Query 022892
Match_columns 290
No_of_seqs 156 out of 1360
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:54:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03033 2-dehydro-3-deoxyphos 100.0 8.8E-81 1.9E-85 570.1 31.1 290 1-290 1-290 (290)
2 PRK05198 2-dehydro-3-deoxyphos 100.0 5.2E-74 1.1E-78 522.1 29.3 260 10-274 4-263 (264)
3 TIGR01362 KDO8P_synth 3-deoxy- 100.0 9.4E-74 2E-78 518.9 29.7 257 15-276 1-257 (258)
4 PRK12457 2-dehydro-3-deoxyphos 100.0 3E-73 6.5E-78 520.5 30.1 263 10-277 10-274 (281)
5 PRK13396 3-deoxy-7-phosphohept 100.0 9.3E-68 2E-72 502.5 28.1 245 10-277 95-343 (352)
6 PRK08673 3-deoxy-7-phosphohept 100.0 2.9E-67 6.4E-72 497.6 27.4 241 14-277 91-334 (335)
7 PRK13398 3-deoxy-7-phosphohept 100.0 3.7E-67 8E-72 484.2 27.0 241 11-275 23-266 (266)
8 TIGR01361 DAHP_synth_Bsub phos 100.0 7E-66 1.5E-70 474.5 27.1 237 11-271 21-260 (260)
9 PRK13397 3-deoxy-7-phosphohept 100.0 3.1E-65 6.7E-70 465.6 26.4 233 15-270 14-249 (250)
10 COG2877 KdsA 3-deoxy-D-manno-o 100.0 7.5E-64 1.6E-68 446.2 24.8 263 10-277 11-273 (279)
11 COG2876 AroA 3-deoxy-D-arabino 100.0 5.1E-64 1.1E-68 454.1 24.1 243 11-276 40-285 (286)
12 PRK12595 bifunctional 3-deoxy- 100.0 3.9E-62 8.4E-67 467.5 28.3 242 11-276 114-358 (360)
13 TIGR03569 NeuB_NnaB N-acetylne 100.0 1.3E-61 2.8E-66 458.5 22.6 242 17-285 1-270 (329)
14 TIGR03586 PseI pseudaminic aci 100.0 5.2E-61 1.1E-65 454.1 23.6 242 16-284 1-268 (327)
15 COG2089 SpsE Sialic acid synth 100.0 4.7E-59 1E-63 432.5 20.5 252 9-287 7-284 (347)
16 PF00793 DAHP_synth_1: DAHP sy 100.0 5.5E-57 1.2E-61 417.1 18.7 253 11-275 11-269 (270)
17 PF03102 NeuB: NeuB family; I 100.0 5.5E-54 1.2E-58 391.1 16.7 214 39-277 1-238 (241)
18 PRK09261 phospho-2-dehydro-3-d 100.0 1.8E-44 3.8E-49 341.2 22.2 223 12-258 49-315 (349)
19 TIGR00034 aroFGH phospho-2-deh 100.0 1.6E-41 3.4E-46 320.2 26.1 223 12-254 44-311 (344)
20 PRK12755 phospho-2-dehydro-3-d 100.0 2.7E-41 5.7E-46 319.3 22.7 224 12-248 50-312 (353)
21 PRK12822 phospho-2-dehydro-3-d 100.0 6.7E-38 1.4E-42 295.1 22.8 221 12-249 49-311 (356)
22 PRK12756 phospho-2-dehydro-3-d 100.0 3E-36 6.4E-41 283.6 21.5 221 12-249 48-310 (348)
23 COG0722 AroG 3-deoxy-D-arabino 100.0 2.8E-33 6E-38 259.2 17.1 220 12-248 49-311 (351)
24 PRK07259 dihydroorotate dehydr 97.9 0.0031 6.7E-08 59.1 21.8 226 10-279 8-291 (301)
25 cd04740 DHOD_1B_like Dihydroor 97.9 0.0038 8.3E-08 58.2 21.4 225 10-279 6-288 (296)
26 cd04732 HisA HisA. Phosphorib 97.7 0.003 6.6E-08 56.6 17.3 173 31-243 30-222 (234)
27 TIGR01037 pyrD_sub1_fam dihydr 97.7 0.0058 1.3E-07 57.2 18.9 227 10-280 7-292 (300)
28 PRK07565 dihydroorotate dehydr 97.7 0.0075 1.6E-07 57.6 19.7 229 1-273 1-291 (334)
29 cd02810 DHOD_DHPD_FMN Dihydroo 97.6 0.0062 1.3E-07 56.5 17.6 201 10-241 5-273 (289)
30 PRK00043 thiE thiamine-phospha 97.5 0.027 5.9E-07 49.4 19.7 178 16-244 8-192 (212)
31 PRK11613 folP dihydropteroate 97.3 0.062 1.3E-06 50.6 20.4 158 28-197 36-219 (282)
32 PRK14024 phosphoribosyl isomer 97.2 0.036 7.9E-07 50.6 17.5 187 32-264 34-238 (241)
33 cd04738 DHOD_2_like Dihydrooro 97.2 0.028 6E-07 53.7 16.7 174 10-194 45-285 (327)
34 PRK02083 imidazole glycerol ph 97.1 0.031 6.8E-07 51.1 16.4 188 32-266 32-245 (253)
35 cd07944 DRE_TIM_HOA_like 4-hyd 97.1 0.028 6.1E-07 52.2 16.2 188 28-244 18-217 (266)
36 PRK13585 1-(5-phosphoribosyl)- 97.1 0.069 1.5E-06 48.2 17.9 172 32-243 34-225 (241)
37 TIGR00007 phosphoribosylformim 97.1 0.053 1.1E-06 48.6 16.9 173 31-243 29-221 (230)
38 PRK09140 2-dehydro-3-deoxy-6-p 97.1 0.21 4.6E-06 44.8 20.9 192 7-270 3-201 (206)
39 cd04731 HisF The cyclase subun 97.0 0.11 2.3E-06 47.2 18.3 191 31-266 28-241 (243)
40 PRK00748 1-(5-phosphoribosyl)- 96.9 0.086 1.9E-06 47.2 16.9 173 31-243 31-223 (233)
41 cd03174 DRE_TIM_metallolyase D 96.9 0.081 1.8E-06 47.9 16.7 181 28-243 17-223 (265)
42 TIGR03572 WbuZ glycosyl amidat 96.9 0.075 1.6E-06 47.8 16.3 177 31-243 31-230 (232)
43 PRK05286 dihydroorotate dehydr 96.9 0.038 8.3E-07 53.1 15.0 119 74-194 126-294 (344)
44 cd04739 DHOD_like Dihydroorota 96.9 0.27 5.8E-06 47.0 20.6 173 70-276 82-292 (325)
45 cd02940 DHPD_FMN Dihydropyrimi 96.8 0.12 2.6E-06 48.7 17.8 147 73-243 84-284 (299)
46 TIGR00735 hisF imidazoleglycer 96.8 0.15 3.4E-06 46.7 18.2 191 31-266 31-247 (254)
47 cd00331 IGPS Indole-3-glycerol 96.8 0.14 3.1E-06 45.5 17.1 181 15-244 9-205 (217)
48 PRK11320 prpB 2-methylisocitra 96.8 0.021 4.5E-07 54.0 12.1 138 78-276 8-147 (292)
49 TIGR03217 4OH_2_O_val_ald 4-hy 96.6 0.08 1.7E-06 50.9 15.1 188 28-243 22-221 (333)
50 TIGR01182 eda Entner-Doudoroff 96.6 0.5 1.1E-05 42.5 19.8 162 28-249 18-185 (204)
51 cd00452 KDPG_aldolase KDPG and 96.6 0.37 8.1E-06 42.2 18.3 157 28-244 14-175 (190)
52 PRK04165 acetyl-CoA decarbonyl 96.6 0.09 2E-06 52.6 15.8 208 5-249 79-305 (450)
53 cd04726 KGPDC_HPS 3-Keto-L-gul 96.6 0.43 9.4E-06 41.5 19.3 169 28-245 11-191 (202)
54 cd07943 DRE_TIM_HOA 4-hydroxy- 96.6 0.075 1.6E-06 49.0 14.3 185 28-243 20-218 (263)
55 cd04741 DHOD_1A_like Dihydroor 96.6 0.43 9.3E-06 44.9 19.5 219 10-270 5-292 (294)
56 cd04722 TIM_phosphate_binding 96.6 0.37 8E-06 40.5 17.6 168 32-239 14-198 (200)
57 PRK01033 imidazole glycerol ph 96.6 0.19 4E-06 46.4 16.7 178 31-245 31-233 (258)
58 TIGR00284 dihydropteroate synt 96.6 0.8 1.7E-05 46.5 22.3 218 16-272 151-375 (499)
59 PRK00278 trpC indole-3-glycero 96.5 0.23 5E-06 46.0 16.9 182 14-244 47-244 (260)
60 cd02911 arch_FMN Archeal FMN-b 96.5 0.12 2.5E-06 47.3 14.6 101 113-242 118-222 (233)
61 PRK01130 N-acetylmannosamine-6 96.5 0.39 8.6E-06 42.8 17.7 161 34-243 23-205 (221)
62 cd07939 DRE_TIM_NifV Streptomy 96.4 0.24 5.3E-06 45.5 16.5 175 28-243 18-215 (259)
63 PLN02591 tryptophan synthase 96.4 0.5 1.1E-05 43.8 18.2 188 17-243 6-221 (250)
64 TIGR01769 GGGP geranylgeranylg 96.3 0.3 6.4E-06 44.0 16.0 160 39-239 16-204 (205)
65 cd04729 NanE N-acetylmannosami 96.3 0.5 1.1E-05 42.2 17.6 116 99-243 84-209 (219)
66 cd00958 DhnA Class I fructose- 96.3 0.085 1.8E-06 47.5 12.4 112 41-161 83-211 (235)
67 PRK05437 isopentenyl pyrophosp 96.2 0.4 8.7E-06 46.4 17.5 235 2-282 49-330 (352)
68 PRK08195 4-hyroxy-2-oxovalerat 96.2 0.12 2.6E-06 49.8 13.6 185 28-243 23-222 (337)
69 PF01408 GFO_IDH_MocA: Oxidore 96.2 0.052 1.1E-06 43.1 9.4 76 78-159 38-115 (120)
70 TIGR00736 nifR3_rel_arch TIM-b 96.1 0.082 1.8E-06 48.4 11.5 104 112-241 112-221 (231)
71 cd07940 DRE_TIM_IPMS 2-isoprop 96.1 0.52 1.1E-05 43.5 16.8 176 28-244 18-223 (268)
72 TIGR00737 nifR3_yhdG putative 96.1 0.59 1.3E-05 44.3 17.5 109 113-245 109-227 (319)
73 TIGR00262 trpA tryptophan synt 96.0 1.2 2.7E-05 41.1 21.1 188 18-244 15-231 (256)
74 PRK10550 tRNA-dihydrouridine s 96.0 0.083 1.8E-06 50.3 11.5 112 112-246 108-230 (312)
75 PRK00278 trpC indole-3-glycero 96.0 0.091 2E-06 48.7 11.5 78 73-151 146-231 (260)
76 PRK09427 bifunctional indole-3 96.0 0.22 4.7E-06 50.0 14.9 150 73-268 145-305 (454)
77 PRK08318 dihydropyrimidine deh 96.0 1.7 3.6E-05 42.8 21.0 146 74-243 85-285 (420)
78 TIGR02317 prpB methylisocitrat 96.0 0.099 2.1E-06 49.3 11.6 137 78-276 4-142 (285)
79 TIGR01496 DHPS dihydropteroate 95.8 1.6 3.4E-05 40.5 19.0 156 28-194 21-201 (257)
80 PRK11858 aksA trans-homoaconit 95.8 0.91 2E-05 44.3 17.9 176 28-245 24-223 (378)
81 PRK05692 hydroxymethylglutaryl 95.8 0.58 1.2E-05 44.0 16.0 181 28-244 24-233 (287)
82 cd04723 HisA_HisF Phosphoribos 95.8 0.82 1.8E-05 41.5 16.4 170 31-243 36-221 (233)
83 PF03437 BtpA: BtpA family; I 95.8 1.7 3.7E-05 40.4 20.3 205 28-269 23-253 (254)
84 cd00564 TMP_TenI Thiamine mono 95.7 1.1 2.4E-05 38.1 18.4 134 74-243 43-181 (196)
85 PRK13957 indole-3-glycerol-pho 95.7 0.084 1.8E-06 48.8 9.8 77 73-150 137-221 (247)
86 PRK07535 methyltetrahydrofolat 95.7 1.8 3.9E-05 40.2 21.2 202 28-277 23-247 (261)
87 cd00405 PRAI Phosphoribosylant 95.7 0.76 1.7E-05 40.5 15.5 180 44-267 16-202 (203)
88 cd04724 Tryptophan_synthase_al 95.6 1.1 2.5E-05 40.8 16.8 188 17-243 4-218 (242)
89 cd00945 Aldolase_Class_I Class 95.6 0.21 4.7E-06 42.6 11.3 121 16-151 48-192 (201)
90 cd00423 Pterin_binding Pterin 95.6 1.1 2.3E-05 41.3 16.6 156 28-194 22-204 (258)
91 PF00218 IGPS: Indole-3-glycer 95.5 0.93 2E-05 42.1 15.9 192 3-243 33-241 (254)
92 cd00739 DHPS DHPS subgroup of 95.5 2.1 4.5E-05 39.7 19.1 156 28-194 22-203 (257)
93 TIGR03151 enACPred_II putative 95.5 1.7 3.6E-05 41.3 17.9 134 78-243 53-193 (307)
94 cd02811 IDI-2_FMN Isopentenyl- 95.5 2 4.2E-05 41.1 18.5 236 2-281 41-322 (326)
95 cd07937 DRE_TIM_PC_TC_5S Pyruv 95.4 0.62 1.3E-05 43.4 14.7 183 28-244 19-226 (275)
96 PRK13587 1-(5-phosphoribosyl)- 95.4 1 2.2E-05 41.0 15.6 171 33-242 34-223 (234)
97 PRK06552 keto-hydroxyglutarate 95.4 2 4.4E-05 38.7 21.8 175 6-244 5-187 (213)
98 cd00377 ICL_PEPM Members of th 95.3 0.23 4.9E-06 45.6 11.2 135 81-274 3-139 (243)
99 TIGR02319 CPEP_Pphonmut carbox 95.2 0.33 7.2E-06 46.0 12.0 137 78-276 7-146 (294)
100 cd04730 NPD_like 2-Nitropropan 95.2 2.2 4.7E-05 38.0 21.3 192 16-267 3-206 (236)
101 PRK01130 N-acetylmannosamine-6 95.2 0.21 4.5E-06 44.6 10.2 100 41-151 82-193 (221)
102 PF01207 Dus: Dihydrouridine s 95.1 0.1 2.3E-06 49.4 8.6 110 111-243 98-216 (309)
103 PRK06843 inosine 5-monophospha 95.1 0.47 1E-05 46.9 13.3 118 14-151 139-276 (404)
104 PRK10415 tRNA-dihydrouridine s 95.1 0.32 7E-06 46.4 11.9 108 112-243 110-227 (321)
105 cd00381 IMPDH IMPDH: The catal 95.1 1.2 2.6E-05 42.6 15.7 138 74-239 71-225 (325)
106 cd02812 PcrB_like PcrB_like pr 95.1 2 4.3E-05 39.1 16.2 164 38-244 16-208 (219)
107 TIGR02151 IPP_isom_2 isopenten 95.0 1.5 3.2E-05 42.1 16.2 237 2-284 42-325 (333)
108 PF04481 DUF561: Protein of un 94.9 3 6.4E-05 38.2 16.8 213 6-278 4-240 (242)
109 COG0673 MviM Predicted dehydro 94.9 0.2 4.4E-06 46.8 9.7 84 76-165 40-125 (342)
110 cd00331 IGPS Indole-3-glycerol 94.8 0.46 9.9E-06 42.2 11.5 85 74-163 108-200 (217)
111 PRK04161 tagatose 1,6-diphosph 94.8 0.36 7.9E-06 46.3 11.1 125 35-168 112-280 (329)
112 TIGR02320 PEP_mutase phosphoen 94.8 0.85 1.8E-05 43.0 13.6 85 79-163 1-111 (285)
113 TIGR02090 LEU1_arch isopropylm 94.8 2.2 4.7E-05 41.4 16.8 177 28-245 20-219 (363)
114 PRK14114 1-(5-phosphoribosyl)- 94.7 2.7 5.8E-05 38.6 16.5 182 31-264 31-239 (241)
115 COG1830 FbaB DhnA-type fructos 94.7 0.4 8.8E-06 44.7 11.0 85 74-159 130-232 (265)
116 PRK12858 tagatose 1,6-diphosph 94.7 0.4 8.6E-06 46.4 11.4 122 43-168 115-279 (340)
117 PLN02746 hydroxymethylglutaryl 94.7 2.5 5.5E-05 41.0 16.9 185 23-244 61-275 (347)
118 KOG2335 tRNA-dihydrouridine sy 94.7 0.43 9.3E-06 46.3 11.4 112 109-241 115-234 (358)
119 PRK13125 trpA tryptophan synth 94.6 3.2 7E-05 37.8 16.8 185 17-243 8-217 (244)
120 PRK04302 triosephosphate isome 94.6 3.2 6.9E-05 37.3 17.3 137 76-243 45-205 (223)
121 PRK08227 autoinducer 2 aldolas 94.6 0.46 9.9E-06 44.4 11.2 107 41-159 101-221 (264)
122 TIGR02321 Pphn_pyruv_hyd phosp 94.6 0.62 1.4E-05 44.0 12.1 137 77-275 5-145 (290)
123 cd07948 DRE_TIM_HCS Saccharomy 94.6 1.4 3E-05 40.9 14.3 177 28-243 20-217 (262)
124 COG0042 tRNA-dihydrouridine sy 94.5 0.28 6.1E-06 47.0 9.9 139 74-241 79-229 (323)
125 cd04737 LOX_like_FMN L-Lactate 94.5 0.78 1.7E-05 44.5 12.8 133 121-284 211-347 (351)
126 PRK14041 oxaloacetate decarbox 94.4 4.3 9.4E-05 41.0 18.4 182 28-245 23-231 (467)
127 PRK14040 oxaloacetate decarbox 94.4 2.2 4.8E-05 44.2 16.8 211 28-274 25-277 (593)
128 TIGR01305 GMP_reduct_1 guanosi 94.4 0.72 1.6E-05 44.6 12.3 162 31-241 57-242 (343)
129 TIGR02708 L_lactate_ox L-lacta 94.4 0.53 1.1E-05 46.0 11.5 132 121-283 218-353 (367)
130 COG0134 TrpC Indole-3-glycerol 94.4 0.14 3.1E-06 47.5 7.2 76 73-149 142-225 (254)
131 PLN02274 inosine-5'-monophosph 94.4 0.78 1.7E-05 46.6 13.1 119 13-151 233-371 (505)
132 PTZ00314 inosine-5'-monophosph 94.4 0.96 2.1E-05 45.8 13.8 118 14-151 227-364 (495)
133 PF04131 NanE: Putative N-acet 94.4 0.51 1.1E-05 42.1 10.3 111 32-163 53-172 (192)
134 TIGR00734 hisAF_rel hisA/hisF 94.4 3.2 6.9E-05 37.5 15.9 172 32-243 38-216 (221)
135 TIGR01859 fruc_bis_ald_ fructo 94.3 4.7 0.0001 37.9 18.1 179 32-242 25-232 (282)
136 TIGR01768 GGGP-family geranylg 94.3 2.9 6.3E-05 38.2 15.4 168 31-243 15-211 (223)
137 PRK14042 pyruvate carboxylase 94.3 2.1 4.6E-05 44.4 16.2 144 106-273 109-275 (596)
138 COG0134 TrpC Indole-3-glycerol 94.3 3.3 7.2E-05 38.6 15.9 190 6-243 34-239 (254)
139 cd04736 MDH_FMN Mandelate dehy 94.3 0.51 1.1E-05 46.0 11.1 131 121-282 226-358 (361)
140 TIGR02660 nifV_homocitr homoci 94.3 4.4 9.5E-05 39.3 17.6 176 28-244 21-219 (365)
141 TIGR00742 yjbN tRNA dihydrouri 94.3 0.66 1.4E-05 44.3 11.7 137 74-244 67-227 (318)
142 PF00218 IGPS: Indole-3-glycer 94.2 0.24 5.3E-06 46.0 8.4 76 73-149 144-227 (254)
143 PRK09282 pyruvate carboxylase 94.2 1.7 3.6E-05 45.1 15.3 182 28-245 24-232 (592)
144 cd02809 alpha_hydroxyacid_oxid 94.2 1.6 3.4E-05 41.1 14.0 133 119-282 160-296 (299)
145 TIGR01232 lacD tagatose 1,6-di 94.2 0.41 8.9E-06 45.9 9.9 125 35-168 111-279 (325)
146 PRK06739 pyruvate kinase; Vali 94.1 1.2 2.5E-05 43.4 13.2 131 37-187 168-323 (352)
147 cd07945 DRE_TIM_CMS Leptospira 94.1 4.3 9.3E-05 38.0 16.6 180 28-244 17-225 (280)
148 TIGR01302 IMP_dehydrog inosine 94.1 0.92 2E-05 45.3 12.8 105 30-151 223-347 (450)
149 PRK13111 trpA tryptophan synth 94.1 5 0.00011 37.3 19.4 210 18-270 17-254 (258)
150 PF00113 Enolase_C: Enolase, C 94.0 0.33 7.2E-06 46.0 9.1 95 73-168 136-238 (295)
151 cd07941 DRE_TIM_LeuA3 Desulfob 93.9 4.6 9.9E-05 37.5 16.4 99 121-244 123-229 (273)
152 cd07938 DRE_TIM_HMGL 3-hydroxy 93.9 2.4 5.2E-05 39.5 14.5 181 28-244 18-227 (274)
153 cd04727 pdxS PdxS is a subunit 93.8 3.4 7.3E-05 39.0 15.1 170 41-244 22-229 (283)
154 PRK07028 bifunctional hexulose 93.8 7.6 0.00017 38.3 19.3 179 16-244 4-194 (430)
155 PRK12399 tagatose 1,6-diphosph 93.7 0.86 1.9E-05 43.7 11.1 125 35-168 110-278 (324)
156 CHL00200 trpA tryptophan synth 93.6 6.2 0.00013 36.8 20.7 223 1-269 1-258 (263)
157 KOG2741 Dimeric dihydrodiol de 93.5 0.4 8.6E-06 46.4 8.6 86 75-166 42-129 (351)
158 COG0329 DapA Dihydrodipicolina 93.5 1.6 3.6E-05 41.2 12.8 104 14-149 71-176 (299)
159 PRK06801 hypothetical protein; 93.5 6.9 0.00015 37.0 18.8 178 32-239 27-232 (286)
160 cd04729 NanE N-acetylmannosami 93.5 0.98 2.1E-05 40.3 10.8 100 41-151 86-197 (219)
161 cd00288 Pyruvate_Kinase Pyruva 93.5 1.2 2.6E-05 45.0 12.5 128 39-186 179-330 (480)
162 TIGR00259 thylakoid_BtpA membr 93.4 6.7 0.00014 36.6 22.3 204 28-271 22-255 (257)
163 PRK09206 pyruvate kinase; Prov 93.4 1.3 2.8E-05 44.7 12.5 122 38-174 176-322 (470)
164 PRK15452 putative protease; Pr 93.3 0.62 1.4E-05 46.6 10.0 117 33-162 13-139 (443)
165 TIGR01306 GMP_reduct_2 guanosi 93.3 1.8 4E-05 41.5 12.8 187 2-243 23-230 (321)
166 PLN02826 dihydroorotate dehydr 93.3 9.5 0.0002 37.9 21.5 118 129-279 261-399 (409)
167 PF00682 HMGL-like: HMGL-like 93.2 2 4.4E-05 38.5 12.5 177 28-243 12-214 (237)
168 COG0352 ThiE Thiamine monophos 93.2 6.2 0.00013 35.7 18.4 180 14-244 5-190 (211)
169 COG0148 Eno Enolase [Carbohydr 93.2 1.2 2.5E-05 44.0 11.3 95 73-168 263-365 (423)
170 PTZ00300 pyruvate kinase; Prov 93.2 1.6 3.5E-05 43.9 12.6 120 40-174 153-296 (454)
171 PF02581 TMP-TENI: Thiamine mo 93.1 5.3 0.00011 34.5 16.2 149 17-194 1-154 (180)
172 PRK07226 fructose-bisphosphate 93.1 1.1 2.3E-05 41.5 10.7 108 43-159 102-226 (267)
173 PRK08649 inosine 5-monophospha 93.1 0.94 2E-05 44.2 10.7 110 30-151 141-276 (368)
174 TIGR00693 thiE thiamine-phosph 93.1 5.4 0.00012 34.5 18.1 178 16-244 1-184 (196)
175 PLN02762 pyruvate kinase compl 93.0 1.5 3.3E-05 44.7 12.4 121 39-174 208-354 (509)
176 PF00290 Trp_syntA: Tryptophan 93.0 7.5 0.00016 36.2 16.1 179 28-243 22-229 (259)
177 cd04728 ThiG Thiazole synthase 93.0 2 4.3E-05 39.9 12.0 132 5-151 52-195 (248)
178 cd02801 DUS_like_FMN Dihydrour 92.9 1.2 2.6E-05 39.5 10.5 106 114-243 102-216 (231)
179 PLN02623 pyruvate kinase 92.9 1.7 3.7E-05 44.9 12.7 125 40-186 284-434 (581)
180 cd02922 FCB2_FMN Flavocytochro 92.9 7.1 0.00015 37.8 16.3 130 122-283 204-341 (344)
181 PRK05458 guanosine 5'-monophos 92.8 4 8.8E-05 39.3 14.5 116 16-151 85-221 (326)
182 PRK06247 pyruvate kinase; Prov 92.8 1.2 2.7E-05 44.9 11.3 126 40-186 179-326 (476)
183 PLN02460 indole-3-glycerol-pho 92.7 0.97 2.1E-05 43.7 10.1 84 73-161 216-314 (338)
184 TIGR00343 pyridoxal 5'-phospha 92.7 5.8 0.00013 37.6 14.9 166 41-244 24-232 (287)
185 PRK09875 putative hydrolase; P 92.7 9.2 0.0002 36.2 18.8 77 109-195 122-209 (292)
186 TIGR01304 IMP_DH_rel_2 IMP deh 92.7 3.2 6.9E-05 40.6 13.7 133 79-241 125-285 (369)
187 PRK13802 bifunctional indole-3 92.5 9 0.00019 40.6 17.6 154 7-187 40-206 (695)
188 PF02126 PTE: Phosphotriestera 92.5 0.44 9.6E-06 45.4 7.4 79 109-197 126-215 (308)
189 PRK12581 oxaloacetate decarbox 92.5 5.3 0.00011 40.4 15.3 214 28-274 33-285 (468)
190 PTZ00066 pyruvate kinase; Prov 92.5 2.3 4.9E-05 43.4 12.7 126 41-186 217-366 (513)
191 PRK02615 thiamine-phosphate py 92.4 11 0.00024 36.6 18.9 177 13-244 145-326 (347)
192 cd06557 KPHMT-like Ketopantoat 92.3 1.2 2.6E-05 41.3 9.8 149 78-243 3-181 (254)
193 PRK13802 bifunctional indole-3 92.2 0.79 1.7E-05 48.4 9.5 78 73-151 146-231 (695)
194 TIGR01919 hisA-trpF 1-(5-phosp 92.2 5.7 0.00012 36.4 14.1 157 74-261 61-238 (243)
195 cd00945 Aldolase_Class_I Class 92.2 6.5 0.00014 33.3 16.4 92 121-239 101-200 (201)
196 PRK07315 fructose-bisphosphate 92.1 1.6 3.4E-05 41.3 10.6 76 75-150 118-222 (293)
197 cd03332 LMO_FMN L-Lactate 2-mo 92.0 1.7 3.8E-05 42.7 11.1 132 121-283 243-378 (383)
198 cd03174 DRE_TIM_metallolyase D 92.0 2.3 4.9E-05 38.4 11.2 124 119-272 53-188 (265)
199 PF00224 PK: Pyruvate kinase, 92.0 0.56 1.2E-05 45.3 7.5 134 34-187 176-333 (348)
200 PRK13753 dihydropteroate synth 92.0 11 0.00024 35.5 19.3 158 28-197 23-210 (279)
201 PRK00208 thiG thiazole synthas 91.9 3.4 7.4E-05 38.3 12.2 132 5-151 52-195 (250)
202 PRK00915 2-isopropylmalate syn 91.9 6 0.00013 40.3 15.1 126 121-271 56-190 (513)
203 TIGR03128 RuMP_HxlA 3-hexulose 91.8 8.3 0.00018 33.7 17.5 167 28-243 10-189 (206)
204 PRK05826 pyruvate kinase; Prov 91.7 2.6 5.6E-05 42.5 12.1 124 43-186 182-330 (465)
205 cd06556 ICL_KPHMT Members of t 91.6 1.1 2.4E-05 41.2 8.7 157 79-274 4-168 (240)
206 PTZ00081 enolase; Provisional 91.6 2.7 5.9E-05 42.0 12.1 94 73-167 284-385 (439)
207 TIGR01859 fruc_bis_ald_ fructo 91.5 0.76 1.6E-05 43.2 7.6 74 76-149 117-219 (282)
208 PLN02461 Probable pyruvate kin 91.4 3.6 7.7E-05 42.0 12.8 126 41-186 201-350 (511)
209 PRK06354 pyruvate kinase; Prov 91.4 2.1 4.6E-05 44.4 11.4 127 40-186 184-335 (590)
210 TIGR01304 IMP_DH_rel_2 IMP deh 91.4 2 4.3E-05 42.0 10.7 109 30-151 142-275 (369)
211 PLN02424 ketopantoate hydroxym 91.4 5.8 0.00013 38.3 13.5 151 76-242 24-204 (332)
212 PRK02083 imidazole glycerol ph 91.3 3.9 8.4E-05 37.3 12.0 78 106-192 166-251 (253)
213 PRK00311 panB 3-methyl-2-oxobu 91.3 4.7 0.0001 37.6 12.6 150 76-242 4-183 (264)
214 PRK00915 2-isopropylmalate syn 91.3 18 0.00038 36.9 17.7 100 121-244 124-230 (513)
215 PRK08185 hypothetical protein; 91.2 2.3 5.1E-05 40.1 10.6 104 110-276 13-122 (283)
216 PRK07114 keto-hydroxyglutarate 90.8 13 0.00027 34.0 22.1 185 6-249 7-197 (222)
217 PRK06015 keto-hydroxyglutarate 90.8 12 0.00026 33.6 20.0 129 28-193 14-148 (201)
218 PLN02495 oxidoreductase, actin 90.7 4.6 0.0001 39.7 12.5 95 72-168 97-218 (385)
219 PF01474 DAHP_synth_2: Class-I 90.5 1 2.3E-05 44.7 7.8 87 108-200 259-353 (439)
220 COG0191 Fba Fructose/tagatose 90.5 1.7 3.7E-05 41.1 8.9 86 109-243 17-109 (286)
221 TIGR01358 DAHP_synth_II 3-deox 90.4 1 2.2E-05 44.8 7.7 91 107-200 255-350 (443)
222 PLN02291 phospho-2-dehydro-3-d 90.4 0.91 2E-05 45.5 7.2 91 107-200 275-370 (474)
223 PLN03228 methylthioalkylmalate 90.2 4 8.6E-05 41.6 11.9 114 132-271 157-280 (503)
224 cd04739 DHOD_like Dihydroorota 90.2 5.2 0.00011 38.2 12.2 94 128-242 97-197 (325)
225 cd00950 DHDPS Dihydrodipicolin 90.1 6.3 0.00014 36.4 12.4 64 14-91 67-130 (284)
226 PF13714 PEP_mutase: Phosphoen 90.1 1.7 3.8E-05 39.8 8.5 67 188-277 68-135 (238)
227 PRK12330 oxaloacetate decarbox 90.1 24 0.00052 36.0 18.3 182 28-245 25-235 (499)
228 TIGR01108 oadA oxaloacetate de 90.0 7.4 0.00016 40.3 13.9 210 28-273 19-270 (582)
229 TIGR01036 pyrD_sub2 dihydrooro 90.0 8 0.00017 37.2 13.3 37 131-167 211-247 (335)
230 TIGR03249 KdgD 5-dehydro-4-deo 90.0 2.2 4.8E-05 40.0 9.3 92 14-120 72-171 (296)
231 TIGR00674 dapA dihydrodipicoli 89.9 2.1 4.6E-05 39.8 9.1 111 14-140 65-185 (285)
232 PF04131 NanE: Putative N-acet 89.9 7.5 0.00016 34.8 12.0 114 100-243 57-176 (192)
233 PRK06852 aldolase; Validated 89.9 3.2 6.9E-05 39.6 10.3 104 48-158 135-259 (304)
234 TIGR00381 cdhD CO dehydrogenas 89.8 9.9 0.00021 37.5 13.8 185 44-243 150-360 (389)
235 PRK04180 pyridoxal biosynthesi 89.8 3.9 8.5E-05 38.8 10.7 174 41-244 31-238 (293)
236 PRK12331 oxaloacetate decarbox 89.7 17 0.00037 36.5 15.8 182 28-245 24-232 (448)
237 PF00977 His_biosynth: Histidi 89.6 1.6 3.4E-05 39.6 7.7 171 32-242 31-222 (229)
238 cd04740 DHOD_1B_like Dihydroor 89.6 1.5 3.3E-05 40.8 7.9 55 74-128 218-275 (296)
239 COG0800 Eda 2-keto-3-deoxy-6-p 89.3 4.7 0.0001 36.5 10.4 100 27-151 22-124 (211)
240 cd00954 NAL N-Acetylneuraminic 89.3 3 6.5E-05 38.9 9.6 65 14-92 68-133 (288)
241 PRK05567 inosine 5'-monophosph 89.2 7.8 0.00017 39.1 13.1 104 31-151 228-351 (486)
242 PLN02229 alpha-galactosidase 89.1 2.9 6.3E-05 41.7 9.7 118 28-146 78-225 (427)
243 cd00381 IMPDH IMPDH: The catal 89.0 9.4 0.0002 36.5 13.0 124 15-162 81-224 (325)
244 PRK06512 thiamine-phosphate py 89.0 17 0.00037 32.8 18.1 181 15-244 13-196 (221)
245 COG3010 NanE Putative N-acetyl 89.0 5.3 0.00011 36.3 10.3 74 75-151 115-200 (229)
246 PRK09389 (R)-citramalate synth 88.9 9.9 0.00021 38.5 13.6 98 123-244 120-220 (488)
247 PRK11815 tRNA-dihydrouridine s 88.9 5.6 0.00012 38.1 11.4 140 74-247 77-240 (333)
248 cd07939 DRE_TIM_NifV Streptomy 88.9 19 0.0004 33.0 14.7 150 74-271 20-180 (259)
249 cd02809 alpha_hydroxyacid_oxid 88.8 19 0.00042 33.7 14.8 121 75-243 82-203 (299)
250 PLN02765 pyruvate kinase 88.7 5.9 0.00013 40.6 11.8 118 41-174 214-356 (526)
251 PRK10550 tRNA-dihydrouridine s 88.7 3.3 7.2E-05 39.4 9.6 117 14-150 133-253 (312)
252 PTZ00314 inosine-5'-monophosph 88.6 2.1 4.5E-05 43.5 8.5 117 97-245 243-378 (495)
253 PRK07565 dihydroorotate dehydr 88.6 2.9 6.3E-05 39.9 9.2 91 128-239 99-196 (334)
254 PRK03170 dihydrodipicolinate s 88.5 9.9 0.00021 35.4 12.5 93 14-120 68-170 (292)
255 PRK03620 5-dehydro-4-deoxygluc 88.5 3.5 7.7E-05 38.8 9.6 64 14-92 74-137 (303)
256 PRK07259 dihydroorotate dehydr 88.4 2.4 5.3E-05 39.6 8.4 91 128-239 89-188 (301)
257 cd00408 DHDPS-like Dihydrodipi 88.4 3.5 7.6E-05 38.0 9.4 93 14-120 64-166 (281)
258 PRK08999 hypothetical protein; 88.4 22 0.00047 33.2 18.5 153 15-194 130-285 (312)
259 PRK04147 N-acetylneuraminate l 88.2 13 0.00028 34.8 13.1 65 14-92 71-135 (293)
260 PRK13209 L-xylulose 5-phosphat 88.2 11 0.00024 34.4 12.5 47 122-168 143-189 (283)
261 KOG0538 Glycolate oxidase [Ene 88.1 3.8 8.3E-05 39.3 9.3 99 118-248 213-315 (363)
262 PF00478 IMPDH: IMP dehydrogen 88.0 8.7 0.00019 37.4 12.0 127 13-163 93-239 (352)
263 COG0167 PyrD Dihydroorotate de 88.0 26 0.00056 33.6 17.7 92 73-166 79-195 (310)
264 PLN02495 oxidoreductase, actin 87.9 6.8 0.00015 38.6 11.4 90 130-240 113-214 (385)
265 COG3010 NanE Putative N-acetyl 87.9 21 0.00046 32.5 14.8 162 34-244 33-213 (229)
266 PLN02692 alpha-galactosidase 87.9 2 4.3E-05 42.7 7.6 110 28-137 71-208 (412)
267 PRK04169 geranylgeranylglycery 87.7 22 0.00048 32.6 15.7 161 43-244 28-217 (232)
268 PF02879 PGM_PMM_II: Phosphogl 87.5 1.1 2.4E-05 35.1 4.7 67 183-272 15-83 (104)
269 COG0159 TrpA Tryptophan syntha 87.5 25 0.00055 33.0 21.5 228 5-270 5-261 (265)
270 PRK07107 inosine 5-monophospha 87.4 9.1 0.0002 39.0 12.3 118 13-151 228-372 (502)
271 COG0119 LeuA Isopropylmalate/h 87.3 25 0.00054 35.0 15.0 179 28-244 22-225 (409)
272 PRK07998 gatY putative fructos 87.3 27 0.00058 33.0 17.8 176 32-237 27-226 (283)
273 PF00682 HMGL-like: HMGL-like 87.3 2.8 6E-05 37.6 7.7 107 141-272 64-179 (237)
274 COG0826 Collagenase and relate 87.2 8.6 0.00019 37.3 11.5 144 16-187 6-157 (347)
275 cd07940 DRE_TIM_IPMS 2-isoprop 87.1 16 0.00036 33.5 13.0 154 74-271 20-184 (268)
276 TIGR00167 cbbA ketose-bisphosp 87.1 6.3 0.00014 37.3 10.3 113 23-151 79-227 (288)
277 PRK13307 bifunctional formalde 87.0 32 0.00068 34.1 15.4 181 15-244 171-362 (391)
278 TIGR02660 nifV_homocitr homoci 87.0 23 0.00049 34.3 14.4 122 120-270 52-182 (365)
279 cd03332 LMO_FMN L-Lactate 2-mo 86.8 13 0.00028 36.6 12.6 31 119-149 104-134 (383)
280 PRK07807 inosine 5-monophospha 86.8 7.8 0.00017 39.2 11.3 105 30-151 226-350 (479)
281 PF01791 DeoC: DeoC/LacD famil 86.7 0.87 1.9E-05 41.1 4.2 102 43-151 85-212 (236)
282 TIGR01949 AroFGH_arch predicte 86.7 10 0.00022 34.8 11.2 108 43-159 99-222 (258)
283 TIGR02313 HpaI-NOT-DapA 2,4-di 86.7 5 0.00011 37.7 9.4 111 14-140 67-189 (294)
284 PRK09195 gatY tagatose-bisphos 86.6 6.9 0.00015 37.0 10.2 76 76-151 117-223 (284)
285 PRK05458 guanosine 5'-monophos 86.6 32 0.00068 33.2 15.1 188 2-244 26-234 (326)
286 PRK02227 hypothetical protein; 86.5 9.7 0.00021 35.1 10.8 158 90-272 3-180 (238)
287 TIGR01163 rpe ribulose-phospha 86.5 21 0.00045 31.0 17.5 175 28-244 9-197 (210)
288 COG3623 SgaU Putative L-xylulo 86.4 20 0.00044 33.3 12.7 118 29-169 91-214 (287)
289 PF12683 DUF3798: Protein of u 86.4 2.1 4.5E-05 40.2 6.4 128 5-151 76-221 (275)
290 PRK05718 keto-hydroxyglutarate 86.3 25 0.00054 31.7 19.7 129 28-193 25-159 (212)
291 PRK15447 putative protease; Pr 86.2 11 0.00023 35.7 11.4 121 45-186 26-150 (301)
292 TIGR00222 panB 3-methyl-2-oxob 86.2 11 0.00024 35.3 11.2 108 76-193 4-133 (263)
293 TIGR02320 PEP_mutase phosphoen 86.1 4.9 0.00011 37.9 9.0 67 188-271 77-147 (285)
294 PLN02321 2-isopropylmalate syn 86.1 15 0.00032 38.6 13.2 113 132-270 158-280 (632)
295 PF09370 TIM-br_sig_trns: TIM- 86.0 6.2 0.00014 37.0 9.4 128 15-167 80-222 (268)
296 TIGR00973 leuA_bact 2-isopropy 86.0 16 0.00035 37.0 13.2 125 121-271 53-187 (494)
297 PRK15063 isocitrate lyase; Pro 86.0 19 0.0004 36.1 13.2 167 73-277 49-220 (428)
298 PRK12344 putative alpha-isopro 86.0 44 0.00095 34.2 17.3 100 122-245 131-236 (524)
299 PRK10415 tRNA-dihydrouridine s 86.0 4.7 0.0001 38.4 8.9 88 29-128 148-239 (321)
300 PRK13210 putative L-xylulose 5 86.0 17 0.00037 33.0 12.3 47 122-168 138-184 (284)
301 COG0107 HisF Imidazoleglycerol 85.8 30 0.00065 32.1 15.3 142 32-194 32-204 (256)
302 PRK06806 fructose-bisphosphate 85.7 32 0.00069 32.4 18.8 178 32-242 27-232 (281)
303 PLN02808 alpha-galactosidase 85.6 3 6.5E-05 41.1 7.5 119 28-147 47-196 (386)
304 PRK06801 hypothetical protein; 85.5 32 0.00069 32.5 14.1 84 107-239 15-103 (286)
305 TIGR01302 IMP_dehydrog inosine 85.5 4.8 0.0001 40.2 9.1 116 97-244 226-360 (450)
306 TIGR02090 LEU1_arch isopropylm 85.3 25 0.00055 34.1 13.7 149 74-270 22-181 (363)
307 cd00951 KDGDH 5-dehydro-4-deox 85.2 8.2 0.00018 36.1 10.0 64 14-92 67-130 (289)
308 PLN02493 probable peroxisomal 85.1 17 0.00038 35.5 12.4 29 121-149 91-119 (367)
309 PRK09875 putative hydrolase; P 85.0 7.4 0.00016 36.8 9.6 104 73-194 34-157 (292)
310 TIGR00683 nanA N-acetylneurami 84.9 23 0.0005 33.1 12.9 64 14-91 68-132 (290)
311 TIGR02708 L_lactate_ox L-lacta 84.9 16 0.00035 35.8 12.1 101 120-243 100-259 (367)
312 PRK07094 biotin synthase; Prov 84.9 34 0.00074 32.1 19.7 205 28-266 71-309 (323)
313 PRK02506 dihydroorotate dehydr 84.9 36 0.00078 32.3 16.5 139 10-157 8-184 (310)
314 PRK06843 inosine 5-monophospha 84.8 6 0.00013 39.2 9.2 121 97-245 155-290 (404)
315 cd07948 DRE_TIM_HCS Saccharomy 84.8 15 0.00032 34.1 11.4 102 141-271 72-182 (262)
316 PF01053 Cys_Met_Meta_PP: Cys/ 84.8 2.7 5.9E-05 41.2 6.8 71 120-199 108-181 (386)
317 TIGR01064 pyruv_kin pyruvate k 84.7 8.7 0.00019 38.8 10.5 124 43-186 180-328 (473)
318 cd04732 HisA HisA. Phosphorib 84.7 25 0.00053 31.2 12.5 52 107-163 160-218 (234)
319 TIGR03151 enACPred_II putative 84.6 11 0.00024 35.7 10.7 72 79-151 101-181 (307)
320 TIGR01037 pyrD_sub1_fam dihydr 84.5 3.2 7E-05 38.7 7.0 133 8-147 149-296 (300)
321 PRK07998 gatY putative fructos 84.3 30 0.00066 32.7 13.4 84 107-239 15-103 (283)
322 PRK13399 fructose-1,6-bisphosp 84.3 38 0.00082 33.0 14.3 112 107-273 15-133 (347)
323 PRK04452 acetyl-CoA decarbonyl 84.3 38 0.00082 32.6 14.1 156 5-169 33-213 (319)
324 PRK11320 prpB 2-methylisocitra 84.3 12 0.00027 35.4 10.7 83 14-117 148-238 (292)
325 TIGR00977 LeuA_rel 2-isopropyl 84.1 54 0.0012 33.7 16.7 98 123-244 128-232 (526)
326 PLN02460 indole-3-glycerol-pho 84.1 43 0.00093 32.5 15.7 147 15-187 117-277 (338)
327 COG2513 PrpB PEP phosphonomuta 84.0 5.7 0.00012 37.6 8.3 72 188-277 77-148 (289)
328 PRK00694 4-hydroxy-3-methylbut 84.0 48 0.001 34.5 15.3 137 11-168 25-211 (606)
329 PRK08610 fructose-bisphosphate 83.9 10 0.00022 35.9 10.0 113 23-151 79-224 (286)
330 PRK09250 fructose-bisphosphate 83.9 20 0.00043 35.0 12.1 64 75-149 180-248 (348)
331 cd04730 NPD_like 2-Nitropropan 83.8 19 0.00042 31.9 11.5 81 78-163 93-184 (236)
332 cd00952 CHBPH_aldolase Trans-o 83.8 11 0.00024 35.6 10.3 93 14-121 75-178 (309)
333 PRK07709 fructose-bisphosphate 83.8 11 0.00025 35.5 10.3 76 76-151 120-224 (285)
334 COG1456 CdhE CO dehydrogenase/ 83.7 27 0.00059 34.3 12.8 130 28-169 108-241 (467)
335 COG5016 Pyruvate/oxaloacetate 83.7 51 0.0011 33.0 16.8 160 74-275 98-279 (472)
336 PLN02274 inosine-5'-monophosph 83.6 12 0.00025 38.2 10.9 123 94-245 247-385 (505)
337 TIGR03470 HpnH hopanoid biosyn 83.6 34 0.00074 32.4 13.6 131 121-271 91-228 (318)
338 COG1411 Uncharacterized protei 83.5 35 0.00075 31.0 12.9 170 31-243 37-213 (229)
339 PTZ00378 hypothetical protein; 83.4 24 0.00052 36.1 12.9 94 73-167 329-436 (518)
340 PF00448 SRP54: SRP54-type pro 83.4 22 0.00047 31.4 11.4 152 17-194 3-172 (196)
341 TIGR01060 eno phosphopyruvate 83.3 44 0.00095 33.2 14.7 93 73-166 265-365 (425)
342 cd02810 DHOD_DHPD_FMN Dihydroo 83.2 6.6 0.00014 36.3 8.4 117 7-127 153-287 (289)
343 PRK11858 aksA trans-homoaconit 83.2 47 0.001 32.4 14.7 121 121-271 56-186 (378)
344 PRK05567 inosine 5'-monophosph 83.2 7.6 0.00017 39.1 9.4 117 96-244 229-364 (486)
345 TIGR02151 IPP_isom_2 isopenten 83.0 29 0.00063 33.2 12.9 77 74-151 166-274 (333)
346 PLN02334 ribulose-phosphate 3- 82.9 35 0.00076 30.6 13.0 140 74-244 55-206 (229)
347 TIGR00735 hisF imidazoleglycer 82.9 29 0.00063 31.7 12.4 66 118-192 186-253 (254)
348 PRK06552 keto-hydroxyglutarate 82.8 8.4 0.00018 34.7 8.6 107 19-158 68-177 (213)
349 PRK07455 keto-hydroxyglutarate 82.7 33 0.00071 30.1 17.8 158 28-244 22-184 (187)
350 TIGR01303 IMP_DH_rel_1 IMP deh 82.4 12 0.00027 37.7 10.6 117 99-243 229-360 (475)
351 cd02801 DUS_like_FMN Dihydrour 82.3 30 0.00065 30.5 12.0 131 78-242 14-158 (231)
352 PLN02858 fructose-bisphosphate 82.3 28 0.00061 39.8 14.3 128 87-240 1071-1199(1378)
353 cd04726 KGPDC_HPS 3-Keto-L-gul 82.2 20 0.00043 31.0 10.6 92 41-148 71-174 (202)
354 TIGR00433 bioB biotin syntheta 82.2 41 0.00089 30.9 14.4 83 74-158 98-201 (296)
355 COG0167 PyrD Dihydroorotate de 82.1 5.5 0.00012 38.1 7.5 134 7-148 152-305 (310)
356 PLN02617 imidazole glycerol ph 81.9 67 0.0014 33.1 19.8 88 32-129 269-382 (538)
357 TIGR02082 metH 5-methyltetrahy 81.7 94 0.002 35.2 17.8 203 13-239 339-584 (1178)
358 TIGR00542 hxl6Piso_put hexulos 81.6 6.9 0.00015 35.9 7.8 65 29-96 89-155 (279)
359 TIGR03128 RuMP_HxlA 3-hexulose 81.6 26 0.00056 30.5 11.2 101 43-162 72-184 (206)
360 COG1646 Predicted phosphate-bi 81.5 32 0.00069 31.8 11.8 142 34-194 28-196 (240)
361 PF01116 F_bP_aldolase: Fructo 81.4 6.8 0.00015 37.0 7.8 83 109-240 16-103 (287)
362 PLN02979 glycolate oxidase 81.4 30 0.00065 33.9 12.4 29 121-149 90-118 (366)
363 cd02803 OYE_like_FMN_family Ol 81.3 22 0.00047 33.4 11.3 100 121-243 196-314 (327)
364 COG2022 ThiG Uncharacterized e 81.2 7.7 0.00017 35.9 7.7 96 118-243 115-214 (262)
365 KOG0053 Cystathionine beta-lya 81.1 5.9 0.00013 39.3 7.5 91 158-277 162-256 (409)
366 PRK09250 fructose-bisphosphate 81.1 50 0.0011 32.2 13.6 131 23-158 169-312 (348)
367 PRK07114 keto-hydroxyglutarate 81.0 13 0.00028 33.8 9.2 96 18-140 70-168 (222)
368 PRK13586 1-(5-phosphoribosyl)- 81.0 44 0.00095 30.4 16.5 173 32-243 32-221 (232)
369 PRK10206 putative oxidoreducta 81.0 3.8 8.2E-05 39.2 6.1 52 106-157 64-115 (344)
370 COG1735 Php Predicted metal-de 80.7 46 0.001 32.0 13.0 65 122-195 153-223 (316)
371 TIGR01306 GMP_reduct_2 guanosi 80.6 55 0.0012 31.5 13.7 131 8-163 75-226 (321)
372 PRK14725 pyruvate kinase; Prov 80.5 23 0.00049 37.0 11.7 102 73-186 456-587 (608)
373 TIGR01521 FruBisAldo_II_B fruc 80.5 59 0.0013 31.7 14.4 113 107-274 13-132 (347)
374 PRK04128 1-(5-phosphoribosyl)- 80.3 45 0.00098 30.2 13.3 61 74-136 60-124 (228)
375 PRK11579 putative oxidoreducta 80.3 6.2 0.00014 37.5 7.3 54 103-156 60-114 (346)
376 PF03060 NMO: Nitronate monoox 80.3 29 0.00062 33.1 11.8 146 79-267 91-240 (330)
377 TIGR03572 WbuZ glycosyl amidat 80.2 34 0.00074 30.5 11.7 53 107-163 167-226 (232)
378 PF03599 CdhD: CO dehydrogenas 80.2 9.6 0.00021 37.6 8.6 151 5-169 17-180 (386)
379 PRK12738 kbaY tagatose-bisphos 80.2 41 0.00088 31.9 12.5 85 107-240 15-104 (286)
380 PRK06498 isocitrate lyase; Pro 80.1 7.8 0.00017 39.4 8.0 73 190-278 179-253 (531)
381 cd00452 KDPG_aldolase KDPG and 80.1 22 0.00047 31.0 10.1 70 77-148 87-159 (190)
382 TIGR00977 LeuA_rel 2-isopropyl 80.0 15 0.00032 37.7 10.2 105 145-271 82-195 (526)
383 PRK08883 ribulose-phosphate 3- 79.9 46 0.001 30.0 15.3 108 106-243 81-198 (220)
384 PRK02048 4-hydroxy-3-methylbut 79.9 78 0.0017 33.2 15.2 137 11-168 21-207 (611)
385 PRK08392 hypothetical protein; 79.8 43 0.00094 29.7 13.2 147 37-199 17-185 (215)
386 PLN02979 glycolate oxidase 79.6 25 0.00055 34.5 11.2 44 76-119 212-257 (366)
387 PRK13523 NADPH dehydrogenase N 79.1 62 0.0014 31.1 15.8 78 141-243 224-308 (337)
388 cd04731 HisF The cyclase subun 79.1 30 0.00066 31.1 11.1 45 106-151 162-213 (243)
389 PRK01261 aroD 3-dehydroquinate 79.1 51 0.0011 30.1 14.0 201 11-268 16-226 (229)
390 TIGR00973 leuA_bact 2-isopropy 78.9 79 0.0017 32.1 17.1 99 122-244 122-227 (494)
391 TIGR00007 phosphoribosylformim 78.8 35 0.00077 30.3 11.3 41 118-163 176-217 (230)
392 cd00959 DeoC 2-deoxyribose-5-p 78.7 8.6 0.00019 34.0 7.2 102 41-149 76-192 (203)
393 PLN02925 4-hydroxy-3-methylbut 78.6 74 0.0016 34.0 14.8 124 28-168 108-276 (733)
394 TIGR01235 pyruv_carbox pyruvat 78.6 77 0.0017 35.7 15.9 130 74-244 625-766 (1143)
395 cd00953 KDG_aldolase KDG (2-ke 78.5 15 0.00033 34.1 9.1 86 19-120 68-165 (279)
396 cd03465 URO-D_like The URO-D _ 78.4 31 0.00067 32.2 11.3 116 45-169 179-313 (330)
397 PF05690 ThiG: Thiazole biosyn 78.3 11 0.00023 35.0 7.7 67 149-239 136-203 (247)
398 PLN03231 putative alpha-galact 78.3 12 0.00027 36.5 8.7 68 24-92 13-104 (357)
399 COG3684 LacD Tagatose-1,6-bisp 78.3 19 0.0004 34.0 9.3 119 35-168 116-266 (306)
400 COG1456 CdhE CO dehydrogenase/ 78.2 36 0.00079 33.5 11.6 91 122-245 151-242 (467)
401 PLN02321 2-isopropylmalate syn 78.1 96 0.0021 32.7 16.0 97 124-244 217-321 (632)
402 TIGR00284 dihydropteroate synt 78.0 19 0.00042 36.7 10.3 67 142-235 163-230 (499)
403 PRK10014 DNA-binding transcrip 77.9 55 0.0012 30.1 12.8 92 74-165 81-189 (342)
404 PF00701 DHDPS: Dihydrodipicol 77.9 22 0.00049 32.9 10.1 65 14-92 68-132 (289)
405 TIGR01303 IMP_DH_rel_1 IMP deh 77.8 28 0.00061 35.2 11.4 105 30-151 224-348 (475)
406 PLN00191 enolase 77.6 19 0.0004 36.4 9.9 84 73-157 298-388 (457)
407 TIGR01496 DHPS dihydropteroate 77.5 18 0.00038 33.5 9.1 75 141-241 20-101 (257)
408 PF04476 DUF556: Protein of un 77.5 37 0.00081 31.3 11.0 157 88-270 1-178 (235)
409 cd02940 DHPD_FMN Dihydropyrimi 77.2 18 0.00038 34.0 9.2 113 7-125 159-294 (299)
410 TIGR00737 nifR3_yhdG putative 77.0 9 0.0002 36.2 7.3 85 32-128 149-237 (319)
411 COG0399 WecE Predicted pyridox 77.0 42 0.0009 33.0 12.0 153 81-270 42-210 (374)
412 PRK09389 (R)-citramalate synth 76.9 65 0.0014 32.7 13.7 122 120-271 53-184 (488)
413 cd03313 enolase Enolase: Enola 76.8 22 0.00048 35.1 10.1 94 73-167 264-365 (408)
414 PF10566 Glyco_hydro_97: Glyco 76.7 32 0.00069 32.4 10.6 68 31-98 29-97 (273)
415 PRK13210 putative L-xylulose 5 76.7 4.2 9.1E-05 37.0 4.8 67 29-97 89-156 (284)
416 cd01994 Alpha_ANH_like_IV This 76.7 16 0.00036 32.2 8.4 61 78-139 80-147 (194)
417 PRK11197 lldD L-lactate dehydr 76.6 25 0.00054 34.7 10.3 130 123-283 237-370 (381)
418 cd00429 RPE Ribulose-5-phospha 76.5 49 0.0011 28.5 16.8 176 28-244 10-198 (211)
419 cd07941 DRE_TIM_LeuA3 Desulfob 76.5 38 0.00082 31.4 11.1 99 150-270 84-191 (273)
420 cd02930 DCR_FMN 2,4-dienoyl-Co 76.3 9.9 0.00022 36.5 7.4 94 28-127 222-320 (353)
421 PLN02535 glycolate oxidase 76.3 43 0.00093 32.8 11.8 100 120-242 92-253 (364)
422 PRK05096 guanosine 5'-monophos 76.3 26 0.00057 34.0 10.1 163 33-239 60-241 (346)
423 PRK05437 isopentenyl pyrophosp 76.2 35 0.00076 33.0 11.2 77 74-151 173-281 (352)
424 PRK06702 O-acetylhomoserine am 76.1 15 0.00032 36.7 8.7 65 126-199 121-187 (432)
425 PRK12999 pyruvate carboxylase; 76.1 43 0.00093 37.7 13.1 109 141-273 688-812 (1146)
426 PRK09856 fructoselysine 3-epim 75.9 26 0.00056 31.8 9.8 65 30-97 86-152 (275)
427 cd02803 OYE_like_FMN_family Ol 75.9 18 0.00039 34.0 8.9 95 28-127 226-325 (327)
428 PLN03228 methylthioalkylmalate 75.8 99 0.0021 31.7 16.6 99 122-244 214-320 (503)
429 cd02811 IDI-2_FMN Isopentenyl- 75.7 32 0.0007 32.8 10.7 77 74-151 165-275 (326)
430 PRK09196 fructose-1,6-bisphosp 75.6 83 0.0018 30.7 14.3 114 107-275 15-135 (347)
431 PLN02617 imidazole glycerol ph 75.6 26 0.00057 36.0 10.5 67 118-192 469-536 (538)
432 PRK08195 4-hyroxy-2-oxovalerat 75.6 79 0.0017 30.4 13.6 157 73-271 24-185 (337)
433 PRK08318 dihydropyrimidine deh 75.6 8 0.00017 38.0 6.7 74 74-148 237-317 (420)
434 PRK01033 imidazole glycerol ph 75.4 38 0.00082 31.1 10.8 33 118-151 183-216 (258)
435 TIGR00262 trpA tryptophan synt 74.8 32 0.00068 31.8 10.0 75 74-149 127-216 (256)
436 TIGR01305 GMP_reduct_1 guanosi 74.7 38 0.00082 33.0 10.7 115 30-163 106-240 (343)
437 PRK13209 L-xylulose 5-phosphat 74.7 4.2 9.2E-05 37.2 4.3 66 29-97 94-161 (283)
438 PF04551 GcpE: GcpE protein; 74.6 90 0.0019 30.6 14.2 163 11-199 11-211 (359)
439 TIGR02317 prpB methylisocitrat 74.6 42 0.00091 31.7 10.9 83 14-117 143-233 (285)
440 PRK00077 eno enolase; Provisio 74.5 25 0.00054 34.9 9.9 93 74-167 265-365 (425)
441 PRK00748 1-(5-phosphoribosyl)- 74.4 41 0.00089 29.8 10.5 44 118-166 177-221 (233)
442 PRK09195 gatY tagatose-bisphos 74.3 67 0.0015 30.3 12.2 85 107-240 15-104 (284)
443 PF01208 URO-D: Uroporphyrinog 74.2 27 0.00058 32.9 9.7 113 38-155 186-307 (343)
444 PRK12344 putative alpha-isopro 74.1 73 0.0016 32.6 13.3 102 148-271 89-199 (524)
445 PRK07315 fructose-bisphosphate 73.7 82 0.0018 29.8 18.5 178 32-243 27-235 (293)
446 cd04722 TIM_phosphate_binding 73.5 51 0.0011 27.2 12.8 76 75-151 101-190 (200)
447 cd08148 RuBisCO_large Ribulose 73.3 83 0.0018 30.9 12.9 175 66-270 107-309 (366)
448 PF00809 Pterin_bind: Pterin b 73.3 37 0.00079 30.2 9.8 154 30-194 19-201 (210)
449 COG0191 Fba Fructose/tagatose 73.2 86 0.0019 29.8 17.1 175 32-235 27-229 (286)
450 PRK12738 kbaY tagatose-bisphos 73.1 85 0.0019 29.7 17.7 156 32-199 27-209 (286)
451 PRK07226 fructose-bisphosphate 73.1 77 0.0017 29.2 15.7 85 126-240 135-231 (267)
452 cd02922 FCB2_FMN Flavocytochro 72.9 85 0.0019 30.4 12.9 30 120-149 84-113 (344)
453 COG0119 LeuA Isopropylmalate/h 72.9 52 0.0011 32.7 11.6 139 107-271 38-187 (409)
454 TIGR01346 isocit_lyase isocitr 72.4 21 0.00045 36.7 8.7 173 76-277 48-224 (527)
455 PRK06015 keto-hydroxyglutarate 72.3 20 0.00044 32.1 7.9 107 19-158 56-166 (201)
456 PRK08649 inosine 5-monophospha 72.2 35 0.00076 33.4 10.1 95 121-243 122-218 (368)
457 PRK12290 thiE thiamine-phospha 72.1 1.1E+02 0.0025 30.7 14.5 134 73-244 247-396 (437)
458 CHL00162 thiG thiamin biosynth 71.9 61 0.0013 30.4 11.0 97 118-244 122-222 (267)
459 TIGR03217 4OH_2_O_val_ald 4-hy 71.8 98 0.0021 29.8 13.7 155 73-271 23-184 (333)
460 cd07943 DRE_TIM_HOA 4-hydroxy- 71.8 81 0.0018 28.8 12.3 158 73-271 21-182 (263)
461 COG1038 PycA Pyruvate carboxyl 71.7 25 0.00054 38.1 9.3 99 36-151 69-188 (1149)
462 COG0469 PykF Pyruvate kinase [ 71.7 63 0.0014 32.9 11.9 130 38-187 179-333 (477)
463 PF01070 FMN_dh: FMN-dependent 71.6 22 0.00047 34.6 8.5 100 115-243 210-312 (356)
464 TIGR01858 tag_bisphos_ald clas 71.6 92 0.002 29.4 17.1 173 33-235 26-225 (282)
465 PF01081 Aldolase: KDPG and KH 71.6 75 0.0016 28.4 12.4 158 33-245 19-181 (196)
466 cd04733 OYE_like_2_FMN Old yel 71.5 56 0.0012 31.1 11.2 91 130-243 216-325 (338)
467 PRK11815 tRNA-dihydrouridine s 71.5 97 0.0021 29.6 14.4 141 13-168 62-236 (333)
468 TIGR00742 yjbN tRNA dihydrouri 71.3 30 0.00066 33.0 9.3 87 37-128 144-238 (318)
469 cd04728 ThiG Thiazole synthase 71.1 66 0.0014 29.9 11.0 118 118-275 108-231 (248)
470 PRK09140 2-dehydro-3-deoxy-6-p 71.1 77 0.0017 28.3 11.5 79 78-163 95-178 (206)
471 PLN02433 uroporphyrinogen deca 71.0 87 0.0019 29.9 12.5 138 41-191 186-340 (345)
472 COG1419 FlhF Flagellar GTP-bin 70.9 1.2E+02 0.0025 30.3 15.0 113 74-198 247-373 (407)
473 cd08205 RuBisCO_IV_RLP Ribulos 70.9 1.1E+02 0.0023 29.9 16.8 173 67-269 111-309 (367)
474 cd07944 DRE_TIM_HOA_like 4-hyd 70.8 89 0.0019 28.9 12.9 154 73-270 19-178 (266)
475 PLN02428 lipoic acid synthase 70.7 19 0.00042 35.0 7.9 73 16-95 250-323 (349)
476 PRK00366 ispG 4-hydroxy-3-meth 70.6 1.1E+02 0.0024 30.0 15.6 137 11-168 22-184 (360)
477 cd04734 OYE_like_3_FMN Old yel 70.5 78 0.0017 30.4 12.0 92 130-244 208-319 (343)
478 PF13167 GTP-bdg_N: GTP-bindin 70.3 22 0.00047 28.2 6.7 69 33-105 7-77 (95)
479 cd00717 URO-D Uroporphyrinogen 70.2 38 0.00082 32.0 9.7 109 41-157 184-303 (335)
480 PRK12737 gatY tagatose-bisphos 70.1 99 0.0022 29.2 12.4 85 107-240 15-104 (284)
481 PRK12726 flagellar biosynthesi 70.0 1.2E+02 0.0027 30.2 13.8 158 14-199 205-378 (407)
482 cd04738 DHOD_2_like Dihydrooro 70.0 28 0.0006 33.2 8.7 106 15-126 203-323 (327)
483 TIGR01761 thiaz-red thiazoliny 69.9 25 0.00055 34.0 8.5 74 76-157 38-115 (343)
484 cd00564 TMP_TenI Thiamine mono 69.7 52 0.0011 27.7 9.7 129 28-164 37-178 (196)
485 COG3200 AroG 3-deoxy-D-arabino 69.7 15 0.00032 36.0 6.7 88 108-200 260-354 (445)
486 PRK07807 inosine 5-monophospha 69.4 19 0.00041 36.5 7.8 121 7-147 258-394 (479)
487 PRK13957 indole-3-glycerol-pho 69.4 97 0.0021 28.7 17.2 153 7-187 32-197 (247)
488 PF01261 AP_endonuc_2: Xylose 69.1 5.3 0.00011 33.9 3.3 71 29-100 66-138 (213)
489 COG0106 HisA Phosphoribosylfor 69.1 98 0.0021 28.7 17.3 175 32-243 33-224 (241)
490 TIGR03531 selenium_SpcS O-phos 69.1 1.1E+02 0.0024 30.7 13.0 80 118-200 160-246 (444)
491 PRK09517 multifunctional thiam 69.0 1.7E+02 0.0036 31.4 20.5 138 74-244 50-198 (755)
492 KOG0538 Glycolate oxidase [Ene 69.0 80 0.0017 30.6 11.3 147 74-243 85-254 (363)
493 TIGR00853 pts-lac PTS system, 68.9 11 0.00023 29.6 4.7 62 76-137 20-82 (95)
494 COG0434 SgcQ Predicted TIM-bar 68.8 1E+02 0.0022 28.8 20.6 209 28-272 28-261 (263)
495 cd00408 DHDPS-like Dihydrodipi 68.7 95 0.0021 28.4 16.9 124 28-168 16-160 (281)
496 cd04727 pdxS PdxS is a subunit 68.6 15 0.00034 34.7 6.5 104 3-117 99-229 (283)
497 COG2159 Predicted metal-depend 68.5 10 0.00022 35.8 5.3 54 120-173 147-207 (293)
498 cd00739 DHPS DHPS subgroup of 68.5 25 0.00055 32.5 7.9 62 138-199 18-86 (257)
499 PF01081 Aldolase: KDPG and KH 68.2 24 0.00051 31.6 7.3 107 19-158 60-170 (196)
500 COG0042 tRNA-dihydrouridine sy 68.0 11 0.00023 36.2 5.5 81 38-126 156-241 (323)
No 1
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=100.00 E-value=8.8e-81 Score=570.07 Aligned_cols=290 Identities=91% Similarity=1.392 Sum_probs=284.9
Q ss_pred CCchhhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHH
Q 022892 1 MDPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILE 80 (290)
Q Consensus 1 ~~~~~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~ 80 (290)
|-.|.-|||+++.++++++|||||++||+++.+++|++|+++++++|+..+++.+|+|+||||+|+|+|+|+++||+||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~lIAGPC~iEs~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFrG~G~eeGL~iL~ 80 (290)
T PLN03033 1 MASSSLLYNQLKAAEPFFLLAGPNVIESEEHILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILE 80 (290)
T ss_pred CcchhHHHHhcCCCCCeEEEecCChhcCHHHHHHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCCCCCHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCc
Q 022892 81 KVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPN 160 (290)
Q Consensus 81 ~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~ 160 (290)
++++++|+|++||++++++++.+.+++|++|||+|+|+|++||+++|+++|||+||+|++++++||+.|+|+|.+.||++
T Consensus 81 ~vk~~~glpvvTeV~~~~q~~~vae~~DilQIgAr~~rqtdLL~a~~~tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~ 160 (290)
T PLN03033 81 KVKVAYDLPIVTDVHESSQCEAVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMRNSAEKVRLAGNPN 160 (290)
T ss_pred HHHHHHCCceEEeeCCHHHHHHHHhhCcEEeeCcHHHHHHHHHHHHHccCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 161 VMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 161 i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
|+|||||++|+|+++.+|+++++.||++|+||++|+||++|+||+.+++++|+.++|+|++++.+++||+|+||||+|||
T Consensus 161 viLcERG~tFgy~~lv~D~r~ip~mk~~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfiE 240 (290)
T PLN03033 161 VMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFME 240 (290)
T ss_pred EEEEeCCCCcCCCCcccchhhhHHHHhcCCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCccccccCCCCCCC
Q 022892 241 VHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDLTPFRD 290 (290)
Q Consensus 241 kH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~~~~~~~~~~~~~~ 290 (290)
+|++||+|++|++++++|++|++|++++++++.+++.++|..||+||.||
T Consensus 241 vHpdP~~AlsDg~q~l~~~~l~~ll~~l~~i~~~~~~~~~~~~~~~~~~~ 290 (290)
T PLN03033 241 VHDDPLSAPVDGPTQWPLRHLEELLEELIAIARVTKGKQRFQIDLTPYRD 290 (290)
T ss_pred ecCCccccCCCcccCcCHHHHHHHHHHHHHHHHHHhccccCccCcccCCC
Confidence 99999999999999999999999999999999999999999999999997
No 2
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=100.00 E-value=5.2e-74 Score=522.06 Aligned_cols=260 Identities=58% Similarity=0.951 Sum_probs=252.5
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCc
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIP 89 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~ 89 (290)
.||.++++++|||||++||+++.+++|++|++++++.|+..+++.+|+|+||||||+|+|+|+++||+||+++++++|+|
T Consensus 4 ~ig~~~~~~~iAGPC~vEs~e~~~~~A~~lk~~~~~~~~~~~fK~sf~KapRTSp~sFqG~G~eeGL~~L~~vk~~~Glp 83 (264)
T PRK05198 4 EVGNDLPFFLIAGPCVIESRDLALRIAEHLKEITDKLGIPYVFKASFDKANRSSIHSFRGPGLEEGLKILQEVKETFGVP 83 (264)
T ss_pred eeCCCCceEEEecCCcccCHHHHHHHHHHHHHHHHhcCCCeEEeccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHCCc
Confidence 46777789999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred EEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 90 IVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 90 ~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
++||++++.+++.+.+++|++|||+|+|+|++||+++|+++|||+||+|+++|++||+.|+|+|.+.||++|+|||||++
T Consensus 84 vvTeV~~~~~~~~v~~~~DilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~t 163 (264)
T PRK05198 84 VLTDVHEPEQAAPVAEVVDVLQIPAFLCRQTDLLVAAAKTGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTS 163 (264)
T ss_pred eEEEeCCHHHHHHHHhhCcEEEECchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCC
Q 022892 170 FGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAP 249 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~ 249 (290)
|+|+++.+|+++++.||++++||++|+||++|+||+ +++.++|+|++++.+++||+|+||||+|||.|++|++++
T Consensus 164 f~y~r~~~D~~~vp~~k~~~lPVi~DpSHsvq~pg~-----~~~~s~G~r~~v~~la~AAvA~GadGl~iEvHpdP~~Al 238 (264)
T PRK05198 164 FGYNNLVVDMRGLPIMRETGAPVIFDATHSVQLPGG-----QGGSSGGQREFVPVLARAAVAVGVAGLFIETHPDPDNAL 238 (264)
T ss_pred cCCCCeeechhhhHHHhhCCCCEEEeCCccccCCCC-----CCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeCCCccccC
Confidence 999999999999999999789999999999999994 578889999999999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHH
Q 022892 250 VDGPTQWPLRNLEELLEELVAIAKV 274 (290)
Q Consensus 250 ~D~~~sl~p~~l~~lv~~ir~~~~~ 274 (290)
+|++++|+|++|++|+++++.++++
T Consensus 239 sDg~q~l~~~~~~~ll~~l~~i~~~ 263 (264)
T PRK05198 239 SDGPNMLPLDKLEPLLEQLKAIDDL 263 (264)
T ss_pred CCccccCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999875
No 3
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=100.00 E-value=9.4e-74 Score=518.92 Aligned_cols=257 Identities=63% Similarity=1.031 Sum_probs=250.4
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV 94 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~ 94 (290)
+++++|||||++||+++.+++|++|++++++.|+..+++.+|+|+||||||+|+|+|+++||+||+++++++|+|++||+
T Consensus 1 ~~~~viAGPCsvEs~e~~~~~A~~lk~~~~~~~~~~~fk~sf~KapRTsp~sFqG~G~eeGL~iL~~vk~~~glpvvTeV 80 (258)
T TIGR01362 1 EKFFLIAGPCVIESEDHALRVAEKLKELTSKLGVPFIFKSSFDKANRSSIHSFRGPGLEEGLKILQKVKEEFGVPILTDV 80 (258)
T ss_pred CCceEEecCCcccCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceEEEe
Confidence 36899999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred cCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC
Q 022892 95 HETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 95 ~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~ 174 (290)
+++.+++.+.+++|++|||+|+|+|++||+++|+++|||+||+|+++|++||+.|+|+|.+.||++|+|||||++|+|++
T Consensus 81 ~~~~~~~~vae~vDilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf~y~r 160 (258)
T TIGR01362 81 HESSQCEPVAEVVDIIQIPAFLCRQTDLLVAAAKTGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTSFGYNN 160 (258)
T ss_pred CCHHHHHHHHhhCcEEEeCchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCC
Q 022892 175 LIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPT 254 (290)
Q Consensus 175 ~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~ 254 (290)
+.+|+++++.||++++||++|+||++|+||+ +|+.++|+|++++.++++|+++||||+|||.|++||++++|+++
T Consensus 161 ~~~D~~~ip~~k~~~~PVi~DpSHsvq~pg~-----~g~~s~G~r~~v~~la~AAvA~GaDGl~iEvHpdP~~AlsDg~q 235 (258)
T TIGR01362 161 LVVDMRSLPIMRELGCPVIFDATHSVQQPGG-----LGGASGGLREFVPTLARAAVAVGIDGLFMETHPDPKNAKSDGPN 235 (258)
T ss_pred cccchhhhHHHHhcCCCEEEeCCccccCCCC-----CCCCCCCcHHHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccc
Confidence 9999999999999999999999999999994 58888999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhC
Q 022892 255 QWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 255 sl~p~~l~~lv~~ir~~~~~lg 276 (290)
+++|++|++|+++++++++++.
