Query 022891
Match_columns 290
No_of_seqs 110 out of 219
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 12:51:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022891.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022891hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1usma_ d.74.1.1 (A:) Pterin-4 21.1 39 0.0029 23.1 3.5 25 45-71 31-55 (80)
2 d1b77a2 d.131.1.2 (A:111-228) 13.5 28 0.002 26.1 1.0 24 40-63 8-31 (118)
3 d1orua_ b.58.1.2 (A:) Hypothet 12.3 46 0.0033 26.0 2.1 33 37-70 66-98 (182)
4 d1dcpa_ d.74.1.1 (A:) Pterin-4 12.1 86 0.0063 22.0 3.5 25 45-71 48-72 (99)
5 d1ru0a_ d.74.1.1 (A:) DcoH-lik 11.6 91 0.0066 21.9 3.5 25 45-71 50-74 (100)
6 d1zhva1 d.58.18.8 (A:2-61) Hyp 11.0 56 0.0041 21.7 1.9 35 56-90 23-57 (60)
7 d2icga1 d.369.1.1 (A:1-158) Un 8.0 75 0.0055 23.4 1.8 21 39-60 25-45 (158)
8 d1lvaa3 a.4.5.35 (A:511-574) C 7.7 57 0.0041 21.3 0.8 13 216-228 51-63 (64)
9 d2prva1 d.369.1.1 (A:1-152) Un 7.4 85 0.0062 22.8 1.8 20 40-60 23-42 (152)
10 d1v9ka_ d.265.1.3 (A:) Ribosom 6.9 58 0.0042 25.8 0.6 8 279-286 190-197 (227)
No 1
>d1usma_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) {Thermus thermophilus [TaxId: 274]}
Probab=21.10 E-value=39 Score=23.14 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCCCCceeeCCcEEEEEE
Q 022891 45 VERWEQKLETNHLPEMVFGESCLVLKH 71 (290)
Q Consensus 45 ~~~~~~~L~~~~lPEMvFg~N~L~i~h 71 (290)
+..++++++ |-|++.++-|.|+|+-
T Consensus 31 va~~ae~~~--HHPdi~~~~~~V~i~l 55 (80)
T d1usma_ 31 VGALAEREN--HHPRLTVEWGRVTVEW 55 (80)
T ss_dssp HHHHHHHHT--CCCEEEEETTEEEEEE
T ss_pred HHHHHHHhc--CCCeEEEEcCeEEEEE
Confidence 446777887 8899999999999853
No 2
>d1b77a2 d.131.1.2 (A:111-228) gp45 sliding clamp {Bacteriophage RB69 [TaxId: 12353]}
Probab=13.45 E-value=28 Score=26.08 Aligned_cols=24 Identities=0% Similarity=0.094 Sum_probs=19.7
Q ss_pred cCchHHHHHHHHcCCCCCCceeeC
Q 022891 40 LNSSSVERWEQKLETNHLPEMVFG 63 (290)
Q Consensus 40 l~s~~~~~~~~~L~~~~lPEMvFg 63 (290)
|+++++.++.+.-....+||++|-
T Consensus 8 L~~ddl~~l~kAa~vl~lpdl~~~ 31 (118)
T d1b77a2 8 IKAEDLQQLLRVSRGLQIDTIAIT 31 (118)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eCHHHHHHHHHHHHhcCCCcEEEE
Confidence 578888888887777789999985
No 3
>d1orua_ b.58.1.2 (A:) Hypothetical protein YuaD {Bacillus subtilis [TaxId: 1423]}
Probab=12.27 E-value=46 Score=26.02 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=27.4
Q ss_pred cCccCchHHHHHHHHcCCCCCCceeeCCcEEEEE
Q 022891 37 RSILNSSSVERWEQKLETNHLPEMVFGESCLVLK 70 (290)
Q Consensus 37 ~pIl~s~~~~~~~~~L~~~~lPEMvFg~N~L~i~ 70 (290)
=.|++++.++++++.+|..+++--.||.| |.++
T Consensus 66 Vslis~E~l~~~~~~lg~~~l~pg~~geN-l~v~ 98 (182)
T d1orua_ 66 ISIVSIEECNEIALKMGVPRILPEWLGAN-VAVS 98 (182)
T ss_dssp EEEEEHHHHHHHHHHHTCSCCCGGGGTCS-EEEE
T ss_pred EEEecHHHHHHHHHHcCCCcCCcccccce-EEEe
Confidence 34889999999999999867888899999 4554
No 4
>d1dcpa_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.09 E-value=86 Score=21.98 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCCCCceeeCCcEEEEEE
Q 022891 45 VERWEQKLETNHLPEMVFGESCLVLKH 71 (290)
Q Consensus 45 ~~~~~~~L~~~~lPEMvFg~N~L~i~h 71 (290)
+..+.++++ |-|++.++-|.+.|+-
T Consensus 48 Va~~ae~~~--HHP~i~~~y~~V~i~l 72 (99)
T d1dcpa_ 48 VALQAEKLD--HHPEWFNVYNKVHITL 72 (99)
