Query 022890
Match_columns 290
No_of_seqs 222 out of 1725
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:54:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03407 Band_7_4 A subgroup of 100.0 2E-54 4.3E-59 380.9 32.1 262 14-277 1-262 (262)
2 KOG2620 Prohibitins and stomat 100.0 7.4E-52 1.6E-56 346.0 15.9 284 1-287 1-296 (301)
3 PRK11029 FtsH protease regulat 100.0 1.3E-47 2.8E-52 344.3 32.2 258 4-277 17-327 (334)
4 TIGR01933 hflK HflK protein. H 100.0 2E-46 4.3E-51 330.3 32.5 248 7-266 1-252 (261)
5 PRK10930 FtsH protease regulat 100.0 1.7E-46 3.8E-51 345.6 32.6 248 4-264 94-345 (419)
6 TIGR01932 hflC HflC protein. H 100.0 3.7E-46 8E-51 335.8 32.0 257 3-275 16-315 (317)
7 cd03405 Band_7_HflC Band_7_Hfl 100.0 1.5E-45 3.2E-50 321.5 30.0 234 7-251 1-241 (242)
8 cd03404 Band_7_HflK Band_7_Hfl 100.0 4.6E-44 1E-48 316.1 29.6 239 4-252 12-266 (266)
9 COG0330 HflC Membrane protease 100.0 2.2E-40 4.8E-45 296.4 30.4 256 4-268 18-280 (291)
10 cd03403 Band_7_stomatin_like B 100.0 4.9E-40 1.1E-44 281.7 27.9 213 12-263 1-214 (215)
11 cd03401 Band_7_prohibitin Band 100.0 2.3E-37 4.9E-42 261.5 22.4 191 6-208 1-195 (196)
12 cd03406 Band_7_3 A subgroup of 100.0 5.8E-37 1.3E-41 269.2 24.2 193 4-201 2-210 (280)
13 cd03402 Band_7_2 A subgroup of 100.0 3.8E-35 8.2E-40 250.6 21.1 171 6-183 1-180 (219)
14 KOG2621 Prohibitins and stomat 100.0 4.2E-35 9.1E-40 248.4 13.8 220 6-266 51-274 (288)
15 smart00244 PHB prohibitin homo 100.0 1.3E-30 2.8E-35 212.7 19.5 156 5-166 1-159 (160)
16 PF01145 Band_7: SPFH domain / 100.0 2E-31 4.4E-36 221.3 14.8 169 11-183 2-178 (179)
17 KOG3090 Prohibitin-like protei 99.9 2E-26 4.3E-31 189.2 18.2 235 3-266 34-274 (290)
18 KOG3083 Prohibitin [Posttransl 99.9 1.3E-24 2.8E-29 178.4 12.7 236 5-268 25-266 (271)
19 cd03408 Band_7_5 A subgroup of 99.9 9.5E-22 2.1E-26 167.4 15.7 156 5-166 14-206 (207)
20 KOG2668 Flotillins [Intracellu 99.9 2.5E-19 5.5E-24 156.1 24.6 150 11-164 4-165 (428)
21 KOG2962 Prohibitin-related mem 99.8 1.8E-19 3.8E-24 149.0 19.1 188 11-200 25-227 (322)
22 cd03400 Band_7_1 A subgroup of 99.8 1.6E-19 3.4E-24 141.4 12.2 119 48-166 2-123 (124)
23 COG2268 Uncharacterized protei 99.8 1.4E-16 3E-21 149.0 22.3 189 6-197 33-245 (548)
24 cd03399 Band_7_flotillin Band_ 99.8 6.8E-18 1.5E-22 132.9 11.0 114 49-164 2-125 (128)
25 cd02106 Band_7 The band 7 doma 99.7 3.5E-15 7.7E-20 115.2 14.6 112 53-166 6-120 (121)
26 PF13421 Band_7_1: SPFH domain 99.5 8.4E-12 1.8E-16 106.0 18.1 156 6-167 15-207 (211)
27 PTZ00491 major vault protein; 99.0 1.9E-07 4.2E-12 91.7 22.6 151 11-164 466-650 (850)
28 COG4260 Membrane protease subu 98.9 8.3E-08 1.8E-12 82.6 14.8 156 6-167 40-234 (345)
29 cd03405 Band_7_HflC Band_7_Hfl 97.4 0.00065 1.4E-08 59.1 8.0 53 168-220 174-226 (242)
30 PF12127 YdfA_immunity: SigmaW 97.3 0.0059 1.3E-07 52.9 12.6 108 49-162 120-228 (316)
31 PRK13665 hypothetical protein; 97.1 0.0049 1.1E-07 53.2 9.4 108 49-163 125-234 (316)
32 TIGR01932 hflC HflC protein. H 96.9 0.0078 1.7E-07 54.6 10.3 37 186-222 225-261 (317)
33 PRK11029 FtsH protease regulat 96.8 0.007 1.5E-07 55.1 8.8 72 148-226 203-275 (334)
34 TIGR01933 hflK HflK protein. H 96.8 0.016 3.5E-07 51.0 10.6 96 126-222 120-225 (261)
35 cd03404 Band_7_HflK Band_7_Hfl 96.5 0.019 4.1E-07 50.6 9.0 90 129-226 142-234 (266)
36 PF11978 MVP_shoulder: Shoulde 96.4 0.023 4.9E-07 43.1 7.7 95 61-155 10-116 (118)
37 PRK10930 FtsH protease regulat 96.4 0.038 8.3E-07 51.9 11.0 35 174-208 273-307 (419)
38 cd03407 Band_7_4 A subgroup of 96.1 0.023 5E-07 50.1 7.5 51 177-227 152-202 (262)
39 COG2268 Uncharacterized protei 94.8 0.37 8E-06 46.4 11.1 76 190-267 410-493 (548)
40 COG1580 FliL Flagellar basal b 94.5 0.34 7.3E-06 39.3 8.7 80 67-154 76-157 (159)
41 KOG2620 Prohibitins and stomat 94.3 0.09 2E-06 45.5 5.2 48 168-215 179-226 (301)
42 COG0330 HflC Membrane protease 92.4 0.53 1.1E-05 42.0 7.4 50 176-226 181-230 (291)
43 COG4864 Uncharacterized protei 91.9 2.7 5.9E-05 35.7 10.4 92 63-161 139-231 (328)
44 TIGR01147 V_ATP_synt_G vacuola 90.3 3.9 8.4E-05 31.2 9.1 40 162-201 7-46 (113)
45 PRK01558 V-type ATP synthase s 88.4 14 0.0003 31.0 12.9 51 159-209 8-60 (198)
46 PRK06568 F0F1 ATP synthase sub 88.2 12 0.00026 30.1 11.6 10 240-249 131-140 (154)
47 KOG2668 Flotillins [Intracellu 86.9 3.2 6.9E-05 37.7 7.5 87 176-267 294-386 (428)
48 PRK01558 V-type ATP synthase s 86.1 5.6 0.00012 33.5 8.5 30 180-209 20-49 (198)
49 cd03401 Band_7_prohibitin Band 85.6 2.5 5.4E-05 35.1 6.1 25 195-219 171-195 (196)
50 PF03748 FliL: Flagellar basal 85.0 13 0.00027 27.1 10.3 51 101-153 44-96 (99)
51 PRK05697 flagellar basal body- 85.0 6.9 0.00015 30.9 7.9 53 101-153 78-134 (137)
52 PRK08404 V-type ATP synthase s 84.6 15 0.00032 27.5 9.3 37 161-197 3-39 (103)
53 PRK06654 fliL flagellar basal 84.4 9 0.0002 31.7 8.5 83 61-153 92-176 (181)
54 PRK01005 V-type ATP synthase s 83.7 26 0.00056 29.7 12.3 44 169-212 25-68 (207)
55 PRK07718 fliL flagellar basal 82.2 3.8 8.2E-05 32.5 5.5 51 101-153 87-139 (142)
56 PRK02292 V-type ATP synthase s 81.6 29 0.00062 28.7 11.7 29 169-197 12-40 (188)
57 PRK04057 30S ribosomal protein 81.3 18 0.00038 30.6 9.4 82 60-150 100-183 (203)
58 cd03403 Band_7_stomatin_like B 80.3 3.8 8.3E-05 34.6 5.3 28 189-216 154-181 (215)
59 PRK08404 V-type ATP synthase s 79.9 16 0.00034 27.3 7.9 32 179-210 36-67 (103)
60 cd03406 Band_7_3 A subgroup of 79.8 15 0.00031 32.8 8.9 100 99-211 94-209 (280)
61 PRK12785 fliL flagellar basal 78.7 14 0.00031 30.1 7.9 51 101-153 111-163 (166)
62 PRK07021 fliL flagellar basal 78.6 24 0.00051 28.6 9.2 53 101-153 103-159 (162)
63 PRK02292 V-type ATP synthase s 78.3 13 0.00028 30.8 7.8 9 244-252 101-109 (188)
64 TIGR01147 V_ATP_synt_G vacuola 76.8 23 0.0005 27.0 7.9 38 174-211 8-45 (113)
65 KOG3083 Prohibitin [Posttransl 74.2 3.5 7.6E-05 35.1 3.2 53 155-208 179-231 (271)
66 PF03179 V-ATPase_G: Vacuolar 73.7 8.7 0.00019 28.6 5.0 39 163-201 6-44 (105)
67 COG2811 NtpF Archaeal/vacuolar 73.3 37 0.0008 25.6 10.6 39 162-200 8-46 (108)
68 PRK08455 fliL flagellar basal 73.1 10 0.00022 31.5 5.7 51 101-153 127-179 (182)
69 KOG3090 Prohibitin-like protei 71.0 7.9 0.00017 33.0 4.5 63 143-207 179-241 (290)
70 TIGR02926 AhaH ATP synthase ar 70.6 32 0.0007 24.5 7.2 29 169-197 7-35 (85)
71 PRK06231 F0F1 ATP synthase sub 69.8 67 0.0015 27.1 10.4 9 115-123 72-80 (205)
72 PRK09174 F0F1 ATP synthase sub 69.3 69 0.0015 27.1 10.4 17 115-131 77-94 (204)
73 PRK05696 fliL flagellar basal 68.4 16 0.00034 29.9 5.8 53 101-153 111-167 (170)
74 PF01015 Ribosomal_S3Ae: Ribos 68.3 37 0.00081 28.5 8.1 79 61-153 107-187 (194)
75 PRK01005 V-type ATP synthase s 66.5 80 0.0017 26.8 11.8 36 169-204 36-71 (207)
76 PF03179 V-ATPase_G: Vacuolar 65.9 25 0.00055 26.1 6.1 35 176-210 8-42 (105)
77 TIGR03321 alt_F1F0_F0_B altern 65.3 89 0.0019 27.1 10.3 37 175-211 79-115 (246)
78 PRK08475 F0F1 ATP synthase sub 64.3 77 0.0017 25.7 10.4 10 114-123 45-54 (167)
79 PTZ00491 major vault protein; 63.4 1.3E+02 0.0028 31.1 11.9 10 73-82 561-570 (850)
80 KOG0742 AAA+-type ATPase [Post 63.0 69 0.0015 30.4 9.3 11 242-252 254-264 (630)
81 COG1390 NtpE Archaeal/vacuolar 62.7 92 0.002 26.1 11.6 16 207-222 70-85 (194)
82 PRK14472 F0F1 ATP synthase sub 62.6 84 0.0018 25.6 10.4 9 115-123 42-50 (175)
83 CHL00118 atpG ATP synthase CF0 62.6 79 0.0017 25.3 10.4 8 116-123 47-54 (156)
84 CHL00118 atpG ATP synthase CF0 62.3 80 0.0017 25.3 10.3 8 190-197 85-92 (156)
85 PRK08476 F0F1 ATP synthase sub 62.2 76 0.0016 25.0 9.1 10 115-124 31-40 (141)
86 PRK13453 F0F1 ATP synthase sub 62.2 86 0.0019 25.6 10.3 10 114-123 41-50 (173)
87 PRK13428 F0F1 ATP synthase sub 61.4 1.3E+02 0.0028 28.7 11.3 16 238-253 144-159 (445)
88 KOG1772 Vacuolar H+-ATPase V1 61.3 67 0.0015 24.1 9.2 38 163-200 8-45 (108)
89 CHL00019 atpF ATP synthase CF0 61.1 93 0.002 25.6 10.4 21 112-132 45-66 (184)
90 COG2811 NtpF Archaeal/vacuolar 61.1 63 0.0014 24.4 7.2 60 166-225 23-88 (108)
91 PRK13460 F0F1 ATP synthase sub 59.5 96 0.0021 25.3 10.4 28 179-206 94-121 (173)
92 TIGR03321 alt_F1F0_F0_B altern 59.3 1.2E+02 0.0026 26.3 10.4 13 239-251 148-160 (246)
93 KOG2962 Prohibitin-related mem 58.2 80 0.0017 27.2 8.2 17 189-205 205-221 (322)
94 PRK13461 F0F1 ATP synthase sub 58.0 96 0.0021 24.8 10.4 9 115-123 29-37 (159)
95 PF06188 HrpE: HrpE/YscL/FliH 57.0 1.1E+02 0.0025 25.4 10.3 25 176-200 35-59 (191)
96 PRK14475 F0F1 ATP synthase sub 56.9 1E+02 0.0023 24.9 10.3 16 115-130 34-50 (167)
97 PRK13454 F0F1 ATP synthase sub 56.7 1.1E+02 0.0024 25.2 10.4 10 115-124 55-64 (181)
98 PLN03086 PRLI-interacting fact 56.3 52 0.0011 32.4 7.7 11 255-265 89-99 (567)
99 PF06188 HrpE: HrpE/YscL/FliH 55.5 45 0.00098 27.8 6.4 27 168-194 38-64 (191)
100 PRK14474 F0F1 ATP synthase sub 55.4 1.4E+02 0.0031 26.0 10.4 34 176-209 80-113 (250)
101 PRK13428 F0F1 ATP synthase sub 55.0 2E+02 0.0043 27.5 12.2 16 116-131 26-42 (445)
102 PRK09098 type III secretion sy 54.6 64 0.0014 27.9 7.4 34 173-206 41-74 (233)
103 COG1890 RPS1A Ribosomal protei 54.5 1.3E+02 0.0029 25.4 10.3 87 56-151 104-192 (214)
104 PRK14471 F0F1 ATP synthase sub 54.5 1.1E+02 0.0024 24.5 10.4 9 115-123 32-40 (164)
105 PRK14475 F0F1 ATP synthase sub 53.6 1.2E+02 0.0026 24.5 10.4 6 246-251 136-141 (167)
106 PRK09098 type III secretion sy 52.3 88 0.0019 27.0 7.9 29 171-199 50-78 (233)
107 PRK07352 F0F1 ATP synthase sub 52.2 1.3E+02 0.0028 24.5 9.4 21 111-131 39-60 (174)
108 PRK09173 F0F1 ATP synthase sub 51.7 1.2E+02 0.0027 24.1 9.3 25 178-202 64-88 (159)
109 PRK06231 F0F1 ATP synthase sub 51.2 1.5E+02 0.0032 25.0 10.4 8 245-252 173-180 (205)
110 PRK14473 F0F1 ATP synthase sub 50.9 1.3E+02 0.0028 24.2 10.4 9 115-123 32-40 (164)
111 PRK13460 F0F1 ATP synthase sub 50.0 1.4E+02 0.003 24.3 10.3 9 115-123 40-48 (173)
112 PRK05759 F0F1 ATP synthase sub 49.5 1.2E+02 0.0025 24.1 7.8 9 115-123 28-36 (156)
113 TIGR02926 AhaH ATP synthase ar 48.9 95 0.0021 22.0 8.6 21 181-201 8-28 (85)
114 PRK14474 F0F1 ATP synthase sub 47.4 1.9E+02 0.0042 25.2 13.0 13 239-251 148-160 (250)
115 PRK06568 F0F1 ATP synthase sub 46.8 1.5E+02 0.0033 23.8 10.4 23 178-200 66-88 (154)
116 PRK13455 F0F1 ATP synthase sub 46.3 1.7E+02 0.0036 24.1 10.1 16 115-130 51-67 (184)
117 CHL00019 atpF ATP synthase CF0 44.5 1.8E+02 0.0038 23.9 10.4 6 191-196 114-119 (184)
118 PRK07353 F0F1 ATP synthase sub 43.2 1.5E+02 0.0033 22.9 10.3 8 116-123 30-37 (140)
119 PRK13454 F0F1 ATP synthase sub 41.5 2E+02 0.0043 23.7 10.3 12 180-191 95-106 (181)
120 PRK13455 F0F1 ATP synthase sub 41.4 2E+02 0.0043 23.6 10.3 7 245-251 152-158 (184)
121 PRK15322 invasion protein OrgB 37.8 2.5E+02 0.0054 23.7 11.2 31 232-266 91-121 (210)
122 PRK06669 fliH flagellar assemb 36.9 2.2E+02 0.0049 25.1 8.3 37 165-201 82-118 (281)
123 PRK06669 fliH flagellar assemb 36.6 3E+02 0.0065 24.3 9.8 6 246-251 197-202 (281)
124 PRK09173 F0F1 ATP synthase sub 36.1 2.2E+02 0.0048 22.6 9.7 8 116-123 27-34 (159)
125 COG0711 AtpF F0F1-type ATP syn 34.3 2.5E+02 0.0053 22.6 10.3 9 115-123 30-38 (161)
126 PTZ00399 cysteinyl-tRNA-synthe 33.9 4.7E+02 0.01 26.4 10.7 37 130-166 519-560 (651)
127 PRK12613 galactose-6-phosphate 33.0 74 0.0016 25.3 4.0 32 127-158 11-42 (141)
128 TIGR03825 FliH_bacil flagellar 29.2 1.8E+02 0.0038 25.4 6.2 7 143-149 20-26 (255)
129 PRK14471 F0F1 ATP synthase sub 28.2 3.1E+02 0.0068 21.9 10.4 6 246-251 134-139 (164)
130 COG1390 NtpE Archaeal/vacuolar 27.2 3.7E+02 0.0081 22.5 10.3 25 202-226 54-78 (194)
131 PHA00448 hypothetical protein 26.4 2.2E+02 0.0047 19.4 5.5 6 192-197 28-33 (70)
132 KOG2007 Cysteinyl-tRNA synthet 24.7 3E+02 0.0065 26.8 7.1 10 138-147 504-513 (586)
133 TIGR00689 rpiB_lacA_lacB sugar 24.3 66 0.0014 25.6 2.4 30 128-157 10-42 (144)
134 PRK15322 invasion protein OrgB 24.1 2.4E+02 0.0051 23.9 5.6 26 177-202 18-43 (210)
135 PF02502 LacAB_rpiB: Ribose/Ga 23.5 2.2E+02 0.0048 22.4 5.2 27 128-154 11-37 (140)
136 TIGR01120 rpiB ribose 5-phosph 22.8 1.5E+02 0.0032 23.6 4.1 31 127-157 10-43 (143)
137 PF05103 DivIVA: DivIVA protei 22.5 29 0.00062 26.6 0.0 20 181-200 84-103 (131)
138 COG4396 Mu-like prophage host- 22.3 1.2E+02 0.0026 23.9 3.3 46 72-131 93-138 (170)
139 COG0806 RimM RimM protein, req 22.0 99 0.0022 25.4 3.1 27 32-59 141-167 (174)
140 PF03780 Asp23: Asp23 family; 21.8 1.5E+02 0.0033 21.6 3.9 17 65-81 57-73 (108)
141 PF05979 DUF896: Bacterial pro 21.4 76 0.0017 21.6 1.9 29 238-266 28-56 (65)
142 PRK06569 F0F1 ATP synthase sub 20.4 4.6E+02 0.01 21.1 10.2 70 157-226 33-102 (155)
No 1
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=2e-54 Score=380.88 Aligned_cols=262 Identities=60% Similarity=0.908 Sum_probs=250.9
Q ss_pred CCcEEEEEEcCcccceeCCcceeeccccceeEEEeeeeeEEEeeeCCceeecCCcEEEEEEEEEEEEecCchhhhhhhcC
Q 022890 14 QASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDNVFVQLLCSIQYRIVRANADDAFYELQ 93 (290)
Q Consensus 14 ~g~~~Vv~~~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~ 93 (290)
+|++|||++||+++++++||+||++||+ +++...++++.++++++.+++|+|++.|.++++++|||.|+++.+++|++.