T Consensus 236 ~l~~~~~~~ll~~l~~i~~~~~ 257 (258)
T TIGR01362 236 MLPLSELEGLLEKLLAIDALTK 257 (258)
T ss_pred cCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998764
No 4
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=100.00 E-value=3e-73 Score=520.45 Aligned_cols=263 Identities=46% Similarity=0.760 Sum_probs=255.3
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCc
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIP 89 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~ 89 (290)
.||.++++++|||||++||+++.+++|++|+++++++|+.++++.+|+|+||||||+|+|+|+++||++|+++++++|+|
T Consensus 10 ~ig~~~~~~~iaGPCsvEs~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~Glp 89 (281)
T PRK12457 10 TVGNDLPFVLFGGINVLESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGVP 89 (281)
T ss_pred EEcCCCceEEEecCCcccCHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCc
Confidence 46667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 90 IVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 90 ~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
++|+++++.+++.+.+++|++|||+|+|+|++||+++|+++|||+||+|++++++||+.|+|+|.+.||++|+|||||++
T Consensus 90 vvTeV~~~~~~~~~ae~vDilQIgAr~~rntdLL~a~~~t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~ 169 (281)
T PRK12457 90 VITDVHEVEQAAPVAEVADVLQVPAFLARQTDLVVAIAKTGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSS 169 (281)
T ss_pred eEEEeCCHHHHHHHhhhCeEEeeCchhhchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCchhHHHHHhc--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 170 FGYNDLIVDPRNLEWMREA--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
|+|+++.+|+++++.||+. |+||++|+||++|+||+ +++.++|+|++++.+++||+|.||||+|||+|++||+
T Consensus 170 fgy~~~~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~-----~g~~s~G~re~v~~larAAvA~GaDGl~iEvHpdP~~ 244 (281)
T PRK12457 170 FGYDNLVVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDP-----LGAASGGRRRQVLDLARAGMAVGLAGLFLEAHPDPDR 244 (281)
T ss_pred CCCCCcccchHHHHHHHhhCCCCCEEEeCCccccCCCC-----CCCCCCCCHHHHHHHHHHHHHhCCCEEEEEecCCccc
Confidence 9999999999999999994 99999999999999984 5788899999999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 248 APVDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
||+|++++|++++|++|+++++.++++++.
T Consensus 245 AlsDg~q~l~~~~~~~l~~~l~~i~~~~~~ 274 (281)
T PRK12457 245 ARCDGPSALPLDQLEPFLSQVKALDDLVKS 274 (281)
T ss_pred cCCCcccccCHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999876
No 5
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=100.00 E-value=9.3e-68 Score=502.50 Aligned_cols=245 Identities=31% Similarity=0.524 Sum_probs=236.0
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCc
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIP 89 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~ 89 (290)
.+|.++++++|||||+|||.++.+++|+++++. |+.+++..+|+ ||||||+|+|+| ++||++|+++++++||+
T Consensus 95 ~iGg~~~l~vIAGPCsIEs~eq~l~~A~~lk~~----g~~~~r~g~~k--pRtsp~sf~G~g-~~gl~~L~~~~~e~Gl~ 167 (352)
T PRK13396 95 PFGENHPVVVVAGPCSVENEEMIVETAKRVKAA----GAKFLRGGAYK--PRTSPYAFQGHG-ESALELLAAAREATGLG 167 (352)
T ss_pred EecCCCeEEEEEeCCcccCHHHHHHHHHHHHHc----CCCEEEeeeec--CCCCCcccCCch-HHHHHHHHHHHHHcCCc
Confidence 356677899999999999999999999999996 99999988887 999999999999 99999999999999999
Q ss_pred EEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-
Q 022892 90 IVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT- 168 (290)
Q Consensus 90 ~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs- 168 (290)
|+||+||+.+++++.+++|++|||||+|+|++||+++|+++|||+|||||++|++||++|+++|.+.||++++|||||+
T Consensus 168 ~~tev~d~~~v~~~~~~~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~r 247 (352)
T PRK13396 168 IITEVMDAADLEKIAEVADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIR 247 (352)
T ss_pred EEEeeCCHHHHHHHHhhCCeEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC--CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCC
Q 022892 169 MF--GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 245 (290)
Q Consensus 169 ~~--~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~ 245 (290)
+| +|+++++||++|+.||+ +|+||++|+||+. |.+++++.++++|+++||||+|||+||||
T Consensus 248 tf~s~y~~~~~dl~ai~~lk~~~~lPVi~DpsH~~----------------G~sd~~~~~a~AAva~GAdGliIE~H~~p 311 (352)
T PRK13396 248 TFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPSHGT----------------GKSEYVPSMAMAAIAAGTDSLMIEVHPNP 311 (352)
T ss_pred cCcCCCCCCCcCHHHHHHHHHhhCCCEEECCcccC----------------CcHHHHHHHHHHHHhhCCCeEEEEecCCc
Confidence 46 68899999999999999 8999999999996 88999999999999999999999999999
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 246 LNAPVDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 246 dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
|++++||++||+|++|++|++++|+++.++|+
T Consensus 312 d~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g~ 343 (352)
T PRK13396 312 AKALSDGPQSLTPDRFDRLMQELAVIGKTVGR 343 (352)
T ss_pred ccCCChhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999987
No 6
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=100.00 E-value=2.9e-67 Score=497.55 Aligned_cols=241 Identities=36% Similarity=0.545 Sum_probs=230.4
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD 93 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~ 93 (290)
++++++|||||++|+.++.+++|++|+++ |+++++.+.|+ ||||||+|+|++ ++||++|+++|+++||+|+||
T Consensus 91 ~~~~~~IAGPCsiEs~e~~~~~A~~lk~~----ga~~~r~~~fK--pRTsp~sf~G~g-~~gL~~L~~~~~~~Gl~v~te 163 (335)
T PRK08673 91 GGKPVVIAGPCSVESEEQILEIARAVKEA----GAQILRGGAFK--PRTSPYSFQGLG-EEGLKLLAEAREETGLPIVTE 163 (335)
T ss_pred CCceEEEEecCccCCHHHHHHHHHHHHHh----chhhccCcEec--CCCCCccccccc-HHHHHHHHHHHHHcCCcEEEe
Confidence 56899999999999999999999999996 77765555554 999999999999 899999999999999999999
Q ss_pred ecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-CC-C
Q 022892 94 VHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT-MF-G 171 (290)
Q Consensus 94 ~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs-~~-~ 171 (290)
+||+.+++++.+++|++||||++|+|++||+++|+++|||+|||||++|++||+.|+++|.+.||++++|||||+ +| +
T Consensus 164 v~d~~~~~~l~~~vd~lqIgAr~~~N~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~ 243 (335)
T PRK08673 164 VMDPRDVELVAEYVDILQIGARNMQNFDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFET 243 (335)
T ss_pred eCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 67 7
Q ss_pred CCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCC
Q 022892 172 YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPV 250 (290)
Q Consensus 172 y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~ 250 (290)
|+++++||++++.||+ +++||++||||++ |.|++++.++++|+++||||+|||+||||||+++
T Consensus 244 ~~~~~ldl~ai~~lk~~~~lPVi~d~sH~~----------------G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~als 307 (335)
T PRK08673 244 ATRNTLDLSAVPVIKKLTHLPVIVDPSHAT----------------GKRDLVEPLALAAVAAGADGLIVEVHPDPEKALS 307 (335)
T ss_pred cChhhhhHHHHHHHHHhcCCCEEEeCCCCC----------------ccccchHHHHHHHHHhCCCEEEEEecCCcccCCC
Confidence 8899999999999999 9999999999996 8899999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 251 DGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 251 D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
||++||+|++|++|++++|+++.++|.
T Consensus 308 D~~~sl~p~e~~~lv~~i~~i~~~~g~ 334 (335)
T PRK08673 308 DGPQSLTPEEFEELMKKLRAIAEALGR 334 (335)
T ss_pred cchhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999985
No 7
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=100.00 E-value=3.7e-67 Score=484.16 Aligned_cols=241 Identities=36% Similarity=0.582 Sum_probs=228.5
Q ss_pred hcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcE
Q 022892 11 LKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPI 90 (290)
Q Consensus 11 i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~ 90 (290)
||. +++++|||||+|||.++.+++|++|++ +|+.+++..+|+ |||+|++|+|++ ++|+++|+++|+++||+|
T Consensus 23 ~g~-~~~~~iaGPCsie~~~~~~~~A~~lk~----~g~~~~r~~~~k--pRTs~~s~~G~g-~~gl~~l~~~~~~~Gl~~ 94 (266)
T PRK13398 23 IGG-EEKIIIAGPCAVESEEQMVKVAEKLKE----LGVHMLRGGAFK--PRTSPYSFQGLG-EEGLKILKEVGDKYNLPV 94 (266)
T ss_pred EcC-CCEEEEEeCCcCCCHHHHHHHHHHHHH----cCCCEEEEeeec--CCCCCCccCCcH-HHHHHHHHHHHHHcCCCE
Confidence 444 489999999999999999999999999 498877666665 999999999998 899999999999999999
Q ss_pred EEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-C
Q 022892 91 VTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT-M 169 (290)
Q Consensus 91 ~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs-~ 169 (290)
+|||||+.+++++.+++||+||||++++|++||+++|++++||+|||||+++++||++|+++|.+.||++++|||||+ +
T Consensus 95 ~te~~d~~~~~~l~~~vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t 174 (266)
T PRK13398 95 VTEVMDTRDVEEVADYADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRT 174 (266)
T ss_pred EEeeCChhhHHHHHHhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998 3
Q ss_pred C-CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 170 F-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~-~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
+ +|+++++||++++.||+ +++||++||||++ |+|++++.++++|+++||+|+|||+||||||
T Consensus 175 ~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~----------------G~~~~v~~~~~aAva~Ga~Gl~iE~H~~pd~ 238 (266)
T PRK13398 175 FETYTRNTLDLAAVAVIKELSHLPIIVDPSHAT----------------GRRELVIPMAKAAIAAGADGLMIEVHPEPEK 238 (266)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCEEEeCCCcc----------------cchhhHHHHHHHHHHcCCCEEEEeccCCccc
Confidence 4 68888999999999999 8999999999997 7889999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 022892 248 APVDGPTQWPLRNLEELLEELVAIAKVS 275 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ir~~~~~l 275 (290)
+++||++|++|++|++|++.+|++++++
T Consensus 239 a~~D~~~sl~p~~l~~l~~~i~~~~~~~ 266 (266)
T PRK13398 239 ALSDARQTLNFEEMKELVDELKPMAKAL 266 (266)
T ss_pred cCCchhhcCCHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999998764
No 8
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=100.00 E-value=7e-66 Score=474.45 Aligned_cols=237 Identities=34% Similarity=0.518 Sum_probs=223.5
Q ss_pred hcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcE
Q 022892 11 LKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPI 90 (290)
Q Consensus 11 i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~ 90 (290)
+|.++ +++|||||++|+.++.+++|++|++.+.+ +.+.+++| |||+|++|+|++ ++||++|+++|+++||+|
T Consensus 21 ~g~~~-~~~IAGpc~ie~~~~~~~~A~~lk~~~~k-----~~r~~~~K-pRtsp~s~~g~g-~~gl~~l~~~~~~~Gl~~ 92 (260)
T TIGR01361 21 IGEGS-PIVIAGPCSVESEEQIMETARFVKEAGAK-----ILRGGAFK-PRTSPYSFQGLG-EEGLKLLRRAADEHGLPV 92 (260)
T ss_pred EcCCc-EEEEEeCCccCCHHHHHHHHHHHHHHHHH-----hccCceec-CCCCCccccccH-HHHHHHHHHHHHHhCCCE
Confidence 44444 78899999999999999999999998777 34455665 999999999999 899999999999999999
Q ss_pred EEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-C
Q 022892 91 VTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT-M 169 (290)
Q Consensus 91 ~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs-~ 169 (290)
+|||||+.+++++.+++|++||||++++|++||+++|+++|||+|||||++|++||++|+++|++.||++++|||||+ +
T Consensus 93 ~t~~~d~~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~ 172 (260)
T TIGR01361 93 VTEVMDPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRT 172 (260)
T ss_pred EEeeCChhhHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999977 6
Q ss_pred C-CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 170 F-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~-~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
| +|+++++||++|+.||+ |++|||+||||+. |+|++++.++++|+++||+|+|||+||||||
T Consensus 173 y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~----------------G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d~ 236 (260)
T TIGR01361 173 FEKATRNTLDLSAVPVLKKETHLPIIVDPSHAA----------------GRRDLVIPLAKAAIAAGADGLMIEVHPDPEK 236 (260)
T ss_pred CCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCC----------------CccchHHHHHHHHHHcCCCEEEEEeCCCccc
Confidence 8 88899999999999999 8999999999995 8899999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHH
Q 022892 248 APVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
+++||++|++|++|++||+++|++
T Consensus 237 a~~D~~~sl~p~~l~~lv~~i~~~ 260 (260)
T TIGR01361 237 ALSDSKQQLTPEEFKRLVKELRAL 260 (260)
T ss_pred cCCcchhcCCHHHHHHHHHHHhhC
Confidence 999999999999999999999863
No 9
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=100.00 E-value=3.1e-65 Score=465.57 Aligned_cols=233 Identities=29% Similarity=0.449 Sum_probs=218.8
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV 94 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~ 94 (290)
+...+|||||++||+++.+++|+++++ +|+.+++..+|+ ||||||+|+|+| .+||++|+++|+++||+|+||+
T Consensus 14 ~~~~~iaGPC~vEs~e~~~~~a~~~~~----~g~~~~r~g~~k--pRts~~sf~G~G-~~gl~~L~~~~~~~Gl~~~Tev 86 (250)
T PRK13397 14 SKNNFIVGPCSIESYDHIRLAASSAKK----LGYNYFRGGAYK--PRTSAASFQGLG-LQGIRYLHEVCQEFGLLSVSEI 86 (250)
T ss_pred CCCcEEeccCccCCHHHHHHHHHHHHH----cCCCEEEecccC--CCCCCcccCCCC-HHHHHHHHHHHHHcCCCEEEee
Confidence 345899999999999999999999666 699999999998 999999999999 5899999999999999999999
Q ss_pred cCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-CC-C
Q 022892 95 HETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM-FG-Y 172 (290)
Q Consensus 95 ~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~-~~-y 172 (290)
||+.+++++.+++|++||||++++|++||+++|+++|||+||||+++|++||++|+++|.+.||++++|||||++ |+ +
T Consensus 87 ~d~~~v~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~ 166 (250)
T PRK13397 87 MSERQLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVE 166 (250)
T ss_pred CCHHHHHHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCc
Confidence 999999999999999999999999999999999999999999997779999999999999999999999997763 43 2
Q ss_pred CCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCC
Q 022892 173 NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 251 (290)
Q Consensus 173 ~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D 251 (290)
+++.+||++|+.||+ |++||++|+||+. |+|++++.++++|+++||+|+|||+||+||++++|
T Consensus 167 ~~n~~dl~ai~~lk~~~~lPVivd~SHs~----------------G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~sD 230 (250)
T PRK13397 167 TRNMLDIMAVPIIQQKTDLPIIVDVSHST----------------GRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALSD 230 (250)
T ss_pred cccccCHHHHHHHHHHhCCCeEECCCCCC----------------cccchHHHHHHHHHHhCCCEEEEEecCCcccccCc
Confidence 223899999999999 9999999999995 89999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHH
Q 022892 252 GPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 252 ~~~sl~p~~l~~lv~~ir~ 270 (290)
+++||+|++|++|++++|.
T Consensus 231 ~~q~l~~~~l~~l~~~~~~ 249 (250)
T PRK13397 231 AAQQIDYKQLEQLGQELWQ 249 (250)
T ss_pred hhhhCCHHHHHHHHHHhcc
Confidence 9999999999999999873
No 10
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=7.5e-64 Score=446.18 Aligned_cols=263 Identities=56% Similarity=0.909 Sum_probs=255.6
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCc
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIP 89 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~ 89 (290)
.++.+.++.+|||||++|+.+..+++|.+|++++.+.|+..|++.+|+|++|||.++|+|+|+++||+.|.++.+++|++
T Consensus 11 ~~~n~~~~~LiaGpcviEs~d~a~~~a~~lk~~t~~lgi~~vfKsSfDKANRsSi~s~RGpGLeeglki~~~vK~efgv~ 90 (279)
T COG2877 11 VIGNDLPFVLIAGPCVIESRDLALEIAEHLKELTEKLGIPYVFKSSFDKANRSSIHSYRGPGLEEGLKILQEVKEEFGVP 90 (279)
T ss_pred EecCCCceEEEeccceeccHHHHHHHHHHHHHHHhccCCceEEecccccccccccccccCCCHHHHHHHHHHHHHHcCCc
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 90 IVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 90 ~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
++|++|.+.+++.+++.+|++||+++.++|++||.++|++|++|++|+|++.++++|++.++++.+.||++++||+||++
T Consensus 91 ilTDVHe~~q~~~vA~VvDilQiPAFLcRQTDLl~A~AkTg~~vNiKKgQFLaPwdMknvv~K~~~~gn~~v~lcERG~s 170 (279)
T COG2877 91 ILTDVHEPSQAQPVAEVVDVLQIPAFLCRQTDLLVAAAKTGAVVNVKKGQFLAPWDMKNIVEKFLETGNNKVILCERGAS 170 (279)
T ss_pred eeeccCChhhcchHHhhhhhhcchHHHhhhHHHHHHHHHhCCeEeeccccccChhHhhhHHHHHHhcCCCcEEEEeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCC
Q 022892 170 FGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAP 249 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~ 249 (290)
|+|++..+|+++++.||++++||+||.+|++|+||+. |++|+|+|++++.+++||+|.|++|++||.|++|++++
T Consensus 171 FGYnnLV~DMrsl~iM~~~~~PViFDaTHSvQ~pgg~-----g~~SGG~refv~~LaRAa~AvGvaGlF~EtHpdP~~A~ 245 (279)
T COG2877 171 FGYNNLVVDMRSLPIMKEFGAPVIFDATHSVQQPGGQ-----GGSSGGRREFVPTLARAAVAVGVAGLFIETHPDPDNAK 245 (279)
T ss_pred cCcchhHHHhhhhHHHHHcCCCeEEecccceeCCCCC-----CCCCCCcchhHHHHHHHHHHhccceEEEeccCCcccCC
Confidence 9999999999999999999999999999999999954 88899999999999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 250 VDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 250 ~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
+|++.++.+++|+.++..+.++......
T Consensus 246 sDgp~mlpL~~le~ll~~l~~~d~l~k~ 273 (279)
T COG2877 246 SDGPNMLPLDKLEALLEQLKAIDDLVKS 273 (279)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999887644
No 11
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-64 Score=454.14 Aligned_cols=243 Identities=33% Similarity=0.506 Sum_probs=233.1
Q ss_pred hcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcE
Q 022892 11 LKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPI 90 (290)
Q Consensus 11 i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~ 90 (290)
++.++.+.|||||||+||.++..+.|+.+++ +|+++++-..|+ ||||||+|||+| +++|++|++.++++|+++
T Consensus 40 ~g~~~~~~viAGPCsvEs~E~i~~~A~~vk~----~Ga~~lRGgafK--PRTSPYsFQGlg-e~gL~~l~~a~~~~Gl~v 112 (286)
T COG2876 40 IGEGRALRVIAGPCSVESEEQVRETAESVKA----AGAKALRGGAFK--PRTSPYSFQGLG-EEGLKLLKRAADETGLPV 112 (286)
T ss_pred ecCCcceEEEecCcccCCHHHHHHHHHHHHH----cchhhccCCcCC--CCCCcccccccC-HHHHHHHHHHHHHcCCee
Confidence 4556668999999999999999999999998 499999999998 999999999999 899999999999999999
Q ss_pred EEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-
Q 022892 91 VTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM- 169 (290)
Q Consensus 91 ~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~- 169 (290)
+||++|+++++.+.+++|++|||+|+|+|++||+++++.+|||+||+|++.|++||+.|+|||.++||++++||+||..
T Consensus 113 vtEvm~~~~~e~~~~y~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRt 192 (286)
T COG2876 113 VTEVMDVRDVEAAAEYADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRT 192 (286)
T ss_pred EEEecCHHHHHHHHhhhhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred C-CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 170 F-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~-~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
| .|.++.+|+.+++.+|+ +|+||++|+||+. |+|+++..++.+|+|.||||+|||.|++|++
T Consensus 193 fe~~TRntLDi~aV~~~kq~THLPVivDpSH~~----------------Grr~lv~pla~AA~AaGAdglmiEVHp~P~~ 256 (286)
T COG2876 193 FEKATRNTLDISAVPILKQETHLPVIVDPSHAT----------------GRRDLVEPLAKAAIAAGADGLMIEVHPDPEK 256 (286)
T ss_pred ccccccceechHHHHHHHhhcCCCEEECCCCcc----------------cchhhHHHHHHHHHhccCCeeEEEecCCccc
Confidence 5 47778999999999999 9999999999996 8999999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhC
Q 022892 248 APVDGPTQWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ir~~~~~lg 276 (290)
+++|++|||+|++|++|++.++.+..++|
T Consensus 257 AlsD~~Qql~~~~f~~l~~~~~~~~~~~~ 285 (286)
T COG2876 257 ALSDAKQQLTPEEFEELVKELRALADALG 285 (286)
T ss_pred ccCcccccCCHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999987765
No 12
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=100.00 E-value=3.9e-62 Score=467.54 Aligned_cols=242 Identities=32% Similarity=0.505 Sum_probs=225.4
Q ss_pred hcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcE
Q 022892 11 LKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPI 90 (290)
Q Consensus 11 i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~ 90 (290)
+|.++ +++|||||++|+.++.+++|++|++ .|+.+++.++|+ ||||||+|+|++ .+|+++|+++|+++||+|
T Consensus 114 ~g~~~-~~~iaGpc~iE~~~~~~~~A~~lk~----~g~~~~r~~~~k--pRtsp~~f~g~~-~e~l~~L~~~~~~~Gl~~ 185 (360)
T PRK12595 114 IGDGN-QSFIFGPCSVESYEQVEAVAKALKA----KGLKLLRGGAFK--PRTSPYDFQGLG-VEGLKILKQVADEYGLAV 185 (360)
T ss_pred ecCCC-eeeEEecccccCHHHHHHHHHHHHH----cCCcEEEccccC--CCCCCccccCCC-HHHHHHHHHHHHHcCCCE
Confidence 44444 5668899999999999999999988 599999988887 999999999999 599999999999999999
Q ss_pred EEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec-CC
Q 022892 91 VTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG-TM 169 (290)
Q Consensus 91 ~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~g-s~ 169 (290)
+|||||+.+++++.+++|++||||++++|++||+++|++++||+|||||++|++||+.|+++|.+.||++|+||||| ++
T Consensus 186 ~t~v~d~~~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~ 265 (360)
T PRK12595 186 ISEIVNPADVEVALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRT 265 (360)
T ss_pred EEeeCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCC
Confidence 99999999999999999999999999999999999999999999999997799999999999999999999999954 55
Q ss_pred CC-CCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 170 FG-YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~~-y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
|+ ++.+++||++|+.||+ |++|||+|+||+. |+|++++.++++|+++||||+|||+||+|++
T Consensus 266 yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~----------------G~r~~~~~~a~aAva~GAdg~~iE~H~dp~~ 329 (360)
T PRK12595 266 YEKATRNTLDISAVPILKQETHLPVMVDVTHST----------------GRRDLLLPTAKAALAIGADGVMAEVHPDPAV 329 (360)
T ss_pred CCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCC----------------cchhhHHHHHHHHHHcCCCeEEEEecCCCCC
Confidence 65 3356799999999999 9999999999995 8899999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhC
Q 022892 248 APVDGPTQWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~~ir~~~~~lg 276 (290)
+++||++||+|++|++|++.+|.+.+.+.
T Consensus 330 a~~D~~~sl~p~el~~l~~~i~~~~~~~~ 358 (360)
T PRK12595 330 ALSDSAQQMDIPEFDRFLDELKPLANKLN 358 (360)
T ss_pred CCCchhhhCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999988753
No 13
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=100.00 E-value=1.3e-61 Score=458.48 Aligned_cols=242 Identities=18% Similarity=0.198 Sum_probs=218.8
Q ss_pred eEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcc----------cC---------CCCCh-hHHH
Q 022892 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSK----------SF---------RGPGM-VEGL 76 (290)
Q Consensus 17 ~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~----------~~---------~g~~~-~~~l 76 (290)
+|||||+++ ||+|++++|++|++.|+++|+|+||||+|..+..+++. .| +.+.+ .+++
T Consensus 1 ~~iIAEig~--NH~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~ 78 (329)
T TIGR03569 1 TFIIAEAGV--NHNGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDH 78 (329)
T ss_pred CEEEEEeCC--CccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHH
Confidence 589999999 99999999999999999999999999999743221111 12 11222 5899
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHHhhh-cceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~-~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
++|+++|+++||+|+|||||.++++++.++ ++++||||++++|+|||+++|++||||+|||||+ |++||+.||+++++
T Consensus 79 ~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGma-tl~Ei~~Av~~i~~ 157 (329)
T TIGR03569 79 RELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMA-TLEEIEAAVGVLRD 157 (329)
T ss_pred HHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCC-CHHHHHHHHHHHHH
Confidence 999999999999999999999999999996 9999999999999999999999999999999998 99999999999999
Q ss_pred cCCC--cEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc
Q 022892 156 AGNP--NVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV 232 (290)
Q Consensus 156 ~Gn~--~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~ 232 (290)
.||+ +++||||++.||++.+++||++|++||+ |++|||+ |||+. | ..++++|+++
T Consensus 158 ~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~-SdHt~----------------G-----~~~~~aAval 215 (329)
T TIGR03569 158 AGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGY-SDHTL----------------G-----IEAPIAAVAL 215 (329)
T ss_pred cCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEE-CCCCc----------------c-----HHHHHHHHHc
Confidence 9997 5999999999999999999999999999 9999998 99995 6 6789999999
Q ss_pred CCCEEEEeeeCCCCCCC--CCCCCCCChHHHHHHHHHHHHHHHHhCC--ccccccCC
Q 022892 233 GVDGVFMEVHDDPLNAP--VDGPTQWPLRNLEELLEELVAIAKVSKG--KQRMNIDL 285 (290)
Q Consensus 233 GA~G~~IEkH~t~dka~--~D~~~sl~p~~l~~lv~~ir~~~~~lg~--~~~~~~~~ 285 (290)
||+ ||||||||||++ +||++||+|+||++||+.+|+++.++|+ |++.+.|.
T Consensus 216 GA~--iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~~~k~~~~~E~ 270 (329)
T TIGR03569 216 GAT--VIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGDGVKRPTPSEQ 270 (329)
T ss_pred CCC--EEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 998 999999999999 5999999999999999999999999998 55444443
No 14
>TIGR03586 PseI pseudaminic acid synthase.
Probab=100.00 E-value=5.2e-61 Score=454.06 Aligned_cols=242 Identities=17% Similarity=0.145 Sum_probs=218.4
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCc-----c-----cCC---------CCCh-hHH
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSS-----K-----SFR---------GPGM-VEG 75 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~-----~-----~~~---------g~~~-~~~ 75 (290)
++|||||+|+ ||+|++++|++|++.|+++|+|+||||+|..+...++ + .|. ++.+ .++
T Consensus 1 ~~~iIAEiG~--NH~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~ 78 (327)
T TIGR03586 1 PPFIIAELSA--NHNGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEW 78 (327)
T ss_pred CCEEEEEECC--CCCChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHH
Confidence 5799999999 9999999999999999999999999999984321111 1 121 1112 467
Q ss_pred HHHHHHHHHhcCCcEEEeecCcccHHHHhhh-cceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 022892 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 154 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~-~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~ 154 (290)
+++|+++|+++||+|+|||||.++++++.++ ++++||||++++|++||+++|+++|||+|||||+ |++||+.|+++|.
T Consensus 79 ~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~-t~~Ei~~Av~~i~ 157 (327)
T TIGR03586 79 HKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIA-TLEEIQEAVEACR 157 (327)
T ss_pred HHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCC-CHHHHHHHHHHHH
Confidence 7889999999999999999999999999996 9999999999999999999999999999999998 9999999999999
Q ss_pred HcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC
Q 022892 155 LAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG 233 (290)
Q Consensus 155 ~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G 233 (290)
+.||++++||||+++||++.+++||++|++||+ |++|||| |||+. | ..++++|+++|
T Consensus 158 ~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~-SDHt~----------------G-----~~~~~aAva~G 215 (327)
T TIGR03586 158 EAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGL-SDHTL----------------G-----ILAPVAAVALG 215 (327)
T ss_pred HCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEe-eCCCC----------------c-----hHHHHHHHHcC
Confidence 999999999999999999889999999999999 9999999 89995 6 68899999999
Q ss_pred CCEEEEeeeCCCCCCC--CCCCCCCChHHHHHHHHHHHHHHHHhCC--ccccccC
Q 022892 234 VDGVFMEVHDDPLNAP--VDGPTQWPLRNLEELLEELVAIAKVSKG--KQRMNID 284 (290)
Q Consensus 234 A~G~~IEkH~t~dka~--~D~~~sl~p~~l~~lv~~ir~~~~~lg~--~~~~~~~ 284 (290)
|+ ||||||||||++ +||++||+|+||++||+.+|+++.++|+ |++.+.|
T Consensus 216 A~--iIEkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~~lg~~~k~~~~~E 268 (327)
T TIGR03586 216 AC--VIEKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWLALGEVNYELSEKE 268 (327)
T ss_pred CC--EEEeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 98 999999999999 6999999999999999999999999999 4444444
No 15
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.7e-59 Score=432.54 Aligned_cols=252 Identities=15% Similarity=0.154 Sum_probs=228.4
Q ss_pred hhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCccc----------CCC---------
Q 022892 9 NQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKS----------FRG--------- 69 (290)
Q Consensus 9 ~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~----------~~g--------- 69 (290)
+.|+.+++++||||+++ ||+|++++|++|+++|+++|||+||+|+|.....-++.+ |.+
T Consensus 7 r~i~~~~~~~iIAEig~--NHnG~le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~ 84 (347)
T COG2089 7 RTIGKDKKPFIIAEIGA--NHNGDLERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEE 84 (347)
T ss_pred eeecCCCCcEEEeeecc--cccCcHHHHHHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHH
Confidence 46788999999999998 999999999999999999999999999944323333221 111
Q ss_pred CCh-hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh-cceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHH
Q 022892 70 PGM-VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMV 147 (290)
Q Consensus 70 ~~~-~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~-~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~ 147 (290)
..+ .++...|+++|++.||.|+|||||..+++++.+. +++|||||++++|+|||+++|+++|||||||||+ +++|+.
T Consensus 85 ~~~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma-~~~ei~ 163 (347)
T COG2089 85 AETPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMA-TIEEIE 163 (347)
T ss_pred hcCCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccc-cHHHHH
Confidence 111 3778889999999999999999999999999994 9999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHH
Q 022892 148 NSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIA 226 (290)
Q Consensus 148 ~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a 226 (290)
.|++++++.||++++|+||+++||.|.+++||++|+.|++ |+++||+ |||+. | ..++
T Consensus 164 ~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGl-SDHT~----------------g-----~~a~ 221 (347)
T COG2089 164 EAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGL-SDHTL----------------G-----ILAP 221 (347)
T ss_pred HHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCcccc-ccCcc----------------c-----hhHH
Confidence 9999999999999999999999888888999999999999 9999999 99996 6 6789
Q ss_pred HHHHHcCCCEEEEeeeCCCCCCC--CCCCCCCChHHHHHHHHHHHHHHHHhCC--ccccccCCCC
Q 022892 227 RTAIAVGVDGVFMEVHDDPLNAP--VDGPTQWPLRNLEELLEELVAIAKVSKG--KQRMNIDLTP 287 (290)
Q Consensus 227 ~aAva~GA~G~~IEkH~t~dka~--~D~~~sl~p~~l~~lv~~ir~~~~~lg~--~~~~~~~~~~ 287 (290)
.+|||+||+ |||||||+||++ +||++||+|++|++||+.+|++++++|+ |.+...|.+.
T Consensus 222 l~AvALGA~--viEKHFtldk~~~GpD~~fSldP~efk~mv~~ir~~~~alG~~~k~~~~~E~~~ 284 (347)
T COG2089 222 LAAVALGAS--VIEKHFTLDKSREGPDHAFSLDPDEFKEMVDAIRQVEKALGDGEKEILPSEEET 284 (347)
T ss_pred HHHHHhccc--ceeeeeeecCCCCCCCcceecCHHHHHHHHHHHHHHHHHhCCCccccChhHHHH
Confidence 999999996 999999999999 5999999999999999999999999999 8888887765
No 16
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=100.00 E-value=5.5e-57 Score=417.15 Aligned_cols=253 Identities=38% Similarity=0.593 Sum_probs=231.0
Q ss_pred hcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCC
Q 022892 11 LKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDI 88 (290)
Q Consensus 11 i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi 88 (290)
+|.++|+++|||||||||.++.+++|++|++++++++ +..+++.+|+| ||||+++|+|++.+.+|++|.++++++|+
T Consensus 11 ~G~~~~l~viaGPCsies~e~~~~~A~~l~~~~~~~~~~i~~~~~~~~~K-pRts~~~f~G~g~d~~L~~l~~v~~~~gl 89 (270)
T PF00793_consen 11 IGKDKRLLVIAGPCSIESEEQALEYAERLKELGEKLGDRIPLRMRAYFEK-PRTSPYSFQGLGLDPGLDILSEVKEGLGL 89 (270)
T ss_dssp ETTTSSEEEEEEESB-S-HHHHHHHHHHHHHHHHHHTTTEEEEEEECSC--TTSSTTST-CSTHHHHHHHHHHHHHHHT-
T ss_pred ecCCCceEEEEECCccCCHHHHHHHHHHHHHhhhhcCcceEEEEEEEecC-CccCCCCCCCCCCCccchhHHHHHhhhCC
Confidence 5678899999999999999999999999999999998 77899999998 79999999999976779999999999999
Q ss_pred cEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC-CCcEEEEeec
Q 022892 89 PIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG-NPNVMVCERG 167 (290)
Q Consensus 89 ~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G-n~~i~L~~~g 167 (290)
|++||++|+.+++++.+++||++||||+|+|+++++++|++++||+||||++.++++|..|++++...| |+++.+||||
T Consensus 90 pv~tEv~~~~~~~~~~d~vd~lqIgAr~~~n~~ll~~as~~~~pV~~K~g~~~ai~~~~~Aae~~~~~G~n~~~~l~erg 169 (270)
T PF00793_consen 90 PVATEVLDPEQAEYVADLVDWLQIGARLMENQDLLEAASGTGKPVGFKNGTFAAIDEWLAAAEKHLFLGINSGNILCERG 169 (270)
T ss_dssp EEEEEESSGGGHHHHHTTESEEEE-GGGTTCHHHHHHHHCTSSEEEEEE-TTSHGGGHHHHHHHHHHTTECSSEEEEEEE
T ss_pred eeeEEecCcccHHHHHhcCcEEEECcchhcCHHHHHHhccCCCeEEeccCCccCHHHHHHHHhhhhhhcCCCCCeeeeee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred CCCCC--CCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 168 TMFGY--NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 168 s~~~y--~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.+++| +...+|+++++.+++ .++||++|+||+++.++ +|++++++.+++++++.|++|+|||+|+.
T Consensus 170 lr~g~~~n~~~~di~~~~~~~~~~~lpVivD~SH~~~~~~-----------~~~q~~V~~~a~aaia~GidGlmiEsH~~ 238 (270)
T PF00793_consen 170 LRGGYGPNYNVLDIAAVPIMKKKTHLPVIVDPSHANSRKD-----------GGRQELVPPLARAAIAAGIDGLMIESHPD 238 (270)
T ss_dssp EEESSSSSSEEHHTTHHHHHHHHTSSEEEEEHHHHTTTCG-----------GGGHCGHHHHHHHHHHHTESEEEEEEESS
T ss_pred eeccccccccchhHHHHHHHHHhcCCCEEECchhhhcccc-----------CCchhhHHHHHHHHHhhcCCEEEEeecCC
Confidence 97554 556789999999999 78999999999996664 36778999999999999999999999999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 022892 245 PLNAPVDGPTQWPLRNLEELLEELVAIAKVS 275 (290)
Q Consensus 245 ~dka~~D~~~sl~p~~l~~lv~~ir~~~~~l 275 (290)
|+++++|.+++|+++++..++..++++.+.+
T Consensus 239 p~~a~~d~~~~l~~~~~~~~~~~~~~~~~~v 269 (270)
T PF00793_consen 239 PGKALSDGPQQLTYGQSITLLCILWEITEIV 269 (270)
T ss_dssp GGGTSSSGGGSEEGGGHHHHHHHHHHHHHHH
T ss_pred cccCCCCCccCCCcchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999887654
No 17
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=100.00 E-value=5.5e-54 Score=391.10 Aligned_cols=214 Identities=18% Similarity=0.148 Sum_probs=171.0
Q ss_pred HHHHHHHcCCCEEeccccccCCCCCccc----C---------------CCCCh-hHHHHHHHHHHHhcCCcEEEeecCcc
Q 022892 39 IKSISTKVGLPLVFKSSFDKANRTSSKS----F---------------RGPGM-VEGLKILEKVKIAYDIPIVTDVHETV 98 (290)
Q Consensus 39 L~~~a~~~G~~~V~~~~~~k~~rts~~~----~---------------~g~~~-~~~l~~L~~~~~~~Gi~~~s~~~d~~ 98 (290)
||+.|+++|+|+||||.|..+...++.. | +.+.+ .+++++|+++|++.||.|++||||++
T Consensus 1 lI~~A~~aGaDaVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~gi~f~stpfd~~ 80 (241)
T PF03102_consen 1 LIDAAAEAGADAVKFQTFTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKELGIDFFSTPFDEE 80 (241)
T ss_dssp HHHHHHHHT-SEEEEEEB-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHTT-EEEEEE-SHH
T ss_pred CHHHHHHhCCCEEEEEEEchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHcCCEEEECCCCHH
Confidence 7899999999999999998532222211 1 11112 47899999999999999999999999
Q ss_pred cHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCC
Q 022892 99 QCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV 177 (290)
Q Consensus 99 ~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~ 177 (290)
+++++.+ .++++||+|++++|++||+++|++||||||||||+ |++|+..||+.+++.||.+++|+||+++||.+.+++
T Consensus 81 s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~s-tl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~ 159 (241)
T PF03102_consen 81 SVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMS-TLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDV 159 (241)
T ss_dssp HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT---HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG-
T ss_pred HHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCC-CHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHc
Confidence 9999988 59999999999999999999999999999999999 999999999999999999999999999988888899
Q ss_pred CchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCC--CCCCC
Q 022892 178 DPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAP--VDGPT 254 (290)
Q Consensus 178 dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~--~D~~~ 254 (290)
||+.|++||+ |++|||| |||+. | ..++.+|+++||+ |||||||+||++ +||.+
T Consensus 160 NL~~i~~L~~~f~~~vG~-SDHt~----------------g-----~~~~~~AvalGA~--vIEKHfTldr~~~g~Dh~~ 215 (241)
T PF03102_consen 160 NLRVIPTLKERFGVPVGY-SDHTD----------------G-----IEAPIAAVALGAR--VIEKHFTLDRNLKGPDHKF 215 (241)
T ss_dssp -TTHHHHHHHHSTSEEEE-EE-SS----------------S-----SHHHHHHHHTT-S--EEEEEB-S-TTSCSTTGCC
T ss_pred ChHHHHHHHHhcCCCEEe-CCCCC----------------C-----cHHHHHHHHcCCe--EEEEEEECCCCCCCCChhh
Confidence 9999999999 9999999 99996 5 6788999999997 999999999998 49999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCC
Q 022892 255 QWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 255 sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
|++|+||++||+.+|+++.++|+
T Consensus 216 Sl~p~el~~lv~~ir~~~~alG~ 238 (241)
T PF03102_consen 216 SLEPDELKQLVRDIREVEKALGS 238 (241)
T ss_dssp CB-HHHHHHHHHHHHHHHHHCSH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999997
No 18
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=100.00 E-value=1.8e-44 Score=341.15 Aligned_cols=223 Identities=20% Similarity=0.276 Sum_probs=193.6
Q ss_pred cCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCCC----------hhHHHHHH
Q 022892 12 KAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGPG----------MVEGLKIL 79 (290)
Q Consensus 12 ~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~~----------~~~~l~~L 79 (290)
|.+++++||||||||||.+++++||++|++++++.. .-.|+|.+|+| |||+ ++|+|++ +++||+++
T Consensus 49 g~d~rllvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~K-PRTs-~g~kGl~~DP~ldgs~~i~~GL~~~ 126 (349)
T PRK09261 49 GKDDRLLVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMRVYFEK-PRTT-VGWKGLINDPDLDGSFDINDGLRIA 126 (349)
T ss_pred CCCCCeEEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEEecccc-CCCC-CCCcCCCcCcCccccccHHHHHHHH
Confidence 368899999999999999999999999999988765 33699999998 9999 9999983 57999999
Q ss_pred HHH---HHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHH------
Q 022892 80 EKV---KIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSA------ 150 (290)
Q Consensus 80 ~~~---~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Av------ 150 (290)
+++ ..++|+|++||++|+..++|+.+++||++||||++.|+.+++.++++++||+||||+++++++|.+|+
T Consensus 127 R~ll~~~~e~GlpvatE~ld~~~~~y~~dlvs~~~IGARt~esq~hr~~asg~~~PVg~Kng~~g~i~~~l~Ai~aa~~~ 206 (349)
T PRK09261 127 RKLLLDINELGLPAATEFLDPITPQYIADLISWGAIGARTTESQVHRELASGLSCPVGFKNGTDGNIKVAIDAIIAASAP 206 (349)
T ss_pred HHHHHHHHHhCCCeEEEecccccHHHHHhhcceeeeccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHhHHHHHhCC
Confidence 999 59999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ------------HHHHHcCCCcEEEEeecCC-C-CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccC
Q 022892 151 ------------EKVRLAGNPNVMVCERGTM-F-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVAS 215 (290)
Q Consensus 151 ------------e~i~~~Gn~~i~L~~~gs~-~-~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~ 215 (290)
+++.+.||++++||+||.. + +|..++++....+..+. .+.||++||||++
T Consensus 207 H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~~pNy~~~~i~~~~~~l~k~~l~~~v~VD~SH~n--------------- 271 (349)
T PRK09261 207 HHFLGITKDGRSAIVSTTGNPDCHVILRGGNKGPNYDAESVAEAKERLEKAGLPPRIMIDCSHAN--------------- 271 (349)
T ss_pred ceeeecCCCCcEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCCCEEEECCCcc---------------
Confidence 6788999999999999993 4 58778899777766666 7889999999997
Q ss_pred CCCcccHH-----HHHHHHHHcCCC---EEEEeeeCCCCCCCCCCCCCCCh
Q 022892 216 GGLRELIP-----CIARTAIAVGVD---GVFMEVHDDPLNAPVDGPTQWPL 258 (290)
Q Consensus 216 ~g~~~~~~-----~~a~aAva~GA~---G~~IEkH~t~dka~~D~~~sl~p 258 (290)
+.+++.. ....++++.|++ |+|||+|+ .|++|++++
T Consensus 272 -s~k~~~~Q~~V~~~v~~qi~~G~~~I~GvMiES~l------~~G~Q~~~~ 315 (349)
T PRK09261 272 -SGKDHKRQPEVARDVAAQIAAGNKAIIGVMIESHL------VEGNQDLPP 315 (349)
T ss_pred -cCcchhhhHHHHHHHHHHHHcCCccceEEEEEEec------CcCCcCCCC
Confidence 2222222 223466888988 99999996 566666554
No 19
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=100.00 E-value=1.6e-41 Score=320.23 Aligned_cols=223 Identities=21% Similarity=0.282 Sum_probs=187.5
Q ss_pred cCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCC----------ChhHHHHHH
Q 022892 12 KAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGP----------GMVEGLKIL 79 (290)
Q Consensus 12 ~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~----------~~~~~l~~L 79 (290)
|.+++++||+|||||||.+++++||++|++++++.. ..+|+|.+|+| |||+++ |+|+ .+++||+++
T Consensus 44 g~d~rllvIvGPCSIhd~~~a~eyA~rLk~l~~~~~d~l~ivmR~y~eK-PRTt~G-WKGli~DP~ld~sf~i~~GL~~~ 121 (344)
T TIGR00034 44 GKDDRLLVVIGPCSIHDPEAAIEYATRLKALREELKDDLEIVMRVYFEK-PRTTVG-WKGLINDPDLNGSFRINHGLRIA 121 (344)
T ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhcceEEEEEecccc-CCCccc-cccccCCCCcCCCCCHHHHHHHH
Confidence 468899999999999999999999999999988765 44799999998 999943 3321 247999999
Q ss_pred HHHH---HhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHH---H--
Q 022892 80 EKVK---IAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSA---E-- 151 (290)
Q Consensus 80 ~~~~---~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Av---e-- 151 (290)
+++. .++|+|++||++|+...+|+.++++|.+||||++.|+.+.+.++++++||+||||+++++++|.+|+ +
T Consensus 122 R~ll~~i~~~GlPvatE~ld~~~~~y~~Dlisw~aIGARt~esq~hRelaSgl~~PVgfKngt~g~i~~al~Ai~aA~~~ 201 (344)
T TIGR00034 122 RKLLLDLVNLGLPIAGEFLDMISPQYLADLFSWGAIGARTTESQVHRELASGLSCPVGFKNGTDGNLQVAIDAIRAAAAP 201 (344)
T ss_pred HHHHHHHHHhCCCeEEEecCcCcHHHHHHHHhhccccCccccCHHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHHhCC
Confidence 9998 9999999999999999999999999999999999998665555689999999999999999999975 3
Q ss_pred -------------HHHHcCCCcEEEEeecCCC-CCCCCCCCchhHHHHHh-cCCC--EEEeCCCCCCCCCCCccCCCCcc
Q 022892 152 -------------KVRLAGNPNVMVCERGTMF-GYNDLIVDPRNLEWMRE-ANCP--VVADVTHSLQQPAGKKLDGGGVA 214 (290)
Q Consensus 152 -------------~i~~~Gn~~i~L~~~gs~~-~y~~~~~dL~~i~~lk~-~~~p--V~~D~sHs~~~~~~~~~~~~~~~ 214 (290)
++.+.||++++||+||.+. +|.. .|+...+.+.+ .++| |++||||++
T Consensus 202 H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~pNy~~--~di~~~~~~l~~~~lp~~vmVD~SH~n-------------- 265 (344)
T TIGR00034 202 HYFLSVTKDGQMAIVQTSGNPDGHIILRGGKKPNYSA--ADVAAAKKQLEKAGLPPHLMIDFSHGN-------------- 265 (344)
T ss_pred ceeeecCCCCcEEEEECCCCCCEEEEecCCCCCCCCH--HHHHHHHHHHHHcCCCCeEEEeCCCcc--------------
Confidence 3678999999999999863 4554 46677777666 8999 999999997
Q ss_pred CCCCcccHHHHHHH-----HHHcCCC---EEEEeeeCCCCCCCCCCCC
Q 022892 215 SGGLRELIPCIART-----AIAVGVD---GVFMEVHDDPLNAPVDGPT 254 (290)
Q Consensus 215 ~~g~~~~~~~~a~a-----Ava~GA~---G~~IEkH~t~dka~~D~~~ 254 (290)
+.+++...++++ +++.|++ |+|||+|+.+.++..+..+
T Consensus 266 --s~k~~~~q~~va~~v~~qi~~G~~~I~GvMiES~l~~G~Q~~~~~~ 311 (344)
T TIGR00034 266 --SNKDHRRQPDVAEDVCEQIANGSKAIIGVMIESNLVEGNQSIPGGQ 311 (344)
T ss_pred --cccchhhhHHHHHHHHHHHHcCCccceEEEEEecCCcCCCCCCCCC
Confidence 345554445554 5788886 9999999999998864433
No 20
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=100.00 E-value=2.7e-41 Score=319.31 Aligned_cols=224 Identities=21% Similarity=0.290 Sum_probs=187.0
Q ss_pred cCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCCC----------hhHHHHHH
Q 022892 12 KAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGPG----------MVEGLKIL 79 (290)
Q Consensus 12 ~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~~----------~~~~l~~L 79 (290)
|.+++++||+|||||||.+++++||++|++++++.. ...|+|.+|+| |||+ ++|+|+. +++||+++
T Consensus 50 g~d~rllvI~GPCSI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eK-PRT~-~gwkGli~DP~ldgs~~i~~GL~~~ 127 (353)
T PRK12755 50 GRDDRLLVVVGPCSIHDPEAALEYARRLKALADELSDRLLIVMRVYFEK-PRTT-VGWKGLINDPHLDGSFDIEEGLRIA 127 (353)
T ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhhhhcceEEEEEecccc-CCCC-cCCcCCCCCccccccccHHHHHHHH
Confidence 468899999999999999999999999999988765 44699999998 9999 6899873 47999998
Q ss_pred HHH---HHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH-----
Q 022892 80 EKV---KIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE----- 151 (290)
Q Consensus 80 ~~~---~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave----- 151 (290)
+++ ..++|+|++||++|+..++|+.++++|++||||++.|+.+++.++++++||+||||+++++++|.+|+.
T Consensus 128 R~ll~~~~e~Glp~atE~ld~~~~~y~~Dlvs~~aIGARt~esq~hre~aSgl~~PVgfKngt~g~i~~al~Ai~aa~~~ 207 (353)
T PRK12755 128 RKLLLDLVELGLPLATEALDPISPQYLGDLISWGAIGARTTESQTHREMASGLSMPVGFKNGTDGSLKVAINAIRAAAQP 207 (353)
T ss_pred HHHHHHHHHhCCCEEEEecCcccHHHHHhhhhheeeccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHHHHHHHhCC
Confidence 877 799999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred --------H-----HHHcCCCcEEEEeecCC-C-CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccC
Q 022892 152 --------K-----VRLAGNPNVMVCERGTM-F-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVAS 215 (290)
Q Consensus 152 --------~-----i~~~Gn~~i~L~~~gs~-~-~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~ 215 (290)
. +.+.||++.|||+||.. + +|..++++.......+. ...||++||||+++.. ..
T Consensus 208 H~fl~~~~~G~~~iv~t~GN~~~hliLRGg~~~pNy~~~~i~~a~~~l~k~~l~~~vmVD~SH~Ns~K----------~~ 277 (353)
T PRK12755 208 HRFLGINQEGQVALLETRGNPDGHVILRGGKKGPNYDAASVAACEAQLEKAGLRPRLMIDCSHANSGK----------DY 277 (353)
T ss_pred CeeeeeCCCCcEEEEECCCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCCcEEecCCcccccc----------ch
Confidence 2 78899999999999994 3 58778888655554444 5678999999997211 11
Q ss_pred CCCcccHHHHHHHHHHcCC---CEEEEeeeCCCCCC
Q 022892 216 GGLRELIPCIARTAIAVGV---DGVFMEVHDDPLNA 248 (290)
Q Consensus 216 ~g~~~~~~~~a~aAva~GA---~G~~IEkH~t~dka 248 (290)
..+.. +.....+.++.|+ +|+|||+|+...+.
T Consensus 278 ~~Q~~-V~~~v~~qi~~G~~~I~GvMiES~l~~G~Q 312 (353)
T PRK12755 278 RRQPA-VAEDVVAQIAAGNRSIIGVMIESHLEEGNQ 312 (353)
T ss_pred hhhHH-HHHHHHHHHHcCCCceEEEEEEEeccccCc
Confidence 11111 2223345677887 99999999865554
No 21
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=100.00 E-value=6.7e-38 Score=295.13 Aligned_cols=221 Identities=16% Similarity=0.207 Sum_probs=187.7
Q ss_pred cCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCCC----------hhHHHHHH
Q 022892 12 KAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGPG----------MVEGLKIL 79 (290)
Q Consensus 12 ~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~~----------~~~~l~~L 79 (290)
|.+++++||+|||||||.+++++||++|++++++.. +.+|+|.+|+| |||+++ |+|+. +++||+++
T Consensus 49 g~d~rllvIvGPCSIhd~~~aleyA~rLk~l~~~~~d~l~ivmR~y~eK-PRTs~g-wkGl~~DP~ldgs~~i~~GL~i~ 126 (356)
T PRK12822 49 GKDPRLLVIIGPCSIHDPQAALEYAKRLAVLQHQYLDQLYIVMRTYFEK-PRTRKG-WKGLIFDPDLDGSNDIEKGLRLA 126 (356)
T ss_pred CCCCCeEEEEcCCcCCCHHHHHHHHHHHHHHHHhhcccEEEEEEecccc-CCCCCC-ccccccCCCCCCCccHHHHHHHH
Confidence 468999999999999999999999999999988875 56799999998 999986 99872 36999999
Q ss_pred HHH---HHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH-----
Q 022892 80 EKV---KIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE----- 151 (290)
Q Consensus 80 ~~~---~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave----- 151 (290)
+++ ..++|+|++||++|+...+|+.|+++|.+||||++.|+.+++.++++++||+||||++++++...+|+.
T Consensus 127 R~ll~~~~~~GlPvatE~ld~~~~qy~~Dlisw~aIGARt~esq~hrelaSgls~PVgfKngt~g~i~~AidAi~aa~~p 206 (356)
T PRK12822 127 RQLLLSINTLGLATATEFLDTTSFPYIADLICWGAIGARTTESQVHRQLASALPCPVGFKNGTDGNIRIAIDAILAARSP 206 (356)
T ss_pred HHHHHHHHHhCCCEEEeecccccHHHHHHHHHhhhhccchhcCHHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHHcCC
Confidence 988 799999999999999999999999999999999999999988899999999999999999999999986
Q ss_pred -------------HHHHcCCCcEEEEeecCC-CCCCCCCCCchhHHHHHhcCCC--EEEeCCCCCCCCCCCccCCCCccC
Q 022892 152 -------------KVRLAGNPNVMVCERGTM-FGYNDLIVDPRNLEWMREANCP--VVADVTHSLQQPAGKKLDGGGVAS 215 (290)
Q Consensus 152 -------------~i~~~Gn~~i~L~~~gs~-~~y~~~~~dL~~i~~lk~~~~p--V~~D~sHs~~~~~~~~~~~~~~~~ 215 (290)
++.+.||++.|+++||.+ ++|..++++ .+...|++.+++ |++||||+|.
T Consensus 207 H~Fl~i~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~-~a~~~l~~~~l~~~vmVDcSH~NS-------------- 271 (356)
T PRK12822 207 HLVTVPGLTGCISTLLSDGNPHGHIILRGGREPNYGLSDVT-KASKLLHDEGLNHRLIIDCSHGNS-------------- 271 (356)
T ss_pred CeEEecCCCCcEEEEEcCCCCCceEEEeCCCCCCCCHHHHH-HHHHHHHHCCCCCcEEEECCCccC--------------
Confidence 367889999999999986 457766676 567778776663 8999999972
Q ss_pred CCCcccHHHHHHHH---HHcC---CCEEEEeeeCCCCCCC
Q 022892 216 GGLRELIPCIARTA---IAVG---VDGVFMEVHDDPLNAP 249 (290)
Q Consensus 216 ~g~~~~~~~~a~aA---va~G---A~G~~IEkH~t~dka~ 249 (290)
+..+..++.++... ++.| +.|+|||+|+...+..
T Consensus 272 ~K~~~~Q~~V~~~v~~q~~~g~~~I~GvMiES~L~~G~Q~ 311 (356)
T PRK12822 272 QKVAKNQISVARELCDQLKEGEGAIAGVMVESFLQGGSQK 311 (356)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCeEEEEEEeecccccCCC
Confidence 12333333333321 3344 8999999999887764
No 22
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=100.00 E-value=3e-36 Score=283.63 Aligned_cols=221 Identities=17% Similarity=0.236 Sum_probs=184.5
Q ss_pred cCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCC----------ChhHHHHHH
Q 022892 12 KAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGP----------GMVEGLKIL 79 (290)
Q Consensus 12 ~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~----------~~~~~l~~L 79 (290)
|.+++++||+|||||||.+++++||++|++++++.. ..+|+|.+|+| |||+++ |+|+ .+++||+++
T Consensus 48 g~d~rllvIvGPCSIhd~~~a~eyA~rL~~l~~~~~d~l~ivmR~y~eK-PRTt~g-WKGli~DP~ldgsf~i~~GL~~~ 125 (348)
T PRK12756 48 GEDPRLLVIIGPCSIHDTDAALDYATRLAALREQYQDRLEIVMRTYFEK-PRTVVG-WKGLISDPDLDGSYRVNHGLELA 125 (348)
T ss_pred CCCCceEEEecCCcCCCHHHHHHHHHHHHHHHHHhhccEEEEEEecccc-CCCCcc-cccccCCCCCCCCccHHHHHHHH
Confidence 468899999999999999999999999999988875 55799999998 999987 5543 246889987
Q ss_pred HHHH---HhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH----
Q 022892 80 EKVK---IAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK---- 152 (290)
Q Consensus 80 ~~~~---~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~---- 152 (290)
+++. .++|+|++||++|+...+|+.|+++|.+||||++.|+.+++.++++++||+||||++++++.+.+|+..
T Consensus 126 R~ll~~i~~~GlP~atE~ld~~~~qY~~DliSwgaIGARt~esq~hre~ASgls~PVgfKN~t~g~i~~aidAi~aa~~~ 205 (348)
T PRK12756 126 RKLLLQINELGLPTATEFLDMVTGQYIADLISWGAIGARTTESQIHREMASALSCPVGFKNGTDGNTRIAIDAIRAARAS 205 (348)
T ss_pred HHHHHHHHHcCCceeehhcccccHHHHHHHHhhhhhccccccCHHHHHHHhcCCCceEecCCCCCCHHHHHHHHHHHhCC
Confidence 7777 899999999999999999999999999999999999998888999999999999999999999999863
Q ss_pred --------------HHHcCCCcEEEEeecCC-CCCCCCCCCchhHHHHHhcCCC--EEEeCCCCCCCCCCCccCCCCccC
Q 022892 153 --------------VRLAGNPNVMVCERGTM-FGYNDLIVDPRNLEWMREANCP--VVADVTHSLQQPAGKKLDGGGVAS 215 (290)
Q Consensus 153 --------------i~~~Gn~~i~L~~~gs~-~~y~~~~~dL~~i~~lk~~~~p--V~~D~sHs~~~~~~~~~~~~~~~~ 215 (290)
+.+.||++.|+++||.+ ++|..+++. .+...|++.++| |++||||+|.
