.53 E-value=1.4e+02 Score=24.75 Aligned_cols=99 Identities=21% Similarity=0.248 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhCCCcccEEEeecCC-CCCccHHHHHHHHHHHHHcCcccEEEccCCCH--HHHHHHHHcCCCeeEeccc
Q 022889 52 VRESIDVSRRRMDVPCLDMLQFHWWD-YSNPGYLDALNHLTDLKEEGKIKTVALTNFDT--ERLRIILENGIPVVSNQVQ 128 (290)
Q Consensus 52 i~~~~e~SL~~L~~d~iDl~~lH~~~-~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~~q~~ 128 (290)
....+.+.+++.+...--+ .+--.. ........+...+..|++.|- .+++.++.. ..+..+.. .+++.+-+.
T Consensus 101 ~~~~l~~~l~~~~~~~~~l-vlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~~--l~~d~iKld 175 (241)
T smart00052 101 LVPRVLELLEETGLPPQRL-ELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLKR--LPVDLLKID 175 (241)
T ss_pred HHHHHHHHHHHcCCCHHHE-EEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHHh--CCCCeEEEC
Confidence 4566667777766542122 221111 111213455588999999997 577777643 34444443 467777777
Q ss_pred ccccCCC--------cchHHHHHHHHhCCceeeec
Q 022889 129 HSVVDMR--------PQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 129 ~n~~~~~--------~~~~~~~~~~~~gi~via~s 155 (290)
.+++... .-..++..|+..|+.+++-.
T Consensus 176 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 210 (241)
T smart00052 176 KSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEG 210 (241)
T ss_pred HHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEec
Confidence 6655321 12467889999999999854
No 82
>PRK07945 hypothetical protein; Provisional
Probab=44.84 E-value=2.4e+02 Score=25.49 Aligned_cols=81 Identities=12% Similarity=0.091 Sum_probs=50.5
Q ss_pred CcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccC---------------CCH-HHHHHHHHcCCCeeEecccc
Q 022889 66 PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------------FDT-ERLRIILENGIPVVSNQVQH 129 (290)
Q Consensus 66 d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~---------------~~~-~~l~~~~~~~~~~~~~q~~~ 129 (290)
||+ +..+|+.... . ..+..+.|.++.+.|++.-+|--. +.. +.++.+.+.+..+.+|--..
T Consensus 192 D~v-IgSvH~~~~~-~-~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~~lEINt~~~ 268 (335)
T PRK07945 192 DVV-VASVHSKLRM-D-AAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGTAVEINSRPE 268 (335)
T ss_pred CEE-EEEeecCCCC-C-HHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCCEEEEeCCCC
Confidence 444 5566876432 2 456678888888888888887421 122 23344445566677765433
Q ss_pred cccCCCcchHHHHHHHHhCCcee
Q 022889 130 SVVDMRPQQKMAELCQLTGVKLI 152 (290)
Q Consensus 130 n~~~~~~~~~~~~~~~~~gi~vi 152 (290)
. ..+...++..|++.|+.++
T Consensus 269 r---~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 269 R---RDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred C---CCChHHHHHHHHHcCCeEE
Confidence 2 3456689999999999753
No 83
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=44.78 E-value=48 Score=20.41 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHhhCCCceeeeecccCCcHHHHHHhhhhhcC
Q 022889 208 LKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML 257 (290)
Q Consensus 208 l~~la~~~~~s~~q~al~~~l~~~~v~~~l~g~~~~~~~~l~enl~a~~~ 257 (290)
+++||+..|+|++-+.- +|..+.- +...+ .+++.+.++.+++
T Consensus 2 i~dIA~~agvS~~TVSr--~ln~~~~----vs~~t--r~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSR--VLNGPPR----VSEET--RERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHHH--HHTTCSS----STHHH--HHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHHH--HHhCCCC----CCHHH--HHHHHHHHHHHCC
Confidence 67899999999976554 4444432 46666 8888887776654
No 84
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=43.37 E-value=1.2e+02 Score=27.61 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHHHhCCceeeecccccc
Q 022889 87 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 87 ~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl~~G 160 (290)
++.+.+|+++..|. +.|=+-++.+.+..+++.+ -++++|+...-+-. ..-..+...|+++|+.++..+....|
T Consensus 228 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~-~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~ 302 (365)
T cd03318 228 LDGLARLRSRNRVPIMADESVSGPADAFELARRG-AADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESS 302 (365)
T ss_pred HHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhC-CCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhH
Confidence 56666777765543 5566667788888887744 36667776544311 12247888999999998876544443
No 85
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=43.17 E-value=1.7e+02 Score=23.34 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=53.2
Q ss_pred EEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc--C-CCeeEecccccccC---CCcchHHHHHH
Q 022889 71 LQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--G-IPVVSNQVQHSVVD---MRPQQKMAELC 144 (290)
Q Consensus 71 ~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~-~~~~~~q~~~n~~~---~~~~~~~~~~~ 144 (290)
.|+..|...+ .+++++.-.+=-+++-|++|=|.+.+......+++. + .++.++--.+-.-. +..+.++-+..
T Consensus 2 ~yf~~pG~eN--T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L 79 (186)
T COG1751 2 VYFEKPGKEN--TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKEL 79 (186)
T ss_pred ccccCCcccc--hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHH
Confidence 3455565443 367777666666677789998887666655555541 2 34444433333321 22346889999
Q ss_pred HHhCCceeeeccccc
Q 022889 145 QLTGVKLITYGTVMG 159 (290)
Q Consensus 145 ~~~gi~via~spl~~ 159 (290)
+++|..++.-|-.-.
T Consensus 80 ~erGa~v~~~sHalS 94 (186)
T COG1751 80 KERGAKVLTQSHALS 94 (186)
T ss_pred HHcCceeeeehhhhh
Confidence 999999888664433
No 86
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=42.19 E-value=1.1e+02 Score=27.32 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=21.6
Q ss_pred ecccCCcHHHHHHhhhhhcC-CCCHHHHHHHH
Q 022889 238 IGVRLGLAEHIQDTNAIFML-SLDEDDVNSIQ 268 (290)
Q Consensus 238 ~g~~~~~~~~l~enl~a~~~-~L~~e~~~~l~ 268 (290)
.|..+ ++.+...++++.. -+++++++.|-
T Consensus 270 ~gled--~~~l~~l~~~L~~~G~~e~~i~~i~ 299 (313)
T COG2355 270 DGLED--VGKLPNLTAALIERGYSEEEIEKIA 299 (313)
T ss_pred hhhcC--hhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 46666 7788888888765 49999887764
No 87
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=42.16 E-value=2.6e+02 Score=25.18 Aligned_cols=93 Identities=11% Similarity=0.090 Sum_probs=53.5
Q ss_pred HHhhCCCcccEEEee-cCCCCCccHHHHHHHHHHHHHc-CcccEEEccCC---CHHHHHHHHHc--CCCeeEeccccccc
Q 022889 60 RRRMDVPCLDMLQFH-WWDYSNPGYLDALNHLTDLKEE-GKIKTVALTNF---DTERLRIILEN--GIPVVSNQVQHSVV 132 (290)
Q Consensus 60 L~~L~~d~iDl~~lH-~~~~~~~~~~e~~~~l~~l~~~-G~ir~iGvs~~---~~~~l~~~~~~--~~~~~~~q~~~n~~ 132 (290)
-+.+|.|+||+-+.- .|+......++....++...+. +.=-.|..|.. +++.++++++. +-++-++-...
T Consensus 85 ~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~--- 161 (319)
T PRK04452 85 VEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEE--- 161 (319)
T ss_pred HHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCH---
Confidence 357888888885432 2332121134444444444332 22233665533 68888888873 33343333221
Q ss_pred CCCcchHHHHHHHHhCCceeeeccc
Q 022889 133 DMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 133 ~~~~~~~~~~~~~~~gi~via~spl 157 (290)
..-+.+.+.|++.|..+++.+|.
T Consensus 162 --en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 162 --DNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred --HHHHHHHHHHHHhCCeEEEEcHH
Confidence 12357999999999999999865
No 88
>PRK02399 hypothetical protein; Provisional
Probab=41.31 E-value=77 Score=29.46 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=27.3
Q ss_pred HHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEE
Q 022889 55 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV 102 (290)
Q Consensus 55 ~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~i 102 (290)
+++...++|.-...|.+.+|.-...- ++||+|.++|.+..+
T Consensus 200 ~v~~~~~~Le~~GyEvlVFHATG~GG-------raME~Li~~G~~~gV 240 (406)
T PRK02399 200 CVQAAREELEARGYEVLVFHATGTGG-------RAMEKLIDSGLIAGV 240 (406)
T ss_pred HHHHHHHHHHhCCCeEEEEcCCCCch-------HHHHHHHHcCCceEE
Confidence 33444444443447999999876432 479999999998554
No 89
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=41.28 E-value=2.4e+02 Score=24.44 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEE-eecCCCCCcc----HHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCC
Q 022889 47 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPG----YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 121 (290)
Q Consensus 47 ~~~~~i~~~~e~SL~~L~~d~iDl~~-lH~~~~~~~~----~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 121 (290)
++.+.+.+..++.+ .-|-|.||+=. --+|+....+ ++.+...++.+++.-.+ -+.+-++.++.++++++.+.+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~-plSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDV-LISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-cEEEeCCCHHHHHHHHHhCCC
Confidence 56677766666665 56889999842 2234432211 23344456666665333 378889999999999987632
Q ss_pred eeEecccccccCCCcchHHHHHHHHhCCceeeecc
Q 022889 122 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 122 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 156 (290)
.+|- .+.... ..++++.+++.|+.++.+..
T Consensus 99 -iINd--isg~~~--~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 99 -IIND--VSGGSD--DPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred -EEEe--CCCCCC--ChHHHHHHHHcCCCEEEECC
Confidence 2222 222211 15889999999999999654
No 90
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=41.01 E-value=40 Score=22.27 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHh
Q 022889 206 QTLKRIASKHGVSIPVVAVRYIL 228 (290)
Q Consensus 206 ~~l~~la~~~~~s~~q~al~~~l 228 (290)
.-+.+||+.+|+++.++|..|+.
T Consensus 14 ~~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 14 LSFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred CcHHHHHHHhCCCHHHHHHHHHH
Confidence 35678999999999999999985
No 91
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=40.83 E-value=1.1e+02 Score=25.52 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=51.1
Q ss_pred cccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEeccccc-ccCCCcchHHHHHHH
Q 022889 67 CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHS-VVDMRPQQKMAELCQ 145 (290)
Q Consensus 67 ~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n-~~~~~~~~~~~~~~~ 145 (290)
-..+..+.+.. -.+. ..+|.+.|-. .+-+.-.+.+.+.++++ +....++-+..+ .-.......++++|+
T Consensus 22 ~~~V~~l~R~~-----~~~~---~~~l~~~g~~-vv~~d~~~~~~l~~al~-g~d~v~~~~~~~~~~~~~~~~~li~Aa~ 91 (233)
T PF05368_consen 22 GFSVRALVRDP-----SSDR---AQQLQALGAE-VVEADYDDPESLVAALK-GVDAVFSVTPPSHPSELEQQKNLIDAAK 91 (233)
T ss_dssp TGCEEEEESSS-----HHHH---HHHHHHTTTE-EEES-TT-HHHHHHHHT-TCSEEEEESSCSCCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEecc-----chhh---hhhhhcccce-EeecccCCHHHHHHHHc-CCceEEeecCcchhhhhhhhhhHHHhhh
Confidence 35666666654 1222 4456666764 55666667888888887 655444444433 211223457999999
Q ss_pred HhCCceeeecccccc
Q 022889 146 LTGVKLITYGTVMGG 160 (290)
Q Consensus 146 ~~gi~via~spl~~G 160 (290)
+.||..+.+|.++..
T Consensus 92 ~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 92 AAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHT-SEEEESEESSG
T ss_pred ccccceEEEEEeccc
Confidence 999999999988665
No 92
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=40.79 E-value=2.8e+02 Score=25.08 Aligned_cols=74 Identities=12% Similarity=0.036 Sum_probs=59.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcC
Q 022889 45 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 119 (290)
Q Consensus 45 ~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~ 119 (290)
.+++++...+-.+-+.+-+++++|-|=.+.......++..+++++.+.|+++|..-. =+++-++...+++.+.+
T Consensus 145 g~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~-~yc~~d~~~a~~l~~~g 218 (326)
T PRK11840 145 GCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVM-VYCSDDPIAAKRLEDAG 218 (326)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHhcC
Confidence 478888888888888888999999998887766666778999999999999999642 45555777777776644
No 93
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=40.73 E-value=1.7e+02 Score=27.35 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHc------CcccEEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHHHhCCceeeeccc
Q 022889 85 DALNHLTDLKEE------GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 85 e~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl 157 (290)
+-++.+.+|++. +.--..+=|-++.+.+..+++.+ -.+++|+..+-+-. ..-.++..+|+.+||.++..+..
T Consensus 279 ~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~-a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 279 AQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAK-AGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred hhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhC-CCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 345666666655 33344555667788888888754 46777777664311 12357899999999999997765
No 94
>TIGR00035 asp_race aspartate racemase.
Probab=40.67 E-value=2e+02 Score=24.26 Aligned_cols=69 Identities=10% Similarity=0.085 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCc-----------cHHHHHHHHHHHHHcCcccEEEccCCCHHH-HHHH
Q 022889 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP-----------GYLDALNHLTDLKEEGKIKTVALTNFDTER-LRII 115 (290)
Q Consensus 48 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~-----------~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~-l~~~ 115 (290)
+.+.+++-++..=.+.+-+|++.+.+++|+.... ....+.+.++.|.+.| +..|.++..+... +.++
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~~~~l 93 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKFAEDI 93 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHHHHHH
Confidence 5566777777777789999999999999864211 1345667777777765 7889888776655 4444
Q ss_pred HH
Q 022889 116 LE 117 (290)
Q Consensus 116 ~~ 117 (290)
.+
T Consensus 94 ~~ 95 (229)
T TIGR00035 94 QK 95 (229)
T ss_pred HH
Confidence 43
No 95
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=40.66 E-value=1.6e+02 Score=23.05 Aligned_cols=50 Identities=12% Similarity=0.170 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHhhC--CCcccEEEeecCCCCCccHHHHHHHHHHHHHcC
Q 022889 47 MTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 97 (290)
Q Consensus 47 ~~~~~i~~~~e~SL~~L~--~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G 97 (290)
...+.|++.+.++++... ....|++++...... .+++++...|..+.++-
T Consensus 60 V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~-~~f~~L~~~l~~~~~~~ 111 (138)
T PRK00730 60 HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ-PDFLKLLQDFLQQIPEA 111 (138)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC-CCHHHHHHHHHHHHHHH
Confidence 456778888888887763 357899999998876 44888888888877763
No 96
>PRK15108 biotin synthase; Provisional
Probab=40.52 E-value=2.8e+02 Score=25.11 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccC--CCHHHHHHHHHcCCC---
Q 022889 47 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN--FDTERLRIILENGIP--- 121 (290)
Q Consensus 47 ~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~--~~~~~l~~~~~~~~~--- 121 (290)
.+++.|.+.++. ...+|...+- ....+.++....++.+.+.+..+++.|. .+.+|+ .+.+.+.++.+.|..
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~-i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFC-MGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEE-EEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 688888888875 5578988873 3333222222226777777888887775 344554 678888888886643
Q ss_pred --eeEecccccccCC-C-cc--hHHHHHHHHhCCceeeecccccc
Q 022889 122 --VVSNQVQHSVVDM-R-PQ--QKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 122 --~~~~q~~~n~~~~-~-~~--~~~~~~~~~~gi~via~spl~~G 160 (290)
++...-.|.-+.. . .+ -+.+..+++.|+.+-+.-.+|-|
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 2222111221211 1 11 25677888889877666666554
No 97
>PRK10200 putative racemase; Provisional
Probab=39.71 E-value=2.2e+02 Score=24.08 Aligned_cols=68 Identities=13% Similarity=0.053 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeecCCCCC-----------ccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHH
Q 022889 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-----------PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 116 (290)
Q Consensus 48 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~-----------~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 116 (290)
+.+..++-++..-.+.+-|+++.+.+|.++... .....+.+.++.|.+.| +..|.+...+.......+
T Consensus 15 T~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~~~~l 93 (230)
T PRK10200 15 TIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKVADAI 93 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHHHHHH
Confidence 566777777788888999999999999975321 11456778888888887 688888866655443333
No 98
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.58 E-value=1.7e+02 Score=24.80 Aligned_cols=91 Identities=9% Similarity=0.065 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHH-HHHHcCcccEEEccC-CCHHHHHHHHHcCCCeeEe
Q 022889 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLT-DLKEEGKIKTVALTN-FDTERLRIILENGIPVVSN 125 (290)
Q Consensus 48 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~-~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~ 125 (290)
+++...+-+ +.|-+-|...+-+ =+-+ +.-.+.++.|. +..++.-=-.+|+.+ .+.++++.+++.|-.|.+
T Consensus 25 ~~~~a~~~~-~al~~gGi~~iEi---T~~t---p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiV- 96 (222)
T PRK07114 25 DVEVAKKVI-KACYDGGARVFEF---TNRG---DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIV- 96 (222)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEE---eCCC---CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEE-
Confidence 445444443 4555667654444 2221 22344444443 222332223699987 478999999987765543
Q ss_pred cccccccCCCcchHHHHHHHHhCCceee
Q 022889 126 QVQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 126 q~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
.+....+++++|+++||.++.
T Consensus 97 -------sP~~~~~v~~~~~~~~i~~iP 117 (222)
T PRK07114 97 -------TPLFNPDIAKVCNRRKVPYSP 117 (222)
T ss_pred -------CCCCCHHHHHHHHHcCCCEeC
Confidence 234466999999999998886
No 99
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=39.56 E-value=2.2e+02 Score=26.65 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEe-ecCCC----------CCccHH---HHHHHH-HHHHHcCcccEEEccCCCH
Q 022889 47 MTSSIVRESIDVSRRRMDVPCLDMLQF-HWWDY----------SNPGYL---DALNHL-TDLKEEGKIKTVALTNFDT 109 (290)
Q Consensus 47 ~~~~~i~~~~e~SL~~L~~d~iDl~~l-H~~~~----------~~~~~~---e~~~~l-~~l~~~G~ir~iGvs~~~~ 109 (290)
.+.+.+.+.+++.+ .|+.|+|.+|.+ |-|.. ..++.+ +.++.. +.|.+.|- +.+|+|||..