T Consensus 1 q~~~~Vv~rfGk~~~~l~pGlhf~~P~i-~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~ 79 (262)
T cd03407 1 QSQVAIIERFGKFFKVAWPGCHFVIPLV-ETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKLG 79 (262)
T ss_pred CcEEEEEeecCcccccCCCCeEEEeccc-cceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcC
Confidence 5899999999999999999999999999 887658999999999988899999999999999999999877779999999
Q ss_pred ChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHHHHHHHHH
Q 022890 94 NPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQ 173 (290)
Q Consensus 94 ~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~~~Ae~~~ 173 (290)
++...|.+.+++++|+++|++++++++++|+.|+..+.+.+++.+++|||.|++|.|++|+||+++.++|++++.|++++
T Consensus 80 ~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~ 159 (262)
T cd03407 80 NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQR 159 (262)
T ss_pred CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHhhc
Q 022890 174 LASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGN 253 (290)
Q Consensus 174 ~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~ 253 (290)
++.+.+||++++..+..|++++++.+++|+|+|++.++.|+|+++++..+.+++...++|+++++++.++|+|+++++++
T Consensus 160 ~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~ 239 (262)
T cd03407 160 VAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR 239 (262)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998866778899999999999999999999
Q ss_pred CCCCcEEEecCCCCCcccHHHHHH
Q 022890 254 SSNNTTVFLPHGPGHVRDISDQIR 277 (290)
Q Consensus 254 ~~~~~~v~lp~~~~~~~~~~~~~~ 277 (290)
++| |++++|.+.+++.+++.+|+
T Consensus 240 ~~~-kviv~p~~~~~~~~~~~~~~ 262 (262)
T cd03407 240 SSS-TVVFRPHGPGGAQDIYAQIR 262 (262)
T ss_pred CCC-CEEEecCCCccHHHHHHhcC
Confidence 876 99999999999999998873
No 2
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=7.4e-52 Score=346.04 Aligned_cols=284 Identities=40% Similarity=0.621 Sum_probs=262.6
Q ss_pred CCccccceeeeecCCcEEEEEEcCcccceeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEE
Q 022890 1 MGNSFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYR 79 (290)
Q Consensus 1 ~g~~~~~~~~~V~~g~~~Vv~~~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yr 79 (290)
||..+||.-..||+.+++|+.||||++++++||+||++|++ +++.+..+++...+..+. +..|+||+.++++++++||
T Consensus 1 ~g~~~n~vi~~VpQ~~a~VvER~GkF~~iLePG~~fl~p~~-d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~r 79 (301)
T KOG2620|consen 1 MGNATNTVIRFVPQQEAAVVERFGKFHRILEPGLHFLPPVI-DKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYR 79 (301)
T ss_pred CCCcceeeEEeechhHhHHHHHhhhhhhhcCCcceechhhh-hhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEE
Confidence 68888888223999999999999999999999999999999 788778887776666666 9999999999999999999
Q ss_pred EecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHH
Q 022890 80 IVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAV 159 (290)
Q Consensus 80 I~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v 159 (290)
|.+|...+++|.++||+..|..+++..+|+.++++++|.++..|+.|+..+.+.|++..+.||++|....|+||.||+.+
T Consensus 80 v~dp~~~dAsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V 159 (301)
T KOG2620|consen 80 VVDPYADDASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSV 159 (301)
T ss_pred EecccccccccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHH
Confidence 99755555999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccC----------
Q 022890 160 RKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEG---------- 229 (290)
Q Consensus 160 ~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~---------- 229 (290)
.++|+.+..|+|.+++++.++|++++..|++||+++++.++..+|.+..+..++.|+++++..++++-+.
T Consensus 160 ~~AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~ 239 (301)
T KOG2620|consen 160 KRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLVMDLK 239 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987442
Q ss_pred -CChHHHHHHHHHHHHHHHHHHhhcCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhhh
Q 022890 230 -ASAKEVMDLIMITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAAQ 287 (290)
Q Consensus 230 -~~~~~~~~~~l~~~~le~l~~~~~~~~~~~v~lp~~~~~~~~~~~~~~~~~~~~~~~~ 287 (290)
.+.-++..++.+.+|+.++.++++. ++++|||+++|...+|..|+++++.+.+.+.
T Consensus 240 ~~~g~~aasl~~a~qyIgaf~~lak~--sntv~lP~~pg~v~~mvaQa~~~~~~~s~~~ 296 (301)
T KOG2620|consen 240 QEGGVEAASLFDAEQYIGAFGKLAKK--SNTVFLPHGPGDVRDMVAQALNGYKQLSNAT 296 (301)
T ss_pred HhcchhhHHHHHHHHHHHhhhhhccc--CceEEecCCCCcHHHHHHHHHHHHHhhhccC
Confidence 2355667888999999999999985 6889999999999999999999999988765
No 3
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=1.3e-47 Score=344.26 Aligned_cols=258 Identities=17% Similarity=0.254 Sum_probs=234.2
Q ss_pred cccceeeeecCCcEEEEEEcCcccc-------eeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEE
Q 022890 4 SFCMLCGCIDQASVGIVERWGRFEK-------LAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCS 75 (290)
Q Consensus 4 ~~~~~~~~V~~g~~~Vv~~~Gk~~~-------~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~ 75 (290)
++||| +|++|++|||++||++.+ +++|||||++||+ +++. .+|+|.+.++.+. .++|+|+..|.++++
T Consensus 17 ~~s~~--iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfi-d~V~-~vdvR~q~~d~~~~~vlT~D~~~V~VD~~ 92 (334)
T PRK11029 17 YMSVF--VVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFI-ETVK-MLDARIQTMDNQADRFVTKEKKDLIVDSY 92 (334)
T ss_pred HheEE--EECCCeEEEEEECCceeccccccccccCCceEEEcCCc-eEEE-EEeeEEEEeeCCCceEEcCCCCEEEEEEE
Confidence 56888 999999999999999986 4899999999999 8986 8999999999986 899999999999999
Q ss_pred EEEEEecCchhhhhhhc--CC---hHHHHHHHHHHHHHHhccCCCHHHHHhh-HHHHHHHHHHHHHHH------------
Q 022890 76 IQYRIVRANADDAFYEL--QN---PKEQIQAYVFDVVRALVPRMTLDELFEQ-KGEVAKAVLEELEKV------------ 137 (290)
Q Consensus 76 v~yrI~~~~~~~~~~~~--~~---~~~~l~~~~~~~lr~~i~~~~~~~i~~~-R~~i~~~v~~~l~~~------------ 137 (290)
++|||.| |.++++.+ .| +...|++.+++++|+++|++++++++++ |++|..++++.+++.
T Consensus 93 V~yrI~D--p~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~ 170 (334)
T PRK11029 93 IKWRISD--FSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPA 170 (334)
T ss_pred EEEEECC--HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccc
Confidence 9999985 77777654 23 3578899999999999999999999985 999999999999964
Q ss_pred ---------------------------hhccCeEEEEEEeecCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022890 138 ---------------------------MGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKR 190 (290)
Q Consensus 138 ---------------------------l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~ 190 (290)
+.+|||+|.+|.|++++||+++.++|++++.|+|++++.+.+||+++.+...+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~ 250 (334)
T PRK11029 171 ADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLR 250 (334)
T ss_pred cccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHhhcCCCCcEEEecCCCCCcc
Q 022890 191 AEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGNSSNNTTVFLPHGPGHVR 270 (290)
Q Consensus 191 Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~~~~~~v~lp~~~~~~~ 270 (290)
++++.++.++.|+|++++..++|+|++++++.+++++. .+|+ ++.+++||++++++++++ +++++||.++
T Consensus 251 a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~--~~p~---~~~~~~~lea~~~~~~~~-~~~~vl~~~~---- 320 (334)
T PRK11029 251 ATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFS--QDPD---FYAFIRSLRAYENSFSGN-QDVMVLSPDS---- 320 (334)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCHH---HHHHHHHHHHHHHHhcCC-CcEEEECCCh----
Confidence 99999999999999999999999999999999999986 4676 667789999999999864 4789999885
Q ss_pred cHHHHHH
Q 022890 271 DISDQIR 277 (290)
Q Consensus 271 ~~~~~~~ 277 (290)
++|..|.
T Consensus 321 ~~~~~l~ 327 (334)
T PRK11029 321 DFFRYMK 327 (334)
T ss_pred HHHHHhh
Confidence 7777774
No 4
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=2e-46 Score=330.32 Aligned_cols=248 Identities=17% Similarity=0.293 Sum_probs=226.9
Q ss_pred ceeeeecCCcEEEEEEcCcccceeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCch
Q 022890 7 MLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANA 85 (290)
Q Consensus 7 ~~~~~V~~g~~~Vv~~~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~ 85 (290)
+| +|++|++||+++||++.++++||+||++||+ +++. .+|++.+....+. .++|+|+..|.++++++|||.| |
T Consensus 1 ~~--iV~~ge~~Vv~~fGk~~~~l~pGl~~~~P~i-~~v~-~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d--~ 74 (261)
T TIGR01933 1 IY--TIGEAERGVVLRFGKYHRTVDPGLNWKPPFI-EEVY-PVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITD--P 74 (261)
T ss_pred CE--EeCCCeEEEEEEcCccccccCCcceEECCCc-eEEE-EeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECC--H
Confidence 57 9999999999999999999999999999999 8885 8998764422222 6899999999999999999985 7
Q ss_pred hhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHh-hHHHHHHHHHHHHHHHhhcc--CeEEEEEEeecCCCChHHHHH
Q 022890 86 DDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFE-QKGEVAKAVLEELEKVMGAY--GYSIEHILMVDIIPDPAVRKA 162 (290)
Q Consensus 86 ~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~-~R~~i~~~v~~~l~~~l~~~--Gi~i~~v~I~~i~~p~~v~~a 162 (290)
.++++++.+++..|.+.+++++|+++++++++++++ +|++|.+.+.+.+++.++.| ||+|.+|.|++|+||+++.++
T Consensus 75 ~~~~~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a 154 (261)
T TIGR01933 75 YKYLFSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEA 154 (261)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHH
Confidence 889999999999999999999999999999999999 69999999999999999976 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHH
Q 022890 163 MNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMIT 242 (290)
Q Consensus 163 i~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~ 242 (290)
|++++.|++++++.+.+|+++++..+.+|+++|++.+++|+|++++..+.|+|+++++..+++++. .+|+++ .++
T Consensus 155 ~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~--~~p~~~---~~~ 229 (261)
T TIGR01933 155 FDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYK--KAPDVT---RER 229 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--hChHHH---HHH
Confidence 999999999999999999999999999999999999999999999999999999999999999875 468755 457
Q ss_pred HHHHHHHHhhcCCCCcEEEecCCC
Q 022890 243 QYFDTIKDLGNSSNNTTVFLPHGP 266 (290)
Q Consensus 243 ~~le~l~~~~~~~~~~~v~lp~~~ 266 (290)
+|+|++++++++ ++++++++.++
T Consensus 230 ~~le~~~~~~~~-~~~~~~~~~~~ 252 (261)
T TIGR01933 230 LYLETMEKVLSN-TRKVLLDDKKG 252 (261)
T ss_pred HHHHHHHHHHcc-CCeEEEECCCC
Confidence 899999999964 46788887765
No 5
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=1.7e-46 Score=345.56 Aligned_cols=248 Identities=18% Similarity=0.276 Sum_probs=226.3
Q ss_pred cccceeeeecCCcEEEEEEcCcccceeCCcceeeccccceeEEEeeeeeEEEeeeC-CceeecCCcEEEEEEEEEEEEec
Q 022890 4 SFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVR-IETKTKDNVFVQLLCSIQYRIVR 82 (290)
Q Consensus 4 ~~~~~~~~V~~g~~~Vv~~~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~-~~v~T~D~~~v~v~~~v~yrI~~ 82 (290)
++||| +|+++|+|||++||++.++++||+||++||+ +++. .++++.+..... ..++|+|++.|.|+++|+|||.|
T Consensus 94 ~sg~y--iV~e~E~gVV~rFGk~~~~l~PGLhfk~PfI-d~V~-~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~D 169 (419)
T PRK10930 94 ASGFY--TIKEAERGVVTRFGKFSHLVEPGLNWKPTFI-DEVK-PVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTD 169 (419)
T ss_pred HheEE--EECCCeEEEEEECCcCcceeCCceEEecCce-EEEE-EEEeEEEEEccCcceeECCCCCEEEEEEEEEEEECC
Confidence 57899 9999999999999999999999999999999 8986 788877654433 38999999999999999999984
Q ss_pred CchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhh-HHHHHHHHHHHHHHHhhcc--CeEEEEEEeecCCCChHH
Q 022890 83 ANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQ-KGEVAKAVLEELEKVMGAY--GYSIEHILMVDIIPDPAV 159 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~-R~~i~~~v~~~l~~~l~~~--Gi~i~~v~I~~i~~p~~v 159 (290)
|.+++|++.+++..|++.++++||+++++++++++++. |++|..++++.|++.++.| ||+|.+|.|++++||+++
T Consensus 170 --p~~~lf~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV 247 (419)
T PRK10930 170 --PEKYLFSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEV 247 (419)
T ss_pred --HHHHHHhccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHH
Confidence 88999999999999999999999999999999999997 9999999999999999997 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHH
Q 022890 160 RKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLI 239 (290)
Q Consensus 160 ~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~ 239 (290)
.++|++++.|++++++.+.+||++++..+.+|+++|++.+.+|+|++++..+.|+|+++++..+..+|. ++|++++.
T Consensus 248 ~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~--kaP~vtr~- 324 (419)
T PRK10930 248 KAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYK--AAPEITRE- 324 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh--hCHHHHHH-
Confidence 999999999999999999999999999999999999999999999999999999999998777777654 68988765
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEecC
Q 022890 240 MITQYFDTIKDLGNSSNNTTVFLPH 264 (290)
Q Consensus 240 l~~~~le~l~~~~~~~~~~~v~lp~ 264 (290)
..|||+|++++.+ .+.|++..
T Consensus 325 --RlYletme~vl~~--~~kvivd~ 345 (419)
T PRK10930 325 --RLYIETMEKVLGH--TRKVLVND 345 (419)
T ss_pred --HHHHHHHHHHHcc--CCEEEEeC
Confidence 4699999999984 23345544
No 6
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=3.7e-46 Score=335.80 Aligned_cols=257 Identities=17% Similarity=0.222 Sum_probs=230.8
Q ss_pred ccccceeeeecCCcEEEEEEcCccccee-------CCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEE
Q 022890 3 NSFCMLCGCIDQASVGIVERWGRFEKLA-------EPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLC 74 (290)
Q Consensus 3 ~~~~~~~~~V~~g~~~Vv~~~Gk~~~~l-------~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~ 74 (290)
.++||| +|++|++||+++||++.++. +||+||++||+ +++. .+|++.++++.+. .++|+|+++|.+++
T Consensus 16 l~~~~~--iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~i-~~v~-~vd~r~q~~~~~~~~vlTkD~~~V~Vd~ 91 (317)
T TIGR01932 16 LFQPFF--IIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFI-EHVK-IFDAKIQTMDGRPDRIPTKEKKDIIIDT 91 (317)
T ss_pred HHheEE--EECCCeEEEEEecCceeccccccccccCCCeEEEeccc-cEEE-EeeeeEEEecCCcceeECCCCCEEEEEE
Confidence 357888 99999999999999997654 79999999999 8986 8999999999876 99999999999999
Q ss_pred EEEEEEecCchhhhhhhcC--C---hHHHHHHHHHHHHHHhccCCCHHHHHhh-HHHH----------------------
Q 022890 75 SIQYRIVRANADDAFYELQ--N---PKEQIQAYVFDVVRALVPRMTLDELFEQ-KGEV---------------------- 126 (290)
Q Consensus 75 ~v~yrI~~~~~~~~~~~~~--~---~~~~l~~~~~~~lr~~i~~~~~~~i~~~-R~~i---------------------- 126 (290)
+++|||.+ +.++++.++ + ++..|.+.+++++|+++|++++++++++ |++|
T Consensus 92 ~V~yrV~d--~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~ 169 (317)
T TIGR01932 92 YIRWRIED--FKKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTI 169 (317)
T ss_pred EEEEEECC--HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhcccccccccccccc
Confidence 99999984 778888765 3 4678999999999999999999999987 6665
Q ss_pred -------HHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 022890 127 -------AKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKY 199 (290)
Q Consensus 127 -------~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~ 199 (290)
...+.+.+...+.+|||+|++|.|++++||+++.++|.+++.|+|++++...++++++.+....+++++++.+
T Consensus 170 ~~~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~ 249 (317)
T TIGR01932 170 TKGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRK 249 (317)
T ss_pred chhhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHhhcCCCCcEEEecCCCCCcccHHHH
Q 022890 200 LGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQ 275 (290)
Q Consensus 200 ~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~~~~~~v~lp~~~~~~~~~~~~ 275 (290)
+.|+|++++..++|+|++++++.+++++. .+|+..+ +++|||++++++++ ++++++||.++ ++|..
T Consensus 250 ~~aeA~a~a~~~~Aegea~a~~~~~~a~~--~~p~~~~---~~~~le~~~~~~~~-~~~~~vl~~~~----~~~~~ 315 (317)
T TIGR01932 250 ILSEAYRTARIIKGEGDAEAAKIYSDAYG--KDPEFYS---FWRSLEAYEKSFKD-NQDEKVLSTDS----EFFQY 315 (317)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHc--cCHHHHH---HHHHHHHHHHHhCC-CCCEEEECCCc----HHHHh
Confidence 99999999999999999999999999986 4787544 57999999999986 46789999885 66654
No 7
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=1.5e-45 Score=321.45 Aligned_cols=234 Identities=19% Similarity=0.270 Sum_probs=217.7
Q ss_pred ceeeeecCCcEEEEEEcCcccc-eeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCc
Q 022890 7 MLCGCIDQASVGIVERWGRFEK-LAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRAN 84 (290)
Q Consensus 7 ~~~~~V~~g~~~Vv~~~Gk~~~-~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~ 84 (290)
|| +|++|++||+++||++.+ +++||+||++||+ +++. .+|++.+.++.+. .++|+|++++++++++.|||.|
T Consensus 1 ~~--iV~~ge~~Vv~~~Gk~~~~~~~pG~~~~~P~i-~~v~-~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d-- 74 (242)
T cd03405 1 LF--IVDEGEQAVVLRFGEVVRVVTEPGLHFKLPFI-QQVK-KFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITD-- 74 (242)
T ss_pred CE--EeCCCeEEEEEEcCccccccCCCCeeEEcCCc-ceEE-EEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcC--
Confidence 57 999999999999999987 6899999999999 8875 8999999998766 8999999999999999999985
Q ss_pred hhhhhhhcCChH----HHHHHHHHHHHHHhccCCCHHHHHhh-HHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHH
Q 022890 85 ADDAFYELQNPK----EQIQAYVFDVVRALVPRMTLDELFEQ-KGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAV 159 (290)
Q Consensus 85 ~~~~~~~~~~~~----~~l~~~~~~~lr~~i~~~~~~~i~~~-R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v 159 (290)
|.++++.+.++. ..|.+.+++++|++++++++++++++ |++|.+.+.+.|++.+++|||+|.+|.|++|+||+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i 154 (242)
T cd03405 75 PLRFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEV 154 (242)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHH
Confidence 678888877653 78999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHH
Q 022890 160 RKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLI 239 (290)
Q Consensus 160 ~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~ 239 (290)
.++|++++.|+|++.+++.+|++++.+.+..|++++++.++.|+|+|++..++|+|++++++.+++++. .+|+++
T Consensus 155 ~~ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~--~~p~~~--- 229 (242)
T cd03405 155 SESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYG--KDPEFY--- 229 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--CCHHHH---
Confidence 999999999999999999999999999999999999999999999999999999999999999999986 478755
Q ss_pred HHHHHHHHHHHh
Q 022890 240 MITQYFDTIKDL 251 (290)
Q Consensus 240 l~~~~le~l~~~ 251 (290)
.++++|++|+..
