Query 022891
Match_columns 290
No_of_seqs 110 out of 219
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 12:51:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f86_B Hypothetical protein K1 58.7 66 0.0023 25.8 9.2 55 188-244 71-131 (143)
2 3ke7_A Putative ketosteroid is 57.3 45 0.0015 26.8 8.0 55 189-244 74-128 (134)
3 3f7s_A Uncharacterized NTF2-li 41.8 93 0.0032 23.6 7.3 52 191-244 72-126 (142)
4 2jni_A Arenicin-2; peptide, an 34.1 31 0.0011 20.5 2.4 15 210-224 6-20 (26)
5 3plv_C 66 kDa U4/U6.U5 small n 28.8 47 0.0016 19.2 2.6 19 40-58 2-20 (21)
6 1usm_A DCOH, hepatocyte nuclea 15.0 1.4E+02 0.0048 21.8 3.5 25 45-71 31-55 (80)
7 3soa_A Calcium/calmodulin-depe 15.0 3.4E+02 0.012 25.2 7.0 42 191-232 383-430 (444)
8 3fsd_A NTF2-like protein of un 14.9 3.8E+02 0.013 20.1 7.3 40 192-231 74-118 (134)
9 1jsg_A Oncogene product P14TCL 12.5 1.8E+02 0.0061 23.4 3.5 29 171-202 16-44 (114)
10 3suk_A Cerato-platanin-like pr 10.7 1.1E+02 0.0037 25.0 1.7 24 65-88 79-102 (125)
No 1
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=58.68 E-value=66 Score=25.78 Aligned_cols=55 Identities=11% Similarity=0.124 Sum_probs=37.8
Q ss_pred CceEEEEEEEEEeC-Cchhee-eeeeEEe--ec--eEEEEeeeeEEeEecCCCCCeEEeeeee
Q 022891 188 NGVSLLTVKVRVMP-SSWFLL-LRFWLRV--DG--VLMRLRDTRMHCVFSDSGNPVILRENCW 244 (290)
Q Consensus 188 nG~s~lsVKiRVMp-~~ffvL-~RffLRV--D~--VlvRi~DTRiyhef~~~~~~~viRE~~~ 244 (290)
-.+..++.+|++.. +.-++. .|..... || +-.+.+.||+|...+ |.+.|+=+...
T Consensus 71 ~~~~~~~~~V~~~g~d~Av~~y~~~~~~~~~~G~~~~~~~r~T~V~~k~~--g~WkivH~H~S 131 (143)
T 2f86_B 71 VHTTMLNPNVHIIGEDAACVAYVKLTQFLDRNGEAHTRQSQESRVWSKKQ--GRWVCVHVHRS 131 (143)
T ss_dssp CEEEEEEEEEEEETTTEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEET--TEEEEEEEEEE
T ss_pred ceeEEEcceEEEeCCCEEEEEEEeeeeeccCCCCeeeEEEEEEEEEEEeC--CcEEEEEEeEC
Confidence 34588999999998 654443 4444444 45 445799999999986 35777766543
No 2
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}
Probab=57.34 E-value=45 Score=26.78 Aligned_cols=55 Identities=9% Similarity=0.012 Sum_probs=37.6
Q ss_pred ceEEEEEEEEEeCCchheeeeeeEEeeceEEEEeeeeEEeEecCCCCCeEEeeeee
Q 022891 189 GVSLLTVKVRVMPSSWFLLLRFWLRVDGVLMRLRDTRMHCVFSDSGNPVILRENCW 244 (290)
Q Consensus 189 G~s~lsVKiRVMp~~ffvL~RffLRVD~VlvRi~DTRiyhef~~~~~~~viRE~~~ 244 (290)
...+++.+|.|..+..++-...-..+|+--.+++.||+|+... +|...|+.+...