T Consensus 206 H~Fl~~~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~-~a~~~l~~~~l~~~imVDcSH~NS-------------- 270 (348)
T PRK12756 206 HMFLSPDKDGQMTIYQTSGNPYGHIIMRGGKKPNYHAEDIA-AACDTLREFDLPEHLVVDFSHGNC-------------- 270 (348)
T ss_pred CeeEeeCCCCcEEEEEcCCCCCeEEEeeCCCCCCCCHHHHH-HHHHHHHHCCCCCcEEEECCCccc--------------
Confidence 67889999999999986 467776676 577778776663 8999999972
Q ss_pred CCCcccHHHHHHHH---HHc---CCCEEEEeeeCCCCCCC
Q 022892 216 GGLRELIPCIARTA---IAV---GVDGVFMEVHDDPLNAP 249 (290)
Q Consensus 216 ~g~~~~~~~~a~aA---va~---GA~G~~IEkH~t~dka~ 249 (290)
+..+..++.++... ++. .+.|+|||+|+...+..
T Consensus 271 ~K~~~~Q~~V~~~v~~qi~~g~~~I~GvMiES~L~~G~Q~ 310 (348)
T PRK12756 271 QKQHRRQLDVAEDICQQIRNGSTAIAGIMAESFLREGTQK 310 (348)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCeEEEEEEeecccccCCC
Confidence 23333333333321 233 48899999999877764
No 23
>COG0722 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-33 Score=259.23 Aligned_cols=220 Identities=23% Similarity=0.323 Sum_probs=181.2
Q ss_pred cCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCC----------ChhHHHHHH
Q 022892 12 KAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGP----------GMVEGLKIL 79 (290)
Q Consensus 12 ~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~----------~~~~~l~~L 79 (290)
|.|+|++||.|||||||.+.++|||+||+.+++++- ..+|||.||+| |||+.+ |+|+ .+.+||+..
T Consensus 49 G~DdRLlvViGPCSiHD~~AAleYA~RL~~l~e~~~d~L~iVMRvYfeK-PRTtVG-WKGLInDP~ldgsf~i~~GL~~a 126 (351)
T COG0722 49 GEDDRLLVVIGPCSIHDPEAALEYARRLKALREELKDRLEIVMRVYFEK-PRTTVG-WKGLINDPDLDGSFDINKGLRIA 126 (351)
T ss_pred CCCCcEEEEEeCCccCCHHHHHHHHHHHHHHHHHhhCceEEEEEEeecC-Cccccc-ccccccCCCCCCCccHHHHHHHH
Confidence 478999999999999999999999999999999987 66899999998 999976 7764 346888876
Q ss_pred HHHH---HhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH-----
Q 022892 80 EKVK---IAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE----- 151 (290)
Q Consensus 80 ~~~~---~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave----- 151 (290)
+++. .++|+|..||.+|+.+.+|++++++|..||+|+..+.-..+.++.+++||.||||++|++.-+.+|+.
T Consensus 127 R~Ll~~v~e~Glp~AtE~Ld~ispqy~aDLiSwgAIGARTtESQ~HRe~ASGLs~PvGFKNgTdGnl~vAidAi~AA~~~ 206 (351)
T COG0722 127 RKLLLDVNELGLPTATEFLDPISPQYLADLISWGAIGARTTESQIHRELASGLSCPVGFKNGTDGNLKVAIDAIRAAAHP 206 (351)
T ss_pred HHHHHHHHhcCCchhHHHhccCcHHHHHHHHHHhhccccchhhHHHHHHhhccCCCccccCCCCccHHHHHHHHHHhhCC
Confidence 6655 89999999999999999999999999999999997655445577899999999999999999999876
Q ss_pred -------------HHHHcCCCcEEEEeecCC--CCCCCCCCCchhHHHHHhcCCC--EEEeCCCCCCCCCCCccCCCCcc
Q 022892 152 -------------KVRLAGNPNVMVCERGTM--FGYNDLIVDPRNLEWMREANCP--VVADVTHSLQQPAGKKLDGGGVA 214 (290)
Q Consensus 152 -------------~i~~~Gn~~i~L~~~gs~--~~y~~~~~dL~~i~~lk~~~~p--V~~D~sHs~~~~~~~~~~~~~~~ 214 (290)
++.+.||++.|++.||.. ++|...++. .+...|++++++ +++|+||.|+
T Consensus 207 H~Fl~~~k~G~~aiv~T~GNp~~HvILRGG~~~PNYda~~v~-~~~~~l~~~gl~~~lmID~SH~NS------------- 272 (351)
T COG0722 207 HHFLSVTKDGQVAIVETSGNPDGHVILRGGKKGPNYDAASVA-AACEQLEKAGLPPRLMIDCSHANS------------- 272 (351)
T ss_pred ceeeecCCCCceEEEEccCCCCceEEecCCCCCCCCCHHHHH-HHHHHHHHcCCCCeEEEeccCCcc-------------
Confidence 356789999999999994 678776665 577788888875 8899999972
Q ss_pred CCCCcccHHHHHHHH---HHcC---CCEEEEeeeCCCCCC
Q 022892 215 SGGLRELIPCIARTA---IAVG---VDGVFMEVHDDPLNA 248 (290)
Q Consensus 215 ~~g~~~~~~~~a~aA---va~G---A~G~~IEkH~t~dka 248 (290)
+.++..++.+++.. ++.| +.|+|||+|+...+.
T Consensus 273 -~K~~~~Q~~V~~~v~~Qi~~G~~~I~GvMiES~L~eG~Q 311 (351)
T COG0722 273 -GKDYRRQPKVARDVCQQIAAGERAIRGVMIESHLVEGRQ 311 (351)
T ss_pred -ccChhhhHHHHHHHHHHHhcCCceeEEEEehhhhhhcCc
Confidence 12233334444432 3445 789999999976664
No 24
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=97.94 E-value=0.0031 Score=59.13 Aligned_cols=226 Identities=17% Similarity=0.142 Sum_probs=135.0
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCC-Cc--------c------cCCCCChhH
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRT-SS--------K------SFRGPGMVE 74 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rt-s~--------~------~~~g~~~~~ 74 (290)
.+...+|+.+=|||... | .+.++++.+ .|+.+|.-.++..+||. .+ . .|...|++.
T Consensus 8 G~~~~nPv~~aag~~~~-~----~~~~~~~~~----~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~ 78 (301)
T PRK07259 8 GLKLKNPVMPASGTFGF-G----GEYARFYDL----NGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDA 78 (301)
T ss_pred CEECCCCcEECCcCCCC-C----HHHHHHhhh----cCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHH
Confidence 56677887666776642 2 255555544 58877666666544553 11 1 122234445
Q ss_pred HHHHHHHHHHhcCCcEEEeecCc--ccHHH----Hhhh--cceecc----------cCCccCCHHHH----HHHHh-cCC
Q 022892 75 GLKILEKVKIAYDIPIVTDVHET--VQCEE----VGKV--ADIIQI----------PAFLCRQTDLL----VAAAK-TGK 131 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi~~~s~~~d~--~~~~~----l~~~--~d~~kI----------gs~~~~n~~lL----~~~a~-~~~ 131 (290)
.++.+.+..++.++|++.++.-. ++... +.+. +|++-| |.....+.+++ +++-+ ..+
T Consensus 79 ~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~ 158 (301)
T PRK07259 79 FIEEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKV 158 (301)
T ss_pred HHHHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCC
Confidence 66667776677899999998643 32222 2232 677766 33444555544 44433 389
Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----------------CC---CCCCCCchhHHHHHh-cCCC
Q 022892 132 IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF----------------GY---NDLIVDPRNLEWMRE-ANCP 191 (290)
Q Consensus 132 PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~----------------~y---~~~~~dL~~i~~lk~-~~~p 191 (290)
||.+|-+. +.+++.+.++.+.+.|-+-+++..+...+ ++ ......++.+..+++ .++|
T Consensus 159 pv~vKl~~--~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ip 236 (301)
T PRK07259 159 PVIVKLTP--NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIP 236 (301)
T ss_pred CEEEEcCC--CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCC
Confidence 99999875 46788888888888887667665432110 01 001235677777877 7899
Q ss_pred EEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 192 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 192 V~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
|+....=. . ..-+...++.||++++|=+-+ .. +|.-++++.+.+...
T Consensus 237 vi~~GGI~-----------------~-----~~da~~~l~aGAd~V~igr~l----------l~-~P~~~~~i~~~l~~~ 283 (301)
T PRK07259 237 IIGMGGIS-----------------S-----AEDAIEFIMAGASAVQVGTAN----------FY-DPYAFPKIIEGLEAY 283 (301)
T ss_pred EEEECCCC-----------------C-----HHHHHHHHHcCCCceeEcHHH----------hc-CcHHHHHHHHHHHHH
Confidence 98732211 1 344556677899987775543 12 577788888777665
Q ss_pred HHHhCCcc
Q 022892 272 AKVSKGKQ 279 (290)
Q Consensus 272 ~~~lg~~~ 279 (290)
-...|.++
T Consensus 284 ~~~~g~~~ 291 (301)
T PRK07259 284 LDKYGIKS 291 (301)
T ss_pred HHHcCCCC
Confidence 55555433
No 25
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.89 E-value=0.0038 Score=58.25 Aligned_cols=225 Identities=16% Similarity=0.160 Sum_probs=130.6
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC-CCEEeccccccCCCC---Ccc------------cCCCCChh
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG-LPLVFKSSFDKANRT---SSK------------SFRGPGMV 73 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G-~~~V~~~~~~k~~rt---s~~------------~~~g~~~~ 73 (290)
.+...+|+.+=||+.. |.+. .+++.+ .| +.+|.-.+...+|+. .|. .+...+.+
T Consensus 6 G~~~~nP~~~aag~~~--~~~~----~~~~~~----~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~ 75 (296)
T cd04740 6 GLRLKNPVILASGTFG--FGEE----LSRVAD----LGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVE 75 (296)
T ss_pred CEEcCCCCEECCCCCC--CHHH----HHHHHh----cCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHH
Confidence 4556778766667764 3332 223333 24 777665555544543 111 12223445
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHH------HHhh-hcceecc----------cCCccCCHHH----HHHHHhc-CC
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCE------EVGK-VADIIQI----------PAFLCRQTDL----LVAAAKT-GK 131 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~------~l~~-~~d~~kI----------gs~~~~n~~l----L~~~a~~-~~ 131 (290)
..++.+++..++.+.|++..++-...-+ .+.+ .+|++-| |+....+..+ ++++-+. ++
T Consensus 76 ~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~ 155 (296)
T cd04740 76 AFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDV 155 (296)
T ss_pred HHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCC
Confidence 6677777776778899999986542212 2223 2677766 3334455554 4444443 89
Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-------------------CCCCCCCCchhHHHHHh-cCCC
Q 022892 132 IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-------------------GYNDLIVDPRNLEWMRE-ANCP 191 (290)
Q Consensus 132 PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-------------------~y~~~~~dL~~i~~lk~-~~~p 191 (290)
||.+|-+. +.+|+.+.++.+...|-+-+.+..+...+ +.......++.+..+++ .++|
T Consensus 156 Pv~vKl~~--~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ip 233 (296)
T cd04740 156 PVIVKLTP--NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIP 233 (296)
T ss_pred CEEEEeCC--CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCC
Confidence 99999764 46678887887888887666665432110 01111234567777777 7899
Q ss_pred EEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 192 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 192 V~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
|+....-. . ..-+..++.+||++++|=+-+. .+|.-+.++.+.+.+.
T Consensus 234 ii~~GGI~-----------------~-----~~da~~~l~~GAd~V~igra~l-----------~~p~~~~~i~~~l~~~ 280 (296)
T cd04740 234 IIGVGGIA-----------------S-----GEDALEFLMAGASAVQVGTANF-----------VDPEAFKEIIEGLEAY 280 (296)
T ss_pred EEEECCCC-----------------C-----HHHHHHHHHcCCCEEEEchhhh-----------cChHHHHHHHHHHHHH
Confidence 98732211 1 3445667789999888765541 2577788888777765
Q ss_pred HHHhCCcc
Q 022892 272 AKVSKGKQ 279 (290)
Q Consensus 272 ~~~lg~~~ 279 (290)
-...|-++
T Consensus 281 ~~~~g~~~ 288 (296)
T cd04740 281 LDEEGIKS 288 (296)
T ss_pred HHHcCCCC
Confidence 55555433
No 26
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.73 E-value=0.003 Score=56.59 Aligned_cols=173 Identities=15% Similarity=0.145 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~ 107 (290)
...++|+.+.+ .|++.+.....+. .+.+.+ ..+..+++.++..++|+.. -+.++++++.+.+ .+
T Consensus 30 dp~~~a~~~~~----~g~d~l~v~dl~~-------~~~~~~--~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Ga 96 (234)
T cd04732 30 DPVEVAKKWEE----AGAKWLHVVDLDG-------AKGGEP--VNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGV 96 (234)
T ss_pred CHHHHHHHHHH----cCCCEEEEECCCc-------cccCCC--CCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCC
Confidence 45788888887 5988776653331 122222 3467788888888899888 7788888887766 69
Q ss_pred ceecccCCccCCHHHHHHHHh-cCC-eEEEeCC--------------CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Q 022892 108 DIIQIPAFLCRQTDLLVAAAK-TGK-IINIKKG--------------QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFG 171 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~-~~~-PVilstG--------------~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~ 171 (290)
|.+-||+..+.|.++++++.+ .+. +|+++-. ...++.|+ ++.+...|-..+++.++...-.
T Consensus 97 d~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ga~~iii~~~~~~g~ 173 (234)
T cd04732 97 SRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEEL---AKRFEELGVKAIIYTDISRDGT 173 (234)
T ss_pred CEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHH---HHHHHHcCCCEEEEEeecCCCc
Confidence 999999999999998888765 455 5666521 12234443 4455667777777766543211
Q ss_pred CCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 172 YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 172 y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
+. -.|+..+..+++ .++||++.. |.+. ..-...+...||+|+|+=+-+
T Consensus 174 ~~--g~~~~~i~~i~~~~~ipvi~~G--------------------Gi~~--~~di~~~~~~Ga~gv~vg~~~ 222 (234)
T cd04732 174 LS--GPNFELYKELAAATGIPVIASG--------------------GVSS--LDDIKALKELGVAGVIVGKAL 222 (234)
T ss_pred cC--CCCHHHHHHHHHhcCCCEEEec--------------------CCCC--HHHHHHHHHCCCCEEEEeHHH
Confidence 21 257788888888 789998732 2111 222334456799999997766
No 27
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=97.68 E-value=0.0058 Score=57.22 Aligned_cols=227 Identities=16% Similarity=0.163 Sum_probs=127.5
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCC---c------c------cCCCCChhH
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTS---S------K------SFRGPGMVE 74 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts---~------~------~~~g~~~~~ 74 (290)
.+...+|+++=+|+... + -+..+++.+ .|+.+|.-.+...+||.. | . .+...+.+.
T Consensus 7 g~~l~npi~~aag~~~~-~----~~~~~~~~~----~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~ 77 (300)
T TIGR01037 7 GIRFKNPLILASGIMGS-G----VESLRRIDR----SGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEA 77 (300)
T ss_pred CEECCCCCEeCCcCCCC-C----HHHHHHHHH----cCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHH
Confidence 45556775555566431 2 233333433 487766555544334321 0 0 122224456
Q ss_pred HHHHHHHHHHhcCCcEEEeecC--cccHHHHhh-------hcceecc----------cCCccCCHHHH----HHHH-hcC
Q 022892 75 GLKILEKVKIAYDIPIVTDVHE--TVQCEEVGK-------VADIIQI----------PAFLCRQTDLL----VAAA-KTG 130 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi~~~s~~~d--~~~~~~l~~-------~~d~~kI----------gs~~~~n~~lL----~~~a-~~~ 130 (290)
.++.+++..++.+.|++..++- ++.+..+.+ .+|++-| |+....+.+++ +++- ..+
T Consensus 78 ~~~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~ 157 (300)
T TIGR01037 78 FLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTD 157 (300)
T ss_pred HHHHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcC
Confidence 6777777788889999999854 333222222 1344433 23334555554 4443 358
Q ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----------------CCCC---CCCCchhHHHHHh-cCC
Q 022892 131 KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF----------------GYND---LIVDPRNLEWMRE-ANC 190 (290)
Q Consensus 131 ~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~----------------~y~~---~~~dL~~i~~lk~-~~~ 190 (290)
+||.+|-.. +.+++...++.+...|-+-+++..+...+ +|.. ..+.++.+..+++ .++
T Consensus 158 ~pv~vKi~~--~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~i 235 (300)
T TIGR01037 158 VPVFAKLSP--NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDI 235 (300)
T ss_pred CCEEEECCC--ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCC
Confidence 999999874 57788888888888887666554221000 0110 0123456667777 789
Q ss_pred CEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 191 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 191 pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
||+....-. . +.-+...+..||++++|=+-+. .+|.-+.++.+.+++
T Consensus 236 pvi~~GGI~-----------------s-----~~da~~~l~~GAd~V~igr~~l-----------~~p~~~~~i~~~l~~ 282 (300)
T TIGR01037 236 PIIGVGGIT-----------------S-----FEDALEFLMAGASAVQVGTAVY-----------YRGFAFKKIIEGLIA 282 (300)
T ss_pred CEEEECCCC-----------------C-----HHHHHHHHHcCCCceeecHHHh-----------cCchHHHHHHHHHHH
Confidence 998732221 1 3445666778999888765542 235677788888777
Q ss_pred HHHHhCCccc
Q 022892 271 IAKVSKGKQR 280 (290)
Q Consensus 271 ~~~~lg~~~~ 280 (290)
.-...|-+++
T Consensus 283 ~~~~~g~~~~ 292 (300)
T TIGR01037 283 FLKAEGFTSI 292 (300)
T ss_pred HHHHcCCCCH
Confidence 6666665443
No 28
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.66 E-value=0.0075 Score=57.63 Aligned_cols=229 Identities=19% Similarity=0.189 Sum_probs=125.1
Q ss_pred CCchhhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCC-------------cc--
Q 022892 1 MDPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTS-------------SK-- 65 (290)
Q Consensus 1 ~~~~~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts-------------~~-- 65 (290)
||-++.+ -.+...+|+++-+||..- + .+..+++.+ .|+-+|..-+...+||.. +.
T Consensus 1 ~~l~~~~-~Gl~l~nPv~~asg~~~~-~----~~~~~~~~~----~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~ 70 (334)
T PRK07565 1 MDLSTTY-LGLTLRNPLVASASPLSE-S----VDNVKRLED----AGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFA 70 (334)
T ss_pred CCceEEE-CCEecCCCCEecCcCCCC-C----HHHHHHHHH----CCCeEEEEeeCCHHHhhccccccccccccCCCcch
Confidence 3444443 357778898888888851 2 233334333 465543332333333311 00
Q ss_pred ---------cCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHH------HHhh-hcceeccc-----CC------cc-
Q 022892 66 ---------SFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCE------EVGK-VADIIQIP-----AF------LC- 117 (290)
Q Consensus 66 ---------~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~------~l~~-~~d~~kIg-----s~------~~- 117 (290)
.+...|++..++.+.+..++.++|++..++-...-+ .+.+ .+|++.|- .. +.
T Consensus 71 ~~~~~~n~~gl~n~g~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~ 150 (334)
T PRK07565 71 EALDYFPEPAKFYVGPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVE 150 (334)
T ss_pred hhhhhhhhhhccCcCHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHH
Confidence 122334456666777777778899999996644332 2223 36777761 11 00
Q ss_pred -CCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCC----------------CCCc
Q 022892 118 -RQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDL----------------IVDP 179 (290)
Q Consensus 118 -~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~----------------~~dL 179 (290)
.-.++++++.+ +++||++|-+.. .+++...++.+...|-.-|++..+......+.. ..-+
T Consensus 151 ~~~~eil~~v~~~~~iPV~vKl~p~--~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al 228 (334)
T PRK07565 151 QRYLDILRAVKSAVSIPVAVKLSPY--FSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPL 228 (334)
T ss_pred HHHHHHHHHHHhccCCcEEEEeCCC--chhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHH
Confidence 01255676654 589999996543 456777777788888877777666422111000 0113
Q ss_pred hhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCCh
Q 022892 180 RNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPL 258 (290)
Q Consensus 180 ~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p 258 (290)
+.+..+++ .++||+... |.+. ..-+...+.+||+++.|=+-+- .++ |
T Consensus 229 ~~v~~~~~~~~ipIig~G--------------------GI~s--~~Da~e~l~aGA~~V~v~t~~~-----~~g-----~ 276 (334)
T PRK07565 229 RWIAILSGRVGADLAATT--------------------GVHD--AEDVIKMLLAGADVVMIASALL-----RHG-----P 276 (334)
T ss_pred HHHHHHHhhcCCCEEEEC--------------------CCCC--HHHHHHHHHcCCCceeeehHHh-----hhC-----c
Confidence 44555555 678987622 2111 1224455679999887765431 121 4
Q ss_pred HHHHHHHHHHHHHHH
Q 022892 259 RNLEELLEELVAIAK 273 (290)
Q Consensus 259 ~~l~~lv~~ir~~~~ 273 (290)
+-++++.+.|++.-.
T Consensus 277 ~~~~~i~~~L~~~l~ 291 (334)
T PRK07565 277 DYIGTILRGLEDWME 291 (334)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666665444
No 29
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=97.59 E-value=0.0062 Score=56.52 Aligned_cols=201 Identities=15% Similarity=0.159 Sum_probs=113.8
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCC---c---------------cc-----
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTS---S---------------KS----- 66 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts---~---------------~~----- 66 (290)
.+...+|+.+=|||.. ...++.+.+.+ +|+.+|.-.+....|+.. | .+
T Consensus 5 G~~~~nPv~~aag~~~-----~~~~~~~~~~~----~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~ 75 (289)
T cd02810 5 GLKLKNPFGVAAGPLL-----KTGELIARAAA----AGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSF 75 (289)
T ss_pred CEECCCCCEeCCCCCC-----CCHHHHHHHHH----cCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecC
Confidence 4566788888888884 12344444444 576654443333223311 1 00
Q ss_pred -CCCCChhHHHHHHHHHHHh-cCCcEEEeecC--cccH----HHHhhh-cceecccCC---------ccCCHH----HHH
Q 022892 67 -FRGPGMVEGLKILEKVKIA-YDIPIVTDVHE--TVQC----EEVGKV-ADIIQIPAF---------LCRQTD----LLV 124 (290)
Q Consensus 67 -~~g~~~~~~l~~L~~~~~~-~Gi~~~s~~~d--~~~~----~~l~~~-~d~~kIgs~---------~~~n~~----lL~ 124 (290)
+...+.+..++++.+..+. .+.+++..+.- +++. +.+.+. +|++-|--. ..++.. +++
T Consensus 76 g~~~~g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~ 155 (289)
T cd02810 76 GLPNLGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLK 155 (289)
T ss_pred CCCCcCHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHH
Confidence 1222334556666666655 58999998874 3332 223332 666655211 123443 345
Q ss_pred HHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----------------CC---CCCCCCchhHHH
Q 022892 125 AAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF----------------GY---NDLIVDPRNLEW 184 (290)
Q Consensus 125 ~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~----------------~y---~~~~~dL~~i~~ 184 (290)
++.+ .++||++|-+...+.+|+...++.+...|-+-+++..+.... +| +.....++.+..
T Consensus 156 ~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~ 235 (289)
T cd02810 156 AVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVAR 235 (289)
T ss_pred HHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHH
Confidence 5543 489999999887788899999999998887656554432110 00 001124566777
Q ss_pred HHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 185 MRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 185 lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
+++ . ++||+....=. . ..-+...+++||+++++=+
T Consensus 236 i~~~~~~~ipiia~GGI~-----------------~-----~~da~~~l~~GAd~V~vg~ 273 (289)
T cd02810 236 LAARLQLDIPIIGVGGID-----------------S-----GEDVLEMLMAGASAVQVAT 273 (289)
T ss_pred HHHhcCCCCCEEEECCCC-----------------C-----HHHHHHHHHcCccHheEcH
Confidence 777 6 79997621111 1 3345566778999877644
No 30
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.50 E-value=0.027 Score=49.43 Aligned_cols=178 Identities=16% Similarity=0.107 Sum_probs=105.2
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeec
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVH 95 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~ 95 (290)
++|+|..+....+ +...+..+++.+ .|+++|-....+ ..+....+.++.+.+.|+.+|++++..
T Consensus 8 ~~~~it~~~~~~~-~~~~~~~~~~~~----~gv~~v~lr~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 71 (212)
T PRK00043 8 RLYLITDSRDDSG-RDLLEVVEAALE----GGVTLVQLREKG---------LDTRERLELARALKELCRRYGVPLIVN-- 71 (212)
T ss_pred CEEEEECCccccc-ccHHHHHHHHHh----cCCCEEEEeCCC---------CCHHHHHHHHHHHHHHHHHhCCeEEEe--
Confidence 5788887654212 224444555544 598887332111 011112356677888889999998875
Q ss_pred CcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec----CCC
Q 022892 96 ETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG----TMF 170 (290)
Q Consensus 96 d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~g----s~~ 170 (290)
+.++.+.+ .++.+-+++.+.. ...++..-..++.+.+++. |.+|+..|.+ .|-+.+ .+... +..
T Consensus 72 --~~~~~a~~~gad~vh~~~~~~~-~~~~~~~~~~~~~~g~~~~---t~~e~~~a~~----~gaD~v-~~~~~~~~~~~~ 140 (212)
T PRK00043 72 --DRVDLALAVGADGVHLGQDDLP-VADARALLGPDAIIGLSTH---TLEEAAAALA----AGADYV-GVGPIFPTPTKK 140 (212)
T ss_pred --ChHHHHHHcCCCEEecCcccCC-HHHHHHHcCCCCEEEEeCC---CHHHHHHHhH----cCCCEE-EECCccCCCCCC
Confidence 45676666 6898888776433 2333444455677888775 7888887754 455444 33211 111
Q ss_pred CCCCCCCCchhHHHHHh-cC-CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 171 GYNDLIVDPRNLEWMRE-AN-CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 171 ~y~~~~~dL~~i~~lk~-~~-~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
++. ....+..+..+++ ++ +||..+.--+ ..-...+.++||+|+++-+-+.
T Consensus 141 ~~~-~~~g~~~~~~~~~~~~~~~v~a~GGI~-----------------------~~~i~~~~~~Ga~gv~~gs~i~ 192 (212)
T PRK00043 141 DAK-APQGLEGLREIRAAVGDIPIVAIGGIT-----------------------PENAPEVLEAGADGVAVVSAIT 192 (212)
T ss_pred CCC-CCCCHHHHHHHHHhcCCCCEEEECCcC-----------------------HHHHHHHHHcCCCEEEEeHHhh
Confidence 111 1123677888877 66 9998742111 2334567889999999988774
No 31
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=97.30 E-value=0.062 Score=50.61 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHH----HHHHHHHhcCCcEEEeecCcccHHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLK----ILEKVKIAYDIPIVTDVHETVQCEEV 103 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~----~L~~~~~~~Gi~~~s~~~d~~~~~~l 103 (290)
+.+..++.|+++++. ||++|=-..-. |.|++ .....++.++ .++.+.++.++++--+-++++.++..
T Consensus 36 ~~~~a~~~a~~~~~~----GAdIIDIGgeS----TrPg~-~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~~~~va~~A 106 (282)
T PRK11613 36 SLIDAVKHANLMINA----GATIIDVGGES----TRPGA-AEVSVEEELDRVIPVVEAIAQRFEVWISVDTSKPEVIRES 106 (282)
T ss_pred CHHHHHHHHHHHHHC----CCcEEEECCCC----CCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHH
Confidence 568889999999884 99998665332 22321 1122233333 34555566799998899999999887
Q ss_pred hh-hccee-cccCCccCCHHHHHHHHhcCCeEEEeC--CCCCC--------------HHHHHHHHHHHHHcCCC-cEEEE
Q 022892 104 GK-VADII-QIPAFLCRQTDLLVAAAKTGKIINIKK--GQFCA--------------SSVMVNSAEKVRLAGNP-NVMVC 164 (290)
Q Consensus 104 ~~-~~d~~-kIgs~~~~n~~lL~~~a~~~~PVilst--G~~~t--------------l~e~~~Ave~i~~~Gn~-~i~L~ 164 (290)
.+ .++++ -|.+. +...+++.+++.+.|+++-- |...+ ...+.+.++.+.+.|-. +=+++
T Consensus 107 L~~GadiINDI~g~--~d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~Iil 184 (282)
T PRK11613 107 AKAGAHIINDIRSL--SEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLL 184 (282)
T ss_pred HHcCCCEEEECCCC--CCHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEE
Confidence 66 68876 34443 34567788899999988853 22112 13445666777778843 34667
Q ss_pred eecCCCCCCCCCCCc---hhHHHHHhcCCCEEEeCC
Q 022892 165 ERGTMFGYNDLIVDP---RNLEWMREANCPVVADVT 197 (290)
Q Consensus 165 ~~gs~~~y~~~~~dL---~~i~~lk~~~~pV~~D~s 197 (290)
.-|..|+-. ..-|+ +.+..++++++||.+-.|
T Consensus 185 DPGiGF~k~-~~~n~~ll~~l~~l~~lg~Pilvg~S 219 (282)
T PRK11613 185 DPGFGFGKN-LSHNYQLLARLAEFHHFNLPLLVGMS 219 (282)
T ss_pred eCCCCcCCC-HHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 777644321 12244 444555557999865333
No 32
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.21 E-value=0.036 Score=50.56 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d 108 (290)
-.++|+.+.+ .|++.+...-.+.+ .+. ...+..+++.+++.++|+.. =+-+.++++.+-+ .++
T Consensus 34 p~~~a~~~~~----~g~~~l~ivDLd~~--------~g~--~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~ 99 (241)
T PRK14024 34 PLDAALAWQR----DGAEWIHLVDLDAA--------FGR--GSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCA 99 (241)
T ss_pred HHHHHHHHHH----CCCCEEEEEecccc--------CCC--CccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCC
Confidence 4678888776 59987766545421 121 24568888999999998877 7888888888877 699
Q ss_pred eecccCCccCCHHHHHHHHhc-CCeEEE----eCCC------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCC
Q 022892 109 IIQIPAFLCRQTDLLVAAAKT-GKIINI----KKGQ------FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV 177 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~~-~~PVil----stG~------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~ 177 (290)
-.-+||..+.|.++++++++. +.-|++ +.+. .-+..+..+.++.+...|-..+++..+...-.|.- .
T Consensus 100 kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G--~ 177 (241)
T PRK14024 100 RVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTG--P 177 (241)
T ss_pred EEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccC--C
Confidence 999999999999999887643 322332 2221 00223344555566777877777766654212322 3
Q ss_pred CchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHH---HcCCCEEEEeeeCCCCCCCCCCC
Q 022892 178 DPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAI---AVGVDGVFMEVHDDPLNAPVDGP 253 (290)
Q Consensus 178 dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAv---a~GA~G~~IEkH~t~dka~~D~~ 253 (290)
|+..+..+++ .++||++...-+ . . ..+. ... ..|++|+|+=+-+ |.
T Consensus 178 d~~~i~~i~~~~~ipviasGGi~-----------------s---~-~D~~-~l~~~~~~GvdgV~igra~--------~~ 227 (241)
T PRK14024 178 NLELLREVCARTDAPVVASGGVS-----------------S---L-DDLR-ALAELVPLGVEGAIVGKAL--------YA 227 (241)
T ss_pred CHHHHHHHHhhCCCCEEEeCCCC-----------------C---H-HHHH-HHhhhccCCccEEEEeHHH--------Hc
Confidence 7788888888 789998832222 1 0 2222 222 3599999998766 44
Q ss_pred CCCChHHHHHH
Q 022892 254 TQWPLRNLEEL 264 (290)
Q Consensus 254 ~sl~p~~l~~l 264 (290)
..+++++..+.
T Consensus 228 g~~~~~~~~~~ 238 (241)
T PRK14024 228 GAFTLPEALAV 238 (241)
T ss_pred CCCCHHHHHHH
Confidence 45666665544
No 33
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=97.15 E-value=0.028 Score=53.68 Aligned_cols=174 Identities=15% Similarity=0.144 Sum_probs=95.7
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCC-Cc----------c------cCCCCCh
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRT-SS----------K------SFRGPGM 72 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rt-s~----------~------~~~g~~~ 72 (290)
.+...+|+.+=+|+.- ..+..+++. ++|+.+|.-.+...+||. .+ . .+...|+
T Consensus 45 Gl~l~nPi~~AsG~~~------~~~~~~~~~----~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~ 114 (327)
T cd04738 45 GLTFPNPVGLAAGFDK------NAEAIDALL----ALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGA 114 (327)
T ss_pred CEECCCCCEeCcCCCC------CHHHHHHHH----HCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccH
Confidence 4556777654444332 223344443 368776555454433432 11 1 1122333
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcc------cH-HHH------hhhcceecc--------cCCccCCHH----HHHHHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETV------QC-EEV------GKVADIIQI--------PAFLCRQTD----LLVAAA 127 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~------~~-~~l------~~~~d~~kI--------gs~~~~n~~----lL~~~a 127 (290)
+..++.+++... .++|++.++.-.. .. ++. .+.+|++-+ +.+..++.+ +++++-
T Consensus 115 ~~~~~~l~~~~~-~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~ 193 (327)
T cd04738 115 DAVAKRLKKRRP-RGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVK 193 (327)
T ss_pred HHHHHHHHHhcc-CCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHH
Confidence 444555655433 6899999986532 12 222 122555433 333344444 444443
Q ss_pred h-cC-----CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-------------CCCC---CCCCchhHHHH
Q 022892 128 K-TG-----KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-------------GYND---LIVDPRNLEWM 185 (290)
Q Consensus 128 ~-~~-----~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-------------~y~~---~~~dL~~i~~l 185 (290)
+ ++ +||.+|-....+.+++...++.+...|-+-|++..+.... +|.- ..+.++.+..+
T Consensus 194 ~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l 273 (327)
T cd04738 194 EERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLREL 273 (327)
T ss_pred HHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHH
Confidence 3 33 8999999987777899999998888887777766543211 1111 11346777888
Q ss_pred Hh-c--CCCEEE
Q 022892 186 RE-A--NCPVVA 194 (290)
Q Consensus 186 k~-~--~~pV~~ 194 (290)
++ . ++||+.
T Consensus 274 ~~~~~~~ipIi~ 285 (327)
T cd04738 274 YKLTGGKIPIIG 285 (327)
T ss_pred HHHhCCCCcEEE
Confidence 77 5 689876
No 34
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.14 E-value=0.031 Score=51.12 Aligned_cols=188 Identities=20% Similarity=0.214 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d 108 (290)
..+.|+.+.+ .|++.+.-...+. ....+ ...++.+++++++.++|+.. -+.+.++++.+.+ .++
T Consensus 32 ~~~~a~~~~~----~G~~~i~i~dl~~-----~~~~~----~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~ 98 (253)
T PRK02083 32 PVELAKRYNE----EGADELVFLDITA-----SSEGR----DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGAD 98 (253)
T ss_pred HHHHHHHHHH----cCCCEEEEEeCCc-----ccccC----cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCC
Confidence 4677777654 6988776654442 11111 24577888888888999988 7888888887766 699
Q ss_pred eecccCCccCCHHHHHHHHhc-C-CeEEEeCC-----------------CCCCHHHHHHHHHHHHHcCCCcEEE--Eee-
Q 022892 109 IIQIPAFLCRQTDLLVAAAKT-G-KIINIKKG-----------------QFCASSVMVNSAEKVRLAGNPNVMV--CER- 166 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~~-~-~PVilstG-----------------~~~tl~e~~~Ave~i~~~Gn~~i~L--~~~- 166 (290)
.+.||+..+.|.++++++.+. + --|+++-. ...+-.+....++.+...|-..+++ +++
T Consensus 99 ~Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~ 178 (253)
T PRK02083 99 KVSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRD 178 (253)
T ss_pred EEEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCC
Confidence 999999999999999887664 2 11222221 0001112223334455667777777 445
Q ss_pred cCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCC
Q 022892 167 GTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 245 (290)
Q Consensus 167 gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~ 245 (290)
|+..+| |+..+..+++ .++||++...-. . . ..+..+....|++|+|+=+-+
T Consensus 179 g~~~g~-----d~~~i~~~~~~~~ipvia~GGv~-----------------s---~-~d~~~~~~~~G~~gvivg~al-- 230 (253)
T PRK02083 179 GTKNGY-----DLELTRAVSDAVNVPVIASGGAG-----------------N---L-EHFVEAFTEGGADAALAASIF-- 230 (253)
T ss_pred CCCCCc-----CHHHHHHHHhhCCCCEEEECCCC-----------------C---H-HHHHHHHHhCCccEEeEhHHH--
Confidence 332233 6777888877 789998832221 1 0 233332223699999997655
Q ss_pred CCCCCCCCCCCChHHHHHHHH
Q 022892 246 LNAPVDGPTQWPLRNLEELLE 266 (290)
Q Consensus 246 dka~~D~~~sl~p~~l~~lv~ 266 (290)
|...++++++++.++
T Consensus 231 ------~~~~~~~~~~~~~~~ 245 (253)
T PRK02083 231 ------HFGEITIGELKAYLA 245 (253)
T ss_pred ------HcCCCCHHHHHHHHH
Confidence 444677777766654
No 35
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=97.13 E-value=0.028 Score=52.18 Aligned_cols=188 Identities=14% Similarity=0.103 Sum_probs=114.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHH-hcCCcEEEeec--CcccHHHHh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKI-AYDIPIVTDVH--ETVQCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~-~~Gi~~~s~~~--d~~~~~~l~ 104 (290)
+.+...++|+.|-+ +|++.|=..+-..........+.-.. .+.++.+.+..+ +.-+..++.+. +.+.++...
T Consensus 18 ~~~~~~~ia~~L~~----~GVd~IEvG~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 18 GDEFVKAIYRALAA----AGIDYVEIGYRSSPEKEFKGKSAFCD-DEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred CHHHHHHHHHHHHH----CCCCEEEeecCCCCccccCCCccCCC-HHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHh
Confidence 56677788888777 59998866532210111111111111 355666666543 45555555554 345566655
Q ss_pred h-hcceecccCCc--cCC-HHHHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC
Q 022892 105 K-VADIIQIPAFL--CRQ-TDLLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD 178 (290)
Q Consensus 105 ~-~~d~~kIgs~~--~~n-~~lL~~~a~~~~PVils--tG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d 178 (290)
+ .++++.|.-.. +.+ .+.++.+.+.|..|.+. .....+.+.+...++.+...|-..+.|+...... +|. ++-
T Consensus 93 ~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~-~P~-~v~ 170 (266)
T cd07944 93 GSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFGSM-YPE-DIK 170 (266)
T ss_pred cCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCC-CHH-HHH
Confidence 5 58887776432 222 23455555677766654 3333489999999999998898888888876631 222 122
Q ss_pred chhHHHHHh-cC--CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 179 PRNLEWMRE-AN--CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 179 L~~i~~lk~-~~--~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.-+..+++ ++ +||++ +.|-+ ..+...-+.+|+.+||+ .|+.-+.
T Consensus 171 -~lv~~l~~~~~~~~~i~~-H~Hn~------------------~Gla~AN~laA~~aGa~--~vd~s~~ 217 (266)
T cd07944 171 -RIISLLRSNLDKDIKLGF-HAHNN------------------LQLALANTLEAIELGVE--IIDATVY 217 (266)
T ss_pred -HHHHHHHHhcCCCceEEE-EeCCC------------------ccHHHHHHHHHHHcCCC--EEEEecc
Confidence 44566676 66 89999 88864 22335557789999997 7776553
No 36
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.08 E-value=0.069 Score=48.18 Aligned_cols=172 Identities=15% Similarity=0.192 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d 108 (290)
.++.|+++.+ .|++.+-. .++ .. ...+. ...+..+++.|++.++|+.. -+.+.++++.+.+ .++
T Consensus 34 ~~e~a~~~~~----~G~~~l~i--~dl-~~----~~~~~--~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~ 100 (241)
T PRK13585 34 PVEVAKRWVD----AGAETLHL--VDL-DG----AFEGE--RKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVD 100 (241)
T ss_pred HHHHHHHHHH----cCCCEEEE--Eec-hh----hhcCC--cccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCC
Confidence 4677777765 59887633 232 11 11121 24577899999999998888 5678888888777 699
Q ss_pred eecccCCccCCHHHHHHHHhc-CC-eEEE--e--------CCC----CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Q 022892 109 IIQIPAFLCRQTDLLVAAAKT-GK-IINI--K--------KGQ----FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGY 172 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~~-~~-PVil--s--------tG~----~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y 172 (290)
.+-||+..+.+.++++++.+. +. -|++ + +|. ..++.++ ++.+...|-..+++..+...-.+
T Consensus 101 ~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~---~~~~~~~G~~~i~~~~~~~~g~~ 177 (241)
T PRK13585 101 RVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEA---AKRFEELGAGSILFTNVDVEGLL 177 (241)
T ss_pred EEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHH---HHHHHHcCCCEEEEEeecCCCCc
Confidence 999999999999888887654 21 2322 2 121 1134443 33445678777877665322112
Q ss_pred CCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 173 NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 173 ~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.-.|+..+..+.+ .++||++-. |.+.. .. .......||+|+++=+-+
T Consensus 178 --~g~~~~~i~~i~~~~~iPvia~G--------------------GI~~~-~d-i~~~~~~Ga~gv~vgsa~ 225 (241)
T PRK13585 178 --EGVNTEPVKELVDSVDIPVIASG--------------------GVTTL-DD-LRALKEAGAAGVVVGSAL 225 (241)
T ss_pred --CCCCHHHHHHHHHhCCCCEEEeC--------------------CCCCH-HH-HHHHHHcCCCEEEEEHHH
Confidence 2257777888877 789998721 21111 22 223577899999997766
No 37
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.07 E-value=0.053 Score=48.62 Aligned_cols=173 Identities=17% Similarity=0.177 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~ 107 (290)
..+++|+.+.+ .|++.+..-..+. + +.+. ...+..++++++..++|+.. -+-+.++++.+.+ .+
T Consensus 29 dp~~~a~~~~~----~g~~~l~v~dl~~---~----~~g~--~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga 95 (230)
T TIGR00007 29 DPVEAAKKWEE----EGAERIHVVDLDG---A----KEGG--PVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGV 95 (230)
T ss_pred CHHHHHHHHHH----cCCCEEEEEeCCc---c----ccCC--CCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCC
Confidence 35788888755 5888766543331 1 1121 13467788888888888888 6677788887776 69
Q ss_pred ceecccCCccCCHHHHHHHHh-cC-CeEEEe----------CCC----CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Q 022892 108 DIIQIPAFLCRQTDLLVAAAK-TG-KIINIK----------KGQ----FCASSVMVNSAEKVRLAGNPNVMVCERGTMFG 171 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~-~~-~PVils----------tG~----~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~ 171 (290)
+.+-+|+..+.|.++++++++ .+ .+|+++ .|- ..++.+ .++.+...|-..+++..+... +
T Consensus 96 ~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~---~~~~~~~~g~~~ii~~~~~~~-g 171 (230)
T TIGR00007 96 DRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEE---LAKRLEELGLEGIIYTDISRD-G 171 (230)
T ss_pred CEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHH---HHHHHHhCCCCEEEEEeecCC-C
Confidence 999999999999988888665 44 455543 121 113333 344455677666666655432 1
Q ss_pred CCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 172 YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 172 y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.. ...|+..+..+++ .++||++.. |.+.. ..+. .+...||+|++|=+.+
T Consensus 172 ~~-~g~~~~~i~~i~~~~~ipvia~G--------------------Gi~~~-~di~-~~~~~Gadgv~ig~a~ 221 (230)
T TIGR00007 172 TL-SGPNFELTKELVKAVNVPVIASG--------------------GVSSI-DDLI-ALKKLGVYGVIVGKAL 221 (230)
T ss_pred Cc-CCCCHHHHHHHHHhCCCCEEEeC--------------------CCCCH-HHHH-HHHHCCCCEEEEeHHH
Confidence 11 1257888888887 789998732 21111 2233 3456899999997665
No 38
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.06 E-value=0.21 Score=44.75 Aligned_cols=192 Identities=15% Similarity=0.204 Sum_probs=123.2
Q ss_pred HHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc
Q 022892 7 LFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY 86 (290)
Q Consensus 7 ~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~ 86 (290)
|.+.+ ...+++.|.-. .+.+..+++++.+.+ .|+.++-.. ++ . ..+++.++++++++
T Consensus 3 ~~~~l-~~~~~~~v~r~---~~~~~~~~~~~a~~~----gGi~~iEvt-~~-----------~---~~~~~~i~~l~~~~ 59 (206)
T PRK09140 3 LMQPF-TKLPLIAILRG---ITPDEALAHVGALIE----AGFRAIEIP-LN-----------S---PDPFDSIAALVKAL 59 (206)
T ss_pred hhhHH-HhCCEEEEEeC---CCHHHHHHHHHHHHH----CCCCEEEEe-CC-----------C---ccHHHHHHHHHHHc
Confidence 44455 33444444322 256777888888777 588866432 21 1 24566888889888
Q ss_pred CCc--EEE-eecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEE
Q 022892 87 DIP--IVT-DVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVM 162 (290)
Q Consensus 87 Gi~--~~s-~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~ 162 (290)
+-+ +-+ |+++.++++...+ ..+++-.|. .+.++++++...+.|++.. .. |++|+..|.+ .|-+.+.
T Consensus 60 ~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~---~~~~v~~~~~~~~~~~~~G--~~-t~~E~~~A~~----~Gad~vk 129 (206)
T PRK09140 60 GDRALIGAGTVLSPEQVDRLADAGGRLIVTPN---TDPEVIRRAVALGMVVMPG--VA-TPTEAFAALR----AGAQALK 129 (206)
T ss_pred CCCcEEeEEecCCHHHHHHHHHcCCCEEECCC---CCHHHHHHHHHCCCcEEcc--cC-CHHHHHHHHH----cCCCEEE
Confidence 743 323 8999999999877 699988877 4568888888889998887 44 9999988865 5666665
Q ss_pred EEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 163 VCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 163 L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
+ | |...+.+..+..++. + ++|++. . +|.. ..-...-.+.|++|+.+
T Consensus 130 ~------F--pa~~~G~~~l~~l~~~~~~~ipvva--i------------------GGI~---~~n~~~~~~aGa~~vav 178 (206)
T PRK09140 130 L------F--PASQLGPAGIKALRAVLPPDVPVFA--V------------------GGVT---PENLAPYLAAGAAGFGL 178 (206)
T ss_pred E------C--CCCCCCHHHHHHHHhhcCCCCeEEE--E------------------CCCC---HHHHHHHHHCCCeEEEE
Confidence 4 3 333356778888887 6 488864 1 2310 22233456789999887
Q ss_pred eeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 240 EVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 240 EkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
=+-++... .+.++.++..+.+++
T Consensus 179 ~s~l~~~~--------~~~~~i~~~a~~~~~ 201 (206)
T PRK09140 179 GSALYRPG--------QSAEEVAERARAFVA 201 (206)
T ss_pred ehHhcccc--------cChHHHHHHHHHHHH
Confidence 66653311 123456665555543
No 39
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.00 E-value=0.11 Score=47.15 Aligned_cols=191 Identities=18% Similarity=0.156 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~ 107 (290)
...+.|+++.+ .|++.+.....+ ... . +. ...+..+++++++.++|++. -+.+.+++..+.+ .+
T Consensus 28 d~~~~a~~~~~----~G~~~i~i~d~~-----~~~-~-~~--~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~ 94 (243)
T cd04731 28 DPVELAKRYNE----QGADELVFLDIT-----ASS-E-GR--ETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGA 94 (243)
T ss_pred CHHHHHHHHHH----CCCCEEEEEcCC-----ccc-c-cC--cccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCC
Confidence 45778888776 599866554333 111 1 11 23467788888888999888 6888888877766 69
Q ss_pred ceecccCCccCCHHHHHHHHh-cC--C---eEEEeCC------------CCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 108 DIIQIPAFLCRQTDLLVAAAK-TG--K---IINIKKG------------QFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~-~~--~---PVilstG------------~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
+.+.+|+....|..+++++.+ .+ + +|=++.+ ...+..+...-++.+...|-..+++..+...
T Consensus 95 ~~v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~ 174 (243)
T cd04731 95 DKVSINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRD 174 (243)
T ss_pred ceEEECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCC
Confidence 999999999999998887755 22 1 2212211 1112333444445566677766666443321
Q ss_pred CCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc-CCCEEEEeeeCCCCC
Q 022892 170 FGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV-GVDGVFMEVHDDPLN 247 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~-GA~G~~IEkH~t~dk 247 (290)
-.. .-.|+..+..+++ .++||+...... . +.-+..+... |++|+++=+-+
T Consensus 175 g~~--~g~~~~~i~~i~~~~~~pvia~GGi~-----------------~-----~~di~~~l~~~g~dgv~vg~al---- 226 (243)
T cd04731 175 GTK--KGYDLELIRAVSSAVNIPVIASGGAG-----------------K-----PEHFVEAFEEGGADAALAASIF---- 226 (243)
T ss_pred CCC--CCCCHHHHHHHHhhCCCCEEEeCCCC-----------------C-----HHHHHHHHHhCCCCEEEEeHHH----
Confidence 111 1236777788877 789998732222 1 2223344554 99999986544
Q ss_pred CCCCCCCCCChHHHHHHHH
Q 022892 248 APVDGPTQWPLRNLEELLE 266 (290)
Q Consensus 248 a~~D~~~sl~p~~l~~lv~ 266 (290)
|...+++.+++++++
T Consensus 227 ----~~~~~~~~~~~~~~~ 241 (243)
T cd04731 227 ----HFGEYTIAELKEYLA 241 (243)
T ss_pred ----HcCCCCHHHHHHHHh
Confidence 223345556555543
No 40
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=96.93 E-value=0.086 Score=47.20 Aligned_cols=173 Identities=16% Similarity=0.158 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~ 107 (290)
...++|+.+.+ .|++.+.....+. + +++. ...+..+++++++.++|+.. =+-+.++++.+.+ .+
T Consensus 31 ~~~~~a~~~~~----~g~~~i~v~dld~---~----~~g~--~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga 97 (233)
T PRK00748 31 DPVAQAKAWED----QGAKWLHLVDLDG---A----KAGK--PVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGV 97 (233)
T ss_pred CHHHHHHHHHH----cCCCEEEEEeCCc---c----ccCC--cccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCC
Confidence 35778888877 5988776544331 0 1121 13477788888888999887 5667777777766 69
Q ss_pred ceecccCCccCCHHHHHHHHhc---CCeEEEe--------CC----CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Q 022892 108 DIIQIPAFLCRQTDLLVAAAKT---GKIINIK--------KG----QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGY 172 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~~---~~PVils--------tG----~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y 172 (290)
+.+.+|+..+.+.++++++.+. ..+|-+. .| ...++.|+.. .+...|...+++..+...-.+
T Consensus 98 ~~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~---~~~~~g~~~ii~~~~~~~g~~ 174 (233)
T PRK00748 98 SRVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAK---RFEDAGVKAIIYTDISRDGTL 174 (233)
T ss_pred CEEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHH---HHHhcCCCEEEEeeecCcCCc
Confidence 9999999999999888887654 2333322 11 1224445444 445556655555545432112
Q ss_pred CCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC-CCEEEEeeeC
Q 022892 173 NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG-VDGVFMEVHD 243 (290)
Q Consensus 173 ~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G-A~G~~IEkH~ 243 (290)
. -.|+..+..+++ .++||+....-. . ..=.......| |+|+|+=+-+
T Consensus 175 ~--G~d~~~i~~l~~~~~ipvia~GGi~-----------------~-----~~di~~~~~~g~~~gv~vg~a~ 223 (233)
T PRK00748 175 S--GPNVEATRELAAAVPIPVIASGGVS-----------------S-----LDDIKALKGLGAVEGVIVGRAL 223 (233)
T ss_pred C--CCCHHHHHHHHHhCCCCEEEeCCCC-----------------C-----HHHHHHHHHcCCccEEEEEHHH
Confidence 2 257888888888 789998732221 1 22233455667 9999987654
No 41
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=96.90 E-value=0.081 Score=47.94 Aligned_cols=181 Identities=15% Similarity=0.138 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEEeecC-cccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVTDVHE-TVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s~~~d-~~~~~~l~~ 105 (290)
+.+..+++++.|.+ +|++.|-..++.. +... +. .+..++.++++.+.. ++.+.+-... .+.++.+.+
T Consensus 17 s~e~~~~i~~~L~~----~GV~~IEvg~~~~-~~~~---p~---~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~ 85 (265)
T cd03174 17 STEDKLEIAEALDE----AGVDSIEVGSGAS-PKAV---PQ---MEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALE 85 (265)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEeccCcC-cccc---cc---CCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHh
Confidence 55666777777666 6999988876653 1111 11 134455555554443 4666443333 677777777
Q ss_pred -hcceecccCCccC-------------CH----HHHHHHHhcCCeEEEeC--CCC--CCHHHHHHHHHHHHHcCCCcEEE
Q 022892 106 -VADIIQIPAFLCR-------------QT----DLLVAAAKTGKIINIKK--GQF--CASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 106 -~~d~~kIgs~~~~-------------n~----~lL~~~a~~~~PVilst--G~~--~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
.++.+.|.-.... +. +.++.+.+.|++|.+.. -.. .+++++.+.++.+...|-..+.|
T Consensus 86 ~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 86 AGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred CCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 5777777654331 12 34455667788887776 222 48899999999999899877777
Q ss_pred EeecCCCCCCCCCCCchhHHHHHh-cC-CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 164 CERGTMFGYNDLIVDPRNLEWMRE-AN-CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 164 ~~~gs~~~y~~~~~dL~~i~~lk~-~~-~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
+.-... -+|. ++. .-+..+++ +. +|+++ +.|-. +.+...-+.+|+.+||+ .|+.
T Consensus 166 ~Dt~G~-~~P~-~v~-~li~~l~~~~~~~~~~~-H~Hn~------------------~gla~an~laA~~aG~~--~id~ 221 (265)
T cd03174 166 KDTVGL-ATPE-EVA-ELVKALREALPDVPLGL-HTHNT------------------LGLAVANSLAALEAGAD--RVDG 221 (265)
T ss_pred chhcCC-cCHH-HHH-HHHHHHHHhCCCCeEEE-EeCCC------------------CChHHHHHHHHHHcCCC--EEEe
Confidence 665442 1222 121 44666777 55 89999 77764 22335667889999997 7776
Q ss_pred eC
Q 022892 242 HD 243 (290)
Q Consensus 242 H~ 243 (290)
-+
T Consensus 222 s~ 223 (265)
T cd03174 222 SV 223 (265)
T ss_pred cc
Confidence 55
No 42
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=96.89 E-value=0.075 Score=47.80 Aligned_cols=177 Identities=15% Similarity=0.144 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~ 107 (290)
..+++|+++.+ .|++.+.....+. .. .+. ...+..+++++++.++|+.. .+.+.++++.+.+ .+
T Consensus 31 dp~~~a~~~~~----~g~~~i~i~dl~~-----~~--~~~--~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~ 97 (232)
T TIGR03572 31 DPVNAARIYNA----KGADELIVLDIDA-----SK--RGR--EPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGA 97 (232)
T ss_pred CHHHHHHHHHH----cCCCEEEEEeCCC-----cc--cCC--CCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCC
Confidence 46788888865 5888665543331 11 011 13466788888888888777 7888888887766 59
Q ss_pred ceecccCCccCCHHHHHHHHhc-CCe-EEEe----CCC-------------CCCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 022892 108 DIIQIPAFLCRQTDLLVAAAKT-GKI-INIK----KGQ-------------FCASSVMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~~-~~P-Vils----tG~-------------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
+.+-+|+..+.|.++++++.+. +.. ++++ .+. ..+..+....++.+...|-..+++..+..
T Consensus 98 ~~vilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~ 177 (232)
T TIGR03572 98 DKVSINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDR 177 (232)
T ss_pred CEEEEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCc
Confidence 9999999999999999887653 332 3322 210 00223344556667777877777666332
Q ss_pred CCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 169 MFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 169 ~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.-.+ .-.|+..+..+++ .++||+.-.... . ...+.......||+|+++=+-|
T Consensus 178 ~g~~--~g~~~~~~~~i~~~~~ipvia~GGi~-----------------s----~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 178 DGTM--KGYDLELIKTVSDAVSIPVIALGGAG-----------------S----LDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred cCCc--CCCCHHHHHHHHhhCCCCEEEECCCC-----------------C----HHHHHHHHHHcCCCEEEEehhh
Confidence 1112 2247778888887 789998722211 1 1334443566799999986543
No 43
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.87 E-value=0.038 Score=53.14 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcc------cH-HH------Hhhhcceecc--------cCCccCCH----HHHHHHHh
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETV------QC-EE------VGKVADIIQI--------PAFLCRQT----DLLVAAAK 128 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~------~~-~~------l~~~~d~~kI--------gs~~~~n~----~lL~~~a~ 128 (290)
..++.+++.. .++|++.++.-.. .. ++ +.+.+|++-+ +.+..++. ++++++-+
T Consensus 126 ~~~~~l~~~~--~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~ 203 (344)
T PRK05286 126 ALAERLKKAY--RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKE 203 (344)
T ss_pred HHHHHHHHhc--CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHH
Confidence 3444454433 6899999986421 11 21 2223555533 33333343 34455433
Q ss_pred -cC-----CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-------------CCCC---CCCCchhHHHHH
Q 022892 129 -TG-----KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-------------GYND---LIVDPRNLEWMR 186 (290)
Q Consensus 129 -~~-----~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-------------~y~~---~~~dL~~i~~lk 186 (290)
.+ +||++|-+...+.+++.+.++.+...|-+-|++..+.... +|.- ..+.++.+..++
T Consensus 204 ~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~ 283 (344)
T PRK05286 204 AQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLY 283 (344)
T ss_pred HHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHH
Confidence 34 8999999988788899999998888888766666553211 1110 123566777777
Q ss_pred h-c--CCCEEE
Q 022892 187 E-A--NCPVVA 194 (290)
Q Consensus 187 ~-~--~~pV~~ 194 (290)
+ . ++||+.
T Consensus 284 ~~~~~~ipIig 294 (344)
T PRK05286 284 KELGGRLPIIG 294 (344)
T ss_pred HHhCCCCCEEE
Confidence 7 5 689876
No 44
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=96.86 E-value=0.27 Score=46.98 Aligned_cols=173 Identities=17% Similarity=0.189 Sum_probs=95.3
Q ss_pred CChhHHHHHHHHHHHhcCCcEEEeecCccc---HHH---Hhh-hcceecccCCcc------CC-------HHHHHHHH-h
Q 022892 70 PGMVEGLKILEKVKIAYDIPIVTDVHETVQ---CEE---VGK-VADIIQIPAFLC------RQ-------TDLLVAAA-K 128 (290)
Q Consensus 70 ~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~---~~~---l~~-~~d~~kIgs~~~------~n-------~~lL~~~a-~ 128 (290)
.|++..++.+++..++.+.|++.+++-... .++ +.+ .+|++.|--..+ .. .++++.+. .
T Consensus 82 ~g~~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~ 161 (325)
T cd04739 82 LGPEEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA 161 (325)
T ss_pred cCHHHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc
Confidence 344556667777666678999999864322 112 222 256665522211 10 24566664 3
Q ss_pred cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC--C--------------CCCCchhHHHHHh-cCCC
Q 022892 129 TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYN--D--------------LIVDPRNLEWMRE-ANCP 191 (290)
Q Consensus 129 ~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~--~--------------~~~dL~~i~~lk~-~~~p 191 (290)
+++||++|-... ++++...++.+...|-.-|++..+......+ . ...-|+.+..+++ .++|
T Consensus 162 ~~iPv~vKl~p~--~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ip 239 (325)
T cd04739 162 VTIPVAVKLSPF--FSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKAS 239 (325)
T ss_pred cCCCEEEEcCCC--ccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCC
Confidence 589999997654 4577777777788888778777765221000 0 0112345555655 6789
Q ss_pred EEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 192 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 192 V~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
|+... |.+. ..-+...+.+||+++.|=+-+- .+ .|+-+.++.+++.+.
T Consensus 240 Iig~G--------------------GI~s--~~Da~e~l~aGA~~Vqv~ta~~-----~~-----gp~~~~~i~~~L~~~ 287 (325)
T cd04739 240 LAASG--------------------GVHD--AEDVVKYLLAGADVVMTTSALL-----RH-----GPDYIGTLLAGLEAW 287 (325)
T ss_pred EEEEC--------------------CCCC--HHHHHHHHHcCCCeeEEehhhh-----hc-----CchHHHHHHHHHHHH
Confidence 87621 2111 1224445678999776653321 11 245566666666554
Q ss_pred HHHhC
Q 022892 272 AKVSK 276 (290)
Q Consensus 272 ~~~lg 276 (290)
-...|
T Consensus 288 l~~~g 292 (325)
T cd04739 288 MEEHG 292 (325)
T ss_pred HHHcC
Confidence 33333
No 45
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=96.85 E-value=0.12 Score=48.68 Aligned_cols=147 Identities=14% Similarity=0.078 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHhc-CCcEEEeecCc---ccH----HHHhh-hcceecc-------------cCCccCCHHHH----HHH
Q 022892 73 VEGLKILEKVKIAY-DIPIVTDVHET---VQC----EEVGK-VADIIQI-------------PAFLCRQTDLL----VAA 126 (290)
Q Consensus 73 ~~~l~~L~~~~~~~-Gi~~~s~~~d~---~~~----~~l~~-~~d~~kI-------------gs~~~~n~~lL----~~~ 126 (290)
...++.+++..+.. +.|++..++-. ++. +.+.+ .+|++-| |+..+.+.+++ +++
T Consensus 84 ~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v 163 (299)
T cd02940 84 EYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWV 163 (299)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHH
Confidence 34455555555554 58889988554 222 22222 2555544 33334555544 344
Q ss_pred H-hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC--------------------CC-CCCC---CCCCchh
Q 022892 127 A-KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT--------------------MF-GYND---LIVDPRN 181 (290)
Q Consensus 127 a-~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs--------------------~~-~y~~---~~~dL~~ 181 (290)
. .+++||.+|-... .+++.+.++.+.+.|-.-|++..+.. .+ +|.- ..+.++.
T Consensus 164 ~~~~~~Pv~vKl~~~--~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~ 241 (299)
T cd02940 164 REAVKIPVIAKLTPN--ITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRA 241 (299)
T ss_pred HHhcCCCeEEECCCC--chhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHH
Confidence 2 3579999997754 56777788888888877777543221 11 1211 1234778
Q ss_pred HHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 182 LEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 182 i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
+..+++ . ++||+.+..=. . ..-+...+.+||++++|=+-+
T Consensus 242 v~~~~~~~~~~ipIig~GGI~----------------~------~~da~~~l~aGA~~V~i~ta~ 284 (299)
T cd02940 242 VSQIARAPEPGLPISGIGGIE----------------S------WEDAAEFLLLGASVVQVCTAV 284 (299)
T ss_pred HHHHHHhcCCCCcEEEECCCC----------------C------HHHHHHHHHcCCChheEceee
Confidence 888888 7 79998743211 1 223444567999988876543
No 46
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=96.84 E-value=0.15 Score=46.71 Aligned_cols=191 Identities=15% Similarity=0.157 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~ 107 (290)
...+.|+++.+ .|++.+.....+.+. .+. ...+..+++++++.++|+.. =+.+.++++.+.. .+
T Consensus 31 dp~~~a~~~~~----~G~~~l~v~Dl~~~~-------~~~--~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga 97 (254)
T TIGR00735 31 DPVELAQRYDE----EGADELVFLDITASS-------EGR--TTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGA 97 (254)
T ss_pred CHHHHHHHHHH----cCCCEEEEEcCCccc-------ccC--hhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCC
Confidence 35677887766 599887765444210 111 34578888898889999888 7888888888777 69
Q ss_pred ceecccCCccCCHHHHHHHHhc-C-CeEEEeC----C---------------CCCCHHHHHHHHHHHHHcCCCcEEEEee
Q 022892 108 DIIQIPAFLCRQTDLLVAAAKT-G-KIINIKK----G---------------QFCASSVMVNSAEKVRLAGNPNVMVCER 166 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~~-~-~PVilst----G---------------~~~tl~e~~~Ave~i~~~Gn~~i~L~~~ 166 (290)
+.+.||+..+.|.++++++.+. + .-|+++- | ...+..+....++.+...|-..+++ +.