T Consensus 230 ~~~~~l~~~~~~ 241 (242)
T cd03405 230 AFYRSLEAYRNS 241 (242)
T ss_pred HHHHHHHHHHhh
Confidence 457899999865
No 8
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=4.6e-44 Score=316.14 Aligned_cols=239 Identities=23% Similarity=0.328 Sum_probs=215.9
Q ss_pred cccceeeeecCCcEEEEEEcCcccceeCCcceeeccccceeEEEeeeeeEE----------Eee-e-C-CceeecCCcEE
Q 022890 4 SFCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRIN----------SLD-V-R-IETKTKDNVFV 70 (290)
Q Consensus 4 ~~~~~~~~V~~g~~~Vv~~~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~----------~~~-~-~-~~v~T~D~~~v 70 (290)
++||+ +|++|++|||++||+++++++||+||++||+ +++...++++.+ ... . + ..++|+||..|
T Consensus 12 ~~s~~--~V~~ge~gVV~~fGk~~~~~~pGlh~~~P~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v 88 (266)
T cd03404 12 LSGFY--IVQPGERGVVLRFGKYSRTVEPGLHWKLPYP-IEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIV 88 (266)
T ss_pred HcEEE--EECCCceEEeEEcCccccccCCceeEecCCC-cEEEEEecceeEEeeccccccccccCCCcccceEeCCCCEE
Confidence 56888 9999999999999999999999999999999 776545544321 111 1 1 27899999999
Q ss_pred EEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhh-HHHHHHHHHHHHHHHhhcc--CeEEEE
Q 022890 71 QLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQ-KGEVAKAVLEELEKVMGAY--GYSIEH 147 (290)
Q Consensus 71 ~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~-R~~i~~~v~~~l~~~l~~~--Gi~i~~ 147 (290)
.+++++.|||.| |.++++.+.+++..|.+.+++++|++++++++++++++ |++|.+.+++.+++.++.| ||+|.+
T Consensus 89 ~vd~~v~yrI~d--~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~ 166 (266)
T cd03404 89 DVEFAVQYRISD--PYDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVG 166 (266)
T ss_pred EEEEEEEEEECC--HHHHHhhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEE
Confidence 999999999995 67888999999999999999999999999999999998 9999999999999999977 999999
Q ss_pred EEeecCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhc
Q 022890 148 ILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKV 227 (290)
Q Consensus 148 v~I~~i~~p~~v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~ 227 (290)
|.|++++||+++.++|++++.|++++++.+.+|+++++..+..|+++|++.+++|+|++++..+.|+|+++++..+++++
T Consensus 167 v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~ 246 (266)
T cd03404 167 VNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEY 246 (266)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhh
Q 022890 228 EGASAKEVMDLIMITQYFDTIKDLG 252 (290)
Q Consensus 228 ~~~~~~~~~~~~l~~~~le~l~~~~ 252 (290)
. ++|+++ +.+.|++++++++
T Consensus 247 ~--~~~~~~---~~~~~~~~~~~~~ 266 (266)
T cd03404 247 K--KAPDVT---RERLYLETMEEVL 266 (266)
T ss_pred h--hChHHH---HHHHHHHHHHHhC
Confidence 6 467754 4567999999864
No 9
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-40 Score=296.36 Aligned_cols=256 Identities=26% Similarity=0.417 Sum_probs=232.5
Q ss_pred cccceeeeecCCcEEEEEEcCcccceeC-Ccceeeccc---cceeEEEeeeeeEEEeee-CC-ceeecCCcEEEEEEEEE
Q 022890 4 SFCMLCGCIDQASVGIVERWGRFEKLAE-PGLHFFNPC---AGQWLAGILSTRINSLDV-RI-ETKTKDNVFVQLLCSIQ 77 (290)
Q Consensus 4 ~~~~~~~~V~~g~~~Vv~~~Gk~~~~l~-pG~~~~~P~---~~~~v~~~~~~r~~~~~~-~~-~v~T~D~~~v~v~~~v~ 77 (290)
+++++ +|++++.+++++||++.++++ ||+||++|| + ......++.+.++++. +. .+.|+|+..|.+|++++
T Consensus 18 ~~~~~--~v~~~~~~vv~r~G~~~~~~~~pGl~f~iP~~~~~-~~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~ 94 (291)
T COG0330 18 FSSIF--VVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAI-EEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQ 94 (291)
T ss_pred HceeE--EEcCCceEEEEEecceeeecCCCceEEEcCCccce-eeeeeeeeeEEEEeccCCcceEEecCCCEEEEEEEEE
Confidence 56788 999999999999999999998 999999999 5 4554578899999999 55 99999999999999999
Q ss_pred EEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHH-HHHHHHHHHHHHHhhccCeEEEEEEeecCCCC
Q 022890 78 YRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKG-EVAKAVLEELEKVMGAYGYSIEHILMVDIIPD 156 (290)
Q Consensus 78 yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~-~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p 156 (290)
|||.| +.++++.+.+++..|.+.+++.+|++++++++++++++|. .+...+.+.|++.+++|||.|.+|.|++++||
T Consensus 95 ~rv~d--~~~~~~~v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p 172 (291)
T COG0330 95 YRVTD--PQKAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPP 172 (291)
T ss_pred EEEcC--HHHHHHhcCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCC
Confidence 99996 7799999999999999999999999999999999999977 99999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHH
Q 022890 157 PAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVM 236 (290)
Q Consensus 157 ~~v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~ 236 (290)
+++..+|.+++.|++++++.+.+|+++++..+.+|+|++++.++.++|++++ +..++|++++.+.+++++.. .+..
T Consensus 173 ~ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~~~~~~~~~~~~~~---~~~~ 248 (291)
T COG0330 173 EEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEADAAKIIAAALRE---APAA 248 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhhccHHHHHHHhhccc---ccch
Confidence 9999999999999999999999999999999999999999999999999988 66677777777888887653 2234
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEecCCCCC
Q 022890 237 DLIMITQYFDTIKDLGNSSNNTTVFLPHGPGH 268 (290)
Q Consensus 237 ~~~l~~~~le~l~~~~~~~~~~~v~lp~~~~~ 268 (290)
.+++.++|++.+.+...+++++++++|.+.++
T Consensus 249 ~~~~~~r~~~~~~~~~~~~~~~~v~~p~~~~~ 280 (291)
T COG0330 249 PQALAQRYLEELLEIALAGNSKVVVVPNSAGG 280 (291)
T ss_pred hHHHHHHHHHHHHHHhhCCCCeEEEecCCccc
Confidence 57788999999999999888899999988644
No 10
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=4.9e-40 Score=281.72 Aligned_cols=213 Identities=28% Similarity=0.443 Sum_probs=182.9
Q ss_pred ecCCcEEEEEEcCcccceeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhhh
Q 022890 12 IDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAFY 90 (290)
Q Consensus 12 V~~g~~~Vv~~~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~ 90 (290)
|++|++||+++||++.++++||+||++||+ +++.+.+|++.++++++. .++|+|++++.+++++.|||.+ |.++++
T Consensus 1 V~~ge~~Vv~~~G~~~~~~~pG~~f~~P~~-~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d--~~~~~~ 77 (215)
T cd03403 1 VPQYERGVVERLGKYHRTLGPGLHFIIPFI-DRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVD--PVKAVY 77 (215)
T ss_pred CCcceEEEEEEcCcCccccCCcEEEEeccc-eEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEec--HHHHHh
Confidence 689999999999999999999999999999 888349999999999977 7999999999999999999984 778888
Q ss_pred hcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHHHHHH
Q 022890 91 ELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQ 170 (290)
Q Consensus 91 ~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~~~Ae 170 (290)
.+.+++..|.+.+++++|++++++++++++++|+.|.+.+++.|++.+.+|||+|++|.|++|+||+++.++|++++.|+
T Consensus 78 ~~~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~ 157 (215)
T cd03403 78 GVEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAE 157 (215)
T ss_pred cCCCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHH
Q 022890 171 RLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKD 250 (290)
Q Consensus 171 ~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~ 250 (290)
+++++.+.+|++++++.+..|+++++.. .++ ..+.++++|+++.
T Consensus 158 ~~~~a~i~~A~ge~~a~~~~aea~~~~~--------------------------------~~~----~~~~~~~~e~~~~ 201 (215)
T cd03403 158 REKRAKIIEAEGERQAAILLAEAAKQAA--------------------------------INP----AALQLRELETLEE 201 (215)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHc--------------------------------cCH----HHHHHHHHHHHHH
Confidence 8777655555555444333333333221 123 3456799999999
Q ss_pred hhcCCCCcEEEec
Q 022890 251 LGNSSNNTTVFLP 263 (290)
Q Consensus 251 ~~~~~~~~~v~lp 263 (290)
++++.+.++++.|
T Consensus 202 ~~~~~~~~~~~~~ 214 (215)
T cd03403 202 IAKEAASTVVFPA 214 (215)
T ss_pred HHhccCCeEEeeC
Confidence 9999876655544
No 11
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=2.3e-37 Score=261.55 Aligned_cols=191 Identities=21% Similarity=0.292 Sum_probs=165.6
Q ss_pred cceeeeecCCcEEEEEEcCcccc--eeCCcceeeccccceeEEEeeeeeEEEeeeCCceeecCCcEEEEEEEEEEEEecC
Q 022890 6 CMLCGCIDQASVGIVERWGRFEK--LAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDNVFVQLLCSIQYRIVRA 83 (290)
Q Consensus 6 ~~~~~~V~~g~~~Vv~~~Gk~~~--~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~~~ 83 (290)
||| +|++|++||+++||+... +++||+||++||+ +++. .+|++.+.+++...+.|+|++.|++++.+.|++.++
T Consensus 1 ~~~--~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~~-~~v~-~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~ 76 (196)
T cd03401 1 SLY--NVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWF-QKPI-IFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDAS 76 (196)
T ss_pred CEE--EECCCcEEEEEEecCccccCccCCceEEEcccc-ceeE-EEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHH
Confidence 578 999999999999998754 8999999999999 8886 999999999888888999999999999999999865
Q ss_pred chhhhhhhcC-C-hHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHH
Q 022890 84 NADDAFYELQ-N-PKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRK 161 (290)
Q Consensus 84 ~~~~~~~~~~-~-~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ 161 (290)
++..++..++ + .+..|.+.+++++|+++++|+++|++++|++|++.+.+.+++.+.+|||.|++|.|++|+||+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ 156 (196)
T cd03401 77 QLPRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTK 156 (196)
T ss_pred HHHHHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHH
Confidence 5555544443 3 3568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHH
Q 022890 162 AMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQ 208 (290)
Q Consensus 162 ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a 208 (290)
+|++++.|+++.+++. ..+.+|+++|++.+++|+|+|++
T Consensus 157 ai~~k~~a~q~~~~a~--------~~~~~a~~ea~~~~~~A~gea~a 195 (196)
T cd03401 157 AVEAKQVAQQEAERAK--------FVVEKAEQEKQAAVIRAEGEAEA 195 (196)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhhhhc
Confidence 9999999998766522 23456777777777777777654
No 12
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=5.8e-37 Score=269.16 Aligned_cols=193 Identities=18% Similarity=0.231 Sum_probs=171.7
Q ss_pred cccceeeeecCCcEEEEEEcCccc-ceeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEE-EEEEEE
Q 022890 4 SFCMLCGCIDQASVGIVERWGRFE-KLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLC-SIQYRI 80 (290)
Q Consensus 4 ~~~~~~~~V~~g~~~Vv~~~Gk~~-~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~-~v~yrI 80 (290)
++|+| +|++|++||++|||++. .+++|||||++||+ +++. .++++.++++.+. .+.|+||+.|.++. .+.|++
T Consensus 2 ~ssv~--iV~ege~gVV~RfGkv~~~~l~PGLHfkiPfI-d~V~-~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~iv 77 (280)
T cd03406 2 SSALH--KIEEGHVGVYYRGGALLTSTSGPGFHLMLPFI-TTYK-SVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFL 77 (280)
T ss_pred CceEE--EECCCeEEEEEECCcccccccCCceEEecCCc-eEEE-EEEeEEEEeccCCcccccCCCcEEEEEEEEEEEec
Confidence 57899 99999999999999985 57899999999999 8886 7999999988764 88999999999995 566776
Q ss_pred ecCchhhhh--hhcCChHHHHHHHHHHHHHHhccCCCHHHHHhh-HHHHHHHHHHHHHHHhhcc--CeEEEEEEeecCCC
Q 022890 81 VRANADDAF--YELQNPKEQIQAYVFDVVRALVPRMTLDELFEQ-KGEVAKAVLEELEKVMGAY--GYSIEHILMVDIIP 155 (290)
Q Consensus 81 ~~~~~~~~~--~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~-R~~i~~~v~~~l~~~l~~~--Gi~i~~v~I~~i~~ 155 (290)
++..++..+ |...+....|.+.+++++|+++|++++++++++ |+.+...+++.+++.++.| ||+|.+|.|++++|
T Consensus 78 dp~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~ 157 (280)
T cd03406 78 IPDSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKI 157 (280)
T ss_pred CHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCC
Confidence 654444444 344567889999999999999999999999995 9999999999999999988 99999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 022890 156 DPAVRKAMNEINAAQRLQL--------ASVYKGEAEKILQVKRAEAEAEAKYLG 201 (290)
Q Consensus 156 p~~v~~ai~~~~~Ae~~~~--------a~~~~Ae~~~~~~i~~Aeaeae~~~~~ 201 (290)
|+++.++| ++|.|||++. +.+.+||+++...+..|+++|+-.++.
T Consensus 158 P~~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~ 210 (280)
T cd03406 158 PEAIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKIL 210 (280)
T ss_pred CHHHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHH
Confidence 99999998 7999999999 999999999999999999999876553
No 13
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=3.8e-35 Score=250.64 Aligned_cols=171 Identities=15% Similarity=0.283 Sum_probs=159.0
Q ss_pred cceeeeecCCcEEEEEEcCccccee-CCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecC
Q 022890 6 CMLCGCIDQASVGIVERWGRFEKLA-EPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRA 83 (290)
Q Consensus 6 ~~~~~~V~~g~~~Vv~~~Gk~~~~l-~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~ 83 (290)
|+| +|+||+.||+++||++.++. +|||||++||+ +. . ++|+|.++++.+. .+.|+|+.++.+++.+.|||.|
T Consensus 1 g~~--iV~~ge~~Vv~rfGk~~~t~~~pGL~~~~P~~-~~-~-~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~D- 74 (219)
T cd03402 1 GLF--VVEPNQARVLVLFGRYIGTIRRTGLRWVNPFS-SK-K-RVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVD- 74 (219)
T ss_pred CeE--EECCCeeEEEEEcCcCcccccCCceEEEeccc-eE-E-EEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcC-
Confidence 588 99999999999999999875 99999999999 65 3 7999999999888 7999999999999999999994
Q ss_pred chhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHh-------hHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCC
Q 022890 84 NADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFE-------QKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPD 156 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~-------~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p 156 (290)
|.+++|++.|++..|...+++++|+++++++++++++ +|+++.+++++.+++.++.|||+|.++.|+++.||
T Consensus 75 -p~ka~~~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p 153 (219)
T cd03402 75 -TAKAVFNVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYA 153 (219)
T ss_pred -HHHHHHHcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCC
Confidence 8899999999999999999999999999999999986 47999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022890 157 PAVRKAMNEINAAQRLQLASVYKGEAE 183 (290)
Q Consensus 157 ~~v~~ai~~~~~Ae~~~~a~~~~Ae~~ 183 (290)
+++.++|.++++|++++.+....+++.
T Consensus 154 ~ei~~am~~R~~Ae~~~~Ar~~~~~Ga 180 (219)
T cd03402 154 PEIAQAMLQRQQASAIIAARRKIVEGA 180 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999888776666553
No 14
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=4.2e-35 Score=248.42 Aligned_cols=220 Identities=21% Similarity=0.349 Sum_probs=183.6
Q ss_pred ccee-eeecCCcEEEEEEcCcccc--eeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEe
Q 022890 6 CMLC-GCIDQASVGIVERWGRFEK--LAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIV 81 (290)
Q Consensus 6 ~~~~-~~V~~g~~~Vv~~~Gk~~~--~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~ 81 (290)
.|+| ++|++.|++|++|+|++.. ..|||+.|++||+ |+.. ++|+|++.+++|+ +++|||.+.++|++.++|||.
T Consensus 51 ~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCI-Dt~~-kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~ 128 (288)
T KOG2621|consen 51 IWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCI-DTFR-KVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRIS 128 (288)
T ss_pred HHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEeccc-ceee-eeeeeEEeecCCHHHHhcccceEEEeceEEEEEec
Confidence 3444 5999999999999999975 7799999999999 8886 9999999999999 999999999999999999999
Q ss_pred cCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHH
Q 022890 82 RANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRK 161 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ 161 (290)
+ |...+.+++|.....+-++++.||+++++.++.|++++|+.|+.++...|.+....|||+|++|+|+||++|.+.++
T Consensus 129 d--pi~sv~~V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqr 206 (288)
T KOG2621|consen 129 D--PIIAVNNVGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQR 206 (288)
T ss_pred C--HHHHHHhccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhh
Confidence 4 88999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 022890 162 AMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMI 241 (290)
Q Consensus 162 ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~ 241 (290)
++.....|.++..+++..||+++.+ - ++++++...+ ..+|.+. +
T Consensus 207 amaaeAeA~reA~Akviaaege~~a----------------------s----~al~~aa~v~------~~sp~al----q 250 (288)
T KOG2621|consen 207 AMAAEAEATREARAKVIAAEGEKKA----------------------S----EALKEAADVI------SESPIAL----Q 250 (288)
T ss_pred hhhchhhhhhhhhhhHHHHHhhhHH----------------------H----HHHHHhhccc------cCCchhh----h
Confidence 8876665555555544444444322 1 2222221111 2366554 4
Q ss_pred HHHHHHHHHhhcCCCCcEEEecCCC
Q 022890 242 TQYFDTIKDLGNSSNNTTVFLPHGP 266 (290)
Q Consensus 242 ~~~le~l~~~~~~~~~~~v~lp~~~ 266 (290)
.|||+++..++.. .+++++.|...
T Consensus 251 LryLqtl~sia~e-~~~tivfP~p~ 274 (288)
T KOG2621|consen 251 LRYLQTLNSIAAE-KNSTIVFPLPI 274 (288)
T ss_pred hhhhhcchhhhcC-CCCCcccCCCH
Confidence 6999999999876 46778888764
No 15
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.97 E-value=1.3e-30 Score=212.72 Aligned_cols=156 Identities=28% Similarity=0.474 Sum_probs=146.4
Q ss_pred ccceeeeecCCcEEEEEEcCcccceeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecC
Q 022890 5 FCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRA 83 (290)
Q Consensus 5 ~~~~~~~V~~g~~~Vv~~~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~ 83 (290)
+||| +|++|++||+++||++.++++||+||++||+ +++. .++++.++++.+. .+.|+|++++.+++++.|||.+
T Consensus 1 ~~~~--~V~~g~~~v~~~~G~~~~~~~pG~~~~~P~~-~~~~-~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d- 75 (160)
T smart00244 1 AAIK--VVGEGEAGVVERLGRVLRVLGPGLHFLIPFI-DRVK-KVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLD- 75 (160)
T ss_pred CcEE--EEcccEEEEEEecCccccccCCCEEEEecce-eEEE-EEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEcc-
Confidence 4788 9999999999999999999999999999999 8886 8999999998877 8999999999999999999985
Q ss_pred chhhhhhhcCChH-HHHHHHHHHHHHHhccCCCHHHHHh-hHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHH
Q 022890 84 NADDAFYELQNPK-EQIQAYVFDVVRALVPRMTLDELFE-QKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRK 161 (290)
Q Consensus 84 ~~~~~~~~~~~~~-~~l~~~~~~~lr~~i~~~~~~~i~~-~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ 161 (290)
+.++++...+++ ..|++.+++++|+++++++++++++ .|+++.+.+.+.+++.+++||++|.+|.|+++++|+++.+
T Consensus 76 -~~~~~~~~~~~~~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ 154 (160)
T smart00244 76 -PLKAVYRVLDADYAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQE 154 (160)
T ss_pred -HHHHhhhcCCHHHHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHH
Confidence 667888888887 5999999999999999999999999 5999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 022890 162 AMNEI 166 (290)
Q Consensus 162 ai~~~ 166 (290)
+|+++
T Consensus 155 ai~~k 159 (160)
T smart00244 155 AMEQQ 159 (160)
T ss_pred HHHhh
Confidence 99865
No 16
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.97 E-value=2e-31 Score=221.34 Aligned_cols=169 Identities=27% Similarity=0.512 Sum_probs=119.3
Q ss_pred eecCCcEEEEEEcCcccceeCCcceeeccccceeEEEeeeeeEEEeeeCC---ceeecCCcEEEEEEEEEEEEecCchhh
Q 022890 11 CIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI---ETKTKDNVFVQLLCSIQYRIVRANADD 87 (290)
Q Consensus 11 ~V~~g~~~Vv~~~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~---~v~T~D~~~v~v~~~v~yrI~~~~~~~ 87 (290)
+|++|++||++++|++..+++||+||++||+ +++. .+|++.++++++. .+.|+|+.++.+++++.|||. ++..
