BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022892
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NX3|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|C Chain C, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|D Chain D, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|E Chain E, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|F Chain F, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|G Chain G, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|H Chain H, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|I Chain I, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|J Chain J, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|K Chain K, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX3|L Chain L, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 267
Score = 247 bits (631), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 129/245 (52%), Positives = 165/245 (67%), Gaps = 7/245 (2%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG-LPLVFKSSFDKANRTSSKSFRGPGMV 73
E F ++AGPN IESEE ++++ + IK +S K + VFKSSFDKANR+S SFRG G+
Sbjct: 2 EKFLVIAGPNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLE 61
Query: 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 133
G+K L KVK + + I TD+HE+ Q E V +VADIIQIPAFLCRQTDLL+AAAKTG+ +
Sbjct: 62 YGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAV 121
Query: 134 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV 193
N+KKGQF A N EK++ G + + ERGT FGYN+L+VD R+L M++ V+
Sbjct: 122 NVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQW-AKVI 180
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
D THS+Q P G G SGG+RE I + R A+AVG DGVFME H +P A D P
Sbjct: 181 YDATHSVQLPGGL-----GDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAP 235
Query: 254 TQWPL 258
T PL
Sbjct: 236 TALPL 240
>pdb|2NWR|A Chain A, Crystal Structure Of C11n Mutant Of Kdo8p Synthase In
Complex With Pep
pdb|2NWR|B Chain B, Crystal Structure Of C11n Mutant Of Kdo8p Synthase In
Complex With Pep
pdb|2NWS|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NWS|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX1|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2NX1|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 267
Score = 247 bits (631), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 129/245 (52%), Positives = 165/245 (67%), Gaps = 7/245 (2%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG-LPLVFKSSFDKANRTSSKSFRGPGMV 73
E F ++AGPN IESEE ++++ + IK +S K + VFKSSFDKANR+S SFRG G+
Sbjct: 2 EKFLVIAGPNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLE 61
Query: 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 133
G+K L KVK + + I TD+HE+ Q E V +VADIIQIPAFLCRQTDLL+AAAKTG+ +
Sbjct: 62 YGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAV 121
Query: 134 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV 193
N+KKGQF A N EK++ G + + ERGT FGYN+L+VD R+L M++ V+
Sbjct: 122 NVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQW-AKVI 180
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
D THS+Q P G G SGG+RE I + R A+AVG DGVFME H +P A D
Sbjct: 181 YDATHSVQLPGGL-----GDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAS 235
Query: 254 TQWPL 258
TQ PL
Sbjct: 236 TQLPL 240
>pdb|2NXG|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXG|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|C Chain C, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|D Chain D, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|E Chain E, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|F Chain F, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|G Chain G, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|H Chain H, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|I Chain I, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|J Chain J, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|K Chain K, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXH|L Chain L, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 263
Score = 247 bits (630), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 129/245 (52%), Positives = 165/245 (67%), Gaps = 7/245 (2%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG-LPLVFKSSFDKANRTSSKSFRGPGMV 73
E F ++AGPN IESEE ++++ + IK +S K + VFKSSFDKANR+S SFRG G+
Sbjct: 1 EKFLVIAGPNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLE 60
Query: 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 133
G+K L KVK + + I TD+HE+ Q E V +VADIIQIPAFLCRQTDLL+AAAKTG+ +
Sbjct: 61 YGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAV 120
Query: 134 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV 193
N+KKGQF A N EK++ G + + ERGT FGYN+L+VD R+L M++ V+
Sbjct: 121 NVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQW-AKVI 179
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
D THS+Q P G G SGG+RE I + R A+AVG DGVFME H +P A D P
Sbjct: 180 YDATHSVQLPGGL-----GDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAP 234
Query: 254 TQWPL 258
T PL
Sbjct: 235 TALPL 239
>pdb|2NXI|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|C Chain C, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|D Chain D, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|E Chain E, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|F Chain F, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|G Chain G, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|H Chain H, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|I Chain I, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|J Chain J, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|K Chain K, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase.
pdb|2NXI|L Chain L, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 263
Score = 244 bits (622), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 128/245 (52%), Positives = 164/245 (66%), Gaps = 7/245 (2%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG-LPLVFKSSFDKANRTSSKSFRGPGMV 73
E F ++AG N IESEE ++++ + IK +S K + VFKSSFDKANR+S SFRG G+
Sbjct: 1 EKFLVIAGMNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLE 60
Query: 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 133
G+K L KVK + + I TD+HE+ Q E V +VADIIQIPAFLCRQTDLL+AAAKTG+ +
Sbjct: 61 YGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAV 120
Query: 134 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV 193
N+KKGQF A N EK++ G + + ERGT FGYN+L+VD R+L M++ V+
Sbjct: 121 NVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQW-AKVI 179
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
D THS+Q P G G SGG+RE I + R A+AVG DGVFME H +P A D
Sbjct: 180 YDATHSVQLPGGL-----GDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAS 234
Query: 254 TQWPL 258
TQ PL
Sbjct: 235 TQLPL 239
>pdb|2EF9|A Chain A, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
pdb|2EF9|B Chain B, Structural And Mechanistic Changes Along An Engineered
Path From Metallo To Non-Metallo Kdo8p Synthase
Length = 267
Score = 243 bits (621), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 128/245 (52%), Positives = 164/245 (66%), Gaps = 7/245 (2%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG-LPLVFKSSFDKANRTSSKSFRGPGMV 73
E F ++AG N IESEE ++++ + IK +S K + VFKSSFDKANR+S SFRG G+
Sbjct: 2 EKFLVIAGMNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLE 61
Query: 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 133
G+K L KVK + + I TD+HE+ Q E V +VADIIQIPAFLCRQTDLL+AAAKTG+ +
Sbjct: 62 YGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAV 121
Query: 134 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV 193
N+KKGQF A N EK++ G + + ERGT FGYN+L+VD R+L M++ V+
Sbjct: 122 NVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQW-AKVI 180