T Consensus 74 ~~ei~~p~V~v~gD~A~~~y~l~~~~~~~~~~~r~T~V~~r~~-dG~W~ivH~H~S 128 (134)
T 3ke7_A 74 HFDMIRPVVQVAQNIAVLTFNLDSYLSDKVIKWNCTEVYRRNP-DNQWKIIQTHWS 128 (134)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECT-TSBEEEEEEEEE
T ss_pred eEEEeCCeEEEeCceEEEEEEEEEeeCCCcEEEEEEEEEEEcC-CCcEEEEEEeec
Confidence 4567788888877765442222244566678999999999983 247888877653
No 3
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=41.78 E-value=93 Score=23.61 Aligned_cols=52 Identities=12% Similarity=-0.091 Sum_probs=35.8
Q ss_pred EEEEEEEEEeCCchheeeeeeEEe---eceEEEEeeeeEEeEecCCCCCeEEeeeee
Q 022891 191 SLLTVKVRVMPSSWFLLLRFWLRV---DGVLMRLRDTRMHCVFSDSGNPVILRENCW 244 (290)
Q Consensus 191 s~lsVKiRVMp~~ffvL~RffLRV---D~VlvRi~DTRiyhef~~~~~~~viRE~~~ 244 (290)
...+++|++-++.-++-.+..++. |+...+.+.|.+|+.-+ |...|+.+...
T Consensus 72 ~~~~~~v~~~gd~A~~~~~~~~~~~~~~g~~~~~r~T~v~~r~~--g~W~ivh~H~S 126 (142)
T 3f7s_A 72 ELAQLTVHAAGDLALAHWLNRCGPGDDESQCGFMRATVGYRRQG--GQWQVIHEHWS 126 (142)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEESSCGGGCEEEEEEEEEEEET--TEEEEEEEEEE
T ss_pred EEeeeEEEEcCCEEEEEEEEEEeeecCCCcceeeEEEEEEEEeC--CEEEEEEEeec
Confidence 445566777777666655544443 66788899999999864 46777776654
No 4
>2jni_A Arenicin-2; peptide, antimicrobial, beta-sheet, antimicrobial protein; NMR {Arenicola marina} PDB: 2l8x_A 2jsb_A
Probab=34.10 E-value=31 Score=20.54 Aligned_cols=15 Identities=40% Similarity=0.784 Sum_probs=12.2
Q ss_pred eeEEeeceEEEEeee
Q 022891 210 FWLRVDGVLMRLRDT 224 (290)
Q Consensus 210 ffLRVD~VlvRi~DT 224 (290)
-|+|+-|||+|-+-+
T Consensus 6 ayvrirgvlvryrrc 20 (26)
T 2jni_A 6 AYVRIRGVLVRYRRC 20 (26)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EEEEEEEEEEEEEEe
Confidence 478999999998743
No 5
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=28.82 E-value=47 Score=19.16 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=15.4
Q ss_pred cCchHHHHHHHHcCCCCCC
Q 022891 40 LNSSSVERWEQKLETNHLP 58 (290)
Q Consensus 40 l~s~~~~~~~~~L~~~~lP 58 (290)
++-+|...+...||+-++|
T Consensus 2 ~siEEtnk~r~~lGLkplp 20 (21)
T 3plv_C 2 LSIEETNELRASLGLKLIP 20 (26)
T ss_dssp CCHHHHHHHHHHTTCCCCC
T ss_pred ccHHHHHHHHHHcCCCCCC
Confidence 4557788899999998887
No 6
>1usm_A DCOH, hepatocyte nuclear factor 1-alpha; transcriptional stimulator, dimerization cofactor, dehydratase, 4A-carbinolamine dehydratase; 1.2A {Thermus thermophilus} SCOP: d.74.1.1 PDB: 1uso_A
Probab=15.02 E-value=1.4e+02 Score=21.78 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCCCCceeeCCcEEEEEE
Q 022891 45 VERWEQKLETNHLPEMVFGESCLVLKH 71 (290)
Q Consensus 45 ~~~~~~~L~~~~lPEMvFg~N~L~i~h 71 (290)
+..+.++.+ |-||+.++-|.|.|+-
T Consensus 31 Va~~Ae~~~--HHPdi~~~y~~V~v~l 55 (80)
T 1usm_A 31 VGALAEREN--HHPRLTVEWGRVTVEW 55 (80)
T ss_dssp HHHHHHHHT--CCCEEEEETTEEEEEE
T ss_pred HHHHHHHhC--CCCcEEEeCCEEEEEE
Confidence 445667777 6799999999999854
No 7
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=15.01 E-value=3.4e+02 Score=25.19 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=30.8
Q ss_pred EEEEEEEEEeCCc--hheeeeeeEEee--c--eEEEEeeeeEEeEecC
Q 022891 191 SLLTVKVRVMPSS--WFLLLRFWLRVD--G--VLMRLRDTRMHCVFSD 232 (290)
Q Consensus 191 s~lsVKiRVMp~~--ffvL~RffLRVD--~--VlvRi~DTRiyhef~~ 232 (290)
.+++=+|+++.+- .+--.|.-.++| | ...+..+|||+|.++.