T Consensus 2 ~V~~g~~~V~~~~G~~~~~~~~G~~~~~P~~-~~~~-~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~--~~~~ 77 (179)
T PF01145_consen 2 TVPPGEVGVVVRFGKVKDVLGPGLHFVIPFI-QKVY-VYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIE--DPPK 77 (179)
T ss_dssp ------------------------------E-EE---S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES---CCC
T ss_pred EeCCCEEEEEEECCeEeEEECCCeEEEeCCc-CeEE-EEeCEEEecccchhhhhhhhcccceeeeeEEEEEEec--hHHH
Confidence 8999999999999999999999999999998 8886 9999999999998 999999999999999999995 4677
Q ss_pred hhhhc----CChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHH
Q 022890 88 AFYEL----QNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAM 163 (290)
Q Consensus 88 ~~~~~----~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai 163 (290)
++..+ .+++..|++.+++++|++++++++++++++|.++.+.+.+.|++.+.+|||+|.+|.|.++++|+++.+++
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~i 157 (179)
T PF01145_consen 78 FVQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEAI 157 (179)
T ss_dssp CCCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHHH
T ss_pred HHHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHHH
Confidence 77777 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHH
Q 022890 164 NEINAAQRLQ-LASVYKGEAE 183 (290)
Q Consensus 164 ~~~~~Ae~~~-~a~~~~Ae~~ 183 (290)
.++..|++++ ++++.+|+++
T Consensus 158 ~~~~~a~~~~~~~~~~~a~~e 178 (179)
T PF01145_consen 158 EEKQRAEQEAQQAEIERAEAE 178 (179)
T ss_dssp HHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 9999999888 5555555544
No 17
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2e-26 Score=189.21 Aligned_cols=235 Identities=16% Similarity=0.266 Sum_probs=196.6
Q ss_pred ccccceeeeecCCcEEEEE-EcCccc-ceeCCcceeeccccceeEEEeeeeeEEEeeeCCceeecCCcEEEEEEEEEEEE
Q 022890 3 NSFCMLCGCIDQASVGIVE-RWGRFE-KLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDNVFVQLLCSIQYRI 80 (290)
Q Consensus 3 ~~~~~~~~~V~~g~~~Vv~-~~Gk~~-~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI 80 (290)
.-.++| .|+-||+++++ |+|.++ +++..|+||.+||+ ++-. .+|.|-+...+....-|+|-+.|++...|.-|-
T Consensus 34 v~~sl~--nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwf-e~pI-iYDvRarP~~i~S~tGskDLQmVnI~lRVLsRP 109 (290)
T KOG3090|consen 34 VTQSLY--NVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWF-ERPI-IYDVRARPRLISSPTGSKDLQMVNIGLRVLSRP 109 (290)
T ss_pred ecceeE--eecCCceEEEEeccccchhccccCCceEeeecc-ccce-eeeeccCcccccCCCCCcceeEEEeeeEEecCC
Confidence 345678 99999999987 677775 68899999999999 8876 899999999999999999999999999999888
Q ss_pred ecCchhhhhhhcC-Ch-HHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChH
Q 022890 81 VRANADDAFYELQ-NP-KEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPA 158 (290)
Q Consensus 81 ~~~~~~~~~~~~~-~~-~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~ 158 (290)
.....+..+...+ || +..|-.++...|++++++++..++++.|+.++-.+++.|.++..++.|.+++|.|+++.|.++
T Consensus 110 ~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~e 189 (290)
T KOG3090|consen 110 MADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKE 189 (290)
T ss_pred ChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHH
Confidence 7656666665554 56 577888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHH
Q 022890 159 VRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDL 238 (290)
Q Consensus 159 v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~ 238 (290)
+..+++.++.|.|+.+.+. -.+.+|+.|.+..+++|+|||++-+.+++|.+. +|..
T Consensus 190 fTaAiEaKQvA~QeAqRA~--------F~VekA~qek~~~ivrAqGEaksAqliGeAi~n-------------n~~f--- 245 (290)
T KOG3090|consen 190 FTAAIEAKQVAAQEAQRAK--------FIVEKAEQEKQSAIVRAQGEAKSAQLIGEAIKN-------------NPAF--- 245 (290)
T ss_pred HHHHHHHHHHHHHHHhhhh--------hhhHHHHHhhhhhhhhhccchHHHHHHHHHHhC-------------Cccc---
Confidence 9999999999999877533 345677778888888888888888888877653 5543
Q ss_pred HHHHHHHHHHHHhhc--CCCCcEEEecCCC
Q 022890 239 IMITQYFDTIKDLGN--SSNNTTVFLPHGP 266 (290)
Q Consensus 239 ~l~~~~le~l~~~~~--~~~~~~v~lp~~~ 266 (290)
+..|-+++-+++++ +.+.|.|||+++.
T Consensus 246 -i~Lrki~aAr~IA~tia~S~NkvyL~~~~ 274 (290)
T KOG3090|consen 246 -ITLRKIEAAREIAQTIASSANKVYLSSDD 274 (290)
T ss_pred -eeehhHHHHHHHHHHHhcCCCeEEecccc
Confidence 34577887777754 2235668998875
No 18
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.3e-24 Score=178.35 Aligned_cols=236 Identities=18% Similarity=0.306 Sum_probs=193.6
Q ss_pred ccceeeeecCCcEEEEE-EcCcc-cceeCCcceeeccccceeEEEeeeeeEEEeeeCCceeecCCcEEEEEEEEEEEEec
Q 022890 5 FCMLCGCIDQASVGIVE-RWGRF-EKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDNVFVQLLCSIQYRIVR 82 (290)
Q Consensus 5 ~~~~~~~V~~g~~~Vv~-~~Gk~-~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~~ 82 (290)
+++| .|+-|+++|++ ||-.+ ..+.+.|.||.+||. ++.. .+|.|.....++...-|||-+.|+++..+.||-..
T Consensus 25 s~ly--~vdgg~ravifdrf~gv~~~vvgegthflipw~-qk~~-i~d~rs~p~~v~~itGskdLQ~VniTlril~rp~~ 100 (271)
T KOG3083|consen 25 SALY--NVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWV-QKPI-IFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVV 100 (271)
T ss_pred hhhc--ccCCCceeEEeecccchhhhcccCCceeeeeec-cCcE-EEeccCCCcccccccCchhhhcccceEEEEecccc
Confidence 5678 99999999997 45444 457899999999999 8875 89999999999989999999999999999999876
Q ss_pred CchhhhhhhcC-Ch-HHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHH
Q 022890 83 ANADDAFYELQ-NP-KEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVR 160 (290)
Q Consensus 83 ~~~~~~~~~~~-~~-~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~ 160 (290)
...+..+.+.+ || +..|-.+....|++++++++..++++.|+-++..+.+.|.+....+|+.+++|.|+++++-.++.
T Consensus 101 sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt 180 (271)
T KOG3083|consen 101 SQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFT 180 (271)
T ss_pred cccchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHH
Confidence 66777777664 55 56777788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHH
Q 022890 161 KAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIM 240 (290)
Q Consensus 161 ~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l 240 (290)
++++.++.|+|+.+.+. -.+.+|+.+..+.++.|||++++.+.++.+++.+ +.- ++
T Consensus 181 ~AvE~KQVAQQEAErar--------FvVeKAeQqk~aavIsAEGds~aA~li~~sla~a------------G~g----Li 236 (271)
T KOG3083|consen 181 EAVEAKQVAQQEAERAR--------FVVEKAEQQKKAAVISAEGDSKAAELIANSLATA------------GDG----LI 236 (271)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHhhhhhhheeecccchHHHHHHHHHHhhc------------CCc----ee
Confidence 99999999999877543 2456677777778888888888777777777642 222 22
Q ss_pred HHHHHHHHHHhhc--CCCCcEEEecCCCCC
Q 022890 241 ITQYFDTIKDLGN--SSNNTTVFLPHGPGH 268 (290)
Q Consensus 241 ~~~~le~l~~~~~--~~~~~~v~lp~~~~~ 268 (290)
..+-+|+-++++. +.+.++.|||.+...
T Consensus 237 elrrlEAa~dia~~Ls~s~nv~YLp~g~s~ 266 (271)
T KOG3083|consen 237 ELRRLEAAEDIAYQLSRSRNVTYLPAGQSM 266 (271)
T ss_pred eehhhhhHHHHHHHHhcCCCceeccCCcce
Confidence 3466777776653 334788999976543
No 19
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.88 E-value=9.5e-22 Score=167.41 Aligned_cols=156 Identities=13% Similarity=0.214 Sum_probs=132.6
Q ss_pred ccceeeeecCCcEEEEEEcCcccceeCCcceeec----ccccee---------------EEEeeeeeEEEeeeC---C--
Q 022890 5 FCMLCGCIDQASVGIVERWGRFEKLAEPGLHFFN----PCAGQW---------------LAGILSTRINSLDVR---I-- 60 (290)
Q Consensus 5 ~~~~~~~V~~g~~~Vv~~~Gk~~~~l~pG~~~~~----P~~~~~---------------v~~~~~~r~~~~~~~---~-- 60 (290)
.|.+ +|++|+++|++++|++.++++||.|+++ |++ .. + +.++++.+..... .
T Consensus 14 ~s~~--iV~e~~~av~~~~Gk~~~~~~~g~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~ 89 (207)
T cd03408 14 GSQL--IVREGQAAVFVNEGKVADVFAPGGYYLTTNNLPVL-AFLLSGDKGFSSPFKGEV-YFFNTRVFTDLLWGTPAPV 89 (207)
T ss_pred CCEE--EEcCCcEEEEEECCEEEEEecCCcceeeecCccHH-HHhcChhhhCcCCceeEE-EEEECEEEeccccCCCCCe
Confidence 4778 9999999999999999999999888765 333 22 3 3677777655321 1
Q ss_pred --ceeecCCcEEEEEEEEEEEEecCchhhhhhhcC---------ChHHHHHHHHHHHHHHhccCCCHHHHHhh--HHHHH
Q 022890 61 --ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQ---------NPKEQIQAYVFDVVRALVPRMTLDELFEQ--KGEVA 127 (290)
Q Consensus 61 --~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~---------~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~ 127 (290)
...|+|+++|.+++++.|||.| |.+++.++. +....|++.+++++|++++++++++++.+ |++|+
T Consensus 90 ~~~~~~~~~v~v~v~~~~~~kI~D--p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~ 167 (207)
T cd03408 90 FGRDSEFGGVPLRAFGTYSLKVTD--PVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELS 167 (207)
T ss_pred eeeCCccceEEEEeeEEEEEEEcC--HHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHH
Confidence 4568889999999999999985 778876653 35678999999999999999999999998 99999
Q ss_pred HHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHH
Q 022890 128 KAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEI 166 (290)
Q Consensus 128 ~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~ 166 (290)
+.+++.+++.+++|||+|.+|.|++|++|+++.+++.++
T Consensus 168 ~~v~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 168 KAVREALAPWFASFGLELVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence 999999999999999999999999999999999998754
No 20
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.86 E-value=2.5e-19 Score=156.12 Aligned_cols=150 Identities=17% Similarity=0.208 Sum_probs=124.9
Q ss_pred eecCCcEEEEEEcCcccceeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhh
Q 022890 11 CIDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAF 89 (290)
Q Consensus 11 ~V~~g~~~Vv~~~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~ 89 (290)
+..+++..+++.+|.-...+-+| .|.+|| +++. ++|+...++++.. .+.|+.|+|+.|.+..+..|..+++...+
T Consensus 4 ~~~~~~~l~itg~g~~~~~lv~~-~wvf~w--q~~q-~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~elL 79 (428)
T KOG2668|consen 4 VAGASQYLAITGGGIEDIKLVKK-SWVFPW--QQCT-VFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADELL 79 (428)
T ss_pred cCCccceEEeecccccCceeccc-ceeeee--eeee-EEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHHHH
Confidence 66899999999988776555554 455677 5665 8999999999988 69999999999999999998865644332
Q ss_pred h-------h--cCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCCh--H
Q 022890 90 Y-------E--LQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDP--A 158 (290)
Q Consensus 90 ~-------~--~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~--~ 158 (290)
. . ..+...++...+++++|.++++|+++++|.+|.+|...+++..+.+|..+||.|.+.+|+|+...+ +
T Consensus 80 ~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~~ 159 (428)
T KOG2668|consen 80 LYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGHE 159 (428)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccchH
Confidence 1 1 123457788889999999999999999999999999999999999999999999999999998765 6
Q ss_pred HHHHHH
Q 022890 159 VRKAMN 164 (290)
Q Consensus 159 v~~ai~ 164 (290)
+..++.
T Consensus 160 YlssLG 165 (428)
T KOG2668|consen 160 YLSSLG 165 (428)
T ss_pred HHHHhh
Confidence 887776
No 21
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=99.85 E-value=1.8e-19 Score=149.03 Aligned_cols=188 Identities=16% Similarity=0.200 Sum_probs=148.7
Q ss_pred eecCCcEEEEEEcCccc-ceeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEE-EEEEEecCchhh
Q 022890 11 CIDQASVGIVERWGRFE-KLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCS-IQYRIVRANADD 87 (290)
Q Consensus 11 ~V~~g~~~Vv~~~Gk~~-~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~-v~yrI~~~~~~~ 87 (290)
.|++|++||.+|-|..- .+.+||+|..+||+ ..+. .+.+..|+-++.. .+-|+.|+.+.+|-. +.-++.++..++
T Consensus 25 kieEGHvgvYyRGGALL~~~t~PG~Hl~lPFi-Tt~k-sVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L~~d~Vyd 102 (322)
T KOG2962|consen 25 KIEEGHVGVYYRGGALLTSITGPGFHLMLPFI-TTYK-SVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRPDAVYD 102 (322)
T ss_pred hcccCceEEEEecceeeeccCCCCcEEEeeee-ecee-eeEEEeeccccccCCCCCCCcEEEEEehhhhhhhhchhHHHH
Confidence 89999999999999875 57899999999999 6765 7777788877777 999999999987743 222222222334
Q ss_pred hhhhcC-ChH-HHHHHHHHHHHHHhccCCCHHHHHhh-HHHHHHHHHHHHHHHhhcc--CeEEEEEEeecCCCChHHHHH
Q 022890 88 AFYELQ-NPK-EQIQAYVFDVVRALVPRMTLDELFEQ-KGEVAKAVLEELEKVMGAY--GYSIEHILMVDIIPDPAVRKA 162 (290)
Q Consensus 88 ~~~~~~-~~~-~~l~~~~~~~lr~~i~~~~~~~i~~~-R~~i~~~v~~~l~~~l~~~--Gi~i~~v~I~~i~~p~~v~~a 162 (290)
.+.++. ||+ .+|.+-+.-.+...|+.+++.+++-+ -++|.+.++..|++.+..+ |++|..|.++....|+.+...
T Consensus 103 iv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEaiRrN 182 (322)
T KOG2962|consen 103 IVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEAIRRN 182 (322)
T ss_pred HHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHHHHHh
Confidence 444432 454 67889999999999999999999999 8999999999999999998 999999999999999999988
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 022890 163 MNE-------INAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYL 200 (290)
Q Consensus 163 i~~-------~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~ 200 (290)
++. ...|.+.+.....+||.++..+++.||.-|+-.++
T Consensus 183 ~E~ME~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~AqVa~I 227 (322)
T KOG2962|consen 183 FELMEAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVAKI 227 (322)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 863 33344444556677888888888888776655433
No 22
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.82 E-value=1.6e-19 Score=141.43 Aligned_cols=119 Identities=22% Similarity=0.360 Sum_probs=106.5
Q ss_pred eeeeeEEEeeeCCceeecCCcEEEEEEEEEEEEecCchhhhhhhcC-C-hHHHHHHHHHHHHHHhccCCCHHHHHh-hHH
Q 022890 48 ILSTRINSLDVRIETKTKDNVFVQLLCSIQYRIVRANADDAFYELQ-N-PKEQIQAYVFDVVRALVPRMTLDELFE-QKG 124 (290)
Q Consensus 48 ~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~-~-~~~~l~~~~~~~lr~~i~~~~~~~i~~-~R~ 124 (290)
.+|+|.++.+.+..++|+||+.+.+++++.|||.++++...+..++ + .+..|++.+++++|+++++++++++++ +|+
T Consensus 2 ~~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~ 81 (124)
T cd03400 2 EYSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRK 81 (124)
T ss_pred cccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHH
Confidence 4788889888888999999999999999999998766555554443 2 456899999999999999999999997 599
Q ss_pred HHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHH
Q 022890 125 EVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEI 166 (290)
Q Consensus 125 ~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~ 166 (290)
+|.+.+.+.+++.+.+|||+|.+|.|++++||+++.++|+++
T Consensus 82 ~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 82 EIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999865
No 23
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.76 E-value=1.4e-16 Score=149.01 Aligned_cols=189 Identities=22% Similarity=0.212 Sum_probs=151.8
Q ss_pred cceeeeecCCcEEEEEE--c------CcccceeCCcceeeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEE
Q 022890 6 CMLCGCIDQASVGIVER--W------GRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSI 76 (290)
Q Consensus 6 ~~~~~~V~~g~~~Vv~~--~------Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v 76 (290)
.||| +.++++..|++. + |.-.+++.+|+||++|++ +... ++++++.++++.. .++|+||.++++++..
T Consensus 33 ~~y~-~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~-q~~~-r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a 109 (548)
T COG2268 33 RFYI-IARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIF-QTIE-RMSLTTIKLEVEIDNVYTKDGMPLNVEAVA 109 (548)
T ss_pred eeEE-ecCCCceEEEeccccCCcccccCCccEEecCceEEecce-eeeE-EeeeeeeeeeeeeeeeEecCCCccceeEEE
Confidence 5775 677777777653 2 444578999999999999 8886 9999999999984 9999999999999999
Q ss_pred EEEEecC--chhhhhhhc--C----ChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEE
Q 022890 77 QYRIVRA--NADDAFYEL--Q----NPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHI 148 (290)
Q Consensus 77 ~yrI~~~--~~~~~~~~~--~----~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v 148 (290)
..+|.|+ +...+.-.+ . +....++..+.++||.+++++++.+++.+|..|.+.+.+.+...|.+.|+.|+++
T Consensus 110 ~v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~ 189 (548)
T COG2268 110 YVKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSL 189 (548)
T ss_pred EEEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeee
Confidence 9999872 222333222 2 3457788999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCC-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 022890 149 LMVDIIPD-------PAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEA 197 (290)
Q Consensus 149 ~I~~i~~p-------~~v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~ 197 (290)
.|.+++.+ ..+.++...+..++-.+.+.+.++|.++...+..++++.++
T Consensus 190 ~I~~i~d~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~~~t~i~i~~a~~~a 245 (548)
T COG2268 190 AINDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDA 245 (548)
T ss_pred eecccccccccccChhhhhhhcChHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHH
Confidence 99999988 88999988777777666666666666655555555444333
No 24
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.76 E-value=6.8e-18 Score=132.91 Aligned_cols=114 Identities=21% Similarity=0.308 Sum_probs=101.3
Q ss_pred eeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhhh----hc-----CChHHHHHHHHHHHHHHhccCCCHHH
Q 022890 49 LSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAFY----EL-----QNPKEQIQAYVFDVVRALVPRMTLDE 118 (290)
Q Consensus 49 ~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~----~~-----~~~~~~l~~~~~~~lr~~i~~~~~~~ 118 (290)
+++|.+.++++. .++|+|++++.+++++.|||.++ .+++. ++ .+.+..+.+.+++++|+++|++++++
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~e 79 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGT--EEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEE 79 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEeCCC--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 578899999987 99999999999999999999964 33332 22 23578899999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHH
Q 022890 119 LFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMN 164 (290)
Q Consensus 119 i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~ 164 (290)
++++|++|.+++.+.+...+++|||+|.+|.|++|++|+.+.+++.
T Consensus 80 l~~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~ 125 (128)
T cd03399 80 IYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLG 125 (128)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcC
Confidence 9999999999999999999999999999999999999999887764
No 25
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.66 E-value=3.5e-15 Score=115.18 Aligned_cols=112 Identities=35% Similarity=0.566 Sum_probs=99.0
Q ss_pred EEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhhhhcCChH--HHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHH
Q 022890 53 INSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPK--EQIQAYVFDVVRALVPRMTLDELFEQKGEVAKA 129 (290)
Q Consensus 53 ~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~--~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~ 129 (290)
..+.+.+. .++|+|++++.+++++.|+|.++ ..+++.+.+.. ..|.+.+.+++|++++.++++++.++|++|.+.