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
D THS+Q P G G SGG+RE I + R A+AVG DGVFME H +P A D P
Sbjct: 181 YDATHSVQLPGGL-----GDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAP 235
Query: 254 TQWPL 258
T PL
Sbjct: 236 TALPL 240
>pdb|1FWN|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep
pdb|1FWN|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep
pdb|1FWS|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
Cadmium
pdb|1FWS|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
Cadmium
pdb|1FWT|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, E4p
And Cadmium
pdb|1FWT|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, E4p
And Cadmium
pdb|1FWW|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, A5p
And Cadmium
pdb|1FWW|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep, A5p
And Cadmium
pdb|1FX6|A Chain A, Aquifex Aeolicus Kdo8p Synthase
pdb|1FX6|B Chain B, Aquifex Aeolicus Kdo8p Synthase
pdb|1FXP|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
pdb|1FXP|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
pdb|1FXQ|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
A5p
pdb|1FXQ|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Pep And
A5p
pdb|1FY6|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
And A5p
pdb|1FY6|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Cadmium
And A5p
pdb|1JCX|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With Api And
Cadmium
pdb|1JCX|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With Api And
Cadmium
pdb|1JCY|A Chain A, Aquifex Aeolicus Kdo8p Synthase In Complex With R5p, Pep
And Cadmium
pdb|1JCY|B Chain B, Aquifex Aeolicus Kdo8p Synthase In Complex With R5p, Pep
And Cadmium
pdb|1PE1|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Cadmium And 2-Pga
pdb|1PE1|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Cadmium And 2-Pga
pdb|1PCK|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Z-Methyl-Pep
pdb|1PCK|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Z-Methyl-Pep
pdb|1PCW|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Cadmium And App, A
Bisubstrate Inhibitor
pdb|1PCW|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Cadmium And App, A
Bisubstrate Inhibitor
pdb|2A21|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Pep, Po4, And Zn2+
pdb|2A21|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Pep, Po4, And Zn2+
pdb|2A2I|A Chain A, Aquifex Aeolicus Kdo8ps In Complex With Pep, A5p, Zn2+
pdb|2A2I|B Chain B, Aquifex Aeolicus Kdo8ps In Complex With Pep, A5p, Zn2+
pdb|3E0I|A Chain A, Cu2+ Substituted Aquifex Aeolicus Kdo8ps In Complex With
Pep
pdb|3E0I|B Chain B, Cu2+ Substituted Aquifex Aeolicus Kdo8ps In Complex With
Pep
pdb|3E12|A Chain A, Cu2+ Substituted Aquifex Aeolicus Kdo8ps In Complex With
Kdo8p
pdb|3E12|B Chain B, Cu2+ Substituted Aquifex Aeolicus Kdo8ps In Complex With
Kdo8p
Length = 267
Score = 243 bits (620), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 128/245 (52%), Positives = 164/245 (66%), Gaps = 7/245 (2%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG-LPLVFKSSFDKANRTSSKSFRGPGMV 73
E F ++AGP IESEE ++++ + IK +S K + VFKSSFDKANR+S SFRG G+
Sbjct: 2 EKFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLE 61
Query: 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 133
G+K L KVK + + I TD+HE+ Q E V +VADIIQIPAFLCRQTDLL+AAAKTG+ +
Sbjct: 62 YGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAV 121
Query: 134 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV 193
N+KKGQF A N EK++ G + + ERGT FGYN+L+VD R+L M++ V+
Sbjct: 122 NVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQW-AKVI 180
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
D THS+Q P G G SGG+RE I + R A+AVG DGVFME H +P A D
Sbjct: 181 YDATHSVQLPGGL-----GDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAS 235
Query: 254 TQWPL 258
TQ PL
Sbjct: 236 TQLPL 240
>pdb|1T8X|A Chain A, R106g Kdo8ps With Pep And A5p
pdb|1T8X|B Chain B, R106g Kdo8ps With Pep And A5p
pdb|1T96|A Chain A, R106g Kdo8ps With Pep
pdb|1T96|B Chain B, R106g Kdo8ps With Pep
pdb|1T99|A Chain A, R106g Kdo8ps Without Substrates
pdb|1T99|B Chain B, R106g Kdo8ps Without Substrates
pdb|1ZHA|A Chain A, A. Aeolicus Kdo8ps R106g Mutant In Complex With Pep And
R5p
pdb|1ZHA|B Chain B, A. Aeolicus Kdo8ps R106g Mutant In Complex With Pep And
R5p
pdb|1ZJI|A Chain A, Aquifex Aeolicus Kdo8ps R106g Mutant In Complex With 2pga
And R5p
pdb|1ZJI|B Chain B, Aquifex Aeolicus Kdo8ps R106g Mutant In Complex With 2pga
And R5p
Length = 267
Score = 239 bits (611), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 127/245 (51%), Positives = 163/245 (66%), Gaps = 7/245 (2%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG-LPLVFKSSFDKANRTSSKSFRGPGMV 73
E F ++AGP IESEE ++++ + IK +S K + VFKSSFDKANR+S SFRG G+
Sbjct: 2 EKFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLE 61
Query: 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 133
G+K L KVK + + I TD+HE+ Q E V +VADIIQIPAFLC QTDLL+AAAKTG+ +
Sbjct: 62 YGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCGQTDLLLAAAKTGRAV 121
Query: 134 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV 193
N+KKGQF A N EK++ G + + ERGT FGYN+L+VD R+L M++ V+
Sbjct: 122 NVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQW-AKVI 180
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
D THS+Q P G G SGG+RE I + R A+AVG DGVFME H +P A D
Sbjct: 181 YDATHSVQLPGGL-----GDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAS 235
Query: 254 TQWPL 258
TQ PL
Sbjct: 236 TQLPL 240
>pdb|1LRN|A Chain A, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Cadmium
pdb|1LRN|B Chain B, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Cadmium
pdb|1LRO|A Chain A, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Pep And Cadmium
pdb|1LRO|B Chain B, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Pep And Cadmium
pdb|1LRQ|A Chain A, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Pep, A5p And Cadmium
pdb|1LRQ|B Chain B, Aquifex Aeolicus Kdo8p Synthase H185g Mutant In Complex
With Pep, A5p And Cadmium
Length = 267
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 127/245 (51%), Positives = 163/245 (66%), Gaps = 7/245 (2%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG-LPLVFKSSFDKANRTSSKSFRGPGMV 73
E F ++AGP IESEE ++++ + IK +S K + VFKSSFDKANR+S SFRG G+
Sbjct: 2 EKFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLE 61
Query: 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 133
G+K L KVK + + I TD+HE+ Q E V +VADIIQIPAFLCRQTDLL+AAAKTG+ +
Sbjct: 62 YGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAV 121
Query: 134 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV 193
N+KKGQF A N EK++ G + + ERGT FGYN+L+VD R+L M++ V+
Sbjct: 122 NVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYNNLVVDFRSLPIMKQW-AKVI 180
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
D T S+Q P G G SGG+RE I + R A+AVG DGVFME H +P A D
Sbjct: 181 YDATGSVQLPGGL-----GDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDAS 235
Query: 254 TQWPL 258
TQ PL
Sbjct: 236 TQLPL 240
>pdb|3TML|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
Length = 288
Score = 238 bits (607), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 125/250 (50%), Positives = 162/250 (64%), Gaps = 11/250 (4%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
+PFFL+AG V+ESE+ + A +K I K+ +P ++KSS+DKANR+S KSFRG GM E
Sbjct: 16 QPFFLIAGTCVVESEQMTIDTAGRLKEICEKLNVPFIYKSSYDKANRSSGKSFRGLGMDE 75
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GL+IL +VK +P++TDVH + E+V V D++Q PAFLCRQTD + A A++GK +N
Sbjct: 76 GLRILSEVKRQLGLPVLTDVHSIDEIEQVASVVDVLQTPAFLCRQTDFIHACARSGKPVN 135
