Query 022890
Match_columns 290
No_of_seqs 222 out of 1725
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 12:50:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 100.0 4.4E-30 1.5E-34 214.4 18.2 179 40-258 2-181 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.9 5.3E-27 1.8E-31 184.8 12.4 130 36-169 3-133 (133)
3 1win_A Flotillin 2; BAND 7 dom 99.9 5E-23 1.7E-27 164.0 4.7 128 40-170 3-139 (143)
4 2rpb_A Hypothetical membrane p 99.8 3.3E-21 1.1E-25 147.4 9.5 109 48-158 4-113 (113)
5 2zuo_A MVP, major vault protei 99.0 1.1E-07 3.8E-12 92.2 25.0 151 11-164 461-655 (861)
6 3v6i_A V-type ATP synthase sub 83.2 12 0.0004 29.8 10.3 19 179-197 21-39 (187)
7 2xzm_4 40S ribosomal protein S 83.0 2.5 8.6E-05 35.8 6.3 87 61-152 129-220 (265)
8 3v6i_B V-type ATP synthase, su 80.6 13 0.00045 26.4 9.7 25 178-202 23-47 (105)
9 2k6i_A Uncharacterized protein 79.8 1.5 5.2E-05 27.8 2.9 18 180-197 24-41 (56)
10 3u5c_B RP10A, 40S ribosomal pr 79.0 2.6 9E-05 35.6 5.0 90 60-154 125-216 (255)
11 3v6i_B V-type ATP synthase, su 78.4 16 0.00054 26.1 10.5 32 166-197 22-53 (105)
12 3bk6_A PH stomatin; archaea, t 76.8 3.1 0.0001 33.3 4.8 24 203-226 129-152 (188)
13 4efa_G V-type proton ATPase su 70.5 29 0.001 25.5 8.5 40 161-200 10-49 (119)
14 2kk7_A V-type ATP synthase sub 70.5 7.4 0.00025 24.2 4.4 22 184-205 23-44 (52)
15 2zuo_A MVP, major vault protei 65.4 63 0.0022 31.9 11.6 11 12-22 489-499 (861)
16 3j20_A 30S ribosomal protein S 62.3 51 0.0017 26.6 8.9 79 61-153 108-188 (198)
17 2k6i_A Uncharacterized protein 61.4 15 0.00053 23.2 4.4 30 167-196 22-51 (56)
18 3v6i_A V-type ATP synthase sub 57.1 69 0.0024 25.2 11.7 10 242-251 105-114 (187)
19 4efa_G V-type proton ATPase su 46.8 64 0.0022 23.7 6.6 37 175-211 13-49 (119)
20 2b5u_A Colicin E3; high resolu 44.6 1.3E+02 0.0046 27.7 9.5 34 141-174 278-311 (551)
21 2acm_B Mucin-1; auto-catalytic 40.9 39 0.0013 21.2 3.8 23 136-158 30-52 (55)
22 4efa_E V-type proton ATPase su 28.1 2.4E+02 0.0082 22.8 9.1 10 156-165 10-19 (233)
23 1l2p_A ATP synthase B chain; a 21.5 1.5E+02 0.0052 18.3 6.1 11 207-217 36-46 (61)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.97 E-value=4.4e-30 Score=214.37 Aligned_cols=179 Identities=21% Similarity=0.264 Sum_probs=142.0
Q ss_pred ccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHH
Q 022890 40 CAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDE 118 (290)
Q Consensus 40 ~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~ 118 (290)
|+ +++. ++|+|.++++++. .++|+|+++|.++++++|||.| |.++++.+.|+...+.+.+++++|+++|++++++
T Consensus 2 fi-~~v~-~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~d--p~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~e 77 (188)
T 3bk6_A 2 IF-EKAV-IVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVD--PVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDE 77 (188)
T ss_dssp CE-EECC-CCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred ce-EEEE-EEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECC--HHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHH
Confidence 56 7885 9999999999988 9999999999999999999995 7888999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022890 119 LFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAK 198 (290)
Q Consensus 119 i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~ 198 (290)
++++|++|+..+++.|++.+++|||+|.+|.|++|+||+++.++|++++.|++++++.+.+|||++++ .
