BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022891
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G40|A Chain A, Crystal Structure Of A Duf162 Family Protein (Dr_1909)
From Deinococcus Radiodurans At 1.70 A Resolution
Length = 224
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 85 ALSGWKQESLPPVEVPAAAQWKFRSKPFEQLILDYDYTFT 124
A++G + E+LPP VPA FE ILDY +T
Sbjct: 33 AIAGSRPEALPPYPVPAPLSRAEILHQFEDRILDYGAAYT 72
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 3 VEVDEKDLKVAGAEPLTGERRGLRIRGWEIESR------KRSILNS-SSVERWEQKLETN 55
V++ E+ ++VA EPL+ + +++ GW IE+R R L S + R+ ET
Sbjct: 306 VDLVEQMIRVAAGEPLSITQGDVKLTGWAIENRLYAEDPYRGFLPSIGRLTRYRPPAETA 365
Query: 56 HLPEMVFGE 64
P +V G+
Sbjct: 366 AGPLLVNGK 374
>pdb|4DGU|A Chain A, Crystal Structure Of A Putative Cell Adhesion Protein
(Bt0320) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.37 A Resolution
pdb|4DGU|B Chain B, Crystal Structure Of A Putative Cell Adhesion Protein
(Bt0320) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.37 A Resolution
Length = 247
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 86 LSGWKQESLPPVEVPAAAQ---WKFRSKPFEQLILDYDYTFTTPYCGSETIEMDTDKHGT 142
L G ++ E +Q KF+ +ILD + PY G +E+ GT
Sbjct: 101 LKGGQEHLFGTAEAAPGSQNVSLKFKRXTVPVIILDEN---DRPYEGEAKVELSLKNEGT 157
Query: 143 RDNLDGSSSLHWEDCKEKIDV 163
+D L+G+ ++ E I+V
Sbjct: 158 QDLLNGTIEINENALSENIEV 178
>pdb|1AR4|A Chain A, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR4|B Chain B, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR5|A Chain A, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AR5|B Chain B, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AVM|A Chain A, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1AVM|B Chain B, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1BS3|A Chain A, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BS3|B Chain B, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BSM|A Chain A, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BSM|B Chain B, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BT8|A Chain A, P.Shermanii Sod(Fe+3) Ph 10.0
pdb|1BT8|B Chain B, P.Shermanii Sod(Fe+3) Ph 10.0
Length = 201
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 117 LDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSL--HWEDCKEKIDVVALASKEPILF 174
L YDY+ PY E +E+ DKH + +DG+++ + ++K D A+ E L
Sbjct: 8 LPYDYSALEPYISGEIMELHHDKH-HKAYVDGANTALDKLAEARDKADFGAINKLEKDLA 66
Query: 175 YD 176
++
Sbjct: 67 FN 68
>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|1YVI|B Chain B, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|2Q4F|A Chain A, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
pdb|2Q4F|B Chain B, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
Length = 149
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 131 ETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADNGV 190
+ ++M D+ GT + +L +D I+ +A ++P++ +D+V Y +L +
Sbjct: 28 QQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLKGSSA 87
Query: 191 SLLTVKVRVMPSSWFLLLRFWLRVDGVLMRLRDTR 225
S+ KV+ + + R DG LM L R
Sbjct: 88 SVGAQKVKFTCMQFRQFCQDKSR-DGCLMALAVVR 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,894,527
Number of Sequences: 62578
Number of extensions: 360269
Number of successful extensions: 668
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 665
Number of HSP's gapped (non-prelim): 8
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)