T Consensus 98 ~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iiv-t~ 176 (254)
T TIGR00735 98 DKVSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILL-TS 176 (254)
T ss_pred CEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEE-eC
Confidence 9999999999999999987643 2 1233332 2 1112344555566677777765555 33
Q ss_pred cCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC-CCEEEEeeeCC
Q 022892 167 GTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG-VDGVFMEVHDD 244 (290)
Q Consensus 167 gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G-A~G~~IEkH~t 244 (290)
..+-++. .-.|+..+..+++ .++||+.-..-. . +.-...+...| ++|+++=+-+
T Consensus 177 i~~~g~~-~g~~~~~~~~i~~~~~ipvia~GGi~-----------------s-----~~di~~~~~~g~~dgv~~g~a~- 232 (254)
T TIGR00735 177 MDKDGTK-SGYDLELTKAVSEAVKIPVIASGGAG-----------------K-----PEHFYEAFTKGKADAALAASVF- 232 (254)
T ss_pred cCcccCC-CCCCHHHHHHHHHhCCCCEEEeCCCC-----------------C-----HHHHHHHHHcCCcceeeEhHHH-
Confidence 3322231 2357777788887 789998721111 1 22333556667 9998886554
Q ss_pred CCCCCCCCCCCCChHHHHHHHH
Q 022892 245 PLNAPVDGPTQWPLRNLEELLE 266 (290)
Q Consensus 245 ~dka~~D~~~sl~p~~l~~lv~ 266 (290)
|...++++++.+.++
T Consensus 233 -------~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 233 -------HYREITIGEVKEYLA 247 (254)
T ss_pred -------hCCCCCHHHHHHHHH
Confidence 334566667666554
No 47
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.79 E-value=0.14 Score=45.53 Aligned_cols=181 Identities=15% Similarity=0.132 Sum_probs=109.3
Q ss_pred CCeEEEEccCCc-------cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC
Q 022892 15 EPFFLLAGPNVI-------ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD 87 (290)
Q Consensus 15 ~~~~iIAgpcsi-------en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G 87 (290)
+++.||||.--- .+.....++|++..+ .|++++.-...+. .|. ..++.++.+++..+
T Consensus 9 ~~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~----~GA~~l~v~~~~~-------~~~-----g~~~~~~~i~~~v~ 72 (217)
T cd00331 9 GGLGVIAEVKRASPSKGLIREDFDPVEIAKAYEK----AGAAAISVLTEPK-------YFQ-----GSLEDLRAVREAVS 72 (217)
T ss_pred CCceEEEEecCCCCCCCcCCCCCCHHHHHHHHHH----cCCCEEEEEeCcc-------ccC-----CCHHHHHHHHHhcC
Confidence 468999986542 122346788888777 5999885543321 121 22345555555568
Q ss_pred CcEEEe--ecCcccHHHHhh-hcceecccCCccCC---HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 88 IPIVTD--VHETVQCEEVGK-VADIIQIPAFLCRQ---TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 88 i~~~s~--~~d~~~~~~l~~-~~d~~kIgs~~~~n---~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
+|+..- +.++.+++.+.+ .+|.+-++..++.. .++++++...+.-+++... +.+|+..+.+ .|...+
T Consensus 73 iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~---~~~e~~~~~~----~g~~~i 145 (217)
T cd00331 73 LPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVH---DEEELERALA----LGAKII 145 (217)
T ss_pred CCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHH----cCCCEE
Confidence 898853 244456777766 69999999888764 2445555567777666553 7888776644 455444
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEE
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVF 238 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~ 238 (290)
. +. +.. ......|+..+..+++ . ++||+. ..-- + . +.-...+..+||+|++
T Consensus 146 ~-~t-~~~--~~~~~~~~~~~~~l~~~~~~~~pvia-~gGI--------------~--s-----~edi~~~~~~Ga~gvi 199 (217)
T cd00331 146 G-IN-NRD--LKTFEVDLNTTERLAPLIPKDVILVS-ESGI--------------S--T-----PEDVKRLAEAGADAVL 199 (217)
T ss_pred E-Ee-CCC--ccccCcCHHHHHHHHHhCCCCCEEEE-EcCC--------------C--C-----HHHHHHHHHcCCCEEE
Confidence 3 33 211 1122356667777765 3 578765 1111 0 1 2344566788999999
Q ss_pred EeeeCC
Q 022892 239 MEVHDD 244 (290)
Q Consensus 239 IEkH~t 244 (290)
+=+.++
T Consensus 200 vGsai~ 205 (217)
T cd00331 200 IGESLM 205 (217)
T ss_pred ECHHHc
Confidence 988874
No 48
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.77 E-value=0.021 Score=54.04 Aligned_cols=138 Identities=12% Similarity=0.068 Sum_probs=93.9
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
.|+++.++-+..++-.+||.-++..+++ ..+.+.++|..+.. +.+|.| -.|.- +++|+...++.|..
T Consensus 8 ~lr~ll~~~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~-------~~lG~P---D~g~l-~~~e~~~~~~~I~~- 75 (292)
T PRK11320 8 RFRAALAAEKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAA-------ASLGLP---DLGIT-TLDDVLIDVRRITD- 75 (292)
T ss_pred HHHHHHcCCCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHh-------HhcCCC---CCCCC-CHHHHHHHHHHHHh-
Confidence 4777777777888889999999988877 68888888876543 344777 33544 88888887776621
Q ss_pred CCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCE
Q 022892 157 GNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDG 236 (290)
Q Consensus 157 Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G 236 (290)
..++||++|.+.+- |...-+....+.-..+||.|
T Consensus 76 ------------------------------~~~iPviaD~d~Gy----------------G~~~~v~r~V~~~~~aGaag 109 (292)
T PRK11320 76 ------------------------------ACDLPLLVDIDTGF----------------GGAFNIARTVKSMIKAGAAA 109 (292)
T ss_pred ------------------------------ccCCCEEEECCCCC----------------CCHHHHHHHHHHHHHcCCeE
Confidence 13589999999884 33333444566667899999
Q ss_pred EEEeeeCCCCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhC
Q 022892 237 VFMEVHDDPLNAP-VDGPTQWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 237 ~~IEkH~t~dka~-~D~~~sl~p~~l~~lv~~ir~~~~~lg 276 (290)
+.||-...|.|.- ..++.-.++ +++++.|+.+..+..
T Consensus 110 i~IEDq~~pK~cg~~~~~~lv~~---ee~~~kI~Aa~~a~~ 147 (292)
T PRK11320 110 VHIEDQVGAKRCGHRPNKEIVSQ---EEMVDRIKAAVDART 147 (292)
T ss_pred EEEecCCCccccCCCCCCcccCH---HHHHHHHHHHHHhcc
Confidence 9999887775532 123333344 455666666655543
No 49
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=96.62 E-value=0.08 Score=50.88 Aligned_cols=188 Identities=11% Similarity=0.080 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEecccccc-CCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee--cCcccHHHHh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDK-ANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV--HETVQCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k-~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~--~d~~~~~~l~ 104 (290)
+.++..+++++|.+ +|++.|=...-.- ...+..+.|....-.+.++.+.+.+...-+..+..| .+.+.++...
T Consensus 22 ~~~~~~~ia~~Ld~----aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~ 97 (333)
T TIGR03217 22 TIEQVRAIAAALDE----AGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAY 97 (333)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHH
Confidence 56777888888877 5999875531100 000000112111112333444433333222223322 3556677766
Q ss_pred h-hcceecccCCccCC---HHHHHHHHhcCCeEE--EeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC
Q 022892 105 K-VADIIQIPAFLCRQ---TDLLVAAAKTGKIIN--IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD 178 (290)
Q Consensus 105 ~-~~d~~kIgs~~~~n---~~lL~~~a~~~~PVi--lstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d 178 (290)
+ .++++-|+...... .+.++.+-+.|.-|. +......+++++.+.++.+.+.|-+.|.|+...... +|. ++-
T Consensus 98 ~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~-~P~-~v~ 175 (333)
T TIGR03217 98 DAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAM-LPD-DVR 175 (333)
T ss_pred HCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCC-CHH-HHH
Confidence 6 69998887653321 134444555677553 333334489999999999999998888887766532 222 222
Q ss_pred chhHHHHHh-cC--CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 179 PRNLEWMRE-AN--CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 179 L~~i~~lk~-~~--~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
+-+..+++ .+ +||+| +.|-+ .| +...-+.+|+..||+ .|+.-+
T Consensus 176 -~~v~~l~~~l~~~i~ig~-H~Hnn---------------lG---la~ANslaAi~aGa~--~iD~Sl 221 (333)
T TIGR03217 176 -DRVRALKAVLKPETQVGF-HAHHN---------------LS---LAVANSIAAIEAGAT--RIDASL 221 (333)
T ss_pred -HHHHHHHHhCCCCceEEE-EeCCC---------------Cc---hHHHHHHHHHHhCCC--EEEeec
Confidence 34556666 55 89999 77764 12 224557788999998 666554
No 50
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.62 E-value=0.5 Score=42.52 Aligned_cols=162 Identities=15% Similarity=0.084 Sum_probs=109.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEEE-eecCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIVT-DVHETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~s-~~~d~~~~~~l~~ 105 (290)
+.+..++.++.|++ .|+.++-.. |+. ...++.+++++++++ +.+-. |+.++++++.+.+
T Consensus 18 ~~e~a~~~~~al~~----~Gi~~iEit------------~~t---~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~ 78 (204)
T TIGR01182 18 DVDDALPLAKALIE----GGLRVLEVT------------LRT---PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVD 78 (204)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEEe------------CCC---ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH
Confidence 66788888888888 588876543 111 234555666666654 55544 9999999999887
Q ss_pred -hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC-chhHH
Q 022892 106 -VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD-PRNLE 183 (290)
Q Consensus 106 -~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d-L~~i~ 183 (290)
..+|+-=+. .|.++++.+-+.+.|++= |.. |+.|+..|.+ .|.+-+=+ ||...+. ..-+.
T Consensus 79 aGA~FivsP~---~~~~v~~~~~~~~i~~iP--G~~-TptEi~~A~~----~Ga~~vKl--------FPA~~~GG~~yik 140 (204)
T TIGR01182 79 AGAQFIVSPG---LTPELAKHAQDHGIPIIP--GVA-TPSEIMLALE----LGITALKL--------FPAEVSGGVKMLK 140 (204)
T ss_pred cCCCEEECCC---CCHHHHHHHHHcCCcEEC--CCC-CHHHHHHHHH----CCCCEEEE--------CCchhcCCHHHHH
Confidence 689885554 388999998889998886 888 9999999865 56654444 3443343 45677
Q ss_pred HHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCC
Q 022892 184 WMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAP 249 (290)
Q Consensus 184 ~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~ 249 (290)
.|+. + ++|++ ++=++ . ..-...-.++|+.++.+=+.+.+....
T Consensus 141 al~~plp~i~~~--ptGGV----------------~-----~~N~~~~l~aGa~~vg~Gs~L~~~~~~ 185 (204)
T TIGR01182 141 ALAGPFPQVRFC--PTGGI----------------N-----LANVRDYLAAPNVACGGGSWLVPKDLI 185 (204)
T ss_pred HHhccCCCCcEE--ecCCC----------------C-----HHHHHHHHhCCCEEEEEChhhcCchhh
Confidence 7776 4 56664 33322 1 222334578899988888888764443
No 51
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.62 E-value=0.37 Score=42.18 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEE-EeecCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIV-TDVHETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~-s~~~d~~~~~~l~~ 105 (290)
+.+..+++++.+.+ .|+++|-.. ++. ..+++.+++++++++ +.+- -++++.++++.+.+
T Consensus 14 ~~~~~~~~~~~l~~----~G~~~vev~------------~~~---~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~ 74 (190)
T cd00452 14 DAEDALALAEALIE----GGIRAIEIT------------LRT---PGALEAIRALRKEFPEALIGAGTVLTPEQADAAIA 74 (190)
T ss_pred CHHHHHHHHHHHHH----CCCCEEEEe------------CCC---hhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH
Confidence 56677777777776 599876543 111 235557777777776 4433 38899999999887
Q ss_pred -hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHH
Q 022892 106 -VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEW 184 (290)
Q Consensus 106 -~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~ 184 (290)
..+++-.|.. +.++++.+-..+.|++. |.+ |++|+..|.+ .|-+.+-+ |+.+. .-...+..
T Consensus 75 ~Ga~~i~~p~~---~~~~~~~~~~~~~~~i~--gv~-t~~e~~~A~~----~Gad~i~~------~p~~~--~g~~~~~~ 136 (190)
T cd00452 75 AGAQFIVSPGL---DPEVVKAANRAGIPLLP--GVA-TPTEIMQALE----LGADIVKL------FPAEA--VGPAYIKA 136 (190)
T ss_pred cCCCEEEcCCC---CHHHHHHHHHcCCcEEC--CcC-CHHHHHHHHH----CCCCEEEE------cCCcc--cCHHHHHH
Confidence 6888876653 56787777778888886 777 9999998864 57655554 22222 24556677
Q ss_pred HHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 185 MRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 185 lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+++ + ++|++. . +|.. ..-.....+.|++|+.+=.-++
T Consensus 137 l~~~~~~~p~~a--~------------------GGI~---~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 137 LKGPFPQVRFMP--T------------------GGVS---LDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHhhCCCCeEEE--e------------------CCCC---HHHHHHHHHCCCEEEEEchhcc
Confidence 776 5 588765 1 1210 2334455778999877665554
No 52
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=96.61 E-value=0.09 Score=52.60 Aligned_cols=208 Identities=18% Similarity=0.141 Sum_probs=126.7
Q ss_pred hhHHhhhc-CCCCeEEEEccCCccCHHHHHHHHHHH-----HHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH
Q 022892 5 TALFNQLK-AAEPFFLLAGPNVIESEEHIMRMAKHI-----KSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI 78 (290)
Q Consensus 5 ~~~~~~i~-~~~~~~iIAgpcsien~~~~le~Ak~L-----~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~ 78 (290)
|.||+-=+ .-+|+-|.++++-.-+.+...+.++++ .+..+++++|+|-...-. + . .+.+.+
T Consensus 79 tvL~rhe~tf~np~~Ia~eI~D~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s-----------~-d-p~~v~~ 145 (450)
T PRK04165 79 TVLYRHEKTFFNPTGIAVDVSDTMDDEEIDARLKKINNFQFERVGEILKLDMVALRNAS-----------G-D-PEKFAK 145 (450)
T ss_pred ceeeecCcCCCCCCEEEEEEeCCCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCC-----------C-C-HHHHHH
Confidence 45555433 357778888986644567777777777 443344458887654211 0 1 233444
Q ss_pred -HHHHHHhcCCcEEEeecCcccHHHHhh-hcc-eecccCCccCCHHHH-HHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 022892 79 -LEKVKIAYDIPIVTDVHETVQCEEVGK-VAD-IIQIPAFLCRQTDLL-VAAAKTGKIINIKKGQFCASSVMVNSAEKVR 154 (290)
Q Consensus 79 -L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d-~~kIgs~~~~n~~lL-~~~a~~~~PVilstG~~~tl~e~~~Ave~i~ 154 (290)
++++.+..++|+.-+-+|++.++...+ ..+ .--|.|-+..|++-+ ..+.+.+.||+++.. .++...+.++.+.
T Consensus 146 ~Vk~V~~~~dvPLSIDT~dpevleaAleagad~~plI~Sat~dN~~~m~~la~~yg~pvVv~~~---dl~~L~~lv~~~~ 222 (450)
T PRK04165 146 AVKKVAETTDLPLILCSEDPAVLKAALEVVADRKPLLYAATKENYEEMAELAKEYNCPLVVKAP---NLEELKELVEKLQ 222 (450)
T ss_pred HHHHHHHhcCCCEEEeCCCHHHHHHHHHhcCCCCceEEecCcchHHHHHHHHHHcCCcEEEEch---hHHHHHHHHHHHH
Confidence 445555589999999999998888766 334 223444445677644 445667999999553 3888888999999
Q ss_pred HcCCCcEEEEeecCC-CCCCCCCCCchhHHHH---H---hcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHH
Q 022892 155 LAGNPNVMVCERGTM-FGYNDLIVDPRNLEWM---R---EANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIAR 227 (290)
Q Consensus 155 ~~Gn~~i~L~~~gs~-~~y~~~~~dL~~i~~l---k---~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~ 227 (290)
+.|-.+ +++.-+.. +.+.- -|+..+..+ + .+++|++..++... . ++-..++..
T Consensus 223 ~~GI~d-IILDPg~ggf~ksl--~~~~~iRr~Al~~~~~~lgyPil~~~s~k~---------------~--~~~~~E~~~ 282 (450)
T PRK04165 223 AAGIKD-LVLDPGTENIKETL--DDFVQIRRAAIKKGDRPLGYPIIAFPIEAW---------------M--SDPMKEAAI 282 (450)
T ss_pred HcCCCc-EEECCCCchhhhhH--HHHHHHHhhhhhcccccCCCCEEEcchhhc---------------c--cchHHHHHH
Confidence 999855 45566553 43322 123333333 2 26889988666431 0 122233333
Q ss_pred HH--HHcCCCEEEEeeeCCCCCCC
Q 022892 228 TA--IAVGVDGVFMEVHDDPLNAP 249 (290)
Q Consensus 228 aA--va~GA~G~~IEkH~t~dka~ 249 (290)
|+ ++.||+ +||=.|+++...+
T Consensus 283 As~~~~kya~-i~Vl~~~~~~~~~ 305 (450)
T PRK04165 283 ASTLIAKYAD-ILVLHDIEPWELL 305 (450)
T ss_pred HHHHHHhCCc-EEEEcCCCHHHHh
Confidence 33 567887 8888888665543
No 53
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.59 E-value=0.43 Score=41.54 Aligned_cols=169 Identities=18% Similarity=0.185 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccc-cccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEE--eecCcc--cHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSS-FDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVT--DVHETV--QCE 101 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~-~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s--~~~d~~--~~~ 101 (290)
|.+..++.++.|.+ +++++.... |. . ..|++.++.+.+. .++++.. .+.++. .++
T Consensus 11 ~~~~~~~~~~~l~~-----~i~~ieig~~~~----------~----~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~ 71 (202)
T cd04726 11 DLEEALELAKKVPD-----GVDIIEAGTPLI----------K----SEGMEAVRALREAFPDKIIVADLKTADAGALEAE 71 (202)
T ss_pred CHHHHHHHHHHhhh-----cCCEEEcCCHHH----------H----HhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHH
Confidence 67788888888877 477777631 11 1 2334445555443 3666666 666664 345
Q ss_pred HHhh-hcceecccCCccC--CHHHHHHHHhcCCeEEEe-CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCC
Q 022892 102 EVGK-VADIIQIPAFLCR--QTDLLVAAAKTGKIINIK-KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLI 176 (290)
Q Consensus 102 ~l~~-~~d~~kIgs~~~~--n~~lL~~~a~~~~PVils-tG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~~~ 176 (290)
.+.+ .+|++-+...... ...+++++.+.++++++. -+.. |.+|+..+.. .|- +.++++-+... .+. ..
T Consensus 72 ~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~-t~~e~~~~~~----~~~-d~v~~~~~~~~~~~~-~~ 144 (202)
T cd04726 72 MAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVE-DPEKRAKLLK----LGV-DIVILHRGIDAQAAG-GW 144 (202)
T ss_pred HHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCC-CHHHHHHHHH----CCC-CEEEEcCcccccccC-CC
Confidence 5555 6999988765532 245777777889999986 4555 8888876432 344 45555432110 011 11
Q ss_pred CCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCC
Q 022892 177 VDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 245 (290)
Q Consensus 177 ~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~ 245 (290)
.....+..+++ .++||..+. |.+ +.-...+...||+|+++=+.++.
T Consensus 145 ~~~~~i~~~~~~~~~~i~~~G--------------------GI~---~~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 145 WPEDDLKKVKKLLGVKVAVAG--------------------GIT---PDTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred CCHHHHHHHHhhcCCCEEEEC--------------------CcC---HHHHHHHHhcCCCEEEEeehhcC
Confidence 23456666666 678998742 211 33455677889999999998853
No 54
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=96.59 E-value=0.075 Score=48.99 Aligned_cols=185 Identities=16% Similarity=0.141 Sum_probs=108.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCC-CCcccCCCCChhHHHHHHHHHHHh-cCCcEEEe----ecCcccHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANR-TSSKSFRGPGMVEGLKILEKVKIA-YDIPIVTD----VHETVQCE 101 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~r-ts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s~----~~d~~~~~ 101 (290)
+.+...++++.|.+ +|++.+=..+-....- +..+.|... ..++.++++.+. .+..+..- ..+.+.++
T Consensus 20 ~~~~k~~i~~~L~~----~Gv~~iEvg~~~~~~~~~~~~~~~~~---~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~ 92 (263)
T cd07943 20 TLEQVRAIARALDA----AGVPLIEVGHGDGLGGSSLNYGFAAH---TDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLK 92 (263)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEeecCCCCCCcccccCCCCC---ChHHHHHHHHHhccCCEEEEEecCCccCHHHHH
Confidence 67778888888888 5998875542110000 000112211 233344444322 24444322 34566677
Q ss_pred HHhh-hcceecccCCccC--C-HHHHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCC
Q 022892 102 EVGK-VADIIQIPAFLCR--Q-TDLLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDL 175 (290)
Q Consensus 102 ~l~~-~~d~~kIgs~~~~--n-~~lL~~~a~~~~PVils--tG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~ 175 (290)
...+ .++++.|...... + .+.++.+-..|+-|.+. .....+++++.+.++.+.+.|-+.|.|+...+.. +|.
T Consensus 93 ~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~-~P~- 170 (263)
T cd07943 93 MAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDSAGAM-LPD- 170 (263)
T ss_pred HHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCc-CHH-
Confidence 7666 6888877543322 1 23445555667766444 3444489999999999999998877777665531 332
Q ss_pred CCCchhHHHHHh-cCC-CEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 176 IVDPRNLEWMRE-ANC-PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 176 ~~dL~~i~~lk~-~~~-pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
++. +-+..+++ ++. |+++ +.|-+ +.+...-+.+|+.+||+ .|+.-+
T Consensus 171 ~v~-~lv~~l~~~~~~~~l~~-H~Hn~------------------~GlA~AN~laAi~aGa~--~vd~s~ 218 (263)
T cd07943 171 DVR-ERVRALREALDPTPVGF-HGHNN------------------LGLAVANSLAAVEAGAT--RIDGSL 218 (263)
T ss_pred HHH-HHHHHHHHhCCCceEEE-EecCC------------------cchHHHHHHHHHHhCCC--EEEeec
Confidence 122 34556676 676 9999 88864 22335557788999998 777665
No 55
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.58 E-value=0.43 Score=44.88 Aligned_cols=219 Identities=14% Similarity=0.076 Sum_probs=118.9
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCC---c------c------cCCCCChhH
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTS---S------K------SFRGPGMVE 74 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts---~------~------~~~g~~~~~ 74 (290)
.+...+|+.+=+|+.. ...+..+++.+ +|+-+|.-.+...+|+.. | . .|...|++.
T Consensus 5 Gl~l~nPi~~Asg~~~-----~~~e~~~~~~~----~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~ 75 (294)
T cd04741 5 GLTISPPLMNAAGPWC-----TTLEDLLELAA----SSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDY 75 (294)
T ss_pred CeeCCCCCEECCCCCC-----CCHHHHHHHHH----cCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHH
Confidence 4566788777778843 12344445444 476655444444334321 1 0 133344456
Q ss_pred HHHHHHHHHHh---cCCcEEEeecCcccHHHH------hh----hcceecc--------cCCcc-CCHHHH----HHHH-
Q 022892 75 GLKILEKVKIA---YDIPIVTDVHETVQCEEV------GK----VADIIQI--------PAFLC-RQTDLL----VAAA- 127 (290)
Q Consensus 75 ~l~~L~~~~~~---~Gi~~~s~~~d~~~~~~l------~~----~~d~~kI--------gs~~~-~n~~lL----~~~a- 127 (290)
.++.+++..++ .+.|++.+++-. .-+++ .+ .+|++-| +.+.+ .+.+.+ +++.
T Consensus 76 ~~~~i~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~ 154 (294)
T cd04741 76 YLEYIRTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKA 154 (294)
T ss_pred HHHHHHHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHH
Confidence 66677765543 689999999864 21211 11 1344433 22222 245444 4443
Q ss_pred hcCCeEEEeCCCCCCHHHHHHHHHHHHHc--CCCcEEEE---------e--ecC-----C--C-CCCC---CCCCchhHH
Q 022892 128 KTGKIINIKKGQFCASSVMVNSAEKVRLA--GNPNVMVC---------E--RGT-----M--F-GYND---LIVDPRNLE 183 (290)
Q Consensus 128 ~~~~PVilstG~~~tl~e~~~Ave~i~~~--Gn~~i~L~---------~--~gs-----~--~-~y~~---~~~dL~~i~ 183 (290)
.+.+||++|-....+.+++.++++.+... |-.-+++. | +.. . | ++.- ..+.|+.+.
T Consensus 155 ~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~ 234 (294)
T cd04741 155 AYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVR 234 (294)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHH
Confidence 35799999999987888888888888776 54445543 2 221 0 1 1110 112345566
Q ss_pred HHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHH
Q 022892 184 WMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRN 260 (290)
Q Consensus 184 ~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~ 260 (290)
.+++ . ++||+....= ..+ .-+...+.+||++++|=+-+ ..-.|.-
T Consensus 235 ~~~~~~~~~ipIig~GGI----------------~s~------~da~e~l~aGA~~Vqv~ta~----------~~~gp~~ 282 (294)
T cd04741 235 TFRRLLPSEIQIIGVGGV----------------LDG------RGAFRMRLAGASAVQVGTAL----------GKEGPKV 282 (294)
T ss_pred HHHHhcCCCCCEEEeCCC----------------CCH------HHHHHHHHcCCCceeEchhh----------hhcCchH
Confidence 6766 5 4898762111 112 22334456899987765432 1125677
Q ss_pred HHHHHHHHHH
Q 022892 261 LEELLEELVA 270 (290)
Q Consensus 261 l~~lv~~ir~ 270 (290)
++++.+.+++
T Consensus 283 ~~~i~~~L~~ 292 (294)
T cd04741 283 FARIEKELED 292 (294)
T ss_pred HHHHHHHHHh
Confidence 8888777665
No 56
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=96.57 E-value=0.37 Score=40.46 Aligned_cols=168 Identities=17% Similarity=0.195 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHH-------HHh
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCE-------EVG 104 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~-------~l~ 104 (290)
..+.++.+. +.|+++|........++... ....+.+.+.++..++++....+.....+ .+.
T Consensus 14 ~~~~~~~~~----~~G~~~v~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 81 (200)
T cd04722 14 PVELAKAAA----EAGADAIIVGTRSSDPEEAE--------TDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAAR 81 (200)
T ss_pred HHHHHHHHH----cCCCCEEEEeeEEECcccCC--------CccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHH
Confidence 344554444 46999988776553222210 01114567777788999888776533332 444
Q ss_pred h-hcceecccCCccC----CHHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-CCCCCCC
Q 022892 105 K-VADIIQIPAFLCR----QTDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM-FGYNDLI 176 (290)
Q Consensus 105 ~-~~d~~kIgs~~~~----n~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~-~~y~~~~ 176 (290)
+ .+|++.|...... -..+++++.+. +.||+++.......++.. +...|- ..+.++.+.. .......
T Consensus 82 ~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~-----~~~~g~-d~i~~~~~~~~~~~~~~~ 155 (200)
T cd04722 82 AAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAA-----AEEAGV-DEVGLGNGGGGGGGRDAV 155 (200)
T ss_pred HcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhh-----HHHcCC-CEEEEcCCcCCCCCccCc
Confidence 4 6899999988864 34566777665 899999987653322211 334453 4455544431 1111110
Q ss_pred -CCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 177 -VDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 177 -~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
..+..+..++. .++||+.+..=. . +.-+..++..||+|+++
T Consensus 156 ~~~~~~~~~~~~~~~~pi~~~GGi~-----------------~-----~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 156 PIADLLLILAKRGSKVPVIAGGGIN-----------------D-----PEDAAEALALGADGVIV 198 (200)
T ss_pred hhHHHHHHHHHhcCCCCEEEECCCC-----------------C-----HHHHHHHHHhCCCEEEe
Confidence 01233444445 688998732111 0 23344566679998875
No 57
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.57 E-value=0.19 Score=46.41 Aligned_cols=178 Identities=15% Similarity=0.165 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~ 107 (290)
...+.|+++.+ .|++-+...-.+. . -.+- ...+..+++++++.++|+.. -+.+.+++..+.+ .+
T Consensus 31 dp~~~a~~~~~----~g~~~l~i~Dl~~---~----~~~~--~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~ 97 (258)
T PRK01033 31 DPINAVRIFNE----KEVDELIVLDIDA---S----KRGS--EPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGV 97 (258)
T ss_pred CHHHHHHHHHH----cCCCEEEEEECCC---C----cCCC--cccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCC
Confidence 45788888887 4887766554442 1 0011 24477888888888999866 4667777766665 58
Q ss_pred ceecccCCccCCHHHHHHHHhc-C---CeEE--EeCC------------CCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 108 DIIQIPAFLCRQTDLLVAAAKT-G---KIIN--IKKG------------QFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~~-~---~PVi--lstG------------~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
+.+-||+....+..+++++++. + .+|- +++| ...+..+....++.+...|-..+++..+...
T Consensus 98 ~~vvigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~ 177 (258)
T PRK01033 98 EKVSINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRD 177 (258)
T ss_pred CEEEEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCC
Confidence 9999999999999999887642 2 2222 2333 0111122233444555667666666533221
Q ss_pred CCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHH-HcCCCEEEEee--eCCC
Q 022892 170 FGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAI-AVGVDGVFMEV--HDDP 245 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAv-a~GA~G~~IEk--H~t~ 245 (290)
-.|.- .|+..+..+++ .++||++...-. . . ..+. .+. ..|++|+++=+ ||+-
T Consensus 178 G~~~G--~d~~~i~~~~~~~~ipvIasGGv~-----------------s---~-eD~~-~l~~~~GvdgVivg~a~~~~~ 233 (258)
T PRK01033 178 GTMKG--YDLELLKSFRNALKIPLIALGGAG-----------------S---L-DDIV-EAILNLGADAAAAGSLFVFKG 233 (258)
T ss_pred CCcCC--CCHHHHHHHHhhCCCCEEEeCCCC-----------------C---H-HHHH-HHHHHCCCCEEEEcceeeeCc
Confidence 11222 37888888888 789998722211 1 1 2333 334 68999999985 6653
No 58
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=96.55 E-value=0.8 Score=46.51 Aligned_cols=218 Identities=15% Similarity=0.112 Sum_probs=125.6
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHH-HHHHHhcCCcEEEee
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKIL-EKVKIAYDIPIVTDV 94 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L-~~~~~~~Gi~~~s~~ 94 (290)
|+-|+||+--....+...+.|+++.+ .|||+|=-..-. .|. + .+-+.+. +.+....++++.-+-
T Consensus 151 ~~~v~aEI~~a~~l~~i~~~A~~~~~----~GADIIDIG~~s--t~p--------~-~~~v~~~V~~l~~~~~~pISIDT 215 (499)
T TIGR00284 151 PLRVVAEIPPTVAEDGIEGLAARMER----DGADMVALGTGS--FDD--------D-PDVVKEKVKTALDALDSPVIADT 215 (499)
T ss_pred CeEEEEEEcCCcchHHHHHHHHHHHH----CCCCEEEECCCc--CCC--------c-HHHHHHHHHHHHhhCCCcEEEeC
Confidence 46799998654455667888888877 599998665322 111 1 2234443 333344599999999
Q ss_pred cCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCC-CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Q 022892 95 HETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQ-FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGY 172 (290)
Q Consensus 95 ~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~-~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y 172 (290)
++++.++...+ .+|++-=-+.. +.-.++..+++.+.|+++-... ....+.....++.+.+.|-++ +++..|..+
T Consensus 216 ~~~~v~eaAL~aGAdiINsVs~~-~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~-IIlDPglg~-- 291 (499)
T TIGR00284 216 PTLDELYEALKAGASGVIMPDVE-NAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSK-VAADPSLSP-- 291 (499)
T ss_pred CCHHHHHHHHHcCCCEEEECCcc-chhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCc-EEEeCCCCc--
Confidence 99999988765 57765422222 2224666677888877765433 335688888899999988765 677887653
Q ss_pred CCCCCCchhHHHH---Hh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCC
Q 022892 173 NDLIVDPRNLEWM---RE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA 248 (290)
Q Consensus 173 ~~~~~dL~~i~~l---k~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka 248 (290)
.+.. -++.+..+ |+ +++|+.+-.+.-..... ..+.++ -..++..|..+||+ +|=.|-.-+|+
T Consensus 292 ~~~~-l~~sL~~l~~~r~~~~~Pil~GvSNvtel~d-------aDs~g~----naal~~~a~e~Ga~--ilrvhd~S~k~ 357 (499)
T TIGR00284 292 PLLG-LLESIIRFRRASRLLNVPLVFGAANVTELVD-------ADSHGV----NALLAAIALEAGAS--ILYVVEDSYKS 357 (499)
T ss_pred chHH-HHHHHHHHHHHHHhcCCcEEEeeccccCCCc-------cchhHH----HHHHHHHHHHcCCC--EEEEcCCcccc
Confidence 1110 13344444 44 78897553332211100 011111 12233456778998 78888533333
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHH
Q 022892 249 PVDGPTQWPLRNLEELLEELVAIA 272 (290)
Q Consensus 249 ~~D~~~sl~p~~l~~lv~~ir~~~ 272 (290)
. -...|+++-++....+.
T Consensus 358 r------~sV~E~~~A~~m~~~~~ 375 (499)
T TIGR00284 358 Y------RSTAEAAEAAKMASAAR 375 (499)
T ss_pred c------ccHHHHHHHHHHHHHHH
Confidence 2 23445555555444443
No 59
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=96.50 E-value=0.23 Score=45.97 Aligned_cols=182 Identities=18% Similarity=0.158 Sum_probs=111.6
Q ss_pred CCCeEEEEccCCc-------cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc
Q 022892 14 AEPFFLLAGPNVI-------ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY 86 (290)
Q Consensus 14 ~~~~~iIAgpcsi-------en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~ 86 (290)
.+.+-||||..-. .......++|+...+ .||+++.- .|.+..|. ..+..++.+++..
T Consensus 47 ~~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~----~GA~aisv-------lte~~~f~-----g~~~~l~~v~~~v 110 (260)
T PRK00278 47 AGKPAVIAEVKKASPSKGVIREDFDPVEIAKAYEA----GGAACLSV-------LTDERFFQ-----GSLEYLRAARAAV 110 (260)
T ss_pred cCCCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHh----CCCeEEEE-------ecccccCC-----CCHHHHHHHHHhc
Confidence 3458999987532 111123566666555 79998832 23333233 2367777788888
Q ss_pred CCcEEEee--cCcccHHHHhh-hcceecccCCccCCH---HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCc
Q 022892 87 DIPIVTDV--HETVQCEEVGK-VADIIQIPAFLCRQT---DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPN 160 (290)
Q Consensus 87 Gi~~~s~~--~d~~~~~~l~~-~~d~~kIgs~~~~n~---~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~ 160 (290)
.+|++.-= .++.+++.+.+ .+|++-+....+... .|++.+-..|+-+++... +.+|+..|.+ .|.+-
T Consensus 111 ~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh---~~~E~~~A~~----~gadi 183 (260)
T PRK00278 111 SLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVH---DEEELERALK----LGAPL 183 (260)
T ss_pred CCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHH----cCCCE
Confidence 99999733 34455666655 699998888886542 466777788999998876 8888877653 46554
Q ss_pred EEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 161 VMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 161 i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
|.+-.|. ......|+.....+.. . ..+++. -+... . +.-+..+..+||+|+
T Consensus 184 Igin~rd----l~~~~~d~~~~~~l~~~~p~~~~vIa-egGI~----------------t-----~ed~~~~~~~Gad~v 237 (260)
T PRK00278 184 IGINNRN----LKTFEVDLETTERLAPLIPSDRLVVS-ESGIF----------------T-----PEDLKRLAKAGADAV 237 (260)
T ss_pred EEECCCC----cccccCCHHHHHHHHHhCCCCCEEEE-EeCCC----------------C-----HHHHHHHHHcCCCEE
Confidence 4332221 2223456666666655 2 235543 22211 1 444556678899999
Q ss_pred EEeeeCC
Q 022892 238 FMEVHDD 244 (290)
Q Consensus 238 ~IEkH~t 244 (290)
++=+-++
T Consensus 238 lVGsaI~ 244 (260)
T PRK00278 238 LVGESLM 244 (260)
T ss_pred EECHHHc
Confidence 9987765
No 60
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=96.49 E-value=0.12 Score=47.26 Aligned_cols=101 Identities=16% Similarity=0.098 Sum_probs=66.6
Q ss_pred cCCccCCHHHH----HHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhc
Q 022892 113 PAFLCRQTDLL----VAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREA 188 (290)
Q Consensus 113 gs~~~~n~~lL----~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~ 188 (290)
|+..+.|.+++ +++.+.++||.+|....-+ ++....++.+...|-.-+|+ + +. |+...+|+..+..++ .
T Consensus 118 G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~-~~~~~la~~l~~aG~d~ihv-~--~~--~~g~~ad~~~I~~i~-~ 190 (233)
T cd02911 118 GEALLKDPERLSEFIKALKETGVPVSVKIRAGVD-VDDEELARLIEKAGADIIHV-D--AM--DPGNHADLKKIRDIS-T 190 (233)
T ss_pred chHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC-cCHHHHHHHHHHhCCCEEEE-C--cC--CCCCCCcHHHHHHhc-C
Confidence 66677777655 4455678999999987755 67777778888888764444 2 22 222346777776665 5
Q ss_pred CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 189 NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 189 ~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
++||+.+.+=. . ..-+...+..||||++|=+=
T Consensus 191 ~ipVIgnGgI~-----------------s-----~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 191 ELFIIGNNSVT-----------------T-----IESAKEMFSYGADMVSVARA 222 (233)
T ss_pred CCEEEEECCcC-----------------C-----HHHHHHHHHcCCCEEEEcCC
Confidence 78998743322 1 34455667789999988543
No 61
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.45 E-value=0.39 Score=42.84 Aligned_cols=161 Identities=17% Similarity=0.176 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe---------ec---CcccHH
Q 022892 34 RMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD---------VH---ETVQCE 101 (290)
Q Consensus 34 e~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~---------~~---d~~~~~ 101 (290)
+.+.++.+...+.|+.++... ++..++++.+..++|++-- +| +.++++
T Consensus 23 ~~~~~~a~a~~~~G~~~~~~~--------------------~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~ 82 (221)
T PRK01130 23 EIMAAMALAAVQGGAVGIRAN--------------------GVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVD 82 (221)
T ss_pred HHHHHHHHHHHHCCCeEEEcC--------------------CHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHH
Confidence 344555555555798766532 1345555556678888611 21 123455
Q ss_pred HHhh-hcceecccCCc------cCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CC
Q 022892 102 EVGK-VADIIQIPAFL------CRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GY 172 (290)
Q Consensus 102 ~l~~-~~d~~kIgs~~------~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y 172 (290)
.+.+ .+|++-+.... .+...+++++.+ .+.|++... . |++|++.+ ...|-.-+.+-.+|... ..
T Consensus 83 ~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v--~-t~ee~~~a----~~~G~d~i~~~~~g~t~~~~ 155 (221)
T PRK01130 83 ALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADC--S-TLEEGLAA----QKLGFDFIGTTLSGYTEETK 155 (221)
T ss_pred HHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeC--C-CHHHHHHH----HHcCCCEEEcCCceeecCCC
Confidence 5555 68877776554 234577788877 788888654 3 88887654 34565433321222210 01
Q ss_pred CCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 173 NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 173 ~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.....++..+..+++ .++||+...-=. . +.-+..+.++||+|+++=+.+
T Consensus 156 ~~~~~~~~~i~~i~~~~~iPvia~GGI~-----------------t-----~~~~~~~l~~GadgV~iGsai 205 (221)
T PRK01130 156 KPEEPDFALLKELLKAVGCPVIAEGRIN-----------------T-----PEQAKKALELGAHAVVVGGAI 205 (221)
T ss_pred CCCCcCHHHHHHHHHhCCCCEEEECCCC-----------------C-----HHHHHHHHHCCCCEEEEchHh
Confidence 122345677788887 789997621110 1 334556778999999998665
No 62
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=96.43 E-value=0.24 Score=45.50 Aligned_cols=175 Identities=13% Similarity=0.123 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHH-hcCCcEEEee-cCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKI-AYDIPIVTDV-HETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~-~~Gi~~~s~~-~d~~~~~~l~~ 105 (290)
+.+...++++.|.+ +|++.|=... |. ++ +..++.++++.+ ..+..+.+-. .+++.++.+.+
T Consensus 18 ~~~~k~~i~~~L~~----~Gv~~iE~g~----p~--------~~-~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~ 80 (259)
T cd07939 18 SREEKLAIARALDE----AGVDEIEVGI----PA--------MG-EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALR 80 (259)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEEec----CC--------CC-HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh
Confidence 56777888888877 5998875532 11 11 233344444443 2445554433 56777777665
Q ss_pred -hcceecccCCc--cCC---------------HHHHHHHHhcCCeEEEeCCC--CCCHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 106 -VADIIQIPAFL--CRQ---------------TDLLVAAAKTGKIINIKKGQ--FCASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 106 -~~d~~kIgs~~--~~n---------------~~lL~~~a~~~~PVilstG~--~~tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
.++++.+.... ..+ .+.++.+-+.|..|.+.--. ..+++.+...++.+...|-..|.|+.
T Consensus 81 ~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~D 160 (259)
T cd07939 81 CGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFAD 160 (259)
T ss_pred CCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCC
Confidence 57877664321 111 13445555677776654332 23799999999998888988888877
Q ss_pred ecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 166 RGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 166 ~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
..... +|.. +- .-+..+++ +++|+++ +.|-. ..+...-+.+|+..||+ +|+.-+
T Consensus 161 T~G~~-~P~~-v~-~lv~~l~~~~~~~l~~-H~Hn~------------------~Gla~An~laAi~aG~~--~vd~s~ 215 (259)
T cd07939 161 TVGIL-DPFT-TY-ELIRRLRAATDLPLEF-HAHND------------------LGLATANTLAAVRAGAT--HVSVTV 215 (259)
T ss_pred CCCCC-CHHH-HH-HHHHHHHHhcCCeEEE-EecCC------------------CChHHHHHHHHHHhCCC--EEEEec
Confidence 65531 3321 22 34566777 7789999 77753 22235567789999998 777655
No 63
>PLN02591 tryptophan synthase
Probab=96.37 E-value=0.5 Score=43.76 Aligned_cols=188 Identities=16% Similarity=0.206 Sum_probs=106.2
Q ss_pred eEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCccc-------------CCCCChhHHHHHHHHHH
Q 022892 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKS-------------FRGPGMVEGLKILEKVK 83 (290)
Q Consensus 17 ~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~-------------~~g~~~~~~l~~L~~~~ 83 (290)
+|+.||=- |.+..++.++.|.+ .|+|++=.+. |.+.|-. -+|..+.+.+++++++.
T Consensus 6 ~yi~aG~P---~~e~~~~~~~~l~~----~Gad~iElGi----PfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r 74 (250)
T PLN02591 6 PYITAGDP---DLDTTAEALRLLDA----CGADVIELGV----PYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVA 74 (250)
T ss_pred EEEeCCCC---CHHHHHHHHHHHHH----CCCCEEEECC----CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 35666633 56778888888887 5999987664 3333320 12334457788899988
Q ss_pred HhcCCc-EEEeecCccc-------HHHHhh-hcceecccCCcc-CCHHHHHHHHhcCCe-EEEeCCCCCCHHHHHHHHHH
Q 022892 84 IAYDIP-IVTDVHETVQ-------CEEVGK-VADIIQIPAFLC-RQTDLLVAAAKTGKI-INIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 84 ~~~Gi~-~~s~~~d~~~-------~~~l~~-~~d~~kIgs~~~-~n~~lL~~~a~~~~P-VilstG~~~tl~e~~~Ave~ 152 (290)
++..+| ++-+-+++-- ++.+.+ .+|-+-|+---. ...++.+.+.+.+.. |.+=+... +.+-+...++.
T Consensus 75 ~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt-~~~ri~~ia~~ 153 (250)
T PLN02591 75 PQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTT-PTERMKAIAEA 153 (250)
T ss_pred cCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHh
Confidence 778888 4445555421 222223 466666663222 244566666777874 44544555 55555555442
Q ss_pred HHHcCCCcEEEEe-ecCCCCCC-CCCCCch-hHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHH
Q 022892 153 VRLAGNPNVMVCE-RGTMFGYN-DLIVDPR-NLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIART 228 (290)
Q Consensus 153 i~~~Gn~~i~L~~-~gs~~~y~-~~~~dL~-~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~a 228 (290)
+.| -|-++- .|++ +-. ....++. .+..+|+ +++||.+-. ++ .. +.-+..
T Consensus 154 --~~g--FIY~Vs~~GvT-G~~~~~~~~~~~~i~~vk~~~~~Pv~vGF--GI---------------~~-----~e~v~~ 206 (250)
T PLN02591 154 --SEG--FVYLVSSTGVT-GARASVSGRVESLLQELKEVTDKPVAVGF--GI---------------SK-----PEHAKQ 206 (250)
T ss_pred --CCC--cEEEeeCCCCc-CCCcCCchhHHHHHHHHHhcCCCceEEeC--CC---------------CC-----HHHHHH
Confidence 222 343322 2221 211 1112333 3777788 789986611 11 11 344556
Q ss_pred HHHcCCCEEEEeeeC
Q 022892 229 AIAVGVDGVFMEVHD 243 (290)
Q Consensus 229 Ava~GA~G~~IEkH~ 243 (290)
....||||+++=+++
T Consensus 207 ~~~~GADGvIVGSal 221 (250)
T PLN02591 207 IAGWGADGVIVGSAM 221 (250)
T ss_pred HHhcCCCEEEECHHH
Confidence 788899999999988
No 64
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=96.34 E-value=0.3 Score=44.00 Aligned_cols=160 Identities=19% Similarity=0.296 Sum_probs=92.0
Q ss_pred HHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHH-HHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCcc
Q 022892 39 IKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKIL-EKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLC 117 (290)
Q Consensus 39 L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L-~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~ 117 (290)
+.+...++|.|+++-..-. +.. .+.+..+ +.+.+...+|++-+|-+..++- ..+|.+-++|=.-
T Consensus 16 ia~~v~~~gtDaI~VGGS~-----------gvt-~~~~~~~v~~ik~~~~lPvilfp~~~~~i~---~~aD~~~~~slln 80 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGSL-----------GIV-ESNLDQTVKKIKKITNLPVILFPGNVNGLS---RYADAVFFMSLLN 80 (205)
T ss_pred HHHHHHhcCCCEEEEcCcC-----------CCC-HHHHHHHHHHHHhhcCCCEEEECCCccccC---cCCCEEEEEEeec
Confidence 4444455799999875321 122 3445444 4444448999999988777654 5677777776322
Q ss_pred -CCHHHH-----HHH---HhcCC---e---EEEeCCC------------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCC
Q 022892 118 -RQTDLL-----VAA---AKTGK---I---INIKKGQ------------FCASSVMVNSAEKVRLAGNPNVMVCERGTMF 170 (290)
Q Consensus 118 -~n~~lL-----~~~---a~~~~---P---VilstG~------------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~ 170 (290)
+|...+ +.+ .+.+. | +++--|. ...++|...-+......|-+.++| +.++.+
T Consensus 81 s~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~L-e~~sGa 159 (205)
T TIGR01769 81 SADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYL-EAGSGA 159 (205)
T ss_pred CCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEE-EcCCCC
Confidence 232221 112 22222 2 2332222 136677666666666678776666 444433
Q ss_pred CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 171 GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 171 ~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
.|+ +|...+..+|+ .++|+.+- +|.|. ...+..+...||||+++
T Consensus 160 ~~~---v~~e~i~~Vk~~~~~Pv~vG--------------------GGIrs--~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 160 SYP---VNPETISLVKKASGIPLIVG--------------------GGIRS--PEIAYEIVLAGADAIVT 204 (205)
T ss_pred CCC---CCHHHHHHHHHhhCCCEEEe--------------------CCCCC--HHHHHHHHHcCCCEEEe
Confidence 333 57788888888 78998771 12211 34555666789999875
No 65
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.33 E-value=0.5 Score=42.18 Aligned_cols=116 Identities=19% Similarity=0.121 Sum_probs=70.7
Q ss_pred cHHHHhh-hcceecccCCcc------CCHHHHHHHHhcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC
Q 022892 99 QCEEVGK-VADIIQIPAFLC------RQTDLLVAAAKTG-KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF 170 (290)
Q Consensus 99 ~~~~l~~-~~d~~kIgs~~~------~n~~lL~~~a~~~-~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~ 170 (290)
+++.+.+ .++++-+..... ...++++++.+.+ +|++... . |.+|...+. ..|-.-+.+.++|...
T Consensus 84 ~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v--~-t~~ea~~a~----~~G~d~i~~~~~g~t~ 156 (219)
T cd04729 84 EVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADI--S-TLEEALNAA----KLGFDIIGTTLSGYTE 156 (219)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEEC--C-CHHHHHHHH----HcCCCEEEccCccccc
Confidence 5555555 588777755443 4456777777777 8888743 4 888876554 3565544333444211
Q ss_pred C-CCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 171 G-YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 171 ~-y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
. ......++..+..+++ +++||+....=+ . +.-+..+.++||+|+++=+.+
T Consensus 157 ~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~-----------------~-----~~~~~~~l~~GadgV~vGsal 209 (219)
T cd04729 157 ETAKTEDPDFELLKELRKALGIPVIAEGRIN-----------------S-----PEQAAKALELGADAVVVGSAI 209 (219)
T ss_pred cccCCCCCCHHHHHHHHHhcCCCEEEeCCCC-----------------C-----HHHHHHHHHCCCCEEEEchHH
Confidence 0 1112245678888887 789998732111 1 344556788999999986655
No 66
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=96.28 E-value=0.085 Score=47.50 Aligned_cols=112 Identities=14% Similarity=0.127 Sum_probs=75.6
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecC----------cccHHH----Hhh-
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHE----------TVQCEE----VGK- 105 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d----------~~~~~~----l~~- 105 (290)
+.+.+.|+++|..+.+.+ ... +. ...+.+..+.+.|+++|++++.+.+- ++.+.. ..+
T Consensus 83 ~~a~~~Ga~~v~~~~~~~-~~~----~~--~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~ 155 (235)
T cd00958 83 EDAVRLGADAVGVTVYVG-SEE----ER--EMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAEL 155 (235)
T ss_pred HHHHHCCCCEEEEEEecC-Cch----HH--HHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHH
Confidence 345567999988876654 111 10 12356778889999999999998754 344443 333
Q ss_pred hcceecccCCccCCHHHHHHHH-hcCCeEEEeCCCC-CCHHHHHHHHHHHHHcCCCcE
Q 022892 106 VADIIQIPAFLCRQTDLLVAAA-KTGKIINIKKGQF-CASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 106 ~~d~~kIgs~~~~n~~lL~~~a-~~~~PVilstG~~-~tl~e~~~Ave~i~~~Gn~~i 161 (290)
.+|++|++ . ..+.+.++++. ..+.||+++=|.. .|.++.+.-+..+...|-.-+
T Consensus 156 GaD~Ik~~-~-~~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv 211 (235)
T cd00958 156 GADIVKTK-Y-TGDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGV 211 (235)
T ss_pred CCCEEEec-C-CCCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 68999996 2 34677778765 5678998887742 378877776676777776543
No 67
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=96.24 E-value=0.4 Score=46.39 Aligned_cols=235 Identities=19% Similarity=0.194 Sum_probs=115.7
Q ss_pred CchhhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHH
Q 022892 2 DPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEK 81 (290)
Q Consensus 2 ~~~~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~ 81 (290)
|-||.+|.. .-+- +++|+.... -.+...++-.+|.+.|.++|...-.- +... .+....+.+.++.+++
T Consensus 49 d~s~~~~g~-~l~~-Pi~i~~MtG--gs~~~~~in~~La~~a~~~G~~~~~G-s~~~-------~~~~~~~~~~~~~vr~ 116 (352)
T PRK05437 49 DLSTEFLGK-KLSA-PFLINAMTG--GSEKAKEINRKLAEAAEELGIAMGVG-SQRA-------ALKDPELADSFSVVRK 116 (352)
T ss_pred cceeeECCc-eecC-CEEecccCC--CChhHHHHHHHHHHHHHHcCCCeEec-ccHh-------hccChhhHHHHHHHHH
Confidence 445666522 2233 466766654 33456777899999999999643221 1110 0110111233333333
Q ss_pred HHHhcCCcEEEeecC-------cccHHHHhh--hcceecccCCc---------cCCH----HHHHHHHh-cCCeEEEe-C
Q 022892 82 VKIAYDIPIVTDVHE-------TVQCEEVGK--VADIIQIPAFL---------CRQT----DLLVAAAK-TGKIINIK-K 137 (290)
Q Consensus 82 ~~~~~Gi~~~s~~~d-------~~~~~~l~~--~~d~~kIgs~~---------~~n~----~lL~~~a~-~~~PVils-t 137 (290)
+. -..||+..++= ++.+....+ ..|++.|.=.. -+++ +.++++.+ .+.||++| .
T Consensus 117 ~~--p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~ 194 (352)
T PRK05437 117 VA--PDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEV 194 (352)
T ss_pred HC--CCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 32 14555554433 333433333 25555554211 0233 34566544 48999999 4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-CCC----CC---------CCCCCc---hhHHHHHh-c-CCCEEEeCCC
Q 022892 138 GQFCASSVMVNSAEKVRLAGNPNVMVCERGT-MFG----YN---------DLIVDP---RNLEWMRE-A-NCPVVADVTH 198 (290)
Q Consensus 138 G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs-~~~----y~---------~~~~dL---~~i~~lk~-~-~~pV~~D~sH 198 (290)
|...+.+++. .+...|-+-|.+--+|. ++- +. ..+..+ ..+..+++ . ++||+.+.
T Consensus 195 g~g~s~~~a~----~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~G-- 268 (352)
T PRK05437 195 GFGISKETAK----RLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASG-- 268 (352)
T ss_pred CCCCcHHHHH----HHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEEC--
Confidence 4444544444 34556765555422222 110 00 001112 24444444 2 68887742
Q ss_pred CCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChH----HHHHHHHHHHHHHHH
Q 022892 199 SLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLR----NLEELLEELVAIAKV 274 (290)
Q Consensus 199 s~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~----~l~~lv~~ir~~~~~ 274 (290)
|.+.. .. +..++++||+++.+=+-+-- ++. .--++ -++.+.++++.+-..
T Consensus 269 ------------------GI~~~-~d-v~k~l~~GAd~v~ig~~~l~--~~~----~~g~~~v~~~i~~~~~eL~~~m~~ 322 (352)
T PRK05437 269 ------------------GIRNG-LD-IAKALALGADAVGMAGPFLK--AAL----EGGEEAVIELIEQWIEELKIAMFL 322 (352)
T ss_pred ------------------CCCCH-HH-HHHHHHcCCCEEEEhHHHHH--HHH----hccHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 23 34568899998877765411 110 01133 577778888888888
Q ss_pred hCCccccc
Q 022892 275 SKGKQRMN 282 (290)
Q Consensus 275 lg~~~~~~ 282 (290)
+|.+++-+
T Consensus 323 ~G~~~i~e 330 (352)
T PRK05437 323 TGAKNIAE 330 (352)
T ss_pred hCCCCHHH
Confidence 88755443
No 68
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=96.19 E-value=0.12 Score=49.78 Aligned_cols=185 Identities=13% Similarity=0.116 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCC-CCChhHHHHHHHHHHHhc-CCcEE--Eee--cCcccHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFR-GPGMVEGLKILEKVKIAY-DIPIV--TDV--HETVQCE 101 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~-g~~~~~~l~~L~~~~~~~-Gi~~~--s~~--~d~~~~~ 101 (290)
+.++..++++.|.+ +|++.|=..+-. .. ...+|+ ++.....+++++.++... +..+. ..| .+.++++
T Consensus 23 ~~~~~~~i~~~L~~----aGv~~IEvg~~~--g~-g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~ 95 (337)
T PRK08195 23 TLEQVRAIARALDA----AGVPVIEVTHGD--GL-GGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLK 95 (337)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEeecCC--CC-CCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHH
Confidence 56677777777777 599987553211 00 000121 211112344444443322 23332 222 2456676
Q ss_pred HHhh-hcceecccCCccCCH---HHHHHHHhcCCeEE--EeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCC
Q 022892 102 EVGK-VADIIQIPAFLCRQT---DLLVAAAKTGKIIN--IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDL 175 (290)
Q Consensus 102 ~l~~-~~d~~kIgs~~~~n~---~lL~~~a~~~~PVi--lstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~ 175 (290)
...+ .++++.|........ +.++.+-+.|+-|. +......+++++.+.++.+.+.|-..+.|+...... +|.
T Consensus 96 ~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~-~P~- 173 (337)
T PRK08195 96 MAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGAL-LPE- 173 (337)
T ss_pred HHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCC-CHH-
Confidence 6666 699988875433222 23344445676443 233333389999999999999998878777765531 222
Q ss_pred CCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 176 IVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 176 ~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
++- +-+..+++ + ++||++ +.|-+ ..+...-+.+|+.+||+ .|+.-+
T Consensus 174 ~v~-~~v~~l~~~l~~~i~ig~-H~Hnn------------------lGla~ANslaAi~aGa~--~iD~Sl 222 (337)
T PRK08195 174 DVR-DRVRALRAALKPDTQVGF-HGHNN------------------LGLGVANSLAAVEAGAT--RIDGSL 222 (337)
T ss_pred HHH-HHHHHHHHhcCCCCeEEE-EeCCC------------------cchHHHHHHHHHHhCCC--EEEecC
Confidence 222 34566676 6 689999 88864 12224557789999998 677655
No 69
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.18 E-value=0.052 Score=43.06 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHH-Hhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEE-VGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~-l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
...+.++++|+++.++ ++. +.+ .+|++-|.+..-.+.++.+++.+.|++|++.+.++.+++|....++..++
T Consensus 38 ~~~~~~~~~~~~~~~~------~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 38 RAEAFAEKYGIPVYTD------LEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp HHHHHHHHTTSEEESS------HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhH------HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 3445588999995555 343 443 69999999999999999999999999999999999999999999999988
Q ss_pred cCCC
Q 022892 156 AGNP 159 (290)
Q Consensus 156 ~Gn~ 159 (290)
.|..
T Consensus 112 ~~~~ 115 (120)
T PF01408_consen 112 KGVK 115 (120)
T ss_dssp HTSC
T ss_pred hCCE
Confidence 8753
No 70
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.13 E-value=0.082 Score=48.40 Aligned_cols=104 Identities=18% Similarity=0.106 Sum_probs=70.5
Q ss_pred ccCCccCCHHHHHH----HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh
Q 022892 112 IPAFLCRQTDLLVA----AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE 187 (290)
Q Consensus 112 Igs~~~~n~~lL~~----~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~ 187 (290)
-|+..+.+.+++.+ +.+.++||.+|.-...+-.+....++.+...|-.-|++ |+... +. ..+|++.|..+++
T Consensus 112 ~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~V-d~~~~-g~--~~a~~~~I~~i~~ 187 (231)
T TIGR00736 112 IGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHV-DAMYP-GK--PYADMDLLKILSE 187 (231)
T ss_pred CchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEE-eeCCC-CC--chhhHHHHHHHHH
Confidence 36667788876644 44568999999988645556677777888889887777 55321 11 1268899999998
Q ss_pred -c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 188 -A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 188 -~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
. ++||+.+-+=. . ..-+......||+|+||=+
T Consensus 188 ~~~~ipIIgNGgI~-----------------s-----~eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 188 EFNDKIIIGNNSID-----------------D-----IESAKEMLKAGADFVSVAR 221 (231)
T ss_pred hcCCCcEEEECCcC-----------------C-----HHHHHHHHHhCCCeEEEcH
Confidence 6 49998743322 1 2334444557999999855
No 71
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=96.08 E-value=0.52 Score=43.54 Aligned_cols=176 Identities=11% Similarity=0.127 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHH-hcCCcEEEee-cCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKI-AYDIPIVTDV-HETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~-~~Gi~~~s~~-~d~~~~~~l~~ 105 (290)
+.+..+++++.|.+ +|++.|=..++. .++ +.++.++.+.+ ..+..+.+=. -....++.+.+
T Consensus 18 ~~~~k~~i~~~L~~----~Gv~~iEvg~~~----~~~---------~~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~ 80 (268)
T cd07940 18 TPEEKLEIARQLDE----LGVDVIEAGFPA----ASP---------GDFEAVKRIAREVLNAEICGLARAVKKDIDAAAE 80 (268)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEEeCCC----CCH---------HHHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHH
Confidence 66778888888888 499887665332 111 22333333333 1244444322 34566666555
Q ss_pred -h----cceecccCC--cc-----------CCH----HHHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 106 -V----ADIIQIPAF--LC-----------RQT----DLLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 106 -~----~d~~kIgs~--~~-----------~n~----~lL~~~a~~~~PVils--tG~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
. ++++.|-.. +. .+. +.++.+.+.|..|.+. -+...+++.+...++.+...|-..|
T Consensus 81 ~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i 160 (268)
T cd07940 81 ALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTI 160 (268)
T ss_pred hCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 4 676666321 11 122 3445566678877775 3333489999999999988898888
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-cC---CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-AN---CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~~---~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
.|+...... +|.. +. .-+..+++ ++ +|+++ +.|-+ +.+...-+.+|+..||+
T Consensus 161 ~l~DT~G~~-~P~~-v~-~lv~~l~~~~~~~~i~l~~-H~Hn~------------------~GlA~An~laAi~aG~~-- 216 (268)
T cd07940 161 NIPDTVGYL-TPEE-FG-ELIKKLKENVPNIKVPISV-HCHND------------------LGLAVANSLAAVEAGAR-- 216 (268)
T ss_pred EECCCCCCC-CHHH-HH-HHHHHHHHhCCCCceeEEE-EecCC------------------cchHHHHHHHHHHhCCC--
Confidence 887776531 3322 22 45666777 65 89999 77764 22334556788999998
Q ss_pred EEeeeCC
Q 022892 238 FMEVHDD 244 (290)
Q Consensus 238 ~IEkH~t 244 (290)
+|+.-+.
T Consensus 217 ~iD~s~~ 223 (268)
T cd07940 217 QVECTIN 223 (268)
T ss_pred EEEEEee
Confidence 7777653
No 72
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.06 E-value=0.59 Score=44.26 Aligned_cols=109 Identities=20% Similarity=0.185 Sum_probs=62.6
Q ss_pred cCCccCCHHHHHHH-----HhcCCeEEEeCC--CCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-CCCCCCCCCchhHHH
Q 022892 113 PAFLCRQTDLLVAA-----AKTGKIINIKKG--QFCASSVMVNSAEKVRLAGNPNVMVCERGTM-FGYNDLIVDPRNLEW 184 (290)
Q Consensus 113 gs~~~~n~~lL~~~-----a~~~~PVilstG--~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~-~~y~~~~~dL~~i~~ 184 (290)
||..+.+.+++.++ ..++.||.+|.. ...+..++.+.++.+...|-.-+++ |..+. ..|.. ..++..+..
T Consensus 109 Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~v-h~r~~~~~~~~-~~~~~~i~~ 186 (319)
T TIGR00737 109 GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTL-HGRTRAQGYSG-EANWDIIAR 186 (319)
T ss_pred cchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEE-EcccccccCCC-chhHHHHHH
Confidence 44445555444332 235688888863 2212234555566667777655544 43332 22432 357888888
Q ss_pred HHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHH-HcCCCEEEEeeeCCC
Q 022892 185 MRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAI-AVGVDGVFMEVHDDP 245 (290)
Q Consensus 185 lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAv-a~GA~G~~IEkH~t~ 245 (290)
+++ .++||+.+.+=. . +.-+..++ ..||||+||=+-.--
T Consensus 187 i~~~~~ipvi~nGgI~-----------------~-----~~da~~~l~~~gad~VmigR~~l~ 227 (319)
T TIGR00737 187 VKQAVRIPVIGNGDIF-----------------S-----PEDAKAMLETTGCDGVMIGRGALG 227 (319)
T ss_pred HHHcCCCcEEEeCCCC-----------------C-----HHHHHHHHHhhCCCEEEEChhhhh
Confidence 888 789998743311 1 33455556 578999999765443
No 73
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=96.04 E-value=1.2 Score=41.13 Aligned_cols=188 Identities=20% Similarity=0.203 Sum_probs=110.5
Q ss_pred EEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcc------------c-CCCCChhHHHHHHHHHHH
Q 022892 18 FLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSK------------S-FRGPGMVEGLKILEKVKI 84 (290)
Q Consensus 18 ~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~------------~-~~g~~~~~~l~~L~~~~~ 84 (290)
|+.||=- +.+...+.++.|.+ .|+|++-.+. |.+.|- + -+|..+.+.++.++++++
T Consensus 15 y~~aG~P---~~~~~~~~~~~l~~----~Gad~iElGi----PfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~ 83 (256)
T TIGR00262 15 FVTAGDP---TLETSLEIIKTLIE----AGADALELGV----PFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQ 83 (256)
T ss_pred EEeCCCC---CHHHHHHHHHHHHH----cCCCEEEECC----CCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 4555522 55777788887777 5999987764 333332 0 123444567888888887
Q ss_pred h-cCCcE-EEeecCc-------ccHHHHhh-hcceecccCCccCC-HHHHHHHHhcCC-eEEEeCCCCCCHHHHHHHHHH
Q 022892 85 A-YDIPI-VTDVHET-------VQCEEVGK-VADIIQIPAFLCRQ-TDLLVAAAKTGK-IINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 85 ~-~Gi~~-~s~~~d~-------~~~~~l~~-~~d~~kIgs~~~~n-~~lL~~~a~~~~-PVilstG~~~tl~e~~~Ave~ 152 (290)
+ ..+|+ .-+.+++ .-++.+.+ .++.+-|+---... .++++.+-+.+. ++.+-+..+ +.+.+...++.
T Consensus 84 ~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T-~~eri~~i~~~ 162 (256)
T TIGR00262 84 KHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNA-DDERLKQIAEK 162 (256)
T ss_pred cCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCC-CHHHHHHHHHh
Confidence 6 68884 4466665 23444444 57777777544332 245666667776 466777766 77777765542
Q ss_pred HHHcCCCcEEEEee-cCCCCCC--CCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHH
Q 022892 153 VRLAGNPNVMVCER-GTMFGYN--DLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIART 228 (290)
Q Consensus 153 i~~~Gn~~i~L~~~-gs~~~y~--~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~a 228 (290)
...-+.++-. |.. +-. ...-.+.-+..+|+ ++.||.++--=+ . +.-+..
T Consensus 163 ----~~gfiy~vs~~G~T-G~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~-----------------~-----~e~~~~ 215 (256)
T TIGR00262 163 ----SQGFVYLVSRAGVT-GARNRAASALNELVKRLKAYSAKPVLVGFGIS-----------------K-----PEQVKQ 215 (256)
T ss_pred ----CCCCEEEEECCCCC-CCcccCChhHHHHHHHHHhhcCCCEEEeCCCC-----------------C-----HHHHHH
Confidence 2222333221 221 111 00112456677777 788987742211 1 445667
Q ss_pred HHHcCCCEEEEeeeCC
Q 022892 229 AIAVGVDGVFMEVHDD 244 (290)
Q Consensus 229 Ava~GA~G~~IEkH~t 244 (290)
+...||||+++=+.+.