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNP------NVMVCERGTMFGYNDLIVDPRNLEWMREA 188
IKKGQF A M N +K R A M CERG FGYN+L+ D R+L MRE
Sbjct: 136 IKKGQFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGVSFGYNNLVSDMRSLAIMRET 195
Query: 189 NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA 248
N PVV D THS+Q P G+ +SGG RE +P +AR A+A GV G+FME H +P A
Sbjct: 196 NAPVVFDATHSVQLPGGQG-----TSSGGQREFVPVLARAAVATGVAGLFMETHPNPAEA 250
Query: 249 PVDGPTQWPL 258
DGP PL
Sbjct: 251 KSDGPNAVPL 260
>pdb|1D9E|A Chain A, Structure Of E. Coli Kdo8p Synthase
pdb|1D9E|B Chain B, Structure Of E. Coli Kdo8p Synthase
pdb|1D9E|C Chain C, Structure Of E. Coli Kdo8p Synthase
pdb|1D9E|D Chain D, Structure Of E. Coli Kdo8p Synthase
pdb|1GG0|A Chain A, Crystal Structure Analysis Of Kdop Synthase At 3.0 A
pdb|1G7V|A Chain A, Crystal Structures Of Kdo8p Synthase In Its Binary
Complexes With The Mechanism-Based Inhibitor
pdb|1PHQ|A Chain A, Crystal Structure Of Kdo8p Synthase In Its Binary Complex
With Substrate Analog E-Fpep
pdb|1PHW|A Chain A, Crystal Structure Of Kdo8p Synthase In Its Binary Complex
With Substrate Analog 1-Deoxy-A5p
pdb|1PL9|A Chain A, Crystal Structure Of Kdo8p Synthase In Its Binary Complex
With Substrate Analog Z-Fpep
pdb|1Q3N|A Chain A, Crystal Structure Of Kdo8p Synthase In Its Binary Complex
With Substrate Pep
pdb|1X6U|A Chain A, Kdo8p Synthase In It's Binary Complex With The Product
Kdo8p
pdb|1X8F|A Chain A, Crystal Structure Of Apo-kdo8p Synthase
Length = 284
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/269 (44%), Positives = 171/269 (63%), Gaps = 7/269 (2%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
PF L G NV+ES + MR+ +H +++ K+G+P VFK+SFDKANR+S S+RGPG+ EG
Sbjct: 18 PFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEG 77
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
+KI +++K + + I+TDVHE Q + V V D+IQ+PAFL RQTDL+ A AKTG +IN+
Sbjct: 78 MKIFQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINV 137
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCPVV 193
KK QF + M N +K + GN V++C+RG FGY++L+VD M++ N PV+
Sbjct: 138 KKPQFVSPGQMGNIVDKFKEGGNEKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVI 197
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
DVTH+LQ D G ASGG R + +AR +AVG+ G+F+E H DP +A DGP
Sbjct: 198 FDVTHALQC-----RDPFGAASGGRRAQVAELARAGMAVGLAGLFIEAHPDPEHAKCDGP 252
Query: 254 TQWPLRNXXXXXXXXVAIAKVSKGKQRMN 282
+ PL AI + KG + ++
Sbjct: 253 SALPLAKLEPFLKQMKAIDDLVKGFEELD 281
>pdb|2QKF|A Chain A, Crystal Structure Of 3-Deoxy-D-Manno-Octulosonate
8-Phosphate Synthase (Kdo8ps) From Neisseria
Meningitidis
pdb|2QKF|B Chain B, Crystal Structure Of 3-Deoxy-D-Manno-Octulosonate
8-Phosphate Synthase (Kdo8ps) From Neisseria
Meningitidis
pdb|2QKF|C Chain C, Crystal Structure Of 3-Deoxy-D-Manno-Octulosonate
8-Phosphate Synthase (Kdo8ps) From Neisseria
Meningitidis
pdb|2QKF|D Chain D, Crystal Structure Of 3-Deoxy-D-Manno-Octulosonate
8-Phosphate Synthase (Kdo8ps) From Neisseria
Meningitidis
Length = 280
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/246 (48%), Positives = 160/246 (65%), Gaps = 7/246 (2%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
PF L G NV+ES + ++ H ++ K+G+P +FK+SFDKANR+S S+RG G+ EG
Sbjct: 15 PFVLFGGINVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKANRSSIHSYRGVGLEEG 74
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
LKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++NI
Sbjct: 75 LKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVVNI 134
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCPVV 193
KK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N PV+
Sbjct: 135 KKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVI 194
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
DVTHSLQ D G ASGG R +A +A + G+F+E H DP A DGP
Sbjct: 195 FDVTHSLQTR-----DAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKCDGP 249
Query: 254 TQWPLR 259
+ PL
Sbjct: 250 SALPLH 255
>pdb|3T4C|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
Length = 288
Score = 236 bits (601), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 124/250 (49%), Positives = 162/250 (64%), Gaps = 11/250 (4%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
+PFFL+AG V+ESE+ + A +K I K+ +P ++KSS+DKANR+S KSFRG GM E
Sbjct: 16 QPFFLIAGTCVVESEQMTIDTAGRLKEICAKLNVPFIYKSSYDKANRSSGKSFRGLGMDE 75
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GL+IL +VK +P++TDVH + E+V V D++Q PAFLCRQTD + A A++GK +N
Sbjct: 76 GLRILGEVKRQLGLPVLTDVHSIDEIEQVASVVDVLQTPAFLCRQTDFIHACARSGKPVN 135
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNP------NVMVCERGTMFGYNDLIVDPRNLEWMREA 188
IKKGQF A M N +K R A M CERG FGYN+L+ D R+L MRE
Sbjct: 136 IKKGQFLAPHDMKNVIDKAREAAREAGLSEDRFMACERGVSFGYNNLVSDMRSLAIMRET 195
Query: 189 NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA 248
+ PVV D THS+Q P G+ +SGG RE +P +AR A+A GV G+FME H +P A
Sbjct: 196 SAPVVFDATHSVQLPGGQG-----TSSGGQREFVPVLARAAVATGVAGLFMETHPNPAEA 250
Query: 249 PVDGPTQWPL 258
DGP PL
Sbjct: 251 KSDGPNAVPL 260
>pdb|3QPY|A Chain A, Crystal Structure Of A Mutant (K57a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QPY|B Chain B, Crystal Structure Of A Mutant (K57a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QPY|C Chain C, Crystal Structure Of A Mutant (K57a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QPY|D Chain D, Crystal Structure Of A Mutant (K57a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 280
Score = 234 bits (596), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 119/246 (48%), Positives = 159/246 (64%), Gaps = 7/246 (2%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
PF L G NV+ES + ++ H ++ K+G+P +FK+SFD ANR+S S+RG G+ EG
Sbjct: 15 PFVLFGGINVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDAANRSSIHSYRGVGLEEG 74
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
LKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++NI
Sbjct: 75 LKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVVNI 134
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCPVV 193
KK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N PV+
Sbjct: 135 KKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVI 194
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
DVTHSLQ D G ASGG R +A +A + G+F+E H DP A DGP
Sbjct: 195 FDVTHSLQTR-----DAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKCDGP 249
Query: 254 TQWPLR 259
+ PL
Sbjct: 250 SALPLH 255
>pdb|3STE|A Chain A, Crystal Structure Of A Mutant (Q202a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STE|B Chain B, Crystal Structure Of A Mutant (Q202a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STE|C Chain C, Crystal Structure Of A Mutant (Q202a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STE|D Chain D, Crystal Structure Of A Mutant (Q202a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 280
Score = 233 bits (595), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 119/246 (48%), Positives = 159/246 (64%), Gaps = 7/246 (2%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
PF L G NV+ES + ++ H ++ K+G+P +FK+SFDKANR+S S+RG G+ EG
Sbjct: 15 PFVLFGGINVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKANRSSIHSYRGVGLEEG 74
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
LKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++NI
Sbjct: 75 LKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVVNI 134
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCPVV 193
KK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N PV+
Sbjct: 135 KKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVI 194
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
DVTHSL D G ASGG R +A +A + G+F+E H DP A DGP
Sbjct: 195 FDVTHSLATR-----DAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKCDGP 249