T Consensus 78 ll~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~a-----------~ 146 (188)
T 3bk6_A 78 LLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQA-----------A 146 (188)
T ss_dssp HHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
T ss_pred HHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----------H
Confidence 99999999999999999999999999999999999999999999999988888777666555555433 2
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 022890 199 YLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGNSSNNT 258 (290)
Q Consensus 199 ~~~A~a~A~a~~~~aea~a~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~~~~~ 258 (290)
++. +++ .+.++. +|.+ +.+||||++.++++++|+|
T Consensus 147 ~~~-----------a~a----~~~~~~------~~~~----l~lr~le~~~~ia~~~~~~ 181 (188)
T 3bk6_A 147 EKL-----------REA----AEIISE------HPMA----LQLRTLQTISDVAGDKSNL 181 (188)
T ss_dssp HHH-----------HHH----HHHHHH------CTTH----HHHHHTTC-----------
T ss_pred HHH-----------HHH----HHHHHh------CHHH----HHHHHHHHHHHHhcCCCCc
Confidence 222 111 111211 4543 4569999999999876554
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.94 E-value=5.3e-27 Score=184.77 Aligned_cols=130 Identities=20% Similarity=0.286 Sum_probs=106.1
Q ss_pred eeccccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCC
Q 022890 36 FFNPCAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRM 114 (290)
Q Consensus 36 ~~~P~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~ 114 (290)
+.+||+ +++. ++|+|.++++++. +++|+|+..+.++++++|||.| |.++++++.|++..+...+++++|+++|++
T Consensus 3 l~~P~i-d~v~-~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~D--p~~~~~~v~~~~~~l~~~~~~~lR~vig~~ 78 (133)
T 4fvg_A 3 LGSPST-DSAA-KVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQN--ATLAVANITNADSATRLLAQTTLRNALGTK 78 (133)
T ss_dssp -------------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCce-eEEE-EEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEee--hHHhHhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 678999 9997 9999999999988 8999999999999999999994 899999999999999999999999999999
Q ss_pred CHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHHHHH
Q 022890 115 TLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAA 169 (290)
Q Consensus 115 ~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~~~A 169 (290)
++++++++|++|...+++.+++.+++|||+|.+|.|++++||+++.++|.++++|
T Consensus 79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A 133 (133)
T 4fvg_A 79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA 133 (133)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999877665
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.87 E-value=5e-23 Score=164.00 Aligned_cols=128 Identities=15% Similarity=0.205 Sum_probs=113.1
Q ss_pred ccceeEEEeeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhhhhcC--------ChHHHHHHHHHHHHHHh
Q 022890 40 CAGQWLAGILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQ--------NPKEQIQAYVFDVVRAL 110 (290)
Q Consensus 40 ~~~~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~--------~~~~~l~~~~~~~lr~~ 110 (290)
|+ +++. ++|+|.+++++++ +++|+|++++.|+++++|||.+ +|.++.+.+. ..+..+.+.++++||++
T Consensus 3 ~i-~~v~-~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~d-d~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~v 79 (143)
T 1win_A 3 SG-SSGQ-RISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMT-EKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSI 79 (143)
T ss_dssp CC-CCCC-SCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECC-CSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cc-eEEE-EEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECC-CHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 56 7886 9999999999998 8999999999999999999984 2444433322 23567889999999999
Q ss_pred ccCCCHHHHHhhHHHHHHHHHHHHHHHhhccCeEEEEEEeecCCCChHHHHHHHHHHHHH
Q 022890 111 VPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQ 170 (290)
Q Consensus 111 i~~~~~~~i~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~v~~ai~~~~~Ae 170 (290)