T Consensus 216 ~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 216 AIDAGADGVIVGSAIV 231 (256)
T ss_pred HHHcCCCEEEECHHHH
Confidence 7889999999998873
No 74
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.03 E-value=0.083 Score=50.32 Aligned_cols=112 Identities=18% Similarity=0.153 Sum_probs=73.0
Q ss_pred ccCCccCCHHHHHHH----H-hc--CCeEEEeCCCCC-CHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCCCchhH
Q 022892 112 IPAFLCRQTDLLVAA----A-KT--GKIINIKKGQFC-ASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNL 182 (290)
Q Consensus 112 Igs~~~~n~~lL~~~----a-~~--~~PVilstG~~~-tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~~~~dL~~i 182 (290)
-||..+.+.+++.++ - .. ++||.+|..... +.+++...++.+.+.|-. .+.+|..+.. +|....+|+..+
T Consensus 108 ~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd-~i~Vh~Rt~~~~y~g~~~~~~~i 186 (312)
T PRK10550 108 GGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGAT-ELVVHGRTKEDGYRAEHINWQAI 186 (312)
T ss_pred CchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCC-EEEECCCCCccCCCCCcccHHHH
Confidence 455677888876654 2 23 489999964431 456677888888888864 4555666542 354334588889
Q ss_pred HHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHH-HcCCCEEEEeeeCCCC
Q 022892 183 EWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAI-AVGVDGVFMEVHDDPL 246 (290)
Q Consensus 183 ~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAv-a~GA~G~~IEkH~t~d 246 (290)
..+|+ .++||+.+.+=. . +.-+...+ ..|+||+||=+-.--+
T Consensus 187 ~~ik~~~~iPVi~nGdI~-----------------t-----~~da~~~l~~~g~DgVmiGRg~l~n 230 (312)
T PRK10550 187 GEIRQRLTIPVIANGEIW-----------------D-----WQSAQQCMAITGCDAVMIGRGALNI 230 (312)
T ss_pred HHHHhhcCCcEEEeCCcC-----------------C-----HHHHHHHHhccCCCEEEEcHHhHhC
Confidence 99998 789998854422 1 33444444 3689999998764333
No 75
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=96.02 E-value=0.091 Score=48.68 Aligned_cols=78 Identities=19% Similarity=0.169 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCcc----CCHHHHHHHHhc---CCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLC----RQTDLLVAAAKT---GKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~----~n~~lL~~~a~~---~~PVilstG~~~tl~ 144 (290)
.+.++.+.++++++|+.++.++++.++++.+.+ .++++-+..++. +++.+..++.+. ..|++--.|.. |++
T Consensus 146 ~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~-t~e 224 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIF-TPE 224 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCC-CHH
Confidence 367999999999999999999999999988777 699999998776 344555555543 24788888888 899
Q ss_pred HHHHHHH
Q 022892 145 VMVNSAE 151 (290)
Q Consensus 145 e~~~Ave 151 (290)
++..+.+
T Consensus 225 d~~~~~~ 231 (260)
T PRK00278 225 DLKRLAK 231 (260)
T ss_pred HHHHHHH
Confidence 9887643
No 76
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=96.02 E-value=0.22 Score=49.97 Aligned_cols=150 Identities=16% Similarity=0.141 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCH--------HHHHHHHhcCCeEEEeCCCCCCH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQT--------DLLVAAAKTGKIINIKKGQFCAS 143 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~--------~lL~~~a~~~~PVilstG~~~tl 143 (290)
.+.|+.|.++++++|+..+.|+++.++++...+ ..+++-|-.|++..+ .|+..+ ..+..++-..|.. |.
T Consensus 145 ~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~i-p~~~~~vseSGI~-t~ 222 (454)
T PRK09427 145 DEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLI-PADVIVISESGIY-TH 222 (454)
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhC-CCCcEEEEeCCCC-CH
Confidence 357999999999999999999999999998877 799999999998433 222222 2345666678999 99
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCCCc-hhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCccc
Q 022892 144 SVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDP-RNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLREL 221 (290)
Q Consensus 144 ~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~~~~dL-~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~ 221 (290)
+|+... + .| -+-+| .|++. ..+ |+ ..+..|....+.| |.=+ .
T Consensus 223 ~d~~~~----~-~~-~davL--iG~~lm~~~----d~~~~~~~L~~~~vKI---CGit-----------------~---- 266 (454)
T PRK09427 223 AQVREL----S-PF-ANGFL--IGSSLMAED----DLELAVRKLILGENKV---CGLT-----------------R---- 266 (454)
T ss_pred HHHHHH----H-hc-CCEEE--ECHHHcCCC----CHHHHHHHHhcccccc---CCCC-----------------C----
Confidence 998874 2 24 34444 45431 111 21 2222222112444 2222 1
Q ss_pred HHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHH
Q 022892 222 IPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEEL 268 (290)
Q Consensus 222 ~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~i 268 (290)
+.-+.+|..+||| +|=.-|.+ ..+-.+++++.+++.+.+
T Consensus 267 -~eda~~a~~~GaD--~lGfIf~~-----~SpR~V~~~~a~~i~~~l 305 (454)
T PRK09427 267 -PQDAKAAYDAGAV--YGGLIFVE-----KSPRYVSLEQAQEIIAAA 305 (454)
T ss_pred -HHHHHHHHhCCCC--EEeeEeCC-----CCCCCCCHHHHHHHHHhC
Confidence 5567788899988 55554432 234445666666666543
No 77
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=96.02 E-value=1.7 Score=42.84 Aligned_cols=146 Identities=15% Similarity=0.101 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhc-CCcEEEeecCcccHHHHh-------h-hcceecc-------------cCCccCCHHHH----HHHH
Q 022892 74 EGLKILEKVKIAY-DIPIVTDVHETVQCEEVG-------K-VADIIQI-------------PAFLCRQTDLL----VAAA 127 (290)
Q Consensus 74 ~~l~~L~~~~~~~-Gi~~~s~~~d~~~~~~l~-------~-~~d~~kI-------------gs~~~~n~~lL----~~~a 127 (290)
..++.++++.+.. +.+++.+++-..+.+.+. + .+|++-| |+....+.+++ +++.
T Consensus 85 ~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~ 164 (420)
T PRK08318 85 VNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVK 164 (420)
T ss_pred HHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHH
Confidence 3445555655555 588888877652223221 1 2454432 22233555544 4443
Q ss_pred -hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC--------------------C-CCCC---CCCCchhH
Q 022892 128 -KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM--------------------F-GYND---LIVDPRNL 182 (290)
Q Consensus 128 -~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~--------------------~-~y~~---~~~dL~~i 182 (290)
.+.+||.+|-... ..++...++.+...|-+-+++..+... + +|.- ..+.++.+
T Consensus 165 ~~~~~Pv~vKl~p~--~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v 242 (420)
T PRK08318 165 RGSRLPVIVKLTPN--ITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMV 242 (420)
T ss_pred hccCCcEEEEcCCC--cccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHH
Confidence 3579999999864 455666667677778766665322211 1 1211 22457788
Q ss_pred HHHHh-c---CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 183 EWMRE-A---NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 183 ~~lk~-~---~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
..+++ . ++||+.... -..+ .-+...+.+||++++|=+-.
T Consensus 243 ~~~~~~~~~~~ipIig~GG----------------I~s~------~da~e~i~aGA~~Vqi~ta~ 285 (420)
T PRK08318 243 AEIARDPETRGLPISGIGG----------------IETW------RDAAEFILLGAGTVQVCTAA 285 (420)
T ss_pred HHHHhccccCCCCEEeecC----------------cCCH------HHHHHHHHhCCChheeeeee
Confidence 88877 5 688865211 1112 22334466899988887654
No 78
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=95.97 E-value=0.099 Score=49.31 Aligned_cols=137 Identities=13% Similarity=0.152 Sum_probs=89.8
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
.|+++.++-+..++-.+||.-++..+++ ..+.+.++|..+.. .+|+| -.|.- +++|+...+..|...
T Consensus 4 ~lr~l~~~~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~--------~lG~p---D~g~l-t~~e~~~~~~~I~~~ 71 (285)
T TIGR02317 4 AFRAALAKEDILQIPGAINAMAALLAERAGFEAIYLSGAAVAA--------SLGLP---DLGIT-TLDEVAEDARRITRV 71 (285)
T ss_pred HHHHHHhCCCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHH--------hCCCC---CCCCC-CHHHHHHHHHHHHhc
Confidence 4666667777888889999999888777 58888888765543 23666 33433 788887776554311
Q ss_pred CCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCE
Q 022892 157 GNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDG 236 (290)
Q Consensus 157 Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G 236 (290)
.++||++|.+.+- |...-+....+.-..+|+.|
T Consensus 72 -------------------------------~~iPviaD~d~Gy----------------G~~~~v~~tv~~~~~aG~ag 104 (285)
T TIGR02317 72 -------------------------------TDLPLLVDADTGF----------------GEAFNVARTVREMEDAGAAA 104 (285)
T ss_pred -------------------------------cCCCEEEECCCCC----------------CCHHHHHHHHHHHHHcCCeE
Confidence 3589999999874 33333444556667899999
Q ss_pred EEEeeeCCCCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhC
Q 022892 237 VFMEVHDDPLNAP-VDGPTQWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 237 ~~IEkH~t~dka~-~D~~~sl~p~~l~~lv~~ir~~~~~lg 276 (290)
+.||-+..|.|.- ..++.-.+ .+++++.|+.+..+..
T Consensus 105 i~IEDq~~pK~cgh~~g~~lv~---~ee~~~kI~Aa~~a~~ 142 (285)
T TIGR02317 105 VHIEDQVLPKRCGHLPGKELVS---REEMVDKIAAAVDAKR 142 (285)
T ss_pred EEEecCCCccccCCCCCccccC---HHHHHHHHHHHHHhcc
Confidence 9999887664432 13333334 4456666666665544
No 79
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=95.82 E-value=1.6 Score=40.49 Aligned_cols=156 Identities=18% Similarity=0.129 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH---HHHHHHHHHh-cCCcEEEeecCcccHHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG---LKILEKVKIA-YDIPIVTDVHETVQCEEV 103 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~---l~~L~~~~~~-~Gi~~~s~~~d~~~~~~l 103 (290)
+.++..+.|+++++ .||+++.-..... .|. ......++. +.++-+..++ .++|+..+-++++.++..
T Consensus 21 ~~~~~~~~a~~~~~----~GA~iIDIG~~st----~p~-~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~a 91 (257)
T TIGR01496 21 SVDKAVAHAERMLE----EGADIIDVGGEST----RPG-ADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAA 91 (257)
T ss_pred CHHHHHHHHHHHHH----CCCCEEEECCCCC----CCC-CCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHH
Confidence 67888888888887 5999998854331 122 111111333 4444454445 499999999999999887
Q ss_pred hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeC--CCCCC----------HHH----HHHHHHHHHHcCCC-cEEEEe
Q 022892 104 GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKK--GQFCA----------SSV----MVNSAEKVRLAGNP-NVMVCE 165 (290)
Q Consensus 104 ~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilst--G~~~t----------l~e----~~~Ave~i~~~Gn~-~i~L~~ 165 (290)
.+ .++++-=.+..- .-.++..+++.+.|+++-. |...+ .++ ....++.+.+.|-+ +=+++.
T Consensus 92 l~~G~~iINsis~~~-~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilD 170 (257)
T TIGR01496 92 LEAGADIINDVSGGQ-DPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILD 170 (257)
T ss_pred HHcCCCEEEECCCCC-CchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 66 566553222221 3457777888999988843 33222 222 34445566777742 335566
Q ss_pred ecCCCCCCCCCCCc---hhHHHHHhcCCCEEE
Q 022892 166 RGTMFGYNDLIVDP---RNLEWMREANCPVVA 194 (290)
Q Consensus 166 ~gs~~~y~~~~~dL---~~i~~lk~~~~pV~~ 194 (290)
.|..|.- ...-++ +.+..++++++|+.+
T Consensus 171 Pg~gf~k-s~~~~~~~l~~i~~l~~~~~p~l~ 201 (257)
T TIGR01496 171 PGIGFGK-TPEHNLELLKHLEEFVALGYPLLV 201 (257)
T ss_pred CCCCccc-CHHHHHHHHHHHHHHHhCCCcEEE
Confidence 6654321 111133 455555556789754
No 80
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=95.81 E-value=0.91 Score=44.27 Aligned_cols=176 Identities=11% Similarity=0.081 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecC---cccHHHHh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHE---TVQCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d---~~~~~~l~ 104 (290)
+.+..+++|+.|.++ |++.|=... |. .+ +..++.++.+.+ .|+......|. ...++.+.
T Consensus 24 s~e~k~~ia~~L~~~----GV~~IE~G~----p~--------~~-~~~~e~i~~i~~-~~~~~~i~~~~r~~~~di~~a~ 85 (378)
T PRK11858 24 TNEEKLAIARMLDEI----GVDQIEAGF----PA--------VS-EDEKEAIKAIAK-LGLNASILALNRAVKSDIDASI 85 (378)
T ss_pred CHHHHHHHHHHHHHh----CCCEEEEeC----CC--------cC-hHHHHHHHHHHh-cCCCeEEEEEcccCHHHHHHHH
Confidence 678889999999885 998875431 11 11 233444444433 46665555555 55666655
Q ss_pred h-hcceecccC--Ccc-----------CCH----HHHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcEEEE
Q 022892 105 K-VADIIQIPA--FLC-----------RQT----DLLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRLAGNPNVMVC 164 (290)
Q Consensus 105 ~-~~d~~kIgs--~~~-----------~n~----~lL~~~a~~~~PVils--tG~~~tl~e~~~Ave~i~~~Gn~~i~L~ 164 (290)
+ .++++.|.- .+. .+. +.++.+...|..|.+. -+.-.+++.+.+.++.+...|-..|.|+
T Consensus 86 ~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~ 165 (378)
T PRK11858 86 DCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFC 165 (378)
T ss_pred hCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 5 577655532 222 011 2445566678888776 3434478999999999888998888888
Q ss_pred eecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 165 ERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 165 ~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
..... -.|.. + ...+..+++ +++|+++ +.|-. ..+...-+.+|+.+||+ .|+.-+
T Consensus 166 DT~G~-~~P~~-v-~~lv~~l~~~~~~~l~~-H~Hnd------------------~GlA~AN~laAv~aGa~--~vd~tv 221 (378)
T PRK11858 166 DTVGI-LDPFT-M-YELVKELVEAVDIPIEV-HCHND------------------FGMATANALAGIEAGAK--QVHTTV 221 (378)
T ss_pred ccCCC-CCHHH-H-HHHHHHHHHhcCCeEEE-EecCC------------------cCHHHHHHHHHHHcCCC--EEEEee
Confidence 77653 12221 1 134556676 7899999 77753 22334557789999998 777765
Q ss_pred CC
Q 022892 244 DP 245 (290)
Q Consensus 244 t~ 245 (290)
..
T Consensus 222 ~G 223 (378)
T PRK11858 222 NG 223 (378)
T ss_pred cc
Confidence 43
No 81
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=95.80 E-value=0.58 Score=44.04 Aligned_cols=181 Identities=11% Similarity=0.095 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-h
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-V 106 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~ 106 (290)
+.++.+++|+.|.+ +|++.+=..+|.. |.-.|. +. +..+.++.+.+..|..+..-..+...++...+ .
T Consensus 24 s~e~k~~ia~~L~~----~Gv~~IEvgsf~~-p~~~p~----~~--d~~e~~~~l~~~~~~~~~~l~~~~~~ie~A~~~g 92 (287)
T PRK05692 24 PTADKIALIDRLSA----AGLSYIEVASFVS-PKWVPQ----MA--DAAEVMAGIQRRPGVTYAALTPNLKGLEAALAAG 92 (287)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEeCCCcC-cccccc----cc--cHHHHHHhhhccCCCeEEEEecCHHHHHHHHHcC
Confidence 77888999999998 4999887776652 322222 11 12333444443456666555567778887766 5
Q ss_pred cceecccCCcc-----CC--------H----HHHHHHHhcCCeEE--Ee-------CCCCCCHHHHHHHHHHHHHcCCCc
Q 022892 107 ADIIQIPAFLC-----RQ--------T----DLLVAAAKTGKIIN--IK-------KGQFCASSVMVNSAEKVRLAGNPN 160 (290)
Q Consensus 107 ~d~~kIgs~~~-----~n--------~----~lL~~~a~~~~PVi--ls-------tG~~~tl~e~~~Ave~i~~~Gn~~ 160 (290)
++++.|..... .| . +.++.+-+.|+-|. ++ -|.. +++.+.+.++.+...|-+.
T Consensus 93 ~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~d~ 171 (287)
T PRK05692 93 ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEV-PPEAVADVAERLFALGCYE 171 (287)
T ss_pred CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCC-CHHHHHHHHHHHHHcCCcE
Confidence 77665552221 11 1 23444445677664 22 1233 8999999999999999988
Q ss_pred EEEEeecCCCCCCCCCCCchhHHHHHh-cC-CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEE
Q 022892 161 VMVCERGTMFGYNDLIVDPRNLEWMRE-AN-CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVF 238 (290)
Q Consensus 161 i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~-~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~ 238 (290)
|.|+.....- .|. ++- .-+..+++ ++ +|+++ +.|.. +.+...-+.+|+.+||+ .
T Consensus 172 i~l~DT~G~~-~P~-~v~-~lv~~l~~~~~~~~i~~-H~Hn~------------------~Gla~AN~laA~~aG~~--~ 227 (287)
T PRK05692 172 ISLGDTIGVG-TPG-QVR-AVLEAVLAEFPAERLAG-HFHDT------------------YGQALANIYASLEEGIT--V 227 (287)
T ss_pred EEeccccCcc-CHH-HHH-HHHHHHHHhCCCCeEEE-EecCC------------------CCcHHHHHHHHHHhCCC--E
Confidence 8888776531 122 121 34566676 65 89998 77763 22335557789999998 7
Q ss_pred EeeeCC
Q 022892 239 MEVHDD 244 (290)
Q Consensus 239 IEkH~t 244 (290)
|+.-..
T Consensus 228 id~s~~ 233 (287)
T PRK05692 228 FDASVG 233 (287)
T ss_pred EEEEcc
Confidence 776654
No 82
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=95.78 E-value=0.82 Score=41.52 Aligned_cols=170 Identities=15% Similarity=0.183 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~ 107 (290)
.-+++|+.+.+ .|++.+...-++. ..+. ...+..+++++++.++|+.. =+-+.++++.+-+ .+
T Consensus 36 dp~~~a~~~~~----~g~~~l~i~DLd~--------~~~~--~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga 101 (233)
T cd04723 36 DPLDVARAYKE----LGFRGLYIADLDA--------IMGR--GDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGA 101 (233)
T ss_pred CHHHHHHHHHH----CCCCEEEEEeCcc--------ccCC--CccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCC
Confidence 45788888887 4988776655542 1111 24577888888888888776 4666677777655 68
Q ss_pred ceecccCCccCCHHHHHHHHh-cCC-eEEEe----CC------CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCC
Q 022892 108 DIIQIPAFLCRQTDLLVAAAK-TGK-IINIK----KG------QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDL 175 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~-~~~-PVils----tG------~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~ 175 (290)
+-+-||+...+| ++++++++ .+. -|+++ .| ...++.++... +... -..+++.....- +. ..
T Consensus 102 ~~viigt~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~li~~di~~~-G~-~~ 174 (233)
T cd04723 102 SRVIVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRR---LAKW-PEELIVLDIDRV-GS-GQ 174 (233)
T ss_pred CeEEEcceeccc-hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHH---HHHh-CCeEEEEEcCcc-cc-CC
Confidence 889999999999 99988654 444 35544 23 23346665554 4444 456787777542 11 12
Q ss_pred CCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 176 IVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 176 ~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
-.|+..+..+.+ .++||++ +- |.+. ..-...+..+|++|+++=+-+
T Consensus 175 g~~~~~~~~i~~~~~ipvi~-~G-------------------Gi~s--~edi~~l~~~G~~~vivGsal 221 (233)
T cd04723 175 GPDLELLERLAARADIPVIA-AG-------------------GVRS--VEDLELLKKLGASGALVASAL 221 (233)
T ss_pred CcCHHHHHHHHHhcCCCEEE-eC-------------------CCCC--HHHHHHHHHcCCCEEEEehHH
Confidence 346777777777 6899987 11 2111 223345567899999998765
No 83
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=95.75 E-value=1.7 Score=40.42 Aligned_cols=205 Identities=18% Similarity=0.191 Sum_probs=119.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCCh--hHHHHH-HHHHHHhcCCcEEEeecCcccHHH--
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGM--VEGLKI-LEKVKIAYDIPIVTDVHETVQCEE-- 102 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~--~~~l~~-L~~~~~~~Gi~~~s~~~d~~~~~~-- 102 (290)
+.+..+++|.+=.+.-.+.|+|.|..+.|...|.. +..+. -..+.. ..++.++.++|+-..++--.....
T Consensus 23 ~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~-----~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~aala 97 (254)
T PF03437_consen 23 SMEEIIERAVREAEALEEGGVDGIIVENMGDVPYP-----KRVGPETVAAMARIAREVRREVSVPVGVNVLRNDPKAALA 97 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCcc-----CCCCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCHHHHH
Confidence 56788888888777778899999999887643421 12221 122332 446668889999888776333332
Q ss_pred Hhh--hcceecccCCcc-----------CCHHHHHHHHhcCCe------EEEeCCCCCCHHHHHHHHHHH-HHcCCCcEE
Q 022892 103 VGK--VADIIQIPAFLC-----------RQTDLLVAAAKTGKI------INIKKGQFCASSVMVNSAEKV-RLAGNPNVM 162 (290)
Q Consensus 103 l~~--~~d~~kIgs~~~-----------~n~~lL~~~a~~~~P------VilstG~~~tl~e~~~Ave~i-~~~Gn~~i~ 162 (290)
++. ..+|+.+..+.= .-.+++|+=.+++.. |..|.+....-.++..+++.. ...+. + .
T Consensus 98 iA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~a-D-a 175 (254)
T PF03437_consen 98 IAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVERGGA-D-A 175 (254)
T ss_pred HHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHHhcCC-C-E
Confidence 232 588888655421 123466655444444 334444433222233333322 33333 3 3
Q ss_pred EEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 163 VCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 163 L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
||-.|...+.+ .++.-+...|+ .++||.+ .|-.+ .. -+.. .-.-|||+++=+
T Consensus 176 viVtG~~TG~~---~~~~~l~~vr~~~~~PVlv-GSGvt---------------~~------Ni~~--~l~~ADG~IVGS 228 (254)
T PF03437_consen 176 VIVTGKATGEP---PDPEKLKRVREAVPVPVLV-GSGVT---------------PE------NIAE--YLSYADGAIVGS 228 (254)
T ss_pred EEECCcccCCC---CCHHHHHHHHhcCCCCEEE-ecCCC---------------HH------HHHH--HHHhCCEEEEee
Confidence 44466554544 36778888888 6799988 33221 01 1111 112388899999
Q ss_pred eCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 022892 242 HDDPLNAPVDGPTQWPLRNLEELLEELV 269 (290)
Q Consensus 242 H~t~dka~~D~~~sl~p~~l~~lv~~ir 269 (290)
+|--|-.+ ...++++-.++||+.++
T Consensus 229 ~~K~~G~~---~n~VD~~Rv~~fm~~v~ 253 (254)
T PF03437_consen 229 YFKKDGKW---ENPVDPERVRRFMEAVK 253 (254)
T ss_pred eeeeCCEe---CCcCCHHHHHHHHHHhh
Confidence 99443333 23578999999998876
No 84
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=95.73 E-value=1.1 Score=38.13 Aligned_cols=134 Identities=21% Similarity=0.129 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~ 152 (290)
.-++.+++.|..+|+.++..- .++.+.+ .+|.+-.+...... ..++..-..++.+.++.. |.+|+..+.+
T Consensus 43 ~~~~~i~~~~~~~~~~l~~~~----~~~~a~~~g~~~vh~~~~~~~~-~~~~~~~~~~~~~g~~~~---t~~~~~~~~~- 113 (196)
T cd00564 43 ELARALRELCRKYGVPLIIND----RVDLALAVGADGVHLGQDDLPV-AEARALLGPDLIIGVSTH---SLEEALRAEE- 113 (196)
T ss_pred HHHHHHHHHHHHhCCeEEEeC----hHHHHHHcCCCEEecCcccCCH-HHHHHHcCCCCEEEeeCC---CHHHHHHHhh-
Confidence 346677788888999998742 3555555 58888777755433 333555556777887763 7777766543
Q ss_pred HHHcCCCcEEEEeec---CCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHH
Q 022892 153 VRLAGNPNVMVCERG---TMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIART 228 (290)
Q Consensus 153 i~~~Gn~~i~L~~~g---s~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~a 228 (290)
.|-+.+.+...- +..++ .....+..+..+++ .++||..+. |.. ..-...
T Consensus 114 ---~g~d~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pv~a~G--------------------Gi~---~~~i~~ 166 (196)
T cd00564 114 ---LGADYVGFGPVFPTPTKPGA-GPPLGLELLREIAELVEIPVVAIG--------------------GIT---PENAAE 166 (196)
T ss_pred ---cCCCEEEECCccCCCCCCCC-CCCCCHHHHHHHHHhCCCCEEEEC--------------------CCC---HHHHHH
Confidence 465444442221 11111 02245667777776 688998742 211 233445
Q ss_pred HHHcCCCEEEEeeeC
Q 022892 229 AIAVGVDGVFMEVHD 243 (290)
Q Consensus 229 Ava~GA~G~~IEkH~ 243 (290)
...+|++|+++-+-+
T Consensus 167 ~~~~Ga~~i~~g~~i 181 (196)
T cd00564 167 VLAAGADGVAVISAI 181 (196)
T ss_pred HHHcCCCEEEEehHh
Confidence 677899999887665
No 85
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.73 E-value=0.084 Score=48.84 Aligned_cols=77 Identities=16% Similarity=0.056 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCH----HHHHHHH-h--cCCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQT----DLLVAAA-K--TGKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~----~lL~~~a-~--~~~PVilstG~~~tl~ 144 (290)
.+.++.|.++|.++|+.++.|+++.++++...+ ..+++-|-.|++..+ ..-..++ . .+..++-..|.. |.+
T Consensus 137 ~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~IsESGI~-t~~ 215 (247)
T PRK13957 137 PSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPNIVKVGESGIE-SRS 215 (247)
T ss_pred HHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEcCCCC-CHH
Confidence 468999999999999999999999999998877 799999999988422 2222222 2 244566668888 999
Q ss_pred HHHHHH
Q 022892 145 VMVNSA 150 (290)
Q Consensus 145 e~~~Av 150 (290)
++....
T Consensus 216 d~~~l~ 221 (247)
T PRK13957 216 DLDKFR 221 (247)
T ss_pred HHHHHH
Confidence 988754
No 86
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=95.69 E-value=1.8 Score=40.24 Aligned_cols=202 Identities=17% Similarity=0.147 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH-HHHHHHhcCCcEEEeecCcccHHHHhhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI-LEKVKIAYDIPIVTDVHETVQCEEVGKV 106 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~-L~~~~~~~Gi~~~s~~~d~~~~~~l~~~ 106 (290)
+.+..++.|+++++ .||+++=-..-. ++ .-+ .+-+.+ ++.+.+..++|+.-+-++++.++...+.
T Consensus 23 d~~~i~~~A~~~~~----~GAdiIDVg~~~-----~~----~eE-~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~ 88 (261)
T PRK07535 23 DAAFIQKLALKQAE----AGADYLDVNAGT-----AV----EEE-PETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKV 88 (261)
T ss_pred CHHHHHHHHHHHHH----CCCCEEEECCCC-----Cc----hhH-HHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHh
Confidence 45667777777776 599987654211 10 001 122333 4444455699998899988888776552
Q ss_pred ---ccee-cccCCccCCHHHHHHHHhcCCeEEEe----CCCCCCH----HHHHHHHHHHHHcCCC-cEEEEeecCCC-CC
Q 022892 107 ---ADII-QIPAFLCRQTDLLVAAAKTGKIINIK----KGQFCAS----SVMVNSAEKVRLAGNP-NVMVCERGTMF-GY 172 (290)
Q Consensus 107 ---~d~~-kIgs~~~~n~~lL~~~a~~~~PVils----tG~~~tl----~e~~~Ave~i~~~Gn~-~i~L~~~gs~~-~y 172 (290)
.+++ -|.+.+-....++..+++.+.||++- .|+..|. +.+...++.+.+.|-+ +=+++..|..+ +.
T Consensus 89 ~~G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~ 168 (261)
T PRK07535 89 AKGPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSA 168 (261)
T ss_pred CCCCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccC
Confidence 3332 22222222335667788889999863 3444344 4455566677778853 45777888752 22
Q ss_pred CCCCCC---chhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCC--CcccHHHH-HHHHHHcCCCEEEEeeeCC
Q 022892 173 NDLIVD---PRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGG--LRELIPCI-ARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 173 ~~~~~d---L~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g--~~~~~~~~-a~aAva~GA~G~~IEkH~t 244 (290)
.. .-+ |+.+..+++ + ++|+.+-.| +.|.| .|..+..+ ...|+.+|.+..++-..
T Consensus 169 ~~-~~~~~~l~~i~~l~~~~pg~p~l~G~S---------------n~Sfglp~r~~in~~fl~~a~~~Gl~~aI~np~-- 230 (261)
T PRK07535 169 AQ-DAGPEVLETIRRIKELYPKVHTTCGLS---------------NISFGLPNRKLINRAFLVMAMGAGMDSAILDPL-- 230 (261)
T ss_pred Ch-HHHHHHHHHHHHHHHhCCCCCEEEEeC---------------CCccCCcchHHHHHHHHHHHHHcCCCEEeeCCC--
Confidence 11 123 677777777 5 899765222 11222 23333332 33567889886665432
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 245 PLNAPVDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 245 ~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
| +.|++.++..+..+|.
T Consensus 231 ------~----------~~~~~~~~~~~~l~g~ 247 (261)
T PRK07535 231 ------D----------RDLMGAIAAAEALLGQ 247 (261)
T ss_pred ------C----------HHHHHHHHHHHHHhCC
Confidence 1 4567777777777766
No 87
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=95.68 E-value=0.76 Score=40.50 Aligned_cols=180 Identities=13% Similarity=0.026 Sum_probs=97.2
Q ss_pred HHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh--cCCcEEEeecCcccHHHHhh-hcceecccCCccCCH
Q 022892 44 TKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA--YDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQT 120 (290)
Q Consensus 44 ~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~--~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~ 120 (290)
.++|++++=+-.+++.||. .. .+..+.|.+.+.. .++.++....-.+-.+.+.+ .+|++|+++.+ ..
T Consensus 16 ~~~Gvd~ig~i~~~~s~R~-------v~-~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~e--~~ 85 (203)
T cd00405 16 AEAGADAIGFIFAPKSPRY-------VS-PEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGDE--SP 85 (203)
T ss_pred HHcCCCEEEEecCCCCCCC-------CC-HHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC--CH
Confidence 3469998877655543442 11 4567778888877 66666554432222234444 48999999876 34
Q ss_pred HHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC--CCCCCCchhHHHHHhcCCCEEEeCC
Q 022892 121 DLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGY--NDLIVDPRNLEWMREANCPVVADVT 197 (290)
Q Consensus 121 ~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y--~~~~~dL~~i~~lk~~~~pV~~D~s 197 (290)
+.++++-+ .+.+++..-|.+ +..+... ... ...+. +.+|+...+...+ .....|+..+..++ ..+||++ .-
T Consensus 86 ~~~~~l~~~~~~~~i~~i~~~-~~~~~~~-~~~-~~~~a-D~il~dt~~~~~~Gg~g~~~~~~~l~~~~-~~~Pvil-aG 159 (203)
T cd00405 86 EYCAQLRARLGLPVIKAIRVK-DEEDLEK-AAA-YAGEV-DAILLDSKSGGGGGGTGKTFDWSLLRGLA-SRKPVIL-AG 159 (203)
T ss_pred HHHHHHHhhcCCcEEEEEecC-ChhhHHH-hhh-ccccC-CEEEEcCCCCCCCCCCcceEChHHhhccc-cCCCEEE-EC
Confidence 45555543 467777444444 3333221 111 11233 4567776543111 12345665555444 5689877 11
Q ss_pred CCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC-CCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHH
Q 022892 198 HSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG-VDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEE 267 (290)
Q Consensus 198 Hs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G-A~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ 267 (290)
|.. +.-...+++.| ++|+-+=+.+.-. +-.-+++.++++++.
T Consensus 160 -------------------GI~---~~Nv~~~i~~~~~~gvdv~S~ie~~------pg~kd~~ki~~~~~~ 202 (203)
T cd00405 160 -------------------GLT---PDNVAEAIRLVRPYGVDVSSGVETS------PGIKDPEKIRAFIEA 202 (203)
T ss_pred -------------------CCC---hHHHHHHHHhcCCCEEEcCCcccCC------CCCcCHHHHHHHHHh
Confidence 210 22233456667 8888777766432 333567777777664
No 88
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=95.60 E-value=1.1 Score=40.84 Aligned_cols=188 Identities=16% Similarity=0.170 Sum_probs=105.4
Q ss_pred eEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCccc-------------CCCCChhHHHHHHHHHH
Q 022892 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKS-------------FRGPGMVEGLKILEKVK 83 (290)
Q Consensus 17 ~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~-------------~~g~~~~~~l~~L~~~~ 83 (290)
+|+.||=- |.+...+.+++|.+ +|+|++=.+. |-+.|.. -.|..+..++++++++.
T Consensus 4 ~y~~~G~P---~~~~~~~~~~~l~~----~Gad~iel~i----PfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr 72 (242)
T cd04724 4 PYITAGDP---DLETTLEILKALVE----AGADIIELGI----PFSDPVADGPVIQAASERALANGVTLKDVLELVKEIR 72 (242)
T ss_pred EEEeCCCC---CHHHHHHHHHHHHH----CCCCEEEECC----CCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 36666643 45778888888888 5999987763 2222220 01233346788888888
Q ss_pred HhcCCcEEEeec-Cc-------ccHHHHhh-hcceecccCCccCCH-HHHHHHHhcCC-eEEEeCCCCCCHHHHHHHHHH
Q 022892 84 IAYDIPIVTDVH-ET-------VQCEEVGK-VADIIQIPAFLCRQT-DLLVAAAKTGK-IINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 84 ~~~Gi~~~s~~~-d~-------~~~~~l~~-~~d~~kIgs~~~~n~-~lL~~~a~~~~-PVilstG~~~tl~e~~~Ave~ 152 (290)
++..+|+.--.+ ++ .-++.+.+ .++.+-++--..... ++++.+-+.|+ ++.+=+... +.+.++..++.
T Consensus 73 ~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T-~~~~i~~i~~~ 151 (242)
T cd04724 73 KKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTT-PDERIKKIAEL 151 (242)
T ss_pred hcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHhh
Confidence 877888554222 42 23444444 577777743222232 56677777787 566566555 66666665431
Q ss_pred HHHcCCCcEEEEeecCCCCCCC-CCC-CchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 022892 153 VRLAGNPNVMVCERGTMFGYND-LIV-DPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 229 (290)
Q Consensus 153 i~~~Gn~~i~L~~~gs~~~y~~-~~~-dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aA 229 (290)
...-+.++-....++-.. ... -+..+..+|+ .++||.+|..=. . ..-+...
T Consensus 152 ----~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~-----------------~-----~e~~~~~ 205 (242)
T cd04724 152 ----ASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGIS-----------------T-----PEQAAEV 205 (242)
T ss_pred ----CCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCC-----------------C-----HHHHHHH
Confidence 222333322211112111 111 2255667777 689988752211 1 3334455
Q ss_pred HHcCCCEEEEeeeC
Q 022892 230 IAVGVDGVFMEVHD 243 (290)
Q Consensus 230 va~GA~G~~IEkH~ 243 (290)
... |||+++=+.+
T Consensus 206 ~~~-ADgvVvGSai 218 (242)
T cd04724 206 AKY-ADGVIVGSAL 218 (242)
T ss_pred Hcc-CCEEEECHHH
Confidence 666 9999998877
No 89
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.56 E-value=0.21 Score=42.60 Aligned_cols=121 Identities=11% Similarity=0.005 Sum_probs=71.1
Q ss_pred CeEEEEccCCccC----HHHHHHHHHHHHHHHHHcCCCEEeccc--cccCCCCCcccCCCCChhHHHHHHHHHHHh--cC
Q 022892 16 PFFLLAGPNVIES----EEHIMRMAKHIKSISTKVGLPLVFKSS--FDKANRTSSKSFRGPGMVEGLKILEKVKIA--YD 87 (290)
Q Consensus 16 ~~~iIAgpcsien----~~~~le~Ak~L~~~a~~~G~~~V~~~~--~~k~~rts~~~~~g~~~~~~l~~L~~~~~~--~G 87 (290)
++-+|++.+.- + .+...+.+++.++ +|++++.... |.. + + + ..+.-++++++++++ .+
T Consensus 48 ~~~v~~~v~~~-~~~~~~~~~~~~a~~a~~----~Gad~i~v~~~~~~~-~--~-----~-~~~~~~~~~~~i~~~~~~~ 113 (201)
T cd00945 48 DVPVIVVVGFP-TGLTTTEVKVAEVEEAID----LGADEIDVVINIGSL-K--E-----G-DWEEVLEEIAAVVEAADGG 113 (201)
T ss_pred CCeEEEEecCC-CCCCcHHHHHHHHHHHHH----cCCCEEEEeccHHHH-h--C-----C-CHHHHHHHHHHHHHHhcCC
Confidence 56778887762 2 4555555555554 6999987631 111 0 0 0 012335556666666 69
Q ss_pred CcEEEeec-----CcccHHHH----hh-hcceecccCCcc---CCHHHHHHHHh-c--CCeEEEeCCCCCCHHHHHHHHH
Q 022892 88 IPIVTDVH-----ETVQCEEV----GK-VADIIQIPAFLC---RQTDLLVAAAK-T--GKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 88 i~~~s~~~-----d~~~~~~l----~~-~~d~~kIgs~~~---~n~~lL~~~a~-~--~~PVilstG~~~tl~e~~~Ave 151 (290)
+|++-... +++.+..+ .+ .++++|..+... .+...++.+-+ . +.||....|.. +++.+..++.
T Consensus 114 ~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~-~~~~~~~~~~ 192 (201)
T cd00945 114 LPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIK-TLEDALAAIE 192 (201)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCC-CHHHHHHHHH
Confidence 99997554 44444433 23 599999988732 14444444322 2 55898888888 7777776654
No 90
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=95.55 E-value=1.1 Score=41.30 Aligned_cols=156 Identities=21% Similarity=0.231 Sum_probs=93.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHH---HHH-HHHHHHhcCCcEEEeecCcccHHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEG---LKI-LEKVKIAYDIPIVTDVHETVQCEEV 103 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~---l~~-L~~~~~~~Gi~~~s~~~d~~~~~~l 103 (290)
+.+..++.|+++.+ .||++|=-..-. .| |++ .....++. +.+ ++.+.+..++|+.-+-++++.++..
T Consensus 22 ~~~~~~~~a~~~~~----~GAdiIDvG~~s--t~--p~~-~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aa 92 (258)
T cd00423 22 SLDKALEHARRMVE----EGADIIDIGGES--TR--PGA-EPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAA 92 (258)
T ss_pred CHHHHHHHHHHHHH----CCCCEEEECCCc--CC--CCC-CcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHH
Confidence 67888899999887 599998766433 12 221 11111222 333 4444455599998899999988887
Q ss_pred hh-hccee-cccCCccCCHHHHHHHHhcCCeEEEeC--CCCC----------C----HHHHHHHHHHHHHcCC-CcEEEE
Q 022892 104 GK-VADII-QIPAFLCRQTDLLVAAAKTGKIINIKK--GQFC----------A----SSVMVNSAEKVRLAGN-PNVMVC 164 (290)
Q Consensus 104 ~~-~~d~~-kIgs~~~~n~~lL~~~a~~~~PVilst--G~~~----------t----l~e~~~Ave~i~~~Gn-~~i~L~ 164 (290)
.+ +.+++ -|.+.. .+..+++.+++.+.||++-. |... + ++.+...++.+.+.|- .+=+++
T Consensus 93 L~~g~~iINdis~~~-~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Iil 171 (258)
T cd00423 93 LKAGADIINDVSGGR-GDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIIL 171 (258)
T ss_pred HHhCCCEEEeCCCCC-CChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 66 56654 333332 22567777888999999865 2211 1 3455555667778882 233566
Q ss_pred eecCCCCCCCCCCC---chhHHHHHhc-CCCEEE
Q 022892 165 ERGTMFGYNDLIVD---PRNLEWMREA-NCPVVA 194 (290)
Q Consensus 165 ~~gs~~~y~~~~~d---L~~i~~lk~~-~~pV~~ 194 (290)
..|..|.- ...-| ++.+..++++ ++|+.+
T Consensus 172 DPg~g~~k-~~~~~~~~l~~i~~~~~~~g~Pil~ 204 (258)
T cd00423 172 DPGIGFGK-TEEHNLELLRRLDAFRELPGLPLLL 204 (258)
T ss_pred eCCCCccC-CHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 77775432 11123 3455555666 899754
No 91
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=95.51 E-value=0.93 Score=42.10 Aligned_cols=192 Identities=20% Similarity=0.215 Sum_probs=114.0
Q ss_pred chhhHHhhhcC-CCCeEEEEccC-------CccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhH
Q 022892 3 PSTALFNQLKA-AEPFFLLAGPN-------VIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVE 74 (290)
Q Consensus 3 ~~~~~~~~i~~-~~~~~iIAgpc-------sien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~ 74 (290)
|..+++..+.. .+++.||||.= .|...-...++|+...+ +||.++.-- |-+..| ..
T Consensus 33 ~~~~f~~aL~~~~~~~~vIAEiKraSPs~G~i~~~~d~~~~a~~y~~----~GA~aiSVl-------Te~~~F-----~G 96 (254)
T PF00218_consen 33 PPRSFKEALRQNEGRISVIAEIKRASPSKGDIREDFDPAEIAKAYEE----AGAAAISVL-------TEPKFF-----GG 96 (254)
T ss_dssp -TTHHHHHHHSHTSS-EEEEEE-SEETTTEESBSS-SHHHHHHHHHH----TT-SEEEEE---------SCCC-----HH
T ss_pred CCCCHHHHHhcCCCCCeEEEEeecCCCCCCccCccCCHHHHHHHHHh----cCCCEEEEE-------CCCCCC-----CC
Confidence 44566666665 67789999742 22122245677777666 699887532 222223 35
Q ss_pred HHHHHHHHHHhcCCcEEEe--ecCcccHHHHhh-hcceecccCCcc-CCH--HHHHHHHhcCCeEEEeCCCCCCHHHHHH
Q 022892 75 GLKILEKVKIAYDIPIVTD--VHETVQCEEVGK-VADIIQIPAFLC-RQT--DLLVAAAKTGKIINIKKGQFCASSVMVN 148 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~d~~kIgs~~~-~n~--~lL~~~a~~~~PVilstG~~~tl~e~~~ 148 (290)
.+..|.++++..++|++.- +.|+.++..... ..|.+-+=..-+ ... .|++.+..+|+-+++... +.+|++.
T Consensus 97 s~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh---~~~El~~ 173 (254)
T PF00218_consen 97 SLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVH---NEEELER 173 (254)
T ss_dssp HHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEES---SHHHHHH
T ss_pred CHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEEC---CHHHHHH
Confidence 6889999999999999994 557777776665 588755444444 333 677888899999999987 8999998
Q ss_pred HHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHH
Q 022892 149 SAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCI 225 (290)
Q Consensus 149 Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (290)
|++ .|..=|.+=.|. ..+..+|+.....|.. . ++ +.+ +-=++ .+ +.-
T Consensus 174 al~----~~a~iiGINnRd----L~tf~vd~~~~~~l~~~ip~~~-~~i-seSGI---------------~~-----~~d 223 (254)
T PF00218_consen 174 ALE----AGADIIGINNRD----LKTFEVDLNRTEELAPLIPKDV-IVI-SESGI---------------KT-----PED 223 (254)
T ss_dssp HHH----TT-SEEEEESBC----TTTCCBHTHHHHHHHCHSHTTS-EEE-EESS----------------SS-----HHH
T ss_pred HHH----cCCCEEEEeCcc----ccCcccChHHHHHHHhhCccce-eEE-eecCC---------------CC-----HHH
Confidence 864 455444454443 4456678777766654 1 22 333 11111 12 334
Q ss_pred HHHHHHcCCCEEEEeeeC
Q 022892 226 ARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 226 a~aAva~GA~G~~IEkH~ 243 (290)
+......|++|++|-..+
T Consensus 224 ~~~l~~~G~davLVGe~l 241 (254)
T PF00218_consen 224 ARRLARAGADAVLVGEAL 241 (254)
T ss_dssp HHHHCTTT-SEEEESHHH
T ss_pred HHHHHHCCCCEEEECHHH
Confidence 445567899999997765
No 92
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=95.48 E-value=2.1 Score=39.65 Aligned_cols=156 Identities=19% Similarity=0.175 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH----HHHHHHhcCCcEEEeecCcccHHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI----LEKVKIAYDIPIVTDVHETVQCEEV 103 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~----L~~~~~~~Gi~~~s~~~d~~~~~~l 103 (290)
+.++.++.|+++++ .||++|=-..-. |.|+ +....-++.++. ++.+.+..++|+.-+-++++.++..
T Consensus 22 ~~~~~~~~a~~~~~----~GAdiIDIG~~s----t~p~-~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~v~e~a 92 (257)
T cd00739 22 SLDKAVAHAEKMIA----EGADIIDIGGES----TRPG-ADPVSVEEELERVIPVLEALRGELDVLISVDTFRAEVARAA 92 (257)
T ss_pred CHHHHHHHHHHHHH----CCCCEEEECCCc----CCCC-CCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCHHHHHHH
Confidence 67889999999988 599998664322 1122 221111333333 3445555699999999999999987
Q ss_pred hh-hcceec-ccCCccCCHHHHHHHHhcCCeEEEeCC--CCCC----------HHH----HHHHHHHHHHcCCC-cEEEE
Q 022892 104 GK-VADIIQ-IPAFLCRQTDLLVAAAKTGKIINIKKG--QFCA----------SSV----MVNSAEKVRLAGNP-NVMVC 164 (290)
Q Consensus 104 ~~-~~d~~k-Igs~~~~n~~lL~~~a~~~~PVilstG--~~~t----------l~e----~~~Ave~i~~~Gn~-~i~L~ 164 (290)
.+ .++++= |.++.-. ..++..+++.+.||++-.- .-.+ +++ ....++.+...|-+ +=+++
T Consensus 93 l~~G~~iINdisg~~~~-~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~ 171 (257)
T cd00739 93 LEAGADIINDVSGGSDD-PAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIIL 171 (257)
T ss_pred HHhCCCEEEeCCCCCCC-hHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 66 577664 5555322 5677778889999999542 2111 223 33445566777743 33566
Q ss_pred eecCCCCCCCCCCC---chhHHHHHhcCCCEEE
Q 022892 165 ERGTMFGYNDLIVD---PRNLEWMREANCPVVA 194 (290)
Q Consensus 165 ~~gs~~~y~~~~~d---L~~i~~lk~~~~pV~~ 194 (290)
..|..|... ..-| |+.+..++++++|+.+
T Consensus 172 DPg~gf~ks-~~~~~~~l~~i~~l~~~~~pil~ 203 (257)
T cd00739 172 DPGIGFGKT-PEHNLELLRRLDELKQLGLPVLV 203 (257)
T ss_pred ecCCCcccC-HHHHHHHHHHHHHHHhCCCcEEE
Confidence 777543221 1112 4566666667889755
No 93
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=95.47 E-value=1.7 Score=41.32 Aligned_cols=134 Identities=15% Similarity=0.047 Sum_probs=77.4
Q ss_pred HHHHHHHhcCCcEEE-----eecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVT-----DVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s-----~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
+++++.+..+.||-. +++..+.++.+.+ .++++-++...- .++++++-..+.+|+... .+.++.+.+.+
T Consensus 53 ~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g~p--~~~i~~lk~~g~~v~~~v---~s~~~a~~a~~ 127 (307)
T TIGR03151 53 EIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAGNP--GKYIPRLKENGVKVIPVV---ASVALAKRMEK 127 (307)
T ss_pred HHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcCCCc--HHHHHHHHHcCCEEEEEc---CCHHHHHHHHH
Confidence 344444333444433 3344456665555 688887754432 357788877888888644 37887766543
Q ss_pred HHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHH
Q 022892 152 KVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAI 230 (290)
Q Consensus 152 ~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAv 230 (290)
.|-+- +++|..-.-++....-++..++.+++ .++||+....=. . ..-..++.
T Consensus 128 ----~GaD~-Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~-----------------~-----~~~~~~al 180 (307)
T TIGR03151 128 ----AGADA-VIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIA-----------------D-----GRGMAAAF 180 (307)
T ss_pred ----cCCCE-EEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCC-----------------C-----HHHHHHHH
Confidence 46544 44433211122212235677788877 789998742211 1 23345677
Q ss_pred HcCCCEEEEeeeC
Q 022892 231 AVGVDGVFMEVHD 243 (290)
Q Consensus 231 a~GA~G~~IEkH~ 243 (290)
++||+|+++=+-|
T Consensus 181 ~~GA~gV~iGt~f 193 (307)
T TIGR03151 181 ALGAEAVQMGTRF 193 (307)
T ss_pred HcCCCEeecchHH
Confidence 8999999987654
No 94
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=95.46 E-value=2 Score=41.13 Aligned_cols=236 Identities=19% Similarity=0.213 Sum_probs=113.0
Q ss_pred CchhhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHH
Q 022892 2 DPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEK 81 (290)
Q Consensus 2 ~~~~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~ 81 (290)
|-||.++ +..-.-| ++|+.... -+....++-.+|.+.+.++|.-.-. .+... .+.. .+.+..+..
T Consensus 41 d~s~~~~-G~~l~~P-i~ia~mtG--g~~~~~~in~~La~~a~~~g~~~~~-Gs~~~-------~~~~---~e~~~~~~~ 105 (326)
T cd02811 41 DLSTEFL-GKRLSAP-LLISAMTG--GSEKAKEINRNLAEAAEELGIAMGV-GSQRA-------ALED---PELAESFTV 105 (326)
T ss_pred CCeeEEC-CceecCC-EEEeCCCC--CChHHHHHHHHHHHHHHHcCCCeEe-cCchh-------hccC---hhhhhHHHH
Confidence 4445544 2223444 66665544 2344677789999999999953211 11100 0100 112223333
Q ss_pred HHHhcC-CcEEEeec-------CcccHHHHhh--hcceecccCCc---------cCCH----HHHHHHHh-cCCeEEEeC
Q 022892 82 VKIAYD-IPIVTDVH-------ETVQCEEVGK--VADIIQIPAFL---------CRQT----DLLVAAAK-TGKIINIKK 137 (290)
Q Consensus 82 ~~~~~G-i~~~s~~~-------d~~~~~~l~~--~~d~~kIgs~~---------~~n~----~lL~~~a~-~~~PVilst 137 (290)
+..... .|++...+ +++.+....+ ..|++.|.-.. -+++ +.|+.+.+ .+.||++|-
T Consensus 106 vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~ 185 (326)
T cd02811 106 VREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKE 185 (326)
T ss_pred HHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 333332 55444443 3333333322 25555553210 0233 44666554 489999995
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-CCC----CCC-----------CCCC---chhHHHHHh-c-CCCEEEe
Q 022892 138 -GQFCASSVMVNSAEKVRLAGNPNVMVCERGT-MFG----YND-----------LIVD---PRNLEWMRE-A-NCPVVAD 195 (290)
Q Consensus 138 -G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs-~~~----y~~-----------~~~d---L~~i~~lk~-~-~~pV~~D 195 (290)
|...+.+++.. +...|-+-|.+--+|. ++- +.. .+.- ...+...++ . ++||+.+
T Consensus 186 ~g~g~s~~~a~~----l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIias 261 (326)
T cd02811 186 VGFGISRETAKR----LADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIAS 261 (326)
T ss_pred cCCCCCHHHHHH----HHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEE
Confidence 55446555443 4556655444422222 110 000 0011 123334444 4 7898874
Q ss_pred CCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 022892 196 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVS 275 (290)
Q Consensus 196 ~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~l 275 (290)
. |.|.. ..+. .|+++||+++.+=+-|- +++-++ ..--.+.++.+.++++.+-...
T Consensus 262 G--------------------GIr~~-~dv~-kal~lGAd~V~i~~~~L--~~~~~g-~~~~~~~i~~~~~el~~~m~~~ 316 (326)
T cd02811 262 G--------------------GIRNG-LDIA-KALALGADLVGMAGPFL--KAALEG-EEAVIETIEQIIEELRTAMFLT 316 (326)
T ss_pred C--------------------CCCCH-HHHH-HHHHhCCCEEEEcHHHH--HHHhcC-HHHHHHHHHHHHHHHHHHHHHh
Confidence 2 22211 3333 56889999888876431 001111 0001236777888888888888
Q ss_pred CCcccc
Q 022892 276 KGKQRM 281 (290)
Q Consensus 276 g~~~~~ 281 (290)
|.+++-
T Consensus 317 G~~si~ 322 (326)
T cd02811 317 GAKNLA 322 (326)
T ss_pred CCCCHH
Confidence 876653
No 95
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=95.43 E-value=0.62 Score=43.39 Aligned_cols=183 Identities=17% Similarity=0.187 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccc---cccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee----------
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSS---FDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV---------- 94 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~---~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~---------- 94 (290)
+.++.+++|+.|.++ |++.+=... |.. ...|.+..-.+-++.+.+...+..+..++..
T Consensus 19 ~~~~~~~ia~~L~~~----Gv~~iE~G~~a~~~~-----~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p 89 (275)
T cd07937 19 RTEDMLPIAEALDEA----GFFSLEVWGGATFDV-----CMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYP 89 (275)
T ss_pred cHHHHHHHHHHHHHc----CCCEEEccCCcchhh-----hccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCC
Confidence 567788888888884 988875432 111 0111111112334444444333333333321
Q ss_pred c--CcccHHHHhh-hcceecccCCccCCHH----HHHHHHhcCCeEE--EeC--CCCCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 95 H--ETVQCEEVGK-VADIIQIPAFLCRQTD----LLVAAAKTGKIIN--IKK--GQFCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 95 ~--d~~~~~~l~~-~~d~~kIgs~~~~n~~----lL~~~a~~~~PVi--lst--G~~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
. .+..++...+ .++++-|.- -+++.+ .++.+-+.|+-|. ++. +...+++.+.+.++.+.+.|-..|.|
T Consensus 90 ~~~~~~di~~~~~~g~~~iri~~-~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l 168 (275)
T cd07937 90 DDVVELFVEKAAKNGIDIFRIFD-ALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICI 168 (275)
T ss_pred cHHHHHHHHHHHHcCCCEEEEee-cCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 1 2334445445 478877743 333343 3344445676654 332 22338999999999999999888888
Q ss_pred EeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 164 CERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 164 ~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
+...+.. .|. ++- .-+..+++ +++|+++ +.|-+ .| +...-+.+|+.+||+ .|+.-
T Consensus 169 ~DT~G~~-~P~-~v~-~lv~~l~~~~~~~l~~-H~Hnd---------------~G---lA~aN~laA~~aGa~--~vd~s 224 (275)
T cd07937 169 KDMAGLL-TPY-AAY-ELVKALKKEVGLPIHL-HTHDT---------------SG---LAVATYLAAAEAGVD--IVDTA 224 (275)
T ss_pred cCCCCCC-CHH-HHH-HHHHHHHHhCCCeEEE-EecCC---------------CC---hHHHHHHHHHHhCCC--EEEEe
Confidence 8766531 222 121 45566777 7789999 88864 12 234556788999998 77765
Q ss_pred CC
Q 022892 243 DD 244 (290)
Q Consensus 243 ~t 244 (290)
+.
T Consensus 225 v~ 226 (275)
T cd07937 225 IS 226 (275)
T ss_pred cc
Confidence 53
No 96
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.36 E-value=1 Score=41.01 Aligned_cols=171 Identities=9% Similarity=-0.026 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcce
Q 022892 33 MRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VADI 109 (290)
Q Consensus 33 le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d~ 109 (290)
.++|+...+. .|++-+...-.+.+ ..+. ...+..+++.+++.++|+.. =+.+.++++.+-+ .++.
T Consensus 34 ~~~a~~~~~~---~Ga~~l~ivDLd~a-------~~~~--~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~k 101 (234)
T PRK13587 34 EESIAYYSQF---ECVNRIHIVDLIGA-------KAQH--AREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINY 101 (234)
T ss_pred HHHHHHHHhc---cCCCEEEEEECccc-------ccCC--cchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCE
Confidence 5677776652 48887766555421 0111 24578888999999999877 6788888887776 6999
Q ss_pred ecccCCccCCHHHHHHHHhc-CCeEEEeC----C----------CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC
Q 022892 110 IQIPAFLCRQTDLLVAAAKT-GKIINIKK----G----------QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 110 ~kIgs~~~~n~~lL~~~a~~-~~PVilst----G----------~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~ 174 (290)
+-||+...+|.++++++++. +--|+++= | +..++.|+ ++.+...|-..+++..-.. -+. .
T Consensus 102 vvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~---~~~~~~~g~~~ii~tdi~~-dGt-~ 176 (234)
T PRK13587 102 CIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSF---VRQLSDIPLGGIIYTDIAK-DGK-M 176 (234)
T ss_pred EEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHH---HHHHHHcCCCEEEEecccC-cCC-C
Confidence 99999999999999998754 22255442 2 11233443 3445555655655554321 111 0
Q ss_pred CCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 175 LIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 175 ~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
.-.|+..+..+.+ .++||++ +- |.+. ..-...+..+|++|+++=+-
T Consensus 177 ~G~~~~li~~l~~~~~ipvi~-~G-------------------Gi~s--~edi~~l~~~G~~~vivG~a 223 (234)
T PRK13587 177 SGPNFELTGQLVKATTIPVIA-SG-------------------GIRH--QQDIQRLASLNVHAAIIGKA 223 (234)
T ss_pred CccCHHHHHHHHHhCCCCEEE-eC-------------------CCCC--HHHHHHHHHcCCCEEEEhHH
Confidence 1246777788877 7899988 21 2111 22223345789999988653
No 97
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.35 E-value=2 Score=38.71 Aligned_cols=175 Identities=16% Similarity=0.164 Sum_probs=114.1
Q ss_pred hHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh
Q 022892 6 ALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA 85 (290)
Q Consensus 6 ~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~ 85 (290)
.++..+. ..+++.|.-. ++.+..+..++.|.+ .|+.++-.. |+. ..+++.+++++++
T Consensus 5 ~~~~~l~-~~~vi~vir~---~~~~~a~~~~~al~~----~Gi~~iEit------------~~~---~~a~~~i~~l~~~ 61 (213)
T PRK06552 5 EILTKLK-ANGVVAVVRG---ESKEEALKISLAVIK----GGIKAIEVT------------YTN---PFASEVIKELVEL 61 (213)
T ss_pred HHHHHHH-HCCEEEEEEC---CCHHHHHHHHHHHHH----CCCCEEEEE------------CCC---ccHHHHHHHHHHH
Confidence 3445553 3444444322 256777888888877 588876442 221 3466777777777
Q ss_pred cC----CcEEE-eecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCC
Q 022892 86 YD----IPIVT-DVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 86 ~G----i~~~s-~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~ 159 (290)
++ +.+-+ |++++++++...+ ..+|+-=+ ..|.++++++-+.+.|++- |.. |++|+..|.+ .|-+
T Consensus 62 ~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP---~~~~~v~~~~~~~~i~~iP--G~~-T~~E~~~A~~----~Gad 131 (213)
T PRK06552 62 YKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSP---SFNRETAKICNLYQIPYLP--GCM-TVTEIVTALE----AGSE 131 (213)
T ss_pred cCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECC---CCCHHHHHHHHHcCCCEEC--CcC-CHHHHHHHHH----cCCC
Confidence 73 55554 9999999998877 68877744 4688999999899999886 777 9999999864 5766
Q ss_pred cEEEEeecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 160 NVMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 160 ~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
-+-+ || ...+-+..+..++. + ++|++- +=++ + ..-...-.++|++|+
T Consensus 132 ~vkl------FP--a~~~G~~~ik~l~~~~p~ip~~a--tGGI----------------~-----~~N~~~~l~aGa~~v 180 (213)
T PRK06552 132 IVKL------FP--GSTLGPSFIKAIKGPLPQVNVMV--TGGV----------------N-----LDNVKDWFAAGADAV 180 (213)
T ss_pred EEEE------CC--cccCCHHHHHHHhhhCCCCEEEE--ECCC----------------C-----HHHHHHHHHCCCcEE
Confidence 5554 33 32244566777777 5 477653 2221 1 223445578899988
Q ss_pred EEeeeCC
Q 022892 238 FMEVHDD 244 (290)
Q Consensus 238 ~IEkH~t 244 (290)
.+=+-+.
T Consensus 181 avgs~l~ 187 (213)
T PRK06552 181 GIGGELN 187 (213)
T ss_pred EEchHHh
Confidence 7776664
No 98
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.33 E-value=0.23 Score=45.59 Aligned_cols=135 Identities=12% Similarity=0.131 Sum_probs=82.7
Q ss_pred HHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCC
Q 022892 81 KVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 81 ~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~ 159 (290)
+..++-+..++.++||.-++..+++ ..+.+.+++..+.. ..|.| .++.. +++|+...+.-|...
T Consensus 3 ~l~~~~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~--------s~G~p---D~~~~-~~~e~~~~~~~I~~~--- 67 (243)
T cd00377 3 ALLESGGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAA--------SLGLP---DGGLL-TLDEVLAAVRRIARA--- 67 (243)
T ss_pred hHHhCCCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHH--------hcCCC---CCCcC-CHHHHHHHHHHHHhh---
Confidence 3334445666667777777777766 47777776654432 11333 23333 666666666554321
Q ss_pred cEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 160 NVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 160 ~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
..+||+.|-+.+- |..+.+....+..+..|++|+.|
T Consensus 68 ----------------------------~~~Pv~~D~~~G~----------------g~~~~~~~~v~~~~~~G~~gv~i 103 (243)
T cd00377 68 ----------------------------VDLPVIADADTGY----------------GNALNVARTVRELEEAGAAGIHI 103 (243)
T ss_pred ----------------------------ccCCEEEEcCCCC----------------CCHHHHHHHHHHHHHcCCEEEEE
Confidence 2478888877652 22222333444556789999999
Q ss_pred eeeCCCCCCC-CCCCCCCChHHHHHHHHHHHHHHHH
Q 022892 240 EVHDDPLNAP-VDGPTQWPLRNLEELLEELVAIAKV 274 (290)
Q Consensus 240 EkH~t~dka~-~D~~~sl~p~~l~~lv~~ir~~~~~ 274 (290)
|-...|.+.- ...+..++++|+.+.++.+++....
T Consensus 104 ED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~ 139 (243)
T cd00377 104 EDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDD 139 (243)
T ss_pred ecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhc
Confidence 9886665543 3667778888888888877776554
No 99
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=95.18 E-value=0.33 Score=46.03 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=78.5
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
.|+++.++-+..++-.+||.-++..+++ ..+.+.++|..+. ++.+|+| ..|.- +++|+...+..|
T Consensus 7 ~~r~l~~~~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~-------as~lG~p---D~g~l-~~~e~~~~~~~I--- 72 (294)
T TIGR02319 7 TFRELMNAPEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTS-------ASMLGLP---DLGFT-SVSEQAINAKNI--- 72 (294)
T ss_pred HHHHHhcCCCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHH-------HHHcCCC---CcCCC-CHHHHHHHHHHH---
Confidence 4555555566667778888777776665 4555554332211 2234555 22333 555555544433
Q ss_pred CCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCC
Q 022892 157 GNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 235 (290)
Q Consensus 157 Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~ 235 (290)
.+ .++||++|.+.+- |...-+....+.-..+||.
T Consensus 73 -----------------------------~~~~~lPv~aD~dtGy----------------G~~~~v~r~V~~~~~aGaa 107 (294)
T TIGR02319 73 -----------------------------VLAVDVPVIMDADAGY----------------GNAMSVWRATREFERVGIV 107 (294)
T ss_pred -----------------------------HhccCCCEEEECCCCC----------------CCcHHHHHHHHHHHHcCCe
Confidence 22 4689999999874 2222233445566789999
Q ss_pred EEEEeeeCCCCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhC
Q 022892 236 GVFMEVHDDPLNAP-VDGPTQWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 236 G~~IEkH~t~dka~-~D~~~sl~p~~l~~lv~~ir~~~~~lg 276 (290)
|+.||-...|.|.- .+++.-++++ ++++.|+.+..+..
T Consensus 108 gi~IEDq~~pK~cg~~~~k~lv~~e---e~~~kI~Aa~~A~~ 146 (294)
T TIGR02319 108 GYHLEDQVNPKRCGHLEGKRLISTE---EMTGKIEAAVEARE 146 (294)
T ss_pred EEEEECCCCccccCCCCCccccCHH---HHHHHHHHHHHhcc
Confidence 99999886654432 1333334444 56666666655543
No 100
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=95.18 E-value=2.2 Score=38.04 Aligned_cols=192 Identities=14% Similarity=0.070 Sum_probs=103.1
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCC-CEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGL-PLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV 94 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~-~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~ 94 (290)
.+++.|+.|.+- ..+.++.+.+ .|. ..+ . +| + ...+.-.+.++++.+..+.++..-+
T Consensus 3 ~pi~~a~m~g~~----~~~~~~~~~~----~G~ig~i-----~--~~-----~--~~~~~~~~~~~~i~~~~~~~~~v~~ 60 (236)
T cd04730 3 YPIIQAPMAGVS----TPELAAAVSN----AGGLGFI-----G--AG-----Y--LTPEALRAEIRKIRALTDKPFGVNL 60 (236)
T ss_pred CCEECCCCCCCC----CHHHHHHHHh----CCCcccc-----C--CC-----C--CCHHHHHHHHHHHHHhcCCCeEEeE
Confidence 357888899863 3455555555 453 222 1 11 0 1112223444445444444544433
Q ss_pred cCcc-------cHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEee
Q 022892 95 HETV-------QCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCER 166 (290)
Q Consensus 95 ~d~~-------~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~ 166 (290)
+-.. .++.+.+ .+|.+.++.. ....+++++.+.+.|++.+.. +.+++..+.+ .|- ..++++.