Query: 254 TQWPLR 259
+ PL
Sbjct: 250 SALPLH 255
>pdb|3QPZ|A Chain A, Crystal Structure Of The N59a Mutant Of The
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QPZ|B Chain B, Crystal Structure Of The N59a Mutant Of The
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QPZ|C Chain C, Crystal Structure Of The N59a Mutant Of The
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QPZ|D Chain D, Crystal Structure Of The N59a Mutant Of The
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 280
Score = 233 bits (594), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 119/246 (48%), Positives = 159/246 (64%), Gaps = 7/246 (2%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
PF L G NV+ES + ++ H ++ K+G+P +FK+SFDKA R+S S+RG G+ EG
Sbjct: 15 PFVLFGGINVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKAARSSIHSYRGVGLEEG 74
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
LKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++NI
Sbjct: 75 LKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVVNI 134
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCPVV 193
KK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N PV+
Sbjct: 135 KKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVI 194
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
DVTHSLQ D G ASGG R +A +A + G+F+E H DP A DGP
Sbjct: 195 FDVTHSLQTR-----DAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKCDGP 249
Query: 254 TQWPLR 259
+ PL
Sbjct: 250 SALPLH 255
>pdb|1G7U|A Chain A, Crystal Structures Of Kdo8p Synthase In Its Binary Complex
With Substrate Phosphoenol Pyruvate
Length = 284
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 119/269 (44%), Positives = 170/269 (63%), Gaps = 7/269 (2%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
PF L G NV+ES + MR+ +H +++ K+G+P VFK+SFDKANR+S S+RGPG+ EG
Sbjct: 18 PFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEG 77
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
+KI +++K + + I+TDVHE Q + V V D+IQ+PAFL RQTDL+ A AKTG +IN+
Sbjct: 78 MKIFQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINV 137
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCPVV 193
KK QF + M N +K + GN V++C+RG FGY++L+VD M++ N PV+
Sbjct: 138 KKPQFVSPGQMGNIVDKFKEGGNEKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVI 197
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
DVTH+LQ D ASGG R + +AR +AVG+ G+F+E H DP +A DGP
Sbjct: 198 FDVTHALQC-----RDPFVAASGGRRAQVAELARAGMAVGLAGLFIEAHPDPEHAKCDGP 252
Query: 254 TQWPLRNXXXXXXXXVAIAKVSKGKQRMN 282
+ PL AI + KG + ++
Sbjct: 253 SALPLAKLEPFLKQMKAIDDLVKGFEELD 281
>pdb|3QQ0|A Chain A, Crystal Structure Of A Deletion Mutant (N59) Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QQ0|B Chain B, Crystal Structure Of A Deletion Mutant (N59) Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QQ0|C Chain C, Crystal Structure Of A Deletion Mutant (N59) Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QQ0|D Chain D, Crystal Structure Of A Deletion Mutant (N59) Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 279
Score = 229 bits (584), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/246 (48%), Positives = 159/246 (64%), Gaps = 8/246 (3%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
PF L G NV+ES + ++ H ++ K+G+P +FK+SFDKA R+S S+RG G+ EG
Sbjct: 15 PFVLFGGINVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKA-RSSIHSYRGVGLEEG 73
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
LKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++NI
Sbjct: 74 LKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVVNI 133
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCPVV 193
KK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N PV+
Sbjct: 134 KKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVI 193
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
DVTHSLQ D G ASGG R +A +A + G+F+E H DP A DGP
Sbjct: 194 FDVTHSLQTR-----DAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKCDGP 248
Query: 254 TQWPLR 259
+ PL
Sbjct: 249 SALPLH 254
>pdb|1O60|A Chain A, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|B Chain B, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|C Chain C, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|D Chain D, Crystal Structure Of Kdo-8-Phosphate Synthase
Length = 292
Score = 229 bits (583), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/246 (47%), Positives = 161/246 (65%), Gaps = 7/246 (2%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
+PF L G NV+ES + ++ + ++ K+G+P VFK+SFDKANR+S S+RGPG E
Sbjct: 17 KPFVLFGGXNVLESRDXAXQVCEAYVKVTEKLGVPYVFKASFDKANRSSIHSYRGPGXEE 76
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
GLKI +++K + + I+TDVHE QC+ V V DIIQ+PAFL RQTDL+ A AKTG +IN
Sbjct: 77 GLKIFQELKDTFGVKIITDVHEIYQCQPVADVVDIIQLPAFLARQTDLVEAXAKTGAVIN 136
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREAN--CPV 192
+KK QF + S N EK+ GN +++C+RGT FGY++LIVD ++A+ PV
Sbjct: 137 VKKPQFLSPSQXGNIVEKIEECGNDKIILCDRGTNFGYDNLIVDXLGFSVXKKASKGSPV 196
Query: 193 VADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDG 252
+ DVTHSLQ D G AS G R + +AR+ +AVG+ G+F+E H +P A DG
Sbjct: 197 IFDVTHSLQC-----RDPFGAASSGRRAQVTELARSGLAVGIAGLFLEAHPNPNQAKCDG 251
Query: 253 PTQWPL 258
P+ PL
Sbjct: 252 PSALPL 257
>pdb|3FYO|A Chain A, Crystal Structure Of The Triple Mutant (N23cD247EP249A) OF
3-Deoxy- D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3FYO|B Chain B, Crystal Structure Of The Triple Mutant (N23cD247EP249A) OF
3-Deoxy- D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3FYO|C Chain C, Crystal Structure Of The Triple Mutant (N23cD247EP249A) OF
3-Deoxy- D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3FYO|D Chain D, Crystal Structure Of The Triple Mutant (N23cD247EP249A) OF
3-Deoxy- D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 280
Score = 228 bits (581), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 117/246 (47%), Positives = 158/246 (64%), Gaps = 7/246 (2%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
PF L G V+ES + ++ H ++ K+G+P +FK+SFDKANR+S S+RG G+ EG
Sbjct: 15 PFVLFGGICVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKANRSSIHSYRGVGLEEG 74
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
LKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++NI
Sbjct: 75 LKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVVNI 134
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCPVV 193
KK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N PV+
Sbjct: 135 KKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVI 194
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
DVTHSLQ D G ASGG R +A +A + G+F+E H DP A +G
Sbjct: 195 FDVTHSLQTR-----DAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKCEGA 249
Query: 254 TQWPLR 259
+ PL
Sbjct: 250 SALPLH 255
>pdb|3FYP|A Chain A, Crystal Structure Of The Quadruple Mutant
(n23c/c246s/d247e/p249a) Of 3-deoxy-d-manno-octulosonate
8-phosphate Synthase (kdo8ps) From Neisseria
Meningitidis
pdb|3FYP|B Chain B, Crystal Structure Of The Quadruple Mutant
(n23c/c246s/d247e/p249a) Of 3-deoxy-d-manno-octulosonate
8-phosphate Synthase (kdo8ps) From Neisseria
Meningitidis
pdb|3FYP|C Chain C, Crystal Structure Of The Quadruple Mutant
(n23c/c246s/d247e/p249a) Of 3-deoxy-d-manno-octulosonate
8-phosphate Synthase (kdo8ps) From Neisseria
Meningitidis
pdb|3FYP|D Chain D, Crystal Structure Of The Quadruple Mutant
(n23c/c246s/d247e/p249a) Of 3-deoxy-d-manno-octulosonate
8-phosphate Synthase (kdo8ps) From Neisseria
Meningitidis
Length = 280
Score = 228 bits (580), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 117/246 (47%), Positives = 158/246 (64%), Gaps = 7/246 (2%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