T Consensus 6 ~~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~ 83 (121)
T cd02106 6 RQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDP--VKALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAAE 83 (121)
T ss_pred eEEecCCCceEEecCCCEEEEEEEEEEEEeCH--HHHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHH
Confidence 34444444 89999999999999999999973 35666665544 899999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHH
Q 022890 130 VLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEI 166 (290)
Q Consensus 130 v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~ 166 (290)
+++.+...+++||++|.+|.|+++++|+++.++++++
T Consensus 84 v~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 84 VREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 9999999999999999999999999999999998865
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=99.45 E-value=8.4e-12 Score=106.02 Aligned_cols=156 Identities=15% Similarity=0.229 Sum_probs=120.3
Q ss_pred cceeeeecCCcEEEEEEcCcccceeCCcceee-------------------ccccceeEEEeeeeeEEE-eeeC--Ccee
Q 022890 6 CMLCGCIDQASVGIVERWGRFEKLAEPGLHFF-------------------NPCAGQWLAGILSTRINS-LDVR--IETK 63 (290)
Q Consensus 6 ~~~~~~V~~g~~~Vv~~~Gk~~~~l~pG~~~~-------------------~P~~~~~v~~~~~~r~~~-~~~~--~~v~ 63 (290)
+-. +|++||.+|..+-|++..+.+||.|-+ .||- ..| |.++++... ..+. ..+.
T Consensus 15 S~L--iV~egQ~Avfv~~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~-~eV-yFvn~~~~~~~kwGT~~pi~ 90 (211)
T PF13421_consen 15 SQL--IVREGQCAVFVNDGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFK-AEV-YFVNTKEITNIKWGTPNPIP 90 (211)
T ss_pred CEE--EECCCCEEEEEECCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCce-EEE-EEEECeEecCCccCCCCCee
Confidence 445 899999999999999988999999975 2443 444 467777642 3333 2332
Q ss_pred ecC----CcEEEEEEEEEEEEecCchhhhhhhcC---------ChHHHHHHHHHHHHHHhcc--CCCHHHHHhhHHHHHH
Q 022890 64 TKD----NVFVQLLCSIQYRIVRANADDAFYELQ---------NPKEQIQAYVFDVVRALVP--RMTLDELFEQKGEVAK 128 (290)
Q Consensus 64 T~D----~~~v~v~~~v~yrI~~~~~~~~~~~~~---------~~~~~l~~~~~~~lr~~i~--~~~~~~i~~~R~~i~~ 128 (290)
-.| .+++.+.+++.|||.| |..++.++- +..+.+++.+.+.+.+.++ ++++.+|-+.-.+|++
T Consensus 91 ~~D~~~~~v~lra~G~ys~rI~D--p~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~ 168 (211)
T PF13421_consen 91 YRDPEYGPVRLRAFGTYSFRIVD--PVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISE 168 (211)
T ss_pred ecCCCCCcEEEEEEEEEEEEEeC--HHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 222 3567777788888885 777765432 2356777777777777776 5899999999999999
Q ss_pred HHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHHH
Q 022890 129 AVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEIN 167 (290)
Q Consensus 129 ~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~~ 167 (290)
.+++.|++.++.+||+|.++.|.+|++|+++++.++++.
T Consensus 169 ~~~~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~~ 207 (211)
T PF13421_consen 169 ALKEKLNPEFERYGIELVDFGIESISFPEEVQKAIDKRA 207 (211)
T ss_pred HHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999988653
No 27
>PTZ00491 major vault protein; Provisional
Probab=98.96 E-value=1.9e-07 Score=91.74 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=104.4
Q ss_pred eecCCcEEEEEE--cCcccceeCCcceeeccccceeEEEeeeeeE------E-----EeeeCC-------ceeecCCcEE
Q 022890 11 CIDQASVGIVER--WGRFEKLAEPGLHFFNPCAGQWLAGILSTRI------N-----SLDVRI-------ETKTKDNVFV 70 (290)
Q Consensus 11 ~V~~g~~~Vv~~--~Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r~------~-----~~~~~~-------~v~T~D~~~v 70 (290)
.||.+...=++- -++-.-++||-+.++=|- +.+. .+++.- + .+.+.+ .+-|+|...+
T Consensus 466 ~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd--E~ft-vlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL 542 (850)
T PTZ00491 466 KVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD--EEFT-VLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARL 542 (850)
T ss_pred EcCCCcEEEEEEcccCceEEEECCceEEecCC--CceE-EEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceE
Confidence 455554433433 244334679988888885 2222 333321 1 111222 5899999999
Q ss_pred EEEEEEEEEEe--cCch--hhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhH-HHHHHHHHHHHHH--------H
Q 022890 71 QLLCSIQYRIV--RANA--DDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQK-GEVAKAVLEELEK--------V 137 (290)
Q Consensus 71 ~v~~~v~yrI~--~~~~--~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R-~~i~~~v~~~l~~--------~ 137 (290)
.+..++.|+.. +.|+ ....|++.|+-.-+-..+.+.+|..++..+++++..+- .-|.+.|+....+ .
T Consensus 543 ~l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l~ 622 (850)
T PTZ00491 543 ALQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSLR 622 (850)
T ss_pred EEEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccceE
Confidence 99999999987 2234 36779999999988899999999999999999999984 4455666653322 3
Q ss_pred hhccCeEEEEEEeecCCC-ChHHHHHHH
Q 022890 138 MGAYGYSIEHILMVDIIP-DPAVRKAMN 164 (290)
Q Consensus 138 l~~~Gi~i~~v~I~~i~~-p~~v~~ai~ 164 (290)
|...|+.|.+|.|+++.| ++...++++
T Consensus 623 F~~N~lvit~VDvqsvEpvD~~tr~~Lq 650 (850)
T PTZ00491 623 FPANNLVITNVDVQSVEPVDERTRDSLQ 650 (850)
T ss_pred EccCCeEEEEEeeeeeeecCHHHHHHHH
Confidence 456799999999999997 455555555
No 28
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=98.88 E-value=8.3e-08 Score=82.57 Aligned_cols=156 Identities=13% Similarity=0.158 Sum_probs=118.6
Q ss_pred cceeeeecCCcEEEEEEcCccccee-CCccee-------------------eccccceeEEEeeeeeEEE-eeeCC--ce
Q 022890 6 CMLCGCIDQASVGIVERWGRFEKLA-EPGLHF-------------------FNPCAGQWLAGILSTRINS-LDVRI--ET 62 (290)
Q Consensus 6 ~~~~~~V~~g~~~Vv~~~Gk~~~~l-~pG~~~-------------------~~P~~~~~v~~~~~~r~~~-~~~~~--~v 62 (290)
+.. +|.|++-++...-|++..+. ++|.+- ..|+- +.|+ .++++++. +.+.. .+
T Consensus 40 s~l--~Vrp~qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k-~eVy-fvntqe~~girwGT~qpi 115 (345)
T COG4260 40 SIL--HVRPNQMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFK-QEVY-FVNTQEIKGIRWGTPQPI 115 (345)
T ss_pred cEE--EEecCceEEEEcCCEEEeeecCCceeEeeecccchhhhhhcceecCCCccc-ceEE-EEecceecceecCCCCCe
Confidence 455 89999999999999988776 477652 24554 5664 88888876 55543 33
Q ss_pred eecC-----CcEEEEEEEEEEEEecCchhhhhhh---------cCChHHHHHHHHHHHHHHhccCC--CHHHHHhhHHHH
Q 022890 63 KTKD-----NVFVQLLCSIQYRIVRANADDAFYE---------LQNPKEQIQAYVFDVVRALVPRM--TLDELFEQKGEV 126 (290)
Q Consensus 63 ~T~D-----~~~v~v~~~v~yrI~~~~~~~~~~~---------~~~~~~~l~~~~~~~lr~~i~~~--~~~~i~~~R~~i 126 (290)
.-.| .++++...+..|+|.| |..++-. +++.++.+-+.+..+|...+.++ .+..+-++--+|
T Consensus 116 n~~dn~~~g~l~lRa~Gtys~kvtD--pi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~el 193 (345)
T COG4260 116 NYFDNFYNGELFLRAHGTYSIKVTD--PILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMEL 193 (345)
T ss_pred ecccccccceeEEeecceEEEEecC--HHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHH
Confidence 3333 5678888888899986 5554432 34456777788888888888764 455777778999
Q ss_pred HHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHHH
Q 022890 127 AKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEIN 167 (290)
Q Consensus 127 ~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~~ 167 (290)
++.+.+.|.+.+..+|..|++|.|-+|++|++.+..|+.+.
T Consensus 194 sk~m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r~ 234 (345)
T COG4260 194 SKYMAEVLDEQWTQYGMAVDSFQVASISYPDESQALINMRN 234 (345)
T ss_pred HHHHHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhhc
Confidence 99999999999999999999999999999999999998654
No 29
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=97.41 E-value=0.00065 Score=59.06 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Q 022890 168 AAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENI 220 (290)
Q Consensus 168 ~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~ 220 (290)
.|+.++++.+.+|+++++..+..|+|+|++.+++|+|+|++.++.+++...+.
T Consensus 174 ~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~p 226 (242)
T cd03405 174 RAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDP 226 (242)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCH
Confidence 34444556666677777777777777777777777777777777776665443
No 30
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=97.33 E-value=0.0059 Score=52.95 Aligned_cols=108 Identities=17% Similarity=0.183 Sum_probs=78.3
Q ss_pred eeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHH
Q 022890 49 LSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVA 127 (290)
Q Consensus 49 ~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~ 127 (290)
.+.....++.|. ....+||..+.+.+.+..|-+ ..+ +..-...+..+-..-++.+..+-+.-+-.+++.+-+.|+
T Consensus 120 ~SVnPkVI~~P~i~aVAkdGIql~~kArVTVRaN---i~r-LVGGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~IS 195 (316)
T PF12127_consen 120 TSVNPKVIDTPTIAAVAKDGIQLKVKARVTVRAN---IDR-LVGGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSIS 195 (316)
T ss_pred cccCCeeecCcchhhhhcCCeEEEEEEEEEEEec---HHH-hccCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHH
Confidence 444445566665 778999999999988888875 322 333345567777777888887778888899999999998
Q ss_pred HHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHH
Q 022890 128 KAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKA 162 (290)
Q Consensus 128 ~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~a 162 (290)
+.+.+. ..-...-++|.++.|-||+.-+.+-..
T Consensus 196 k~VL~k--gLDagTAFeIlSIDIaDidVG~NIGA~ 228 (316)
T PF12127_consen 196 KTVLEK--GLDAGTAFEILSIDIADIDVGENIGAK 228 (316)
T ss_pred HHHHhh--CCCcCceeEEEEeeeeccccchhhchh
Confidence 887753 222233599999999999988765433
No 31
>PRK13665 hypothetical protein; Provisional
Probab=97.07 E-value=0.0049 Score=53.22 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=72.5
Q ss_pred eeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHH
Q 022890 49 LSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVA 127 (290)
Q Consensus 49 ~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~ 127 (290)
.+.....++.|. ....+||+.+.+.+.+..|-+ ..+. ..-..-+..+-..-++.+..+-+.-+-.+++.+-+.|+
T Consensus 125 ~SVnPkVI~~P~i~aVAkdGIql~~kARVTVRaN---i~rL-VGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~IS 200 (316)
T PRK13665 125 MSVNPKVIETPFIAAVAKDGIEVKAKARVTVRAN---IDRL-VGGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSIS 200 (316)
T ss_pred cccCCeeecCCcchhhcccCeEEEEEEEEEeehh---HHHH-hCCCcceeeEeeecCceeecccCcchHHHHhcCHHHHH
Confidence 445555666666 778999999998888888854 2222 22222344444455566666667778889999999888
Q ss_pred HHHHHHHHHHhhc-cCeEEEEEEeecCCCChHHHHHH
Q 022890 128 KAVLEELEKVMGA-YGYSIEHILMVDIIPDPAVRKAM 163 (290)
Q Consensus 128 ~~v~~~l~~~l~~-~Gi~i~~v~I~~i~~p~~v~~ai 163 (290)
..+.+ +-|+. .-++|.++.|-||+.-+.+-..+
T Consensus 201 k~VL~---kGLDagTAFeIlSIDIADvdVG~NIGA~L 234 (316)
T PRK13665 201 KTVLS---KGLDAGTAFEILSIDIADVDVGKNIGAKL 234 (316)
T ss_pred HHHHh---ccCCcCceeEEEEEeeeccccchhhchhh
Confidence 66653 33443 35999999999999888754333
No 32
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=96.94 E-value=0.0078 Score=54.59 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=20.0
Q ss_pred HHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Q 022890 186 LQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILN 222 (290)
Q Consensus 186 ~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~ 222 (290)
+...+++|++++.++.|+|++++.++.++|++++...
T Consensus 225 a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a~a~~~ 261 (317)
T TIGR01932 225 ARMHRSQGEEKAEEILGKAEYEVRKILSEAYRTARII 261 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555666666665555555544333
No 33
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=96.80 E-value=0.007 Score=55.13 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=46.9
Q ss_pred EEeecCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhh
Q 022890 148 ILMVDIIPDP-AVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHK 226 (290)
Q Consensus 148 v~I~~i~~p~-~v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a 226 (290)
|.|.++.+-+ .+=..+.+.+. ...+||.++.+...+|+|++++.+++++|+.++.++.|+|++++....++.
T Consensus 203 I~V~~V~i~~i~~P~~v~~ai~-------~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aeg 275 (334)
T PRK11029 203 IEVVDVRIKQINLPTEVSDAIY-------NRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEG 275 (334)
T ss_pred cEEEEEEEEecCCCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 5566665533 22233333333 223455566666778999999999999998888888888888766555443
No 34
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=96.76 E-value=0.016 Score=50.96 Aligned_cols=96 Identities=9% Similarity=0.015 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHH---hhccCeEEEEEEeecCCCChHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022890 126 VAKAVLEELEKV---MGAYGYSIEHILMVDIIPDPAVRKAMNEI-------NAAQRLQLASVYKGEAEKILQVKRAEAEA 195 (290)
Q Consensus 126 i~~~v~~~l~~~---l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~-------~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaea 195 (290)
+.+.+.+.+... +.=..+.|.++.+-+ .+-+.+.+.+... ..|+.++...+.+|++++++.+..|+|.+
T Consensus 120 i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~-~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~ 198 (261)
T TIGR01933 120 TKERLNEIIDNYDLGITVTDVNFQSARPPE-EVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYK 198 (261)
T ss_pred HHHHHHHHHhhhcCCcEEEEEEEEecCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444432 344567888888654 2334444433322 23344455566678888888899999999
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHH
Q 022890 196 EAKYLGGVGVARQRQAITDGLRENILN 222 (290)
Q Consensus 196 e~~~~~A~a~A~a~~~~aea~a~~~~~ 222 (290)
++.+++|+|+|++..+.+++...+-..
T Consensus 199 ~~~~~~a~g~a~~~~~~~~ay~~~p~~ 225 (261)
T TIGR01933 199 ERRINRAKGDVARFTKLLAEYKKAPDV 225 (261)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhChHH
Confidence 999999999999999888877655433
No 35
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=96.45 E-value=0.019 Score=50.64 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhccCeEEE--EEEeecCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhh
Q 022890 129 AVLEELEKVMGAYGYSIE--HILMVDIIPDP-AVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGV 205 (290)
Q Consensus 129 ~v~~~l~~~l~~~Gi~i~--~v~I~~i~~p~-~v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~ 205 (290)
.+.+.+.+.++.. +.-. .+.|.++.+-+ ..-+.+.+.+.+ ...|+.++.+.+.+|++++++.+.+|+|+
T Consensus 142 ~i~~~i~~~l~~~-~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~-------~~~A~q~~~~~~~eae~~a~~~~~~A~~e 213 (266)
T cd03404 142 EIAQDVRELLQAI-LDAYKAGIEIVGVNLQDADPPEEVQDAFDD-------VNKARQDRERLINEAEAYANEVVPKARGE 213 (266)
T ss_pred HHHHHHHHHHHHH-hhccCCCeEEEEEEEEeCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Confidence 3455555555432 2222 68888888753 334455544433 23444455666778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 022890 206 ARQRQAITDGLRENILNFSHK 226 (290)
Q Consensus 206 A~a~~~~aea~a~~~~~~~~a 226 (290)
|++..+.|+|.+++....+++
T Consensus 214 a~~~~~~A~a~~~~~~~~ae~ 234 (266)
T cd03404 214 AARIIQEAEAYKEEVIAEAQG 234 (266)
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999887777665
No 36
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=96.41 E-value=0.023 Score=43.09 Aligned_cols=95 Identities=15% Similarity=0.225 Sum_probs=69.3
Q ss_pred ceeecCCcEEEEEEEEEEEEec--Cchh--hhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHH-HHHHHHHH--
Q 022890 61 ETKTKDNVFVQLLCSIQYRIVR--ANAD--DAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGE-VAKAVLEE-- 133 (290)
Q Consensus 61 ~v~T~D~~~v~v~~~v~yrI~~--~~~~--~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~-i~~~v~~~-- 133 (290)
.+-|+|...+.+..++.|...- .++. ...|++.|+-.-+-..+.+.+|..++..+.+++..+-.. |.+.|...
T Consensus 10 ~VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~ 89 (118)
T PF11978_consen 10 TVETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDE 89 (118)
T ss_dssp EEE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS--
T ss_pred EEeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCC
Confidence 5679999999999999998763 2222 667899999999999999999999999999999998433 33333211
Q ss_pred ---HH--HHhhccCeEEEEEEeecCCC
Q 022890 134 ---LE--KVMGAYGYSIEHILMVDIIP 155 (290)
Q Consensus 134 ---l~--~~l~~~Gi~i~~v~I~~i~~ 155 (290)
++ -.+...|+.|.+|.|+++.|
T Consensus 90 ~~~~r~~~~F~~N~LvIt~vDvqsvEp 116 (118)
T PF11978_consen 90 NGEVRDGLRFPANNLVITSVDVQSVEP 116 (118)
T ss_dssp -E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred CCCccceeEEcCCCeEEEEEeeeEecc
Confidence 11 13455699999999999875
No 37
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=96.40 E-value=0.038 Score=51.88 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHH
Q 022890 174 LASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQ 208 (290)
Q Consensus 174 ~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a 208 (290)
...+-+|++++.+.+..|+|.+++.+++|+|+|++
T Consensus 273 n~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~r 307 (419)
T PRK10930 273 NEVQPRANGQAQRILEEARAYKAQTILEAQGEVAR 307 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 33444555555555555555555555555555543
No 38
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=96.08 E-value=0.023 Score=50.08 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhc
Q 022890 177 VYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKV 227 (290)
Q Consensus 177 ~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~ 227 (290)
...|+.++.+.+.+|++++.+.+.+|+|+|++..+.|+|.+++....+++.
T Consensus 152 ~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~ 202 (262)
T cd03407 152 INAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGL 202 (262)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345666666677778888878888888888888888888888777777664
No 39
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.80 E-value=0.37 Score=46.42 Aligned_cols=76 Identities=12% Similarity=0.121 Sum_probs=48.1
Q ss_pred HhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHhhcC--------CCCcEEE
Q 022890 190 RAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGNS--------SNNTTVF 261 (290)
Q Consensus 190 ~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~--------~~~~~v~ 261 (290)
.++++++++..+++++|++.+..+.+++++.+.+++++...+...... ++..-+++|+.++++ ...|++.
T Consensus 410 ~~~aea~a~~a~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~a~--~~~~~vq~Lp~~~~~~~~~~~~i~~~kV~~ 487 (548)
T COG2268 410 AAKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAAAE--LFKALVQALPEVAEEAAQPMKNIDSEKVRV 487 (548)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHHHHHhhcccccccceeEEe
Confidence 344577777778888888888888888888999999886544432222 222445666655431 1235556
Q ss_pred ecCCCC
Q 022890 262 LPHGPG 267 (290)
Q Consensus 262 lp~~~~ 267 (290)
+|...+
T Consensus 488 i~~~~~ 493 (548)
T COG2268 488 IGGANG 493 (548)
T ss_pred cCCccc
Confidence 665544
No 40
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=94.49 E-value=0.34 Score=39.30 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=62.4
Q ss_pred CcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHHHHHHhhccCeE
Q 022890 67 NVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEELEKVMGAYGYS 144 (290)
Q Consensus 67 ~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~l~~~Gi~ 144 (290)
+....+.+.+.|++.+.... -.++.. .+.+++++...+++.+.+++.+. ++++..++++.++..|..-+ .
T Consensus 76 ~~~~~v~i~i~l~~~n~~~~---~el~~~----~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~ 147 (159)
T COG1580 76 PKDRYVKIAITLEVANKALL---EELEEK----KPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-V 147 (159)
T ss_pred CCcEEEEEEEEEeeCCHHHH---HHHHHh----hHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-e
Confidence 55667888899999863222 222221 25678899999999999999994 99999999999999998876 8
Q ss_pred EEEEEeecCC
Q 022890 145 IEHILMVDII 154 (290)
Q Consensus 145 i~~v~I~~i~ 154 (290)
|.+|.++++.