T Consensus 61 i~~~~~~~~~~~~~~~~~~g~d~v~l~~~--~~~~~~~~~~~~~i~~i~~v~---~~~~~~~~~~----~ga-d~i~~~~ 130 (236)
T cd04730 61 LVPSSNPDFEALLEVALEEGVPVVSFSFG--PPAEVVERLKAAGIKVIPTVT---SVEEARKAEA----AGA-DALVAQG 130 (236)
T ss_pred ecCCCCcCHHHHHHHHHhCCCCEEEEcCC--CCHHHHHHHHHcCCEEEEeCC---CHHHHHHHHH----cCC-CEEEEeC
Confidence 3222 3455545 5899999877 456778888888999988743 5666655433 454 4455544
Q ss_pred cCCCCC--CCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 167 GTMFGY--NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 167 gs~~~y--~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
...-++ +.....+..+..+++ +++||+... |... +.-...+...||+|+++=+-+
T Consensus 131 ~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~G--------------------GI~~--~~~v~~~l~~GadgV~vgS~l 188 (236)
T cd04730 131 AEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAG--------------------GIAD--GRGIAAALALGADGVQMGTRF 188 (236)
T ss_pred cCCCCCCCccccCHHHHHHHHHHHhCCCEEEEC--------------------CCCC--HHHHHHHHHcCCcEEEEchhh
Confidence 221111 111124566777777 789998731 2111 233445567899999987665
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHH
Q 022892 244 DPLNAPVDGPTQWPLRNLEELLEE 267 (290)
Q Consensus 244 t~dka~~D~~~sl~p~~l~~lv~~ 267 (290)
.- +..+-...+.++++.+
T Consensus 189 ~~------~~e~~~~~~~~~~~~~ 206 (236)
T cd04730 189 LA------TEESGASPAYKQALLA 206 (236)
T ss_pred hc------CcccCCCHHHHHHHHc
Confidence 32 2233334455555543
No 101
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.16 E-value=0.21 Score=44.62 Aligned_cols=100 Identities=15% Similarity=-0.010 Sum_probs=69.1
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEEeecCcccHHHHhh-hcceecccCC---
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVTDVHETVQCEEVGK-VADIIQIPAF--- 115 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~--- 115 (290)
+.+.++|+++|...... ..++. .+.+.++.+.+++ .|++++.++.+.+.+..+.+ .+|++.+..+
T Consensus 82 ~~a~~aGad~I~~d~~~---~~~p~-------~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t 151 (221)
T PRK01130 82 DALAAAGADIIALDATL---RPRPD-------GETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYT 151 (221)
T ss_pred HHHHHcCCCEEEEeCCC---CCCCC-------CCCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceee
Confidence 34445799877654211 00110 1345667777777 89999999999988887777 6999987533
Q ss_pred ------ccCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 116 ------LCRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 116 ------~~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
.-.+..+++++.+ .++||+..-|.. +.+++..+.+
T Consensus 152 ~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~-t~~~~~~~l~ 193 (221)
T PRK01130 152 EETKKPEEPDFALLKELLKAVGCPVIAEGRIN-TPEQAKKALE 193 (221)
T ss_pred cCCCCCCCcCHHHHHHHHHhCCCCEEEECCCC-CHHHHHHHHH
Confidence 2245677777755 489999999988 8998887644
No 102
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=95.15 E-value=0.1 Score=49.42 Aligned_cols=110 Identities=21% Similarity=0.192 Sum_probs=66.7
Q ss_pred cccCCccCCHHHHHHH----H-hcCCeEEEeCCCCC--CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHH
Q 022892 111 QIPAFLCRQTDLLVAA----A-KTGKIINIKKGQFC--ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLE 183 (290)
Q Consensus 111 kIgs~~~~n~~lL~~~----a-~~~~PVilstG~~~--tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~ 183 (290)
.-||..+.|.+++..+ . .++.||=+|.=... +.++..+-+..+...|-..|++--|+-.-.|.. .+|...+.
T Consensus 98 g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~-~a~w~~i~ 176 (309)
T PF01207_consen 98 GAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKG-PADWEAIA 176 (309)
T ss_dssp T-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS----HHHHH
T ss_pred CcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCc-ccchHHHH
Confidence 4688899999866543 2 46889988876554 478889999999999965555544433334543 57999999
Q ss_pred HHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHH-cCCCEEEEeeeC
Q 022892 184 WMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIA-VGVDGVFMEVHD 243 (290)
Q Consensus 184 ~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva-~GA~G~~IEkH~ 243 (290)
.+++ ..+||+++.+=. . ..-+..... .|++|+||=.-.
T Consensus 177 ~i~~~~~ipvi~NGdI~-----------------s-----~~d~~~~~~~tg~dgvMigRga 216 (309)
T PF01207_consen 177 EIKEALPIPVIANGDIF-----------------S-----PEDAERMLEQTGADGVMIGRGA 216 (309)
T ss_dssp HCHHC-TSEEEEESS-------------------S-----HHHHHHHCCCH-SSEEEESHHH
T ss_pred HHhhcccceeEEcCccC-----------------C-----HHHHHHHHHhcCCcEEEEchhh
Confidence 9998 889999865432 1 222333232 499999997654
No 103
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.11 E-value=0.47 Score=46.91 Aligned_cols=118 Identities=12% Similarity=0.169 Sum_probs=83.3
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s 92 (290)
.+++.+.|..+. +.+ .++.++.|++ +|+|+|...+-. +.+ ...++.++++.+++ +++++.
T Consensus 139 ~~~l~v~aavg~--~~~-~~~~v~~lv~----aGvDvI~iD~a~-----------g~~-~~~~~~v~~ik~~~p~~~vi~ 199 (404)
T PRK06843 139 NNKLRVGAAVSI--DID-TIERVEELVK----AHVDILVIDSAH-----------GHS-TRIIELVKKIKTKYPNLDLIA 199 (404)
T ss_pred hcCeEEEEEEeC--CHH-HHHHHHHHHh----cCCCEEEEECCC-----------CCC-hhHHHHHHHHHhhCCCCcEEE
Confidence 567888888775 443 7889999988 599998865322 112 34455666666676 677744
Q ss_pred -eecCcccHHHHhh-hcceecccCC--------cc-----CCHHHH---HHHH-hcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 93 -DVHETVQCEEVGK-VADIIQIPAF--------LC-----RQTDLL---VAAA-KTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 93 -~~~d~~~~~~l~~-~~d~~kIgs~--------~~-----~n~~lL---~~~a-~~~~PVilstG~~~tl~e~~~Ave 151 (290)
.+-..+.+..+.+ .+|++++|-. .. -++..+ ..++ +.+.|||..=|.. +..++..|+.
T Consensus 200 g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~-~~~Di~KALa 276 (404)
T PRK06843 200 GNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIR-FSGDVVKAIA 276 (404)
T ss_pred EecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCC-CHHHHHHHHH
Confidence 9999999999988 7999998721 11 133333 3333 4689999999999 9999998865
No 104
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=95.10 E-value=0.32 Score=46.38 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=69.4
Q ss_pred ccCCccCCHHHHHHHH-----hcCCeEEEeCCC--CCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCCCchhHH
Q 022892 112 IPAFLCRQTDLLVAAA-----KTGKIINIKKGQ--FCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNLE 183 (290)
Q Consensus 112 Igs~~~~n~~lL~~~a-----~~~~PVilstG~--~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~~~~dL~~i~ 183 (290)
.||..+.|.+++.++. ..+.||.+|... ..+..++...++.+.+.|-.-| .+|..+.. .|. ...|+..+.
T Consensus 110 ~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i-~vh~rt~~~~~~-G~a~~~~i~ 187 (321)
T PRK10415 110 AGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQAL-TIHGRTRACLFN-GEAEYDSIR 187 (321)
T ss_pred cccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEE-EEecCccccccC-CCcChHHHH
Confidence 4777889998876643 346799988743 3233466677777777776544 55655431 232 235778888
Q ss_pred HHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHH-cCCCEEEEeeeC
Q 022892 184 WMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIA-VGVDGVFMEVHD 243 (290)
Q Consensus 184 ~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva-~GA~G~~IEkH~ 243 (290)
.+++ .++||+...+=. . +.-+..++. .||||+||=+-.
T Consensus 188 ~ik~~~~iPVI~nGgI~-----------------s-----~~da~~~l~~~gadgVmiGR~~ 227 (321)
T PRK10415 188 AVKQKVSIPVIANGDIT-----------------D-----PLKARAVLDYTGADALMIGRAA 227 (321)
T ss_pred HHHHhcCCcEEEeCCCC-----------------C-----HHHHHHHHhccCCCEEEEChHh
Confidence 8888 899998743321 1 334445554 699999998644
No 105
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.07 E-value=1.2 Score=42.60 Aligned_cols=138 Identities=17% Similarity=0.111 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhcCCcEEEee--cCcccHHHHhh-hcceecccCCccC---CHHHHHHHHhcC--CeEEEeCCCCCCHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDV--HETVQCEEVGK-VADIIQIPAFLCR---QTDLLVAAAKTG--KIINIKKGQFCASSV 145 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~--~d~~~~~~l~~-~~d~~kIgs~~~~---n~~lL~~~a~~~--~PVilstG~~~tl~e 145 (290)
+..++++++...+++.....+ .+.+.++.+.+ .++++-|-...-. ..++++++-+.. .||+. |.-.|.++
T Consensus 71 ~~~~~i~~vk~~l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~--G~v~t~~~ 148 (325)
T cd00381 71 EQAEEVRKVKGRLLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA--GNVVTAEA 148 (325)
T ss_pred HHHHHHHHhccCceEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE--CCCCCHHH
Confidence 334455555444444333322 22334444444 5777766443222 245666665544 78888 44446777
Q ss_pred HHHHHHHHHHcCCCcEEEE-----eecCCCCCCCCCCCchhHHHHHh----cCCCEEEeCCCCCCCCCCCccCCCCccCC
Q 022892 146 MVNSAEKVRLAGNPNVMVC-----ERGTMFGYNDLIVDPRNLEWMRE----ANCPVVADVTHSLQQPAGKKLDGGGVASG 216 (290)
Q Consensus 146 ~~~Ave~i~~~Gn~~i~L~-----~~gs~~~y~~~~~dL~~i~~lk~----~~~pV~~D~sHs~~~~~~~~~~~~~~~~~ 216 (290)
.+.+.+ .|-+-|.+. +|.+......-.-++..+..+.+ .++||+.|..=.
T Consensus 149 A~~l~~----aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~----------------- 207 (325)
T cd00381 149 ARDLID----AGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIR----------------- 207 (325)
T ss_pred HHHHHh----cCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCC-----------------
Confidence 776644 566544441 12221000001123445555433 479997642211
Q ss_pred CCcccHHHHHHHHHHcCCCEEEE
Q 022892 217 GLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 217 g~~~~~~~~a~aAva~GA~G~~I 239 (290)
. ..-...|.++||+|+|+
T Consensus 208 ~-----~~di~kAla~GA~~Vmi 225 (325)
T cd00381 208 T-----SGDIVKALAAGADAVML 225 (325)
T ss_pred C-----HHHHHHHHHcCCCEEEe
Confidence 1 22234568899999999
No 106
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=95.06 E-value=2 Score=39.13 Aligned_cols=164 Identities=15% Similarity=0.224 Sum_probs=99.0
Q ss_pred HHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCcc
Q 022892 38 HIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLC 117 (290)
Q Consensus 38 ~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~ 117 (290)
++.+.+.+.|.|+++-..-.- .. ..+++-+..++++.+ .+|++-+|-++.++ ...+|.+-++|=.-
T Consensus 16 ~~~~~~~~~gtdai~vGGS~~-----v~----~~~~~~~~~ik~~~~--~~Pvilfp~~~~~i---~~~aDa~l~~svln 81 (219)
T cd02812 16 EIAKLAEESGTDAIMVGGSDG-----VS----STLDNVVRLIKRIRR--PVPVILFPSNPEAV---SPGADAYLFPSVLN 81 (219)
T ss_pred HHHHHHHhcCCCEEEECCccc-----hh----hhHHHHHHHHHHhcC--CCCEEEeCCCcccc---CcCCCEEEEEeeec
Confidence 355666668999998753220 00 012344556666554 79999999999877 45788888887443
Q ss_pred -CCHHHH-----HHHHhcCC--------e---EEEeCCC----------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCC
Q 022892 118 -RQTDLL-----VAAAKTGK--------I---INIKKGQ----------FCASSVMVNSAEKVRLAGNPNVMVCERGTMF 170 (290)
Q Consensus 118 -~n~~lL-----~~~a~~~~--------P---VilstG~----------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~ 170 (290)
+|...+ +.+...++ | +++--|. ..+++++..-+..-..-| -+++=++ +|.
T Consensus 82 s~n~~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~ayA~aae~~g-~~ivyLe-~SG- 158 (219)
T cd02812 82 SGDPYWIIGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYALAAEYLG-MPIVYLE-YSG- 158 (219)
T ss_pred CCCchHHHHHHHHHHHHhccccccccccceEEEEECCCCceeeeeccCcCCCHHHHHHHHHHHHHcC-CeEEEeC-CCC-
Confidence 344332 22322222 1 2222221 135666665555445556 6777777 442
Q ss_pred CCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 171 GYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 171 ~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.+ .|...+..+++ . ++||.+. +|.|. +..+..+..+|||++++=+-+.
T Consensus 159 ~~----~~~e~I~~v~~~~~~~pl~vG--------------------GGIrs--~e~a~~l~~aGAD~VVVGsai~ 208 (219)
T cd02812 159 AY----GPPEVVRAVKKVLGDTPLIVG--------------------GGIRS--GEQAKEMAEAGADTIVVGNIVE 208 (219)
T ss_pred Cc----CCHHHHHHHHHhcCCCCEEEe--------------------CCCCC--HHHHHHHHHcCCCEEEECchhh
Confidence 12 67888999988 7 8998771 12111 4566777788999999877763
No 107
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=95.00 E-value=1.5 Score=42.06 Aligned_cols=237 Identities=19% Similarity=0.260 Sum_probs=117.7
Q ss_pred CchhhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHH
Q 022892 2 DPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEK 81 (290)
Q Consensus 2 ~~~~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~ 81 (290)
|-||.+|. ..-..| ++|+.... ..+...++-+.|.+.++++|...-.-. ... .+......+.+..+++
T Consensus 42 d~s~~~~g-~~l~~P-i~iaaMtG--g~~~~~~in~~La~~a~~~g~~~~~Gs-~~~-------~~~~~~~~~~~~~vr~ 109 (333)
T TIGR02151 42 DLTTEFLG-KRLKAP-FYINAMTG--GSEEAGKINRNLARAARELGIPMGVGS-QRA-------ALKDPETADTFEVVRE 109 (333)
T ss_pred CCceEECC-ccccCC-EEEeCCCC--CchhHHHHHHHHHHHHHHcCCCeEEcC-chh-------hccChhhHhHHHHHHH
Confidence 44555552 123455 55554443 335567888999999999997543221 110 0111111122333333
Q ss_pred HHHhcCCcEEEeecCc-------ccHHHHhh--hcceecccCCcc---------CCH----HHHHHHHh-cCCeEEEeC-
Q 022892 82 VKIAYDIPIVTDVHET-------VQCEEVGK--VADIIQIPAFLC---------RQT----DLLVAAAK-TGKIINIKK- 137 (290)
Q Consensus 82 ~~~~~Gi~~~s~~~d~-------~~~~~l~~--~~d~~kIgs~~~---------~n~----~lL~~~a~-~~~PVilst- 137 (290)
. ..++|++...+=+ +.+....+ ..+++.|.=... +++ +.++.+.+ .+.||++|-
T Consensus 110 ~--~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~ 187 (333)
T TIGR02151 110 E--APNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEV 187 (333)
T ss_pred h--CCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 2 4688888866421 11222222 245555432100 233 45666544 489999994
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-CCC----C-------CCCCC--c---hhHHHHHh--cCCCEEEeCCC
Q 022892 138 GQFCASSVMVNSAEKVRLAGNPNVMVCERGTM-FGY----N-------DLIVD--P---RNLEWMRE--ANCPVVADVTH 198 (290)
Q Consensus 138 G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~-~~y----~-------~~~~d--L---~~i~~lk~--~~~pV~~D~sH 198 (290)
|...+. +.+..+...|-+-|.+--+|.. +-. . ....| + ..+...++ .++||+.+.
T Consensus 188 g~g~~~----~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasG-- 261 (333)
T TIGR02151 188 GFGISK----EVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASG-- 261 (333)
T ss_pred CCCCCH----HHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEEC--
Confidence 443333 3344566678765665444321 100 0 00011 1 12222333 357887631
Q ss_pred CCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChH----HHHHHHHHHHHHHHH
Q 022892 199 SLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLR----NLEELLEELVAIAKV 274 (290)
Q Consensus 199 s~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~----~l~~lv~~ir~~~~~ 274 (290)
|.+. ..-+..++++||+++.+=.-+- ++.. .-.++ .++.+.+++|.+-..
T Consensus 262 ------------------GI~~--~~di~kaLalGAd~V~igr~~L--~~~~----~~g~~~v~~~i~~~~~eL~~~m~~ 315 (333)
T TIGR02151 262 ------------------GLRT--GLDVAKAIALGADAVGMARPFL--KAAL----DEGEEAVIEEIELIIEELKVAMFL 315 (333)
T ss_pred ------------------CCCC--HHHHHHHHHhCCCeehhhHHHH--HHHH----hcCHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 2234456889999877744321 0000 12344 677788888888888
Q ss_pred hCCccccccC
Q 022892 275 SKGKQRMNID 284 (290)
Q Consensus 275 lg~~~~~~~~ 284 (290)
.|.+.+-++.
T Consensus 316 ~G~~~i~el~ 325 (333)
T TIGR02151 316 TGAKTIAELK 325 (333)
T ss_pred hCCCCHHHHc
Confidence 8886665543
No 108
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=94.92 E-value=3 Score=38.19 Aligned_cols=213 Identities=18% Similarity=0.195 Sum_probs=129.4
Q ss_pred hHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh
Q 022892 6 ALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA 85 (290)
Q Consensus 6 ~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~ 85 (290)
.|.+.+....-+-||.|..-- |. +.-.+++++|...|++.|--.. .-+..+....-
T Consensus 4 ~l~~~~~~~~alKVIsGLnNF-d~----~~V~~i~~AA~~ggAt~vDIAa-------------------dp~LV~~~~~~ 59 (242)
T PF04481_consen 4 KLQQAFAQRRALKVISGLNNF-DA----ESVAAIVKAAEIGGATFVDIAA-------------------DPELVKLAKSL 59 (242)
T ss_pred HHHHHHHhCcchhheeCcccc-CH----HHHHHHHHHHHccCCceEEecC-------------------CHHHHHHHHHh
Confidence 455566555667799998842 33 4445666777788888764321 11223344477
Q ss_pred cCCcEEEeecCcccHHHHhh-hcceecccCCcc--------CCHHHHHHHHhc-----CCeEEEeCCCCCCHHHHHHHHH
Q 022892 86 YDIPIVTDVHETVQCEEVGK-VADIIQIPAFLC--------RQTDLLVAAAKT-----GKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 86 ~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~--------~n~~lL~~~a~~-----~~PVilstG~~~tl~e~~~Ave 151 (290)
.+||+..+--+|+......+ .+|++-||-+|. ..-+.|...-++ ..|+=+--.--..+++=.+-++
T Consensus 60 s~lPICVSaVep~~f~~aV~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~ 139 (242)
T PF04481_consen 60 SNLPICVSAVEPELFVAAVKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAE 139 (242)
T ss_pred CCCCeEeecCCHHHHHHHHHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHH
Confidence 89999999999988776655 799999999988 222333332222 2344443343445666666666
Q ss_pred HHHHcCCCcEEEEeecCC-CCCCCCCCC--chhHHHHHh-------cCCCEEEeCCCCCCCCCCCccCCCCccCCCCccc
Q 022892 152 KVRLAGNPNVMVCERGTM-FGYNDLIVD--PRNLEWMRE-------ANCPVVADVTHSLQQPAGKKLDGGGVASGGLREL 221 (290)
Q Consensus 152 ~i~~~Gn~~i~L~~~gs~-~~y~~~~~d--L~~i~~lk~-------~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~ 221 (290)
.+...|- +++=.|-|++ .++..-.+. -.+.++|.. ..+||+. +| ++ -
T Consensus 140 ~L~~~Ga-DiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlc-AS-Gl----------------S---- 196 (242)
T PF04481_consen 140 DLVKAGA-DIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLC-AS-GL----------------S---- 196 (242)
T ss_pred HHHHhCC-cEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEe-cc-Cc----------------c----
Confidence 6777775 6777887775 333332222 244555532 4689976 22 21 0
Q ss_pred HHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCc
Q 022892 222 IPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGK 278 (290)
Q Consensus 222 ~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~~ 278 (290)
...+-.|+++||.|+=|-+-. --+.+-..|+..+|.+..++..+
T Consensus 197 -~vT~PmAiaaGAsGVGVGSav------------n~Ln~~~aMva~vr~l~~al~~~ 240 (242)
T PF04481_consen 197 -AVTAPMAIAAGASGVGVGSAV------------NRLNDEVAMVAAVRSLVEALSSS 240 (242)
T ss_pred -hhhHHHHHHcCCcccchhHHh------------hhcccHHHHHHHHHHHHHHHhcC
Confidence 234556789999987554443 12234567888888888887653
No 109
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.86 E-value=0.2 Score=46.78 Aligned_cols=84 Identities=20% Similarity=0.130 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCCcEEEeecCcccHHHH-hh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHH
Q 022892 76 LKILEKVKIAYDIPIVTDVHETVQCEEV-GK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKV 153 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~~~~~l-~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i 153 (290)
...++++++++|++ ....+.+.+ ++ .+|++-|.+-+-.+.++...+-+.||+|++.+.++.|++|.+..++..
T Consensus 40 ~~~a~~~a~~~~~~-----~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a 114 (342)
T COG0673 40 PERAEAFAEEFGIA-----KAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELA 114 (342)
T ss_pred HHHHHHHHHHcCCC-----cccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 34478889999998 222334444 44 499999999999999999999999999999999999999999888877
Q ss_pred HHcCCCcEEEEe
Q 022892 154 RLAGNPNVMVCE 165 (290)
Q Consensus 154 ~~~Gn~~i~L~~ 165 (290)
++. +..+++.+
T Consensus 115 ~~~-~~~l~v~~ 125 (342)
T COG0673 115 RKA-GVKLMVGF 125 (342)
T ss_pred HHc-CCceeeeh
Confidence 665 33444433
No 110
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=94.83 E-value=0.46 Score=42.25 Aligned_cols=85 Identities=22% Similarity=0.184 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCcc----CCHHHHHHHHhc---CCeEEEeCCCCCCHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLC----RQTDLLVAAAKT---GKIINIKKGQFCASSV 145 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~----~n~~lL~~~a~~---~~PVilstG~~~tl~e 145 (290)
+.++.+.+.+..+|+.++.++++.+.+..+.+ .++++-+.+++. .+.++++++.+. +.||+..-|.. ++++
T Consensus 108 ~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~-s~ed 186 (217)
T cd00331 108 EQLKELYELARELGMEVLVEVHDEEELERALALGAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGIS-TPED 186 (217)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCC-CHHH
Confidence 56777888889999999999999988888777 599988887764 456677777653 68999999999 9999
Q ss_pred HHHHHHHHHHcCCCcEEE
Q 022892 146 MVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 146 ~~~Ave~i~~~Gn~~i~L 163 (290)
+..+.+ .|-.-+++
T Consensus 187 i~~~~~----~Ga~gviv 200 (217)
T cd00331 187 VKRLAE----AGADAVLI 200 (217)
T ss_pred HHHHHH----cCCCEEEE
Confidence 987654 46544443
No 111
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=94.78 E-value=0.36 Score=46.31 Aligned_cols=125 Identities=16% Similarity=0.126 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcc----------------
Q 022892 35 MAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETV---------------- 98 (290)
Q Consensus 35 ~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~---------------- 98 (290)
-+++|++ .|+|+||+=-|.. |-..+.--+ .. ..-++.+-+.|++.||||+-|+...+
T Consensus 112 s~~rike----~GadavK~Llyy~-pD~~~ein~-~k-~a~vervg~eC~a~dipf~lE~l~Yd~~~~d~~~~eyak~kP 184 (329)
T PRK04161 112 SVKRLKE----AGADAVKFLLYYD-VDGDEEIND-QK-QAYIERIGSECTAEDIPFFLELLTYDERISDNNSAAYAKLKP 184 (329)
T ss_pred hHHHHHH----hCCCeEEEEEEEC-CCCCHHHHH-HH-HHHHHHHHHHHHHCCCCeEEEEeccCCcccccccHHHHhhCh
Confidence 5788887 4999999866552 211111000 00 23456677789999999999987433
Q ss_pred -----cHHHHhh---hcceecc------------cCCcc--CCHHHH---HH-HHhcCCe-EEEeCCCCCCHHHHHHHHH
Q 022892 99 -----QCEEVGK---VADIIQI------------PAFLC--RQTDLL---VA-AAKTGKI-INIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 99 -----~~~~l~~---~~d~~kI------------gs~~~--~n~~lL---~~-~a~~~~P-VilstG~~~tl~e~~~Ave 151 (290)
.+..+.+ .+|++|| |..+. +.-+.. ++ ...+++| |+||.|.+ .+.....++
T Consensus 185 ~~V~~amkefs~~~~gvDVlKvEvPvn~~~veG~~~g~~~yt~~eA~~~f~~~~~~~~~P~i~LSaGV~--~~~F~~~l~ 262 (329)
T PRK04161 185 HKVNGAMKVFSDKRFGVDVLKVEVPVNMAYVEGFTEGEVVYSQEEAIKAFKDQEAATHLPYIYLSAGVS--AKLFQETLV 262 (329)
T ss_pred HHHHHHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhcccCCCEEEEcCCCC--HHHHHHHHH
Confidence 1223332 4999999 32221 222322 22 2346777 78898866 889999999
Q ss_pred HHHHcCCC-cEEEEeecC
Q 022892 152 KVRLAGNP-NVMVCERGT 168 (290)
Q Consensus 152 ~i~~~Gn~-~i~L~~~gs 168 (290)
.-.+.|.. +=+||=|-+
T Consensus 263 ~A~~aGa~fnGvL~GRAt 280 (329)
T PRK04161 263 FAAEAGAQFNGVLCGRAT 280 (329)
T ss_pred HHHhcCCCcccEEeehhh
Confidence 88877764 467766655
No 112
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.78 E-value=0.85 Score=43.03 Aligned_cols=85 Identities=14% Similarity=0.031 Sum_probs=56.4
Q ss_pred HHHHHHhcCCcEEEeecCcccHHHHhhh----------cceecccCCcc------------CCHHHHHHH----HhcCCe
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEEVGKV----------ADIIQIPAFLC------------RQTDLLVAA----AKTGKI 132 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~l~~~----------~d~~kIgs~~~------------~n~~lL~~~----a~~~~P 132 (290)
|+++.++-+..++-.+||.-++..+++. .+.+.++|..+ +-.+++..+ ..+..|
T Consensus 1 lr~~l~~~~~l~~p~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~P 80 (285)
T TIGR02320 1 LRQLLHSKPLERLMEAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKP 80 (285)
T ss_pred ChHHhcCCCCEEEecCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCC
Confidence 3455666677777788888877766554 66666655422 344444443 246889
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 133 INIKKGQFCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 133 VilstG~~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
|++.--..+++.++.+.|+.+.+.|-.-|+|
T Consensus 81 v~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~i 111 (285)
T TIGR02320 81 IILDGDTGGNFEHFRRLVRKLERRGVSAVCI 111 (285)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 6665333369999999999999998755555
No 113
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=94.76 E-value=2.2 Score=41.42 Aligned_cols=177 Identities=11% Similarity=0.139 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEE-eecCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVT-DVHETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s-~~~d~~~~~~l~~ 105 (290)
+.++.+++|+.|.+ +|++.+=..++- .+ ++.++.++.+.+. ....+++ ....+..++.+.+
T Consensus 20 s~~~k~~ia~~L~~----~Gv~~IEvG~p~----~~---------~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~ 82 (363)
T TIGR02090 20 TVEQKVEIARKLDE----LGVDVIEAGFPI----AS---------EGEFEAIKKISQEGLNAEICSLARALKKDIDKAID 82 (363)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEEeCCC----CC---------hHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHH
Confidence 67788899999888 499887654321 11 1223333333321 1112221 1234556666555
Q ss_pred -hcceecc--cCCccC-----------CH----HHHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 106 -VADIIQI--PAFLCR-----------QT----DLLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 106 -~~d~~kI--gs~~~~-----------n~----~lL~~~a~~~~PVils--tG~~~tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
.++++.| ++.+.. +. +.++.+.+.|..|.++ ...-.+++.+...++.+...|-..|.|+.
T Consensus 83 ~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~D 162 (363)
T TIGR02090 83 CGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIAD 162 (363)
T ss_pred cCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 4666655 332221 11 3445566678776665 44445889999999998889988888888
Q ss_pred ecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 166 RGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 166 ~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.... -+|.. +- ..+..+++ +++||++ +.|-. ..+...-+.+|+.+||+ .|+.-+.
T Consensus 163 T~G~-~~P~~-v~-~li~~l~~~~~~~l~~-H~Hnd------------------~GlA~AN~laA~~aGa~--~vd~s~~ 218 (363)
T TIGR02090 163 TVGV-LTPQK-ME-ELIKKLKENVKLPISV-HCHND------------------FGLATANSIAGVKAGAE--QVHVTVN 218 (363)
T ss_pred CCCc-cCHHH-HH-HHHHHHhcccCceEEE-EecCC------------------CChHHHHHHHHHHCCCC--EEEEEee
Confidence 7542 13322 21 34556666 6789999 67753 22334557788999998 7777664
Q ss_pred C
Q 022892 245 P 245 (290)
Q Consensus 245 ~ 245 (290)
.
T Consensus 219 G 219 (363)
T TIGR02090 219 G 219 (363)
T ss_pred c
Confidence 3
No 114
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.74 E-value=2.7 Score=38.59 Aligned_cols=182 Identities=15% Similarity=0.131 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~ 107 (290)
.-+++|+.+.+ .|++-+...-.+.+ ..+. ...+..+++++++. +|+.. =+-+.++++.+.+ .+
T Consensus 31 dP~~~A~~~~~----~ga~~lhivDLd~a-------~~g~--~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga 96 (241)
T PRK14114 31 DPAELVEKLIE----EGFTLIHVVDLSKA-------IENS--VENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGY 96 (241)
T ss_pred CHHHHHHHHHH----CCCCEEEEEECCCc-------ccCC--cchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCC
Confidence 35788888887 59887766555420 1111 23456666666665 45444 5677778877766 69
Q ss_pred ceecccCCccCCHHHHHHHHhcCCeEEEe----CC----------CCCCHHHHHHHHHHHHHcCCCcEEEEee--cCC-C
Q 022892 108 DIIQIPAFLCRQTDLLVAAAKTGKIINIK----KG----------QFCASSVMVNSAEKVRLAGNPNVMVCER--GTM-F 170 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~~~~PVils----tG----------~~~tl~e~~~Ave~i~~~Gn~~i~L~~~--gs~-~ 170 (290)
+.+-|||....|.++++++++.+--+++| .| +..++.||.. .+...|-..+++..= ..+ .
T Consensus 97 ~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~---~~~~~g~~~ii~tdI~rdGt~~ 173 (241)
T PRK14114 97 RRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLK---RLKEYGLEEIVHTEIEKDGTLQ 173 (241)
T ss_pred CEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHH---HHHhcCCCEEEEEeechhhcCC
Confidence 99999999999999999987654334542 22 2223444444 455667666665532 221 2
Q ss_pred CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc-----C-CCEEEEeeeC
Q 022892 171 GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV-----G-VDGVFMEVHD 243 (290)
Q Consensus 171 ~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~-----G-A~G~~IEkH~ 243 (290)
+| |+..+..+++ .++||++- +|.+.. ..+.. +..+ | ++|+++=+-+
T Consensus 174 G~-----d~el~~~l~~~~~~pvias--------------------GGv~s~-~Dl~~-l~~~~~~~~g~v~gvivg~Al 226 (241)
T PRK14114 174 EH-----DFSLTRKIAIEAEVKVFAA--------------------GGISSE-NSLKT-AQRVHRETNGLLKGVIVGRAF 226 (241)
T ss_pred Cc-----CHHHHHHHHHHCCCCEEEE--------------------CCCCCH-HHHHH-HHhcccccCCcEEEEEEehHH
Confidence 33 6677888877 78999871 122211 22332 2333 6 9999998876
Q ss_pred CCCCCCCCCCCCCChHHHHHH
Q 022892 244 DPLNAPVDGPTQWPLRNLEEL 264 (290)
Q Consensus 244 t~dka~~D~~~sl~p~~l~~l 264 (290)
|.-.++++++.+.
T Consensus 227 --------~~g~i~~~e~~~~ 239 (241)
T PRK14114 227 --------LEGILTVEVMKRY 239 (241)
T ss_pred --------HCCCCCHHHHHHh
Confidence 5556777665443
No 115
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=94.71 E-value=0.4 Score=44.73 Aligned_cols=85 Identities=15% Similarity=0.070 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCcEEEeec------------CcccHHH----Hhh-hcceecccCCccCCHHHHHHHHhcCCeEEEe
Q 022892 74 EGLKILEKVKIAYDIPIVTDVH------------ETVQCEE----VGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIK 136 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~------------d~~~~~~----l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVils 136 (290)
+.+..+.+.|+++|+|++..++ |++.+-+ -++ .+|++|+.--... ..|-+.+...+.||+++
T Consensus 130 ~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~-e~F~~vv~~~~vpVvia 208 (265)
T COG1830 130 ENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDP-ESFRRVVAACGVPVVIA 208 (265)
T ss_pred HHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCCh-HHHHHHHHhCCCCEEEe
Confidence 4566688899999999998432 3333332 223 4888888654433 35656677888999999
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCCC
Q 022892 137 KGQFC-ASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 137 tG~~~-tl~e~~~Ave~i~~~Gn~ 159 (290)
=|... +..|.++-+.-+..+|..
T Consensus 209 GG~k~~~~~~~l~~~~~ai~aGa~ 232 (265)
T COG1830 209 GGPKTETEREFLEMVTAAIEAGAM 232 (265)
T ss_pred CCCCCCChHHHHHHHHHHHHccCc
Confidence 99997 888888888777666653
No 116
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=94.71 E-value=0.4 Score=46.38 Aligned_cols=122 Identities=14% Similarity=0.096 Sum_probs=73.5
Q ss_pred HHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee--cCc---------------c----cHH
Q 022892 43 STKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV--HET---------------V----QCE 101 (290)
Q Consensus 43 a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~--~d~---------------~----~~~ 101 (290)
+.++|+|+|+...|.- |-..+.- +. .....+..+.+.|++.|+|++.++ +.. + .+.
T Consensus 115 a~~~GAdAVk~lv~~~-~d~~~~~-~~-~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r 191 (340)
T PRK12858 115 IKEAGADAVKLLLYYR-PDEDDAI-ND-RKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTME 191 (340)
T ss_pred HHHcCCCEEEEEEEeC-CCcchHH-HH-HHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHH
Confidence 3447999999987762 1101000 00 002457778899999999999984 332 1 122
Q ss_pred HHh--h-hcceecccCC-cc-------------CCH---H-HHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCC-
Q 022892 102 EVG--K-VADIIQIPAF-LC-------------RQT---D-LLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNP- 159 (290)
Q Consensus 102 ~l~--~-~~d~~kIgs~-~~-------------~n~---~-lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~- 159 (290)
.+. + .+|++|+.-- ++ +.. . +-+.+..++.|+++-.|-. +.+++.+.++.....|..
T Consensus 192 ~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~~A~~aGa~f 270 (340)
T PRK12858 192 EFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLEFACEAGADF 270 (340)
T ss_pred HHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHHHHHcCCCc
Confidence 333 3 4899999543 11 222 3 3333556899988855555 788899998887777653
Q ss_pred cEEEEeecC
Q 022892 160 NVMVCERGT 168 (290)
Q Consensus 160 ~i~L~~~gs 168 (290)
.=++|=|.+
T Consensus 271 ~Gvl~GRni 279 (340)
T PRK12858 271 SGVLCGRAT 279 (340)
T ss_pred cchhhhHHH
Confidence 345555544
No 117
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=94.70 E-value=2.5 Score=40.97 Aligned_cols=185 Identities=12% Similarity=0.048 Sum_probs=112.9
Q ss_pred cCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCC-hhHHHHHHHHHHHhcCCcEEEeecCcccHH
Q 022892 23 PNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPG-MVEGLKILEKVKIAYDIPIVTDVHETVQCE 101 (290)
Q Consensus 23 pcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~-~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~ 101 (290)
++..-+.++-+++|++|.+ +|++.|--.+|- .|+-.|. ++ -++-++.+++ ..+..+..-+.+.+.++
T Consensus 61 ~g~~~s~e~Ki~ia~~L~~----~GV~~IEvGs~v-spk~vPq----mad~~ev~~~i~~---~~~~~~~~l~~n~~die 128 (347)
T PLN02746 61 EKNIVPTSVKVELIQRLVS----SGLPVVEATSFV-SPKWVPQ----LADAKDVMAAVRN---LEGARFPVLTPNLKGFE 128 (347)
T ss_pred CCCCCCHHHHHHHHHHHHH----cCCCEEEECCCc-Ccccccc----cccHHHHHHHHHh---ccCCceeEEcCCHHHHH
Confidence 3433367888999999988 499988766553 2332222 11 1223444433 23344434345888998
Q ss_pred HHhh-hcceeccc--CCcc--------CCH-------HHHHHHHhcCCeEE--EeC-------CCCCCHHHHHHHHHHHH
Q 022892 102 EVGK-VADIIQIP--AFLC--------RQT-------DLLVAAAKTGKIIN--IKK-------GQFCASSVMVNSAEKVR 154 (290)
Q Consensus 102 ~l~~-~~d~~kIg--s~~~--------~n~-------~lL~~~a~~~~PVi--lst-------G~~~tl~e~~~Ave~i~ 154 (290)
...+ .++.+.|. +.+. +-. +.++.+-+.|+.|. +++ |.. +++.+.+.++.+.
T Consensus 129 ~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~-~~~~l~~~~~~~~ 207 (347)
T PLN02746 129 AAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPV-PPSKVAYVAKELY 207 (347)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCC-CHHHHHHHHHHHH
Confidence 8877 58876555 2221 111 24444456677775 554 444 7899999999999
Q ss_pred HcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCC-CEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc
Q 022892 155 LAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANC-PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV 232 (290)
Q Consensus 155 ~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~-pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~ 232 (290)
..|-+.|.|+.-...- .|.. +- .-+..+++ ++. ||.+ +.|-. +.+...-+.+|+.+
T Consensus 208 ~~Gad~I~l~DT~G~a-~P~~-v~-~lv~~l~~~~~~~~i~~-H~Hnd------------------~GlA~AN~lAA~~a 265 (347)
T PLN02746 208 DMGCYEISLGDTIGVG-TPGT-VV-PMLEAVMAVVPVDKLAV-HFHDT------------------YGQALANILVSLQM 265 (347)
T ss_pred HcCCCEEEecCCcCCc-CHHH-HH-HHHHHHHHhCCCCeEEE-EECCC------------------CChHHHHHHHHHHh
Confidence 9999888888876531 2221 11 34555666 664 7888 77753 22334557789999
Q ss_pred CCCEEEEeeeCC
Q 022892 233 GVDGVFMEVHDD 244 (290)
Q Consensus 233 GA~G~~IEkH~t 244 (290)
||+ +++.-+.
T Consensus 266 Ga~--~vd~sv~ 275 (347)
T PLN02746 266 GIS--TVDSSVA 275 (347)
T ss_pred CCC--EEEEecc
Confidence 998 7887665
No 118
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=94.70 E-value=0.43 Score=46.26 Aligned_cols=112 Identities=22% Similarity=0.183 Sum_probs=81.4
Q ss_pred eecccCCccCCHHHHHHH-----HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCCCchhH
Q 022892 109 IIQIPAFLCRQTDLLVAA-----AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNL 182 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~-----a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~~~~dL~~i 182 (290)
--..||+.+.|.+|+.++ +.++.||-+|-=.+.++++-.+=+..+..+|...+.+-=|+-.- +.-..-+|+.+|
T Consensus 115 ~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i 194 (358)
T KOG2335|consen 115 RGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAI 194 (358)
T ss_pred cCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHH
Confidence 456899999999988553 46899999998888888888888888888998766665554321 211234799999
Q ss_pred HHHHh-cC-CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 183 EWMRE-AN-CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 183 ~~lk~-~~-~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
..+|+ .. +||+.+.+= ..+..+-+....-||+|+|.=.
T Consensus 195 ~~v~~~~~~ipviaNGnI---------------------~~~~d~~~~~~~tG~dGVM~ar 234 (358)
T KOG2335|consen 195 KAVRENVPDIPVIANGNI---------------------LSLEDVERCLKYTGADGVMSAR 234 (358)
T ss_pred HHHHHhCcCCcEEeeCCc---------------------CcHHHHHHHHHHhCCceEEecc
Confidence 99998 55 999885321 1124556666678999999865
No 119
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=94.64 E-value=3.2 Score=37.82 Aligned_cols=185 Identities=18% Similarity=0.193 Sum_probs=106.0
Q ss_pred eEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChh----HH-----HHHHHHHHHhcC
Q 022892 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMV----EG-----LKILEKVKIAYD 87 (290)
Q Consensus 17 ~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~----~~-----l~~L~~~~~~~G 87 (290)
+|+.||=- |.+...++++.|.+ . +|++=.+. |-+.|. ..|.-++ .. ++.++++++...
T Consensus 8 ~y~~~G~p---~~~~~~~~~~~l~~----~-ad~iElgi----p~sdp~-adG~~i~~~~~~a~~~g~~~~v~~vr~~~~ 74 (244)
T PRK13125 8 VYLTAGYP---NVESFKEFIIGLVE----L-VDILELGI----PPKYPK-YDGPVIRKSHRKVKGLDIWPLLEEVRKDVS 74 (244)
T ss_pred EEEeCCCC---CHHHHHHHHHHHHh----h-CCEEEECC----CCCCCC-CCCHHHHHHHHHHHHcCcHHHHHHHhccCC
Confidence 46666644 56778888888865 3 88876653 222222 1222121 22 367888887788
Q ss_pred CcEEE----e--ecCccc-HHHHhh-hcceecccC--Cc-c-CCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 88 IPIVT----D--VHETVQ-CEEVGK-VADIIQIPA--FL-C-RQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 88 i~~~s----~--~~d~~~-~~~l~~-~~d~~kIgs--~~-~-~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
+|+.- . ..++.. ++.+.+ .++.+-|.. .+ . .-..+++.+-+.|+.+++--...-+.++++..++.
T Consensus 75 ~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~--- 151 (244)
T PRK13125 75 VPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKL--- 151 (244)
T ss_pred CCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh---
Confidence 89742 2 223333 444444 588888874 22 1 22357777888888766666665256777665542
Q ss_pred cCCCcEEEEeecCCCCCCC-CCCCc-hhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHH
Q 022892 156 AGNPNVMVCERGTMFGYND-LIVDP-RNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIA 231 (290)
Q Consensus 156 ~Gn~~i~L~~~gs~~~y~~-~~~dL-~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva 231 (290)
.+.++++ +++.++.. ...++ ..+..+|+ . +.||.+|..=. . +.-+..+..
T Consensus 152 --~~~~l~m--sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~-----------------~-----~e~i~~~~~ 205 (244)
T PRK13125 152 --SPLFIYY--GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLD-----------------S-----PEDARDALS 205 (244)
T ss_pred --CCCEEEE--EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcC-----------------C-----HHHHHHHHH
Confidence 2346655 33322211 11222 35666777 4 57887753321 1 345556678
Q ss_pred cCCCEEEEeeeC
Q 022892 232 VGVDGVFMEVHD 243 (290)
Q Consensus 232 ~GA~G~~IEkH~ 243 (290)
.||||+++=+.+
T Consensus 206 ~gaD~vvvGSai 217 (244)
T PRK13125 206 AGADGVVVGTAF 217 (244)
T ss_pred cCCCEEEECHHH
Confidence 999999999877
No 120
>PRK04302 triosephosphate isomerase; Provisional
Probab=94.63 E-value=3.2 Score=37.26 Aligned_cols=137 Identities=19% Similarity=0.154 Sum_probs=73.3
Q ss_pred HHHHHHHHHhcCCcEEEeecCcc---------cHHHHhh-hcceecccCCccC-----CHHHHHHHHhcCCeEEEeCCCC
Q 022892 76 LKILEKVKIAYDIPIVTDVHETV---------QCEEVGK-VADIIQIPAFLCR-----QTDLLVAAAKTGKIINIKKGQF 140 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~---------~~~~l~~-~~d~~kIgs~~~~-----n~~lL~~~a~~~~PVilstG~~ 140 (290)
+..|..++++.++++.+.-++.. .++.+.+ .++++-|+-.+-. -..+++.+-+.|..+++..|
T Consensus 45 ~~~l~~v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~-- 122 (223)
T PRK04302 45 ALDIRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVN-- 122 (223)
T ss_pred HHHHHHHHHhcCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcC--
Confidence 33444444455777776443332 2566666 5777777763211 11456667778998888887
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEee----cCCC---CCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCC
Q 022892 141 CASSVMVNSAEKVRLAGNPNVMVCER----GTMF---GYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGG 211 (290)
Q Consensus 141 ~tl~e~~~Ave~i~~~Gn~~i~L~~~----gs~~---~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~ 211 (290)
+.+++..+ ...|. .++-++- |+.. .++...+. ..+..+++ . ++||++-..=.
T Consensus 123 -~~~~~~~~----~~~~~-~~I~~~p~~~igt~~~~~~~~~~~i~-~~~~~ir~~~~~~pvi~GggI~------------ 183 (223)
T PRK04302 123 -NPETSAAA----AALGP-DYVAVEPPELIGTGIPVSKAKPEVVE-DAVEAVKKVNPDVKVLCGAGIS------------ 183 (223)
T ss_pred -CHHHHHHH----hcCCC-CEEEEeCccccccCCCCCcCCHHHHH-HHHHHHHhccCCCEEEEECCCC------------
Confidence 46666643 23343 3443332 1110 12222121 33444665 3 68988722211
Q ss_pred CccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 212 GVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 212 ~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
. +..+..+...||||+++=+-+
T Consensus 184 -----~-----~e~~~~~~~~gadGvlVGsa~ 205 (223)
T PRK04302 184 -----T-----GEDVKAALELGADGVLLASGV 205 (223)
T ss_pred -----C-----HHHHHHHHcCCCCEEEEehHH
Confidence 1 344555677999999886654
No 121
>PRK08227 autoinducer 2 aldolase; Validated
Probab=94.61 E-value=0.46 Score=44.41 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=68.0
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCccc-------------HHHHhh-h
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQ-------------CEEVGK-V 106 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~-------------~~~l~~-~ 106 (290)
+.|-++|+|+|....|.- +. +. ...-+.+..+.+.|+++|+|++. ++ +.- +....+ .
T Consensus 101 eeAvrlGAdAV~~~v~~G----s~--~E-~~~l~~l~~v~~ea~~~G~Plla-~~-prG~~~~~~~~~ia~aaRiaaELG 171 (264)
T PRK08227 101 EDAVRLNACAVAAQVFIG----SE--YE-HQSIKNIIQLVDAGLRYGMPVMA-VT-AVGKDMVRDARYFSLATRIAAEMG 171 (264)
T ss_pred HHHHHCCCCEEEEEEecC----CH--HH-HHHHHHHHHHHHHHHHhCCcEEE-Ee-cCCCCcCchHHHHHHHHHHHHHHc
Confidence 345567888887766551 00 00 00113455677888999999998 22 322 112234 4
Q ss_pred cceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCC
Q 022892 107 ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 107 ~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~ 159 (290)
+|++|+.--. ..|-+.+...+.||++.=|...+.+|+++-++-....|..
T Consensus 172 ADiVK~~y~~---~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~ 221 (264)
T PRK08227 172 AQIIKTYYVE---EGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEGAS 221 (264)
T ss_pred CCEEecCCCH---HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCc
Confidence 8999988653 3454556777899999999987777787777766666653
No 122
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=94.57 E-value=0.62 Score=44.05 Aligned_cols=137 Identities=13% Similarity=0.127 Sum_probs=89.1
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
..|++..++-++.++-.+||.-++..+++ ..+.+.++|.-+.. .+|.| -.|.. +++|+...+..|..
T Consensus 5 ~~lr~~l~~~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~--------slG~p---D~g~l-~~~e~~~~~~~I~~ 72 (290)
T TIGR02321 5 QALRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSA--------SYAVP---DANIL-SMSTHLEMMRAIAS 72 (290)
T ss_pred HHHHHHHhCCCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHH--------HCCCC---CcccC-CHHHHHHHHHHHHh
Confidence 35788888888888999999999888877 67777777764432 24666 33444 77777777665431
Q ss_pred cCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCC
Q 022892 156 AGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 235 (290)
Q Consensus 156 ~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~ 235 (290)
..++||++|.+.+- |...-+....+....+|+.
T Consensus 73 -------------------------------~~~lPv~aD~d~Gy----------------G~~~~v~~tV~~~~~aGva 105 (290)
T TIGR02321 73 -------------------------------TVSIPLIADIDTGF----------------GNAVNVHYVVPQYEAAGAS 105 (290)
T ss_pred -------------------------------ccCCCEEEECCCCC----------------CCcHHHHHHHHHHHHcCCe
Confidence 03579999999874 3222234445566789999
Q ss_pred EEEEeeeCCCCCC--CCCCCCC-CChHHHHHHHHHHHHHHHHh
Q 022892 236 GVFMEVHDDPLNA--PVDGPTQ-WPLRNLEELLEELVAIAKVS 275 (290)
Q Consensus 236 G~~IEkH~t~dka--~~D~~~s-l~p~~l~~lv~~ir~~~~~l 275 (290)
|+.||-...|.+. +.+++.. .+++ ++++.|+.+..+.
T Consensus 106 gi~IEDq~~pk~cg~~~~g~~~l~~~e---e~~~kI~Aa~~a~ 145 (290)
T TIGR02321 106 AIVMEDKTFPKDTSLRTDGRQELVRIE---EFQGKIAAATAAR 145 (290)
T ss_pred EEEEeCCCCCcccccccCCCccccCHH---HHHHHHHHHHHhC
Confidence 9999987666552 1234333 3444 5555666555553
No 123
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=94.56 E-value=1.4 Score=40.90 Aligned_cols=177 Identities=12% Similarity=0.082 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-h
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-V 106 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~ 106 (290)
+.++..++++.|.+ +|++.|=..+ |..++.. .+..+.+.+...+.++ +..-..+.+.++...+ .
T Consensus 20 s~~~k~~i~~~L~~----~Gv~~IEvG~----P~~~~~~------~~~~~~l~~~~~~~~v-~~~~r~~~~di~~a~~~g 84 (262)
T cd07948 20 DTEDKIEIAKALDA----FGVDYIELTS----PAASPQS------RADCEAIAKLGLKAKI-LTHIRCHMDDARIAVETG 84 (262)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEEEC----CCCCHHH------HHHHHHHHhCCCCCcE-EEEecCCHHHHHHHHHcC
Confidence 67788888888888 5998876653 3333221 1223333322222222 2223556667777666 5
Q ss_pred cceecccC--Cc--------c---CCHH----HHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcEEEEeec
Q 022892 107 ADIIQIPA--FL--------C---RQTD----LLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRLAGNPNVMVCERG 167 (290)
Q Consensus 107 ~d~~kIgs--~~--------~---~n~~----lL~~~a~~~~PVils--tG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~g 167 (290)
++.+-|-- .+ . .+.+ .++++-..|..|-+. .....+++.+.+.++.+...|-..+.|+...
T Consensus 85 ~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~ 164 (262)
T cd07948 85 VDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIADTV 164 (262)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECCcC
Confidence 67655522 11 1 1122 223444556666554 3444468888888888888898877777765
Q ss_pred CCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 168 TMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 168 s~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.. -+|.. +. .-+..+++ +++|+++ +.|-. +.+...-+.+|+..||+ +++.-+
T Consensus 165 G~-~~P~~-v~-~~~~~~~~~~~~~i~~-H~Hn~------------------~Gla~an~~~a~~aG~~--~vd~s~ 217 (262)
T cd07948 165 GI-ATPRQ-VY-ELVRTLRGVVSCDIEF-HGHND------------------TGCAIANAYAALEAGAT--HIDTTV 217 (262)
T ss_pred CC-CCHHH-HH-HHHHHHHHhcCCeEEE-EECCC------------------CChHHHHHHHHHHhCCC--EEEEec
Confidence 53 13321 22 34556677 7789998 77753 22224456788999998 777654
No 124
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=94.54 E-value=0.28 Score=46.97 Aligned_cols=139 Identities=20% Similarity=0.138 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHH-----HhcC-CeEEEeCCCCCCHHH--
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAA-----AKTG-KIINIKKGQFCASSV-- 145 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~-----a~~~-~PVilstG~~~tl~e-- 145 (290)
+.+.+..+.+.+.|...+-==+--.+- .+-=-..||..+.|.+++.++ ...+ +||=+|.=..-+-.+
T Consensus 79 ~~l~eaA~~~~~~g~~~IdlN~GCP~~-----~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~ 153 (323)
T COG0042 79 ELLAEAAKIAEELGADIIDLNCGCPSP-----KVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDIL 153 (323)
T ss_pred HHHHHHHHHHHhcCCCEEeeeCCCChH-----HhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCccccc
Confidence 567777777777775443211111111 111234588899999877543 2343 899999877755554
Q ss_pred HHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cC-CCEEEeCC-CCCCCCCCCccCCCCccCCCCcccH
Q 022892 146 MVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN-CPVVADVT-HSLQQPAGKKLDGGGVASGGLRELI 222 (290)
Q Consensus 146 ~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~-~pV~~D~s-Hs~~~~~~~~~~~~~~~~~g~~~~~ 222 (290)
....+..+...|...+++-=|+-.-.|... .|+..|..+|+ .. +||+.+.+ .+
T Consensus 154 ~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~-ad~~~I~~vk~~~~~ipvi~NGdI~s----------------------- 209 (323)
T COG0042 154 ALEIARILEDAGADALTVHGRTRAQGYLGP-ADWDYIKELKEAVPSIPVIANGDIKS----------------------- 209 (323)
T ss_pred HHHHHHHHHhcCCCEEEEecccHHhcCCCc-cCHHHHHHHHHhCCCCeEEeCCCcCC-----------------------
Confidence 556666777777765555445432234322 79999999999 66 99988654 22
Q ss_pred HHHHHHHHH-cCCCEEEEee
Q 022892 223 PCIARTAIA-VGVDGVFMEV 241 (290)
Q Consensus 223 ~~~a~aAva-~GA~G~~IEk 241 (290)
..-++.... .|+||+||=.
T Consensus 210 ~~~a~~~l~~tg~DgVMigR 229 (323)
T COG0042 210 LEDAKEMLEYTGADGVMIGR 229 (323)
T ss_pred HHHHHHHHHhhCCCEEEEcH
Confidence 334444444 5799999864
No 125
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=94.47 E-value=0.78 Score=44.54 Aligned_cols=133 Identities=18% Similarity=0.105 Sum_probs=80.1
Q ss_pred HHHHHH-HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeC
Q 022892 121 DLLVAA-AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADV 196 (290)
Q Consensus 121 ~lL~~~-a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~ 196 (290)
+.|+.+ ..+++||++| |.. +.++.+.+++ .|-+-|++...|...-+. ....+..++.+++ . .+||+.|.
T Consensus 211 ~~l~~lr~~~~~PvivK-gv~-~~~dA~~a~~----~G~d~I~vsnhGGr~ld~-~~~~~~~l~~i~~a~~~~i~vi~dG 283 (351)
T cd04737 211 ADIEFIAKISGLPVIVK-GIQ-SPEDADVAIN----AGADGIWVSNHGGRQLDG-GPASFDSLPEIAEAVNHRVPIIFDS 283 (351)
T ss_pred HHHHHHHHHhCCcEEEe-cCC-CHHHHHHHHH----cCCCEEEEeCCCCccCCC-CchHHHHHHHHHHHhCCCCeEEEEC
Confidence 444555 4578999999 554 7888776654 577777776555432111 1134567777766 4 58998864
Q ss_pred CCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhC
Q 022892 197 THSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 197 sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg 276 (290)
.=. .| ..+. .|+++||+|++|-.-+--.-+. ++.. --..-++.|.++++..-..+|
T Consensus 284 GIr----------------~g-----~Di~-kaLalGA~~V~iGr~~l~~la~-~G~~-gv~~~l~~l~~El~~~m~l~G 339 (351)
T cd04737 284 GVR----------------RG-----EHVF-KALASGADAVAVGRPVLYGLAL-GGAQ-GVASVLEHLNKELKIVMQLAG 339 (351)
T ss_pred CCC----------------CH-----HHHH-HHHHcCCCEEEECHHHHHHHhh-chHH-HHHHHHHHHHHHHHHHHHHHC
Confidence 432 13 3444 4688999999999865221100 1100 012356677777777777888
Q ss_pred CccccccC
Q 022892 277 GKQRMNID 284 (290)
Q Consensus 277 ~~~~~~~~ 284 (290)
.+++-++.
T Consensus 340 ~~~i~el~ 347 (351)
T cd04737 340 TRTIEDVK 347 (351)
T ss_pred CCCHHHhC
Confidence 77665543
No 126
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=94.43 E-value=4.3 Score=40.95 Aligned_cols=182 Identities=15% Similarity=0.176 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEecc---ccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEE--eec------
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKS---SFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVT--DVH------ 95 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~---~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s--~~~------ 95 (290)
+.+..++.|+.|.+ +|++.+=.. +|.. .++|-. ++.++.++++++. .+.++.+ ..-
T Consensus 23 ~t~dkl~Ia~~Ld~----~Gv~~IE~~ggatfd~-----~~~Fl~---e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~ 90 (467)
T PRK14041 23 RTEDMLPALEAFDR----MGFYSMEVWGGATFDV-----CVRFLN---ENPWERLKEIRKRLKNTKIQMLLRGQNLVGYR 90 (467)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEecCCccchh-----hhcccC---CCHHHHHHHHHHhCCCCEEEEEeccccccCcc
Confidence 56777888888887 498776431 1110 012321 3345555555544 3444433 321
Q ss_pred -Cccc-----HHHHhh-hcceecccCC--ccCCHH-HHHHHHhcCCeEE--Ee--CCCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 96 -ETVQ-----CEEVGK-VADIIQIPAF--LCRQTD-LLVAAAKTGKIIN--IK--KGQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 96 -d~~~-----~~~l~~-~~d~~kIgs~--~~~n~~-lL~~~a~~~~PVi--ls--tG~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
.+++ ++...+ .+|++.|.-. +..|.. .++.+-+.|+-|. ++ .+.-.+++-+.+.++.+...|.+.|
T Consensus 91 ~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I 170 (467)
T PRK14041 91 HYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSI 170 (467)
T ss_pred cccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 2333 444444 5777766533 334443 3344556677655 22 1223378889999998999998888
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
.|+.-.... .|. .+ ..-+..+|+ +++||.+ +.|.. .| +...-+.+|+.+||+ +|.
T Consensus 171 ~i~Dt~G~l-~P~-~v-~~Lv~~lk~~~~vpI~~-H~Hnt---------------~G---lA~AN~laAieaGad--~vD 226 (467)
T PRK14041 171 CIKDMAGLL-TPK-RA-YELVKALKKKFGVPVEV-HSHCT---------------TG---LASLAYLAAVEAGAD--MFD 226 (467)
T ss_pred EECCccCCc-CHH-HH-HHHHHHHHHhcCCceEE-EecCC---------------CC---cHHHHHHHHHHhCCC--EEE
Confidence 887766531 121 12 145666777 7899999 88864 12 225557789999998 788
Q ss_pred eeCCC
Q 022892 241 VHDDP 245 (290)
Q Consensus 241 kH~t~ 245 (290)
.-..+
T Consensus 227 ~sv~~ 231 (467)
T PRK14041 227 TAISP 231 (467)
T ss_pred eeccc
Confidence 76653
No 127
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=94.43 E-value=2.2 Score=44.24 Aligned_cols=211 Identities=16% Similarity=0.197 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEec---cccccCCCCCcccCCCCChhHHHHHHHHHHHh---cCCcEEE-------ee
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFK---SSFDKANRTSSKSFRGPGMVEGLKILEKVKIA---YDIPIVT-------DV 94 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~---~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~---~Gi~~~s-------~~ 94 (290)
+.++.+..|+.|-++ |++.+=. .+|.. .+.-++ +..|+.|+.+++. ..+-.+. -.
T Consensus 25 ~~~d~l~ia~~ld~~----G~~siE~~GGatf~~-------~~~~~~-e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~ 92 (593)
T PRK14040 25 RLDDMLPIAAKLDKV----GYWSLESWGGATFDA-------CIRFLG-EDPWERLRELKKAMPNTPQQMLLRGQNLLGYR 92 (593)
T ss_pred CHHHHHHHHHHHHHc----CCCEEEecCCcchhh-------hccccC-CCHHHHHHHHHHhCCCCeEEEEecCcceeccc
Confidence 567788888888884 9887643 11221 122222 3445555555432 2222222 22
Q ss_pred cCccc-----HHHHhh-hcceecccCCc--cCCHH-HHHHHHhcCCeE--EEe--CCCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 95 HETVQ-----CEEVGK-VADIIQIPAFL--CRQTD-LLVAAAKTGKII--NIK--KGQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 95 ~d~~~-----~~~l~~-~~d~~kIgs~~--~~n~~-lL~~~a~~~~PV--ils--tG~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
..+++ ++...+ .+|++-|.... +.|.. .++.+-+.|+-+ .++ ...-.|++.+.+.++.+...|-+.|
T Consensus 93 ~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i 172 (593)
T PRK14040 93 HYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSL 172 (593)
T ss_pred cCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEE
Confidence 22333 555555 58888887432 23332 345555677753 233 2333488999999999998998878
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
.|+.-.... .|. .+. .-+..+|+ +++||++ ++|.. .| +...-+.+|+.+||+ +|.
T Consensus 173 ~i~Dt~G~l-~P~-~~~-~lv~~lk~~~~~pi~~-H~Hnt---------------~G---lA~An~laAieAGa~--~vD 228 (593)
T PRK14040 173 CIKDMAGLL-KPY-AAY-ELVSRIKKRVDVPLHL-HCHAT---------------TG---LSTATLLKAIEAGID--GVD 228 (593)
T ss_pred EECCCCCCc-CHH-HHH-HHHHHHHHhcCCeEEE-EECCC---------------Cc---hHHHHHHHHHHcCCC--EEE
Confidence 887765531 111 122 45667777 8899999 88874 13 224556788999998 777
Q ss_pred eeCCCCCCC---------------CCCCCCCChHHHHHHHHHHHHHHHH
Q 022892 241 VHDDPLNAP---------------VDGPTQWPLRNLEELLEELVAIAKV 274 (290)
Q Consensus 241 kH~t~dka~---------------~D~~~sl~p~~l~~lv~~ir~~~~~ 274 (290)
.-+..=-.. .+...-++++.|.++-+.++++...
T Consensus 229 ~ai~glG~~~Gn~~le~vv~~L~~~~~~~gidl~~l~~is~~~~~v~~~ 277 (593)
T PRK14040 229 TAISSMSMTYGHSATETLVATLEGTERDTGLDILKLEEIAAYFREVRKK 277 (593)
T ss_pred eccccccccccchhHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 655431110 1223346666666555555555443
No 128
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.42 E-value=0.72 Score=44.56 Aligned_cols=162 Identities=11% Similarity=0.053 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCC-cEEE---eecCcccHHHHhhh
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDI-PIVT---DVHETVQCEEVGKV 106 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi-~~~s---~~~d~~~~~~l~~~ 106 (290)
...++|..|.+. |.-.++--.|. ++++..+.++...+.+. ..++ .+.|.+-++.|.+.
T Consensus 57 ~~~~mA~~la~~----g~~~~iHk~~~--------------~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a 118 (343)
T TIGR01305 57 GTFEMAAALSQH----SIFTAIHKHYS--------------VDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEA 118 (343)
T ss_pred cCHHHHHHHHHC----CCeEEEeeCCC--------------HHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhc
Confidence 457888887763 64444432222 35667777665544332 2223 34455555555552
Q ss_pred ---cceecccCCccCCH---HHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE-----eecCCC----
Q 022892 107 ---ADIIQIPAFLCRQT---DLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC-----ERGTMF---- 170 (290)
Q Consensus 107 ---~d~~kIgs~~~~n~---~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~-----~~gs~~---- 170 (290)
+|++.|-+..=.+. +.++.+-+ .+.+.+++=+.. |.+..+++++ .|-+-+.+. -|+++-
T Consensus 119 ~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~-T~e~a~~Li~----aGAD~ikVgiGpGSicttR~~~Gv 193 (343)
T TIGR01305 119 VPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVV-TGEMVEELIL----SGADIVKVGIGPGSVCTTRTKTGV 193 (343)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEeccc-CHHHHHHHHH----cCCCEEEEcccCCCcccCceeCCC
Confidence 78888877766444 44455543 355677776677 9988887654 577666666 687751
Q ss_pred CCCCCCCCchhHHHHHh----cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 171 GYNDLIVDPRNLEWMRE----ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 171 ~y~~~~~dL~~i~~lk~----~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
++| .+.+++...+ +++||+.|.-=- ++| .+++ |+++||+.+||=.
T Consensus 194 g~p----qltAv~~~a~aa~~~~v~VIaDGGIr---------------~~g------DI~K-ALA~GAd~VMlG~ 242 (343)
T TIGR01305 194 GYP----QLSAVIECADAAHGLKGHIISDGGCT---------------CPG------DVAK-AFGAGADFVMLGG 242 (343)
T ss_pred CcC----HHHHHHHHHHHhccCCCeEEEcCCcC---------------chh------HHHH-HHHcCCCEEEECH
Confidence 344 3566666544 478998874321 122 4554 6899999999864
No 129
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=94.38 E-value=0.53 Score=46.01 Aligned_cols=132 Identities=19% Similarity=0.122 Sum_probs=80.1
Q ss_pred HHHHHH-HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeC
Q 022892 121 DLLVAA-AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADV 196 (290)
Q Consensus 121 ~lL~~~-a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~ 196 (290)
+.|+.+ ..++.||++| |.. +.++.+.++ ..|-.-|.+.-.|.+-.|.. ..++..++.+++ . .+||++|.