T Consensus 201 QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 201 QTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 58889999999888 688999999987 43311 122222 333333 44566777 8999999976
No 100
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=39.21 E-value=2.6e+02 Score=24.28 Aligned_cols=102 Identities=12% Similarity=0.063 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCc-ccEEEccCCCHHHHHHHHHcCCCeeE
Q 022889 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 124 (290)
Q Consensus 46 ~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~ 124 (290)
.++.+...+-+ +.|.++|++.|.+-. |.. .++.+++.+.+.+.++ .+-.+....+...++.+.+.+.+..-
T Consensus 18 ~~s~~~k~~i~-~~L~~~Gv~~IEvG~---P~~----~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (262)
T cd07948 18 FFDTEDKIEIA-KALDAFGVDYIELTS---PAA----SPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVD 89 (262)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEEEC---CCC----CHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEE
Confidence 45666554444 459999988888763 433 2334445555554444 34455567788889999887654322
Q ss_pred ecccccc------cCCCcc------hHHHHHHHHhCCceeeec
Q 022889 125 NQVQHSV------VDMRPQ------QKMAELCQLTGVKLITYG 155 (290)
Q Consensus 125 ~q~~~n~------~~~~~~------~~~~~~~~~~gi~via~s 155 (290)
+-+..|- +.+..+ .+.+.++++.|+.+...-
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 2222221 112211 256788889997755543
No 101
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=38.84 E-value=1.5e+02 Score=27.06 Aligned_cols=74 Identities=11% Similarity=0.070 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHHHhCCceeeeccccccc
Q 022889 87 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 87 ~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
++.+.+|++...+. ..|=|-++...+..+++.+ -++++|+...-+-. ..-..+...|+.+|+.++..+.+.+|+
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~-~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~i 302 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKAS-AADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGPI 302 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhC-CCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhHH
Confidence 55666677765543 6677778888888887743 46777776654311 112468889999999998776554443
No 102
>PRK09726 antitoxin HipB; Provisional
Probab=38.82 E-value=54 Score=23.05 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhhCCCceeeeecccCCcHHHHHHhhhhhcCCCC
Q 022889 205 LQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLD 260 (290)
Q Consensus 205 ~~~l~~la~~~~~s~~q~al~~~l~~~~v~~~l~g~~~~~~~~l~enl~a~~~~L~ 260 (290)
...++.+.++.|+|..++|-+--.+++.++...-|.+..+.+.+...+.+++..++
T Consensus 14 ~~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~l~~ia~~lgv~~~ 69 (88)
T PRK09726 14 ANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMT 69 (88)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCcc
Confidence 36778888888999888888776666666555555544446777777777766543
No 103
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=38.65 E-value=2.6e+02 Score=24.06 Aligned_cols=99 Identities=9% Similarity=0.061 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcC-cccEEEccCCCHHHHHHHHHcCCCeeE
Q 022889 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 124 (290)
Q Consensus 46 ~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~ 124 (290)
.++.+...+ +-+.|.++|+++|.+-+ |.. . +.-++.++.+.+.+ .++..+....+...++.+.+.+.+..-
T Consensus 16 ~~~~~~k~~-i~~~L~~~Gv~~iE~g~---p~~--~--~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~ 87 (259)
T cd07939 16 AFSREEKLA-IARALDEAGVDEIEVGI---PAM--G--EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVH 87 (259)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEec---CCC--C--HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEE
Confidence 455565444 45559999999999852 321 1 22245566666643 366777776778888888876644322
Q ss_pred eccccccc------CCCcc------hHHHHHHHHhCCcee
Q 022889 125 NQVQHSVV------DMRPQ------QKMAELCQLTGVKLI 152 (290)
Q Consensus 125 ~q~~~n~~------~~~~~------~~~~~~~~~~gi~vi 152 (290)
+-+..|.. ++..+ ...+.+|++.|+.+.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 22222211 11111 257789999998654
No 104
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=38.54 E-value=1.2e+02 Score=26.32 Aligned_cols=17 Identities=12% Similarity=0.319 Sum_probs=14.8
Q ss_pred HHHHHHHHhCCceeeec
Q 022889 139 KMAELCQLTGVKLITYG 155 (290)
Q Consensus 139 ~~~~~~~~~gi~via~s 155 (290)
.++.+|++++|.+|+-.
T Consensus 137 ~Li~~c~~~ki~vIss~ 153 (263)
T COG1179 137 ALIAYCRRNKIPVISSM 153 (263)
T ss_pred HHHHHHHHcCCCEEeec
Confidence 68999999999998854
No 105
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=37.97 E-value=3.2e+02 Score=24.96 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=55.5
Q ss_pred EEeecCCCCC----------ccHHHHHHHHHHHHH-cCc---ccEEEcc--CCCHHHHHHHHH--cCCCeeEeccccccc
Q 022889 71 LQFHWWDYSN----------PGYLDALNHLTDLKE-EGK---IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVV 132 (290)
Q Consensus 71 ~~lH~~~~~~----------~~~~e~~~~l~~l~~-~G~---ir~iGvs--~~~~~~l~~~~~--~~~~~~~~q~~~n~~ 132 (290)
+-||.++... ..++++++++.++.+ .|. |+++=+. |.+.+.+..+.+ .+.++.++-++||.+
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 6689886221 126888888887654 443 3444443 344566655544 256678888899986
Q ss_pred CC----Ccch----HHHHHHHHhCCceeeeccccc
Q 022889 133 DM----RPQQ----KMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 133 ~~----~~~~----~~~~~~~~~gi~via~spl~~ 159 (290)
.. .+.. ...++.+++|+.+......|.
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 42 1111 345667778999999887754
No 106
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=37.36 E-value=2.2e+02 Score=25.89 Aligned_cols=84 Identities=12% Similarity=0.062 Sum_probs=58.6
Q ss_pred ccEEEeecCCCCCccHHHHHHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHH
Q 022889 68 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 145 (290)
Q Consensus 68 iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~ 145 (290)
++++++..|-+. +-++.+.+|++...+. ..|=|-++...+..+++.+ -++++|+....+-. ..-..+...|+
T Consensus 189 ~~l~~iEeP~~~-----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~-a~di~~~d~~~~GGit~~~~ia~~A~ 262 (361)
T cd03322 189 YRLFWMEDPTPA-----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQER-LIDYIRTTVSHAGGITPARKIADLAS 262 (361)
T ss_pred cCCCEEECCCCc-----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhC-CCCEEecCccccCCHHHHHHHHHHHH
Confidence 466677766532 2356677788876654 6777778899999988754 47888888765321 12347899999
Q ss_pred HhCCceeeeccc
Q 022889 146 LTGVKLITYGTV 157 (290)
Q Consensus 146 ~~gi~via~spl 157 (290)
++|+.++.++..
T Consensus 263 ~~gi~~~~h~~~ 274 (361)
T cd03322 263 LYGVRTGWHGPT 274 (361)
T ss_pred HcCCeeeccCCC
Confidence 999999876543
No 107
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=36.73 E-value=1.7e+02 Score=22.06 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHhhCC--CcccEEEeecCCCCCccHHHHHHHHHHHHHc
Q 022889 47 MTSSIVRESIDVSRRRMDV--PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 96 (290)
Q Consensus 47 ~~~~~i~~~~e~SL~~L~~--d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~ 96 (290)
...+.|++.+.+.++.... +..|++++..+.....+..++.+.|..|.+.
T Consensus 59 V~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 59 VERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred hhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 3567788888888865542 3579999999876655577777777777654
No 108
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=36.10 E-value=1.9e+02 Score=24.60 Aligned_cols=70 Identities=11% Similarity=0.171 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCC-c-------------------------ccEEEeecCCCCCc--cHHHHHHHHHHHHHcC
Q 022889 46 KMTSSIVRESIDVSRRRMDVP-C-------------------------LDMLQFHWWDYSNP--GYLDALNHLTDLKEEG 97 (290)
Q Consensus 46 ~~~~~~i~~~~e~SL~~L~~d-~-------------------------iDl~~lH~~~~~~~--~~~e~~~~l~~l~~~G 97 (290)
+.+...+.+.+++.-++|+.+ | .+++.+..|....+ ....+-+.+.+++.+|
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC
Confidence 455566777777777777752 2 23444444433222 1357788999999999
Q ss_pred cccEEEccCCCHHHHHHHHH
Q 022889 98 KIKTVALTNFDTERLRIILE 117 (290)
Q Consensus 98 ~ir~iGvs~~~~~~l~~~~~ 117 (290)
+ .+=+|+|..+.++++.+
T Consensus 184 r--~viFSSH~m~EvealCD 201 (245)
T COG4555 184 R--AVIFSSHIMQEVEALCD 201 (245)
T ss_pred c--EEEEecccHHHHHHhhh
Confidence 8 68899999999999987
No 109
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=35.84 E-value=1.7e+02 Score=22.09 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHhhCC---CcccEEEeecCCCCCccHHHHHHHHHHHHHc
Q 022889 47 MTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 96 (290)
Q Consensus 47 ~~~~~i~~~~e~SL~~L~~---d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~ 96 (290)
...+.|++.+.+.++.+.. ...|++++-.+.....+..++.+.|..|.+.
T Consensus 62 V~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 62 VVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred hhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 4567788888888877643 3689999999887665688898888888765
No 110
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=35.76 E-value=1.9e+02 Score=26.13 Aligned_cols=87 Identities=20% Similarity=0.160 Sum_probs=55.3
Q ss_pred ccEEEeecCCCCCccHHHHHHHHHHHHHcCc-ccEEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHH
Q 022889 68 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 145 (290)
Q Consensus 68 iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~ 145 (290)
.++.++..|-. .+-+..+.++++.-. =-+.|=|-++.+.+..+++.+ -++++|+..+.+-. ..-..+...|+
T Consensus 203 ~~i~~iEeP~~-----~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~-~~d~~~ik~~~~GGit~~~~i~~~A~ 276 (354)
T cd03317 203 YGLLMIEQPLA-----ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELG-ACKIINIKPGRVGGLTEALKIHDLCQ 276 (354)
T ss_pred CCccEEECCCC-----hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcC-CCCEEEecccccCCHHHHHHHHHHHH
Confidence 35555655542 223555666666533 246677778888898888754 46777877654321 12247889999
Q ss_pred HhCCceeeecccccc
Q 022889 146 LTGVKLITYGTVMGG 160 (290)
Q Consensus 146 ~~gi~via~spl~~G 160 (290)
.+|+.++..+....|
T Consensus 277 ~~gi~~~~g~~~es~ 291 (354)
T cd03317 277 EHGIPVWCGGMLESG 291 (354)
T ss_pred HcCCcEEecCcccch
Confidence 999999876555443
No 111
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=35.49 E-value=35 Score=26.35 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=20.2
Q ss_pred CcchHHHHHHHHhCCceeeecccc
Q 022889 135 RPQQKMAELCQLTGVKLITYGTVM 158 (290)
Q Consensus 135 ~~~~~~~~~~~~~gi~via~spl~ 158 (290)
....++++.|+++||.+++|-.+.
T Consensus 44 Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 44 DLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHHCCCEEEEEEeee
Confidence 334689999999999999998775
No 112
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=35.24 E-value=2.4e+02 Score=25.43 Aligned_cols=69 Identities=23% Similarity=0.302 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHHHhCCceeeecc
Q 022889 87 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 87 ~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~sp 156 (290)
++.+..+++.-.+- ..|=|-++.+.+..+++.+ .++++|+....+-. ..-..+...|+++|+.++..+.
T Consensus 229 ~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 229 LEGLARLRQATSVPIAAGENLYTRWEFRDLLEAG-AVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHhCCCCEEeccccccHHHHHHHHHhC-CCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCC
Confidence 45566666654443 4444556788888888744 47777777655321 1224789999999999887764
No 113
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=35.24 E-value=1.3e+02 Score=24.28 Aligned_cols=63 Identities=24% Similarity=0.283 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhCCCc----ccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHH
Q 022889 52 VRESIDVSRRRMDVPC----LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE 117 (290)
Q Consensus 52 i~~~~e~SL~~L~~d~----iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~ 117 (290)
.+..++..++++|.+. ++.+.-.+... .. +.++.+.|+.|++.| ++-.-+||.+...+...++
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~-~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~ 127 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAYLRL-PP-HPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVK 127 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-CC-CCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHH
Confidence 4566777777887652 11111111111 12 466778889999988 4455578878777776665
No 114
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=35.22 E-value=2.1e+02 Score=22.00 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHhhCC----CcccEEEeecCCCCCccHHHHHHHHHHHHH
Q 022889 47 MTSSIVRESIDVSRRRMDV----PCLDMLQFHWWDYSNPGYLDALNHLTDLKE 95 (290)
Q Consensus 47 ~~~~~i~~~~e~SL~~L~~----d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~ 95 (290)
.....|++.+.++++.+.. ...|++++-.+.....++.++.+.|..+.+
T Consensus 61 V~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 61 VERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred hHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 4567788888888887654 458999999988765557888888877665
No 115
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=35.19 E-value=2.3e+02 Score=25.48 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHHHhCCceeeec
Q 022889 86 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 86 ~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~s 155 (290)
-++.+.+|++...|- +.|=|.++...+..+++.+ -++++|+..+-.-. ..-..+...|+.+|+.++.++
T Consensus 210 d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~-a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 210 DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGR-AVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcC-CCCEEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 356677777776654 6666777888988888754 47888887665321 223578999999999988764
No 116
>PRK10060 RNase II stability modulator; Provisional
Probab=34.74 E-value=3.7e+02 Score=26.72 Aligned_cols=100 Identities=13% Similarity=0.171 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhhCCCcccEEEeecCCC-CCccHHHHHHHHHHHHHcCcccEEEccCCC--HHHHHHHHHcCCCeeEecc
Q 022889 51 IVRESIDVSRRRMDVPCLDMLQFHWWDY-SNPGYLDALNHLTDLKEEGKIKTVALTNFD--TERLRIILENGIPVVSNQV 127 (290)
Q Consensus 51 ~i~~~~e~SL~~L~~d~iDl~~lH~~~~-~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~--~~~l~~~~~~~~~~~~~q~ 127 (290)
.+...+.+.|++.+.+. ..+.+--... ...+...+...+.+|++.|- .+++..|. ...+..+.. .+++.+-+
T Consensus 508 ~~~~~l~~~l~~~~~~~-~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~--~ialDdfGtg~ssl~~L~~--l~~d~iKi 582 (663)
T PRK10060 508 TIFTALKQALQELNFEY-CPIDVELTESCLIENEELALSVIQQFSQLGA--QVHLDDFGTGYSSLSQLAR--FPIDAIKL 582 (663)
T ss_pred cHHHHHHHHHHHHCcCc-ceEEEEECCchhhcCHHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHh--CCCCEEEE
Confidence 35666667777766532 2222222221 11225678889999999998 67777765 455555554 57788777
Q ss_pred cccccCCC--------cchHHHHHHHHhCCceeeec
Q 022889 128 QHSVVDMR--------PQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 128 ~~n~~~~~--------~~~~~~~~~~~~gi~via~s 155 (290)
.-+++..- .-..++..|+..|+.++|=.
T Consensus 583 D~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAeG 618 (663)
T PRK10060 583 DQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEG 618 (663)
T ss_pred CHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEec
Confidence 76665321 12468999999999999844
No 117
>PRK05588 histidinol-phosphatase; Provisional
Probab=34.59 E-value=2.9e+02 Score=23.55 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhCCCcccEEEeecCCCCC---------ccHHHH----HHHHHHHHH-cCcccEEEccC-------CC---
Q 022889 53 RESIDVSRRRMDVPCLDMLQFHWWDYSN---------PGYLDA----LNHLTDLKE-EGKIKTVALTN-------FD--- 108 (290)
Q Consensus 53 ~~~~e~SL~~L~~d~iDl~~lH~~~~~~---------~~~~e~----~~~l~~l~~-~G~ir~iGvs~-------~~--- 108 (290)
...+++.|++...||+ +..+|+.+... .+.+++ ++.+.++++ .|++.-+|=-. +.
T Consensus 80 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~ 158 (255)
T PRK05588 80 IEENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGHIDYISRYAKYEDKE 158 (255)
T ss_pred HHHHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccCHhHHHHcCcccccc
Confidence 3455666776666766 67889854211 112333 366677776 46555554211 00
Q ss_pred ----------HHHHHHHHHcCCCeeEecccccc-cCCCcchHHHHHHHHhCCceeeecc
Q 022889 109 ----------TERLRIILENGIPVVSNQVQHSV-VDMRPQQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 109 ----------~~~l~~~~~~~~~~~~~q~~~n~-~~~~~~~~~~~~~~~~gi~via~sp 156 (290)
.+.++.+.+.+..+.+|--.+.. ....+...++..|++.|+.+++.+.
T Consensus 159 ~~~~~~~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~i~lgS 217 (255)
T PRK05588 159 IYYDEFKEIIDEILKVLIEKEKVLEINTRRLDDKRSVENLVKIYKRFYELGGKYITLGS 217 (255)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCEEEEECcccCCCCCCCCHHHHHHHHHHcCCcEEEEEC
Confidence 11223333456667766533221 1122334678889999888655443
No 118
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=34.41 E-value=3.6e+02 Score=24.95 Aligned_cols=70 Identities=9% Similarity=0.042 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHHHhCCceeeeccc
Q 022889 87 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 87 ~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl 157 (290)
++.+.+|++.-.+. ..|=|-++...+..+++.+ -++++|+...-+-. ..-..+...|+.+|+.++.++..
T Consensus 246 ~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~-a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 246 QEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQ-LIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcC-CCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 56677787775553 6677778899999998854 47888887665321 12347889999999999987543
No 119
>PRK08609 hypothetical protein; Provisional
Probab=34.00 E-value=2.9e+02 Score=27.07 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=43.4
Q ss_pred CcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccC------CC-----HHHHHHH-HHcCCCeeEecccccccC
Q 022889 66 PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN------FD-----TERLRII-LENGIPVVSNQVQHSVVD 133 (290)
Q Consensus 66 d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~------~~-----~~~l~~~-~~~~~~~~~~q~~~n~~~ 133 (290)
||+ +.-+|++.. .+ .+++.+.+.++.+.|.+.-||=-. .. .+.+.++ .+.+..+.+|-. .+.
T Consensus 430 D~v-I~SvH~~~~-~~-~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~lEINa~---~~r 503 (570)
T PRK08609 430 DYV-IAAIHSSFS-QS-EEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTALELNAN---PNR 503 (570)
T ss_pred CEE-EEEeecCCC-CC-HHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCEEEEcCC---ccc
Confidence 444 445565432 22 466777888888888777666443 11 1223333 334544444433 222
Q ss_pred CCcchHHHHHHHHhCCce
Q 022889 134 MRPQQKMAELCQLTGVKL 151 (290)
Q Consensus 134 ~~~~~~~~~~~~~~gi~v 151 (290)
......++..|++.|+.+
T Consensus 504 ~~~~~~~~~~~~e~Gv~i 521 (570)
T PRK08609 504 LDLSAEHLKKAQEAGVKL 521 (570)
T ss_pred cCccHHHHHHHHHcCCEE
Confidence 233457888888888864
No 120
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=33.93 E-value=93 Score=23.63 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHhhCCCceeeeecccCCcHHHHHHhhhhh
Q 022889 216 GVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 255 (290)
Q Consensus 216 ~~s~~q~al~~~l~~~~v~~~l~g~~~~~~~~l~enl~a~ 255 (290)
..|-.+.||.++...+.-..++.|+..+..+|.-.|+..+
T Consensus 69 D~TD~e~Al~~~~~~~~~~i~v~Ga~GgR~DH~lanl~~l 108 (123)
T PF04263_consen 69 DYTDLEKALEYAIEQGPDEIIVLGALGGRFDHTLANLNLL 108 (123)
T ss_dssp TS-HHHHHHHHHHHTTTSEEEEES-SSSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHHHHH
Confidence 3577889999999988888888999988899988887765
No 121
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=33.81 E-value=1.6e+02 Score=27.40 Aligned_cols=94 Identities=12% Similarity=0.183 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCcccEEEccCCCHHHHHHHHH----cCCCeeEecccccccCCCcchHHHHHHHHh--CCceeeecccc
Q 022889 85 DALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGIPVVSNQVQHSVVDMRPQQKMAELCQLT--GVKLITYGTVM 158 (290)
Q Consensus 85 e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~----~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~--gi~via~spl~ 158 (290)
.+++++.+..++++ ++...+.+.+...++ .|+.|..+-...| .+.++.+++. =++++++.