PF L G V+ES + ++ H ++ K+G+P +FK+SFDKANR+S S+RG G+ EG
Sbjct: 15 PFVLFGGICVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKANRSSIHSYRGVGLEEG 74
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
LKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++NI
Sbjct: 75 LKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVVNI 134
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCPVV 193
KK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N PV+
Sbjct: 135 KKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVI 194
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
DVTHSLQ D G ASGG R +A +A + G+F+E H DP A +G
Sbjct: 195 FDVTHSLQTR-----DAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKSEGA 249
Query: 254 TQWPLR 259
+ PL
Sbjct: 250 SALPLH 255
>pdb|3QQ1|A Chain A, Crystal Structure Of A Double Mutant [a58p, Del(N59)] Of
3-Deoxy-D- Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QQ1|B Chain B, Crystal Structure Of A Double Mutant [a58p, Del(N59)] Of
3-Deoxy-D- Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QQ1|C Chain C, Crystal Structure Of A Double Mutant [a58p, Del(N59)] Of
3-Deoxy-D- Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3QQ1|D Chain D, Crystal Structure Of A Double Mutant [a58p, Del(N59)] Of
3-Deoxy-D- Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 279
Score = 227 bits (578), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 118/246 (47%), Positives = 158/246 (64%), Gaps = 8/246 (3%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
PF L G NV+ES + ++ H ++ K+G+P +FK+SFDK R+S S+RG G+ EG
Sbjct: 15 PFVLFGGINVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKP-RSSIHSYRGVGLEEG 73
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
LKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++NI
Sbjct: 74 LKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVVNI 133
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCPVV 193
KK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N PV+
Sbjct: 134 KKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVI 193
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
DVTHSLQ D G ASGG R +A +A + G+F+E H DP A DGP
Sbjct: 194 FDVTHSLQTR-----DAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKCDGP 248
Query: 254 TQWPLR 259
+ PL
Sbjct: 249 SALPLH 254
>pdb|3SZ8|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei
pdb|3SZ8|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei
pdb|3SZ8|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei
pdb|3SZ8|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei
pdb|3TMQ|A Chain A, Crystal Structure Of A 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei In Complex With
D-Arabinose-5-Phosphate
pdb|3TMQ|B Chain B, Crystal Structure Of A 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei In Complex With
D-Arabinose-5-Phosphate
pdb|3TMQ|C Chain C, Crystal Structure Of A 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei In Complex With
D-Arabinose-5-Phosphate
pdb|3TMQ|D Chain D, Crystal Structure Of A 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei In Complex With
D-Arabinose-5-Phosphate
pdb|3UND|A Chain A, Substrate-Bound Crystal Structure Of
2-Dehydro-3-Deoxyphosphooctonate Aldolase From
Burkholderia Pseudomallei
pdb|3UND|B Chain B, Substrate-Bound Crystal Structure Of
2-Dehydro-3-Deoxyphosphooctonate Aldolase From
Burkholderia Pseudomallei
pdb|3UND|C Chain C, Substrate-Bound Crystal Structure Of
2-Dehydro-3-Deoxyphosphooctonate Aldolase From
Burkholderia Pseudomallei
pdb|3UND|D Chain D, Substrate-Bound Crystal Structure Of
2-Dehydro-3-Deoxyphosphooctonate Aldolase From
Burkholderia Pseudomallei
Length = 285
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 116/247 (46%), Positives = 158/247 (63%), Gaps = 7/247 (2%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
PF L G NV+ES + + + +++ K+G+P VFK+SFDKANR+S S+RG G+ EG
Sbjct: 20 PFVLFGGINVLESLDFTLDVCGEYVAVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEG 79
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
LKI +VK + +P++TDVHE Q V ++AD++Q+PAFL RQTDL+VA AK GK +N+
Sbjct: 80 LKIFAEVKARFGVPVITDVHEAEQAAPVAEIADVLQVPAFLARQTDLVVAIAKAGKPVNV 139
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCPVV 193
KK QF + + + + K GN VM+CERG+ FGY++L+VD M E CPV+
Sbjct: 140 KKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPVI 199
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
DVTHSLQ D G ASGG R + +AR IAVG+ G+F+E H DP A DGP
Sbjct: 200 FDVTHSLQC-----RDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPDPDRARCDGP 254
Query: 254 TQWPLRN 260
+ PL
Sbjct: 255 SALPLHQ 261
>pdb|3E9A|A Chain A, Crystal Structure Of 2-dehydro-3-deoxyphosphooctonate
Aldolase From Vibrio Cholerae O1 Biovar Eltor Str.
N16961
Length = 286
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 161/246 (65%), Gaps = 7/246 (2%)
Query: 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74
+PF L AG NV+ES + M++ +H ++ K+G+P VFK+SFDKANR+S S+RGPG+ E
Sbjct: 20 KPFTLFAGMNVLESRDLAMQICEHYVKVTDKLGIPYVFKASFDKANRSSVHSYRGPGLEE 79
Query: 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
G+KI +++K + + I+TDVH Q + V V D+IQ+PAFL RQTDL+ A AKTG +IN
Sbjct: 80 GMKIFQELKETFGVKIITDVHTEAQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVIN 139
Query: 135 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREAN--CPV 192
+KK QF + + N EK GN V++CERG+ GY++L+VD M++A+ P+
Sbjct: 140 VKKPQFMSPGQVGNIVEKFAECGNDKVILCERGSCHGYDNLVVDMLGFGVMKQASNGSPI 199
Query: 193 VADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDG 252
+ DVTHSLQ D G ASGG RE +A+ +A G+ G+F+E H +P A DG
Sbjct: 200 IFDVTHSLQM-----RDPSGAASGGRREQTVELAKAGLATGIAGLFIEAHPNPDKARCDG 254
Query: 253 PTQWPL 258
P+ PL
Sbjct: 255 PSALPL 260
>pdb|3STF|A Chain A, Crystal Structure Of A Mutant (S211a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STF|B Chain B, Crystal Structure Of A Mutant (S211a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STF|C Chain C, Crystal Structure Of A Mutant (S211a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STF|D Chain D, Crystal Structure Of A Mutant (S211a) Of
3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 280
Score = 224 bits (572), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 119/246 (48%), Positives = 160/246 (65%), Gaps = 7/246 (2%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
PF L G NV+ES + ++ H ++ K+G+P +FK+SFDKANR+S S+RG G+ EG
Sbjct: 15 PFVLFGGINVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKANRSSIHSYRGVGLEEG 74
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
LKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++NI
Sbjct: 75 LKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVVNI 134
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCPVV 193
KK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N PV+
Sbjct: 135 KKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVI 194
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
DVTHSLQ D G A+GG R +A +A + G+F+E H DP A DGP
Sbjct: 195 FDVTHSLQTR-----DAGSAAAGGRRAQALDLALAGMATRLAGLFLESHPDPKLAKCDGP 249
Query: 254 TQWPLR 259
+ PL
Sbjct: 250 SALPLH 255
>pdb|3STC|A Chain A, Crystal Structure Of Loop 7 Truncated Mutant Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STC|B Chain B, Crystal Structure Of Loop 7 Truncated Mutant Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STC|C Chain C, Crystal Structure Of Loop 7 Truncated Mutant Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
pdb|3STC|D Chain D, Crystal Structure Of Loop 7 Truncated Mutant Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Synthase
(Kdo8ps) From Neisseria Meningitidis
Length = 269