+|++++++++++|+.|.+.+++.+++.+++|||+|.+|.|++|++|+++.+||.+++.||
T Consensus 80 iG~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae 139 (143)
T 1win_A 80 LGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSG 139 (143)
T ss_dssp HHHSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCC
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999998776665
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.85 E-value=3.3e-21 Score=147.39 Aligned_cols=109 Identities=25% Similarity=0.358 Sum_probs=105.1
Q ss_pred eeeeeEEEeeeCC-ceeecCCcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHH
Q 022890 48 ILSTRINSLDVRI-ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEV 126 (290)
Q Consensus 48 ~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i 126 (290)
++|+|.++++++. .++|+|+++|.++++++|||.| |.++++++.+++..|.+.+++++|+++|++++++++++|++|
T Consensus 4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~d--p~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~~i 81 (113)
T 2rpb_A 4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVID--PVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDII 81 (113)
T ss_dssp CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESC--TTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCHHHH
T ss_pred EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECC--HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHHHH
Confidence 6899999999998 9999999999999999999985 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCeEEEEEEeecCCCChH
Q 022890 127 AKAVLEELEKVMGAYGYSIEHILMVDIIPDPA 158 (290)
Q Consensus 127 ~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~ 158 (290)
++.+++.+++.+++|||+|.+|.|++|+||++
T Consensus 82 ~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 82 NARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 99999999999999999999999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=99.03 E-value=1.1e-07 Score=92.15 Aligned_cols=151 Identities=17% Similarity=0.220 Sum_probs=102.5
Q ss_pred eecCCcEEEEEEc--CcccceeCCcceeeccccceeEEEeeeee-----------EEEeeeCC-------ceeecCCcEE
Q 022890 11 CIDQASVGIVERW--GRFEKLAEPGLHFFNPCAGQWLAGILSTR-----------INSLDVRI-------ETKTKDNVFV 70 (290)
Q Consensus 11 ~V~~g~~~Vv~~~--Gk~~~~l~pG~~~~~P~~~~~v~~~~~~r-----------~~~~~~~~-------~v~T~D~~~v 70 (290)
.||.+...-++-+ |+..-++||-+.++-|- +.+. .+++. ...+.+.+ .+-|+|...+
T Consensus 461 rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd--E~ft-vlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL 537 (861)
T 2zuo_A 461 RVPHNAAVQVYDYRAKRARVVFGPELVTLDPE--EQFT-VLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARL 537 (861)
T ss_dssp ECCTTEEEEEECSSSCCEEEECSSCEEECCSS--CEEC-CEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEE
T ss_pred EcCCCeEEEEEecCCCceEEEECCcEEEECCC--ccEE-EEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEE
Confidence 5666666666654 44444678888776664 2221 23221 12222332 6899999999
Q ss_pred EEEEEEEEEEec---Cchh--hhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhhHHHH-HHHHHHH-----------
Q 022890 71 QLLCSIQYRIVR---ANAD--DAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEV-AKAVLEE----------- 133 (290)
Q Consensus 71 ~v~~~v~yrI~~---~~~~--~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~R~~i-~~~v~~~----------- 133 (290)
.+..++.|+..- .++. ...|.+.|+-.-+=..+.+.+|..++..+++++..+-..| ...++..
T Consensus 538 ~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~~ 617 (861)
T 2zuo_A 538 QLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGT 617 (861)
T ss_dssp EEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC----------
T ss_pred EEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccccc
Confidence 999999999852 2233 6778999999888899999999999999999999985444 2222211
Q ss_pred ----HH--HHhhccCeEEEEEEeecCCC-ChHHHHHHH
Q 022890 134 ----LE--KVMGAYGYSIEHILMVDIIP-DPAVRKAMN 164 (290)
Q Consensus 134 ----l~--~~l~~~Gi~i~~v~I~~i~~-p~~v~~ai~ 164 (290)
.+ -.+...|+.|.+|.|+++.| ++...++++