T Consensus 122 PiYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi~-------~~~~~~~~~~~R~~giVSRG--- 187 (431)
T PRK13352 122 PIYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTIHCGVT-------RETLERLKKSGRIMGIVSRG--- 187 (431)
T ss_pred hHHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEEccchh-------HHHHHHHHhcCCccCeecCC---
Confidence 46777777766554 667788877666554 4655555444443 4677777764 35666653
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhHhhhhhhccCCchhHHHHHHHHHHHHHHhCCC
Q 022889 159 GGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVS 218 (290)
Q Consensus 159 ~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s 218 (290)
|.+++.=.... ...+.+-+-++.|-+|+++|.++
T Consensus 188 Gs~~~~WM~~n--------------------------~~ENPlye~fD~lLeI~~~yDVt 221 (431)
T PRK13352 188 GSFLAAWMLHN--------------------------NKENPLYEHFDYLLEILKEYDVT 221 (431)
T ss_pred HHHHHHHHHHc--------------------------CCcCchHHHHHHHHHHHHHhCee
Confidence 44544322221 12233444468899999998653
No 122
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=33.51 E-value=81 Score=18.07 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHH
Q 022889 204 LLQTLKRIASKHGVSIPVVAV 224 (290)
Q Consensus 204 ~~~~l~~la~~~~~s~~q~al 224 (290)
..+.+.++|++.|+|.+++.-
T Consensus 10 ~~~~l~~~a~~~g~s~s~~ir 30 (39)
T PF01402_consen 10 LYERLDELAKELGRSRSELIR 30 (39)
T ss_dssp HHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHH
Confidence 348999999999999887543
No 123
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=33.31 E-value=2.7e+02 Score=28.00 Aligned_cols=99 Identities=12% Similarity=0.201 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhCCCcccEEEeecCCCC-CccHHHHHHHHHHHHHcCcccEEEccCCC--HHHHHHHHHcCCCeeEeccc
Q 022889 52 VRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFD--TERLRIILENGIPVVSNQVQ 128 (290)
Q Consensus 52 i~~~~e~SL~~L~~d~iDl~~lH~~~~~-~~~~~e~~~~l~~l~~~G~ir~iGvs~~~--~~~l~~~~~~~~~~~~~q~~ 128 (290)
+...+...|+..+...- -+.+--.... ......+...+..|++.|- .+++.+|. ...+..+.. .+++++-+.
T Consensus 646 ~~~~l~~~l~~~~~~~~-~l~~ei~e~~~~~~~~~~~~~l~~l~~~G~--~i~ld~fg~~~~~~~~l~~--l~~d~iKid 720 (799)
T PRK11359 646 LPNQVSDAMQAWGIDGH-QLTVEITESMMMEHDTEIFKRIQILRDMGV--GLSVDDFGTGFSGLSRLVS--LPVTEIKID 720 (799)
T ss_pred HHHHHHHHHHHhCcChH-hEEEEEcCchhhcCHHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHhh--CCCCEEEEC
Confidence 44555555655554321 1222111111 1225778889999999998 78888764 344444443 567777777
Q ss_pred ccccCCC--------cchHHHHHHHHhCCceeeec
Q 022889 129 HSVVDMR--------PQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 129 ~n~~~~~--------~~~~~~~~~~~~gi~via~s 155 (290)
-+++..- .-..++..|++.||.+|+-.
T Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~via~g 755 (799)
T PRK11359 721 KSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEG 755 (799)
T ss_pred HHHHhhcccChhHHHHHHHHHHHHHHCCCeEEEEc
Confidence 6554321 12468889999999999854
No 124
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=33.28 E-value=84 Score=24.21 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=8.4
Q ss_pred HHHHHHHHHHcCcccEEEcc
Q 022889 86 ALNHLTDLKEEGKIKTVALT 105 (290)
Q Consensus 86 ~~~~l~~l~~~G~ir~iGvs 105 (290)
.+..|.+..++|++..|=|.
T Consensus 56 ~l~~ll~~~~~g~vd~vvv~ 75 (140)
T cd03770 56 GFNRMIEDIEAGKIDIVIVK 75 (140)
T ss_pred HHHHHHHHHHcCCCCEEEEe
Confidence 33333334444544444333
No 125
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=33.25 E-value=63 Score=28.69 Aligned_cols=48 Identities=15% Similarity=-0.026 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhCCCcc--cEEEeecCCCCCccHHHHHHHHHHHHHcCcccE
Q 022889 50 SIVRESIDVSRRRMDVPCL--DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKT 101 (290)
Q Consensus 50 ~~i~~~~e~SL~~L~~d~i--Dl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~ 101 (290)
+...+.+.+.+++||+.+= ..+.-+.+. . ...+.+.+.+|.++|.|-.
T Consensus 82 ~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~---~-~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 82 EEMSGEHKEDFRRLGISYDWSDEYITTEPE---Y-SKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHhCccccCCCCeECCCHH---H-HHHHHHHHHHHHHCCCEEe
Confidence 3467788999999998422 233333332 2 6789999999999999843
No 126
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=33.02 E-value=2.3e+02 Score=26.62 Aligned_cols=89 Identities=11% Similarity=0.137 Sum_probs=55.1
Q ss_pred HHhhCCCcccEEEeecCCC-CCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHH---c----CCCeeEecccccc
Q 022889 60 RRRMDVPCLDMLQFHWWDY-SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE---N----GIPVVSNQVQHSV 131 (290)
Q Consensus 60 L~~L~~d~iDl~~lH~~~~-~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~---~----~~~~~~~q~~~n~ 131 (290)
.+.||++|. ++..|-. ... ..++ ...+-+.|-+..+|..+.++++++..+. . +-|+-+|-+ .++
T Consensus 7 ~~~lgiryP---ii~gpMa~Gis-s~eL---VaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~ 78 (418)
T cd04742 7 KEDYGLRYA---YVAGAMARGIA-SAEL---VVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSP 78 (418)
T ss_pred HHHhCCCcc---EECCcccCCCC-CHHH---HHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCC
Confidence 355676654 3334432 111 2333 3355678999999999999988877664 1 335666654 333
Q ss_pred cCCCcchHHHHHHHHhCCceeeecc
Q 022889 132 VDMRPQQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 132 ~~~~~~~~~~~~~~~~gi~via~sp 156 (290)
-+...+..+++.+.++|+.++..+.
T Consensus 79 ~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 79 DEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CCchhHHHHHHHHHHcCCCEEEecc
Confidence 2222245789999999998877654
No 127
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=32.82 E-value=1.4e+02 Score=23.98 Aligned_cols=67 Identities=24% Similarity=0.234 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHcC-cccEEEccCCC--HHHHHHHHHcCCCeeEecccccccCCCcchHHHHHHHHhCCceeeec
Q 022889 83 YLDALNHLTDLKEEG-KIKTVALTNFD--TERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 83 ~~e~~~~l~~l~~~G-~ir~iGvs~~~--~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 155 (290)
..+++.+|.+++..| +|..+|..|.. ...+..++. ..+.+..|+- ...-...+..+++.|+.++.-+
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~----~~i~~~~~~~--~~e~~~~i~~~~~~G~~viVGg 132 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLG----VDIKIYPYDS--EEEIEAAIKQAKAEGVDVIVGG 132 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-----EEEEEEESS--HHHHHHHHHHHHHTT--EEEES
T ss_pred HhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhC----CceEEEEECC--HHHHHHHHHHHHHcCCcEEECC
Confidence 468899999998776 66666766653 456666653 2444444432 2222467888999999888744
No 128
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.80 E-value=2.2e+02 Score=23.92 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccC-CCHHHHHHHHHcCCCeeEec
Q 022889 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 126 (290)
Q Consensus 48 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~q 126 (290)
+.+...+-++ .|..-|.+.|-+ -+- ..+.++.+++++++.-=..||..+ .+.++++.+.+.|-.|.+.
T Consensus 25 ~~~~a~~i~~-al~~~Gi~~iEi---tl~------~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs- 93 (212)
T PRK05718 25 KLEDAVPLAK-ALVAGGLPVLEV---TLR------TPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS- 93 (212)
T ss_pred CHHHHHHHHH-HHHHcCCCEEEE---ecC------CccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC-
Confidence 4555544444 344555544444 322 123555666666553335688886 4678888888877655542
Q ss_pred ccccccCCCcchHHHHHHHHhCCcee
Q 022889 127 VQHSVVDMRPQQKMAELCQLTGVKLI 152 (290)
Q Consensus 127 ~~~n~~~~~~~~~~~~~~~~~gi~vi 152 (290)
+....++++.|++.+|.++
T Consensus 94 -------P~~~~~vi~~a~~~~i~~i 112 (212)
T PRK05718 94 -------PGLTPPLLKAAQEGPIPLI 112 (212)
T ss_pred -------CCCCHHHHHHHHHcCCCEe
Confidence 2334589999999999888
No 129
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=32.56 E-value=2.7e+02 Score=25.91 Aligned_cols=83 Identities=13% Similarity=0.148 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc-CCCeeEecccccccCCCcc-hHHHHHHHHhCCceeeecccccc
Q 022889 83 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 83 ~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~via~spl~~G 160 (290)
+..+...++.+.++.-|....+-..+.+.+.+++.. ..+..++..+-|++.+-.+ ..+.+.|+++|+.++.=++++.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 567888888888888888777777777666666653 5678999999999866544 57888999999888888888877
Q ss_pred ccccc
Q 022889 161 LLSEK 165 (290)
Q Consensus 161 ~L~~~ 165 (290)
.+...
T Consensus 192 ~~q~P 196 (396)
T COG0626 192 VLQRP 196 (396)
T ss_pred cccCh
Confidence 65543
No 130
>PRK13796 GTPase YqeH; Provisional
Probab=32.51 E-value=3.4e+02 Score=24.80 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHH
Q 022889 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 116 (290)
Q Consensus 48 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 116 (290)
..+.+.+-++...+.+|....|++++-.-.. .. +.++++.+.++.+.+.+--+|.+|...+.+-..+
T Consensus 114 ~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g-~g-I~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 114 KKNKVKNWLRQEAKELGLRPVDVVLISAQKG-HG-IDELLEAIEKYREGRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred CHHHHHHHHHHHHHhcCCCcCcEEEEECCCC-CC-HHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHH
Confidence 4556666666667777765557777755432 23 7899999988888888999999999987765544
No 131
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=32.44 E-value=1.5e+02 Score=26.28 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHHHhCCceeeecccccc
Q 022889 87 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 87 ~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl~~G 160 (290)
++.+.+|++...|- ..|=+-++.+.+..+++.+ -++++|+..+.+-. ..-..+..+|+++|+.++..+-+..|
T Consensus 217 ~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~-~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 217 DDGLAYLRDKSPLPIMADESCFSAADAARLAGGG-AYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcC-CCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 44455566655443 3344456677777776633 46666666554311 11247899999999999987766544
No 132
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=32.42 E-value=1.2e+02 Score=25.59 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=35.7
Q ss_pred HhCCCHHHHHHHHHhhCCCceeeeecccCCcHHHHHHhhhhhc
Q 022889 214 KHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFM 256 (290)
Q Consensus 214 ~~~~s~~q~al~~~l~~~~v~~~l~g~~~~~~~~l~enl~a~~ 256 (290)
+...|-.++|+.|++.++....++.|+.-+..+|+-.|+.-+-
T Consensus 74 eKd~TD~elAl~~a~e~g~d~i~i~Ga~GGR~DH~l~nl~ll~ 116 (212)
T COG1564 74 EKDSTDLELALDEALERGADEIVILGALGGRLDHALANLFLLL 116 (212)
T ss_pred hhccchHHHHHHHHHHcCCCEEEEEecCCChHHHHHHHHHHHH
Confidence 3456889999999999998788888888877899888877653
No 133
>PRK10551 phage resistance protein; Provisional
Probab=32.39 E-value=1.7e+02 Score=28.13 Aligned_cols=100 Identities=9% Similarity=0.120 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhhCCCcccEEE-eecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCC--HHHHHHHHHcCCCeeEec
Q 022889 50 SIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD--TERLRIILENGIPVVSNQ 126 (290)
Q Consensus 50 ~~i~~~~e~SL~~L~~d~iDl~~-lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~--~~~l~~~~~~~~~~~~~q 126 (290)
..+...+.+.++.++.+..-+.+ +...... . ..+....++.|++.|- .|.+.+|. ...+..+.. .+++.+-
T Consensus 364 ~~f~~~l~~~l~~~~~~~~~LvlEItE~~~~-~-~~~~~~~l~~Lr~~G~--~ialDDFGtg~ssl~~L~~--l~vD~lK 437 (518)
T PRK10551 364 DSFKADVQRLLASLPADHFQIVLEITERDMV-Q-EEEATKLFAWLHSQGI--EIAIDDFGTGHSALIYLER--FTLDYLK 437 (518)
T ss_pred chHHHHHHHHHHhCCCCcceEEEEEechHhc-C-CHHHHHHHHHHHHCCC--EEEEECCCCCchhHHHHHh--CCCCEEE
Confidence 44667788888888766433322 2222211 1 2446688899999998 67777664 344444443 4677777
Q ss_pred ccccccCCCc--------chHHHHHHHHhCCceeeec
Q 022889 127 VQHSVVDMRP--------QQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 127 ~~~n~~~~~~--------~~~~~~~~~~~gi~via~s 155 (290)
+.-+++..-. -..++..|++.|+.++|=+
T Consensus 438 ID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAEG 474 (518)
T PRK10551 438 IDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEG 474 (518)
T ss_pred ECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 7665553211 1368899999999999843
No 134
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=32.36 E-value=3.4e+02 Score=23.57 Aligned_cols=104 Identities=10% Similarity=0.045 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCC-----ccHHHHHHHHHHHHHcCcccEEEccCC---CHHHHHHHHH
Q 022889 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-----PGYLDALNHLTDLKEEGKIKTVALTNF---DTERLRIILE 117 (290)
Q Consensus 46 ~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~-----~~~~e~~~~l~~l~~~G~ir~iGvs~~---~~~~l~~~~~ 117 (290)
.++.+.. ..+-+.|.++|+|+|.+-+........ ..-.+.++.+.++.+ +..+-.+++.. +.+.+..+.+
T Consensus 16 ~f~~~~~-~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 16 DFGDEFV-KAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred cCCHHHH-HHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhc
Confidence 4566654 455566999999999997654432110 001455555555443 24555665543 3566666666
Q ss_pred cCCCeeEecccccccCCCcchHHHHHHHHhCCceee
Q 022889 118 NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 118 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
.++. .+.+.+..-+...-.+.+++++++|+.+..
T Consensus 94 ~gv~--~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 127 (266)
T cd07944 94 SVVD--MIRVAFHKHEFDEALPLIKAIKEKGYEVFF 127 (266)
T ss_pred CCcC--EEEEecccccHHHHHHHHHHHHHCCCeEEE
Confidence 5543 333333221112234788899999986554
No 135
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=32.34 E-value=3.8e+02 Score=24.15 Aligned_cols=72 Identities=7% Similarity=0.105 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCcc-cEEEccCCCHHHHHHHHHcCCCeeEecccccccCCCcchHHHHHHHHhCCceeeeccccccc
Q 022889 87 LNHLTDLKEEGKI-KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 87 ~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
++.+.++++.-.+ -+.|=|-++.+.+..+++.+ -.+++|+..+.+ ..-.+.++.|+.+||.++..+.+..++
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~-a~dvi~ik~~~~--GGit~~lkiA~~~gi~v~v~s~~es~i 245 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAG-AADVAVLKVAPL--GGVRAALDIAEQIGLPVVVSSALDTSV 245 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcC-CCCEEEeCcchh--CCHHHHHHHHHHcCCcEEEeCCcccHH
Confidence 3445555554322 34455556777777777643 477777777654 222477889999999999888776553
No 136
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=32.34 E-value=1e+02 Score=24.43 Aligned_cols=63 Identities=24% Similarity=0.266 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhhCCCceeeeecccCCcHHHHHHhhhhhcCCCCHHHHHHHHHH
Q 022889 206 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEV 270 (290)
Q Consensus 206 ~~l~~la~~~~~s~~q~al~~~l~~~~v~~~l~g~~~~~~~~l~enl~a~~~~L~~e~~~~l~~~ 270 (290)
+.|.+.-.+.|+|..++|=.=-++.-.+++++-|-.+-++++.+...+.+ .|+++....|...
T Consensus 11 ~~Ll~AK~~KGLTwe~IAe~iG~sevwvaaa~lGQ~~ls~e~A~kla~lL--gL~~e~~~~l~~~ 73 (150)
T TIGR00673 11 DALLESKKKKGLTFADIADGLGLAEVFVAAALYGQAAAPADEARLVGAKL--DLDEDSILELQMA 73 (150)
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHhCCCCCCHHHHHHHHHHh--CcCHHHHHHHhcC
Confidence 56666666778888888877666666666777787766678877776665 7888887777643
No 137
>PLN02428 lipoic acid synthase
Probab=32.29 E-value=3.5e+02 Score=24.74 Aligned_cols=99 Identities=19% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHhhCCCcccEEEeecCCC----------CCccHHHHHHHHHHHHHc--CcccE----EEccCCCHHHHHHHHH--c
Q 022889 57 DVSRRRMDVPCLDMLQFHWWDY----------SNPGYLDALNHLTDLKEE--GKIKT----VALTNFDTERLRIILE--N 118 (290)
Q Consensus 57 e~SL~~L~~d~iDl~~lH~~~~----------~~~~~~e~~~~l~~l~~~--G~ir~----iGvs~~~~~~l~~~~~--~ 118 (290)
++.|++|.-.-+|. +-|+++. .....++.++.++.+++. |.... +|+ .-+.+.+.+.+. .
T Consensus 195 ~elL~~L~eAG~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~Lr 272 (349)
T PLN02428 195 LGAVETVATSGLDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDLR 272 (349)
T ss_pred HHHHHHHHHcCCCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHHH
Q ss_pred CCCeeEecc-cc-----------cccCCCcchHHHHHHHHhCCceeeeccc
Q 022889 119 GIPVVSNQV-QH-----------SVVDMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 119 ~~~~~~~q~-~~-----------n~~~~~~~~~~~~~~~~~gi~via~spl 157 (290)
...++.+.+ +| ..+.+.....+-+++.+.|...++.+||
T Consensus 273 elgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~ 323 (349)
T PLN02428 273 AAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPL 323 (349)
T ss_pred HcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCc
No 138
>PRK14017 galactonate dehydratase; Provisional
Probab=32.07 E-value=3.8e+02 Score=24.55 Aligned_cols=70 Identities=19% Similarity=0.159 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHHHhCCceeeeccc
Q 022889 87 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 87 ~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl 157 (290)
++.+.+|++...+- ..|=|.++...+..+++.+ -++++|+..+.+-. ..-..+...|+.+||.++.++..
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~-a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAG-GVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcC-CCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 46677777776553 5666778888888888754 47778877665311 22347899999999999987653
No 139
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=31.95 E-value=1.7e+02 Score=27.33 Aligned_cols=40 Identities=25% Similarity=0.388 Sum_probs=26.1
Q ss_pred HHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEE
Q 022889 56 IDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV 102 (290)
Q Consensus 56 ~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~i 102 (290)
+++..++|.-.-.+.+.+|.-... . .+||+|.++|.+..+
T Consensus 200 V~~~~~~Le~~G~Ev~VFHAtG~G-G------~aME~Li~~G~~~~V 239 (403)
T PF06792_consen 200 VDAIRERLEEEGYEVLVFHATGTG-G------RAMERLIREGQFDGV 239 (403)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCc-h------HHHHHHHHcCCcEEE
Confidence 333333443334788999987642 1 479999999997544
No 140
>PLN02489 homocysteine S-methyltransferase
Probab=31.79 E-value=3.9e+02 Score=24.14 Aligned_cols=103 Identities=13% Similarity=0.062 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcC--cccEEEccC---------CCHHHHHHH
Q 022889 47 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG--KIKTVALTN---------FDTERLRII 115 (290)
Q Consensus 47 ~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G--~ir~iGvs~---------~~~~~l~~~ 115 (290)
.+.+.+.+.....++.|--.-+|++.+--.. .+.|+..+++.+++.+ +--.+.++. .+...+...