T Consensus 148 V~dV~fT~fi 157 (159)
T COG1580 148 VKDVLFTNFI 157 (159)
T ss_pred eEEEeeehhh
Confidence 8899888764
No 41
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=94.26 E-value=0.09 Score=45.51 Aligned_cols=48 Identities=21% Similarity=0.193 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHH
Q 022890 168 AAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDG 215 (290)
Q Consensus 168 ~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea 215 (290)
.+|-+++++++.||+++++.+...++.+...+..|.|+|++....+++
T Consensus 179 esEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a 226 (301)
T KOG2620|consen 179 ESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADA 226 (301)
T ss_pred hhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhc
Confidence 344555555666666555555555555555555555555554444433
No 42
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=0.53 Score=41.99 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhh
Q 022890 176 SVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHK 226 (290)
Q Consensus 176 ~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a 226 (290)
....||.++.+.+.+|++++++.+++|+|++++..+.++|.+++ +..+++
T Consensus 181 ~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a 230 (291)
T COG0330 181 KQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARA 230 (291)
T ss_pred HHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhh
Confidence 44567777777899999999999999999999999999999987 444444
No 43
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.94 E-value=2.7 Score=35.66 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=53.5
Q ss_pred eecCCcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHhh-cc
Q 022890 63 KTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMG-AY 141 (290)
Q Consensus 63 ~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l~-~~ 141 (290)
..-||+.+.....+..|-+ ..+.+ .-...+..+-..-++.+..+-+.-.-.+++.+-+.|++.+.+ +-|+ ..
T Consensus 139 vam~gievkakaritvran---i~rlv-ggageetviarvgegivstigss~~h~~vlenpd~isktvl~---kgld~gt 211 (328)
T COG4864 139 VAMNGIEVKAKARITVRAN---IERLV-GGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLE---KGLDSGT 211 (328)
T ss_pred eeccceEEEEEEEEEehhh---HHHHh-CCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHH---ccCCCCc
Confidence 3456666655555544432 22222 222334445444444444444556667888888888877654 2222 23
Q ss_pred CeEEEEEEeecCCCChHHHH
Q 022890 142 GYSIEHILMVDIIPDPAVRK 161 (290)
Q Consensus 142 Gi~i~~v~I~~i~~p~~v~~ 161 (290)
-++|.++.|-|++..+.+-.
T Consensus 212 afeilsidiadvdigkniga 231 (328)
T COG4864 212 AFEILSIDIADVDIGKNIGA 231 (328)
T ss_pred eeEEEEeeeecccccccccc
Confidence 58999999999998876543
No 44
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=90.34 E-value=3.9 Score=31.16 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 022890 162 AMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLG 201 (290)
Q Consensus 162 ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~ 201 (290)
-|+.-+.||+++..-+.+|..++...+..|+.+|+..+..
T Consensus 7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~ 46 (113)
T TIGR01147 7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEK 46 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888888888888888888775543
No 45
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=88.38 E-value=14 Score=31.04 Aligned_cols=51 Identities=18% Similarity=0.125 Sum_probs=26.1
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHH
Q 022890 159 VRKAMNEINA--AQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQR 209 (290)
Q Consensus 159 v~~ai~~~~~--Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~ 209 (290)
+.+.|.+... |+++...-+.+|+.++...+..|+.+|+.....|+.+++..
T Consensus 8 l~dki~~~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~~ 60 (198)
T PRK01558 8 LINKIKKDGLEEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEANDY 60 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444333 33444444445555566666666666666655555555433
No 46
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=88.22 E-value=12 Score=30.14 Aligned_cols=10 Identities=30% Similarity=1.085 Sum_probs=5.8
Q ss_pred HHHHHHHHHH
Q 022890 240 MITQYFDTIK 249 (290)
Q Consensus 240 l~~~~le~l~ 249 (290)
+..+|++..+
T Consensus 131 iAsk~~~~~~ 140 (154)
T PRK06568 131 LVSEYFQSVK 140 (154)
T ss_pred HHHHHHHHhc
Confidence 4566666544
No 47
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=86.91 E-value=3.2 Score=37.68 Aligned_cols=87 Identities=22% Similarity=0.179 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHhhc--
Q 022890 176 SVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGN-- 253 (290)
Q Consensus 176 ~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~-- 253 (290)
....||+++...+..|++||+..+...++||.+....+.+++++....+.++.. ..++.-+ ..-|++++.++.
T Consensus 294 ~~klaEAnk~~~~~qaqAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~~--y~~aa~l---~~lLealp~Ia~~i 368 (428)
T KOG2668|consen 294 ETKLAEANKELYNKQAQAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQA--YAQAAYL---RTLLEALPMIAAEI 368 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHH--hhhhHHH---HHHHHHHHHHHHHh
Confidence 344577777778888888888888888888888888888888777777766543 2222222 245677776643
Q ss_pred ----CCCCcEEEecCCCC
Q 022890 254 ----SSNNTTVFLPHGPG 267 (290)
Q Consensus 254 ----~~~~~~v~lp~~~~ 267 (290)
..-+++.++.++++
T Consensus 369 a~plaktnkI~v~s~g~~ 386 (428)
T KOG2668|consen 369 AAPLAKTNKISVWSHGGG 386 (428)
T ss_pred ccchhhcCeEEEEecCCc
Confidence 12358888888743
No 48
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=86.11 E-value=5.6 Score=33.45 Aligned_cols=30 Identities=20% Similarity=0.034 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHhcchhhHHHH
Q 022890 180 GEAEKILQVKRAEAEAEAKYLGGVGVARQR 209 (290)
Q Consensus 180 Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~ 209 (290)
|+.++...+..|+.+|+..+.+|+.+|+..
T Consensus 20 A~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i 49 (198)
T PRK01558 20 AERLANEIILEAKEEAEEIIAKAEEEAKEL 49 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444433
No 49
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=85.59 E-value=2.5 Score=35.15 Aligned_cols=25 Identities=12% Similarity=-0.055 Sum_probs=19.0
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHHH
Q 022890 195 AEAKYLGGVGVARQRQAITDGLREN 219 (290)
Q Consensus 195 ae~~~~~A~a~A~a~~~~aea~a~~ 219 (290)
++..+.+|+++|++..+.|+|++++
T Consensus 171 a~~~~~~a~~ea~~~~~~A~gea~a 195 (196)
T cd03401 171 AKFVVEKAEQEKQAAVIRAEGEAEA 195 (196)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 3345667888888888888888764
No 50
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=85.00 E-value=13 Score=27.10 Aligned_cols=51 Identities=14% Similarity=0.330 Sum_probs=41.5
Q ss_pred HHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHHHHHHhhccCeEEEEEEeecC
Q 022890 101 AYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEELEKVMGAYGYSIEHILMVDI 153 (290)
Q Consensus 101 ~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i 153 (290)
+.+++.+...++.++.+++.+. +..+.+++.+.+++.+.+- .|.+|.++++
T Consensus 44 ~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~--~V~~V~ft~f 96 (99)
T PF03748_consen 44 PRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKG--KVKDVYFTDF 96 (99)
T ss_pred HHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccC--cEEEEEEEEE
Confidence 4677888888899999999974 9999999999999988543 3777777764
No 51
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=84.99 E-value=6.9 Score=30.90 Aligned_cols=53 Identities=13% Similarity=0.266 Sum_probs=44.3
Q ss_pred HHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHHHHHHhhcc-C-eEEEEEEeecC
Q 022890 101 AYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEELEKVMGAY-G-YSIEHILMVDI 153 (290)
Q Consensus 101 ~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~l~~~-G-i~i~~v~I~~i 153 (290)
+.+++.+-..++..+.+++.+. |+.+.+++.+.++..+.+. | -.|++|.++++
T Consensus 78 P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 78 PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 5678888889999999999875 9999999999999999764 3 35888888765
No 52
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=84.55 E-value=15 Score=27.49 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 022890 161 KAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEA 197 (290)
Q Consensus 161 ~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~ 197 (290)
+.|.+.-.|+.+.+..+..|+.++...+..|+.+|+.
T Consensus 3 e~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k 39 (103)
T PRK08404 3 DVIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKK 39 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566555555555555555555555544444
No 53
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=84.36 E-value=9 Score=31.67 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=55.9
Q ss_pred ceeecCC--cEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHHHHHHHHh
Q 022890 61 ETKTKDN--VFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVM 138 (290)
Q Consensus 61 ~v~T~D~--~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~~~l~~~l 138 (290)
.+.++|. ..+-+.+++.|...+++ ..-.+.. =.+.++..+...++..+.+|+. ++.+|.++++++++..|
T Consensus 92 ~vNLaD~~~~r~~vki~l~~e~~d~~---l~~EL~~----r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL 163 (181)
T PRK06654 92 RGNTADTPPKTFVVKLALGYAENNKN---ILNELGR----RKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSIL 163 (181)
T ss_pred EEEcCCCCCceEEEEEEEEEEcCCHH---HHHHHHh----ccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhc
Confidence 4455555 33446667777766422 1111111 1256777788888899999999 88999999999999988
Q ss_pred hccCeEEEEEEeecC
Q 022890 139 GAYGYSIEHILMVDI 153 (290)
Q Consensus 139 ~~~Gi~i~~v~I~~i 153 (290)
.+- .|.+|.+++.
T Consensus 164 ~~G--kV~~VYFTeF 176 (181)
T PRK06654 164 RNG--EIKDIAFTQI 176 (181)
T ss_pred CCC--ceEEEEEEEE
Confidence 763 4677776664
No 54
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=83.74 E-value=26 Score=29.73 Aligned_cols=44 Identities=20% Similarity=0.076 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHH
Q 022890 169 AQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAI 212 (290)
Q Consensus 169 Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~ 212 (290)
|+.+...-+.+|+.++...+..|+.+++..+..|+.+++..+..
T Consensus 25 A~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r 68 (207)
T PRK01005 25 AEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQ 68 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555566666666666666665555555433
No 55
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=82.22 E-value=3.8 Score=32.53 Aligned_cols=51 Identities=12% Similarity=0.290 Sum_probs=42.4
Q ss_pred HHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHHHHHHhhccCeEEEEEEeecC
Q 022890 101 AYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEELEKVMGAYGYSIEHILMVDI 153 (290)
Q Consensus 101 ~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i 153 (290)
+.+++.+-..++..+.+|+.+. |+.+.+++.+.++..+.+ | .|.+|.+++.
T Consensus 87 p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 87 FQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred hhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 3577777788889999999875 999999999999998876 4 6888888764
No 56
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=81.62 E-value=29 Score=28.71 Aligned_cols=29 Identities=34% Similarity=0.257 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 022890 169 AQRLQLASVYKGEAEKILQVKRAEAEAEA 197 (290)
Q Consensus 169 Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~ 197 (290)
.+.++++..+.+++++......+++++++
T Consensus 12 ~~a~~e~~~I~~ea~~~~~~i~~ea~~~a 40 (188)
T PRK02292 12 DEARARASEIRAEADEEAEEIIAEAEADA 40 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333334444333
No 57
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=81.33 E-value=18 Score=30.62 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=56.4
Q ss_pred CceeecCCcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHHHHHH
Q 022890 60 IETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEELEKV 137 (290)
Q Consensus 60 ~~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~ 137 (290)
.++.|+||..+.+-+.+.-.-. .-.+-...|+......+...+++++++++... -+.|..++....+.-
T Consensus 100 vdvkTkDGy~lRv~~i~~T~~r---------a~~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k~I 170 (203)
T PRK04057 100 VDVTTKDGYKVRVKPVALTTKR---------ARTSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAKKI 170 (203)
T ss_pred EEEEcCCCCEEEEEEEEEEchh---------hhhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhhhc
Confidence 3789999999888776543321 11234678999999999999999999999987 466766666665554
Q ss_pred hhccCeEEEEEEe
Q 022890 138 MGAYGYSIEHILM 150 (290)
Q Consensus 138 l~~~Gi~i~~v~I 150 (290)
.--.-++|..+.+
T Consensus 171 yPlr~veIrKvkv 183 (203)
T PRK04057 171 YPLRRVEIRKSKV 183 (203)
T ss_pred cCcceEEEEEEEE
Confidence 3222344444444
No 58
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=80.35 E-value=3.8 Score=34.55 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=16.9
Q ss_pred HHhHHHHHHHHhcchhhHHHHHHHHHHH
Q 022890 189 KRAEAEAEAKYLGGVGVARQRQAITDGL 216 (290)
Q Consensus 189 ~~Aeaeae~~~~~A~a~A~a~~~~aea~ 216 (290)
..|+.++++.+.+|+|++++.++.++|+
T Consensus 154 ~~A~~~~~a~i~~A~ge~~a~~~~aea~ 181 (215)
T cd03403 154 AEAEREKRAKIIEAEGERQAAILLAEAA 181 (215)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3455556666666666666666655543
No 59
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=79.93 E-value=16 Score=27.30 Aligned_cols=32 Identities=16% Similarity=0.067 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcchhhHHHHH
Q 022890 179 KGEAEKILQVKRAEAEAEAKYLGGVGVARQRQ 210 (290)
Q Consensus 179 ~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~ 210 (290)
+|+......+..|+.+++..+..|+.+.+..+
T Consensus 36 ~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek 67 (103)
T PRK08404 36 EAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEA 67 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555666666665555555444443
No 60
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=79.80 E-value=15 Score=32.81 Aligned_cols=100 Identities=15% Similarity=0.174 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhccCCCHHHHHhhH--HHHH----HHHHHHHHHHhhccCeE-EEEEEeecCCCCh-HHHHHHHHHHHHH
Q 022890 99 IQAYVFDVVRALVPRMTLDELFEQK--GEVA----KAVLEELEKVMGAYGYS-IEHILMVDIIPDP-AVRKAMNEINAAQ 170 (290)
Q Consensus 99 l~~~~~~~lr~~i~~~~~~~i~~~R--~~i~----~~v~~~l~~~l~~~Gi~-i~~v~I~~i~~p~-~v~~ai~~~~~Ae 170 (290)
....+...+|+. +.++++.+ +++- +.+...+...+.+.=-. =..+.|.++.+-+ .+=+.+.+.+ +
T Consensus 94 ~~~~I~~~Vrsa-----vr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~V~~af--e 166 (280)
T cd03406 94 DKTLIFNKIHHE-----LNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEAIRRNY--E 166 (280)
T ss_pred HHHHHHHHHHHH-----HHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHHHHHHH--H
Confidence 455555555555 34444442 2222 35566666655553111 1267788887643 3445554433 2
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHhHHHHHHHHhcchhhHHHHHH
Q 022890 171 RLQLASVYKGEAEKI--------LQVKRAEAEAEAKYLGGVGVARQRQA 211 (290)
Q Consensus 171 ~~~~a~~~~Ae~~~~--------~~i~~Aeaeae~~~~~A~a~A~a~~~ 211 (290)
+.+||.++. .....||+++.+.+++|+++|.--++
T Consensus 167 ------rM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~ 209 (280)
T cd03406 167 ------LMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKI 209 (280)
T ss_pred ------HHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHH
Confidence 223344444 77888899998899999888865544
No 61
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=78.65 E-value=14 Score=30.06 Aligned_cols=51 Identities=10% Similarity=0.216 Sum_probs=41.8
Q ss_pred HHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHHHHHHhhccCeEEEEEEeecC
Q 022890 101 AYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEELEKVMGAYGYSIEHILMVDI 153 (290)
Q Consensus 101 ~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i 153 (290)
+.+++.+-..++..+.+|+.+. +..|.+++.+.++..+.+- .|.+|.++++
T Consensus 111 p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~F 163 (166)
T PRK12785 111 PRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEV 163 (166)
T ss_pred hHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEee
Confidence 4567777778889999999875 8999999999999988763 4888888765
No 62
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=78.65 E-value=24 Score=28.61 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=42.7
Q ss_pred HHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHHHHHHhhccC--eEEEEEEeecC
Q 022890 101 AYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEELEKVMGAYG--YSIEHILMVDI 153 (290)
Q Consensus 101 ~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~l~~~G--i~i~~v~I~~i 153 (290)
+.+++.+-..++..+.+++.+. +..+.+++.+.++..+..-+ -.|.+|.++++
T Consensus 103 p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 103 PEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred HHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 4577777778899999999774 89999999999999887542 45888888765
No 63
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=78.26 E-value=13 Score=30.80 Aligned_cols=9 Identities=22% Similarity=-0.057 Sum_probs=3.8
Q ss_pred HHHHHHHhh
Q 022890 244 YFDTIKDLG 252 (290)
Q Consensus 244 ~le~l~~~~ 252 (290)
|.+.|.++.
T Consensus 101 y~~~l~~li 109 (188)
T PRK02292 101 REELTKSLL 109 (188)
T ss_pred HHHHHHHHH
Confidence 444444443
No 64
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=76.85 E-value=23 Score=26.96 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHH
Q 022890 174 LASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQA 211 (290)
Q Consensus 174 ~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~ 211 (290)
......||.++...+..|+..+..++..|+.+|+....
T Consensus 8 IQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~ 45 (113)
T TIGR01147 8 IQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVE 45 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777666666666666655543
No 65
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=74.19 E-value=3.5 Score=35.11 Aligned_cols=53 Identities=26% Similarity=0.190 Sum_probs=35.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHH
Q 022890 155 PDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQ 208 (290)
Q Consensus 155 ~p~~v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a 208 (290)
+.+.+..---.++.||+-+- -..+||.+++..++.||+|++++.+.+++-|.+
T Consensus 179 Ft~AvE~KQVAQQEAErarF-vVeKAeQqk~aavIsAEGds~aA~li~~sla~a 231 (271)
T KOG3083|consen 179 FTEAVEAKQVAQQEAERARF-VVEKAEQQKKAAVISAEGDSKAAELIANSLATA 231 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhheeecccchHHHHHHHHHHhhc
Confidence 45555555555666776553 345677777778888888888888877766644
No 66
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=73.69 E-value=8.7 Score=28.61 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 022890 163 MNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLG 201 (290)
Q Consensus 163 i~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~ 201 (290)
|.....|+.++..-+.+|..++...+..|+.+|+..+..
T Consensus 6 Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~ 44 (105)
T PF03179_consen 6 IQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEE 44 (105)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777777777776665443
No 67
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=73.31 E-value=37 Score=25.58 Aligned_cols=39 Identities=21% Similarity=0.151 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 022890 162 AMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYL 200 (290)
Q Consensus 162 ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~ 200 (290)
.+...-.|+......+.+|.-++...+..|+.++...+.
T Consensus 8 vl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiie 46 (108)
T COG2811 8 VLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIE 46 (108)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555444444444444333
No 68
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=73.14 E-value=10 Score=31.50 Aligned_cols=51 Identities=14% Similarity=0.307 Sum_probs=42.9
Q ss_pred HHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHHHHHHhhccCeEEEEEEeecC
Q 022890 101 AYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEELEKVMGAYGYSIEHILMVDI 153 (290)
Q Consensus 101 ~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i 153 (290)
+.+++.+-..++..+.+|+.+. +..|.+++.+.++..+.+- .|.+|.++++
T Consensus 127 p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~g--~V~~VyFT~F 179 (182)
T PRK08455 127 PVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLIDG--FIKNVFFTDF 179 (182)
T ss_pred hHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhccC--ceeEEEeEee
Confidence 5678888888999999999876 8999999999999999763 5778887764
No 69
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.98 E-value=7.9 Score=33.04 Aligned_cols=63 Identities=27% Similarity=0.235 Sum_probs=42.7
Q ss_pred eEEEEEEeecCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHH
Q 022890 143 YSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVAR 207 (290)
Q Consensus 143 i~i~~v~I~~i~~p~~v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~ 207 (290)
+.|+.+.+. -.+...++.---..+.|++-+- -..+|+.+++..+.+|++||+++.+.++|.+.
T Consensus 179 VSiT~l~F~-~efTaAiEaKQvA~QeAqRA~F-~VekA~qek~~~ivrAqGEaksAqliGeAi~n 241 (290)
T KOG3090|consen 179 VSITELTFG-KEFTAAIEAKQVAAQEAQRAKF-IVEKAEQEKQSAIVRAQGEAKSAQLIGEAIKN 241 (290)
T ss_pred ceeeeeecC-HHHHHHHHHHHHHHHHHhhhhh-hhHHHHHhhhhhhhhhccchHHHHHHHHHHhC
Confidence 556666654 4566666655555666666543 34567777888888888888888888777654
No 70
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=70.61 E-value=32 Score=24.49 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 022890 169 AQRLQLASVYKGEAEKILQVKRAEAEAEA 197 (290)
Q Consensus 169 Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~ 197 (290)
++.+.+..+..|+.++...+..|+.+++.