T Consensus 618 ~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~Lq 655 (861)
T 2zuo_A 618 LLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQ 655 (861)
T ss_dssp ---CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHHH
T ss_pred cccCcccceEEccCCeEEEEEeeeeecccCHHHHHHHH
Confidence 00 12566799999999999997 444555554
No 6
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=83.15 E-value=12 Score=29.79 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 022890 179 KGEAEKILQVKRAEAEAEA 197 (290)
Q Consensus 179 ~Ae~~~~~~i~~Aeaeae~ 197 (290)
+|+.++...+..|+.+|++
T Consensus 21 eA~~~a~~I~~eA~~eA~~ 39 (187)
T 3v6i_A 21 EAEAKAEAVKREAEEKAKA 39 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 7
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=83.05 E-value=2.5 Score=35.79 Aligned_cols=87 Identities=10% Similarity=0.245 Sum_probs=58.4
Q ss_pred ceeecCCcEEEEEEEEEEEEec---CchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHHHH
Q 022890 61 ETKTKDNVFVQLLCSIQYRIVR---ANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEELE 135 (290)
Q Consensus 61 ~v~T~D~~~v~v~~~v~yrI~~---~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~ 135 (290)
++.|.||..+.+-+...-.-.. ....+..|.-..-...|+......+...++..++.+++.. -+.|..+|....+
T Consensus 129 dVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~keI~k~~k 208 (265)
T 2xzm_4 129 DCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETK 208 (265)
T ss_dssp EEEETTTEEEEEEEEEEECCCSSCCSCSSCCBCCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred EEEeCCCcEEEEEEEEEEecccccccccceeeeccccchHHHHHHHHHHHHHHhhhCCHHHHHHHHccchHHHHHHHHhh
Confidence 7899999999987765544332 1222333333344578999999999999999999999987 4555555555444
Q ss_pred HHhhccCeEEEEEEeec
Q 022890 136 KVMGAYGYSIEHILMVD 152 (290)
Q Consensus 136 ~~l~~~Gi~i~~v~I~~ 152 (290)
.. +.+.+|.|+.
T Consensus 209 ~I-----yPL~~V~IrK 220 (265)
T 2xzm_4 209 NI-----FPLQNITIRK 220 (265)
T ss_dssp TT-----CCEEEEEEEE
T ss_pred hc-----cccceEEEEE
Confidence 32 3455566655
No 8
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=80.56 E-value=13 Score=26.45 Aligned_cols=25 Identities=40% Similarity=0.288 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhcc
Q 022890 178 YKGEAEKILQVKRAEAEAEAKYLGG 202 (290)
Q Consensus 178 ~~Ae~~~~~~i~~Aeaeae~~~~~A 202 (290)
..|..++...+..|+++|.+...+|
T Consensus 23 E~Ar~eA~~~v~~AEAeA~ril~eA 47 (105)
T 3v6i_B 23 EAAKKEAEERVKRAEAEAKALLEEA 47 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433333
No 9
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=79.82 E-value=1.5 Score=27.81 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 022890 180 GEAEKILQVKRAEAEAEA 197 (290)
Q Consensus 180 Ae~~~~~~i~~Aeaeae~ 197 (290)
||.++...+..|+.+++.
T Consensus 24 AE~~A~~iVeeA~~ea~~ 41 (56)
T 2k6i_A 24 AEEQAVKEIEEAKNRAEQ 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 10
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B
Probab=78.98 E-value=2.6 Score=35.57 Aligned_cols=90 Identities=13% Similarity=0.226 Sum_probs=61.9
Q ss_pred CceeecCCcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHHHHHH
Q 022890 60 IETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEELEKV 137 (290)
Q Consensus 60 ~~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~ 137 (290)
.++.|.||..+.+-+...-.-.+....+..|.-..-...|+......+...++..++.+++.. -+.|..+|....+..
T Consensus 125 vdVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQi~~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~~eI~k~~k~I 204 (255)
T 3u5c_B 125 VTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDI 204 (255)
T ss_dssp EEEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHTTTHHHHHHHHHHHTT
T ss_pred EEEEecCCCEEEEEEEEEEcccccccccceechHhHHHHHHHHHHHHHHHHhhhCCHHHHHHHHcCchHHHHHHHHhccc
Confidence 378999999998877755333221222233333344578999999999999999999999987 477777777665553
Q ss_pred hhccCeEEEEEEeecCC
Q 022890 138 MGAYGYSIEHILMVDII 154 (290)
Q Consensus 138 l~~~Gi~i~~v~I~~i~ 154 (290)
..+.+|.|+.+.