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/246 (46%), Positives = 157/246 (63%), Gaps = 18/246 (7%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
PF L G NV+ES + ++ H ++ K+G+P +FK+SFDKANR+S S+RG G+ EG
Sbjct: 15 PFVLFGGINVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKANRSSIHSYRGVGLEEG 74
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
LKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++NI
Sbjct: 75 LKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVVNI 134
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCPVV 193
KK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N PV+
Sbjct: 135 KKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVI 194
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
DVTHSL + A + LD +A +A + G+F+E H DP A DGP
Sbjct: 195 FDVTHSLGRRA-QALD---------------LALAGMATRLAGLFLESHPDPKLAKCDGP 238
Query: 254 TQWPLR 259
+ PL
Sbjct: 239 SALPLH 244
>pdb|3FS2|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Bruciella Melitensis At 1.85a Resolution
pdb|3FS2|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Bruciella Melitensis At 1.85a Resolution
Length = 298
Score = 216 bits (549), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 122/262 (46%), Positives = 168/262 (64%), Gaps = 5/262 (1%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
P L+AGP +E+ +H MA +K ++ K+G+ LV+KSSFDKANRTS K+ RG G+ +
Sbjct: 41 PLALIAGPCQMETRDHAFEMAGRLKEMTDKLGIGLVYKSSFDKANRTSLKAARGIGLEKA 100
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
L++ +K Y P++TD+H QC V V D++QIPAFLCRQTDLL+AAA+TG+++N+
Sbjct: 101 LEVFSDLKKEYGFPVLTDIHTEEQCAAVAPVVDVLQIPAFLCRQTDLLIAAARTGRVVNV 160
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVAD 195
KKGQF A M N K+ +GNPNV+ ERG FGYN L+ D R L M PV+ D
Sbjct: 161 KKGQFLAPWDMKNVLAKITESGNPNVLATERGVSFGYNTLVSDMRALPIMAGLGAPVIFD 220
Query: 196 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQ 255
THS+QQP G+ ++GG RE + +AR A+AVGV G F+E H+DP NAP DGP
Sbjct: 221 ATHSVQQPGGQG-----GSTGGQREFVETLARAAVAVGVAGFFIETHEDPDNAPSDGPNM 275
Query: 256 WPLRNXXXXXXXXVAIAKVSKG 277
P+ +A +++K
Sbjct: 276 VPIDKMPALLEKLMAFDRIAKA 297
>pdb|3STG|A Chain A, Crystal Structure Of A58p, Del(N59), And Loop 7 Truncated
Mutant Of 3- Deoxy-D-Manno-Octulosonate 8-Phosphate
Synthase (Kdo8ps) From Neisseria Meningitidis
pdb|3STG|B Chain B, Crystal Structure Of A58p, Del(N59), And Loop 7 Truncated
Mutant Of 3- Deoxy-D-Manno-Octulosonate 8-Phosphate
Synthase (Kdo8ps) From Neisseria Meningitidis
pdb|3STG|C Chain C, Crystal Structure Of A58p, Del(N59), And Loop 7 Truncated
Mutant Of 3- Deoxy-D-Manno-Octulosonate 8-Phosphate
Synthase (Kdo8ps) From Neisseria Meningitidis
pdb|3STG|D Chain D, Crystal Structure Of A58p, Del(N59), And Loop 7 Truncated
Mutant Of 3- Deoxy-D-Manno-Octulosonate 8-Phosphate
Synthase (Kdo8ps) From Neisseria Meningitidis
Length = 268
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 155/246 (63%), Gaps = 19/246 (7%)
Query: 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG 75
PF L G NV+ES + ++ H ++ K+G+P +FK+SFDK R+S S+RG G+ EG
Sbjct: 15 PFVLFGGINVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKP-RSSIHSYRGVGLEEG 73
Query: 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINI 135
LKI EKVK + IP++TDVHE QC+ V +V D+IQ+PAFL RQTDL+VA AKTG ++NI
Sbjct: 74 LKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVVNI 133
Query: 136 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCPVV 193
KK QF + S M N EK AGN +++CERG+ FGY++L+VD M++ N PV+
Sbjct: 134 KKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVI 193
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
DVTHSL + A + LD +A +A + G+F+E H DP A DGP
Sbjct: 194 FDVTHSLGRRA-QALD---------------LALAGMATRLAGLFLESHPDPKLAKCDGP 237
Query: 254 TQWPLR 259
+ PL
Sbjct: 238 SALPLH 243
>pdb|1ZCO|A Chain A, Crystal Structure Of Pyrococcus Furiosus
3-Deoxy-D-Arabino- Heptulosonate 7-Phosphate Synthase
pdb|1ZCO|B Chain B, Crystal Structure Of Pyrococcus Furiosus
3-Deoxy-D-Arabino- Heptulosonate 7-Phosphate Synthase
Length = 262
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 124/250 (49%), Gaps = 26/250 (10%)
Query: 9 NQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFR 68
N +K E F ++AGP IES E IM++A+ + + KV FK RTS SF+
Sbjct: 16 NDVKFGEGFTIIAGPCSIESREQIMKVAEFLAEVGIKVLRGGAFKP------RTSPYSFQ 69
Query: 69 GPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAK 128
G G + L+ + + Y + VT+V +T E V K +DI+QI A + +LL K
Sbjct: 70 GYGE-KALRWMREAADEYGLVTVTEVMDTRHVELVAKYSDILQIGARNSQNFELLKEVGK 128
Query: 129 TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDPRNLEWMR 186
+ +K+G ++ SAE + GN NV++CERG T +D + ++
Sbjct: 129 VENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVK 188
Query: 187 E-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 245
E ++ P++ D +H PAG+ R L+ +A+ A A+G DG+ +EVH +P
Sbjct: 189 ELSHLPIIVDPSH----PAGR------------RSLVIPLAKAAYAIGADGIMVEVHPEP 232
Query: 246 LNAPVDGPTQ 255
A D Q
Sbjct: 233 EKALSDSQQQ 242
>pdb|4GRS|A Chain A, Crystal Structure Of A Chimeric Dah7ps
pdb|4GRS|B Chain B, Crystal Structure Of A Chimeric Dah7ps
pdb|4GRS|C Chain C, Crystal Structure Of A Chimeric Dah7ps
pdb|4GRS|D Chain D, Crystal Structure Of A Chimeric Dah7ps
Length = 333
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 120/242 (49%), Gaps = 26/242 (10%)
Query: 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGL 76
F ++AGP IES + IM++A+ + + KV FK RTS SF+G G + L
Sbjct: 95 FTIIAGPCSIESRDQIMKVAEFLAEVGIKVLRGGAFKP------RTSPYSFQGYGE-KAL 147
Query: 77 KILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIK 136
+ + + Y + VT+V +T E V K +DI+QI A + +LL K + +K
Sbjct: 148 RWMREAADEYGLVTVTEVMDTRHVELVAKYSDILQIGARNSQNFELLKEVGKVENPVLLK 207
Query: 137 KGQFCASSVMVNSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDPRNLEWMRE-ANCPVV 193
+G ++ SAE + GN NV++CERG T +D + ++E ++ P++
Sbjct: 208 RGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPII 267
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 253
D +H PAG+ R L+ +A+ A A+G DG+ +EVH +P A D
Sbjct: 268 VDPSH----PAGR------------RSLVIPLAKAAYAIGADGIMVEVHPEPEKALSDSQ 311
Query: 254 TQ 255
Q
Sbjct: 312 QQ 313
>pdb|3NVT|A Chain A, 1.95 Angstrom Crystal Structure Of A Bifunctional
3-Deoxy-7- Phosphoheptulonate SynthaseCHORISMATE MUTASE
(AROA) FROM LISTERIA Monocytogenes Egd-E
pdb|3NVT|B Chain B, 1.95 Angstrom Crystal Structure Of A Bifunctional
3-Deoxy-7- Phosphoheptulonate SynthaseCHORISMATE MUTASE
(AROA) FROM LISTERIA Monocytogenes Egd-E
pdb|3TFC|A Chain A, 1.95 Angstrom Crystal Structure Of A Bifunctional
3-Deoxy-7- Phosphoheptulonate SynthaseCHORISMATE MUTASE
(AROA) FROM LISTERIA Monocytogenes Egd-E In Complex With
Phosphoenolpyruvate
pdb|3TFC|B Chain B, 1.95 Angstrom Crystal Structure Of A Bifunctional
3-Deoxy-7- Phosphoheptulonate SynthaseCHORISMATE MUTASE
(AROA) FROM LISTERIA Monocytogenes Egd-E In Complex With
Phosphoenolpyruvate
Length = 385
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 121/246 (49%), Gaps = 29/246 (11%)
Query: 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMV 73
EP F+ GP +ES E + +A+ IK+ GL L+ +F RTS F+G G+
Sbjct: 141 GEPVFVF-GPCSVESYEQVAAVAESIKA----KGLKLIRGGAFKP--RTSPYDFQGLGL- 192
Query: 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKII 133
EGLKIL++V Y + +++++ E D+IQI A + +LL AA + K I
Sbjct: 193 EGLKILKRVSDEYGLGVISEIVTPADIEVALDYVDVIQIGARNMQNFELLKAAGRVDKPI 252
Query: 134 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWM----REAN 189
+K+G + +AE + GN +++CERG + Y + ++ + +E +
Sbjct: 253 LLKRGLSATIEEFIGAAEYIMSQGNGKIILCERG-IRTYEKATRNTLDISAVPILKKETH 311
Query: 190 CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAP 249
PV+ DVTHS +G L+PC A+ A+A+ DGV EVH DP A
Sbjct: 312 LPVMVDVTHS---------------TGRKDLLLPC-AKAALAIEADGVMAEVHPDPAVAL 355
Query: 250 VDGPTQ 255
D Q