T Consensus 7 ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~ 35 (85)
T TIGR02926 7 AEEDAEELIEEAEEERKQRIAEAREEARE 35 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 71
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=69.85 E-value=67 Score=27.12 Aligned_cols=9 Identities=0% Similarity=0.342 Sum_probs=4.4
Q ss_pred CHHHHHhhH
Q 022890 115 TLDELFEQK 123 (290)
Q Consensus 115 ~~~~i~~~R 123 (290)
++..++..|
T Consensus 72 Pi~~~L~~R 80 (205)
T PRK06231 72 PTQRFLNKR 80 (205)
T ss_pred HHHHHHHHH
Confidence 344555554
No 72
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=69.33 E-value=69 Score=27.05 Aligned_cols=17 Identities=12% Similarity=0.335 Sum_probs=8.8
Q ss_pred CHHHHHhhH-HHHHHHHH
Q 022890 115 TLDELFEQK-GEVAKAVL 131 (290)
Q Consensus 115 ~~~~i~~~R-~~i~~~v~ 131 (290)
++..++..| +.|...+.
T Consensus 77 pI~~vLe~R~~~I~~~L~ 94 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLD 94 (204)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666665 33444443
No 73
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=68.42 E-value=16 Score=29.89 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=43.2
Q ss_pred HHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHHHHHHhhcc-C-eEEEEEEeecC
Q 022890 101 AYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEELEKVMGAY-G-YSIEHILMVDI 153 (290)
Q Consensus 101 ~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~l~~~-G-i~i~~v~I~~i 153 (290)
+.+++.+-..++..+.+++.+. ++.+.+++.++++..++.. | -.|.+|.++++
T Consensus 111 p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f 167 (170)
T PRK05696 111 PLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF 167 (170)
T ss_pred HHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence 5678888889999999999875 8999999999998888764 3 25888888765
No 74
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=68.34 E-value=37 Score=28.47 Aligned_cols=79 Identities=16% Similarity=0.390 Sum_probs=52.7
Q ss_pred ceeecCCcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHHHHHHh
Q 022890 61 ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEELEKVM 138 (290)
Q Consensus 61 ~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~l 138 (290)
++.|+||..+.+-+...=+=. .-..-...|+..+...+.+.++..++++++.. -+.+..+|....+..
T Consensus 107 dvkT~DGy~lRvf~i~fT~~r---------a~~sq~~~IRk~m~~ii~~~~~~~~~~e~V~~li~~~i~~eI~k~~k~I- 176 (194)
T PF01015_consen 107 DVKTKDGYLLRVFCIAFTKKR---------AKSSQIKAIRKKMVEIITEEASELDLKELVKKLIPGSIGKEIEKACKKI- 176 (194)
T ss_dssp EEEETTTEEEEEEEEEEE-------------TCHHHHHHHHHHHHHHHHHCCTSHHHHHHHHHCTTHHHHHHHHHHCTT-
T ss_pred EEEcCCCcEEEEEEEEEEeec---------ccchHHHHHHHHHHHHHHHHhccCcHHHHHHHHccchHHHHHHHHhccc-
Confidence 689999988876655432211 11233578999999999999999999999987 566666666655443
Q ss_pred hccCeEEEEEEeecC
Q 022890 139 GAYGYSIEHILMVDI 153 (290)
Q Consensus 139 ~~~Gi~i~~v~I~~i 153 (290)
..+.+|.|+.+
T Consensus 177 ----yPl~~v~IrKv 187 (194)
T PF01015_consen 177 ----YPLRNVEIRKV 187 (194)
T ss_dssp ------EEEEEEEEE
T ss_pred ----cccceEEEEEE
Confidence 34455555544
No 75
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=66.53 E-value=80 Score=26.76 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchh
Q 022890 169 AQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVG 204 (290)
Q Consensus 169 Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a 204 (290)
|+.+++.-+.+|+.++...+..|+.+++..+.+++.
T Consensus 36 Ak~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s 71 (207)
T PRK01005 36 AKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGES 71 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555554444333
No 76
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=65.85 E-value=25 Score=26.06 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHH
Q 022890 176 SVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQ 210 (290)
Q Consensus 176 ~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~ 210 (290)
.+.+||.++...+..|+.++...+..|+.+|+...
T Consensus 8 ~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei 42 (105)
T PF03179_consen 8 QLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEI 42 (105)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666555555555555443
No 77
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=65.28 E-value=89 Score=27.10 Aligned_cols=37 Identities=22% Similarity=0.123 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHH
Q 022890 175 ASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQA 211 (290)
Q Consensus 175 a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~ 211 (290)
.+..+|+..+...+..|+.++++.+..|+.+.+..+.
T Consensus 79 ~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~ 115 (246)
T TIGR03321 79 KAKEEAQAERQRLLDEAREEADEIREKWQEALRREQA 115 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666677776666666555544443
No 78
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=64.27 E-value=77 Score=25.75 Aligned_cols=10 Identities=10% Similarity=0.511 Sum_probs=5.5
Q ss_pred CCHHHHHhhH
Q 022890 114 MTLDELFEQK 123 (290)
Q Consensus 114 ~~~~~i~~~R 123 (290)
-++.+++..|
T Consensus 45 kPi~~~l~~R 54 (167)
T PRK08475 45 KPLKNFYKSR 54 (167)
T ss_pred HHHHHHHHHH
Confidence 3455566664
No 79
>PTZ00491 major vault protein; Provisional
Probab=63.39 E-value=1.3e+02 Score=31.11 Aligned_cols=10 Identities=0% Similarity=-0.061 Sum_probs=5.4
Q ss_pred EEEEEEEEec
Q 022890 73 LCSIQYRIVR 82 (290)
Q Consensus 73 ~~~v~yrI~~ 82 (290)
++...|.+.|
T Consensus 561 ~~~k~Fsv~D 570 (850)
T PTZ00491 561 DAQKCFSVPD 570 (850)
T ss_pred hHhheeccCc
Confidence 3445666654
No 80
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=63.00 E-value=69 Score=30.42 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=7.3
Q ss_pred HHHHHHHHHhh
Q 022890 242 TQYFDTIKDLG 252 (290)
Q Consensus 242 ~~~le~l~~~~ 252 (290)
.+|++++...+
T Consensus 254 ekwl~aInTtf 264 (630)
T KOG0742|consen 254 EKWLEAINTTF 264 (630)
T ss_pred HHHHHHHhhhH
Confidence 46777776654
No 81
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=62.67 E-value=92 Score=26.11 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 022890 207 RQRQAITDGLRENILN 222 (290)
Q Consensus 207 ~a~~~~aea~a~~~~~ 222 (290)
++++..-++.-+.++.
T Consensus 70 e~r~~~Le~~ee~l~~ 85 (194)
T COG1390 70 EARRKLLEAKEEILES 85 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 82
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=62.64 E-value=84 Score=25.62 Aligned_cols=9 Identities=11% Similarity=0.294 Sum_probs=5.0
Q ss_pred CHHHHHhhH
Q 022890 115 TLDELFEQK 123 (290)
Q Consensus 115 ~~~~i~~~R 123 (290)
++..++..|
T Consensus 42 pi~~~l~~R 50 (175)
T PRK14472 42 PILSALEER 50 (175)
T ss_pred HHHHHHHHH
Confidence 455566664
No 83
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=62.61 E-value=79 Score=25.29 Aligned_cols=8 Identities=13% Similarity=0.505 Sum_probs=3.3
Q ss_pred HHHHHhhH
Q 022890 116 LDELFEQK 123 (290)
Q Consensus 116 ~~~i~~~R 123 (290)
+..++..|
T Consensus 47 i~~~l~~R 54 (156)
T CHL00118 47 LLKVLDER 54 (156)
T ss_pred HHHHHHHH
Confidence 33444443
No 84
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=62.30 E-value=80 Score=25.25 Aligned_cols=8 Identities=38% Similarity=0.484 Sum_probs=2.9
Q ss_pred HhHHHHHH
Q 022890 190 RAEAEAEA 197 (290)
Q Consensus 190 ~Aeaeae~ 197 (290)
.|+.++..
T Consensus 85 ~A~~ea~~ 92 (156)
T CHL00118 85 KARKEAQL 92 (156)
T ss_pred HHHHHHHH
Confidence 33333333
No 85
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=62.24 E-value=76 Score=24.98 Aligned_cols=10 Identities=10% Similarity=0.381 Sum_probs=5.1
Q ss_pred CHHHHHhhHH
Q 022890 115 TLDELFEQKG 124 (290)
Q Consensus 115 ~~~~i~~~R~ 124 (290)
++..++..|.
T Consensus 31 Pi~~~l~~R~ 40 (141)
T PRK08476 31 PLLKFMDNRN 40 (141)
T ss_pred HHHHHHHHHH
Confidence 4445556653
No 86
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=62.16 E-value=86 Score=25.58 Aligned_cols=10 Identities=10% Similarity=0.471 Sum_probs=6.0
Q ss_pred CCHHHHHhhH
Q 022890 114 MTLDELFEQK 123 (290)
Q Consensus 114 ~~~~~i~~~R 123 (290)
-++..++..|
T Consensus 41 ~pi~~~l~~R 50 (173)
T PRK13453 41 GPLKDVMDKR 50 (173)
T ss_pred HHHHHHHHHH
Confidence 4456666665
No 87
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=61.40 E-value=1.3e+02 Score=28.73 Aligned_cols=16 Identities=6% Similarity=0.380 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhhc
Q 022890 238 LIMITQYFDTIKDLGN 253 (290)
Q Consensus 238 ~~l~~~~le~l~~~~~ 253 (290)
..+..++++-+..+..
T Consensus 144 ~~lId~~i~~l~~~~~ 159 (445)
T PRK13428 144 SATVDRFLDELDAMAP 159 (445)
T ss_pred HHHHHHHHHHhhccCC
Confidence 4456788888887755
No 88
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=61.31 E-value=67 Score=24.06 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 022890 163 MNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYL 200 (290)
Q Consensus 163 i~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~ 200 (290)
|..-.+||.++...+.+|...+...+.+|+-||+..+.
T Consensus 8 IqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie 45 (108)
T KOG1772|consen 8 IQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIE 45 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777776666777777777777777777766544
No 89
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=61.15 E-value=93 Score=25.62 Aligned_cols=21 Identities=10% Similarity=0.333 Sum_probs=12.4
Q ss_pred cCCCHHHHHhhH-HHHHHHHHH
Q 022890 112 PRMTLDELFEQK-GEVAKAVLE 132 (290)
Q Consensus 112 ~~~~~~~i~~~R-~~i~~~v~~ 132 (290)
.--++..++..| ..|...+.+
T Consensus 45 l~kPI~~~l~~R~~~I~~~l~~ 66 (184)
T CHL00019 45 GKGVLSDLLDNRKQTILNTIRN 66 (184)
T ss_pred hHhHHHHHHHHHHHHHHHHHHH
Confidence 346677788885 445444443
No 90
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=61.07 E-value=63 Score=24.37 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh------cchhhHHHHHHHHHHHHHHHHHHHh
Q 022890 166 INAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYL------GGVGVARQRQAITDGLRENILNFSH 225 (290)
Q Consensus 166 ~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~------~A~a~A~a~~~~aea~a~~~~~~~~ 225 (290)
...|+-++...+..|..++...+..|+.+|+.... +-+++.++..++++|.+++-..+++
T Consensus 23 IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~~~k 88 (108)
T COG2811 23 IEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAILSK 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555566666666555555555544211 1233444455556666555444443
No 91
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=59.47 E-value=96 Score=25.25 Aligned_cols=28 Identities=14% Similarity=-0.020 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcchhhH
Q 022890 179 KGEAEKILQVKRAEAEAEAKYLGGVGVA 206 (290)
Q Consensus 179 ~Ae~~~~~~i~~Aeaeae~~~~~A~a~A 206 (290)
+|+..+...+..|+.++++.+..|+.+.
T Consensus 94 ea~~~~~~~~~~A~~ea~~~~~~a~~~i 121 (173)
T PRK13460 94 DALKLKNKLLEETNNEVKAQKDQAVKEI 121 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444433
No 92
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=59.30 E-value=1.2e+02 Score=26.30 Aligned_cols=13 Identities=15% Similarity=0.485 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHh
Q 022890 239 IMITQYFDTIKDL 251 (290)
Q Consensus 239 ~l~~~~le~l~~~ 251 (290)
.+..++++.+..+
T Consensus 148 ~lid~~i~~l~~l 160 (246)
T TIGR03321 148 RMVDVFVQRLRTL 160 (246)
T ss_pred HHHHHHHHHhhcC
Confidence 4455666655444
No 93
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=58.15 E-value=80 Score=27.24 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=7.6
Q ss_pred HHhHHHHHHHHhcchhh
Q 022890 189 KRAEAEAEAKYLGGVGV 205 (290)
Q Consensus 189 ~~Aeaeae~~~~~A~a~ 205 (290)
..||.++..++++|+-.
T Consensus 205 KeAETerkkAviEAEK~ 221 (322)
T KOG2962|consen 205 KEAETERKKAVIEAEKN 221 (322)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 94
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=57.98 E-value=96 Score=24.78 Aligned_cols=9 Identities=0% Similarity=0.438 Sum_probs=5.1
Q ss_pred CHHHHHhhH
Q 022890 115 TLDELFEQK 123 (290)
Q Consensus 115 ~~~~i~~~R 123 (290)
++..++..|
T Consensus 29 pi~~~l~~R 37 (159)
T PRK13461 29 KIKAVIDSR 37 (159)
T ss_pred HHHHHHHHH
Confidence 455566664
No 95
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=57.00 E-value=1.1e+02 Score=25.39 Aligned_cols=25 Identities=24% Similarity=0.155 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHh
Q 022890 176 SVYKGEAEKILQVKRAEAEAEAKYL 200 (290)
Q Consensus 176 ~~~~Ae~~~~~~i~~Aeaeae~~~~ 200 (290)
-+..|+.++...+..|+.+|++.+.
T Consensus 35 IL~~A~~qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 35 ILEDARQQAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555554444
No 96
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=56.90 E-value=1e+02 Score=24.88 Aligned_cols=16 Identities=6% Similarity=0.225 Sum_probs=7.8
Q ss_pred CHHHHHhhH-HHHHHHH
Q 022890 115 TLDELFEQK-GEVAKAV 130 (290)
Q Consensus 115 ~~~~i~~~R-~~i~~~v 130 (290)
++..++..| +.|...+
T Consensus 34 pi~~~le~R~~~I~~~l 50 (167)
T PRK14475 34 ALAGALDAYAAKIQAEL 50 (167)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 345566664 3344333
No 97
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=56.73 E-value=1.1e+02 Score=25.16 Aligned_cols=10 Identities=0% Similarity=0.331 Sum_probs=5.8
Q ss_pred CHHHHHhhHH
Q 022890 115 TLDELFEQKG 124 (290)
Q Consensus 115 ~~~~i~~~R~ 124 (290)
++..++..|.
T Consensus 55 PI~~~l~~R~ 64 (181)
T PRK13454 55 RIGAVLAERQ 64 (181)
T ss_pred HHHHHHHHHH
Confidence 4556666653
No 98
>PLN03086 PRLI-interacting factor K; Provisional
Probab=56.33 E-value=52 Score=32.37 Aligned_cols=11 Identities=27% Similarity=0.468 Sum_probs=7.8
Q ss_pred CCCcEEEecCC
Q 022890 255 SNNTTVFLPHG 265 (290)
Q Consensus 255 ~~~~~v~lp~~ 265 (290)
+++..|+||..
T Consensus 89 ~~GdKI~LPpS 99 (567)
T PLN03086 89 GNGDKIKLPPS 99 (567)
T ss_pred CCCCeEEcCHH
Confidence 45667888875
No 99
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=55.54 E-value=45 Score=27.83 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 022890 168 AAQRLQLASVYKGEAEKILQVKRAEAE 194 (290)
Q Consensus 168 ~Ae~~~~a~~~~Ae~~~~~~i~~Aeae 194 (290)
.|+++++.-+..|+.+++..+..|+.+
T Consensus 38 ~A~~qA~~Il~~Ae~eAe~l~~~a~e~ 64 (191)
T PF06188_consen 38 DARQQAEQILQQAEEEAEALLEQAYEQ 64 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666665555534333
No 100
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=55.40 E-value=1.4e+02 Score=25.99 Aligned_cols=34 Identities=3% Similarity=-0.022 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHH
Q 022890 176 SVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQR 209 (290)
Q Consensus 176 ~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~ 209 (290)
+..+|+.++...+..|+.++++.+..++.+.+..
T Consensus 80 A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~E 113 (250)
T PRK14474 80 AQEAADEQRQHLLNEAREDVATARDEWLEQLERE 113 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666665544443
No 101
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=55.00 E-value=2e+02 Score=27.49 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=7.6
Q ss_pred HHHHHhhH-HHHHHHHH
Q 022890 116 LDELFEQK-GEVAKAVL 131 (290)
Q Consensus 116 ~~~i~~~R-~~i~~~v~ 131 (290)
+..++..| +.|.+.+.
T Consensus 26 i~~~l~~R~~~I~~~L~ 42 (445)
T PRK13428 26 VRRLMAARQDTVRQQLA 42 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556664 33444333
No 102
>PRK09098 type III secretion system protein HrpB; Validated
Probab=54.57 E-value=64 Score=27.87 Aligned_cols=34 Identities=26% Similarity=0.070 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhH
Q 022890 173 QLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVA 206 (290)
Q Consensus 173 ~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A 206 (290)
++.-+.+|+.+++..+..|+.+|++.+.+|+.+.
T Consensus 41 ~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~ 74 (233)
T PRK09098 41 RDAVLAAARARAERIVAEARAQAEAILEAARREA 74 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666666666666665443
No 103
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=54.53 E-value=1.3e+02 Score=25.45 Aligned_cols=87 Identities=18% Similarity=0.318 Sum_probs=56.5
Q ss_pred eeeCCceeecCCcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHH
Q 022890 56 LDVRIETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEE 133 (290)
Q Consensus 56 ~~~~~~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~ 133 (290)
++...+|.|+||..+.|.+.+.=+=. --..-...|+......+.+..+..++++++.. -+.+..+|.+.
T Consensus 104 Idai~dVkTkDGy~~RV~~~~~T~~r---------a~tSqk~aIRk~M~eii~~~a~e~~f~~fv~~li~g~i~~~I~~~ 174 (214)
T COG1890 104 IDAIVDVKTKDGYVLRVKAMAFTRRR---------AKTSQKRAIRKIMFEIIEEKASELTFEEFVQELIPGRIAAEIEEA 174 (214)
T ss_pred eeeEEEEEecCCcEEEEEEEEEEehh---------cccchHHHHHHHHHHHHHHHhccCCHHHHHHHHhhhhHHHHHHHH
Confidence 34444899999998887765432211 11234678999999999999999999999987 45566666555
Q ss_pred HHHHhhccCeEEEEEEee
Q 022890 134 LEKVMGAYGYSIEHILMV 151 (290)
Q Consensus 134 l~~~l~~~Gi~i~~v~I~ 151 (290)
-+...==.-++|..+.+.
T Consensus 175 akkIyPLr~veIrK~kvl 192 (214)
T COG1890 175 AKKIYPLRKVEIRKSKVL 192 (214)
T ss_pred hhhcccchheEEEeeeee
Confidence 444321123555555443
No 104
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=54.45 E-value=1.1e+02 Score=24.51 Aligned_cols=9 Identities=0% Similarity=0.099 Sum_probs=4.6
Q ss_pred CHHHHHhhH
Q 022890 115 TLDELFEQK 123 (290)
Q Consensus 115 ~~~~i~~~R 123 (290)
++..++..|
T Consensus 32 pi~~~l~~R 40 (164)
T PRK14471 32 PILGAVKER 40 (164)
T ss_pred HHHHHHHHH
Confidence 344555554
No 105
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=53.58 E-value=1.2e+02 Score=24.54 Aligned_cols=6 Identities=0% Similarity=0.208 Sum_probs=2.2
Q ss_pred HHHHHh
Q 022890 246 DTIKDL 251 (290)
Q Consensus 246 e~l~~~ 251 (290)
+.-.++
T Consensus 136 ~~A~ki 141 (167)
T PRK14475 136 QAAETV 141 (167)
T ss_pred HHHHHH
Confidence 333333
No 106
>PRK09098 type III secretion system protein HrpB; Validated
Probab=52.29 E-value=88 Score=27.00 Aligned_cols=29 Identities=17% Similarity=0.044 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 022890 171 RLQLASVYKGEAEKILQVKRAEAEAEAKY 199 (290)
Q Consensus 171 ~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~ 199 (290)
.+.+.-+.+|+.++...+..|+.+.+..+
T Consensus 50 ~~A~~Il~~A~~~A~~I~~~A~~e~e~~~ 78 (233)
T PRK09098 50 ARAERIVAEARAQAEAILEAARREADRSA 78 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555555555554433
No 107
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=52.24 E-value=1.3e+02 Score=24.50 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=11.6
Q ss_pred ccCCCHHHHHhhH-HHHHHHHH
Q 022890 111 VPRMTLDELFEQK-GEVAKAVL 131 (290)
Q Consensus 111 i~~~~~~~i~~~R-~~i~~~v~ 131 (290)
+..-++..++.+| ..|.+.+.