T Consensus 205 -----yPL~~V~IrKvK 216 (255)
T 3u5c_B 205 -----FPLQNIHVRKVK 216 (255)
T ss_dssp -----CCCEEEECCCEE
T ss_pred -----cccceEEEEEEE
Confidence 345566666544
No 11
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=78.39 E-value=16 Score=26.06 Aligned_cols=32 Identities=34% Similarity=0.361 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 022890 166 INAAQRLQLASVYKGEAEKILQVKRAEAEAEA 197 (290)
Q Consensus 166 ~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~ 197 (290)
...|+++.+..+.+||+++.+.+..|+..+.+
T Consensus 22 lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~ 53 (105)
T 3v6i_B 22 LEAAKKEAEERVKRAEAEAKALLEEAEAKAKA 53 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778888888887776666655544
No 12
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=76.79 E-value=3.1 Score=33.29 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh
Q 022890 203 VGVARQRQAITDGLRENILNFSHK 226 (290)
Q Consensus 203 ~a~A~a~~~~aea~a~~~~~~~~a 226 (290)
+.++++..+.|+|++++.+.++++
T Consensus 129 ere~~A~i~~Aege~~a~~~~a~a 152 (188)
T 3bk6_A 129 ERERRARITLAEAERQAAEKLREA 152 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334455666777777777766655
No 13
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=70.51 E-value=29 Score=25.55 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 022890 161 KAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYL 200 (290)
Q Consensus 161 ~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae~~~~ 200 (290)
+-|..-..||+++...+.+|..++...+..|+.+|++.+.
T Consensus 10 ~GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe 49 (119)
T 4efa_G 10 NGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEID 49 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778888888888888888888888888887777544
No 14
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=70.48 E-value=7.4 Score=24.23 Aligned_cols=22 Identities=18% Similarity=-0.032 Sum_probs=9.0
Q ss_pred HHHHHHHhHHHHHHHHhcchhh
Q 022890 184 KILQVKRAEAEAEAKYLGGVGV 205 (290)
Q Consensus 184 ~~~~i~~Aeaeae~~~~~A~a~ 205 (290)
+...+..|+.+|+..+.+|+.+
T Consensus 23 A~~Il~eA~~eA~~Ii~eA~~~ 44 (52)
T 2kk7_A 23 ANKIISEAEAEKAKILEKAKEE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333
No 15
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=65.35 E-value=63 Score=31.90 Aligned_cols=11 Identities=18% Similarity=0.021 Sum_probs=5.1
Q ss_pred ecCCcEEEEEE
Q 022890 12 IDQASVGIVER 22 (290)
Q Consensus 12 V~~g~~~Vv~~ 22 (290)
.+|.+.-.+..
T Consensus 489 L~PdE~ftvls 499 (861)
T 2zuo_A 489 LDPEEQFTVLS 499 (861)
T ss_dssp CCSSCEECCEE
T ss_pred ECCCccEEEEE
Confidence 44555444443
No 16
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=62.26 E-value=51 Score=26.58 Aligned_cols=79 Identities=11% Similarity=0.222 Sum_probs=56.9
Q ss_pred ceeecCCcEEEEEEEEEEEEecCchhhhhhhcCChHHHHHHHHHHHHHHhccCCCHHHHHhh--HHHHHHHHHHHHHHHh
Q 022890 61 ETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQ--KGEVAKAVLEELEKVM 138 (290)
Q Consensus 61 ~v~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~~i~~~--R~~i~~~v~~~l~~~l 138 (290)
++.|+||..+.+-+...-. . + .-..-...|+......+...++..++.++... -+.|..++....+...