T Consensus 160 ~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~----~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~ 235 (335)
T PLN02489 160 VTLEKLKDFHRRRLQVLAEAGPDLIAFETIP----NKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASI 235 (335)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEeccC----ChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHH
Confidence 5678888888888887754669999997654 2677777777777665 444455543 122233323
Q ss_pred HHcCCCeeEecccccccCCCcchHHHHHHHHh-CCceeeec
Q 022889 116 LENGIPVVSNQVQHSVVDMRPQQKMAELCQLT-GVKLITYG 155 (290)
Q Consensus 116 ~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~-gi~via~s 155 (290)
+.....++++-+++. ....-..+++..+.. ++.+++|-
T Consensus 236 ~~~~~~~~~iGiNC~--~p~~~~~~l~~l~~~~~~pl~vyP 274 (335)
T PLN02489 236 ADSCKKVVAVGINCT--PPRFIHGLILSIRKVTSKPIVVYP 274 (335)
T ss_pred HHhcCCceEEEecCC--CHHHHHHHHHHHHhhcCCcEEEEC
Confidence 222224667777664 222223555555444 66666664
No 141
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=31.63 E-value=1.5e+02 Score=27.22 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=13.3
Q ss_pred hHHHHHHHHhCCceeeec
Q 022889 138 QKMAELCQLTGVKLITYG 155 (290)
Q Consensus 138 ~~~~~~~~~~gi~via~s 155 (290)
+.+++.|+++||.+|.-+
T Consensus 61 ~~~L~~~~~~gIkvI~Na 78 (362)
T PF07287_consen 61 RPLLPAAAEKGIKVITNA 78 (362)
T ss_pred HHHHHHHHhCCCCEEEeC
Confidence 467778888888887753
No 142
>PRK12928 lipoyl synthase; Provisional
Probab=31.49 E-value=3.7e+02 Score=23.75 Aligned_cols=74 Identities=9% Similarity=0.173 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEcc--CC---CHHHHHHHHHcC
Q 022889 45 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT--NF---DTERLRIILENG 119 (290)
Q Consensus 45 ~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs--~~---~~~~l~~~~~~~ 119 (290)
...+++.+.+.++ .+..+|..+|-+--.+..|..........+.++.+++..--..|.+- .+ ..+.+..+.+.+
T Consensus 85 ~~~~~eei~~~a~-~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag 163 (290)
T PRK12928 85 MPLDPDEPERVAE-AVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAK 163 (290)
T ss_pred CCCCHHHHHHHHH-HHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcC
Confidence 4578899998888 57789999988877776442222133445555556664321133322 22 345677776654
No 143
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=31.38 E-value=21 Score=22.31 Aligned_cols=47 Identities=11% Similarity=0.136 Sum_probs=19.1
Q ss_pred HHHHHhCCCHHHHHHHHHhhCCCceeeeecccCCcHHHHHHhhhhhc
Q 022889 210 RIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFM 256 (290)
Q Consensus 210 ~la~~~~~s~~q~al~~~l~~~~v~~~l~g~~~~~~~~l~enl~a~~ 256 (290)
++.++.|+|..++|-+--.+...++..+-|-+..+.+.+....++++
T Consensus 3 ~~r~~~gls~~~la~~~gis~~~i~~~~~g~~~~~~~~~~~ia~~l~ 49 (55)
T PF01381_consen 3 ELRKEKGLSQKELAEKLGISRSTISRIENGKRNPSLDTLKKIAKALG 49 (55)
T ss_dssp HHHHHTTS-HHHHHHHHTS-HHHHHHHHTTSSTSBHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHhCCCcchhHHHhcCCCCCCHHHHHHHHHHHC
Confidence 33444555555555443333333322333332223555555555444
No 144
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.33 E-value=4.1e+02 Score=24.22 Aligned_cols=77 Identities=18% Similarity=0.078 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHc-Cc---ccEEEcc--CCCHHHHHHHHH--cCCCeeEecccccccCCCc-----c---hHHHHHHHH
Q 022889 83 YLDALNHLTDLKEE-GK---IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVVDMRP-----Q---QKMAELCQL 146 (290)
Q Consensus 83 ~~e~~~~l~~l~~~-G~---ir~iGvs--~~~~~~l~~~~~--~~~~~~~~q~~~n~~~~~~-----~---~~~~~~~~~ 146 (290)
++++++++.+..+. |+ +-++=+. |.+.+.+.++.+ .+.++.++-++||++.... . ....+..+.
T Consensus 225 l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L~~ 304 (344)
T PRK14464 225 PEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYLHR 304 (344)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHHHH
Confidence 77888888777553 42 1233232 567777777665 3678899999999875321 1 245667788
Q ss_pred hCCceeeeccccc
Q 022889 147 TGVKLITYGTVMG 159 (290)
Q Consensus 147 ~gi~via~spl~~ 159 (290)
+||.+......|.
T Consensus 305 ~gi~~tiR~~~G~ 317 (344)
T PRK14464 305 RGVLTKVRNSAGQ 317 (344)
T ss_pred CCceEEEECCCCC
Confidence 9999999888764
No 145
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=31.33 E-value=4e+02 Score=24.15 Aligned_cols=124 Identities=9% Similarity=0.030 Sum_probs=67.2
Q ss_pred ceeeeeeeccc--cCCCCCCCCHHHHHHHHHHHHHhhCCCc---ccEEEeecCCCCCccHHH---HHHHHHHHHH--cCc
Q 022889 29 EFLDKVRGLTK--WVPPPVKMTSSIVRESIDVSRRRMDVPC---LDMLQFHWWDYSNPGYLD---ALNHLTDLKE--EGK 98 (290)
Q Consensus 29 ~~~~~~~~~~k--~~~~~~~~~~~~i~~~~e~SL~~L~~d~---iDl~~lH~~~~~~~~~~e---~~~~l~~l~~--~G~ 98 (290)
++.....+... ........+.+.+.+.+.+.++.....+ |.+-+|=......+ .++ +++....++. .+.
T Consensus 84 V~Y~Eir~~P~~~~~~~~~g~~~~~v~~av~~~~~~~~~~~~~~i~v~lI~~~~R~~~-~e~~~e~~~~a~~~~~~~~~~ 162 (345)
T cd01321 84 VQYVELRSSFSPLYDLDGREYDYEETVQLLEEVVEKFKKTHPDFIGLKIIYATLRNFN-DSEIKESMEQCLNLKKKFPDF 162 (345)
T ss_pred CEEEEEeecchHHHHccCCCCCHHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCC-HHHHHHHHHHHHHHHHhCCCe
Confidence 55555555432 1111235788888888887777765444 45434444444333 344 4444444433 345
Q ss_pred ccEEEccCCC-----HH----HHHHHHHcC--CCeeEecccccc---------cC---CC-----------cchHHHHHH
Q 022889 99 IKTVALTNFD-----TE----RLRIILENG--IPVVSNQVQHSV---------VD---MR-----------PQQKMAELC 144 (290)
Q Consensus 99 ir~iGvs~~~-----~~----~l~~~~~~~--~~~~~~q~~~n~---------~~---~~-----------~~~~~~~~~ 144 (290)
|-.||+++.. .. .+..+.+.+ +++.+.-.+... .+ -. ....+++++
T Consensus 163 VvGidL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al~lg~~RIGHG~~~~~dp~ll~~l 242 (345)
T cd01321 163 IAGFDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDALLLNTKRIGHGFALPKHPLLMDLV 242 (345)
T ss_pred EEEEecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHHHhCCCcCccccccCcCHHHHHHH
Confidence 7788887643 22 233444456 677776665531 00 00 124788888
Q ss_pred HHhCCceee
Q 022889 145 QLTGVKLIT 153 (290)
Q Consensus 145 ~~~gi~via 153 (290)
++++|.+-.
T Consensus 243 ~~~~I~lEv 251 (345)
T cd01321 243 KKKNIAIEV 251 (345)
T ss_pred HHcCCeEEE
Confidence 888886643
No 146
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.06 E-value=3.7e+02 Score=24.74 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=51.7
Q ss_pred cHHHHHHHHHH-HHHcC---cccEEEcc--CCCHHHHHHHHH--cCCCeeEecccccccCCCc--------chHHHHHHH
Q 022889 82 GYLDALNHLTD-LKEEG---KIKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVVDMRP--------QQKMAELCQ 145 (290)
Q Consensus 82 ~~~e~~~~l~~-l~~~G---~ir~iGvs--~~~~~~l~~~~~--~~~~~~~~q~~~n~~~~~~--------~~~~~~~~~ 145 (290)
+++++++++.+ +.+.| +|+++=+. |.+.+.+..+.+ .+.++.++-++||++.... -....+.++
T Consensus 260 ~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~ 339 (368)
T PRK14456 260 PLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRLL 339 (368)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHHH
Confidence 37889998885 45556 24455444 445555655554 2456788889999875421 125667788
Q ss_pred HhCCceeeeccccc
Q 022889 146 LTGVKLITYGTVMG 159 (290)
Q Consensus 146 ~~gi~via~spl~~ 159 (290)
++|+.+......|.
T Consensus 340 ~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 340 DAGLQVTVRKSYGT 353 (368)
T ss_pred HCCCcEEeeCCCCc
Confidence 89999999887654
No 147
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=30.96 E-value=3.8e+02 Score=23.75 Aligned_cols=86 Identities=6% Similarity=0.002 Sum_probs=53.6
Q ss_pred ccEEEeecCCCCCccHHHHHHHHHHHHHcCc-ccEEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHH
Q 022889 68 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 145 (290)
Q Consensus 68 iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~ 145 (290)
.++.++..|-+. . +.+..+.+.-. --+.|=|-++.+.+..+++.+ -++++|+....+-. ..-..+...|+
T Consensus 183 ~~i~~iEqP~~~----~---~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~-~~d~i~ik~~~~GGi~~~~~i~~~a~ 254 (307)
T TIGR01927 183 GRIAFLEEPLPD----A---DEMSAFSEATGTAIALDESLWELPQLADEYGPG-WRGALVIKPAIIGSPAKLRDLAQKAH 254 (307)
T ss_pred CCceEEeCCCCC----H---HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcC-CCceEEECchhcCCHHHHHHHHHHHH
Confidence 455555555421 1 44555555532 245566667778888887643 36677776654311 11257899999
Q ss_pred HhCCceeeeccccccc
Q 022889 146 LTGVKLITYGTVMGGL 161 (290)
Q Consensus 146 ~~gi~via~spl~~G~ 161 (290)
.+||.++..+.+..|+
T Consensus 255 ~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 255 RLGLQAVFSSVFESSI 270 (307)
T ss_pred HcCCCEEEECccchHH
Confidence 9999999988776664
No 148
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=30.73 E-value=94 Score=25.81 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHhhCCCceeeeecccCCcHHHHHHhhhhh
Q 022889 216 GVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 255 (290)
Q Consensus 216 ~~s~~q~al~~~l~~~~v~~~l~g~~~~~~~~l~enl~a~ 255 (290)
..|-.++||+|+..++.-..++.|+.-+..+|.-.|+..+
T Consensus 75 D~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~l 114 (208)
T cd07995 75 DFTDFEKALKLALERGADEIVILGATGGRLDHTLANLNLL 114 (208)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEccCCCcHHHHHHHHHHH
Confidence 4688899999999998777888999988899998888875
No 149
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=30.64 E-value=3.1e+02 Score=25.38 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHHHhCCceeeecccccc
Q 022889 87 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 87 ~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl~~G 160 (290)
++.+.+|++...+- +.|-|-++.+.+..+++.+ -++++|.....+-. ..-.++...|+.+|+.+..++....|
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~-avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~e~~ 324 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQLN-AVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNNHLG 324 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcC-CCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCcccH
Confidence 45666677765543 5566667778888887754 47777777654321 12347899999999999988765333
No 150
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=30.36 E-value=2e+02 Score=23.42 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=54.4
Q ss_pred CCEeeCCC-----------CchHHHHHHHHhhhhcCCCCceeeeeeeccccCCCC-----CCCCHHHHHHHHHHHHHhhC
Q 022889 1 MGSFDFVD-----------GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPP-----VKMTSSIVRESIDVSRRRMD 64 (290)
Q Consensus 1 In~~DTA~-----------g~sE~~lG~~l~~~~r~~~~~~~~~~~~~~k~~~~~-----~~~~~~~i~~~~e~SL~~L~ 64 (290)
|-++||-. |..+..+-..|.+++- .+++-..--++|.... ..-++..+.+-+++.|++-+
T Consensus 81 v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~~r~----DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~ 156 (187)
T COG3172 81 VAFIDTDFLTTQAFCKKYEGREHPFLQALIAEYRF----DLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENN 156 (187)
T ss_pred eEEEeccHHHHHHHHHHHcccCCchHHHHHhhccc----ceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhC
Confidence 34788877 5555566666665332 3333333335553322 12356678888888888887
Q ss_pred CCcccEEEeecCCCCCccHHHHHHHHHHHHHcC
Q 022889 65 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 97 (290)
Q Consensus 65 ~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G 97 (290)
..|+ .|..++.... ....+++.+++..++
T Consensus 157 ~~~v---~i~~~~y~eR-~~~~~~aV~ell~~~ 185 (187)
T COG3172 157 IPFV---VIEGEDYLER-YLQAVEAVEELLGEK 185 (187)
T ss_pred CcEE---EEcCCCHHHH-HHHHHHHHHHHHhcc
Confidence 6554 4556555443 677888888888776
No 151
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=30.14 E-value=4.8e+02 Score=24.64 Aligned_cols=110 Identities=10% Similarity=0.067 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHc--CcccEEEccCCC---HHHHHHHHHcCC
Q 022889 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKIKTVALTNFD---TERLRIILENGI 120 (290)
Q Consensus 46 ~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~--G~ir~iGvs~~~---~~~l~~~~~~~~ 120 (290)
.++++.+.+.+++....++ .++.+-|-.+.......+.+++.|..++++ |. .+.+++.. .+.++++.+.+
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i--~i~lsTNG~~l~e~i~~L~~~g- 133 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDV--KLCLSTNGLMLPEHVDRLVDLG- 133 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCC--eEEEECCCCCCHHHHHHHHHCC-
Confidence 4788888888888776652 355566666543332235688889999988 43 57777643 57777777644
Q ss_pred CeeEecccccccCCCc-------------------c--------hHHHHHHHHhCCceeeeccccccc
Q 022889 121 PVVSNQVQHSVVDMRP-------------------Q--------QKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 121 ~~~~~q~~~n~~~~~~-------------------~--------~~~~~~~~~~gi~via~spl~~G~ 161 (290)
++.+.+-++-++... . .+-++.+.+.|+.+....++-.|+
T Consensus 134 -vd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpGi 200 (442)
T TIGR01290 134 -VGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPGI 200 (442)
T ss_pred -CCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCc
Confidence 334444444332110 0 123556778898887777766553
No 152
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=30.04 E-value=2.1e+02 Score=26.47 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecccccccCCCcc-hHHHHHHHHhC-Cceeeecccccc
Q 022889 83 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTG-VKLITYGTVMGG 160 (290)
Q Consensus 83 ~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~g-i~via~spl~~G 160 (290)
+..+...++++....-|...=+...+.+.++++++...+..+++.+-|++-.-.+ ..+.+.|+++| +.++.=++++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 3566666766444444443333445678888888755567888888888754333 57888999999 999998888877
Q ss_pred cccc
Q 022889 161 LLSE 164 (290)
Q Consensus 161 ~L~~ 164 (290)
.+..
T Consensus 184 ~~~~ 187 (386)
T PF01053_consen 184 YNQN 187 (386)
T ss_dssp TTC-
T ss_pred eeec
Confidence 5544
No 153
>PHA01976 helix-turn-helix protein
Probab=29.91 E-value=55 Score=21.35 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhhCC
Q 022889 206 QTLKRIASKHGVSIPVVAVRYILDQP 231 (290)
Q Consensus 206 ~~l~~la~~~~~s~~q~al~~~l~~~ 231 (290)
+.++.+.+..|+|..++|-..-.+..
T Consensus 5 ~rl~~~R~~~glt~~~lA~~~gvs~~ 30 (67)
T PHA01976 5 IQLIKARNARAWSAPELSRRAGVRHS 30 (67)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHH
Confidence 56777777778887777766544433
No 154
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.81 E-value=4.2e+02 Score=23.92 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCcc-cEEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHHHhCCceeeec
Q 022889 86 ALNHLTDLKEEGKI-KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 86 ~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~s 155 (290)
-++.+.+|+++.-+ -+.|=|.++...+..+++.+ -++++|+....+-. ..-..+...|+++||.++..+
T Consensus 215 d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~-~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 215 NVEALAEIAARTTIPIATGERLFSRWDFKELLEDG-AVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhC-CCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 36667777776544 35566677888888887744 47788887654311 223478999999999998665
No 155
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=29.78 E-value=2.5e+02 Score=23.35 Aligned_cols=73 Identities=15% Similarity=0.293 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCC----HHHHHHHHHcCCCeeE
Q 022889 49 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD----TERLRIILENGIPVVS 124 (290)
Q Consensus 49 ~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~----~~~l~~~~~~~~~~~~ 124 (290)
-..+.+.+++.++.+|.+ +.++ .+.... .....+.++++.++| +..|-++..+ ...+.++.+.++|+.+
T Consensus 13 ~~~~~~g~~~~a~~~g~~-~~~~----~~~~~d-~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYE-VEIV----FDAQND-PEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp HHHHHHHHHHHHHHHTCE-EEEE----EESTTT-HHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHcCCE-EEEe----CCCCCC-HHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEE
Confidence 355889999999999864 3332 222222 578889999999887 8888777544 4667777777777666
Q ss_pred eccc
Q 022889 125 NQVQ 128 (290)
Q Consensus 125 ~q~~ 128 (290)
+-..
T Consensus 86 ~d~~ 89 (257)
T PF13407_consen 86 VDSD 89 (257)
T ss_dssp ESST
T ss_pred Eecc
Confidence 4444
No 156
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.75 E-value=4.5e+02 Score=24.24 Aligned_cols=89 Identities=15% Similarity=0.056 Sum_probs=58.2
Q ss_pred EEeecCCCC----------CccHHHHHHHHHHHH-HcCc---ccEEEcc--CCCHHHHHHHHH--cCC---CeeEecccc
Q 022889 71 LQFHWWDYS----------NPGYLDALNHLTDLK-EEGK---IKTVALT--NFDTERLRIILE--NGI---PVVSNQVQH 129 (290)
Q Consensus 71 ~~lH~~~~~----------~~~~~e~~~~l~~l~-~~G~---ir~iGvs--~~~~~~l~~~~~--~~~---~~~~~q~~~ 129 (290)
+-||.++.. ..+++++++++.++. +.|+ |.|+=+. |.+.+.+.++.+ .+. +..++-++|
T Consensus 242 vSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpy 321 (373)
T PRK14459 242 VSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPL 321 (373)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEcc
Confidence 677887532 123788999988876 4464 4555555 345554444443 144 678999999
Q ss_pred cccCCC----cc----hHHHHHHHHhCCceeeeccccc
Q 022889 130 SVVDMR----PQ----QKMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 130 n~~~~~----~~----~~~~~~~~~~gi~via~spl~~ 159 (290)
|++... +. ....+..+++||.+......+.