T Consensus 218 ~~i~~l~~~~~~PvivK-Gv~-~~eda~~a~----~~Gvd~I~VS~HGGrq~~~~-~a~~~~L~ei~~av~~~i~vi~dG 290 (367)
T TIGR02708 218 RDIEEIAGYSGLPVYVK-GPQ-CPEDADRAL----KAGASGIWVTNHGGRQLDGG-PAAFDSLQEVAEAVDKRVPIVFDS 290 (367)
T ss_pred HHHHHHHHhcCCCEEEe-CCC-CHHHHHHHH----HcCcCEEEECCcCccCCCCC-CcHHHHHHHHHHHhCCCCcEEeeC
Confidence 345655 4568999999 766 777777665 46877777766665422221 134567888876 4 48999874
Q ss_pred CCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhC
Q 022892 197 THSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 197 sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg 276 (290)
.=-. | ..+. -|.++||++++|-..+--.-+. ++ +.--..-++.|..+++..-..+|
T Consensus 291 GIr~----------------g-----~Dv~-KaLalGAd~V~igR~~l~~la~-~G-~~gv~~~l~~l~~El~~~M~l~G 346 (367)
T TIGR02708 291 GVRR----------------G-----QHVF-KALASGADLVALGRPVIYGLAL-GG-SQGARQVFEYLNKELKRVMQLTG 346 (367)
T ss_pred CcCC----------------H-----HHHH-HHHHcCCCEEEEcHHHHHHHHh-cC-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 4321 3 3444 4678999999998875221111 11 00011245666677777777778
Q ss_pred Ccccccc
Q 022892 277 GKQRMNI 283 (290)
Q Consensus 277 ~~~~~~~ 283 (290)
.+++-++
T Consensus 347 ~~~i~eL 353 (367)
T TIGR02708 347 TQTIEDV 353 (367)
T ss_pred CCCHHHh
Confidence 7666544
No 130
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=94.38 E-value=0.14 Score=47.49 Aligned_cols=76 Identities=18% Similarity=0.085 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHH----HHHHHH---hcCCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTD----LLVAAA---KTGKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~----lL~~~a---~~~~PVilstG~~~tl~ 144 (290)
.+.+++|.++++++|+.+++|++|.+.++...+ ..+++-|-.|+++.+. --+.++ .....++-..|.. |++
T Consensus 142 ~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~-~~~ 220 (254)
T COG0134 142 DEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGIS-TPE 220 (254)
T ss_pred HHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCC-CHH
Confidence 466999999999999999999999999999877 6889999999884432 112222 2345677778888 888
Q ss_pred HHHHH
Q 022892 145 VMVNS 149 (290)
Q Consensus 145 e~~~A 149 (290)
|+...
T Consensus 221 dv~~l 225 (254)
T COG0134 221 DVRRL 225 (254)
T ss_pred HHHHH
Confidence 88764
No 131
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=94.37 E-value=0.78 Score=46.61 Aligned_cols=119 Identities=15% Similarity=0.194 Sum_probs=84.3
Q ss_pred CCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEE
Q 022892 13 AAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIV 91 (290)
Q Consensus 13 ~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~ 91 (290)
..+++.+=|-.+. + ...++.++.|++ +|+|+|....- +|.. ...|..++++.+++ +++++
T Consensus 233 ~~~~l~vgaavg~--~-~~~~~r~~~l~~----ag~d~i~iD~~-----------~g~~-~~~~~~i~~ik~~~p~~~vi 293 (505)
T PLN02274 233 KDGKLLVGAAIGT--R-ESDKERLEHLVK----AGVDVVVLDSS-----------QGDS-IYQLEMIKYIKKTYPELDVI 293 (505)
T ss_pred CCCCEEEEEEEcC--C-ccHHHHHHHHHH----cCCCEEEEeCC-----------CCCc-HHHHHHHHHHHHhCCCCcEE
Confidence 3457666665554 3 345899999998 49999987541 1222 35567777777777 68886
Q ss_pred E-eecCcccHHHHhh-hcceeccc--CC--------------ccCCHHHHHHHH-hcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 92 T-DVHETVQCEEVGK-VADIIQIP--AF--------------LCRQTDLLVAAA-KTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 92 s-~~~d~~~~~~l~~-~~d~~kIg--s~--------------~~~n~~lL~~~a-~~~~PVilstG~~~tl~e~~~Ave 151 (290)
. .+-..+.+..+.+ .+|++++| ++ ..+...++.+++ ..+.|||..-|.. +..++..|..
T Consensus 294 ~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~-~~~di~kAla 371 (505)
T PLN02274 294 GGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGIS-NSGHIVKALT 371 (505)
T ss_pred EecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCC-CHHHHHHHHH
Confidence 5 8999999999888 79999886 22 112333455544 4689999999999 9999998865
No 132
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=94.37 E-value=0.96 Score=45.83 Aligned_cols=118 Identities=18% Similarity=0.209 Sum_probs=79.5
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s 92 (290)
.+++.|=|-.+. +.+ .++.++.|++ +|+++|-...-. |.. ...++.++++.+++ +++++.
T Consensus 227 ~GrL~Vgaavg~--~~~-~~~~~~~l~~----ag~d~i~id~a~-----------G~s-~~~~~~i~~ik~~~~~~~v~a 287 (495)
T PTZ00314 227 NGQLLVGAAIST--RPE-DIERAAALIE----AGVDVLVVDSSQ-----------GNS-IYQIDMIKKLKSNYPHVDIIA 287 (495)
T ss_pred CCCEEEEEEECC--CHH-HHHHHHHHHH----CCCCEEEEecCC-----------CCc-hHHHHHHHHHHhhCCCceEEE
Confidence 456666455443 343 4899999988 599998765311 111 23355566666665 789888
Q ss_pred -eecCcccHHHHhh-hcceeccc--CCc-c-C---------CHHHH----HHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 93 -DVHETVQCEEVGK-VADIIQIP--AFL-C-R---------QTDLL----VAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 93 -~~~d~~~~~~l~~-~~d~~kIg--s~~-~-~---------n~~lL----~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
++.+++.+..+.+ .+|++++| ++. + + +...+ +.+.+.+.|||-.=|.. +..|+..|..
T Consensus 288 G~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~-~~~di~kAla 364 (495)
T PTZ00314 288 GNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIK-NSGDICKALA 364 (495)
T ss_pred CCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCC-CHHHHHHHHH
Confidence 9999999999888 79999975 331 1 1 22222 22334689999999998 9999999865
No 133
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=94.36 E-value=0.51 Score=42.06 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hccee
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADII 110 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~ 110 (290)
.++-++.|.+ +|+++|-.+.-. |..| +.+..|.+..++.+..+|.++-+.++.....+ .+|++
T Consensus 53 T~~ev~~l~~----aGadIIAlDaT~---R~Rp---------~~l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D~I 116 (192)
T PF04131_consen 53 TLKEVDALAE----AGADIIALDATD---RPRP---------ETLEELIREIKEKYQLVMADISTLEEAINAAELGFDII 116 (192)
T ss_dssp SHHHHHHHHH----CT-SEEEEE-SS---SS-S---------S-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEE
T ss_pred CHHHHHHHHH----cCCCEEEEecCC---CCCC---------cCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCCEE
Confidence 4566777776 699999887644 3333 24666666667777999999999999988887 68876
Q ss_pred ccc--CC------ccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 111 QIP--AF------LCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 111 kIg--s~------~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
--- +. +--|++|++++.+.+.|||..=+.. |+++..+|.+ .|..-+++
T Consensus 117 ~TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIaEGri~-tpe~a~~al~----~GA~aVVV 172 (192)
T PF04131_consen 117 GTTLSGYTPYTKGDGPDFELVRELVQADVPVIAEGRIH-TPEQAAKALE----LGAHAVVV 172 (192)
T ss_dssp E-TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEEESS---SHHHHHHHHH----TT-SEEEE
T ss_pred EcccccCCCCCCCCCCCHHHHHHHHhCCCcEeecCCCC-CHHHHHHHHh----cCCeEEEE
Confidence 321 00 3467899999999999999998888 9999888765 46544443
No 134
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=94.36 E-value=3.2 Score=37.48 Aligned_cols=172 Identities=15% Similarity=0.147 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHh---hhcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVG---KVAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~---~~~d 108 (290)
-+++|+.+.+ .|++-+...-.+.. .+. ...+..+++.+++.-+.+--=+.+.++++.+. +.++
T Consensus 38 P~~~a~~~~~----~g~~~l~ivDLd~~--------~~~--~~n~~~i~~i~~~~~v~vgGGirs~e~~~~~~~~l~~a~ 103 (221)
T TIGR00734 38 PDDAAKVIEE----IGARFIYIADLDRI--------VGL--GDNFSLLSKLSKRVELIADCGVRSPEDLETLPFTLEFAS 103 (221)
T ss_pred HHHHHHHHHH----cCCCEEEEEEcccc--------cCC--cchHHHHHHHHhhCcEEEcCccCCHHHHHHHHhhhccce
Confidence 4788888875 59887776655521 111 24577777887775333334556666666552 3488
Q ss_pred eecccCCccCCHHHHHHHHhcCCeEEEeCCC---CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHH
Q 022892 109 IIQIPAFLCRQTDLLVAAAKTGKIINIKKGQ---FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWM 185 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~~~~PVilstG~---~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~l 185 (290)
.+-||+..++|.+++++++.. .-+=.+.|. .+-.+......+.+...|. .+++.... +-+. ..-.|+..+..+
T Consensus 104 rvvigT~a~~~p~~l~~~~~v-vslD~~~g~v~~~g~~~~~~~~~~~~~~~g~-~ii~tdI~-~dGt-~~G~d~eli~~i 179 (221)
T TIGR00734 104 RVVVATETLDITELLRECYTV-VSLDFKEKFLDASGLFESLEEVRDFLNSFDY-GLIVLDIH-SVGT-MKGPNLELLTKT 179 (221)
T ss_pred EEeecChhhCCHHHHHHhhhE-EEEEeECCccccccccccHHHHHHHHHhcCC-EEEEEECC-cccc-CCCCCHHHHHHH
Confidence 889999999999999988620 011112232 1111233344455556675 55554433 2221 123577788888
Q ss_pred Hh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 186 RE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 186 k~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.+ ..+||++ + +|.+.. ..+. .....||+|+++=+-+
T Consensus 180 ~~~~~~pvia-~-------------------GGi~s~-ed~~-~l~~~Ga~~vivgsal 216 (221)
T TIGR00734 180 LELSEHPVML-G-------------------GGISGV-EDLE-LLKEMGVSAVLVATAV 216 (221)
T ss_pred HhhCCCCEEE-e-------------------CCCCCH-HHHH-HHHHCCCCEEEEhHHh
Confidence 77 7899987 1 121111 2232 3566799999986543
No 135
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=94.34 E-value=4.7 Score=37.93 Aligned_cols=179 Identities=16% Similarity=0.233 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEEEeecCcccHHHHh---h-h
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIVTDVHETVQCEEVG---K-V 106 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~s~~~d~~~~~~l~---~-~ 106 (290)
.+++++.++++|++.+.+++.-- . +.+.. |.+ +.+.-....+.++++.+ +|++----+-..++.+. + .
T Consensus 25 n~e~~~avi~aAe~~~~PvIl~~-~---~~~~~--~~~-~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~G 97 (282)
T TIGR01859 25 NLEWTQAILEAAEEENSPVIIQV-S---EGAIK--YMG-GYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAG 97 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEc-C---cchhh--ccC-cHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcC
Confidence 47889999999999999877632 2 22221 211 12234456778889999 99887654333444433 3 5
Q ss_pred cceecccCCccC---CHHHH----HHHHhcCCeEEEeCCCC--------------CCHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 107 ADIIQIPAFLCR---QTDLL----VAAAKTGKIINIKKGQF--------------CASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 107 ~d~~kIgs~~~~---n~~lL----~~~a~~~~PVilstG~~--------------~tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
++.+++-..... |..+- +.+-..+.+|-..-|.. -+++|...++ ...|-+. +.+-
T Consensus 98 f~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~---~~tgvD~-Lavs 173 (282)
T TIGR01859 98 FSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFV---KETGVDY-LAAA 173 (282)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHH---HHHCcCE-Eeec
Confidence 788888777763 33322 22344677887666552 1556655544 4346543 4444
Q ss_pred ecCCCC-CCC-CCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 166 RGTMFG-YND-LIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 166 ~gs~~~-y~~-~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
.|+.++ |+. ..+|+..+..+++ .++|++. |+- + |.. ..-.+.++..|++++=|=+.
T Consensus 174 ~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~---hGg-----------S----Gi~---~e~i~~~i~~Gi~kiNv~T~ 232 (282)
T TIGR01859 174 IGTSHGKYKGEPGLDFERLKEIKELTNIPLVL---HGA-----------S----GIP---EEQIKKAIKLGIAKINIDTD 232 (282)
T ss_pred cCccccccCCCCccCHHHHHHHHHHhCCCEEE---ECC-----------C----CCC---HHHHHHHHHcCCCEEEECcH
Confidence 555442 433 4578888888887 7899866 541 1 211 33455678889998755443
No 136
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=94.30 E-value=2.9 Score=38.17 Aligned_cols=168 Identities=18% Similarity=0.178 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhccee
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADII 110 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~ 110 (290)
...+.++++.+ .|.|+++-..-. +.. .+.+..+.+..+++.+|++-+|-++.++- ..+|.+
T Consensus 15 ~~~~~~~~~~~----~gtdai~vGGS~-----------~vt-~~~~~~~v~~ik~~~lPvilfp~~~~~i~---~~aDa~ 75 (223)
T TIGR01768 15 EADEIAKAAAE----SGTDAILIGGSQ-----------GVT-YEKTDTLIEALRRYGLPIILFPSNPTNVS---RDADAL 75 (223)
T ss_pred ccHHHHHHHHh----cCCCEEEEcCCC-----------ccc-HHHHHHHHHHHhccCCCEEEeCCCccccC---cCCCEE
Confidence 34456666655 699999875322 111 34566665556678899999998776654 567877
Q ss_pred cccCCcc-CCHHH--------HHHHHhcCC---e---EEEeCCCC-----------CCHHHHHHHHHHHHH-cCCCcEEE
Q 022892 111 QIPAFLC-RQTDL--------LVAAAKTGK---I---INIKKGQF-----------CASSVMVNSAEKVRL-AGNPNVMV 163 (290)
Q Consensus 111 kIgs~~~-~n~~l--------L~~~a~~~~---P---VilstG~~-----------~tl~e~~~Ave~i~~-~Gn~~i~L 163 (290)
-++|=.- +|... +..+.+.+. | +++--|.. -+.+|+..+...-.. -|- +++-
T Consensus 76 l~~svlNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~-~~vY 154 (223)
T TIGR01768 76 FFPSVLNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGM-PIIY 154 (223)
T ss_pred EEEEeecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHHcCC-cEEE
Confidence 7777432 23222 222333331 2 22322221 144555554433222 143 6888
Q ss_pred EeecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 164 CERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 164 ~~~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
++-|+.++- .+|...+..+++ . ++|+.+- +|.|. ...+..+..+|||++++=+
T Consensus 155 lE~gs~~g~---~v~~e~i~~v~~~~~~~pl~vG--------------------GGIrs--~e~a~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 155 LEAGSGAPE---PVPPELVAEVKKVLDKARLFVG--------------------GGIRS--VEKAREMAEAGADTIVTGN 209 (223)
T ss_pred EEecCCCCC---CcCHHHHHHHHHHcCCCCEEEe--------------------cCCCC--HHHHHHHHHcCCCEEEECc
Confidence 998876432 267788888888 6 8898761 12222 3456666777999998876
Q ss_pred eC
Q 022892 242 HD 243 (290)
Q Consensus 242 H~ 243 (290)
.+
T Consensus 210 ~~ 211 (223)
T TIGR01768 210 VI 211 (223)
T ss_pred HH
Confidence 65
No 137
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=94.30 E-value=2.1 Score=44.44 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=87.0
Q ss_pred hcceecccCCcc--CCHH-HHHHHHhcCCeEE----EeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC
Q 022892 106 VADIIQIPAFLC--RQTD-LLVAAAKTGKIIN----IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD 178 (290)
Q Consensus 106 ~~d~~kIgs~~~--~n~~-lL~~~a~~~~PVi----lstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d 178 (290)
.+|++-|..... .|.. -++++-+.|+-+. +....-.|++.+.+.++.+...|.+.|.|+.-.... .|. .+
T Consensus 109 Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l-~P~-~v- 185 (596)
T PRK14042 109 GVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLL-TPT-VT- 185 (596)
T ss_pred CCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCC-CHH-HH-
Confidence 466666665432 3332 3355556666332 223444599999999999999998878887765531 111 12
Q ss_pred chhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCC---------
Q 022892 179 PRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA--------- 248 (290)
Q Consensus 179 L~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka--------- 248 (290)
..-+..+|+ +++||.+ ++|.. .| +...-+.+|+.+||+ +|+.-+.+=-.
T Consensus 186 ~~lv~alk~~~~ipi~~-H~Hnt---------------~G---la~an~laAieaGad--~iD~ai~glGg~tGn~~tE~ 244 (596)
T PRK14042 186 VELYAGLKQATGLPVHL-HSHST---------------SG---LASICHYEAVLAGCN--HIDTAISSFSGGASHPPTEA 244 (596)
T ss_pred HHHHHHHHhhcCCEEEE-EeCCC---------------CC---cHHHHHHHHHHhCCC--EEEeccccccCCCCcHhHHH
Confidence 145666777 8899999 88874 13 224456788999998 78875543211
Q ss_pred ----C--CCCCCCCChHHHHHHHHHHHHHHH
Q 022892 249 ----P--VDGPTQWPLRNLEELLEELVAIAK 273 (290)
Q Consensus 249 ----~--~D~~~sl~p~~l~~lv~~ir~~~~ 273 (290)
+ ......++++.+.++-+.+++++.
T Consensus 245 lv~~L~~~g~~tgidl~~l~~~~~~~~~vr~ 275 (596)
T PRK14042 245 LVAALTDTPYDTELDLNILLEIDDYFKAVRK 275 (596)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 0 133445666666555555555443
No 138
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=94.28 E-value=3.3 Score=38.55 Aligned_cols=190 Identities=19% Similarity=0.210 Sum_probs=119.6
Q ss_pred hHHhhhcC-CCCeEEEEccCC-------ccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHH
Q 022892 6 ALFNQLKA-AEPFFLLAGPNV-------IESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLK 77 (290)
Q Consensus 6 ~~~~~i~~-~~~~~iIAgpcs-------ien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~ 77 (290)
.++..+.. .+++-+|||.-- |..+-.-.++|+...+ .|+.++-- .|-+..|+| .++
T Consensus 34 ~f~~AL~~~~~~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~----~GAa~iSV-------LTd~~~F~G-----s~e 97 (254)
T COG0134 34 DFYAALKEASGKPAVIAEVKKASPSKGLIREDFDPVEIAKAYEE----GGAAAISV-------LTDPKYFQG-----SFE 97 (254)
T ss_pred cHHHHHHhcCCCceEEEEeecCCCCCCcccccCCHHHHHHHHHH----hCCeEEEE-------ecCccccCC-----CHH
Confidence 46666665 367899997421 2112223456666555 58877642 333444653 467
Q ss_pred HHHHHHHhcCCcEEE--eecCcccHHHHhh-hcceecccCCccCCH---HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVT--DVHETVQCEEVGK-VADIIQIPAFLCRQT---DLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d~~kIgs~~~~n~---~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
.|++.+....+|++. =+.|+.++..... ..|++.+-..-+.+. .|+..+..+|+-+++... +.+|+..|++
T Consensus 98 ~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh---~~eEl~rAl~ 174 (254)
T COG0134 98 DLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVH---NEEELERALK 174 (254)
T ss_pred HHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEEC---CHHHHHHHHh
Confidence 788999999999999 4567888887766 688777666666544 566777789999999987 8999999876
Q ss_pred HHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCC--EEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 022892 152 KVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCP--VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 229 (290)
Q Consensus 152 ~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~p--V~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aA 229 (290)
.|..=|-+=.| ++.+..+|+..-..|.. .+| +++ .+-| + ..+ +.=....
T Consensus 175 ----~ga~iIGINnR----dL~tf~vdl~~t~~la~-~~p~~~~~-IsES-------------G-I~~-----~~dv~~l 225 (254)
T COG0134 175 ----LGAKIIGINNR----DLTTLEVDLETTEKLAP-LIPKDVIL-ISES-------------G-IST-----PEDVRRL 225 (254)
T ss_pred ----CCCCEEEEeCC----CcchheecHHHHHHHHh-hCCCCcEE-EecC-------------C-CCC-----HHHHHHH
Confidence 34433333333 35566788888776654 122 222 2222 0 012 2223344
Q ss_pred HHcCCCEEEEeeeC
Q 022892 230 IAVGVDGVFMEVHD 243 (290)
Q Consensus 230 va~GA~G~~IEkH~ 243 (290)
...||+|++|=..+
T Consensus 226 ~~~ga~a~LVG~sl 239 (254)
T COG0134 226 AKAGADAFLVGEAL 239 (254)
T ss_pred HHcCCCEEEecHHH
Confidence 56799999987665
No 139
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=94.28 E-value=0.51 Score=46.00 Aligned_cols=131 Identities=19% Similarity=0.114 Sum_probs=80.2
Q ss_pred HHHHHH-HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCC
Q 022892 121 DLLVAA-AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTH 198 (290)
Q Consensus 121 ~lL~~~-a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sH 198 (290)
+.++.+ ...+.||++| |.. +.++.+.|++ .|-+-|.+...|... .+.....+..++.+++ .++||++|.-=
T Consensus 226 ~~i~~ir~~~~~pviiK-gV~-~~eda~~a~~----~G~d~I~VSnhGGrq-ld~~~~~~~~L~ei~~~~~~~vi~dGGI 298 (361)
T cd04736 226 QDLRWLRDLWPHKLLVK-GIV-TAEDAKRCIE----LGADGVILSNHGGRQ-LDDAIAPIEALAEIVAATYKPVLIDSGI 298 (361)
T ss_pred HHHHHHHHhCCCCEEEe-cCC-CHHHHHHHHH----CCcCEEEECCCCcCC-CcCCccHHHHHHHHHHHhCCeEEEeCCC
Confidence 345665 4578899999 676 9999988865 577777776666531 1111124567777777 78999886332
Q ss_pred CCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCc
Q 022892 199 SLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGK 278 (290)
Q Consensus 199 s~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~~ 278 (290)
- .| ..+. -|.++||+.++|-+.+--.-+ .++ ..--..-++.|.++++..=..+|-+
T Consensus 299 r----------------~g-----~Dv~-KALaLGA~aV~iGr~~l~~la-~~G-~~gv~~~l~~l~~el~~~m~l~G~~ 354 (361)
T cd04736 299 R----------------RG-----SDIV-KALALGANAVLLGRATLYGLA-ARG-EAGVSEVLRLLKEEIDRTLALIGCP 354 (361)
T ss_pred C----------------CH-----HHHH-HHHHcCCCEEEECHHHHHHHH-hcC-HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2 13 4455 479999999999988721110 010 0011124555666666666667766
Q ss_pred cccc
Q 022892 279 QRMN 282 (290)
Q Consensus 279 ~~~~ 282 (290)
++-+
T Consensus 355 ~i~~ 358 (361)
T cd04736 355 DIAS 358 (361)
T ss_pred CHHH
Confidence 5543
No 140
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=94.27 E-value=4.4 Score=39.29 Aligned_cols=176 Identities=11% Similarity=0.111 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEE-eecCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVT-DVHETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s-~~~d~~~~~~l~~ 105 (290)
+.++.+++|+.|.++ |++.+=... |. .. +..++.++++.+. .+..+.+ ...+.+.++.+.+
T Consensus 21 s~~~k~~ia~~L~~~----Gv~~IEvG~----p~--------~~-~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~ 83 (365)
T TIGR02660 21 TAAEKLAIARALDEA----GVDELEVGI----PA--------MG-EEERAVIRAIVALGLPARLMAWCRARDADIEAAAR 83 (365)
T ss_pred CHHHHHHHHHHHHHc----CCCEEEEeC----CC--------CC-HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHc
Confidence 778889999999884 988775531 11 11 2334444444433 2233332 1135566666555
Q ss_pred -hcceecccCC--ccC-----------CH----HHHHHHHhcCCeEEEeCC--CCCCHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 106 -VADIIQIPAF--LCR-----------QT----DLLVAAAKTGKIINIKKG--QFCASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 106 -~~d~~kIgs~--~~~-----------n~----~lL~~~a~~~~PVilstG--~~~tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
.++.+.|-.. +.. .. +.++++-+.|..|-++-- ...+++.+...++.+...|-..|.|+.
T Consensus 84 ~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~D 163 (365)
T TIGR02660 84 CGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFAD 163 (365)
T ss_pred CCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcc
Confidence 4665544432 210 11 345555567776666533 233678888888888888988777777
Q ss_pred ecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 166 RGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 166 ~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
..... .|.. +- .-+..+++ +++||++ +.|-. ..+...-+.+|+.+||+ .|+.-+.
T Consensus 164 T~G~~-~P~~-v~-~lv~~l~~~~~v~l~~-H~HNd------------------~GlA~ANalaA~~aGa~--~vd~tl~ 219 (365)
T TIGR02660 164 TVGIL-DPFS-TY-ELVRALRQAVDLPLEM-HAHND------------------LGMATANTLAAVRAGAT--HVNTTVN 219 (365)
T ss_pred cCCCC-CHHH-HH-HHHHHHHHhcCCeEEE-EecCC------------------CChHHHHHHHHHHhCCC--EEEEEee
Confidence 65431 2221 21 34566776 7899999 77753 22334557789999998 7776554
No 141
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.27 E-value=0.66 Score=44.33 Aligned_cols=137 Identities=11% Similarity=0.046 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecc-----cCCccCCHHHHHHH-----HhcCCeEEEeCCCCC--
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQI-----PAFLCRQTDLLVAA-----AKTGKIINIKKGQFC-- 141 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kI-----gs~~~~n~~lL~~~-----a~~~~PVilstG~~~-- 141 (290)
+.+.+..+.+.+.|...+-==+ .++.-++ ||..+.+.+++.++ ...++||-+|.-...
T Consensus 67 ~~~~~aA~~~~~~g~d~IDlN~----------GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~ 136 (318)
T TIGR00742 67 NDLAKCAKIAEKRGYDEINLNV----------GCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP 136 (318)
T ss_pred HHHHHHHHHHHhCCCCEEEEEC----------CCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 5566666666665544322111 3555444 78888998776553 235889999995432
Q ss_pred --CHHHHHHHHHHHHHcCCCcEEEEeecCC--CCCCC------CCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccC
Q 022892 142 --ASSVMVNSAEKVRLAGNPNVMVCERGTM--FGYND------LIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLD 209 (290)
Q Consensus 142 --tl~e~~~Ave~i~~~Gn~~i~L~~~gs~--~~y~~------~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~ 209 (290)
+.++....++.+...|- +.+-+|..+. -+|.. ..+|+..+..+++ . ++||+.+.+=.
T Consensus 137 ~~~~~~~~~~~~~l~~~G~-~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~---------- 205 (318)
T TIGR00742 137 LDSYEFLCDFVEIVSGKGC-QNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIK---------- 205 (318)
T ss_pred cchHHHHHHHHHHHHHcCC-CEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcC----------
Confidence 33556666777777775 4556676652 23422 1247778888887 6 89998753322
Q ss_pred CCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 210 GGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 210 ~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
. ..-+..... |+||+||=+-.-
T Consensus 206 -------s-----~~da~~~l~-g~dgVMigRgal 227 (318)
T TIGR00742 206 -------N-----SEQIKQHLS-HVDGVMVGREAY 227 (318)
T ss_pred -------C-----HHHHHHHHh-CCCEEEECHHHH
Confidence 1 122333333 999999987543
No 142
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=94.23 E-value=0.24 Score=45.96 Aligned_cols=76 Identities=17% Similarity=0.085 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHH----HHHHHH-h--cCCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTD----LLVAAA-K--TGKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~----lL~~~a-~--~~~PVilstG~~~tl~ 144 (290)
.+.++.|.++|+++|+.++.|+++.++++.+.+ ..+++-|-.|++..+. .-..+. . ....++-..|.. +.+
T Consensus 144 ~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~iseSGI~-~~~ 222 (254)
T PF00218_consen 144 DDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIVISESGIK-TPE 222 (254)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEEEEESS-S-SHH
T ss_pred HHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccceeEEeecCCC-CHH
Confidence 467899999999999999999999999999877 6999999999884331 111222 1 235677778888 999
Q ss_pred HHHHH
Q 022892 145 VMVNS 149 (290)
Q Consensus 145 e~~~A 149 (290)
++...
T Consensus 223 d~~~l 227 (254)
T PF00218_consen 223 DARRL 227 (254)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88763
No 143
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=94.20 E-value=1.7 Score=45.12 Aligned_cols=182 Identities=20% Similarity=0.266 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEecc---ccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEE--eecCc----
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKS---SFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVT--DVHET---- 97 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~---~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s--~~~d~---- 97 (290)
+.+..+..|..|.+ +|++.+=.. +|+...| | +. ++.|+.|+++.+. -+.++.. ..-+.
T Consensus 24 ~t~d~l~ia~~l~~----~G~~~iE~~ggatfd~~~r-----f--l~-edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~ 91 (592)
T PRK09282 24 RTEDMLPIAEKLDK----VGFWSLEVWGGATFDVCIR-----Y--LN-EDPWERLRKLKKALPNTPLQMLLRGQNLVGYR 91 (592)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEecCCccchhhcc-----c--CC-ccHHHHHHHHHHhCCCCEEEEEeccccccccc
Confidence 45677888888877 498775432 2221111 1 11 3455555555544 2333332 22111
Q ss_pred --------ccHHHHhh-hcceecccCC--ccCCHH-HHHHHHhcCCeEE--Ee--CCCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 98 --------VQCEEVGK-VADIIQIPAF--LCRQTD-LLVAAAKTGKIIN--IK--KGQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 98 --------~~~~~l~~-~~d~~kIgs~--~~~n~~-lL~~~a~~~~PVi--ls--tG~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
..++...+ .+|++.|... +..|.. .++.+-+.|+-|- ++ .+...+++.+.+.++.+...|-+.|
T Consensus 92 ~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I 171 (592)
T PRK09282 92 HYPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSI 171 (592)
T ss_pred cccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 12344444 5777766543 334442 3344556677554 32 2333478999999999998998888
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
.||.-.... .|. .+ ..-+..+|+ +++||++ +.|.. .| +...-+.+|+.+||+ +|.
T Consensus 172 ~i~Dt~G~~-~P~-~~-~~lv~~lk~~~~~pi~~-H~Hnt---------------~G---la~An~laAv~aGad--~vD 227 (592)
T PRK09282 172 CIKDMAGLL-TPY-AA-YELVKALKEEVDLPVQL-HSHCT---------------SG---LAPMTYLKAVEAGVD--IID 227 (592)
T ss_pred EECCcCCCc-CHH-HH-HHHHHHHHHhCCCeEEE-EEcCC---------------CC---cHHHHHHHHHHhCCC--EEE
Confidence 887765531 121 12 245566777 7899999 88874 12 225557789999998 788
Q ss_pred eeCCC
Q 022892 241 VHDDP 245 (290)
Q Consensus 241 kH~t~ 245 (290)
.-+.+
T Consensus 228 ~ai~g 232 (592)
T PRK09282 228 TAISP 232 (592)
T ss_pred eeccc
Confidence 76653
No 144
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=94.18 E-value=1.6 Score=41.08 Aligned_cols=133 Identities=17% Similarity=0.017 Sum_probs=77.8
Q ss_pred CHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEE
Q 022892 119 QTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVA 194 (290)
Q Consensus 119 n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~ 194 (290)
..+.++++.+ ++.||++|.= . +.++.+.+ ...|-.-|.+..+|..-.+ ....++..+..+++ . ++||+.
T Consensus 160 ~~~~i~~l~~~~~~pvivK~v-~-s~~~a~~a----~~~G~d~I~v~~~gG~~~~-~g~~~~~~l~~i~~~~~~~ipvia 232 (299)
T cd02809 160 TWDDLAWLRSQWKGPLILKGI-L-TPEDALRA----VDAGADGIVVSNHGGRQLD-GAPATIDALPEIVAAVGGRIEVLL 232 (299)
T ss_pred CHHHHHHHHHhcCCCEEEeec-C-CHHHHHHH----HHCCCCEEEEcCCCCCCCC-CCcCHHHHHHHHHHHhcCCCeEEE
Confidence 3466777654 5899999943 3 67776554 4467766666655542111 11235667777766 4 499987
Q ss_pred eCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 022892 195 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKV 274 (290)
Q Consensus 195 D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~ 274 (290)
+..=. .| .. +..+.++||+|++|=+-|-..-. ..+. .--.+.++.+.++++..-..
T Consensus 233 ~GGI~----------------~~-----~d-~~kal~lGAd~V~ig~~~l~~~~-~~g~-~~v~~~i~~l~~el~~~m~~ 288 (299)
T cd02809 233 DGGIR----------------RG-----TD-VLKALALGADAVLIGRPFLYGLA-AGGE-AGVAHVLEILRDELERAMAL 288 (299)
T ss_pred eCCCC----------------CH-----HH-HHHHHHcCCCEEEEcHHHHHHHH-hcCH-HHHHHHHHHHHHHHHHHHHH
Confidence 53322 12 23 34567899999999885421100 1111 01133566777777777777
Q ss_pred hCCccccc
Q 022892 275 SKGKQRMN 282 (290)
Q Consensus 275 lg~~~~~~ 282 (290)
+|.+++-+
T Consensus 289 ~G~~~i~~ 296 (299)
T cd02809 289 LGCASLAD 296 (299)
T ss_pred HCCCCHHH
Confidence 77765543
No 145
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=94.15 E-value=0.41 Score=45.88 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCc-------ccHH------
Q 022892 35 MAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHET-------VQCE------ 101 (290)
Q Consensus 35 ~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~-------~~~~------ 101 (290)
-+++|++ .|+|+||+=-|.. |-.++.--+ .. ..-++.+-+.|++.||||+-|+... .+.+
T Consensus 111 s~~rike----~GadavK~Llyy~-pD~~~ein~-~k-~a~vervg~ec~a~dipf~lE~ltYd~~~~~~~~~~yak~kP 183 (325)
T TIGR01232 111 SAKRLKE----QGANAVKFLLYYD-VDDAEEINI-QK-KAYIERIGSECVAEDIPFFLEVLTYDDNIPDNGSVEFAKVKP 183 (325)
T ss_pred cHHHHHH----hCCCeEEEEEEeC-CCCChHHHH-HH-HHHHHHHHHHHHHCCCCeEEEEeccCCCCCCCCcHHHHHhCh
Confidence 3788887 4999999866552 222221000 00 2446677788999999999997654 2232
Q ss_pred --------HHhh---hcceecccC---------Cc---c--CCH---HHHHH-HHhcCCe-EEEeCCCCCCHHHHHHHHH
Q 022892 102 --------EVGK---VADIIQIPA---------FL---C--RQT---DLLVA-AAKTGKI-INIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 102 --------~l~~---~~d~~kIgs---------~~---~--~n~---~lL~~-~a~~~~P-VilstG~~~tl~e~~~Ave 151 (290)
.+.+ .+|++||-. +. . +.. ..+++ ...+++| |+||.|.+ .+.....++
T Consensus 184 ~~V~~a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~eq~~~~~~P~i~LSaGV~--~~~F~~~l~ 261 (325)
T TIGR01232 184 RKVNEAMKLFSEPRFNVDVLKVEVPVNVKYVEGFAEGEVVYTKEEAAQHFKDQDAATHLPYIYLSAGVS--AELFQETLK 261 (325)
T ss_pred HHHHHHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhhccCCCEEEEcCCCC--HHHHHHHHH
Confidence 2333 488999872 11 1 111 12233 2346787 78888866 889999999
Q ss_pred HHHHcCCC-cEEEEeecC
Q 022892 152 KVRLAGNP-NVMVCERGT 168 (290)
Q Consensus 152 ~i~~~Gn~-~i~L~~~gs 168 (290)
.-.+.|.. +=+||=|-+
T Consensus 262 ~A~~aGa~fsGvL~GRAt 279 (325)
T TIGR01232 262 FAHEAGAKFNGVLCGRAT 279 (325)
T ss_pred HHHHcCCCcceEEeehhh
Confidence 88887765 567776655
No 146
>PRK06739 pyruvate kinase; Validated
Probab=94.11 E-value=1.2 Score=43.38 Aligned_cols=131 Identities=13% Similarity=0.062 Sum_probs=92.6
Q ss_pred HHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC---CcEEEeecCcccHHHHhh---hccee
Q 022892 37 KHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD---IPIVTDVHETVQCEEVGK---VADII 110 (290)
Q Consensus 37 k~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G---i~~~s~~~d~~~~~~l~~---~~d~~ 110 (290)
++-++.+.+.|+|.|...+-.. .+.+..+++++.+.| +++++-+-..+.++-+.+ ..|.+
T Consensus 168 ~~di~f~~~~~vD~ia~SFVr~--------------~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDgi 233 (352)
T PRK06739 168 KKDIQFLLEEDVDFIACSFVRK--------------PSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGI 233 (352)
T ss_pred HHHHHHHHHcCCCEEEECCCCC--------------HHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCEE
Confidence 3345566778999887643221 477889999998874 789999988888877766 59999
Q ss_pred cccCCcc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Q 022892 111 QIPAFLC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFG 171 (290)
Q Consensus 111 kIgs~~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~ 171 (290)
-|+=+++ .|-.+++.+-..+||||+.|-|- .|-.|+-..+..+. .|-+-++|-.-+..-.
T Consensus 234 mVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~-dG~D~vMLS~ETA~G~ 312 (352)
T PRK06739 234 MIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVL-DGTNAVMLSAESASGE 312 (352)
T ss_pred EEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHH-hCCcEEEEcccccCCC
Confidence 9999887 34456677778899999888763 35577777777665 4666677754444323
Q ss_pred CCCCCCCchhHHHHHh
Q 022892 172 YNDLIVDPRNLEWMRE 187 (290)
Q Consensus 172 y~~~~~dL~~i~~lk~ 187 (290)
||. .++.+|++
T Consensus 313 yPv-----eaV~~m~~ 323 (352)
T PRK06739 313 HPI-----ESVSTLRL 323 (352)
T ss_pred CHH-----HHHHHHHH
Confidence 774 46666654
No 147
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=94.10 E-value=4.3 Score=38.04 Aligned_cols=180 Identities=12% Similarity=0.039 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc----CCcEEEeecCcccHHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY----DIPIVTDVHETVQCEEV 103 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~----Gi~~~s~~~d~~~~~~l 103 (290)
+.++-+++|++|.+. +|++.+=..+|- .++.. .+.++.+.+..+.. ++.+++-+-....++.+
T Consensus 17 s~e~K~~i~~~L~~~---~Gv~~IEvg~~~----~s~~e------~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~A 83 (280)
T cd07945 17 SPSEKLNIAKILLQE---LKVDRIEVASAR----VSEGE------FEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSVDWI 83 (280)
T ss_pred CHHHHHHHHHHHHHH---hCCCEEEecCCC----CCHHH------HHHHHHHHHHhhhhccccCcEEEEecCcHHHHHHH
Confidence 678889999987542 599888766542 11110 12333333322221 45555444444556665
Q ss_pred hh-hcceecccCC--cc--------CCH-------HHHHHHHhcCCeEEEeCCCC-----CCHHHHHHHHHHHHHcCCCc
Q 022892 104 GK-VADIIQIPAF--LC--------RQT-------DLLVAAAKTGKIINIKKGQF-----CASSVMVNSAEKVRLAGNPN 160 (290)
Q Consensus 104 ~~-~~d~~kIgs~--~~--------~n~-------~lL~~~a~~~~PVilstG~~-----~tl~e~~~Ave~i~~~Gn~~ 160 (290)
.+ .++.+.|... +. +-- +.++.+...|..|.+.-..+ .+++.+.+.++.+...|-..
T Consensus 84 ~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~ 163 (280)
T cd07945 84 KSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKR 163 (280)
T ss_pred HHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCE
Confidence 55 4676665531 11 111 23455566677666555432 27999999999999899888
Q ss_pred EEEEeecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEE
Q 022892 161 VMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVF 238 (290)
Q Consensus 161 i~L~~~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~ 238 (290)
|.|+..... ..|.. +. .-+..+++ + ++|+.+ +.|-. +.+...-+.+|+..||+ +
T Consensus 164 i~l~DT~G~-~~P~~-v~-~l~~~l~~~~~~~~i~~-H~Hnd------------------~Gla~AN~laA~~aGa~--~ 219 (280)
T cd07945 164 IMLPDTLGI-LSPFE-TY-TYISDMVKRYPNLHFDF-HAHND------------------YDLAVANVLAAVKAGIK--G 219 (280)
T ss_pred EEecCCCCC-CCHHH-HH-HHHHHHHhhCCCCeEEE-EeCCC------------------CCHHHHHHHHHHHhCCC--E
Confidence 888877653 12221 21 44556666 4 588998 77753 22334456788999998 7
Q ss_pred EeeeCC
Q 022892 239 MEVHDD 244 (290)
Q Consensus 239 IEkH~t 244 (290)
|+.-+.
T Consensus 220 vd~s~~ 225 (280)
T cd07945 220 LHTTVN 225 (280)
T ss_pred EEEecc
Confidence 887664
No 148
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.09 E-value=0.92 Score=45.30 Aligned_cols=105 Identities=18% Similarity=0.206 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE-eecCcccHHHHhh-h
Q 022892 30 EHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT-DVHETVQCEEVGK-V 106 (290)
Q Consensus 30 ~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s-~~~d~~~~~~l~~-~ 106 (290)
+..++.++.|++ +|+++|....-. |.. ...++.++++.+++ +++++. ++.+++.+..+.+ .
T Consensus 223 ~~~~~r~~~L~~----aG~d~I~vd~a~-----------g~~-~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aG 286 (450)
T TIGR01302 223 EFDKERAEALVK----AGVDVIVIDSSH-----------GHS-IYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAG 286 (450)
T ss_pred hhHHHHHHHHHH----hCCCEEEEECCC-----------CcH-hHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhC
Confidence 467888888888 499998765322 111 34566677777674 799877 9999999999988 7
Q ss_pred cceeccc--CCc--c---------CCHHHHHHH----HhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 107 ADIIQIP--AFL--C---------RQTDLLVAA----AKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 107 ~d~~kIg--s~~--~---------~n~~lL~~~----a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
+|+++|| ++. . .+...+.++ .+.+.||+-.-|.. +..++..|..
T Consensus 287 ad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~-~~~di~kAla 347 (450)
T TIGR01302 287 ADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIR-YSGDIVKALA 347 (450)
T ss_pred CCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCC-CHHHHHHHHH
Confidence 9999976 331 1 133343333 34689999999999 9999998865
No 149
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=94.07 E-value=5 Score=37.26 Aligned_cols=210 Identities=19% Similarity=0.222 Sum_probs=113.1
Q ss_pred EEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcc--------c-----CCCCChhHHHHHHHHHH-
Q 022892 18 FLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSK--------S-----FRGPGMVEGLKILEKVK- 83 (290)
Q Consensus 18 ~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~--------~-----~~g~~~~~~l~~L~~~~- 83 (290)
|+.||=- |.+..++.++.|.+ .|+|++=.+. |.+.|. + -.|..+.+.++++++++
T Consensus 17 yi~aG~P---~~~~~~~~~~~l~~----~Gad~iElGi----PfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~ 85 (258)
T PRK13111 17 YITAGDP---DLETSLEIIKALVE----AGADIIELGI----PFSDPVADGPVIQAASLRALAAGVTLADVFELVREIRE 85 (258)
T ss_pred EEeCCCC---CHHHHHHHHHHHHH----CCCCEEEECC----CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 5555532 56778888888877 5999987764 333332 0 02333456788899988
Q ss_pred HhcCCcEE-EeecCc---cc----HHHHhh-hcceecccCCcc-CCHHHHHHHHhcCC-eEEEeCCCCCCHHHHHHHHHH
Q 022892 84 IAYDIPIV-TDVHET---VQ----CEEVGK-VADIIQIPAFLC-RQTDLLVAAAKTGK-IINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 84 ~~~Gi~~~-s~~~d~---~~----~~~l~~-~~d~~kIgs~~~-~n~~lL~~~a~~~~-PVilstG~~~tl~e~~~Ave~ 152 (290)
+...+|++ -+-+++ .. ++.+.+ .+|-+-|+---. .-.++++.+.+.|. +|.|-+..+ +.+.++..++.
T Consensus 86 ~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t-~~eri~~i~~~ 164 (258)
T PRK13111 86 KDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTT-TDERLKKIASH 164 (258)
T ss_pred cCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHh
Confidence 55788843 344443 12 333334 477676752222 22245566667785 566577766 66666654432
Q ss_pred HHHcCCCcEEEEeecCCCCCCC-CCCCc-hhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 022892 153 VRLAGNPNVMVCERGTMFGYND-LIVDP-RNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 229 (290)
Q Consensus 153 i~~~Gn~~i~L~~~gs~~~y~~-~~~dL-~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aA 229 (290)
+.| -|-+..+-...+... ...++ ..+..+|+ +++||++-. ++ + . +.-+..+
T Consensus 165 --s~g--fIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGf--GI--------------~-~-----~e~v~~~ 218 (258)
T PRK13111 165 --ASG--FVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGF--GI--------------S-T-----PEQAAAI 218 (258)
T ss_pred --CCC--cEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEc--cc--------------C-C-----HHHHHHH
Confidence 222 233322211112211 11222 46777888 789987611 11 0 1 2333344
Q ss_pred HHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 230 IAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 230 va~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
.. +|||+++=+++. +.+.+. +-..++++++++.++.
T Consensus 219 ~~-~ADGviVGSaiv--~~~~~~--~~~~~~~~~~~~~l~~ 254 (258)
T PRK13111 219 AA-VADGVIVGSALV--KIIEEN--PEALEALAAFVKELKA 254 (258)
T ss_pred HH-hCCEEEEcHHHH--HHHHhc--chHHHHHHHHHHHHHH
Confidence 44 499999999874 111111 1235678888877764
No 150
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=94.04 E-value=0.33 Score=46.04 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh---cc--eecccCCc-cCCHHHHHHHHhc--CCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV---AD--IIQIPAFL-CRQTDLLVAAAKT--GKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~---~d--~~kIgs~~-~~n~~lL~~~a~~--~~PVilstG~~~tl~ 144 (290)
.+-+....++++++.|..+=+||++++.+-.... +. +.-||-.. ++|...|+..-.. .--++||-++.+|+.
T Consensus 136 delid~y~~li~~YPIvsIEDpf~edD~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvt 215 (295)
T PF00113_consen 136 DELIDYYKDLIKKYPIVSIEDPFDEDDWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVT 215 (295)
T ss_dssp HHHHHHHHHHHHHS-EEEEESSS-TT-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHH
T ss_pred HHHHHHHHHHHHhcCeEEEEccccccchHHHHHHHHhhhcceeeecccccccchhhhhccchhhhccchhhhhhhhHHHH
Confidence 3567789999999999888899999988766552 33 45555543 3899988886443 337999999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecC
Q 022892 145 VMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
|..+|++..++.| -.+++.||..
T Consensus 216 e~lea~~~a~~~g-~~~vvS~rsg 238 (295)
T PF00113_consen 216 ETLEAVKLAKSAG-WGVVVSHRSG 238 (295)
T ss_dssp HHHHHHHHHHHTT--EEEEE--SS
T ss_pred HHHHHHHHHHHCC-ceeeccCCCC
Confidence 9999999998876 3688888865
No 151
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=93.94 E-value=4.6 Score=37.53 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCeEEEeCCC------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cC-CCE
Q 022892 121 DLLVAAAKTGKIINIKKGQ------FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN-CPV 192 (290)
Q Consensus 121 ~lL~~~a~~~~PVilstG~------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~-~pV 192 (290)
++++.+-+.|..|.+. .+ ..+++.+.+.++.+...|...|.|+..... ..|.. + .+-+..+++ ++ +|+
T Consensus 123 ~~i~~ak~~G~~v~~~-~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~-~~P~~-v-~~lv~~l~~~~~~~~l 198 (273)
T cd07941 123 DSVAYLKSHGREVIFD-AEHFFDGYKANPEYALATLKAAAEAGADWLVLCDTNGG-TLPHE-I-AEIVKEVRERLPGVPL 198 (273)
T ss_pred HHHHHHHHcCCeEEEe-EEeccccCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-CCHHH-H-HHHHHHHHHhCCCCee
Confidence 3455566678888773 22 236777788888888889888877776553 12221 2 145566776 55 889
Q ss_pred EEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 193 VADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 193 ~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
++ +.|-. +.+...-+.+|+..||+ .|+.-+.
T Consensus 199 ~~-H~Hnd------------------~Gla~An~laA~~aGa~--~id~s~~ 229 (273)
T cd07941 199 GI-HAHND------------------SGLAVANSLAAVEAGAT--QVQGTIN 229 (273)
T ss_pred EE-EecCC------------------CCcHHHHHHHHHHcCCC--EEEEecc
Confidence 99 77863 22335557788999998 7787653
No 152
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=93.89 E-value=2.4 Score=39.53 Aligned_cols=181 Identities=15% Similarity=0.082 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-h
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-V 106 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~ 106 (290)
+.++-.++|+.|.++ |++.|=..+|-. |...|. +.-.+ ..++....-.+..+.+=+.....++...+ .
T Consensus 18 s~e~K~~i~~~L~~~----Gv~~IEvGs~~~-~~~~p~----~~d~~--~~~~~l~~~~~~~~~~~~~~~~dv~~A~~~g 86 (274)
T cd07938 18 PTEDKIELIDALSAA----GLRRIEVTSFVS-PKWVPQ----MADAE--EVLAGLPRRPGVRYSALVPNLRGAERALAAG 86 (274)
T ss_pred CHHHHHHHHHHHHHc----CCCEEEeCCCCC-cccccc----cCCHH--HHHhhcccCCCCEEEEECCCHHHHHHHHHcC
Confidence 678889999999984 999988877642 332221 11011 11222222235555554556667777666 5
Q ss_pred cceeccc--CCcc--------C---C----HHHHHHHHhcCCeEEE--e-------CCCCCCHHHHHHHHHHHHHcCCCc
Q 022892 107 ADIIQIP--AFLC--------R---Q----TDLLVAAAKTGKIINI--K-------KGQFCASSVMVNSAEKVRLAGNPN 160 (290)
Q Consensus 107 ~d~~kIg--s~~~--------~---n----~~lL~~~a~~~~PVil--s-------tG~~~tl~e~~~Ave~i~~~Gn~~ 160 (290)
++++.+. +.+. + + .+.++.+-+.|+-|.+ + .|.. +++.+.+.++.+...|-+.
T Consensus 87 ~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~-~~~~~~~~~~~~~~~Ga~~ 165 (274)
T cd07938 87 VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV-PPERVAEVAERLLDLGCDE 165 (274)
T ss_pred cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC-CHHHHHHHHHHHHHcCCCE
Confidence 6665443 2221 1 0 1224455566776642 2 1233 7899999999888889888
Q ss_pred EEEEeecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEE
Q 022892 161 VMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVF 238 (290)
Q Consensus 161 i~L~~~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~ 238 (290)
|.|+...... .|.. + .+-+..+++ + ++||++ +.|-. +.+...-+.+|+.+||+ +
T Consensus 166 i~l~DT~G~~-~P~~-v-~~lv~~l~~~~~~~~i~~-H~Hnd------------------~GlA~AN~laA~~aGa~--~ 221 (274)
T cd07938 166 ISLGDTIGVA-TPAQ-V-RRLLEAVLERFPDEKLAL-HFHDT------------------RGQALANILAALEAGVR--R 221 (274)
T ss_pred EEECCCCCcc-CHHH-H-HHHHHHHHHHCCCCeEEE-EECCC------------------CChHHHHHHHHHHhCCC--E
Confidence 8887766531 2221 1 145666776 5 589999 77763 12335557789999998 7
Q ss_pred EeeeCC
Q 022892 239 MEVHDD 244 (290)
Q Consensus 239 IEkH~t 244 (290)
|+.-+.
T Consensus 222 id~t~~ 227 (274)
T cd07938 222 FDSSVG 227 (274)
T ss_pred EEEecc
Confidence 876654
No 153
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=93.78 E-value=3.4 Score=39.05 Aligned_cols=170 Identities=15% Similarity=0.149 Sum_probs=98.1
Q ss_pred HHHHHcCCCEEecc-ccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe--ecCcccHHHHhh-hcceecccCCc
Q 022892 41 SISTKVGLPLVFKS-SFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD--VHETVQCEEVGK-VADIIQIPAFL 116 (290)
Q Consensus 41 ~~a~~~G~~~V~~~-~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~d~~kIgs~~ 116 (290)
++|+++|+-+||-= ..-.++|...+--+ -.+.+.+++..+...||++.= .-...+++.|.+ .+|++- ++.-
T Consensus 22 ~~ae~aga~~v~~~~~~~~~~~~~~~v~R----~~~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiID-aT~r 96 (283)
T cd04727 22 RIAEEAGAVAVMALERVPADIRAAGGVAR----MADPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMID-ESEV 96 (283)
T ss_pred HHHHHcCceEEeeeccCchhhhhcCCeee----cCCHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEe-ccCC
Confidence 56778998887751 11111233222111 245667777777889999873 333667777777 699983 2222
Q ss_pred cCC-HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC--------------------CCCCC-
Q 022892 117 CRQ-TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM--------------------FGYND- 174 (290)
Q Consensus 117 ~~n-~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~--------------------~~y~~- 174 (290)
.+- -+++..+-.. .-+.|-.+-+ |++|.++|++ .|-.=|-=..+|.. ++|+.
T Consensus 97 ~rP~~~~~~~iK~~-~~~l~MAD~s-tleEal~a~~----~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~ 170 (283)
T cd04727 97 LTPADEEHHIDKHK-FKVPFVCGAR-NLGEALRRIS----EGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEE 170 (283)
T ss_pred CCcHHHHHHHHHHH-cCCcEEccCC-CHHHHHHHHH----CCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 222 2355555332 2456667777 9999998875 34322211111110 11211
Q ss_pred --------CCCCchhHHHHHh-cCCCEE--EeCC-CCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 175 --------LIVDPRNLEWMRE-ANCPVV--ADVT-HSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 175 --------~~~dL~~i~~lk~-~~~pV~--~D~s-Hs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
...++..+..+++ .++||+ .... |+ +.-+..+..+||+|+++=+-
T Consensus 171 t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~T-----------------------pena~~v~e~GAdgVaVGSA 227 (283)
T cd04727 171 ELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVAT-----------------------PADAALMMQLGADGVFVGSG 227 (283)
T ss_pred HHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCC-----------------------HHHHHHHHHcCCCEEEEcHH
Confidence 2357777888877 789996 3111 12 45566678899999999887
Q ss_pred CC
Q 022892 243 DD 244 (290)
Q Consensus 243 ~t 244 (290)
++
T Consensus 228 I~ 229 (283)
T cd04727 228 IF 229 (283)
T ss_pred hh
Confidence 75
No 154
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=93.77 E-value=7.6 Score=38.34 Aligned_cols=179 Identities=18% Similarity=0.122 Sum_probs=102.0
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-ee
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT-DV 94 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s-~~ 94 (290)
+-+++|--.. +.+..++.++++.+ .|++++... + +.. ...+.+.++++++.++.+++. +.
T Consensus 4 ~~l~~alD~~--~~~~~~~~~~~~~~----~Gv~~ie~g-~-------p~~-----~~~~~~~i~~l~~~~~~~~ii~D~ 64 (430)
T PRK07028 4 PILQVALDLL--ELDRAVEIAKEAVA----GGADWIEAG-T-------PLI-----KSEGMNAIRTLRKNFPDHTIVADM 64 (430)
T ss_pred ceEEEEeccC--CHHHHHHHHHHHHh----cCCcEEEeC-C-------HHH-----HHhhHHHHHHHHHHCCCCEEEEEe
Confidence 3456665555 77778888877766 599988542 1 110 134677788888887754443 31
Q ss_pred cC----cccHHHHhh-hcceecccCC-ccCC-HHHHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 95 HE----TVQCEEVGK-VADIIQIPAF-LCRQ-TDLLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 95 ~d----~~~~~~l~~-~~d~~kIgs~-~~~n-~~lL~~~a~~~~PVils--tG~~~tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
.- ...++.+.+ .++.+-+.+. +..+ ...++++-+.|+++++- +... +.+.+..+ .+.|-+.+.+ +
T Consensus 65 kl~d~g~~~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~s~~t-~~e~~~~a----~~~GaD~I~~-~ 138 (430)
T PRK07028 65 KTMDTGAIEVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLINVPD-PVKRAVEL----EELGVDYINV-H 138 (430)
T ss_pred eeccchHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEecCCCC-HHHHHHHH----HhcCCCEEEE-E
Confidence 11 125666656 5888876433 2112 24666777789998872 2212 24444333 3457666644 4
Q ss_pred ecCC-CCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 166 RGTM-FGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 166 ~gs~-~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.|.. ..++. .-+..+..+++ +++||..+.--+ ..-+..+++.||+|+++=+-+
T Consensus 139 pg~~~~~~~~--~~~~~l~~l~~~~~iPI~a~GGI~-----------------------~~n~~~~l~aGAdgv~vGsaI 193 (430)
T PRK07028 139 VGIDQQMLGK--DPLELLKEVSEEVSIPIAVAGGLD-----------------------AETAAKAVAAGADIVIVGGNI 193 (430)
T ss_pred eccchhhcCC--ChHHHHHHHHhhCCCcEEEECCCC-----------------------HHHHHHHHHcCCCEEEEChHH
Confidence 4321 01111 12345666666 689998743211 334556788999999888776
Q ss_pred C
Q 022892 244 D 244 (290)
Q Consensus 244 t 244 (290)
.
T Consensus 194 ~ 194 (430)
T PRK07028 194 I 194 (430)
T ss_pred c
Confidence 4
No 155
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=93.69 E-value=0.86 Score=43.71 Aligned_cols=125 Identities=18% Similarity=0.142 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcc----------------
Q 022892 35 MAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETV---------------- 98 (290)
Q Consensus 35 ~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~---------------- 98 (290)
-+++|++. |+|+||+=-|.. |-..+.--+ .. ..-++.+-+.|++.||||+-|+....
T Consensus 110 S~~rike~----GadavK~Llyy~-pD~~~~in~-~k-~a~vervg~eC~a~dipf~lE~ltY~~~~~d~~~~~yak~kP 182 (324)
T PRK12399 110 SAKRIKEE----GADAVKFLLYYD-VDEPDEINE-QK-KAYIERIGSECVAEDIPFFLEILTYDEKIADNGSVEYAKVKP 182 (324)
T ss_pred hHHHHHHh----CCCeEEEEEEEC-CCCCHHHHH-HH-HHHHHHHHHHHHHCCCCeEEEEeeccCcccccccHHHHhhCh
Confidence 47888874 999999866552 221111000 00 23456677789999999999865422
Q ss_pred -----cHHHHhh---hcceecc----------c--CCcc--CCHH----HHHHHHhcCCe-EEEeCCCCCCHHHHHHHHH
Q 022892 99 -----QCEEVGK---VADIIQI----------P--AFLC--RQTD----LLVAAAKTGKI-INIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 99 -----~~~~l~~---~~d~~kI----------g--s~~~--~n~~----lL~~~a~~~~P-VilstG~~~tl~e~~~Ave 151 (290)
.+..+.+ .+|++|| | ..+. +.-+ +-++...+++| |+||.|.+ .+.....++
T Consensus 183 ~~V~~a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~~~~~~~~~P~i~LSaGV~--~~~F~~~l~ 260 (324)
T PRK12399 183 HKVNEAMKVFSKPRFGVDVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKEQDAATHLPYIYLSAGVS--AELFQETLV 260 (324)
T ss_pred HHHHHHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhhccCCCEEEEcCCCC--HHHHHHHHH
Confidence 2334433 4999999 3 2211 2111 22223346887 78888866 889999999
Q ss_pred HHHHcCCC-cEEEEeecC
Q 022892 152 KVRLAGNP-NVMVCERGT 168 (290)
Q Consensus 152 ~i~~~Gn~-~i~L~~~gs 168 (290)
.-...|.. +=+||=|-+
T Consensus 261 ~A~~aGa~fsGvL~GRAt 278 (324)
T PRK12399 261 FAHEAGAKFNGVLCGRAT 278 (324)
T ss_pred HHHHcCCCcceEEeehhh
Confidence 88887765 567776655
No 156
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=93.61 E-value=6.2 Score=36.76 Aligned_cols=223 Identities=14% Similarity=0.159 Sum_probs=122.0
Q ss_pred CCchhhHHhhhcCCCC---eEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcc--------c---
Q 022892 1 MDPSTALFNQLKAAEP---FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSK--------S--- 66 (290)
Q Consensus 1 ~~~~~~~~~~i~~~~~---~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~--------~--- 66 (290)
|..-+..|..+. +++ +|+.||=- |.+..++.++.|.+ .|+|++=.+. |.+.|- +
T Consensus 1 M~~i~~~f~~~~-~~~ali~yi~aG~P---~~~~~~~~~~~l~~----~Gad~iElGi----PfSDP~aDGpvIq~a~~r 68 (263)
T CHL00200 1 MNTISNVFEKLD-KQCALIPFITAGDP---DIVITKKALKILDK----KGADIIELGI----PYSDPLADGPIIQEASNR 68 (263)
T ss_pred CchHHHHHHHhc-CCCcEEEEEeCCCC---CHHHHHHHHHHHHH----CCCCEEEECC----CCCCCCccCHHHHHHHHH
Confidence 333345566542 222 35555532 56778888888887 5999987764 222222 0
Q ss_pred --CCCCChhHHHHHHHHHHHhcCCc-EEEeecCcc-------cHHHHhh-hcceecccCCccCCH-HHHHHHHhcCC-eE
Q 022892 67 --FRGPGMVEGLKILEKVKIAYDIP-IVTDVHETV-------QCEEVGK-VADIIQIPAFLCRQT-DLLVAAAKTGK-II 133 (290)
Q Consensus 67 --~~g~~~~~~l~~L~~~~~~~Gi~-~~s~~~d~~-------~~~~l~~-~~d~~kIgs~~~~n~-~lL~~~a~~~~-PV 133 (290)
-.|..+...|++++++.++..+| ++-+-+++- -++.+.+ .+|-+-|+---.... ++++.+.+.|+ ||
T Consensus 69 AL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I 148 (263)
T CHL00200 69 ALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELI 148 (263)
T ss_pred HHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEE
Confidence 02333456788899988888888 444555541 1222333 477777776555433 45566666676 66
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC--CCC--Cc-hhHHHHHh-cCCCEEEeCCCCCCCCCCCc
Q 022892 134 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND--LIV--DP-RNLEWMRE-ANCPVVADVTHSLQQPAGKK 207 (290)
Q Consensus 134 ilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~--~~~--dL-~~i~~lk~-~~~pV~~D~sHs~~~~~~~~ 207 (290)
.+=+..+ +.+.+...++. +.| .+. |.|..+..- ..+ ++ ..+..+|+ +++||.++ -++
T Consensus 149 ~lv~PtT-~~eri~~i~~~--a~g---FIY--~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vG--FGI------- 211 (263)
T CHL00200 149 LLIAPTS-SKSRIQKIARA--APG---CIY--LVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILG--FGI------- 211 (263)
T ss_pred EEECCCC-CHHHHHHHHHh--CCC---cEE--EEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEE--CCc-------
Confidence 6666665 66666655442 122 233 222222111 111 11 34555677 78898663 222
Q ss_pred cCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC--CCCCCCCCCCCCChHHHHHHHHHHH
Q 022892 208 LDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD--PLNAPVDGPTQWPLRNLEELLEELV 269 (290)
Q Consensus 208 ~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t--~dka~~D~~~sl~p~~l~~lv~~ir 269 (290)
.. +..+......||||+|+=+.+- .++ +...-..++++++++.++
T Consensus 212 --------~~-----~e~~~~~~~~GADGvVVGSalv~~i~~----~~~~~~~~~~~~~~~~~~ 258 (263)
T CHL00200 212 --------ST-----SEQIKQIKGWNINGIVIGSACVQILLG----SSPEKGLDQLSEFCKVAK 258 (263)
T ss_pred --------CC-----HHHHHHHHhcCCCEEEECHHHHHHHHh----cChhhHHHHHHHHHHHHH
Confidence 11 4456667788999999998872 111 100112356666766665
No 157
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.53 E-value=0.4 Score=46.39 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCCcEEEeecCcccHHHHhh--hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 022892 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGK--VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~--~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~ 152 (290)
.+...++.+..+++| ++--..+.+.|.+ .+|++.|++-+.++.+..-.+...+|+|++.+.+++|.+|.+..++.
T Consensus 42 s~~~A~~fAq~~~~~---~~k~y~syEeLakd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~ivea 118 (351)
T KOG2741|consen 42 SLERAKEFAQRHNIP---NPKAYGSYEELAKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEA 118 (351)
T ss_pred cHHHHHHHHHhcCCC---CCccccCHHHHhcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHH
Confidence 466778889999998 4444456677765 69999999999999998888899999999999999999999999998
Q ss_pred HHHcCCCcEEEEee
Q 022892 153 VRLAGNPNVMVCER 166 (290)
Q Consensus 153 i~~~Gn~~i~L~~~ 166 (290)
.+..| +.+++-
T Consensus 119 A~~rg---v~~meg 129 (351)
T KOG2741|consen 119 AEARG---VFFMEG 129 (351)
T ss_pred HHHcC---cEEEee
Confidence 88766 444443
No 158
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.50 E-value=1.6 Score=41.18 Aligned_cols=104 Identities=15% Similarity=0.211 Sum_probs=62.9
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD 93 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~ 93 (290)
+++.-||||.++- |.+.++++|++..+ +|+|++.-. .||.|+ +.-+.-+.+.+.++++.++|++
T Consensus 71 ~grvpviaG~g~~-~t~eai~lak~a~~----~Gad~il~v--------~PyY~k-~~~~gl~~hf~~ia~a~~lPvi-- 134 (299)
T COG0329 71 GGRVPVIAGVGSN-STAEAIELAKHAEK----LGADGILVV--------PPYYNK-PSQEGLYAHFKAIAEAVDLPVI-- 134 (299)
T ss_pred CCCCcEEEecCCC-cHHHHHHHHHHHHh----cCCCEEEEe--------CCCCcC-CChHHHHHHHHHHHHhcCCCEE--
Confidence 4566699999984 56666666666555 699987653 222222 2213456678888888888865
Q ss_pred ecCcccHHHHhhhcceecccCCccCC--HHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 022892 94 VHETVQCEEVGKVADIIQIPAFLCRQ--TDLLVAAAKTGKIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 94 ~~d~~~~~~l~~~~d~~kIgs~~~~n--~~lL~~~a~~~~PVilstG~~~tl~e~~~A 149 (290)
+|.||++.-.+ .+++..+++.+.-|.+|-... +++.+...