T Consensus 39 fl~kpI~~~l~~R~~~I~~~l~ 60 (174)
T PRK07352 39 FGRGFLGKILEERREAILQALK 60 (174)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 3344577777775 44444443
No 108
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=51.70 E-value=1.2e+02 Score=24.14 Aligned_cols=25 Identities=36% Similarity=0.183 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhcc
Q 022890 178 YKGEAEKILQVKRAEAEAEAKYLGG 202 (290)
Q Consensus 178 ~~Ae~~~~~~i~~Aeaeae~~~~~A 202 (290)
..|+.++...+..|+.+++..+.++
T Consensus 64 ~~A~~ea~~ii~~A~~~a~~~~~~a 88 (159)
T PRK09173 64 KEAEKEAADIVAAAEREAEALTAEA 88 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333
No 109
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=51.17 E-value=1.5e+02 Score=24.99 Aligned_cols=8 Identities=13% Similarity=0.036 Sum_probs=3.1
Q ss_pred HHHHHHhh
Q 022890 245 FDTIKDLG 252 (290)
Q Consensus 245 le~l~~~~ 252 (290)
++.-.++.
T Consensus 173 v~iA~kiL 180 (205)
T PRK06231 173 MLAAEELI 180 (205)
T ss_pred HHHHHHHH
Confidence 33334443
No 110
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=50.87 E-value=1.3e+02 Score=24.16 Aligned_cols=9 Identities=11% Similarity=0.375 Sum_probs=4.9
Q ss_pred CHHHHHhhH
Q 022890 115 TLDELFEQK 123 (290)
Q Consensus 115 ~~~~i~~~R 123 (290)
++..++..|
T Consensus 32 pi~~~l~~R 40 (164)
T PRK14473 32 PVLNLLNER 40 (164)
T ss_pred HHHHHHHHH
Confidence 445556665
No 111
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=49.98 E-value=1.4e+02 Score=24.28 Aligned_cols=9 Identities=0% Similarity=0.294 Sum_probs=4.9
Q ss_pred CHHHHHhhH
Q 022890 115 TLDELFEQK 123 (290)
Q Consensus 115 ~~~~i~~~R 123 (290)
++..++..|
T Consensus 40 pi~~~l~~R 48 (173)
T PRK13460 40 VILKALDER 48 (173)
T ss_pred HHHHHHHHH
Confidence 455556664
No 112
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=49.48 E-value=1.2e+02 Score=24.08 Aligned_cols=9 Identities=11% Similarity=0.368 Sum_probs=4.1
Q ss_pred CHHHHHhhH
Q 022890 115 TLDELFEQK 123 (290)
Q Consensus 115 ~~~~i~~~R 123 (290)
++..++..|
T Consensus 28 pi~~~l~~R 36 (156)
T PRK05759 28 PIMKALEER 36 (156)
T ss_pred HHHHHHHHH
Confidence 344445554
No 113
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=48.86 E-value=95 Score=22.02 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhHHHHHHHHhc
Q 022890 181 EAEKILQVKRAEAEAEAKYLG 201 (290)
Q Consensus 181 e~~~~~~i~~Aeaeae~~~~~ 201 (290)
|.+....+..|+.++...+..
T Consensus 8 e~~~~~~l~~A~~ea~~Ii~~ 28 (85)
T TIGR02926 8 EEDAEELIEEAEEERKQRIAE 28 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 114
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=47.44 E-value=1.9e+02 Score=25.17 Aligned_cols=13 Identities=8% Similarity=0.378 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHh
Q 022890 239 IMITQYFDTIKDL 251 (290)
Q Consensus 239 ~l~~~~le~l~~~ 251 (290)
.+..++++.+.++
T Consensus 148 ~lid~~i~~l~~l 160 (250)
T PRK14474 148 QIVGIFIARLEHL 160 (250)
T ss_pred HHHHHHHHHhccc
Confidence 3445566555444
No 115
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=46.76 E-value=1.5e+02 Score=23.82 Aligned_cols=23 Identities=9% Similarity=-0.023 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHh
Q 022890 178 YKGEAEKILQVKRAEAEAEAKYL 200 (290)
Q Consensus 178 ~~Ae~~~~~~i~~Aeaeae~~~~ 200 (290)
.+|+.++...+..|+.+++....
T Consensus 66 ~~Ar~EA~~Ii~~A~~~a~~~~~ 88 (154)
T PRK06568 66 KKLETLRSQMIEESNEVTKKIIQ 88 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 116
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=46.33 E-value=1.7e+02 Score=24.08 Aligned_cols=16 Identities=0% Similarity=0.335 Sum_probs=8.6
Q ss_pred CHHHHHhhH-HHHHHHH
Q 022890 115 TLDELFEQK-GEVAKAV 130 (290)
Q Consensus 115 ~~~~i~~~R-~~i~~~v 130 (290)
++..++..| +.|...+
T Consensus 51 ~v~~~L~~R~~~I~~~l 67 (184)
T PRK13455 51 MIGGMLDKRAEGIRSEL 67 (184)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 356777775 3344333
No 117
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=44.50 E-value=1.8e+02 Score=23.92 Aligned_cols=6 Identities=33% Similarity=0.484 Sum_probs=2.1
Q ss_pred hHHHHH
Q 022890 191 AEAEAE 196 (290)
Q Consensus 191 Aeaeae 196 (290)
|+.+++
T Consensus 114 A~~ea~ 119 (184)
T CHL00019 114 AKEDLE 119 (184)
T ss_pred HHHHHH
Confidence 333333
No 118
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=43.24 E-value=1.5e+02 Score=22.86 Aligned_cols=8 Identities=13% Similarity=0.542 Sum_probs=3.9
Q ss_pred HHHHHhhH
Q 022890 116 LDELFEQK 123 (290)
Q Consensus 116 ~~~i~~~R 123 (290)
+..++..|
T Consensus 30 i~~~l~~R 37 (140)
T PRK07353 30 VGKVVEER 37 (140)
T ss_pred HHHHHHHH
Confidence 44455554
No 119
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=41.54 E-value=2e+02 Score=23.65 Aligned_cols=12 Identities=25% Similarity=0.127 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHh
Q 022890 180 GEAEKILQVKRA 191 (290)
Q Consensus 180 Ae~~~~~~i~~A 191 (290)
|+.++...+..|
T Consensus 95 Ar~EA~~ii~~A 106 (181)
T PRK13454 95 ARAEAQRIVAET 106 (181)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 120
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=41.40 E-value=2e+02 Score=23.60 Aligned_cols=7 Identities=14% Similarity=0.273 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 022890 245 FDTIKDL 251 (290)
Q Consensus 245 le~l~~~ 251 (290)
++.-.++
T Consensus 152 ~~~a~ki 158 (184)
T PRK13455 152 VAAAADV 158 (184)
T ss_pred HHHHHHH
Confidence 3333343
No 121
>PRK15322 invasion protein OrgB; Provisional
Probab=37.78 E-value=2.5e+02 Score=23.74 Aligned_cols=31 Identities=13% Similarity=0.289 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCcEEEecCCC
Q 022890 232 AKEVMDLIMITQYFDTIKDLGNSSNNTTVFLPHGP 266 (290)
Q Consensus 232 ~~~~~~~~l~~~~le~l~~~~~~~~~~~v~lp~~~ 266 (290)
.|+.. +.+...|+-.+++.- ..--++||.+.
T Consensus 91 ~pd~L-L~~le~Wl~~l~~~~---~pL~l~lP~~a 121 (210)
T PRK15322 91 HPETL-LTVLDEWLRDFDKPE---GQLFLTLPVNA 121 (210)
T ss_pred CHHHH-HHHHHHHHHhCcccc---CceeEecChhh
Confidence 45543 344566777666643 23447888875
No 122
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=36.94 E-value=2.2e+02 Score=25.07 Aligned_cols=37 Identities=14% Similarity=-0.067 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 022890 165 EINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLG 201 (290)
Q Consensus 165 ~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~ 201 (290)
....+..+...-+.+|+.+....+..|+.+++..+.+
T Consensus 82 ~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~~ 118 (281)
T PRK06669 82 ELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEE 118 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555555444443
No 123
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=36.65 E-value=3e+02 Score=24.27 Aligned_cols=6 Identities=17% Similarity=0.661 Sum_probs=2.6
Q ss_pred HHHHHh
Q 022890 246 DTIKDL 251 (290)
Q Consensus 246 e~l~~~ 251 (290)
+++..+
T Consensus 197 ~al~~l 202 (281)
T PRK06669 197 ELLKEV 202 (281)
T ss_pred HHHHHc
Confidence 444444
No 124
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=36.06 E-value=2.2e+02 Score=22.62 Aligned_cols=8 Identities=0% Similarity=0.335 Sum_probs=3.6
Q ss_pred HHHHHhhH
Q 022890 116 LDELFEQK 123 (290)
Q Consensus 116 ~~~i~~~R 123 (290)
+..++..|
T Consensus 27 i~~~l~~R 34 (159)
T PRK09173 27 IARSLDAR 34 (159)
T ss_pred HHHHHHHH
Confidence 44444443
No 125
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=34.27 E-value=2.5e+02 Score=22.61 Aligned_cols=9 Identities=0% Similarity=0.298 Sum_probs=3.8
Q ss_pred CHHHHHhhH
Q 022890 115 TLDELFEQK 123 (290)
Q Consensus 115 ~~~~i~~~R 123 (290)
++..++.+|
T Consensus 30 pi~~~l~~R 38 (161)
T COG0711 30 PILKALDER 38 (161)
T ss_pred HHHHHHHHH
Confidence 333444443
No 126
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=33.89 E-value=4.7e+02 Score=26.42 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=21.1
Q ss_pred HHHHHHH-HhhccCeEEEEEE----eecCCCChHHHHHHHHH
Q 022890 130 VLEELEK-VMGAYGYSIEHIL----MVDIIPDPAVRKAMNEI 166 (290)
Q Consensus 130 v~~~l~~-~l~~~Gi~i~~v~----I~~i~~p~~v~~ai~~~ 166 (290)
+-+.|+. .|...||.|++-. +-....|+++....+++
T Consensus 519 ~~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~~~ 560 (651)
T PTZ00399 519 LCDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEK 560 (651)
T ss_pred HHHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHHHH
Confidence 3455666 5888899998852 11233445555544443
No 127
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=32.97 E-value=74 Score=25.25 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhccCeEEEEEEeecCCCChH
Q 022890 127 AKAVLEELEKVMGAYGYSIEHILMVDIIPDPA 158 (290)
Q Consensus 127 ~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~ 158 (290)
.-++++.|.+.|.++|++|.++.-.++++|+-
T Consensus 11 G~~lK~~l~~~L~~~g~eV~D~G~~~~dypd~ 42 (141)
T PRK12613 11 GNALKELIKSFLQEEGYDIIDVTDINSDFIDN 42 (141)
T ss_pred hHHHHHHHHHHHHHCCCEEEEcCCCCCChHHH
Confidence 34688889999999999999988766677763
No 128
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=29.17 E-value=1.8e+02 Score=25.40 Aligned_cols=7 Identities=0% Similarity=0.282 Sum_probs=3.3
Q ss_pred eEEEEEE
Q 022890 143 YSIEHIL 149 (290)
Q Consensus 143 i~i~~v~ 149 (290)
|.|..+.
T Consensus 20 ~~~~~~~ 26 (255)
T TIGR03825 20 IPLRQVT 26 (255)
T ss_pred eeeeeec
Confidence 4455544
No 129
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=28.16 E-value=3.1e+02 Score=21.88 Aligned_cols=6 Identities=0% Similarity=0.268 Sum_probs=2.3
Q ss_pred HHHHHh
Q 022890 246 DTIKDL 251 (290)
Q Consensus 246 e~l~~~ 251 (290)
+...++
T Consensus 134 ~~a~ki 139 (164)
T PRK14471 134 EIAEKV 139 (164)
T ss_pred HHHHHH
Confidence 333333
No 130
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=27.20 E-value=3.7e+02 Score=22.46 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=11.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhh
Q 022890 202 GVGVARQRQAITDGLRENILNFSHK 226 (290)
Q Consensus 202 A~a~A~a~~~~aea~a~~~~~~~~a 226 (290)
.+++...++++..|..++-...-++
T Consensus 54 ~ea~~~~~~iis~A~le~r~~~Le~ 78 (194)
T COG1390 54 KEAERERQRIISSALLEARRKLLEA 78 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555444444433
No 131
>PHA00448 hypothetical protein
Probab=26.38 E-value=2.2e+02 Score=19.45 Aligned_cols=6 Identities=17% Similarity=0.246 Sum_probs=2.2
Q ss_pred HHHHHH
Q 022890 192 EAEAEA 197 (290)
Q Consensus 192 eaeae~ 197 (290)
+.||++
T Consensus 28 r~~A~~ 33 (70)
T PHA00448 28 RKDATR 33 (70)
T ss_pred HHhHHH
Confidence 333333
No 132
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.67 E-value=3e+02 Score=26.79 Aligned_cols=10 Identities=20% Similarity=0.351 Sum_probs=5.6
Q ss_pred hhccCeEEEE
Q 022890 138 MGAYGYSIEH 147 (290)
Q Consensus 138 l~~~Gi~i~~ 147 (290)
|..+|+.+++
T Consensus 504 l~~~g~~led 513 (586)
T KOG2007|consen 504 LLELGVRLED 513 (586)
T ss_pred HHHhhhHHHh
Confidence 4456666554
No 133
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=24.30 E-value=66 Score=25.62 Aligned_cols=30 Identities=7% Similarity=-0.086 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhccCeEEEEEEe---ecCCCCh
Q 022890 128 KAVLEELEKVMGAYGYSIEHILM---VDIIPDP 157 (290)
Q Consensus 128 ~~v~~~l~~~l~~~Gi~i~~v~I---~~i~~p~ 157 (290)
-.+++.|.+.|.++|.+|.++.- ..+++|+
T Consensus 10 ~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd 42 (144)
T TIGR00689 10 LELKSEIIEHLKQKGHEVIDCGTLYDERVDYPD 42 (144)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHH
Confidence 46888899999999999999875 3344544
No 134
>PRK15322 invasion protein OrgB; Provisional
Probab=24.08 E-value=2.4e+02 Score=23.90 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcc
Q 022890 177 VYKGEAEKILQVKRAEAEAEAKYLGG 202 (290)
Q Consensus 177 ~~~Ae~~~~~~i~~Aeaeae~~~~~A 202 (290)
+.+|+.++...+..|+.|||+.+..|
T Consensus 18 ~~qA~~kA~~ii~qA~~eaE~ir~~A 43 (210)
T PRK15322 18 EQQARRRAKRILRQAEEEAETLRMYA 43 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666655443
No 135
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=23.48 E-value=2.2e+02 Score=22.43 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhccCeEEEEEEeecCC
Q 022890 128 KAVLEELEKVMGAYGYSIEHILMVDII 154 (290)
Q Consensus 128 ~~v~~~l~~~l~~~Gi~i~~v~I~~i~ 154 (290)
.++++.|.+.|.++|.+|.++...+-+
T Consensus 11 ~~lK~~i~~~L~~~g~eV~D~G~~~~~ 37 (140)
T PF02502_consen 11 FELKEAIKEYLEEKGYEVIDFGTYSED 37 (140)
T ss_dssp HHHHHHHHHHHHHTTEEEEEESESSTS
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCCCC
Confidence 467888889999999999999988744
No 136
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=22.81 E-value=1.5e+02 Score=23.58 Aligned_cols=31 Identities=10% Similarity=-0.078 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhccCeEEEEEEe---ecCCCCh
Q 022890 127 AKAVLEELEKVMGAYGYSIEHILM---VDIIPDP 157 (290)
Q Consensus 127 ~~~v~~~l~~~l~~~Gi~i~~v~I---~~i~~p~ 157 (290)
.-++++.|.+.|+++|.+|.++.- .++++|+
T Consensus 10 G~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd 43 (143)
T TIGR01120 10 GFILKEEIKAFLVERGVKVIDKGTWSSERTDYPH 43 (143)
T ss_pred hHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHH
Confidence 357888899999999999999875 3355554
No 137
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=22.54 E-value=29 Score=26.63 Aligned_cols=20 Identities=30% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHh
Q 022890 181 EAEKILQVKRAEAEAEAKYL 200 (290)
Q Consensus 181 e~~~~~~i~~Aeaeae~~~~ 200 (290)
+.++...+..|+.+|+..+.
T Consensus 84 ~~eA~~i~~~A~~~a~~i~~ 103 (131)
T PF05103_consen 84 EEEAEEIIEEAQKEAEEIIE 103 (131)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444433333
No 138
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=22.29 E-value=1.2e+02 Score=23.91 Aligned_cols=46 Identities=15% Similarity=0.289 Sum_probs=29.3
Q ss_pred EEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHHHHHHH
Q 022890 72 LLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVL 131 (290)
Q Consensus 72 v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i~~~v~ 131 (290)
.++.+.||+.||. -. +.+.+..| +.++++.++.++..|.+++.+..
T Consensus 93 tTG~v~WR~rpPS--v~---vrgveaV~---------e~L~rmgf~rFiRTk~EinKeAi 138 (170)
T COG4396 93 TTGLVKWRIRPPS--VK---VRGVEAVL---------EWLSRMGFARFIRTKKEINKEAI 138 (170)
T ss_pred eeeeEEEeecCCc--ce---eccHHHHH---------HHHHHhhHHHHHHhHHHhcHHHH
Confidence 3677999999743 22 23333322 34557788888888888876543
No 139
>COG0806 RimM RimM protein, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=22.04 E-value=99 Score=25.45 Aligned_cols=27 Identities=7% Similarity=0.052 Sum_probs=19.4
Q ss_pred CcceeeccccceeEEEeeeeeEEEeeeC
Q 022890 32 PGLHFFNPCAGQWLAGILSTRINSLDVR 59 (290)
Q Consensus 32 pG~~~~~P~~~~~v~~~~~~r~~~~~~~ 59 (290)
.+..+++||+ +.++..+|+....+.+.
T Consensus 141 ~~k~~LIPf~-~~~V~~Vd~~~k~I~v~ 167 (174)
T COG0806 141 GKKERLIPFV-DAVVKEVDLEAKKIEVD 167 (174)
T ss_pred CCcEEEecch-HheeeEEecCCCEEEEe
Confidence 3357889999 77766788777766654
No 140
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=21.76 E-value=1.5e+02 Score=21.61 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=11.5
Q ss_pred cCCcEEEEEEEEEEEEe
Q 022890 65 KDNVFVQLLCSIQYRIV 81 (290)
Q Consensus 65 ~D~~~v~v~~~v~yrI~ 81 (290)
.+++.+++++.+.|-.+
T Consensus 57 ~~~i~v~l~v~v~~g~~ 73 (108)
T PF03780_consen 57 DGGITVDLHVVVEYGVN 73 (108)
T ss_pred CcceEEEEEEEEECCcc
Confidence 56677777777777654
No 141
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=21.38 E-value=76 Score=21.58 Aligned_cols=29 Identities=7% Similarity=0.040 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEecCCC
Q 022890 238 LIMITQYFDTIKDLGNSSNNTTVFLPHGP 266 (290)
Q Consensus 238 ~~l~~~~le~l~~~~~~~~~~~v~lp~~~ 266 (290)
..|...||+.++.-+.+.=.++-|+..+.
T Consensus 28 ~~LR~eYl~~fR~~~~~~L~~i~ivD~~G 56 (65)
T PF05979_consen 28 AELRQEYLQNFRGNFRSQLENIKIVDPDG 56 (65)
T ss_dssp HHHHHHHHHTTHHHHHHCSSTT-------
T ss_pred HHHHHHHHHHHHHHHHHHhcceeEECCCC
Confidence 34567899999888876555666665554
No 142
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=20.42 E-value=4.6e+02 Score=21.12 Aligned_cols=70 Identities=7% Similarity=-0.094 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhh
Q 022890 157 PAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHK 226 (290)
Q Consensus 157 ~~v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~~aea~a~~~~~~~~a 226 (290)
+.+...++++...-......-.++..++.......+.+-...+.+|+..+...+....+++.+-..-.++
T Consensus 33 ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea 102 (155)
T PRK06569 33 PKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQ 102 (155)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!