T Consensus 322 Np~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 322 NPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 997531 11 2467778899999999887754
No 157
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=29.58 E-value=4.6e+02 Score=24.28 Aligned_cols=77 Identities=12% Similarity=0.061 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecccccccCCC-cchHHHHHHHHhCCceeeecccccc
Q 022889 84 LDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 84 ~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl~~G 160 (290)
..++..+..+.+.+.++.+-+...+.+.++++++...+..++..+-|+.-+. .-.++.+.|+++|+.++.=.+.+.|
T Consensus 110 ~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~ 187 (405)
T PRK08776 110 GGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP 187 (405)
T ss_pred hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 4455555555555556666665556777777765344566666666765332 2357899999999999887776554
No 158
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=28.93 E-value=77 Score=23.08 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=38.1
Q ss_pred cCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHHHhCCceeeecccccc
Q 022889 105 TNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 105 s~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl~~G 160 (290)
+.++.+.+..+++.+ -++++|+...-+-. ..-..+...|+++|+.+...+. .++
T Consensus 3 ~~~~~~~~~~li~~~-a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAG-AVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTT-SCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcC-CCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 557788888888854 46888887654311 1234789999999999999997 554
No 159
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=28.87 E-value=1.4e+02 Score=20.84 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=24.0
Q ss_pred chhHHHHHHHHHHHHHHhCCCHHHHHHH
Q 022889 198 WSQFQVLLQTLKRIASKHGVSIPVVAVR 225 (290)
Q Consensus 198 ~~~~~~~~~~l~~la~~~~~s~~q~al~ 225 (290)
++.....+.+|.++|++.|++..+++.-
T Consensus 47 P~~V~~sl~kL~~La~~N~v~feeLc~Y 74 (82)
T PF11020_consen 47 PEKVMDSLSKLYKLAKENNVSFEELCVY 74 (82)
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 4677788899999999999999998753
No 160
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=28.50 E-value=2.9e+02 Score=24.69 Aligned_cols=111 Identities=17% Similarity=0.208 Sum_probs=57.3
Q ss_pred ceeeeeeeccc-cCCCCCCCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEcc--
Q 022889 29 EFLDKVRGLTK-WVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-- 105 (290)
Q Consensus 29 ~~~~~~~~~~k-~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs-- 105 (290)
.++.+.++... ......+.-.+.+.+.++..-++||...+.+-+--...+..---..+-+.|++|.++| ++.|=|-
T Consensus 185 ~llfSaHglP~~~~~~~GdpY~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V~v~p~ 263 (316)
T PF00762_consen 185 HLLFSAHGLPQRYVEDKGDPYPAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRVVVVPP 263 (316)
T ss_dssp EEEEEEE--BHHHHTCCT-SHHHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEEEEEET
T ss_pred EEEEccCCCCccccccCCCChHHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeEEEECC
Confidence 45555554432 2111123346778888888889998876555443222221100123566788999999 4555443
Q ss_pred CCCHHHHHHHHHcCCCeeEecccccccCCCcchHHHHHHHHhCCceeeecccc
Q 022889 106 NFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVM 158 (290)
Q Consensus 106 ~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~ 158 (290)
+|..+.++.+.+ + +.+..+.+++.|+.-+.+-|--
T Consensus 264 gFv~D~lETl~e-------------i-----die~re~~~~~G~~~~~~ip~l 298 (316)
T PF00762_consen 264 GFVSDCLETLYE-------------I-----DIEYRELAEEAGGEEFVRIPCL 298 (316)
T ss_dssp T-SSSSHHHHCC-------------C-----CCHHHHHHHHHTCCEEEE---S
T ss_pred ccccccHhHHHH-------------H-----HHHHHHHHHHcCCceEEEeCCC
Confidence 233333333322 1 3366788899999777777653
No 161
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=28.07 E-value=4.7e+02 Score=23.87 Aligned_cols=99 Identities=10% Similarity=0.052 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCc-ccEEEccCCCHHHHHHHHHcCCCeeE
Q 022889 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 124 (290)
Q Consensus 46 ~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~ 124 (290)
.++.+... .+-+.|.++|+++|.+- +|.. . +.-++.+..+.+.++ .+..+++......++.+.+.+.....
T Consensus 19 ~~s~~~k~-~ia~~L~~~Gv~~IEvG---~p~~--~--~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~ 90 (365)
T TIGR02660 19 AFTAAEKL-AIARALDEAGVDELEVG---IPAM--G--EEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVH 90 (365)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEe---CCCC--C--HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEE
Confidence 45666544 44455999999998884 3332 1 233556666666543 66677777788889888876644322
Q ss_pred eccccccc------CCCcc------hHHHHHHHHhCCcee
Q 022889 125 NQVQHSVV------DMRPQ------QKMAELCQLTGVKLI 152 (290)
Q Consensus 125 ~q~~~n~~------~~~~~------~~~~~~~~~~gi~vi 152 (290)
+-+..|-. .+..+ .+.+.+++++|+.+.
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 22222211 11111 257888999997644
No 162
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=27.98 E-value=4.7e+02 Score=23.89 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=57.1
Q ss_pred EEeecCCCCC----------ccHHHHHHHHHHHHHcCcccEEEcc-------CCCHHHHHHHHH--cCCCeeEecccccc
Q 022889 71 LQFHWWDYSN----------PGYLDALNHLTDLKEEGKIKTVALT-------NFDTERLRIILE--NGIPVVSNQVQHSV 131 (290)
Q Consensus 71 ~~lH~~~~~~----------~~~~e~~~~l~~l~~~G~ir~iGvs-------~~~~~~l~~~~~--~~~~~~~~q~~~n~ 131 (290)
+.||.|+... ..+++++++.+...+... +.|-+- |.+.+....+.+ .+++..++-++||+
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np 294 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNP 294 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCC
Confidence 6789885321 126788888888776544 333221 445666666655 36788999999999
Q ss_pred cCCCc-c-------hHHHHHHHHhCCceeeeccccc
Q 022889 132 VDMRP-Q-------QKMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 132 ~~~~~-~-------~~~~~~~~~~gi~via~spl~~ 159 (290)
+.... + ....+..+++||.+....+-+.
T Consensus 295 ~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~ 330 (349)
T COG0820 295 VPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGD 330 (349)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccc
Confidence 86432 1 2455666778888888777554
No 163
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=27.95 E-value=80 Score=22.22 Aligned_cols=68 Identities=10% Similarity=0.029 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHc-CcccEEEccCCCHHHHHHHHH-cCCCeeEe
Q 022889 50 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE-GKIKTVALTNFDTERLRIILE-NGIPVVSN 125 (290)
Q Consensus 50 ~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~-G~ir~iGvs~~~~~~l~~~~~-~~~~~~~~ 125 (290)
+.+=...+.-...||....|+..|..-.+... .+.+.+.|..+++. |+ +-+...|..++. .+..+++.
T Consensus 10 ~~LG~~W~~Lar~Lgls~~~I~~i~~~~p~~l-~eQv~~mL~~W~~r~G~-------~ATv~~L~~aL~~~~~~~~~~ 79 (83)
T cd08319 10 QRLGPEWEQVLLDLGLSQTDIYRCKENHPHNV-QSQIVEALVKWRQRFGK-------KATVQSLIQSLKAVEVDPSVL 79 (83)
T ss_pred HHHhhhHHHHHHHcCCCHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhcCC-------CCcHHHHHHHHHHcCCCHHHH
Confidence 34556677788899999999988866434333 47788888888885 54 556777777766 34444443
No 164
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=27.86 E-value=4.4e+02 Score=23.51 Aligned_cols=112 Identities=9% Similarity=-0.128 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCC-------------ccHHHHHHHHHHHHHc-CcccEEEccCCCHH
Q 022889 45 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-------------PGYLDALNHLTDLKEE-GKIKTVALTNFDTE 110 (290)
Q Consensus 45 ~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~-------------~~~~e~~~~l~~l~~~-G~ir~iGvs~~~~~ 110 (290)
+..+.+.|.+.+++..+ .|...+-+..=..|+... ...+-+.+.++.++++ |..-.+.+...+.+
T Consensus 33 ~~l~~eeI~~~a~~~~~-~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~~~~~~~~~g~lt~e 111 (322)
T TIGR03550 33 ALLSPEEVLEILRKGAA-AGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEYLRELCELALEETGLLPHTNPGVMSRD 111 (322)
T ss_pred ccCCHHHHHHHHHHHHH-CCCCEEEEecCCCccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcCCccccCCCCCCHH
Confidence 35789999999988665 587664332223343320 0013334444556655 66666666667888
Q ss_pred HHHHHHHcCCCeeEecccccc---------cCC--Cc--chHHHHHHHHhCCceeeeccc
Q 022889 111 RLRIILENGIPVVSNQVQHSV---------VDM--RP--QQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 111 ~l~~~~~~~~~~~~~q~~~n~---------~~~--~~--~~~~~~~~~~~gi~via~spl 157 (290)
.+..+.+.+.....++-.++- ..+ .. --+.++.+++.|+.+-+.-.+
T Consensus 112 ~l~~Lk~aG~~~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~Gi~~~s~~i~ 171 (322)
T TIGR03550 112 ELARLKPVNASMGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKIPFTTGILI 171 (322)
T ss_pred HHHHHHhhCCCCCcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHcCCCccceeeE
Confidence 888887754222222111111 000 00 125677788889876554443
No 165
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=27.86 E-value=1.3e+02 Score=26.50 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=57.3
Q ss_pred HHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccC---CCHHHHHHHHH----cCCCeeEecccccc
Q 022889 59 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---FDTERLRIILE----NGIPVVSNQVQHSV 131 (290)
Q Consensus 59 SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~---~~~~~l~~~~~----~~~~~~~~q~~~n~ 131 (290)
++++..-+..|+..+..|.... -.+ +..++...+ .|-|+. +....+.++++ .+++..++-++||+
T Consensus 155 ~~kk~a~E~~~~~IIDsaaG~g---CpV---i~sl~~aD~--ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~ 226 (284)
T COG1149 155 ALKKHAKELADLLIIDSAAGTG---CPV---IASLKGADL--AILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNL 226 (284)
T ss_pred HHHHhhhhhcceeEEecCCCCC---ChH---HHhhccCCE--EEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCC
Confidence 4445544447889998875321 112 334444544 455543 33344444443 47899999999976
Q ss_pred cCCCcchHHHHHHHHhCCceeeeccccc
Q 022889 132 VDMRPQQKMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 132 ~~~~~~~~~~~~~~~~gi~via~spl~~ 159 (290)
- .. ++.++|.+.|+.+++.-|+-.
T Consensus 227 g---~s-~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 227 G---DS-EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred C---ch-HHHHHHHHcCCCeeEECCcch
Confidence 3 22 799999999999999998854
No 166
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=27.55 E-value=2e+02 Score=22.25 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccC
Q 022889 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN 106 (290)
Q Consensus 46 ~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~ 106 (290)
..+.+.+...+++.++. .-+.-.+=..|...+ +..+.+.|..+++.| +..+|+.+
T Consensus 80 ~v~~~~L~~~L~~~~~~----~~~~~V~I~aD~~~~-~~~vv~vmd~l~~aG-~~~v~l~t 134 (141)
T PRK11267 80 PVTDETMITALDALTEG----KKDTTIFFRADKTVD-YETLMKVMDTLHQAG-YLKIGLVG 134 (141)
T ss_pred cccHHHHHHHHHHHHhc----CCCceEEEEcCCCCC-HHHHHHHHHHHHHcC-CCeEEEEe
Confidence 34555555555554432 123323335566666 899999999999999 45688765
No 167
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=27.47 E-value=2.5e+02 Score=22.10 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=39.9
Q ss_pred cEEEccCCCH--HHHHHHHHcCCCeeEecccccccCCCcchHHHHHHHHhCCceeeecccccccc
Q 022889 100 KTVALTNFDT--ERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLL 162 (290)
Q Consensus 100 r~iGvs~~~~--~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~L 162 (290)
.-+|...|+. ..+..+... .-|+++-.... +. ..+.+..+.++++.++..|.+.++++
T Consensus 18 ak~GlDgHd~gakvia~~l~d-~GfeVi~~g~~---~t-p~e~v~aA~~~dv~vIgvSsl~g~h~ 77 (143)
T COG2185 18 AKLGLDGHDRGAKVIARALAD-AGFEVINLGLF---QT-PEEAVRAAVEEDVDVIGVSSLDGGHL 77 (143)
T ss_pred eccCccccccchHHHHHHHHh-CCceEEecCCc---CC-HHHHHHHHHhcCCCEEEEEeccchHH
Confidence 3457777764 556666663 24565544432 33 36889999999999999999988864
No 168
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=27.35 E-value=1.3e+02 Score=22.59 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcC
Q 022889 53 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 97 (290)
Q Consensus 53 ~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G 97 (290)
+..+++.|+.+.....|.+++..++.-..+..+....++.|...|
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g 95 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG 95 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC
Confidence 344444444444445666666666544333445555555555544
No 169
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=27.22 E-value=3.6e+02 Score=28.01 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHHhhCC-C-------------------------cccEEEeecCCCCCcc--HHHHHHHHHHHHHcC
Q 022889 46 KMTSSIVRESIDVSRRRMDV-P-------------------------CLDMLQFHWWDYSNPG--YLDALNHLTDLKEEG 97 (290)
Q Consensus 46 ~~~~~~i~~~~e~SL~~L~~-d-------------------------~iDl~~lH~~~~~~~~--~~e~~~~l~~l~~~G 97 (290)
+....++.+.++.+|+.+|. + ...+++|..|....++ ...+|..+.++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 44556677777877777663 1 4567788888654432 468999999999999
Q ss_pred cccEEEccCCCHHHHHHHHH
Q 022889 98 KIKTVALTNFDTERLRIILE 117 (290)
Q Consensus 98 ~ir~iGvs~~~~~~l~~~~~ 117 (290)
+ ++=+.+|+.+..+.+..
T Consensus 749 ~--aiiLTSHsMeE~EaLCt 766 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCT 766 (885)
T ss_pred C--EEEEEcCCHHHHHHHhh
Confidence 9 89999999999999886
No 170
>COG2606 EbsC Uncharacterized conserved protein [Function unknown]
Probab=27.19 E-value=82 Score=25.09 Aligned_cols=62 Identities=15% Similarity=0.057 Sum_probs=44.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHhh---CCCceeeeecccCCcHHHHHHhhhhhcC-CCCHHHHHHHHH
Q 022889 208 LKRIASKHGVSIPVVAVRYILD---QPAVAGSMIGVRLGLAEHIQDTNAIFML-SLDEDDVNSIQE 269 (290)
Q Consensus 208 l~~la~~~~~s~~q~al~~~l~---~~~v~~~l~g~~~~~~~~l~enl~a~~~-~L~~e~~~~l~~ 269 (290)
-.+.|+.+|+++.|++=.-++. .+.+..+++|...-+..++...+..... -+++++.+++..
T Consensus 29 ~~~aae~~g~~~~~i~KTLvl~~~~~~~~~~V~p~~~~Ldlkkla~~~G~kk~~ma~~~~v~~~TG 94 (155)
T COG2606 29 GAEAAEALGVDPAQVAKTLVLAVDKGGPALAVVPGDQRLDLKKLAKALGAKKAEMADPEEVQRLTG 94 (155)
T ss_pred HHHHHHHhCCCHHHeeEEEEEEcCCCCEEEEEEeCcCccCHHHHHHHhCCcccccCCHHHHHHHhC
Confidence 5678889999999987333333 4456778899888777777766666554 678888887776
No 171
>PRK11024 colicin uptake protein TolR; Provisional
Probab=27.18 E-value=1.9e+02 Score=22.40 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccC
Q 022889 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN 106 (290)
Q Consensus 48 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~ 106 (290)
+.+.+...++..++. .-+...+=..|...+ +..+.+.|+.+++.| +..+++.+
T Consensus 86 ~~~~L~~~l~~~~~~----~~~~~V~i~aD~~~~-~~~vv~vmd~~k~aG-~~~v~l~t 138 (141)
T PRK11024 86 PEEQVVAEAKSRFKA----NPKTVFLIGGAKDVP-YDEIIKALNLLHSAG-VKSVGLMT 138 (141)
T ss_pred CHHHHHHHHHHHHhh----CCCceEEEEcCCCCC-HHHHHHHHHHHHHcC-CCeEEEEe
Confidence 445555555444432 224334445666666 899999999999998 44567653
No 172
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.01 E-value=4.3e+02 Score=24.10 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCc----ccEEEcc--CCCHHHHHHHHH--cCCCeeEecccccccCCC----c-c---hHHHHHHHH
Q 022889 83 YLDALNHLTDLKEEGK----IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVVDMR----P-Q---QKMAELCQL 146 (290)
Q Consensus 83 ~~e~~~~l~~l~~~G~----ir~iGvs--~~~~~~l~~~~~--~~~~~~~~q~~~n~~~~~----~-~---~~~~~~~~~ 146 (290)
+++++++++.+.+.+. |+++=+. |.+.+.++.+.+ .+.+..++-++||++... + . ....+.+++
T Consensus 245 l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~~ 324 (356)
T PRK14455 245 LEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTLKK 324 (356)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHHHH
Confidence 6889999998877542 3455444 445566666654 245677888899987531 1 1 245666888
Q ss_pred hCCceeeeccccc
Q 022889 147 TGVKLITYGTVMG 159 (290)
Q Consensus 147 ~gi~via~spl~~ 159 (290)
+|+.+......+.
T Consensus 325 ~gi~v~ir~~~g~ 337 (356)
T PRK14455 325 NGVNCTIRREHGT 337 (356)
T ss_pred CCCcEEEeCCCCc
Confidence 9999988877654
No 173
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.96 E-value=4.8e+02 Score=23.69 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=59.3
Q ss_pred cccEEEeecCCCC----------CccHHHHHHHHHH-HHHcCc---ccEEEcc--CCCHHHHHHHHH--cCCCeeEeccc
Q 022889 67 CLDMLQFHWWDYS----------NPGYLDALNHLTD-LKEEGK---IKTVALT--NFDTERLRIILE--NGIPVVSNQVQ 128 (290)
Q Consensus 67 ~iDl~~lH~~~~~----------~~~~~e~~~~l~~-l~~~G~---ir~iGvs--~~~~~~l~~~~~--~~~~~~~~q~~ 128 (290)
....+.||.++.. ...++++++++.+ +.+.|+ |+++=+. |.+.+.++++.+ .++++.++-++
T Consensus 212 ~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIP 291 (345)
T PRK14457 212 FTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIP 291 (345)
T ss_pred eEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEec
Confidence 3466888987532 1226788877766 455664 4666555 445666666554 25667888899
Q ss_pred ccccCC----Ccch----HHHHHHHHhCCceeeeccccc
Q 022889 129 HSVVDM----RPQQ----KMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 129 ~n~~~~----~~~~----~~~~~~~~~gi~via~spl~~ 159 (290)
||++.. .+.. ...+.++++|+.+......|.
T Consensus 292 ynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 292 YNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 998742 1222 345667778999988777654
No 174
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=26.93 E-value=1.2e+02 Score=22.85 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHH-----cCCCeeEecccccccCCCcchHHHHHHHHhCCceeeeccc
Q 022889 106 NFDTERLRIILE-----NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 106 ~~~~~~l~~~~~-----~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 157 (290)
+.+.+.+..++. .++.+..+-.--++-....+..+++++++.|+.+..|++-
T Consensus 11 ~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~~~~~~~~~e 67 (121)
T PF01890_consen 11 GAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEELGIPLRFFSAE 67 (121)
T ss_dssp S--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCTSEEEEE-HH
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhCCCeEEECHH
Confidence 345555555443 2333333333334433445678999999999999999864
No 175
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=26.71 E-value=4.1e+02 Score=23.46 Aligned_cols=43 Identities=19% Similarity=0.297 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHhhCCCceeeeecccCCcHHHHHHh
Q 022889 206 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDT 251 (290)
Q Consensus 206 ~~l~~la~~~~~------s~~q~al~~~l~~~~v~~~l~g~~~~~~~~l~en 251 (290)
.+|.++|+++|. ++.++-..|...... ..+..|+|+ |+.+-+.