T Consensus 383 ~~~~p~v~~~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 430 (444)
T 3soa_A 383 TILNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSEETRVWHRRDG 430 (444)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETT
T ss_pred eecCCceEEecCcceeeeeeeeeeeeccCCCccccchhhheeeeecCC
Confidence 7889999999743 333334444555 4 7899999999999963
No 8
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=14.92 E-value=3.8e+02 Score=20.07 Aligned_cols=40 Identities=25% Similarity=0.153 Sum_probs=27.2
Q ss_pred EEEEEEEEeCC-chheeeeeeEEe--ece--EEEEeeeeEEeEec
Q 022891 192 LLTVKVRVMPS-SWFLLLRFWLRV--DGV--LMRLRDTRMHCVFS 231 (290)
Q Consensus 192 ~lsVKiRVMp~-~ffvL~RffLRV--D~V--lvRi~DTRiyhef~ 231 (290)
...++||+... +-.+..|+-+.. +|. ..+.+-|++|+..+
T Consensus 74 ~~~~~v~~~g~d~Avv~~~~~~~~~~~g~~~~~~~~~t~vw~k~~ 118 (134)
T 3fsd_A 74 LSDAVVRAAGEDGRVVVVRAVTAGVYDGEAFTETLRFTRIWRRTQ 118 (134)
T ss_dssp EEEEEEEESSTTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEET
T ss_pred EeccEEEEeCCCEEEEEEEEEEEEEeCCcEEEEEEEEEEEEEECC
Confidence 45678888877 666666655443 454 34678999999876
No 9
>1jsg_A Oncogene product P14TCL1; proto-oncogene, CL1 gene, T cell leukemia, oncoprotein, microsome; 2.50A {Homo sapiens} SCOP: b.63.1.1
Probab=12.53 E-value=1.8e+02 Score=23.43 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=24.4
Q ss_pred ceeeceeeeeeccccCCCceEEEEEEEEEeCC
Q 022891 171 PILFYDEVVLYEDELADNGVSLLTVKVRVMPS 202 (290)
Q Consensus 171 pILFy~ev~LfEDEL~DnG~s~lsVKiRVMp~ 202 (290)
.-|+..+--.|||| ||=+-+.|+|+.-|+
T Consensus 16 ~~Lw~~~~gvYeDE---~~RtWv~v~ve~~~~ 44 (114)
T 1jsg_A 16 DRLWAWEKFVYLDE---KQHAWLPLTIEIKDR 44 (114)
T ss_dssp SEEEEEETTEEEET---TCCEEEEEEEEEETT
T ss_pred CEEEEecCCeEEcC---CCcEEEEEEEEecCC
Confidence 37899999999999 777888888888766
No 10
>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}
Probab=10.67 E-value=1.1e+02 Score=24.98 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCceEEEchhhhhhc
Q 022891 65 SCLVLKHVESGTKIHFNAFDALSG 88 (290)
Q Consensus 65 N~L~i~h~~sg~~i~Fna~DAL~~ 88 (290)
|.|.|-|..+||-|...|++.|-.
T Consensus 79 ~vlaID~a~~Gfnis~~Amn~LT~ 102 (125)
T 3suk_A 79 NLVAIDHAGNGFNVAQAAMDELTN 102 (125)
T ss_dssp EEEEEEECSSSEEECHHHHHHHHT
T ss_pred EEEEEecCCCceeecHHHHHHhcC
Confidence 668889998999999999888874
Done!