T ss_dssp HHHHHHHHT--CCCEEEEETTEEEEEE
T ss_pred HHHHHHHhC--CCccEEEeeeEEEEEE
Confidence 346677877 8899999999999854
No 5
>d1ru0a_ d.74.1.1 (A:) DcoH-like protein DCoH2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.64 E-value=91 Score=21.89 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCCCCceeeCCcEEEEEE
Q 022891 45 VERWEQKLETNHLPEMVFGESCLVLKH 71 (290)
Q Consensus 45 ~~~~~~~L~~~~lPEMvFg~N~L~i~h 71 (290)
+-.+.++.+ |-|++.++-|.++|+-
T Consensus 50 va~~ae~~~--HHPdi~~~y~~V~v~l 74 (100)
T d1ru0a_ 50 VALQAEKMN--HHPEWFNVYNKVQITL 74 (100)
T ss_dssp HHHHHHHHT--CCCEEEEETTEEEEEE
T ss_pred HHHHHHHhC--CCCeEEEeccEEEEEE
Confidence 345667777 8999999999999853
No 6
>d1zhva1 d.58.18.8 (A:2-61) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=11.02 E-value=56 Score=21.67 Aligned_cols=35 Identities=9% Similarity=0.050 Sum_probs=30.0
Q ss_pred CCCceeeCCcEEEEEEcCCCceEEEchhhhhhccc
Q 022891 56 HLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWK 90 (290)
Q Consensus 56 ~lPEMvFg~N~L~i~h~~sg~~i~Fna~DAL~~v~ 90 (290)
++|+-+|+.....|.....+.+|---+..+...|+
T Consensus 23 ~iP~w~~~~~f~sItrT~dELSvVC~~~~vP~~v~ 57 (60)
T d1zhva1 23 AIPAWADGGGFVSITRTDDELSIVCLIDRIPQDVR 57 (60)
T ss_dssp CCCTTTSSSSCCEEEECSSCEEEEEEGGGSCTTSE
T ss_pred CCCccccCCCEEEEEecCCceEEEECcccCccccc
Confidence 78999999999999999999998888777666654
No 7
>d2icga1 d.369.1.1 (A:1-158) Uncharacterized protein Lin2918 {Listeria innocua [TaxId: 1642]}
Probab=8.02 E-value=75 Score=23.37 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=17.5
Q ss_pred ccCchHHHHHHHHcCCCCCCce
Q 022891 39 ILNSSSVERWEQKLETNHLPEM 60 (290)
Q Consensus 39 Il~s~~~~~~~~~L~~~~lPEM 60 (290)
=.+.+++.++|+.||+ .||+.
T Consensus 25 ~at~E~I~~~E~~LG~-~lP~~ 45 (158)
T d2icga1 25 TGTPELIKIYQDALGN-EFPET 45 (158)
T ss_dssp CCCHHHHHHHHHHHTC-CCCHH
T ss_pred CCCHHHHHHHHHHHCC-CCCHH
Confidence 3567789999999996 89985
No 8
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=7.73 E-value=57 Score=21.28 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=9.5
Q ss_pred ceEEEEeeeeEEe
Q 022891 216 GVLMRLRDTRMHC 228 (290)
Q Consensus 216 ~VlvRi~DTRiyh 228 (290)
|.|+||.+-|+||
T Consensus 51 G~lvkI~~d~yfh 63 (64)
T d1lvaa3 51 GVLVKINDEFYWH 63 (64)
T ss_dssp TSEEESSSSBEEE
T ss_pred CCEEEeccccccc
Confidence 6677777777776
No 9
>d2prva1 d.369.1.1 (A:1-152) Uncharacterized protein YobK {Bacillus subtilis [TaxId: 1423]}
Probab=7.42 E-value=85 Score=22.82 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=16.6
Q ss_pred cCchHHHHHHHHcCCCCCCce
Q 022891 40 LNSSSVERWEQKLETNHLPEM 60 (290)
Q Consensus 40 l~s~~~~~~~~~L~~~~lPEM 60 (290)
.+.+++.++++.||+ .||+-
T Consensus 23 as~e~I~~~E~~Lg~-~LP~~ 42 (152)
T d2prva1 23 ASHENIGRIEENLQC-DLPNS 42 (152)
T ss_dssp CCHHHHHHHHHHHTS-CCCHH
T ss_pred CCHHHHHHHHHHhCC-CCCHH
Confidence 457789999999997 88873
No 10
>d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase C, RluC {Escherichia coli [TaxId: 562]}
Probab=6.91 E-value=58 Score=25.83 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=3.5
Q ss_pred EEEEEEec
Q 022891 279 HRTQKLKI 286 (290)
Q Consensus 279 ~~~ekl~~ 286 (290)
.+..+|.|
T Consensus 190 LHa~~L~f 197 (227)
T d1v9ka_ 190 LHAAALKF 197 (227)
T ss_dssp EEEEEEEE
T ss_pred HHccccEe
Confidence 34444444
Done!