T Consensus 224 ~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGiTAGAST--P~~li~e 272 (280)
T TIGR00216 224 TRLYEIAEEHGPPSYLIETAEELPEEWLKGVKV-VGITAGAST--PDWIIEE 272 (280)
T ss_pred HHHHHHHHHhCCCEEEECChHHCCHHHhCCCCE-EEEEecCCC--CHHHHHH
Confidence 688999998874 688999999987654 567799999 9977553
No 176
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=26.63 E-value=2.4e+02 Score=26.08 Aligned_cols=77 Identities=19% Similarity=0.289 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcC-cccEEEccCC---CHHHHHHHHHcCCCeeEecccccccC-CCcchHHHHHHHHhCCceeeecccc
Q 022889 84 LDALNHLTDLKEEG-KIKTVALTNF---DTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQLTGVKLITYGTVM 158 (290)
Q Consensus 84 ~e~~~~l~~l~~~G-~ir~iGvs~~---~~~~l~~~~~~~~~~~~~q~~~n~~~-~~~~~~~~~~~~~~gi~via~spl~ 158 (290)
.-+++.+..|..+| .|.++.|... +.++|++++.......++|--=|-.- -.+-.++-..|+++|+.+..=...+
T Consensus 102 ~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa 181 (386)
T COG1104 102 PAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQA 181 (386)
T ss_pred HHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhh
Confidence 45788888887778 6899998875 56788877763322333332222110 1333588889999987776655554
Q ss_pred cc
Q 022889 159 GG 160 (290)
Q Consensus 159 ~G 160 (290)
-|
T Consensus 182 ~G 183 (386)
T COG1104 182 VG 183 (386)
T ss_pred cC
Confidence 44
No 177
>PRK10508 hypothetical protein; Provisional
Probab=26.58 E-value=1.3e+02 Score=27.13 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHH
Q 022889 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE 95 (290)
Q Consensus 48 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~ 95 (290)
+++.|.+.+++..+++|+|.+ +++.+.. + .++.++.++-|.+
T Consensus 287 tpe~V~~kl~~l~~~~g~del---~~~~~~~--~-~e~~~~S~~lla~ 328 (333)
T PRK10508 287 DKAKVRHGLQSILRETQADEI---MVNGQIF--D-HQARLHSFELAMD 328 (333)
T ss_pred CHHHHHHHHHHHHHHHCcCEE---EEECCCC--C-HHHHHHHHHHHHH
Confidence 789999999999999998887 3333332 2 4556666655544
No 178
>PRK07329 hypothetical protein; Provisional
Probab=26.41 E-value=4.1e+02 Score=22.63 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=53.9
Q ss_pred HHHHHHHHhhCCCcccEEEeecCCCC--------CccHHHHH----HHHHHHHHcC-cccEEEccC----------CC--
Q 022889 54 ESIDVSRRRMDVPCLDMLQFHWWDYS--------NPGYLDAL----NHLTDLKEEG-KIKTVALTN----------FD-- 108 (290)
Q Consensus 54 ~~~e~SL~~L~~d~iDl~~lH~~~~~--------~~~~~e~~----~~l~~l~~~G-~ir~iGvs~----------~~-- 108 (290)
..+++-|.+...||+ +.-+|+.+.. ..+.++++ +.+.++++.+ ++..+|=-. .+
T Consensus 83 ~~~~~~l~~~~~Dyv-IgSvH~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~ 161 (246)
T PRK07329 83 DDILDFLANKDFDLK-LLSVHHNGVYDYLDDEVADMDKKELLQEYFEKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELK 161 (246)
T ss_pred HHHHHHhccCCCCeE-EEEEEEcCCCCCccHHHhcCCHHHHHHHHHHHHHHHHHccCCCCEeeeccHHHHhCCCCCcChH
Confidence 344445555566777 7778986321 01234444 7778888876 665555222 11
Q ss_pred --H----HHHHHHHHcCCCeeEeccccc-ccCCCcchHHHHHHHHhCCceeeecc
Q 022889 109 --T----ERLRIILENGIPVVSNQVQHS-VVDMRPQQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 109 --~----~~l~~~~~~~~~~~~~q~~~n-~~~~~~~~~~~~~~~~~gi~via~sp 156 (290)
. ..++.+.+.+..+.+|-..+. -........+++.|++.|+..+..+.
T Consensus 162 ~~~~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~~~~l~~~~~~g~~~i~~gS 216 (246)
T PRK07329 162 AFEPQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLYRYAIELYKQLGGKLFSIGS 216 (246)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECcccccCCCCcchHHHHHHHHHcCCeEEEecC
Confidence 1 112333345666777664331 11111124578889999886555543
No 179
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=25.99 E-value=66 Score=21.18 Aligned_cols=17 Identities=47% Similarity=0.536 Sum_probs=15.0
Q ss_pred HHHHHHHHhCCCHHHHH
Q 022889 207 TLKRIASKHGVSIPVVA 223 (290)
Q Consensus 207 ~l~~la~~~~~s~~q~a 223 (290)
.+.+||+++|+|..++-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 78999999999998865
No 180
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=25.95 E-value=3.9e+02 Score=22.31 Aligned_cols=98 Identities=12% Similarity=0.132 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHH----cCCCe
Q 022889 47 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGIPV 122 (290)
Q Consensus 47 ~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~----~~~~~ 122 (290)
++.+... .+-+.|.++|.++|.+- .|..... -.+.++.+.+.... .+-.+++......++.+.+ .+...
T Consensus 11 ~~~~~k~-~i~~~L~~~Gv~~iEvg---~~~~~~~-~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 11 FSTEEKL-EIAKALDEAGVDYIEVG---FPFASED-DFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp --HHHHH-HHHHHHHHHTTSEEEEE---HCTSSHH-HHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred cCHHHHH-HHHHHHHHhCCCEEEEc---ccccCHH-HHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCE
Confidence 4555444 44556999999998887 3322211 24445555555555 3444555566666666443 45443
Q ss_pred eEecccccccC------CC------cchHHHHHHHHhCCce
Q 022889 123 VSNQVQHSVVD------MR------PQQKMAELCQLTGVKL 151 (290)
Q Consensus 123 ~~~q~~~n~~~------~~------~~~~~~~~~~~~gi~v 151 (290)
.-+-...|... .. .-.+.+.++++.|+.+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 33333333311 00 1136788999999988
No 181
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=25.89 E-value=4.4e+02 Score=22.87 Aligned_cols=106 Identities=13% Similarity=0.203 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeec-CC-----CCCccHHHHHHHHHHHHHcCcccEEEccCCC--------H-H
Q 022889 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW-WD-----YSNPGYLDALNHLTDLKEEGKIKTVALTNFD--------T-E 110 (290)
Q Consensus 46 ~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~-~~-----~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~--------~-~ 110 (290)
+.++..+...+... ..+|++. ++.|-. +. .....+....+-++.+++..--.+||+..++ . .
T Consensus 69 ~~n~~~l~~~L~~~-~~~Gi~n--vL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~ 145 (272)
T TIGR00676 69 GATREEIREILREY-RELGIRH--ILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEE 145 (272)
T ss_pred CCCHHHHHHHHHHH-HHCCCCE--EEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHH
Confidence 34555666666543 6666432 232322 21 1111134455555555554223588877642 1 3
Q ss_pred HHHHHHH---cCCCeeEecccccccCCCcchHHHHHHHHhCCceeeeccccccc
Q 022889 111 RLRIILE---NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 111 ~l~~~~~---~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
.+..+.+ .|-.+.+-|.-|+. ..-..+++.|++.||.+ |+--|+
T Consensus 146 ~~~~L~~K~~aGA~f~iTQ~~fd~---~~~~~~~~~~~~~gi~~----PIi~Gi 192 (272)
T TIGR00676 146 DIENLKRKVDAGADYAITQLFFDN---DDYYRFVDRCRAAGIDV----PIIPGI 192 (272)
T ss_pred HHHHHHHHHHcCCCeEeeccccCH---HHHHHHHHHHHHcCCCC----CEeccc
Confidence 3444433 46678888888886 33457888999998765 554454
No 182
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.79 E-value=5.3e+02 Score=23.72 Aligned_cols=86 Identities=14% Similarity=0.076 Sum_probs=55.2
Q ss_pred EEEeecCCCCCccHHHHHHHHHHHHHc------CcccEEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHH
Q 022889 70 MLQFHWWDYSNPGYLDALNHLTDLKEE------GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAE 142 (290)
Q Consensus 70 l~~lH~~~~~~~~~~e~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~ 142 (290)
++++..|-+... .++-++.+.+|++. +.--..|=|.++.+.+..+++.+ -.+++|+..+-.-. ..-..+..
T Consensus 229 ~~~iEqP~~~~d-~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~-a~div~~kl~k~GGIt~a~kia~ 306 (369)
T cd03314 229 PLRIEGPMDAGS-REAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAG-AAHMVQIKTPDLGGIDNTIDAVL 306 (369)
T ss_pred cEEEecCCCCCc-chhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhC-CCCEEEecchhcCCHHHHHHHHH
Confidence 346666653221 12345666667665 44455666777888888888754 47778877765321 12357899
Q ss_pred HHHHhCCceeeeccc
Q 022889 143 LCQLTGVKLITYGTV 157 (290)
Q Consensus 143 ~~~~~gi~via~spl 157 (290)
.|+.+||.++..+..
T Consensus 307 lA~a~Gi~~~~h~~~ 321 (369)
T cd03314 307 YCKEHGVGAYLGGSC 321 (369)
T ss_pred HHHHcCCcEEEeCCC
Confidence 999999999987643
No 183
>PF13518 HTH_28: Helix-turn-helix domain
Probab=25.71 E-value=85 Score=19.05 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhh
Q 022889 207 TLKRIASKHGVSIPVVAVRYILD 229 (290)
Q Consensus 207 ~l~~la~~~~~s~~q~al~~~l~ 229 (290)
.+.++|.++|+|..++ .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 5667888889988665 777754
No 184
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=25.67 E-value=1.6e+02 Score=27.21 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCC
Q 022889 85 DALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 121 (290)
Q Consensus 85 e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 121 (290)
...+.++.|+++|.+-++|-|+-+.+++.++.+.|..
T Consensus 178 ~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~ 214 (380)
T TIGR00221 178 QHFELIRHLKDAGIIVSAGHTNATYELAKAAFKAGAT 214 (380)
T ss_pred ChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHcCCC
Confidence 3567788999999999999999999999999886644
No 185
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=25.38 E-value=96 Score=28.00 Aligned_cols=44 Identities=11% Similarity=0.017 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhCC--CcccEEEeecCCCCCccHHHHHHHHHHHHHcCcc
Q 022889 52 VRESIDVSRRRMDV--PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI 99 (290)
Q Consensus 52 i~~~~e~SL~~L~~--d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~i 99 (290)
..+.+.+.+++||+ |+-..+.-+.++ . ...+...+.+|.++|.|
T Consensus 89 ~~~~~~~~~~~lgi~~~~~~~~~T~~~~---~-~~~v~~~f~~L~~~G~i 134 (338)
T cd00818 89 YVDEQEEQFQRLGVWVDWENPYKTMDPE---Y-MESVWWVFKQLHEKGLL 134 (338)
T ss_pred HHHHHHHHHHHhCceecCCCCeECCCHH---H-HHHHHHHHHHHHHCCCE
Confidence 45777889999998 443333332222 2 67899999999999998
No 186
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=24.98 E-value=4.5e+02 Score=23.77 Aligned_cols=62 Identities=10% Similarity=0.097 Sum_probs=39.9
Q ss_pred cEEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHHHhCCceeeeccccccc
Q 022889 100 KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 100 r~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
+..-+...+.+.+++++....+..++..+.|+.-. ..-+++.+.|+++|+.++.=...+.+.
T Consensus 117 ~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~ 179 (366)
T PRK08247 117 RFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPV 179 (366)
T ss_pred eEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence 33334444666777666534456666677787522 223578999999999998877765444
No 187
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=24.94 E-value=4.7e+02 Score=22.91 Aligned_cols=66 Identities=17% Similarity=0.329 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHc-CcccEEEccCCC--------HH-HHHHHHH---cCCCeeEecccccccCCCcchHHHHHHHHhCC
Q 022889 83 YLDALNHLTDLKEE-GKIKTVALTNFD--------TE-RLRIILE---NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGV 149 (290)
Q Consensus 83 ~~e~~~~l~~l~~~-G~ir~iGvs~~~--------~~-~l~~~~~---~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi 149 (290)
+.-..+.++.+++. |.-.+||+..++ .+ .+..+.+ .|..+.+-|+-|+. ..-...++.|++.||
T Consensus 112 f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~Fd~---~~~~~f~~~~~~~gi 188 (281)
T TIGR00677 112 FQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLFYDV---DNFLKFVNDCRAIGI 188 (281)
T ss_pred CcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccceecH---HHHHHHHHHHHHcCC
Confidence 34455666666664 444689998763 11 2334432 56678888888876 333478888999976
Q ss_pred ce
Q 022889 150 KL 151 (290)
Q Consensus 150 ~v 151 (290)
.+
T Consensus 189 ~~ 190 (281)
T TIGR00677 189 DC 190 (281)
T ss_pred CC
Confidence 54
No 188
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=24.92 E-value=3.9e+02 Score=22.94 Aligned_cols=72 Identities=13% Similarity=0.135 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHHHhCCceeeecccccc
Q 022889 87 LNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 87 ~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl~~G 160 (290)
++.+.++. .+.=-..|=|-++.+.+..+++.+ .++++|+....+-. ..-..+...|+.+|+.++..+.+..+
T Consensus 167 ~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~-~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ 239 (263)
T cd03320 167 LAELRRLA-AGVPIALDESLRRLDDPLALAAAG-ALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESS 239 (263)
T ss_pred HHHHHHhh-cCCCeeeCCccccccCHHHHHhcC-CCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhH
Confidence 44455555 333345565566667777777643 46777777654311 12247899999999999887655444
No 189
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=24.75 E-value=4.7e+02 Score=22.81 Aligned_cols=110 Identities=12% Similarity=0.008 Sum_probs=73.6
Q ss_pred CCCCHHHHHHHHHHHHHhh------CCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc
Q 022889 45 VKMTSSIVRESIDVSRRRM------DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 118 (290)
Q Consensus 45 ~~~~~~~i~~~~e~SL~~L------~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 118 (290)
.+++++.-.+-.+-+.+-+ ++++|-|=.+..+....|+..|++++-+.|+++|-+- +=..+-++-..+++.+.
T Consensus 79 Gc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~a~rLed~ 157 (267)
T CHL00162 79 GCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTV-LPYINADPMLAKHLEDI 157 (267)
T ss_pred CCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHHc
Confidence 4677777666666666666 7899999888888777788899999999999999863 23344456666666664
Q ss_pred CCCeeEecccccccCCC--c-chHHHHH-HHHhCCceeeeccc
Q 022889 119 GIPVVSNQVQHSVVDMR--P-QQKMAEL-CQLTGVKLITYGTV 157 (290)
Q Consensus 119 ~~~~~~~q~~~n~~~~~--~-~~~~~~~-~~~~gi~via~spl 157 (290)
| +.+++.--+++--. . ....++. +.+.++.++.-.-+
T Consensus 158 G--c~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGI 198 (267)
T CHL00162 158 G--CATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIIDAGI 198 (267)
T ss_pred C--CeEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEeCCc
Confidence 4 66666666665211 1 1233443 44456888776433
No 190
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=24.61 E-value=5e+02 Score=23.10 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=33.4
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHhhCCCceeeeecccCCcHHHHHHh
Q 022889 206 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDT 251 (290)
Q Consensus 206 ~~l~~la~~~~~------s~~q~al~~~l~~~~v~~~l~g~~~~~~~~l~en 251 (290)
.+|.++|++.+. ++.++-..|+.... ...+..|+|+ |+.+-+.
T Consensus 226 ~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGAST--P~~li~e 274 (298)
T PRK01045 226 NRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASA--PEWLVQE 274 (298)
T ss_pred HHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCC--CHHHHHH
Confidence 688899998774 68899999997654 4567789999 8877553
No 191
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.59 E-value=5.4e+02 Score=23.45 Aligned_cols=90 Identities=9% Similarity=0.067 Sum_probs=58.4
Q ss_pred EEEeecCCCC----------CccHHHHHHHHHHHHHcC--c--ccEEEcc--CCCHHHHHHHHH--cCCCeeEecccccc
Q 022889 70 MLQFHWWDYS----------NPGYLDALNHLTDLKEEG--K--IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSV 131 (290)
Q Consensus 70 l~~lH~~~~~----------~~~~~e~~~~l~~l~~~G--~--ir~iGvs--~~~~~~l~~~~~--~~~~~~~~q~~~n~ 131 (290)
.+.||.|+.. ..+++++++++.+..+.. + +-|+=+. |.+.+.+.++.+ .+.+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 4778877521 123788999998865543 2 2233333 566766666665 36778999999998
Q ss_pred cCCC----c-c---hHHHHHHHHhCCceeeeccccc
Q 022889 132 VDMR----P-Q---QKMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 132 ~~~~----~-~---~~~~~~~~~~gi~via~spl~~ 159 (290)
.... + . ....+..+++||.+......|.
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 5431 1 1 2456667889999998877654
No 192
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=24.44 E-value=2.3e+02 Score=25.01 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHhhCCCceeeeecccCCcHHHHHHhh
Q 022889 206 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTN 252 (290)
Q Consensus 206 ~~l~~la~~~~~------s~~q~al~~~l~~~~v~~~l~g~~~~~~~~l~enl 252 (290)
.+|.++|++++. ++.++-..|+.... ...+..|+|+ |+.+-+.+
T Consensus 225 ~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~-~VGItaGAST--P~~ii~eV 274 (281)
T PF02401_consen 225 RKLAEIAKEHGKPTYHIETADELDPEWLKGVK-KVGITAGAST--PDWIIEEV 274 (281)
T ss_dssp HHHHHHHHHCTTCEEEESSGGG--HHHHTT-S-EEEEEE-TTS---HHHHHHH
T ss_pred HHHHHHHHHhCCCEEEeCCccccCHhHhCCCC-EEEEEccCCC--CHHHHHHH
Confidence 689999999874 78899999998876 4567789999 98876643
No 193
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.35 E-value=5.5e+02 Score=23.48 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHH-HcCc---ccEEEcc--CCCHHHHHHHHH--cCCCeeEecccccccCC----Ccch----HHHHHHHH
Q 022889 83 YLDALNHLTDLK-EEGK---IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVVDM----RPQQ----KMAELCQL 146 (290)
Q Consensus 83 ~~e~~~~l~~l~-~~G~---ir~iGvs--~~~~~~l~~~~~--~~~~~~~~q~~~n~~~~----~~~~----~~~~~~~~ 146 (290)
++++++++..+. +.|+ |+++=+. |.+.+.+..+.+ .+.+..++-++||+... .+.. ......++
T Consensus 246 l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~~~~~~ps~e~i~~f~~~l~~ 325 (356)
T PRK14462 246 IESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEGSKFERPSLEDMIKFQDYLNS 325 (356)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 578888887554 4454 4666555 446676666654 25678899999998752 1222 34555677
Q ss_pred hCCceeeeccccc
Q 022889 147 TGVKLITYGTVMG 159 (290)
Q Consensus 147 ~gi~via~spl~~ 159 (290)
+||.+......+.
T Consensus 326 ~gi~vtvR~~~G~ 338 (356)
T PRK14462 326 KGLLCTIRESKGL 338 (356)
T ss_pred CCCcEEEeCCCCC
Confidence 8999988877654
No 194
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=24.31 E-value=2.5e+02 Score=20.71 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=32.1
Q ss_pred ccCCCHHHHHHHHHcCCCeeEecccccccCCCcchHHHHHHHHhCCceeeeccc
Q 022889 104 LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 104 vs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 157 (290)
.+.-+.+.+..+.... +++++-+.----.+....++.++++++||++-.|..-
T Consensus 36 ~~~l~~~~l~~~~~~~-~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 36 LSDLDPEALLPLLAED-RPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred cccCCHHHHHHHHhhC-CCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 3445666777666543 3444333322211344568889999999999998753
No 195
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=24.29 E-value=3.9e+02 Score=24.12 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=36.2
Q ss_pred CchHHHHHHHHhhhhcCCCCceeeeeeeccccCCCCCCCCHHHHHHHHHHHHHhhC-CCcccEEEeecC
Q 022889 9 GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD-VPCLDMLQFHWW 76 (290)
Q Consensus 9 g~sE~~lG~~l~~~~r~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~e~SL~~L~-~d~iDl~~lH~~ 76 (290)
|.+.+.+.+++++.+.. .+......+...+ .--+.+..+|+++++.++ -+..=+|..|..
T Consensus 134 ~s~~~~~~~al~~~~~~------~~i~~I~~~~~~p--~yI~a~a~~I~~~~~~~~~~~~~llfSaHgl 194 (320)
T COG0276 134 GSYVDELARALKELRGQ------PKISTIPDYYDEP--LYIEALADSIREKLAKHPRDDDVLLFSAHGL 194 (320)
T ss_pred HHHHHHHHHHHHhcCCC------CceEEecCccCCh--HHHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Confidence 56677777777654321 1233333332221 235677888888888886 677778888875
No 196
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=24.10 E-value=3.1e+02 Score=20.43 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHhhCC--CcccEEEeecCCCCCccHHHHHHHHHHHHHc
Q 022889 48 TSSIVRESIDVSRRRMDV--PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 96 (290)
Q Consensus 48 ~~~~i~~~~e~SL~~L~~--d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~ 96 (290)
..+.+++.+.++.+.... ...|++++-.+.....+..++.+.|..+.+.