T Consensus 108 dVkT~DGy~lRvf~i~fT~-k-----r---a~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~k~Iy 178 (198)
T 3j20_A 108 NITTKDGYKLRVMAMAIAM-R-----R---IQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIY 178 (198)
T ss_dssp EEECTTSCEEEEEEEEEEC-S-----S---CCCTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHHHHHS
T ss_pred EEEecCCCEEEEEEEEEEe-c-----c---ccchhhhHHHHHHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhhCccc
Confidence 7899999999887764422 1 0 12234578999999999999999999999988 4778888877776653
Q ss_pred hccCeEEEEEEeecC
Q 022890 139 GAYGYSIEHILMVDI 153 (290)
Q Consensus 139 ~~~Gi~i~~v~I~~i 153 (290)
.+.+|.|+.+
T Consensus 179 -----Pl~~V~IrKv 188 (198)
T 3j20_A 179 -----PLRKAEIRKI 188 (198)
T ss_dssp -----CEEEEEEEEE
T ss_pred -----ccceEEEEEE
Confidence 3445555543
No 17
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=61.40 E-value=15 Score=23.16 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 022890 167 NAAQRLQLASVYKGEAEKILQVKRAEAEAE 196 (290)
Q Consensus 167 ~~Ae~~~~a~~~~Ae~~~~~~i~~Aeaeae 196 (290)
-.||+++...+.+|+.++...+..|+.+|+
T Consensus 22 KeAE~~A~~iVeeA~~ea~~ii~eAreeAk 51 (56)
T 2k6i_A 22 KLAEEQAVKEIEEAKNRAEQIKAEAIEEAK 51 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544444443
No 18
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=57.12 E-value=69 Score=25.16 Aligned_cols=10 Identities=10% Similarity=0.311 Sum_probs=4.3
Q ss_pred HHHHHHHHHh
Q 022890 242 TQYFDTIKDL 251 (290)
Q Consensus 242 ~~~le~l~~~ 251 (290)
..-.+++..+
T Consensus 105 ~Li~ea~~~l 114 (187)
T 3v6i_A 105 KLALEALEAL 114 (187)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHc
Confidence 3334444444
No 19
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=46.77 E-value=64 Score=23.69 Aligned_cols=37 Identities=19% Similarity=0.095 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhcchhhHHHHHH
Q 022890 175 ASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQA 211 (290)
Q Consensus 175 a~~~~Ae~~~~~~i~~Aeaeae~~~~~A~a~A~a~~~ 211 (290)
....+||.++...+..|+......+..|+.+|.+...
T Consensus 13 QqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe 49 (119)
T 4efa_G 13 ATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEID 49 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666655555433
No 20
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=44.56 E-value=1.3e+02 Score=27.69 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=27.6
Q ss_pred cCeEEEEEEeecCCCChHHHHHHHHHHHHHHHHH
Q 022890 141 YGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQL 174 (290)
Q Consensus 141 ~Gi~i~~v~I~~i~~p~~v~~ai~~~~~Ae~~~~ 174 (290)
-|++-..|.+.+|-.|.++.+-.++...++|+-.
T Consensus 278 Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew~ 311 (551)
T 2b5u_A 278 SGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEWD 311 (551)
T ss_dssp GCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEeecCCHHHHHHHHHHHHHHHHHhh
Confidence 4889899999999999999888877766666653
No 21
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=40.89 E-value=39 Score=21.15 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=15.4
Q ss_pred HHhhccCeEEEEEEeecCCCChH
Q 022890 136 KVMGAYGYSIEHILMVDIIPDPA 158 (290)
Q Consensus 136 ~~l~~~Gi~i~~v~I~~i~~p~~ 158 (290)
+....|.+.|..|.++|+.+|-.
T Consensus 30 ~a~~~YnL~IS~vsV~dv~FPsS 52 (55)
T 2acm_B 30 EAASRYNLTISDVSVSDVPFPFS 52 (55)
T ss_dssp HHHHHHCCCEEEEEEECC-----
T ss_pred hccccccceecceeEEeccCCCc
Confidence 34558999999999999999854
No 22
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=28.11 E-value=2.4e+02 Score=22.81 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=5.4
Q ss_pred ChHHHHHHHH
Q 022890 156 DPAVRKAMNE 165 (290)
Q Consensus 156 p~~v~~ai~~ 165 (290)
|.++.+.+++
T Consensus 10 ~~~v~~~i~~ 19 (233)
T 4efa_E 10 PNQVNDELNK 19 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4556555553
No 23
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=21.54 E-value=1.5e+02 Score=18.29 Aligned_cols=11 Identities=0% Similarity=0.163 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 022890 207 RQRQAITDGLR 217 (290)
Q Consensus 207 ~a~~~~aea~a 217 (290)
++.+++..+..
T Consensus 36 ea~~i~~~A~~ 46 (61)
T 1l2p_A 36 ERTKIVAQAQA 46 (61)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444443
Done!