Sbjct: 356 SDSAQQ 361
>pdb|3PG8|A Chain A, Truncated Form Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Thermotoga Maritima
pdb|3PG8|B Chain B, Truncated Form Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Thermotoga Maritima
Length = 272
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 26/239 (10%)
Query: 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGL 76
F ++AGP +E E +M A + + KV +K RTS SF+G G +GL
Sbjct: 29 FTIIAGPXSVEGREMLMETAHFLSELGVKVLRGGAYKP------RTSPYSFQGLGE-KGL 81
Query: 77 KILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIK 136
+ L + Y + +VT+ +V + ADIIQI A + LL A K + +K
Sbjct: 82 EYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLK 141
Query: 137 KGQFCASSVMVNSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDPRNLEWMR-EANCPVV 193
+G + SAE + +GN +++CERG T +D + +R E++ P++
Sbjct: 142 RGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPIL 201
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDG 252
D +H SGG R+L+ ++R AIAVG G+ +EVH +P A DG
Sbjct: 202 VDPSH----------------SGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDG 244
>pdb|1RZM|A Chain A, Crystal Structure Of
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
(Dahps) From Thermotoga Maritima Complexed With Cd2+,
Pep And E4p
pdb|1RZM|B Chain B, Crystal Structure Of
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
(Dahps) From Thermotoga Maritima Complexed With Cd2+,
Pep And E4p
pdb|3PG9|A Chain A, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|B Chain B, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|C Chain C, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|D Chain D, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|E Chain E, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|F Chain F, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|G Chain G, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|H Chain H, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
Length = 338
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 26/239 (10%)
Query: 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGL 76
F ++AGP +E E +M A + + KV +K RTS SF+G G +GL
Sbjct: 95 FTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKP------RTSPYSFQGLGE-KGL 147
Query: 77 KILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIK 136
+ L + Y + +VT+ +V + ADIIQI A + LL A K + +K
Sbjct: 148 EYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLK 207
Query: 137 KGQFCASSVMVNSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDPRNLEWMR-EANCPVV 193
+G + SAE + +GN +++CERG T +D + +R E++ P++
Sbjct: 208 RGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPIL 267
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDG 252
D +H SGG R+L+ ++R AIAVG G+ +EVH +P A DG
Sbjct: 268 VDPSH----------------SGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDG 310
>pdb|1VR6|A Chain A, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
pdb|1VR6|B Chain B, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
pdb|1VR6|C Chain C, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
pdb|1VR6|D Chain D, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
Length = 350
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 26/239 (10%)
Query: 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGL 76
F ++AGP +E E +M A + + KV +K RTS SF+G G +GL
Sbjct: 107 FTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKP------RTSPYSFQGLGE-KGL 159
Query: 77 KILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIK 136
+ L + Y + +VT+ +V + ADIIQI A + LL A K + +K
Sbjct: 160 EYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLK 219
Query: 137 KGQFCASSVMVNSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDPRNLEWMR-EANCPVV 193
+G + SAE + +GN +++CERG T +D + +R E++ P++
Sbjct: 220 RGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPIL 279
Query: 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDG 252
D +H SGG R+L+ ++R AIAVG G+ +EVH +P A DG
Sbjct: 280 VDPSH----------------SGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDG 322
>pdb|1VS1|A Chain A, Crystal Structure Of 3-Deoxy-D-Arabino-Heptulosonate-7-
Phosphate Synthase (Dahp Synthase) From Aeropyrum Pernix
In Complex With Mn2+ And Pep
pdb|1VS1|B Chain B, Crystal Structure Of 3-Deoxy-D-Arabino-Heptulosonate-7-
Phosphate Synthase (Dahp Synthase) From Aeropyrum Pernix
In Complex With Mn2+ And Pep
pdb|1VS1|C Chain C, Crystal Structure Of 3-Deoxy-D-Arabino-Heptulosonate-7-
Phosphate Synthase (Dahp Synthase) From Aeropyrum Pernix
In Complex With Mn2+ And Pep
pdb|1VS1|D Chain D, Crystal Structure Of 3-Deoxy-D-Arabino-Heptulosonate-7-
Phosphate Synthase (Dahp Synthase) From Aeropyrum Pernix
In Complex With Mn2+ And Pep
Length = 276
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 120/240 (50%), Gaps = 26/240 (10%)
Query: 19 LLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI 78
++AGP +ES E + A +K + G ++ +F RTS SF+G +EGLK+
Sbjct: 41 VIAGPCSVESWEQVREAALAVK----EAGAHMLRGGAFKP--RTSPYSFQG-LGLEGLKL 93
Query: 79 LEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKG 138
L + +P+VT+V + E V + AD++QI A + LL ++GK + +K+G
Sbjct: 94 LRRAGDEAGLPVVTEVLDPRHVETVSRYADMLQIGARNMQNFPLLREVGRSGKPVLLKRG 153
Query: 139 QFCASSVMVNSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDPRNLEWMREA-NCPVVAD 195
++ +AE + L GN V++ ERG T +D + ++EA + PV+ D
Sbjct: 154 FGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEATHLPVIVD 213
Query: 196 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQ 255
+H PAG+ R L+P +A+ +A G DG+ +EVH +P A D Q
Sbjct: 214 PSH----PAGR------------RSLVPALAKAGLAAGADGLIVEVHPNPEEALSDAKQQ 257
>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
pdb|3N2Y|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
Length = 314
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 15/71 (21%)
Query: 180 RNLEWM-REANCPVVADVTHSLQQPAGKKLDGGGVASGGL---------RELIP----CI 225
R++E + RE P VA+V + + Q G GG VA GG+ REL+P CI
Sbjct: 132 RSMELIAREDENPKVAEVIYPIMQVNGIHYVGGDVAVGGMEQRKIHMLARELLPKKVVCI 191
Query: 226 ARTAIAVGVDG 236
+ G+DG
Sbjct: 192 -HNPVLTGLDG 201
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR 180
D + A G I + G + +++ M + + V V E+G+ FG N + V+P
Sbjct: 605 DFVAATTNAGYTIELAGGGYFSAAGMTAAIDSV-------VSQIEKGSTFGINLIYVNPF 657
Query: 181 NLEW 184
L+W
Sbjct: 658 MLQW 661
>pdb|3QPM|A Chain A, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|B Chain B, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|C Chain C, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|D Chain D, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
pdb|3QPM|E Chain E, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena
Crocea
Length = 240
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 158 NPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG 217
N V+ C + F + I+ PR + P+++D+TH + + G L+ G G
Sbjct: 111 NTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRG 170
Query: 218 L 218
L
Sbjct: 171 L 171
>pdb|1DJ2|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ2|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 443
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 188 ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241
A C A+ H++ GKK V SG L E C+ + V + G+F E+
Sbjct: 49 ARCQGGANAGHTIYNSEGKKFALHLVPSGILNEDTTCVIGNGVVVHLPGLFKEI 102
>pdb|3TJK|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Reduced Form
pdb|3TJK|B Chain B, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Reduced Form
pdb|3TJK|C Chain C, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Reduced Form
pdb|3TJK|D Chain D, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Reduced Form
pdb|3TJK|E Chain E, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Reduced Form
Length = 254