T Consensus 61 ~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~~~~~~~l~~~l~~ll~k 111 (114)
T PRK01732 61 ERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVADLDNRELFELLEKLWRR 111 (114)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 456677777777775532 4579999988876655578888888877653
No 197
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=24.03 E-value=4.7e+02 Score=22.53 Aligned_cols=106 Identities=17% Similarity=0.083 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc--CCCeeE
Q 022889 47 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVS 124 (290)
Q Consensus 47 ~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~ 124 (290)
.+.+.+.+.+++.++ -|-|+||+=. .|. .....++....+..+.+.-. .-|.+-+++++.++++++. | ...+
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~-~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G-~~iI 96 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYG-GLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQG-KCVV 96 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCC-CCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCC-CcEE
Confidence 467778888777775 5999999843 233 22223333333333333212 2478889999999999985 5 2233
Q ss_pred ecccccccCC-CcchHHHHHHHHhCCceeeecccccc
Q 022889 125 NQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 125 ~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl~~G 160 (290)
|-+. .... .....+++.+++.|..++.+..-..|
T Consensus 97 NsIs--~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 97 NSIN--LEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred EeCC--CCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 3322 2210 11347889999999999998654333
No 198
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=23.88 E-value=4.1e+02 Score=22.37 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCcccEEEccC-CCHHHHHHHHHcCCCeeEecccccccCCCcchHHHHHHHHhCCceee
Q 022889 83 YLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 83 ~~e~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
-.++++.+.+.+. =--||..+ .++++++++.+.|-+|.+ .+....+++..|.++||.++.
T Consensus 51 a~e~I~~l~~~~p---~~lIGAGTVL~~~q~~~a~~aGa~fiV--------sP~~~~ev~~~a~~~~ip~~P 111 (211)
T COG0800 51 ALEAIRALAKEFP---EALIGAGTVLNPEQARQAIAAGAQFIV--------SPGLNPEVAKAANRYGIPYIP 111 (211)
T ss_pred HHHHHHHHHHhCc---ccEEccccccCHHHHHHHHHcCCCEEE--------CCCCCHHHHHHHHhCCCcccC
Confidence 3556666665555 22578876 489999999987755543 245567999999999998875
No 199
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=23.63 E-value=3.4e+02 Score=23.69 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=45.1
Q ss_pred hCCCcccEEEeecCC----------CCCccHHHHH-HHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecccccc
Q 022889 63 MDVPCLDMLQFHWWD----------YSNPGYLDAL-NHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSV 131 (290)
Q Consensus 63 L~~d~iDl~~lH~~~----------~~~~~~~e~~-~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~ 131 (290)
+.++.||.+++---| ...+.+.+++ +..+..++.|| .+|+...+.+....+++.|+.+.++.....+
T Consensus 165 ~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk--~~G~~~~~~~~a~~~~~~G~~~v~~g~D~~~ 242 (267)
T PRK10128 165 LDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK--AAGFLAVDPDMAQKCLAWGANFVAVGVDTML 242 (267)
T ss_pred hCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEEcCCCHHHHHHHHHcCCcEEEEChHHHH
Confidence 356788988874321 1122233332 23334677888 5787777888888888888888888888777
Q ss_pred cC
Q 022889 132 VD 133 (290)
Q Consensus 132 ~~ 133 (290)
+.
T Consensus 243 l~ 244 (267)
T PRK10128 243 YT 244 (267)
T ss_pred HH
Confidence 64
No 200
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=23.50 E-value=5.7e+02 Score=23.31 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=38.1
Q ss_pred ccCCCHHHHHHHHHcCCCeeEecccccccCCC-cchHHHHHHHHhCCceeeeccccccc
Q 022889 104 LTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 104 vs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
+...+.+.++.+++.+.+..++..+.|+.-.- .-+++.+.|+++|+.++.=..++.|.
T Consensus 116 vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~ 174 (378)
T TIGR01329 116 VDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPL 174 (378)
T ss_pred eCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccc
Confidence 33345677776665344566667777765322 23578999999999999777665543
No 201
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=23.20 E-value=3.2e+02 Score=20.24 Aligned_cols=50 Identities=12% Similarity=0.098 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHhhCC---CcccEEEeecCCCCCccHHHHHHHHHHHHHc
Q 022889 47 MTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 96 (290)
Q Consensus 47 ~~~~~i~~~~e~SL~~L~~---d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~ 96 (290)
...+.|++.+.+.++.... ...|++++-.+.....++.++...|..|.+.
T Consensus 52 V~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 52 VVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred hhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 4567788888888876643 4579999998877665578888888887665
No 202
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.10 E-value=1.4e+02 Score=24.37 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecccccc
Q 022889 83 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSV 131 (290)
Q Consensus 83 ~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~ 131 (290)
+..++..|--.++.||+-++|+-|-..-.+..+++.. +....|.-.++
T Consensus 7 F~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKdD-rl~qhvPTlHP 54 (193)
T KOG0077|consen 7 FSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHP 54 (193)
T ss_pred HHHHHHHHHHhccCceEEEEeecCCchhhHHHHHccc-cccccCCCcCC
Confidence 4678888888899999999999999999999999843 45555555554
No 203
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=23.08 E-value=42 Score=21.69 Aligned_cols=51 Identities=12% Similarity=0.172 Sum_probs=21.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhhCCCceeeeecccCCcHHHHHHhhhhhc
Q 022889 206 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFM 256 (290)
Q Consensus 206 ~~l~~la~~~~~s~~q~al~~~l~~~~v~~~l~g~~~~~~~~l~enl~a~~ 256 (290)
+.|+++.+..|+|..++|-.--++...++...-|-+..+++.+.....+++
T Consensus 2 ~~lk~~r~~~~lt~~~~a~~~~i~~~~i~~~e~g~~~~~~~~l~~i~~~~~ 52 (64)
T PF12844_consen 2 ERLKELREEKGLTQKDLAEKLGISRSTISKIENGKRKPSVSTLKKIAEALG 52 (64)
T ss_dssp HHHHHHHHHCT--HHHHHHHHTS-HHHHHHHHTTSS--BHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCcCCCHHHHHHHHHHhC
Confidence 456666666666666666533332222222223333323445544444443
No 204
>PF14502 HTH_41: Helix-turn-helix domain
Probab=23.03 E-value=1.1e+02 Score=19.23 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=24.5
Q ss_pred HHHHHHHHHhCCCH--HHHHHHHHhhCCCce
Q 022889 206 QTLKRIASKHGVSI--PVVAVRYILDQPAVA 234 (290)
Q Consensus 206 ~~l~~la~~~~~s~--~q~al~~~l~~~~v~ 234 (290)
+.+.++++++++|. .|-||+++-..+.|.
T Consensus 7 ~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 7 PTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred CCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 57888999999874 799999999988764
No 205
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=22.95 E-value=5.8e+02 Score=23.20 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHH
Q 022889 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 116 (290)
Q Consensus 48 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 116 (290)
+.+.+.+-+.+.++..|....+++++-.-. ... +++++..+.++++.+.+--+|.+|...+.+-..+
T Consensus 108 ~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~-g~g-v~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~l 174 (360)
T TIGR03597 108 NLSKIKEWMKKRAKELGLKPVDIILVSAKK-GNG-IDELLDKIKKARNKKDVYVVGVTNVGKSSLINKL 174 (360)
T ss_pred CHHHHHHHHHHHHHHcCCCcCcEEEecCCC-CCC-HHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHH
Confidence 455666666666777776544666654333 333 7899999988877778899999999887665444
No 206
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=22.89 E-value=2e+02 Score=26.06 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHhCCC--HHHHHHHHHhhCCCceeeeecccCCcHHHHHHhhhhhcCCCCHH-HHHHHHHHHhhCC
Q 022889 200 QFQVLLQTLKRIASKHGVS--IPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDED-DVNSIQEVTKKGK 275 (290)
Q Consensus 200 ~~~~~~~~l~~la~~~~~s--~~q~al~~~l~~~~v~~~l~g~~~~~~~~l~enl~a~~~~L~~e-~~~~l~~~~~~~~ 275 (290)
.+..+...+..++++++.. .++.+.-|.+..+.-..-+.+..+ .....+.|.+ +.+.|.++....+
T Consensus 213 ~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~----------~~~~yp~t~~GQ~~~l~~l~~~v~ 281 (332)
T PF07745_consen 213 TLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGATS----------LISGYPATPQGQADFLRDLINAVK 281 (332)
T ss_dssp -HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSSST----------GGTTS-SSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccccCcccc----------ccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566678889999998864 367777777666654333223221 2234566665 4444555555433
No 207
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=22.83 E-value=90 Score=25.29 Aligned_cols=54 Identities=19% Similarity=0.087 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhhCCCceeeeecccCCcHHHHHHhhhhhcCC
Q 022889 205 LQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLS 258 (290)
Q Consensus 205 ~~~l~~la~~~~~s~~q~al~~~l~~~~v~~~l~g~~~~~~~~l~enl~a~~~~ 258 (290)
-+.++.+.++.|+|..++|=+.-++...++...-|-++.+.+.+...+++++.+
T Consensus 9 g~~l~~~R~~~glt~~elA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~ 62 (185)
T PRK09943 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLS 62 (185)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCC
Confidence 378888888889999888887777766665555565554467777777776654
No 208
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=22.58 E-value=7e+02 Score=24.03 Aligned_cols=91 Identities=14% Similarity=0.137 Sum_probs=47.6
Q ss_pred ccEEEeecCCCCCccHHHHHHHHHHHH------------------HcCcccEEEccC------CCHHHHHHHHH-cCCCe
Q 022889 68 LDMLQFHWWDYSNPGYLDALNHLTDLK------------------EEGKIKTVALTN------FDTERLRIILE-NGIPV 122 (290)
Q Consensus 68 iDl~~lH~~~~~~~~~~e~~~~l~~l~------------------~~G~ir~iGvs~------~~~~~l~~~~~-~~~~~ 122 (290)
++++.+|.|.+........-.+++.++ ..++|.=||.++ .+...+.++++ .|+.+
T Consensus 117 ~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~v 196 (513)
T CHL00076 117 SDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEI 196 (513)
T ss_pred CCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeE
Confidence 689999999765322222222233322 235688888774 24566777776 24443
Q ss_pred eEecc--------------cccccC-CCcchHHHHHHH-HhCCceeeecccc
Q 022889 123 VSNQV--------------QHSVVD-MRPQQKMAELCQ-LTGVKLITYGTVM 158 (290)
Q Consensus 123 ~~~q~--------------~~n~~~-~~~~~~~~~~~~-~~gi~via~spl~ 158 (290)
.++-. .+|++- +.....+.++.+ +.|++++...|++
T Consensus 197 n~v~~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 197 NQIIPEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred EEEECCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 32221 122221 111223455554 4599998878875
No 209
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=22.56 E-value=3.5e+02 Score=20.47 Aligned_cols=49 Identities=2% Similarity=-0.176 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHhhCCC---cccEEEeecCCCCCccHHHHHHHHHHHHHc
Q 022889 48 TSSIVRESIDVSRRRMDVP---CLDMLQFHWWDYSNPGYLDALNHLTDLKEE 96 (290)
Q Consensus 48 ~~~~i~~~~e~SL~~L~~d---~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~ 96 (290)
..+.+++-+.++.+.+..+ -.|++++-.+.....++.++.+.|+.+.+.
T Consensus 63 ~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 63 IRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 4677888888888777653 479999988876555578888888877664
No 210
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=22.54 E-value=1.2e+02 Score=20.35 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhhC
Q 022889 205 LQTLKRIASKHGVSIPVVAVRYILDQ 230 (290)
Q Consensus 205 ~~~l~~la~~~~~s~~q~al~~~l~~ 230 (290)
++.|++||+..|+|.+++.-..-...
T Consensus 23 W~~L~eiA~~~g~s~~~li~~id~~r 48 (67)
T PF13467_consen 23 WDALEEIAAREGLSLNALIAEIDARR 48 (67)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 48999999999999999887765444
No 211
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=22.47 E-value=2.2e+02 Score=21.19 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=26.9
Q ss_pred CcccEEEccCC---CHHHHHHHHHcCCCeeEecccccccCCCcchHHHHHHHHhCCceeeec
Q 022889 97 GKIKTVALTNF---DTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 97 G~ir~iGvs~~---~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 155 (290)
+.+..+=+..- ..+.++++.+.+.+-.++|.. ..+.+++++|+++|+.++.=.
T Consensus 54 ~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g------~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 54 EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG------AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT------S--HHHHHHHHHTT-EEEESS
T ss_pred CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc------hHHHHHHHHHHHcCCEEEeCC
Confidence 45544444431 234444444445555555544 335689999999999988643
No 212
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=22.46 E-value=5.7e+02 Score=22.92 Aligned_cols=92 Identities=15% Similarity=0.193 Sum_probs=61.9
Q ss_pred HHHhhCCCcccEEEeecCCC-----CCccHHHHHHHHHHHHHcCcc-cEEEccCC---CHHHHHHHHHc--CCCeeEecc
Q 022889 59 SRRRMDVPCLDMLQFHWWDY-----SNPGYLDALNHLTDLKEEGKI-KTVALTNF---DTERLRIILEN--GIPVVSNQV 127 (290)
Q Consensus 59 SL~~L~~d~iDl~~lH~~~~-----~~~~~~e~~~~l~~l~~~G~i-r~iGvs~~---~~~~l~~~~~~--~~~~~~~q~ 127 (290)
-.++.| .|++-||-... +.+ ..|+.+.|+++.+.=++ --||=|.. +++.++++.+. |-++-....
T Consensus 159 ~Vk~fg---admvTiHlIsTdPki~D~p-~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSa 234 (403)
T COG2069 159 CVKKFG---ADMVTIHLISTDPKIKDTP-AKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASA 234 (403)
T ss_pred HHHHhC---CceEEEEeecCCccccCCC-HHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeecc
Confidence 345566 46666775432 223 68999999999888776 45677764 57788888773 434444333
Q ss_pred cccccCCCcchHHHHHHHHhCCceeeecccc
Q 022889 128 QHSVVDMRPQQKMAELCQLTGVKLITYGTVM 158 (290)
Q Consensus 128 ~~n~~~~~~~~~~~~~~~~~gi~via~spl~ 158 (290)
..++ . -..+.++++++|=.|++|+++.
T Consensus 235 nldl---D-y~~ia~AA~ky~H~VLswt~~D 261 (403)
T COG2069 235 NLDL---D-YERIAEAALKYDHVVLSWTQMD 261 (403)
T ss_pred cccc---C-HHHHHHHHHhcCceEEEeeccC
Confidence 3333 2 2478999999999999999874
No 213
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=22.45 E-value=2e+02 Score=21.89 Aligned_cols=56 Identities=11% Similarity=0.221 Sum_probs=33.5
Q ss_pred EEEcc---CCCHHHHHHHHH-----cCCCeeEecccccccCCCcchHHHHHHHHhCCceeeecc
Q 022889 101 TVALT---NFDTERLRIILE-----NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 101 ~iGvs---~~~~~~l~~~~~-----~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 156 (290)
.+||. +.+.+.+..++. .++.+..+-.--++-....+..+++.+++.|+++..|++
T Consensus 5 ~vGIGcr~~~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E~~L~~~A~~lg~pl~~~~~ 68 (126)
T PRK07027 5 ALGIGCRRGVPAEQIEAAIRAALAQRPLASADVRVVATLDLKADEAGLLALCARHGWPLRAFSA 68 (126)
T ss_pred EEeeccCCCCCHHHHHHHHHHHHHHcCCCHHHhheeEehhhhcCCHHHHHHHHHhCCCeEEeCH
Confidence 44554 345565555443 334333333333333334567999999999999999975
No 214
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=22.30 E-value=2.8e+02 Score=24.59 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHhhCCCceeeeecccCCcHHHHHHhh
Q 022889 206 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTN 252 (290)
Q Consensus 206 ~~l~~la~~~~~------s~~q~al~~~l~~~~v~~~l~g~~~~~~~~l~enl 252 (290)
.+|.++|++.|. ++.++=..|+.... ...+-.|+|+ |+.|-+++
T Consensus 228 ~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~-~VGvTAGASt--Pd~lV~~V 277 (294)
T COG0761 228 NRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVK-TVGVTAGAST--PDWLVQEV 277 (294)
T ss_pred HHHHHHHHHhCCCeEEeCChHhCCHHHhcCcc-EEEEecCCCC--CHHHHHHH
Confidence 689999999886 67888899998854 4456689998 98887654
No 215
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=22.21 E-value=39 Score=21.75 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=6.2
Q ss_pred HHHHHHhCCCHHHHH
Q 022889 209 KRIASKHGVSIPVVA 223 (290)
Q Consensus 209 ~~la~~~~~s~~q~a 223 (290)
+++..+.|+|..++|
T Consensus 3 ~~~m~~~~it~~~La 17 (63)
T PF13443_consen 3 KELMAERGITQKDLA 17 (63)
T ss_dssp HHHHHHTT--HHHHH
T ss_pred HHHHHHcCCCHHHHH
Confidence 344444555554444
No 216
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=22.20 E-value=2.6e+02 Score=20.43 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=31.4
Q ss_pred CCceeeeecccCCcHHHHHHhhhhhc-----CCCCHHHHHHHHHHHh
Q 022889 231 PAVAGSMIGVRLGLAEHIQDTNAIFM-----LSLDEDDVNSIQEVTK 272 (290)
Q Consensus 231 ~~v~~~l~g~~~~~~~~l~enl~a~~-----~~L~~e~~~~l~~~~~ 272 (290)
|+-+.+++-+++..++.+.+.+.-+. ..|++++.+.|.+++.
T Consensus 54 ~GssAl~~lv~~~~~d~v~~~l~~~gg~v~~t~ls~~~e~~L~~al~ 100 (102)
T PF06897_consen 54 PGSSALFLLVDEATEDKVDAALRKFGGKVLRTSLSEEDEDELQEALD 100 (102)
T ss_pred CCceEEEEEeccCCHHHHHHHHHhcCCEEEeccCCHHHHHHHHHHHh
Confidence 34455666666666899999888776 3799999999988764
No 217
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=21.93 E-value=4.9e+02 Score=24.58 Aligned_cols=70 Identities=10% Similarity=0.128 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCcc-cEEEccCCCHHHHHHHHHcCCCeeEecccccccCCCcchHHHHHHHHhCCceeeeccc
Q 022889 87 LNHLTDLKEEGKI-KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 87 ~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 157 (290)
++.|.+|++...| -..|-+.++.+.+..+++.+ -++++|......--.....+...|+.+|+.+..++..
T Consensus 268 ~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~-avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~v~~h~~~ 338 (441)
T TIGR03247 268 REVMAEFRRATGLPTATNMIATDWRQMGHALQLQ-AVDIPLADPHFWTMQGSVRVAQMCHDWGLTWGSHSNN 338 (441)
T ss_pred HHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhC-CCCEEeccCCcchHHHHHHHHHHHHHcCCEEEEeCCc
Confidence 5566777665444 34466667888888888744 3566666653210112357889999999998887643
No 218
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=21.87 E-value=1.3e+02 Score=26.81 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcc
Q 022889 50 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI 99 (290)
Q Consensus 50 ~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~i 99 (290)
+...+.+++.+++||++ +|.+.-.. + ......+.+.+++|+++|.+
T Consensus 69 ~~~~~~~~~~l~~LgI~-~D~~~~tt-~--~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 69 DKYHEIFKDLFKWLNIS-FDYFIRTT-S--PRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHcCCc-CCCCeeCC-C--HHHHHHHHHHHHHHHHCCCE
Confidence 45678889999999985 67543311 1 11145678899999999998
No 219
>smart00642 Aamy Alpha-amylase domain.
Probab=21.87 E-value=1.1e+02 Score=24.60 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=18.3
Q ss_pred chHHHHHHHHhCCceeeeccccc
Q 022889 137 QQKMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 137 ~~~~~~~~~~~gi~via~spl~~ 159 (290)
-+.+++.|+++||.|+.=-++..
T Consensus 72 ~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 72 FKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHHHCCCEEEEEECCCC
Confidence 35789999999999997666643
No 220
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=21.76 E-value=5.8e+02 Score=22.81 Aligned_cols=75 Identities=9% Similarity=0.087 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCcccEEEccC----CC-----HHHHHHHHHcCCCeeEecccccccCC--CcchHHHHHHHHhCCceeee
Q 022889 86 ALNHLTDLKEEGKIKTVALTN----FD-----TERLRIILENGIPVVSNQVQHSVVDM--RPQQKMAELCQLTGVKLITY 154 (290)
Q Consensus 86 ~~~~l~~l~~~G~ir~iGvs~----~~-----~~~l~~~~~~~~~~~~~q~~~n~~~~--~~~~~~~~~~~~~gi~via~ 154 (290)
+.+.++.+..-..++.+|+.+ .. .+.++.+.+.+.+. ++++.+|=... ....+.++.+++.||.+...
T Consensus 161 L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~-~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~q 239 (321)
T TIGR03821 161 LDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQT-VLVVHINHANEIDAEVADALAKLRNAGITLLNQ 239 (321)
T ss_pred HHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcE-EEEeeCCChHhCcHHHHHHHHHHHHcCCEEEec
Confidence 445555666667777777664 22 23333333334322 22334432111 11246788899999999999
Q ss_pred ccccccc
Q 022889 155 GTVMGGL 161 (290)
Q Consensus 155 spl~~G~ 161 (290)
+++..|+
T Consensus 240 tvllkgi 246 (321)
T TIGR03821 240 SVLLRGV 246 (321)
T ss_pred ceeeCCC
Confidence 9987774
No 221
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=21.56 E-value=6.2e+02 Score=23.05 Aligned_cols=99 Identities=11% Similarity=0.132 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCc-ccEEEccCCCHHHHHHHHHcCCCeeE
Q 022889 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 124 (290)
Q Consensus 46 ~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~ 124 (290)
.++.+... .+-+.|.++|+++|.+- +|... ++-++.+..+.+.++ .+-.+.+......++.+.+.+.+...
T Consensus 18 ~~s~~~k~-~ia~~L~~~Gv~~IEvG---~p~~~----~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (363)
T TIGR02090 18 SLTVEQKV-EIARKLDELGVDVIEAG---FPIAS----EGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIH 89 (363)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEe---CCCCC----hHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEE
Confidence 35555544 44555999999999874 33221 233566666666555 44445566678888888886654333
Q ss_pred ecccccccC------CCc------chHHHHHHHHhCCcee
Q 022889 125 NQVQHSVVD------MRP------QQKMAELCQLTGVKLI 152 (290)
Q Consensus 125 ~q~~~n~~~------~~~------~~~~~~~~~~~gi~vi 152 (290)
+-+..|... +.. -.+.+.+|++.|+.+.
T Consensus 90 i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 90 TFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 322222211 111 1256778999987653
No 222
>TIGR02607 antidote_HigA addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by Pfam model pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair.
Probab=21.48 E-value=2.5e+02 Score=18.67 Aligned_cols=64 Identities=14% Similarity=0.072 Sum_probs=36.5
Q ss_pred HHHH-HHHHHhCCCHHHHHHHHHhhCCCceeeeecccCCcHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 022889 206 QTLK-RIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVT 271 (290)
Q Consensus 206 ~~l~-~la~~~~~s~~q~al~~~l~~~~v~~~l~g~~~~~~~~l~enl~a~~~~L~~e~~~~l~~~~ 271 (290)
+.++ .+.++.|+|..++|-+--.+...++..+-|-+..+++.+.....+++ .+.+.+-.+.+.+
T Consensus 7 ~~i~~~~~~~~~~t~~~lA~~~gis~~tis~~~~g~~~~~~~~~~~l~~~l~--v~~~~l~~~~~~~ 71 (78)
T TIGR02607 7 EILREEFLEPLGLSIRALAKALGVSRSTLSRIVNGRRGITADMALRLAKALG--TSPEFWLNLQNAY 71 (78)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 4555 56667777777776665555555555555554433666666555544 4455555544444
No 223
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=21.43 E-value=3.5e+02 Score=22.20 Aligned_cols=67 Identities=13% Similarity=0.089 Sum_probs=39.7
Q ss_pred HHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEcc-CCCHHHHHHHHHcCCCeeEecccccc
Q 022889 59 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHSV 131 (290)
Q Consensus 59 SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~q~~~n~ 131 (290)
.+..+|.||+=+. ++|..... -..+...++.+.-..+.+||. |.+.+.+..+.+ ...++++|+.-+-
T Consensus 14 ~~~~~g~d~~Gfi--~~~~S~R~---v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~-~~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFI--FYPKSPRY---VSPDQARELVSAVPPKIVGVFVNQSPEEILEIVE-ELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB-----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHH-HCTESEEEE-SGG
T ss_pred HHHHcCCCEEeee--cCCCCCCc---cCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHH-HcCCCEEEECCCC
Confidence 4567899998885 34543221 123344555555444488987 456777777776 3579999987664
No 224
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=21.35 E-value=6.4e+02 Score=23.08 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecccccccCCC-cchHHHHHHHHhCCceeeecccccc
Q 022889 84 LDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 84 ~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl~~G 160 (290)
......+..+...+.+...-+...+.+.++++++.+.+..++..+-|+.-.. .-..+.+.|+++|+.++.=...+.|
T Consensus 101 ~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~ 178 (382)
T TIGR02080 101 GGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSP 178 (382)
T ss_pred HHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 4455555555555544444444556777777765444556666666664322 2357889999999988876666544
No 225
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=21.13 E-value=2.5e+02 Score=26.12 Aligned_cols=75 Identities=8% Similarity=-0.002 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecccccccCCCcchHHHHHHHHhCCceeeecccccc
Q 022889 85 DALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 85 e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G 160 (290)
..-..+..|.+.|.--..|+.+-+-...+.+...+. ..+.+-+|+++......+.....++.++.+++--|++.+
T Consensus 278 ~~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~-~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~ 352 (402)
T PRK09536 278 PAARAVSRLVAAGASVSVGPVPEGDTAAETAARVGC-EAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAAR 352 (402)
T ss_pred cHHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCC-CEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCC
Confidence 355678899999999999999877666666655453 455677899887655567788888889999988888754
No 226
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=21.12 E-value=2.9e+02 Score=20.94 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHcCcccEEEcc
Q 022889 85 DALNHLTDLKEEGKIKTVALT 105 (290)
Q Consensus 85 e~~~~l~~l~~~G~ir~iGvs 105 (290)
..+..|.+..+.|.+..|=|.
T Consensus 52 p~l~~ll~~~~~g~~~~ivv~ 72 (148)
T smart00857 52 PGLQRLLADLRAGDIDVLVVY 72 (148)
T ss_pred HHHHHHHHHHHcCCCCEEEEe
Confidence 344444444444554444443
No 227
>PLN02775 Probable dihydrodipicolinate reductase
Probab=20.93 E-value=5.9e+02 Score=22.54 Aligned_cols=73 Identities=11% Similarity=-0.012 Sum_probs=50.9
Q ss_pred HHHHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecccccc
Q 022889 54 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSV 131 (290)
Q Consensus 54 ~~~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~ 131 (290)
..+++.|..+.-+|.|++.+..- .+ +-+.+.++.+.+.|+--=+|.+.|+.+++..+.+...-+.++-.+||+
T Consensus 66 ~dl~~~l~~~~~~~~~~VvIDFT---~P--~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 66 SEREAVLSSVKAEYPNLIVVDYT---LP--DAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred ccHHHHHHHhhccCCCEEEEECC---Ch--HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 55666676665567887766443 33 667788889999999889999999999888776642224444455554
No 228
>PRK09248 putative hydrolase; Validated
Probab=20.87 E-value=5.2e+02 Score=21.85 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=41.5
Q ss_pred EEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccC---C--CHHH-HHHHHHcCCCeeEeccccccc------CCCcc
Q 022889 70 MLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---F--DTER-LRIILENGIPVVSNQVQHSVV------DMRPQ 137 (290)
Q Consensus 70 l~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~---~--~~~~-l~~~~~~~~~~~~~q~~~n~~------~~~~~ 137 (290)
++.+|+.........+-.+.+.++.+.|.+--+|=-. + .... ++.+.+.+. .+|+..+-+ ...+.
T Consensus 98 i~svH~~~~~~~~~~~~~~~~i~~l~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~---~lEvN~~~l~~~~~g~~~~~ 174 (246)
T PRK09248 98 IAGFHEPVFAPGDKETNTQALINAIKNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNV---ALEINNSSFGHSRKGSEDNC 174 (246)
T ss_pred EEecccCccCCcCHHHHHHHHHHHHhcCCCCEEECcCCCCCcccHHHHHHHHHHhCC---EEEEECCCCccCCCCCcChH
Confidence 4556765322111333444445555778876555332 1 2223 344444454 334433322 11234
Q ss_pred hHHHHHHHHhCCceeeec
Q 022889 138 QKMAELCQLTGVKLITYG 155 (290)
Q Consensus 138 ~~~~~~~~~~gi~via~s 155 (290)
..++..+.+.|+.++.-|
T Consensus 175 ~~~~~~~~~~g~~~~~gS 192 (246)
T PRK09248 175 RAIAALCKKAGVWVALGS 192 (246)
T ss_pred HHHHHHHHHcCCeEEEeC
Confidence 578899999998755533
No 229
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=20.82 E-value=1.6e+02 Score=26.82 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=20.1
Q ss_pred chHHHHHHHHhCCceeeeccccc
Q 022889 137 QQKMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 137 ~~~~~~~~~~~gi~via~spl~~ 159 (290)
.++.+..|+++||.++.+.|...
T Consensus 254 ~e~~L~~ake~~I~~vl~~P~V~ 276 (345)
T PF07611_consen 254 LEKFLKLAKENGIPVVLWWPKVS 276 (345)
T ss_pred HHHHHHHHHHcCCcEEEEEeccC
Confidence 35889999999999999999754
No 230
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=20.59 E-value=4.3e+02 Score=20.76 Aligned_cols=50 Identities=6% Similarity=0.010 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHhhC--CCcccEEEeecCCCCCccHHHHHHHHHHHHHc
Q 022889 47 MTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 96 (290)
Q Consensus 47 ~~~~~i~~~~e~SL~~L~--~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~ 96 (290)
..+..|++.+.++++.+. ....|++++-.+.....+..++.+.|..|.+.
T Consensus 63 V~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 63 VGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 356778888888777553 23459999988876655688888888888776
No 231
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=20.57 E-value=2.4e+02 Score=21.48 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCccCCcc
Q 022889 257 LSLDEDDVNSIQEVTKKGKDLLGVIGDCG 285 (290)
Q Consensus 257 ~~L~~e~~~~l~~~~~~~~~~~~~~~~~~ 285 (290)
..|+++|++.|.++......+-...-+|+
T Consensus 100 ~~ls~eele~L~~li~~~~~~~~~~~~~~ 128 (130)
T TIGR02698 100 SPLSQTDIEKLEKLLSEKKSTAVEEVPCN 128 (130)
T ss_pred CCCCHHHHHHHHHHHHhcccCCCccccCC
Confidence 57999999999999988777666666664
No 232
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=20.47 E-value=2.3e+02 Score=25.94 Aligned_cols=62 Identities=18% Similarity=0.048 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHhhCCCcccEEEeecC-----CCCCccHHHHHHHHHHHHHcCcccEEEccCCCH
Q 022889 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWW-----DYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT 109 (290)
Q Consensus 48 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~~-----~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~~~~ 109 (290)
-.+.+.+++++.++......+|++++-.. .+.......+.++|..|.+.|.--++=..||+.
T Consensus 21 r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~ 87 (390)
T COG0420 21 RLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHDS 87 (390)
T ss_pred chHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCCCc
Confidence 35678899999999999999999888543 222222455666677777655444444446654
No 233
>cd00093 HTH_XRE Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.
Probab=20.47 E-value=1.1e+02 Score=17.83 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=8.5
Q ss_pred HHHHHHhCCCHHHHHHH
Q 022889 209 KRIASKHGVSIPVVAVR 225 (290)
Q Consensus 209 ~~la~~~~~s~~q~al~ 225 (290)
....+..++|..++|-.
T Consensus 5 ~~~~~~~~~s~~~~a~~ 21 (58)
T cd00093 5 KELRKEKGLTQEELAEK 21 (58)
T ss_pred HHHHHHcCCCHHHHHHH
Confidence 33344455566555544
No 234
>PRK06361 hypothetical protein; Provisional
Probab=20.46 E-value=4.8e+02 Score=21.35 Aligned_cols=124 Identities=12% Similarity=0.120 Sum_probs=70.6
Q ss_pred HHHHHHhhCCCcccEEEeecCCCCCccHHHHHHHHHHHHHcCcccEEEccC-CCHHHHHHHHHcCCCeeEecccccccCC
Q 022889 56 IDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQVQHSVVDM 134 (290)
Q Consensus 56 ~e~SL~~L~~d~iDl~~lH~~~~~~~~~~e~~~~l~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~q~~~n~~~~ 134 (290)
+...+.+++ .|+..+|......+ .. ...-.++.+.|.+.-+|=-. .....++.+.+.+..+.++-. .+ .+
T Consensus 77 ~~~~~~~~~---~~~~svH~~~~~~~-~~--~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~lEin~~-~~--~~ 147 (212)
T PRK06361 77 LAKKARDLG---AEIVVVHGETIVEP-VE--EGTNLAAIECEDVDILAHPGLITEEEAELAAENGVFLEITAR-KG--HS 147 (212)
T ss_pred HHHHHHHCC---CEEEEECCCCcchh-hh--hhhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCeEEEEECC-CC--cc
Confidence 334555554 55557886543222 11 11114577888876666443 234555555555655555431 11 23
Q ss_pred CcchHHHHHHHHhCCceeeecccccccccccccCCCCCCCCCCCCCCCchhhHhhhhhhccCCchhHHHHHHHHHHHHHH
Q 022889 135 RPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASK 214 (290)
Q Consensus 135 ~~~~~~~~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~ 214 (290)
.....+++.+++.|+.++..|....- +... ..+.+..++.+
T Consensus 148 ~~~~~~l~~a~~~gi~vv~~SDaH~~--------------------------------------~d~~-~~~~~~~i~~~ 188 (212)
T PRK06361 148 LTNGHVARIAREAGAPLVINTDTHAP--------------------------------------SDLI-TYEFARKVALG 188 (212)
T ss_pred cchHHHHHHHHHhCCcEEEECCCCCH--------------------------------------HHHH-HHHHHHHHHcC
Confidence 34457999999999998776644210 1111 24788888888
Q ss_pred hCCCHHHHHHHHH
Q 022889 215 HGVSIPVVAVRYI 227 (290)
Q Consensus 215 ~~~s~~q~al~~~ 227 (290)
.|.+..++--.+.
T Consensus 189 ~gl~~~~v~~~~~ 201 (212)
T PRK06361 189 AGLTEKELEEALE 201 (212)
T ss_pred CCCCHHHHHHHHH
Confidence 8888888655443
No 235
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=20.13 E-value=5.3e+02 Score=24.46 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=44.1
Q ss_pred HHHHHcCcccEEEccCCCHHHHHHHHH-----c-CCC-eeEecccccccCCCcchHHHHHHHHhCCceeeecc
Q 022889 91 TDLKEEGKIKTVALTNFDTERLRIILE-----N-GIP-VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 91 ~~l~~~G~ir~iGvs~~~~~~l~~~~~-----~-~~~-~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 156 (290)
..+-+.|-...+|....++++++..+. . +-+ +-+|-+ .+.-+...+..+++.|.++++.++..+-
T Consensus 37 aAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e~~~v~l~l~~~V~~veasa 108 (444)
T TIGR02814 37 IAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALEWGLVDLLLRHGVRIVEASA 108 (444)
T ss_pred HHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccHHHHHHHHHHcCCCEEEecc
Confidence 355678999999999999988877664 1 213 666554 2222222345789999999999887653
No 236
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.04 E-value=5.6e+02 Score=23.10 Aligned_cols=68 Identities=7% Similarity=-0.001 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCcc-cEEEccCCCHHHHHHHHHcCCCeeEecccccccCC-CcchHHHHHHHHhCCceeeec
Q 022889 87 LNHLTDLKEEGKI-KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 87 ~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~s 155 (290)
++.+.+|++.--| -+.|=+.++.+.+..+++.+ -++++|+..+.+-. ..-.++...|+.+|+.++.+.
T Consensus 226 ~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~-~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~h~ 295 (355)
T cd03321 226 YEGHARIASALRTPVQMGENWLGPEEMFKALSAG-ACDLVMPDLMKIGGVTGWLRASALAEQAGIPMSSHL 295 (355)
T ss_pred HHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhC-CCCeEecCHhhhCCHHHHHHHHHHHHHcCCeecccc
Confidence 4556666665332 34555567788888887743 46777777665311 112478899999999986543
No 237
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=20.03 E-value=1.1e+02 Score=26.22 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH
Q 022889 202 QVLLQTLKRIASKHGVSIPVVAVRYI 227 (290)
Q Consensus 202 ~~~~~~l~~la~~~~~s~~q~al~~~ 227 (290)
..++.++..||.-|++++.+++..|-
T Consensus 9 ~~vl~kl~slc~~~~ls~edL~~kWe 34 (253)
T PF08418_consen 9 PDVLEKLQSLCRLYNLSAEDLFYKWE 34 (253)
T ss_dssp HHHHHHHHTHHHHST--HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45668999999999999999999884
No 238
>PRK13561 putative diguanylate cyclase; Provisional
Probab=20.01 E-value=6.1e+02 Score=24.93 Aligned_cols=102 Identities=20% Similarity=0.207 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhhCCCcccEEEeecCCCC-CccHHHHHHHHHHHHHcCcccEEEccCCC--HHHHHHHHH-cCCCeeEec
Q 022889 51 IVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFD--TERLRIILE-NGIPVVSNQ 126 (290)
Q Consensus 51 ~i~~~~e~SL~~L~~d~iDl~~lH~~~~~-~~~~~e~~~~l~~l~~~G~ir~iGvs~~~--~~~l~~~~~-~~~~~~~~q 126 (290)
.+...+.+.|++.+.+- ..+.+--+... ..+.+.+...+.+|++.|- .+++..|. ...+..+.. ...+++.+-
T Consensus 501 ~f~~~l~~~l~~~~~~~-~~l~lEi~E~~~~~~~~~~~~~~~~l~~~G~--~i~lddfG~g~ssl~~L~~l~~l~~d~lK 577 (651)
T PRK13561 501 NMVADMLELLTRYRIQP-GTLILEVTESRRIDDPHAAVAILRPLRNAGV--RVALDDFGMGYAGLRQLQHMKSLPIDVLK 577 (651)
T ss_pred hHHHHHHHHHHHcCCCh-HHEEEEEchhhhhcCHHHHHHHHHHHHHCCC--EEEEECCCCCcccHHHHhhcCCCCCcEEE
Confidence 35566666666666532 22222222211 1125678899999999998 67777764 234444433 135778877
Q ss_pred ccccccCCCc-----chHHHHHHHHhCCceeeec
Q 022889 127 VQHSVVDMRP-----QQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 127 ~~~n~~~~~~-----~~~~~~~~~~~gi~via~s 155 (290)
+.-+++..-. -+.++..|+..|+.++|=.
T Consensus 578 iD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAeg 611 (651)
T PRK13561 578 IDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAEG 611 (651)
T ss_pred ECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEec
Confidence 7766653221 2467889999999999844
Done!