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 158 NPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG 217
N V+ C + F + I PR + P+++D+TH + + G L+ G G
Sbjct: 125 NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRG 184
Query: 218 L 218
L
Sbjct: 185 L 185
>pdb|3TJF|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Reduced Form
pdb|3TJF|B Chain B, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Reduced Form
pdb|3TJF|C Chain C, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Reduced Form
pdb|3TJF|D Chain D, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Reduced Form
pdb|3TJF|E Chain E, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Reduced Form
pdb|3TJG|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Oxidized Form
pdb|3TJG|B Chain B, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Oxidized Form
pdb|3TJG|C Chain C, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Oxidized Form
pdb|3TJG|D Chain D, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Oxidized Form
pdb|3TJG|E Chain E, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In
Oxidized Form
Length = 254
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 158 NPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG 217
N V+ C + F + I PR + P+++D+TH + + G L+ G G
Sbjct: 125 NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRG 184
Query: 218 L 218
L
Sbjct: 185 L 185
>pdb|3TKS|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
Three Different Redox States
pdb|3TKS|B Chain B, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
Three Different Redox States
pdb|3TKS|C Chain C, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
Three Different Redox States
pdb|3TKS|D Chain D, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
Three Different Redox States
Length = 246
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 158 NPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG 217
N V+ C + F + I PR + P+++D+TH + + G L+ G G
Sbjct: 117 NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRG 176
Query: 218 L 218
L
Sbjct: 177 L 177
>pdb|3TJJ|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Sulfenylated Form
pdb|3TJJ|B Chain B, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Sulfenylated Form
pdb|3TJJ|C Chain C, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Sulfenylated Form
pdb|3TJJ|D Chain D, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Sulfenylated Form
pdb|3TJJ|E Chain E, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant
In Sulfenylated Form
Length = 254
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 158 NPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG 217
N V+ C + F + I PR + P+++D+TH + + G L+ G G
Sbjct: 125 NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRG 184
Query: 218 L 218
L
Sbjct: 185 L 185
>pdb|2PN8|A Chain A, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|B Chain B, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|C Chain C, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|D Chain D, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|E Chain E, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|F Chain F, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|G Chain G, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|H Chain H, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|I Chain I, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|J Chain J, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
Length = 211
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 158 NPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG 217
N V+ C + F + I PR + P+++D+TH + + G L+ G G
Sbjct: 82 NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRG 141
Query: 218 L 218
L
Sbjct: 142 L 142
>pdb|3TKP|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
The Reduced Form
pdb|3TKP|B Chain B, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
The Reduced Form
pdb|3TKP|C Chain C, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
The Reduced Form
pdb|3TKP|D Chain D, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
The Reduced Form
pdb|3TKP|E Chain E, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
The Reduced Form
pdb|3TKQ|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With Mixed Conformation
pdb|3TKQ|B Chain B, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With Mixed Conformation
pdb|3TKQ|C Chain C, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With Mixed Conformation
pdb|3TKQ|D Chain D, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With Mixed Conformation
pdb|3TKQ|E Chain E, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With Mixed Conformation
pdb|3TKS|E Chain E, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In
Three Different Redox States
Length = 246
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 158 NPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG 217
N V+ C + F + I PR + P+++D+TH + + G L+ G G
Sbjct: 117 NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRG 176
Query: 218 L 218
L
Sbjct: 177 L 177
>pdb|3TJB|A Chain A, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv
pdb|3TJB|B Chain B, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv
pdb|3TJB|C Chain C, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv
pdb|3TJB|D Chain D, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv
pdb|3TJB|E Chain E, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv
Length = 254
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 158 NPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG 217
N V+ C + F + I PR + P+++D+TH + + G L+ G G
Sbjct: 125 NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRG 184
Query: 218 L 218
L
Sbjct: 185 L 185
>pdb|3TKR|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|I Chain I, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|G Chain G, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|C Chain C, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|F Chain F, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|D Chain D, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|B Chain B, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|H Chain H, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|E Chain E, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
pdb|3TKR|J Chain J, Crystal Structure Of Full-Length Human Peroxiredoxin 4
With T118e Mutation
Length = 246
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 158 NPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGG 217
N V+ C + F + I PR + P+++D+TH + + G L+ G G
Sbjct: 117 NTEVVACSVDSQFEHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRG 176
Query: 218 L 218
L
Sbjct: 177 L 177
>pdb|3SBC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|E Chain E, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|F Chain F, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|G Chain G, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|H Chain H, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|I Chain I, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|J Chain J, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
Length = 216
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 179 PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGL 218
PR + N P++AD HSL + G ++ GVA GL
Sbjct: 107 PRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGL 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,131,667
Number of Sequences: 62578
Number of extensions: 325409
Number of successful extensions: 801
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 677
Number of HSP's gapped (non-prelim): 51
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)