T Consensus 135 ---------------lYN~P~~tg~~l~~e~i~~la~~~nivgiKd~~g-d~~~~~~~ 176 (299)
T COG0329 135 ---------------LYNIPSRTGVDLSPETIARLAEHPNIVGVKDSSG-DLDRLEEI 176 (299)
T ss_pred ---------------EEeCccccCCCCCHHHHHHHhcCCCEEEEEeCCc-CHHHHHHH
Confidence 35555554432 245555555555666666655 55555543
No 159
>PRK06801 hypothetical protein; Provisional
Probab=93.49 E-value=6.9 Score=36.96 Aligned_cols=178 Identities=13% Similarity=0.142 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh----hc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK----VA 107 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~----~~ 107 (290)
.+++++.++++|++.+.+++.- ... -+. .| .++..-...++.++++..+||+----+-...+.+.+ .+
T Consensus 27 n~e~~~avi~AAe~~~~PvIl~-~~~---~~~--~~--~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~Gf 98 (286)
T PRK06801 27 DSHFLRALFAAAKQERSPFIIN-IAE---VHF--KY--ISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGF 98 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEE-eCc---chh--hc--CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCC
Confidence 5789999999999999987653 222 111 12 233455667888889999999886666656666554 47
Q ss_pred ceecccCCccC---CHHHHHH----HHhcCCeEEEeCCCCC--------------CHHHHHHHHHHHHHcCCCcEEEEee
Q 022892 108 DIIQIPAFLCR---QTDLLVA----AAKTGKIINIKKGQFC--------------ASSVMVNSAEKVRLAGNPNVMVCER 166 (290)
Q Consensus 108 d~~kIgs~~~~---n~~lL~~----~a~~~~PVilstG~~~--------------tl~e~~~Ave~i~~~Gn~~i~L~~~ 166 (290)
+.+++-..... |..+-++ +-..+.+|=..-|.-+ ...+.+.|.+.+...|-+-+.+ --
T Consensus 99 tSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAv-ai 177 (286)
T PRK06801 99 SSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAV-AI 177 (286)
T ss_pred cEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEe-cc
Confidence 77777555553 4443333 3345666622222211 1223355556666678776666 55
Q ss_pred cCCCC-CCC-CCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 167 GTMFG-YND-LIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 167 gs~~~-y~~-~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
|+..+ |+. ..+|+..+..+++ .++|++. |+- |+. + ..-...++.+|++++=|
T Consensus 178 Gt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVl---HGG-----------Sgi--~-----~e~~~~~i~~Gi~KINv 232 (286)
T PRK06801 178 GNAHGKYKGEPKLDFARLAAIHQQTGLPLVL---HGG-----------SGI--S-----DADFRRAIELGIHKINF 232 (286)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHhcCCCEEE---ECC-----------CCC--C-----HHHHHHHHHcCCcEEEe
Confidence 55433 543 2478888888887 7899877 651 111 1 34456779999986533
No 160
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.49 E-value=0.98 Score=40.29 Aligned_cols=100 Identities=17% Similarity=0.064 Sum_probs=66.5
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEEEeecCcccHHHHhh-hcceecccCC---
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIVTDVHETVQCEEVGK-VADIIQIPAF--- 115 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~s~~~d~~~~~~l~~-~~d~~kIgs~--- 115 (290)
+.+.++|+++|...... +..|. .+.+..+.+.+++.| ++++..+.+++.+..+.+ .+|++.+...
T Consensus 86 ~~a~~aGad~I~~~~~~---~~~p~-------~~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t 155 (219)
T cd04729 86 DALAAAGADIIALDATD---RPRPD-------GETLAELIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTTLSGYT 155 (219)
T ss_pred HHHHHcCCCEEEEeCCC---CCCCC-------CcCHHHHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEccCcccc
Confidence 44555798877654322 11111 123445555555666 999999999988887777 6999876432
Q ss_pred ------ccCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 116 ------LCRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 116 ------~~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
...+.++++++.+ .+.||+..-|.. +.+++..+.+
T Consensus 156 ~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~-~~~~~~~~l~ 197 (219)
T cd04729 156 EETAKTEDPDFELLKELRKALGIPVIAEGRIN-SPEQAAKALE 197 (219)
T ss_pred ccccCCCCCCHHHHHHHHHhcCCCEEEeCCCC-CHHHHHHHHH
Confidence 1234577777754 589999999988 8988887654
No 161
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=93.49 E-value=1.2 Score=45.01 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=88.5
Q ss_pred HHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc--CCcEEEeecCcccHHHHhh---hcceeccc
Q 022892 39 IKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY--DIPIVTDVHETVQCEEVGK---VADIIQIP 113 (290)
Q Consensus 39 L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~--Gi~~~s~~~d~~~~~~l~~---~~d~~kIg 113 (290)
-++.+.+.|+|+|...+-.. .+.+..++++.++. .+.+++-+-+++.++-+++ .+|.+-||
T Consensus 179 di~f~~~~~vD~ia~SFV~~--------------~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~~DgImIa 244 (480)
T cd00288 179 DLRFGVEQGVDMIFASFVRK--------------ASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASDGIMVA 244 (480)
T ss_pred HHHHHHHcCCCEEEECCCCC--------------HHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEEC
Confidence 44566778999887653321 47788899998765 4778998888888877766 59999999
Q ss_pred CCcc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC
Q 022892 114 AFLC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 114 s~~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~ 174 (290)
-+|+ -+..+++.+-+.||||++.|-|- .|-.|+-..+..+. .|.+-++|-.-+..-.||-
T Consensus 245 rgDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~-dG~D~vmLS~ETa~G~yPv 323 (480)
T cd00288 245 RGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVL-DGTDCVMLSGETAKGKYPV 323 (480)
T ss_pred cchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHH-hCCcEEEEechhcCCCCHH
Confidence 9988 23345566777899999987663 35566666666665 4676677755444323775
Q ss_pred CCCCchhHHHHH
Q 022892 175 LIVDPRNLEWMR 186 (290)
Q Consensus 175 ~~~dL~~i~~lk 186 (290)
.++.+|.
T Consensus 324 -----eaV~~m~ 330 (480)
T cd00288 324 -----EAVKAMA 330 (480)
T ss_pred -----HHHHHHH
Confidence 3555553
No 162
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=93.43 E-value=6.7 Score=36.58 Aligned_cols=204 Identities=15% Similarity=0.139 Sum_probs=119.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCCh--hHHHHH-HHHHHHhcCCcEEEeecCcccHH--H
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGM--VEGLKI-LEKVKIAYDIPIVTDVHETVQCE--E 102 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~--~~~l~~-L~~~~~~~Gi~~~s~~~d~~~~~--~ 102 (290)
+.+..++.|++=.+.-++.|+|+|+.+.|...|.. +..+. ...+.. ..++.++.++|+-..++.-.... .
T Consensus 22 ~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~~-----~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~aal~ 96 (257)
T TIGR00259 22 NLNAVIDKAWKDAMALEEGGVDAVMFENFFDAPFL-----KEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAVAALA 96 (257)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCc-----CCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCHHHHH
Confidence 56788898888888888899999999877643421 12221 233443 34666889899888776533332 2
Q ss_pred Hh-h-hcceeccc----CCcc-------CCHHHHHHHHhcCCe------EEEeCCCC---CCHHHHHHHHHHHHHcC-CC
Q 022892 103 VG-K-VADIIQIP----AFLC-------RQTDLLVAAAKTGKI------INIKKGQF---CASSVMVNSAEKVRLAG-NP 159 (290)
Q Consensus 103 l~-~-~~d~~kIg----s~~~-------~n~~lL~~~a~~~~P------VilstG~~---~tl~e~~~Ave~i~~~G-n~ 159 (290)
++ . ..+|+.+- +.-. +=.+++|+=.+++.+ |..|.+.. -+++|...... ..| .+
T Consensus 97 iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~---~~~~aD 173 (257)
T TIGR00259 97 IAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTV---ERGLAD 173 (257)
T ss_pred HHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHH---HhcCCC
Confidence 22 2 58888773 3211 223566655555543 44565553 25555444332 233 33
Q ss_pred cEEEEeecCCCCCCCCCCCchhHHHHHh--cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 160 NVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 160 ~i~L~~~gs~~~y~~~~~dL~~i~~lk~--~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
-+++ .|...+.+ .|..-+...|+ .+.||.+ .+--. +.-...+... ++|+
T Consensus 174 aviv--tG~~TG~~---~d~~~l~~vr~~~~~~Pvll-ggGvt----------------------~eNv~e~l~~-adGv 224 (257)
T TIGR00259 174 AVIL--SGKTTGTE---VDLELLKLAKETVKDTPVLA-GSGVN----------------------LENVEELLSI-ADGV 224 (257)
T ss_pred EEEE--CcCCCCCC---CCHHHHHHHHhccCCCeEEE-ECCCC----------------------HHHHHHHHhh-CCEE
Confidence 3444 55443333 36677777776 4689987 33221 2222233333 9999
Q ss_pred EEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 238 FMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 238 ~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
++=++|--+- +...-.+++-+++|++.++++
T Consensus 225 iVgS~~K~~G---~~~n~~D~~rV~~Fm~~v~~~ 255 (257)
T TIGR00259 225 IVATTIKKDG---VFNNFVDQARVSQFVEKVAHG 255 (257)
T ss_pred EECCCcccCC---ccCCCcCHHHHHHHHHHHHHh
Confidence 9999984222 122348899999999998875
No 163
>PRK09206 pyruvate kinase; Provisional
Probab=93.39 E-value=1.3 Score=44.69 Aligned_cols=122 Identities=13% Similarity=0.094 Sum_probs=86.5
Q ss_pred HHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC---CcEEEeecCcccHHHHhh---hcceec
Q 022892 38 HIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD---IPIVTDVHETVQCEEVGK---VADIIQ 111 (290)
Q Consensus 38 ~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G---i~~~s~~~d~~~~~~l~~---~~d~~k 111 (290)
+-++.+.+.|+|+|...+-.. .+.+..++++..+.| +.+++-+-.++.++-+.+ .+|.+-
T Consensus 176 ~di~f~~~~~vD~ia~SFVr~--------------~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~~DgIm 241 (470)
T PRK09206 176 QDLIFGCEQGVDFVAASFIRK--------------RSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEASDGIM 241 (470)
T ss_pred HHHHHHHHcCCCEEEEcCCCC--------------HHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhCCEEE
Confidence 334556678999887653321 467888899998764 789999988888877766 599999
Q ss_pred ccCCcc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Q 022892 112 IPAFLC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGY 172 (290)
Q Consensus 112 Igs~~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y 172 (290)
||-+|+ .|..+++.+-+.|||||+-|-|- .|-.|+-..+..+. .|.+-++|-.-+..-.|
T Consensus 242 VaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~-dG~DavMLS~ETA~G~y 320 (470)
T PRK09206 242 VARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAIL-DGTDAVMLSGESAKGKY 320 (470)
T ss_pred ECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhh-hCCcEEEEechhcCCCC
Confidence 999988 34456677788999999988763 35567777666665 46666777444443237
Q ss_pred CC
Q 022892 173 ND 174 (290)
Q Consensus 173 ~~ 174 (290)
|.
T Consensus 321 Pv 322 (470)
T PRK09206 321 PL 322 (470)
T ss_pred HH
Confidence 75
No 164
>PRK15452 putative protease; Provisional
Probab=93.28 E-value=0.62 Score=46.58 Aligned_cols=117 Identities=10% Similarity=0.106 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHcCCCEEeccc--cccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe---ecCcccHHHHhhhc
Q 022892 33 MRMAKHIKSISTKVGLPLVFKSS--FDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD---VHETVQCEEVGKVA 107 (290)
Q Consensus 33 le~Ak~L~~~a~~~G~~~V~~~~--~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~---~~d~~~~~~l~~~~ 107 (290)
++.++..++ +|||+|+... |. -|.....| . .+.+++..++|++.|+.+..+ ......++.+.+.+
T Consensus 13 ~e~l~aAi~----~GADaVY~G~~~~~--~R~~~~~f---~-~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l 82 (443)
T PRK15452 13 LKNMRYAFA----YGADAVYAGQPRYS--LRVRNNEF---N-HENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDL 82 (443)
T ss_pred HHHHHHHHH----CCCCEEEECCCccc--hhhhccCC---C-HHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHH
Confidence 455555554 6999999853 33 23222223 2 467889999999999998776 34444555554432
Q ss_pred c---eecccCCccCCHHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEE
Q 022892 108 D---IIQIPAFLCRQTDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVM 162 (290)
Q Consensus 108 d---~~kIgs~~~~n~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~ 162 (290)
+ -+.+-+.-++|+-+++.+.+. +.||++++.+..+=. .+++++...|-..++
T Consensus 83 ~~l~~~gvDgvIV~d~G~l~~~ke~~p~l~ih~stqlni~N~---~a~~f~~~lG~~rvv 139 (443)
T PRK15452 83 EPVIAMKPDALIMSDPGLIMMVREHFPEMPIHLSVQANAVNW---ATVKFWQQMGLTRVI 139 (443)
T ss_pred HHHHhCCCCEEEEcCHHHHHHHHHhCCCCeEEEEecccCCCH---HHHHHHHHCCCcEEE
Confidence 2 223455566888888887764 789999998863222 233444444544433
No 165
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=93.27 E-value=1.8 Score=41.51 Aligned_cols=187 Identities=17% Similarity=0.168 Sum_probs=101.0
Q ss_pred CchhhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHH
Q 022892 2 DPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEK 81 (290)
Q Consensus 2 ~~~~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~ 81 (290)
|.||.+. .+...-| ++|+-.- -.+=++|.+++++.|...+..- |+ .+++..+.++
T Consensus 23 dlst~~~-~~~l~~P-~~inAM~--------t~in~~LA~~a~~~G~~~i~hK-~~--------------~E~~~sfvrk 77 (321)
T TIGR01306 23 DTSVTLG-KHKFKLP-VVPANMQ--------TIIDEKLAEQLAENGYFYIMHR-FD--------------EESRIPFIKD 77 (321)
T ss_pred eeeEEEC-CcEecCc-EEeeccc--------hhhhHHHHHHHHHcCCEEEEec-CC--------------HHHHHHHHHh
Confidence 5566665 3334555 4554432 1444555566666786655432 22 2344444444
Q ss_pred HHHhcCCcEEEeec----CcccHHHHhh-h--cceecccCCccCCHH---HHHHHHh-cCCeEEEeCCCCCCHHHHHHHH
Q 022892 82 VKIAYDIPIVTDVH----ETVQCEEVGK-V--ADIIQIPAFLCRQTD---LLVAAAK-TGKIINIKKGQFCASSVMVNSA 150 (290)
Q Consensus 82 ~~~~~Gi~~~s~~~----d~~~~~~l~~-~--~d~~kIgs~~~~n~~---lL~~~a~-~~~PVilstG~~~tl~e~~~Av 150 (290)
. +..++.+...+- |.+-+..+.+ . +|++.|-+..=.+.. .++.+.+ .+.|.+++-+.. |.+..+...
T Consensus 78 ~-k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~-t~e~a~~l~ 155 (321)
T TIGR01306 78 M-QERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVG-TPEAVRELE 155 (321)
T ss_pred c-cccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCC-CHHHHHHHH
Confidence 4 344555544432 2233333333 3 466666665444443 4555544 467888888786 888777654
Q ss_pred HHHHHcCCCcEEEE-eecCC--------CCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcc
Q 022892 151 EKVRLAGNPNVMVC-ERGTM--------FGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRE 220 (290)
Q Consensus 151 e~i~~~Gn~~i~L~-~~gs~--------~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~ 220 (290)
..|-.-|.+- +.|+. .+++. -.+.++...++ .++||+.|.-=. + |
T Consensus 156 ----~aGad~I~V~~G~G~~~~tr~~~g~g~~~--~~l~ai~ev~~a~~~pVIadGGIr---------------~-~--- 210 (321)
T TIGR01306 156 ----NAGADATKVGIGPGKVCITKIKTGFGTGG--WQLAALRWCAKAARKPIIADGGIR---------------T-H--- 210 (321)
T ss_pred ----HcCcCEEEECCCCCccccceeeeccCCCc--hHHHHHHHHHHhcCCeEEEECCcC---------------c-H---
Confidence 4566544433 22221 11221 13467777777 789998863321 1 2
Q ss_pred cHHHHHHHHHHcCCCEEEEeeeC
Q 022892 221 LIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 221 ~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
..+++ |+++||+++|+=.=|
T Consensus 211 --~Di~K-ALa~GAd~Vmig~~~ 230 (321)
T TIGR01306 211 --GDIAK-SIRFGASMVMIGSLF 230 (321)
T ss_pred --HHHHH-HHHcCCCEEeechhh
Confidence 34554 688999999987655
No 166
>PLN02826 dihydroorotate dehydrogenase
Probab=93.27 E-value=9.5 Score=37.87 Aligned_cols=118 Identities=15% Similarity=0.066 Sum_probs=72.2
Q ss_pred cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-----------------CCCCCCCCchhHHHHHh-c--
Q 022892 129 TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-----------------GYNDLIVDPRNLEWMRE-A-- 188 (290)
Q Consensus 129 ~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-----------------~y~~~~~dL~~i~~lk~-~-- 188 (290)
..+||++|=+...+.+++...++.+.+.|-+-|++..+.... +.+-...-++.+..+++ .
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 368999999998888899999998888888888887643210 11111223555666655 4
Q ss_pred CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCC-ChHHHHHHHHH
Q 022892 189 NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQW-PLRNLEELLEE 267 (290)
Q Consensus 189 ~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl-~p~~l~~lv~~ 267 (290)
.+||+.+.- -..| .-+...+.+||+ .+...- ++ .. .|.-++++.+.
T Consensus 341 ~ipIIgvGG----------------I~sg------~Da~e~i~AGAs--~VQv~T----a~-----~~~Gp~~i~~I~~e 387 (409)
T PLN02826 341 KIPLVGCGG----------------VSSG------EDAYKKIRAGAS--LVQLYT----AF-----AYEGPALIPRIKAE 387 (409)
T ss_pred CCcEEEECC----------------CCCH------HHHHHHHHhCCC--eeeecH----HH-----HhcCHHHHHHHHHH
Confidence 588876311 1112 234566889998 444431 11 11 36677777777
Q ss_pred HHHHHHHhCCcc
Q 022892 268 LVAIAKVSKGKQ 279 (290)
Q Consensus 268 ir~~~~~lg~~~ 279 (290)
+.+.-...|-++
T Consensus 388 L~~~l~~~G~~s 399 (409)
T PLN02826 388 LAACLERDGFKS 399 (409)
T ss_pred HHHHHHHcCCCC
Confidence 776544445433
No 167
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=93.25 E-value=2 Score=38.47 Aligned_cols=177 Identities=17% Similarity=0.129 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHH-Hh--
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEE-VG-- 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~-l~-- 104 (290)
+.+...++++.|.++ |++.|=-.. |..++. -.+.++.+.+.....-+..++. .....++. +.
T Consensus 12 ~~~~k~~i~~~L~~~----Gv~~iEvg~----~~~~~~------~~~~v~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~ 76 (237)
T PF00682_consen 12 STEEKLEIAKALDEA----GVDYIEVGF----PFASED------DFEQVRRLREALPNARLQALCR-ANEEDIERAVEAA 76 (237)
T ss_dssp -HHHHHHHHHHHHHH----TTSEEEEEH----CTSSHH------HHHHHHHHHHHHHSSEEEEEEE-SCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh----CCCEEEEcc----cccCHH------HHHHhhhhhhhhcccccceeee-ehHHHHHHHHHhh
Confidence 567788888888885 998875541 111110 1233444444444422222222 23333444 22
Q ss_pred --hhcceecccCCccC-------------CH----HHHHHHHhcCCeEEEeCCC--CCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 105 --KVADIIQIPAFLCR-------------QT----DLLVAAAKTGKIINIKKGQ--FCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 105 --~~~d~~kIgs~~~~-------------n~----~lL~~~a~~~~PVilstG~--~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
..++.+.+...... .. ..++.+-..+..|-+..-. ..+++++.+.++.+...|-+.|.|
T Consensus 77 ~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l 156 (237)
T PF00682_consen 77 KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYL 156 (237)
T ss_dssp HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEE
T ss_pred HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEe
Confidence 13454444322111 02 2334444567777766433 338999999999999889888888
Q ss_pred EeecCCCCCCCCCCCchhHHHHHh-cC-CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 164 CERGTMFGYNDLIVDPRNLEWMRE-AN-CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 164 ~~~gs~~~y~~~~~dL~~i~~lk~-~~-~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
+...+.. .|. .+. .-+..+++ ++ +|+++ +.|-. ..+...-+.+|+.+||+ .|+.
T Consensus 157 ~Dt~G~~-~P~-~v~-~lv~~~~~~~~~~~l~~-H~Hnd------------------~Gla~An~laA~~aGa~--~id~ 212 (237)
T PF00682_consen 157 ADTVGIM-TPE-DVA-ELVRALREALPDIPLGF-HAHND------------------LGLAVANALAALEAGAD--RIDG 212 (237)
T ss_dssp EETTS-S--HH-HHH-HHHHHHHHHSTTSEEEE-EEBBT------------------TS-HHHHHHHHHHTT-S--EEEE
T ss_pred eCccCCc-CHH-HHH-HHHHHHHHhccCCeEEE-EecCC------------------ccchhHHHHHHHHcCCC--EEEc
Confidence 7765531 222 122 45666777 65 89999 77753 22335567789999998 6665
Q ss_pred eC
Q 022892 242 HD 243 (290)
Q Consensus 242 H~ 243 (290)
-+
T Consensus 213 t~ 214 (237)
T PF00682_consen 213 TL 214 (237)
T ss_dssp BG
T ss_pred cC
Confidence 44
No 168
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=93.24 E-value=6.2 Score=35.67 Aligned_cols=180 Identities=18% Similarity=0.177 Sum_probs=108.2
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD 93 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~ 93 (290)
..++|+|..+..+.+....++. ++.+-+.|+.+|-+ -+| ... .. ...+.-+.+++.|+++|++|+--
T Consensus 5 ~~~lylvt~~~~~~~~~~~~~~----ve~al~~Gv~~vQl--R~K-~~~----~~--~~~~~a~~~~~lc~~~~v~liIN 71 (211)
T COG0352 5 LLRLYLVTDRPLIYDGVDLLEW----VEAALKGGVTAVQL--REK-DLS----DE--EYLALAEKLRALCQKYGVPLIIN 71 (211)
T ss_pred ccceEEEcCCccccccchhHHH----HHHHHhCCCeEEEE--ecC-CCC----hH--HHHHHHHHHHHHHHHhCCeEEec
Confidence 4578999877765333221333 34444568776533 222 000 00 00244567999999999999873
Q ss_pred ecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Q 022892 94 VHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGY 172 (290)
Q Consensus 94 ~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y 172 (290)
+.++...+ .+|-+-+|..++..... +++-.-++.|.+|+. +++|.+.|.+ .|-+.+.+-+. |+.
T Consensus 72 ----d~~dlA~~~~AdGVHlGq~D~~~~~a-r~~~~~~~iIG~S~h---~~eea~~A~~----~g~DYv~~Gpi---fpT 136 (211)
T COG0352 72 ----DRVDLALAVGADGVHLGQDDMPLAEA-RELLGPGLIIGLSTH---DLEEALEAEE----LGADYVGLGPI---FPT 136 (211)
T ss_pred ----CcHHHHHhCCCCEEEcCCcccchHHH-HHhcCCCCEEEeecC---CHHHHHHHHh----cCCCEEEECCc---CCC
Confidence 23455555 69999999998877654 445455778888887 7999998754 45455555333 222
Q ss_pred CC----CCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 173 ND----LIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 173 ~~----~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+. .-.-+..+.++++ ..+|++. + +|.. +.-+......||+|+-+=+-++
T Consensus 137 ~tK~~~~~~G~~~l~~~~~~~~iP~vA-----I---------------GGi~---~~nv~~v~~~Ga~gVAvvsai~ 190 (211)
T COG0352 137 STKPDAPPLGLEGLREIRELVNIPVVA-----I---------------GGIN---LENVPEVLEAGADGVAVVSAIT 190 (211)
T ss_pred CCCCCCCccCHHHHHHHHHhCCCCEEE-----E---------------cCCC---HHHHHHHHHhCCCeEEehhHhh
Confidence 11 2244556666666 4589754 1 2310 3445566788999986655553
No 169
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=93.16 E-value=1.2 Score=43.97 Aligned_cols=95 Identities=18% Similarity=0.162 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhc----ceecccCCcc--CCHHHHHHHHhcCC--eEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVA----DIIQIPAFLC--RQTDLLVAAAKTGK--IINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~----d~~kIgs~~~--~n~~lL~~~a~~~~--PVilstG~~~tl~ 144 (290)
.+.+.++.++++++.|..+-++|++.+-+-..... +-+||=..++ ||+..|+..-..+. -|++|-.+-+|+.
T Consensus 263 ~e~i~~~~~Lv~~YpivsiEDpl~E~Dweg~~~lt~~~g~kvqivGDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLT 342 (423)
T COG0148 263 EELIEYYLELVKKYPIVSIEDPLSEDDWEGFAELTKRLGDKVQIVGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLT 342 (423)
T ss_pred HHHHHHHHHHHHhCCEEEEcCCCCchhHHHHHHHHHhhCCeEEEECCcceecCHHHHHHHHHhccCceEEEechhcccHH
Confidence 57899999999999999899999999888766642 3346666665 89999988655444 7999999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecC
Q 022892 145 VMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
|..+|++..+..|- ..++-||..
T Consensus 343 Et~~ai~~A~~~gy-~~viSHRSG 365 (423)
T COG0148 343 ETLEAINLAKDAGY-TAVISHRSG 365 (423)
T ss_pred HHHHHHHHHHHCCC-eEEEecCCC
Confidence 99999999988764 578899965
No 170
>PTZ00300 pyruvate kinase; Provisional
Probab=93.15 E-value=1.6 Score=43.85 Aligned_cols=120 Identities=17% Similarity=0.153 Sum_probs=83.6
Q ss_pred HHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC--CcEEEeecCcccHHHHhh---hcceecccC
Q 022892 40 KSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD--IPIVTDVHETVQCEEVGK---VADIIQIPA 114 (290)
Q Consensus 40 ~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G--i~~~s~~~d~~~~~~l~~---~~d~~kIgs 114 (290)
++.+-+.|+|.|....-.. .+..+.+++++.+.| +.+++-+-.++.++-+.+ .+|.+-||-
T Consensus 153 I~~ald~gvd~I~~SfVrs--------------aeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaR 218 (454)
T PTZ00300 153 LQFGVEQGVDMIFASFIRS--------------AEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVAR 218 (454)
T ss_pred HHHHHHCCCCEEEECCCCC--------------HHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEec
Confidence 3445567999887643321 467888888886654 678998988888777766 599999999
Q ss_pred Ccc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC
Q 022892 115 FLC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 115 ~~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~ 174 (290)
+|+ .|..+++.+-+.|||||+.|-|- .|-.|+-..+..+. .|-+-++|-.-+..-.||.
T Consensus 219 GDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~-dG~DavMLS~ETA~G~yP~ 296 (454)
T PTZ00300 219 GDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVF-NGADCVMLSGETAKGKYPN 296 (454)
T ss_pred chhhhhcChHHHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHH-hCCcEEEEechhcCCCCHH
Confidence 987 34455666778899999988773 24466666666555 4666677755444323775
No 171
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=93.12 E-value=5.3 Score=34.52 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=87.2
Q ss_pred eEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecC
Q 022892 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHE 96 (290)
Q Consensus 17 ~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d 96 (290)
+|+|..+-.. ....++...++.+ .|++.|-.-..+ .+. ..+.+..+.+.+.|++.+++++-.-
T Consensus 1 ly~It~~~~~--~~~~~~~l~~~~~----~gv~~v~lR~k~----~~~-----~~~~~~a~~l~~~~~~~~~~liin~-- 63 (180)
T PF02581_consen 1 LYLITDPRLC--GDDFLEQLEAALA----AGVDLVQLREKD----LSD-----EELLELARRLAELCQKYGVPLIIND-- 63 (180)
T ss_dssp EEEEE-STTS--TCHHHHHHHHHHH----TT-SEEEEE-SS----S-H-----HHHHHHHHHHHHHHHHTTGCEEEES--
T ss_pred CEEEeCCchh--cchHHHHHHHHHH----CCCcEEEEcCCC----CCc-----cHHHHHHHHHHHHhhcceEEEEecC--
Confidence 4778777663 2335566666655 487765332111 000 0124667789999999999988754
Q ss_pred cccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC---CCCC
Q 022892 97 TVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT---MFGY 172 (290)
Q Consensus 97 ~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs---~~~y 172 (290)
..+...+ .+|-+-++..++.-... +..-..++.|..|.. +.+|+..|. +.|-+.+.+-+.=- .+++
T Consensus 64 --~~~la~~~~~dGvHl~~~~~~~~~~-r~~~~~~~~ig~S~h---~~~e~~~a~----~~g~dYv~~gpvf~T~sk~~~ 133 (180)
T PF02581_consen 64 --RVDLALELGADGVHLGQSDLPPAEA-RKLLGPDKIIGASCH---SLEEAREAE----ELGADYVFLGPVFPTSSKPGA 133 (180)
T ss_dssp ---HHHHHHCT-SEEEEBTTSSSHHHH-HHHHTTTSEEEEEES---SHHHHHHHH----HCTTSEEEEETSS--SSSSS-
T ss_pred --CHHHHHhcCCCEEEecccccchHHh-hhhcccceEEEeecC---cHHHHHHhh----hcCCCEEEECCccCCCCCccc
Confidence 4455555 58999999988754433 433344666666655 889877654 46677777665411 1223
Q ss_pred CCCCCCchhHHHHHh-cCCCEEE
Q 022892 173 NDLIVDPRNLEWMRE-ANCPVVA 194 (290)
Q Consensus 173 ~~~~~dL~~i~~lk~-~~~pV~~ 194 (290)
..+.+..+..+++ +.+||..
T Consensus 134 --~~~g~~~l~~~~~~~~~pv~A 154 (180)
T PF02581_consen 134 --PPLGLDGLREIARASPIPVYA 154 (180)
T ss_dssp --TTCHHHHHHHHHHHTSSCEEE
T ss_pred --cccCHHHHHHHHHhCCCCEEE
Confidence 2345666677776 7899865
No 172
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=93.11 E-value=1.1 Score=41.53 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=71.4
Q ss_pred HHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee----------cCccc----HHHHhh-hc
Q 022892 43 STKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV----------HETVQ----CEEVGK-VA 107 (290)
Q Consensus 43 a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~----------~d~~~----~~~l~~-~~ 107 (290)
+.+.|+++|....+.+ +.. +. ...+.+..+.+.|++.|+|++.-. ++++. +....+ .+
T Consensus 102 A~~~Gad~v~~~~~~g-~~~----~~--~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GA 174 (267)
T PRK07226 102 AIKLGADAVSVHVNVG-SET----EA--EMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGA 174 (267)
T ss_pred HHHcCCCEEEEEEecC-Chh----HH--HHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCC
Confidence 3446999887776553 100 10 024567778899999999998742 22222 233334 59
Q ss_pred ceecccCCccCCHHHHHHHHh-cCCeEEEeCCCCC-CHHHHHHHHHHHHHcCCC
Q 022892 108 DIIQIPAFLCRQTDLLVAAAK-TGKIINIKKGQFC-ASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~-~~~PVilstG~~~-tl~e~~~Ave~i~~~Gn~ 159 (290)
|++|.+.. ....+++++.+ .+.||..+=|... |.++.+.-++.+...|..
T Consensus 175 D~vKt~~~--~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~ 226 (267)
T PRK07226 175 DIVKTNYT--GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAA 226 (267)
T ss_pred CEEeeCCC--CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCc
Confidence 99999732 35677877764 5899999999874 677777777667777865
No 173
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.11 E-value=0.94 Score=44.24 Aligned_cols=110 Identities=10% Similarity=0.028 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-eecCcccHHHHhh-hc
Q 022892 30 EHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT-DVHETVQCEEVGK-VA 107 (290)
Q Consensus 30 ~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s-~~~d~~~~~~l~~-~~ 107 (290)
....++++.|++ +|+++|... .||....|.+. ...+..+.+.+++.+++++. .+++.+.+..+.+ .+
T Consensus 141 ~~~~e~a~~l~e----aGvd~I~vh-----grt~~~~h~~~--~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGA 209 (368)
T PRK08649 141 QRAQELAPTVVE----AGVDLFVIQ-----GTVVSAEHVSK--EGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGA 209 (368)
T ss_pred cCHHHHHHHHHH----CCCCEEEEe-----ccchhhhccCC--cCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCC
Confidence 345677777766 699988764 34433323211 11255678888889999998 9999998888877 79
Q ss_pred ceecccCCc--------cC--CHHHH---HHHHh-----------cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 108 DIIQIPAFL--------CR--QTDLL---VAAAK-----------TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 108 d~~kIgs~~--------~~--n~~lL---~~~a~-----------~~~PVilstG~~~tl~e~~~Ave 151 (290)
|.++||-.. .. -.|++ ..++. .+.|||-.=|.. +..++..|+.
T Consensus 210 D~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~-~~~diakAla 276 (368)
T PRK08649 210 AGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIG-TSGDIAKAIA 276 (368)
T ss_pred CEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCC-CHHHHHHHHH
Confidence 999998332 11 13443 23221 158999999998 9999988864
No 174
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=93.05 E-value=5.4 Score=34.51 Aligned_cols=178 Identities=17% Similarity=0.149 Sum_probs=97.4
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeec
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVH 95 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~ 95 (290)
++|+|..|-.. + ...++..+++.+ .|+++|-. ..| .. ....+.+.+..+...|+++|++++..-
T Consensus 1 ~ly~it~~~~~-~-~~~~~~~~~~~~----~g~~~v~l--R~~-~~------~~~~~~~~~~~l~~~~~~~~~~l~i~~- 64 (196)
T TIGR00693 1 GLYLITDPQDG-P-ADLLNRVEAALK----GGVTLVQL--RDK-GS------NTRERLALAEKLQELCRRYGVPFIVND- 64 (196)
T ss_pred CEEEEECCccc-c-ccHHHHHHHHHh----cCCCEEEE--ecC-CC------CHHHHHHHHHHHHHHHHHhCCeEEEEC-
Confidence 36778776431 1 123344444433 58887622 221 00 000113456778999999999998853
Q ss_pred CcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE---eecCCCC
Q 022892 96 ETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC---ERGTMFG 171 (290)
Q Consensus 96 d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~---~~gs~~~ 171 (290)
.++.+.+ .++-+-++..++.-.. ++..-..++.|.++. . +.+|...|.+ .|-+.+.+- +.++..+
T Consensus 65 ---~~~la~~~g~~GvHl~~~~~~~~~-~r~~~~~~~~ig~s~--h-~~~e~~~a~~----~g~dyi~~~~v~~t~~k~~ 133 (196)
T TIGR00693 65 ---RVDLALALGADGVHLGQDDLPASE-ARALLGPDKIIGVST--H-NLEELAEAEA----EGADYIGFGPIFPTPTKKD 133 (196)
T ss_pred ---HHHHHHHcCCCEEecCcccCCHHH-HHHhcCCCCEEEEeC--C-CHHHHHHHhH----cCCCEEEECCccCCCCCCC
Confidence 3555555 5777778776654322 233333345555554 4 8888776554 455544442 2222111
Q ss_pred CCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 172 YNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 172 y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+. ...++..+..+++ + ++||..= +|.. +.-...+...|++|+.+-.-++
T Consensus 134 ~~-~~~g~~~l~~~~~~~~~~pv~a~--------------------GGI~---~~~~~~~~~~G~~gva~~~~i~ 184 (196)
T TIGR00693 134 PA-PPAGVELLREIAATSIDIPIVAI--------------------GGIT---LENAAEVLAAGADGVAVVSAIM 184 (196)
T ss_pred CC-CCCCHHHHHHHHHhcCCCCEEEE--------------------CCcC---HHHHHHHHHcCCCEEEEhHHhh
Confidence 10 1235667777765 4 5888661 1311 2334455688999999887775
No 175
>PLN02762 pyruvate kinase complex alpha subunit
Probab=93.04 E-value=1.5 Score=44.65 Aligned_cols=121 Identities=13% Similarity=0.116 Sum_probs=87.1
Q ss_pred HHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC----CcEEEeecCcccHHHHhh---hcceec
Q 022892 39 IKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD----IPIVTDVHETVQCEEVGK---VADIIQ 111 (290)
Q Consensus 39 L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G----i~~~s~~~d~~~~~~l~~---~~d~~k 111 (290)
-++.+.+.|+|+|...+-.. .+.+..+++++.+.| +++++-+-.++.++-+.+ ..|-+-
T Consensus 208 di~f~~~~~vD~ia~SFVr~--------------a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~sDgiM 273 (509)
T PLN02762 208 DIDFGISEGVDFIAVSFVKS--------------AEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNLEEIIRASDGAM 273 (509)
T ss_pred HHHHHHHcCCCEEEECCCCC--------------HHHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHHHHHHHhcCEEE
Confidence 34566678999987753321 477999999998875 689999998888887776 599999
Q ss_pred ccCCcc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Q 022892 112 IPAFLC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGY 172 (290)
Q Consensus 112 Igs~~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y 172 (290)
|+=+|+ -|-.+++.+-..+||||+.|-|- .|-.|+-..+..+. .|.+-++|---+..-.|
T Consensus 274 VARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVl-DGtDavMLSgETA~G~y 352 (509)
T PLN02762 274 VARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVR-QRADALMLSGESAMGLY 352 (509)
T ss_pred EecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHH-hCCCEEEEcchhcCCCC
Confidence 999987 34456677778999999988773 24466666666665 57766666444433237
Q ss_pred CC
Q 022892 173 ND 174 (290)
Q Consensus 173 ~~ 174 (290)
|-
T Consensus 353 Pv 354 (509)
T PLN02762 353 PE 354 (509)
T ss_pred HH
Confidence 75
No 176
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=93.04 E-value=7.5 Score=36.23 Aligned_cols=179 Identities=17% Similarity=0.240 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCccc-------------CCCCChhHHHHHHHHHH-HhcCCcEEE-
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKS-------------FRGPGMVEGLKILEKVK-IAYDIPIVT- 92 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~-------------~~g~~~~~~l~~L~~~~-~~~Gi~~~s- 92 (290)
|.+..++.++.|.+ .|+|++=.+. |-+.|.. -.|..+.+.+++++++. +...+|++-
T Consensus 22 ~~~~~~~~~~~l~~----~GaD~iEiGi----PfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm 93 (259)
T PF00290_consen 22 DLETTLEILKALEE----AGADIIEIGI----PFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLM 93 (259)
T ss_dssp SHHHHHHHHHHHHH----TTBSSEEEE------SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEE
T ss_pred CHHHHHHHHHHHHH----cCCCEEEECC----CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEE
Confidence 56777888877777 6999987664 3343431 12444456788889998 778888755
Q ss_pred eecCcc---cH----HHHhh-hcceecccCCccCC-HHHHHHHHhcCC-eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEE
Q 022892 93 DVHETV---QC----EEVGK-VADIIQIPAFLCRQ-TDLLVAAAKTGK-IINIKKGQFCASSVMVNSAEKVRLAGNPNVM 162 (290)
Q Consensus 93 ~~~d~~---~~----~~l~~-~~d~~kIgs~~~~n-~~lL~~~a~~~~-PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~ 162 (290)
+-+++- .+ +.+.+ .+|-+-|+---... .++...+.+.|. +|.|=+..+ +.+.+...++ .+..-|-
T Consensus 94 ~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t-~~~Ri~~i~~----~a~gFiY 168 (259)
T PF00290_consen 94 TYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTT-PEERIKKIAK----QASGFIY 168 (259)
T ss_dssp E-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS--HHHHHHHHH----H-SSEEE
T ss_pred eeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHH----hCCcEEE
Confidence 443331 12 22333 47777777655533 355555666777 455555545 5555555443 2222233
Q ss_pred EEeecCCCCCCCCCCC---chhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEE
Q 022892 163 VCERGTMFGYNDLIVD---PRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVF 238 (290)
Q Consensus 163 L~~~gs~~~y~~~~~d---L~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~ 238 (290)
++-+-...+... .++ -..+..+|+ +++||.+- -++ .. +..+.. +..||||+|
T Consensus 169 ~vs~~GvTG~~~-~~~~~l~~~i~~ik~~~~~Pv~vG--FGI---------------~~-----~e~~~~-~~~~aDGvI 224 (259)
T PF00290_consen 169 LVSRMGVTGSRT-ELPDELKEFIKRIKKHTDLPVAVG--FGI---------------ST-----PEQAKK-LAAGADGVI 224 (259)
T ss_dssp EESSSSSSSTTS-SCHHHHHHHHHHHHHTTSS-EEEE--SSS----------------S-----HHHHHH-HHTTSSEEE
T ss_pred eeccCCCCCCcc-cchHHHHHHHHHHHhhcCcceEEe--cCC---------------CC-----HHHHHH-HHccCCEEE
Confidence 322211112222 111 134556677 78897551 111 11 344444 348999999
Q ss_pred EeeeC
Q 022892 239 MEVHD 243 (290)
Q Consensus 239 IEkH~ 243 (290)
|=+.+
T Consensus 225 VGSa~ 229 (259)
T PF00290_consen 225 VGSAF 229 (259)
T ss_dssp ESHHH
T ss_pred ECHHH
Confidence 98876
No 177
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=93.02 E-value=2 Score=39.85 Aligned_cols=132 Identities=11% Similarity=0.084 Sum_probs=89.7
Q ss_pred hhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHH
Q 022892 5 TALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKI 84 (290)
Q Consensus 5 ~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~ 84 (290)
.+++..|.. .++.++---..+.|-+.+..+|+--.++ .|-+.||..-... +++ +.....++-+.|+
T Consensus 52 ~~~~~~i~~-~~~~~lpNTaG~~ta~eAv~~a~lare~---~~~~~iKlEVi~d-~~~---------Llpd~~~tv~aa~ 117 (248)
T cd04728 52 ESFLDLLDK-SGYTLLPNTAGCRTAEEAVRTARLAREA---LGTDWIKLEVIGD-DKT---------LLPDPIETLKAAE 117 (248)
T ss_pred chHHhhccc-cCCEECCCCCCCCCHHHHHHHHHHHHHH---hCCCeEEEEEecC-ccc---------cccCHHHHHHHHH
Confidence 455666643 2333332222244677777777766665 4688998875542 222 1234566666777
Q ss_pred hc---CCcEE-EeecCcccHHHHhh-hcceec-----ccCC-ccCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 85 AY---DIPIV-TDVHETVQCEEVGK-VADIIQ-----IPAF-LCRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 85 ~~---Gi~~~-s~~~d~~~~~~l~~-~~d~~k-----Igs~-~~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
++ |+.++ -..-|+..+..+++ .++++- |||+ -+.|.++++.+.+ .+.||+.--|.. |++++..|.+
T Consensus 118 ~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~egGI~-tpeda~~Ame 195 (248)
T cd04728 118 ILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDAGIG-TPSDAAQAME 195 (248)
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEeCCCC-CHHHHHHHHH
Confidence 77 99999 78888888888888 577663 3444 2368899998876 578999999999 9999999877
No 178
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=92.93 E-value=1.2 Score=39.50 Aligned_cols=106 Identities=20% Similarity=0.149 Sum_probs=64.1
Q ss_pred CCccCCHHHH----HHHH-hcCCeEEEeCCCCCCHH-HHHHHHHHHHHcCCCcEEEEeecCCCC-CCCCCCCchhHHHHH
Q 022892 114 AFLCRQTDLL----VAAA-KTGKIINIKKGQFCASS-VMVNSAEKVRLAGNPNVMVCERGTMFG-YNDLIVDPRNLEWMR 186 (290)
Q Consensus 114 s~~~~n~~lL----~~~a-~~~~PVilstG~~~tl~-e~~~Ave~i~~~Gn~~i~L~~~gs~~~-y~~~~~dL~~i~~lk 186 (290)
+....+..++ +++. ..+.||.+|...+.+.+ ++...++.+...|-.-+ .+|..+... |. ...++..+..++
T Consensus 102 ~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i-~v~~~~~~~~~~-~~~~~~~~~~i~ 179 (231)
T cd02801 102 AALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASAL-TVHGRTREQRYS-GPADWDYIAEIK 179 (231)
T ss_pred ehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEE-EECCCCHHHcCC-CCCCHHHHHHHH
Confidence 3334565444 3432 34579999865543444 88888888887776444 445544211 22 235777888888
Q ss_pred h-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc-CCCEEEEeeeC
Q 022892 187 E-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV-GVDGVFMEVHD 243 (290)
Q Consensus 187 ~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~-GA~G~~IEkH~ 243 (290)
+ .++||+.+.+=. . ..-+..++.. ||+|+++=+-+
T Consensus 180 ~~~~ipvi~~Ggi~-----------------~-----~~d~~~~l~~~gad~V~igr~~ 216 (231)
T cd02801 180 EAVSIPVIANGDIF-----------------S-----LEDALRCLEQTGVDGVMIGRGA 216 (231)
T ss_pred hCCCCeEEEeCCCC-----------------C-----HHHHHHHHHhcCCCEEEEcHHh
Confidence 8 789998843311 1 3334455666 89999987654
No 179
>PLN02623 pyruvate kinase
Probab=92.91 E-value=1.7 Score=44.88 Aligned_cols=125 Identities=11% Similarity=0.103 Sum_probs=84.8
Q ss_pred HHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC--CcEEEeecCcccHHHHhh---hcceecccC
Q 022892 40 KSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD--IPIVTDVHETVQCEEVGK---VADIIQIPA 114 (290)
Q Consensus 40 ~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G--i~~~s~~~d~~~~~~l~~---~~d~~kIgs 114 (290)
++.+.+.|+|.|...+-.. .+.+..+++|.++.| +.+++-+-+++.++-+++ .+|.+-||-
T Consensus 284 i~f~~~~~vD~ialSFVr~--------------a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIgr 349 (581)
T PLN02623 284 IKFGVENKVDFYAVSFVKD--------------AQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVAR 349 (581)
T ss_pred HHHHHHcCCCEEEECCCCC--------------HHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEECc
Confidence 4556667898877643221 467888999987765 678888888888777666 699999999
Q ss_pred Ccc-----------CCHHHHHHHHhcCCeEEEeC---------CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCC
Q 022892 115 FLC-----------RQTDLLVAAAKTGKIINIKK---------GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYN 173 (290)
Q Consensus 115 ~~~-----------~n~~lL~~~a~~~~PVilst---------G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~ 173 (290)
+|+ -+..+++.+-+.||||++.| +.. |-.|+..+...+. .|-+-++|---. .+ .||
T Consensus 350 gDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~P-TRAEv~Dva~av~-dG~d~vmLs~Et-a~G~yP 426 (581)
T PLN02623 350 GDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTP-TRAEVSDIAIAVR-EGADAVMLSGET-AHGKFP 426 (581)
T ss_pred chhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCC-CchhHHHHHHHHH-cCCCEEEecchh-hcCcCH
Confidence 988 23345566777899999877 444 6677777777665 565444443222 23 377
Q ss_pred CCCCCchhHHHHH
Q 022892 174 DLIVDPRNLEWMR 186 (290)
Q Consensus 174 ~~~~dL~~i~~lk 186 (290)
. .++.+|+
T Consensus 427 v-----eaV~~m~ 434 (581)
T PLN02623 427 L-----KAVKVMH 434 (581)
T ss_pred H-----HHHHHHH
Confidence 5 4555553
No 180
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=92.88 E-value=7.1 Score=37.79 Aligned_cols=130 Identities=15% Similarity=0.033 Sum_probs=70.6
Q ss_pred HHHHHH-hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCCCchhHHHHHh----c--CCCEE
Q 022892 122 LLVAAA-KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNLEWMRE----A--NCPVV 193 (290)
Q Consensus 122 lL~~~a-~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~~~~dL~~i~~lk~----~--~~pV~ 193 (290)
.++.+. .++.||++| |.. +.++.+.++ ..|-+-|++-..|... ..... -..+++.+++ . .+||+
T Consensus 204 ~i~~l~~~~~~PvivK-gv~-~~~dA~~a~----~~G~d~I~vsnhgG~~~d~~~~--~~~~L~~i~~~~~~~~~~~~vi 275 (344)
T cd02922 204 DIKWLRKHTKLPIVLK-GVQ-TVEDAVLAA----EYGVDGIVLSNHGGRQLDTAPA--PIEVLLEIRKHCPEVFDKIEVY 275 (344)
T ss_pred HHHHHHHhcCCcEEEE-cCC-CHHHHHHHH----HcCCCEEEEECCCcccCCCCCC--HHHHHHHHHHHHHHhCCCceEE
Confidence 345543 467899999 554 777776654 4677777776555431 11001 1123333332 1 48898
Q ss_pred EeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 022892 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAK 273 (290)
Q Consensus 194 ~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~ 273 (290)
.|..=. .| ..+. .|+++||+++.|-+-|-..-. ..+ ..--..-+..+.++++.+-.
T Consensus 276 ~~GGIr----------------~G-----~Dv~-kalaLGA~aV~iG~~~l~~l~-~~G-~~gv~~~l~~l~~EL~~~m~ 331 (344)
T cd02922 276 VDGGVR----------------RG-----TDVL-KALCLGAKAVGLGRPFLYALS-AYG-EEGVEKAIQILKDEIETTMR 331 (344)
T ss_pred EeCCCC----------------CH-----HHHH-HHHHcCCCEEEECHHHHHHHh-hcc-HHHHHHHHHHHHHHHHHHHH
Confidence 853322 13 3444 579999999988866522110 011 00011145666677777777
Q ss_pred HhCCcccccc
Q 022892 274 VSKGKQRMNI 283 (290)
Q Consensus 274 ~lg~~~~~~~ 283 (290)
.+|.+++-++
T Consensus 332 l~G~~~i~~l 341 (344)
T cd02922 332 LLGVTSLDQL 341 (344)
T ss_pred HhCCCCHHHh
Confidence 7787665443
No 181
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.84 E-value=4 Score=39.28 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=79.1
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCC--CEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEEE
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGL--PLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIVT 92 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~--~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~s 92 (290)
.+++=++++. +. ...+.+.+|++ +|+ |+|-...-. +.. ....+.++++++++. ++++.
T Consensus 85 ~l~v~~~vg~--~~-~~~~~~~~Lv~----ag~~~d~i~iD~a~-----------gh~-~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 85 GLIASISVGV--KD-DEYDFVDQLAA----EGLTPEYITIDIAH-----------GHS-DSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred ccEEEEEecC--CH-HHHHHHHHHHh----cCCCCCEEEEECCC-----------Cch-HHHHHHHHHHHhhCCCCeEEE
Confidence 4444444443 33 45677888877 455 988764321 111 344555777777885 99999
Q ss_pred -eecCcccHHHHhh-hcceeccc---CCcc-C-----------CHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 93 -DVHETVQCEEVGK-VADIIQIP---AFLC-R-----------QTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 93 -~~~d~~~~~~l~~-~~d~~kIg---s~~~-~-----------n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
++-+.+.+..+.+ .+|++++| .+.+ + +++.++.+.+ .+.|||-+-|.. +..++..|+.
T Consensus 146 g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~-~~~Di~KaLa 221 (326)
T PRK05458 146 GNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIR-THGDIAKSIR 221 (326)
T ss_pred EecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCC-CHHHHHHHHH
Confidence 8999999999988 79999987 3222 2 2334666554 588999999988 9999988865
No 182
>PRK06247 pyruvate kinase; Provisional
Probab=92.82 E-value=1.2 Score=44.91 Aligned_cols=126 Identities=16% Similarity=0.199 Sum_probs=87.3
Q ss_pred HHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh---hcceecccCCc
Q 022892 40 KSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK---VADIIQIPAFL 116 (290)
Q Consensus 40 ~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~---~~d~~kIgs~~ 116 (290)
++.+.+.|+|.|...+-.. .+.+..+++++.+ .+.+++-+-+++.++-+.+ .+|.+-||-+|
T Consensus 179 i~f~~~~~vD~ia~SFVr~--------------a~Di~~~r~~l~~-~~~iiaKIEt~eav~nldeI~~~~DgImVaRGD 243 (476)
T PRK06247 179 LEFALELGVDWVALSFVQR--------------PEDVEEVRKIIGG-RVPVMAKIEKPQAIDRLEAIVEASDAIMVARGD 243 (476)
T ss_pred HHHHHHcCCCEEEECCCCC--------------HHHHHHHHHHhhh-cCeEEEEECCHHHHHhHHHHHHHcCEEEEccch
Confidence 4556677888887643221 4778889999865 6889999988888877766 59999999998
Q ss_pred c-----------CCHHHHHHHHhcCCeEEEeCCCCC--------CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCC
Q 022892 117 C-----------RQTDLLVAAAKTGKIINIKKGQFC--------ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV 177 (290)
Q Consensus 117 ~-----------~n~~lL~~~a~~~~PVilstG~~~--------tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~ 177 (290)
+ .+..+++.+-+.+||||+.|-|-- |=.|+-..+..+. .|.+-++|..-+..-.||.
T Consensus 244 Lgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~-dG~DavMLS~ETA~G~yPv--- 319 (476)
T PRK06247 244 LGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVL-DGADAVMLSAETASGKYPV--- 319 (476)
T ss_pred hccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHH-hCCcEEEEcchhcCCCCHH---
Confidence 8 334566667788999999887742 4456666665554 4776677755444323775
Q ss_pred CchhHHHHH
Q 022892 178 DPRNLEWMR 186 (290)
Q Consensus 178 dL~~i~~lk 186 (290)
.++.+|+
T Consensus 320 --eaV~~m~ 326 (476)
T PRK06247 320 --EAVRTMA 326 (476)
T ss_pred --HHHHHHH
Confidence 3555553
No 183
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=92.74 E-value=0.97 Score=43.69 Aligned_cols=84 Identities=18% Similarity=0.164 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh--hcceecccCCccCCH----HHHHHHHh---------cCCeEEEeC
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK--VADIIQIPAFLCRQT----DLLVAAAK---------TGKIINIKK 137 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~--~~d~~kIgs~~~~n~----~lL~~~a~---------~~~PVilst 137 (290)
.+.|+.|.++|+++|+.++.|+||.++++.+.+ .++++-|-.|++..+ ..-..+.. .+.-++-..
T Consensus 216 ~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsES 295 (338)
T PLN02460 216 DLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGES 295 (338)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECC
Confidence 357999999999999999999999999998776 489999999988322 21122222 122244457
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 138 GQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 138 G~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
|.. |.+++.. +...|-+-+
T Consensus 296 GI~-t~~Dv~~----l~~~GadAv 314 (338)
T PLN02460 296 GLF-TPDDVAY----VQNAGVKAV 314 (338)
T ss_pred CCC-CHHHHHH----HHHCCCCEE
Confidence 887 9998876 445665433
No 184
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=92.72 E-value=5.8 Score=37.55 Aligned_cols=166 Identities=17% Similarity=0.168 Sum_probs=93.2
Q ss_pred HHHHHcCCCEEeccccccC---CCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcceecccC
Q 022892 41 SISTKVGLPLVFKSSFDKA---NRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VADIIQIPA 114 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~---~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d~~kIgs 114 (290)
++|+++|+-+||- +++- -|...+ .---.+.+.+++..+...||++. -.-+..+++.|.+ .+|++- .|
T Consensus 24 ~iae~aga~avm~--le~~p~d~r~~gg----v~R~~~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiID-eT 96 (287)
T TIGR00343 24 KIAEEAGAVAVMA--LERVPADIRASGG----VARMSDPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYID-ES 96 (287)
T ss_pred HHHHHcCceEEEe--eccCchhhHhcCC----eeecCCHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEE-cc
Confidence 5778899998885 2211 122111 10014566677777778899887 4444667777777 688883 22
Q ss_pred CccCCH-HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC---------------------
Q 022892 115 FLCRQT-DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGY--------------------- 172 (290)
Q Consensus 115 ~~~~n~-~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y--------------------- 172 (290)
.-.+-. ++.... +...-+.|=.|.+ |++|.+++++ .|-.=| +++-++|
T Consensus 97 e~lrPade~~~~~-K~~f~vpfmad~~-~l~EAlrai~----~GadmI----~Tt~e~gTg~v~~av~hlr~~~~~~~~~ 166 (287)
T TIGR00343 97 EVLTPADWTFHID-KKKFKVPFVCGAR-DLGEALRRIN----EGAAMI----RTKGEAGTGNIVEAVRHMRKINEEIRQI 166 (287)
T ss_pred CCCCcHHHHHHHH-HHHcCCCEEccCC-CHHHHHHHHH----CCCCEE----eccccCCCccHHHHHHHHHHHHHHHHHH
Confidence 222332 232223 3222455556777 8888888765 222111 1111111
Q ss_pred ------------CC-CCCCchhHHHHHh-cCCCEE-EeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 173 ------------ND-LIVDPRNLEWMRE-ANCPVV-ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 173 ------------~~-~~~dL~~i~~lk~-~~~pV~-~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
.. ...++..+..+++ .++||+ | +-=++ .. +.-+..+..+||+|+
T Consensus 167 ~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~f-AiGGI---------------~T-----PedAa~~melGAdGV 225 (287)
T TIGR00343 167 QNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNF-AAGGV---------------AT-----PADAALMMQLGADGV 225 (287)
T ss_pred hcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEe-ccCCC---------------CC-----HHHHHHHHHcCCCEE
Confidence 00 2356777788877 689997 3 11110 01 444556788999999
Q ss_pred EEeeeCC
Q 022892 238 FMEVHDD 244 (290)
Q Consensus 238 ~IEkH~t 244 (290)
++=+-++
T Consensus 226 aVGSaI~ 232 (287)
T TIGR00343 226 FVGSGIF 232 (287)
T ss_pred EEhHHhh
Confidence 9988875
No 185
>PRK09875 putative hydrolase; Provisional
Probab=92.69 E-value=9.2 Score=36.18 Aligned_cols=77 Identities=21% Similarity=0.163 Sum_probs=52.1
Q ss_pred ee-cccCCc--cCCH--HHHHHHH----hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC--CcEEEEeecCCCCCCCCCC
Q 022892 109 II-QIPAFL--CRQT--DLLVAAA----KTGKIINIKKGQFCASSVMVNSAEKVRLAGN--PNVMVCERGTMFGYNDLIV 177 (290)
Q Consensus 109 ~~-kIgs~~--~~n~--~lL~~~a----~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn--~~i~L~~~gs~~~y~~~~~ 177 (290)
++ +||+.. ++.. ..+++++ .+|.||.+-|+.. + +....++.+.+.|- .++++.|+... .
T Consensus 122 vIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~-~--~g~e~l~il~e~Gvd~~rvvi~H~d~~-------~ 191 (292)
T PRK09875 122 IIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFS-T--MGLEQLALLQAHGVDLSRVTVGHCDLK-------D 191 (292)
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEEcCCCc-c--chHHHHHHHHHcCcCcceEEEeCCCCC-------C
Confidence 45 888765 4433 3445544 5899999988765 3 33334677888886 68999998742 2
Q ss_pred CchhHHHHHhcCCCEEEe
Q 022892 178 DPRNLEWMREANCPVVAD 195 (290)
Q Consensus 178 dL~~i~~lk~~~~pV~~D 195 (290)
|+..+..+-+.|+-|.||
T Consensus 192 d~~~~~~l~~~G~~l~fD 209 (292)
T PRK09875 192 NLDNILKMIDLGAYVQFD 209 (292)
T ss_pred CHHHHHHHHHcCCEEEec
Confidence 555666666688889987
No 186
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=92.69 E-value=3.2 Score=40.63 Aligned_cols=133 Identities=19% Similarity=0.140 Sum_probs=71.6
Q ss_pred HHHHHHhcCCcEEEeecCc----ccHHHHhh-hcceecccCCc---------cCCHHHHHHHHhcCCeEEEeCCCCCCHH
Q 022892 79 LEKVKIAYDIPIVTDVHET----VQCEEVGK-VADIIQIPAFL---------CRQTDLLVAAAKTGKIINIKKGQFCASS 144 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~----~~~~~l~~-~~d~~kIgs~~---------~~n~~lL~~~a~~~~PVilstG~~~tl~ 144 (290)
++++.+ .++.+.... ++ +.++.+.+ .+|++-|-.+. -...++.+.+...+.||+. .+.. |.+
T Consensus 125 i~~vr~-a~VtvkiRl-~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-G~V~-t~e 200 (369)
T TIGR01304 125 IAEVRD-SGVITAVRV-SPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-GGVN-DYT 200 (369)
T ss_pred HHHHHh-cceEEEEec-CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE-eCCC-CHH
Confidence 344433 455555544 22 22334444 58999875332 2344555667778999997 3334 888
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC---chhHHHH--------HhcC---CCEEEeCCCCCCCCCCCccCC
Q 022892 145 VMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD---PRNLEWM--------REAN---CPVVADVTHSLQQPAGKKLDG 210 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d---L~~i~~l--------k~~~---~pV~~D~sHs~~~~~~~~~~~ 210 (290)
+.+.+.+ .|.+-|++-+.|+.+.-....+. ..++... ++++ +||+.|..=..
T Consensus 201 ~A~~~~~----aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~t---------- 266 (369)
T TIGR01304 201 TALHLMR----TGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIET---------- 266 (369)
T ss_pred HHHHHHH----cCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCC----------
Confidence 8776653 57766664444433211000011 1233332 2233 89988633211
Q ss_pred CCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 211 GGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 211 ~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
+ ..++ .|+++||+|+++=.
T Consensus 267 ------g-----~di~-kAlAlGAdaV~iGt 285 (369)
T TIGR01304 267 ------S-----GDLV-KAIACGADAVVLGS 285 (369)
T ss_pred ------H-----HHHH-HHHHcCCCEeeeHH
Confidence 2 3344 57899999999865
No 187
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=92.52 E-value=9 Score=40.61 Aligned_cols=154 Identities=19% Similarity=0.199 Sum_probs=99.7
Q ss_pred HHhhhcCCCCeEEEEccC-------CccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHH
Q 022892 7 LFNQLKAAEPFFLLAGPN-------VIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKIL 79 (290)
Q Consensus 7 ~~~~i~~~~~~~iIAgpc-------sien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L 79 (290)
++..+.....+-||||.- .|...-...++|+...+ .|+.+|--- |-+..|+ ..+..|
T Consensus 40 ~~~al~~~~~~~vIaEiKraSPs~G~i~~~~d~~~~a~~y~~----~GA~aiSVl-------Te~~~F~-----Gs~~~l 103 (695)
T PRK13802 40 ATRWLKRADGIPVIAEIKRASPSKGHLSDIPDPAALAREYEQ----GGASAISVL-------TEGRRFL-----GSLDDF 103 (695)
T ss_pred HHHHHhhCCCCeEEEEeecCCCCCCcCCCCCCHHHHHHHHHH----cCCcEEEEe-------cCcCcCC-----CCHHHH
Confidence 333443333478999753 22112245677776665 699887532 2222243 346778
Q ss_pred HHHHHhcCCcEEEe--ecCcccHHHHhh-hcceecccCCccCC--H-HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHH
Q 022892 80 EKVKIAYDIPIVTD--VHETVQCEEVGK-VADIIQIPAFLCRQ--T-DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKV 153 (290)
Q Consensus 80 ~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~d~~kIgs~~~~n--~-~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i 153 (290)
+++++...+|++.- +.|+.++..... ..|++-+=.+.+.. + .|++.+.++|+-+++... +.+|+..|++
T Consensus 104 ~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh---~~~el~~a~~-- 178 (695)
T PRK13802 104 DKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETH---TREEIERAIA-- 178 (695)
T ss_pred HHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHh--
Confidence 88888899999983 667777777666 57877666665543 3 577778889999999986 8899998875
Q ss_pred HHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh
Q 022892 154 RLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE 187 (290)
Q Consensus 154 ~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~ 187 (290)
.|..=|-+=.|. ..+..+|+.....|..
T Consensus 179 --~ga~iiGINnRd----L~tf~vd~~~t~~L~~ 206 (695)
T PRK13802 179 --AGAKVIGINARN----LKDLKVDVNKYNELAA 206 (695)
T ss_pred --CCCCEEEEeCCC----CccceeCHHHHHHHHh
Confidence 455444444443 4456688877777765
No 188
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=92.51 E-value=0.44 Score=45.36 Aligned_cols=79 Identities=18% Similarity=0.106 Sum_probs=50.0
Q ss_pred eecccCCc--cCCH--HHHHHHH----hcCCeEEEeCCCCC-CHHHHHHHHHHHHHcCC--CcEEEEeecCCCCCCCCCC
Q 022892 109 IIQIPAFL--CRQT--DLLVAAA----KTGKIINIKKGQFC-ASSVMVNSAEKVRLAGN--PNVMVCERGTMFGYNDLIV 177 (290)
Q Consensus 109 ~~kIgs~~--~~n~--~lL~~~a----~~~~PVilstG~~~-tl~e~~~Ave~i~~~Gn--~~i~L~~~gs~~~y~~~~~ 177 (290)
++|.++.. ++.. -+++++| .+|.||.+-++... ..- ..++++.+.|- .+++++|...+ .
T Consensus 126 ~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~~~~~---e~~~il~e~Gv~~~rvvigH~D~~-------~ 195 (308)
T PF02126_consen 126 IIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRGTRMGL---EQLDILEEEGVDPSRVVIGHMDRN-------P 195 (308)
T ss_dssp EEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTTGTCHH---HHHHHHHHTT--GGGEEETSGGGS-------T
T ss_pred heeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCCcCHH---HHHHHHHHcCCChhHeEEeCCCCC-------C
Confidence 67765544 4433 4667765 47999999998873 233 34567788874 37999998742 2
Q ss_pred CchhHHHHHhcCCCEEEeCC
Q 022892 178 DPRNLEWMREANCPVVADVT 197 (290)
Q Consensus 178 dL~~i~~lk~~~~pV~~D~s 197 (290)
|+..+..+-+.|+-|.||.=
T Consensus 196 D~~y~~~la~~G~~l~~D~~ 215 (308)
T PF02126_consen 196 DLDYHRELADRGVYLEFDTI 215 (308)
T ss_dssp -HHHHHHHHHTT-EEEETTT
T ss_pred CHHHHHHHHhcCCEEEecCC
Confidence 55556666557888888754
No 189
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=92.51 E-value=5.3 Score=40.37 Aligned_cols=214 Identities=16% Similarity=0.162 Sum_probs=119.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEecc---ccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-------eecCc
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKS---SFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT-------DVHET 97 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~---~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s-------~~~d~ 97 (290)
+.++.+..|..|-+ +|+..+=.- +|+..-| |-...-++-|+.+++...+..+-.+. ....+
T Consensus 33 ~t~d~l~ia~~ld~----~G~~siE~wGGAtfd~~~r-----fl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~yp 103 (468)
T PRK12581 33 SIEDMLPVLTILDK----IGYYSLECWGGATFDACIR-----FLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYA 103 (468)
T ss_pred CHHHHHHHHHHHHh----cCCCEEEecCCcchhhhhc-----ccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCc
Confidence 45778888888877 498876441 2331111 21111123344444444333333332 33334
Q ss_pred cc-----HHHHhh-hcceecccCCcc--CCH-HHHHHHHhcCCeEEEeCCC----CCCHHHHHHHHHHHHHcCCCcEEEE
Q 022892 98 VQ-----CEEVGK-VADIIQIPAFLC--RQT-DLLVAAAKTGKIINIKKGQ----FCASSVMVNSAEKVRLAGNPNVMVC 164 (290)
Q Consensus 98 ~~-----~~~l~~-~~d~~kIgs~~~--~n~-~lL~~~a~~~~PVilstG~----~~tl~e~~~Ave~i~~~Gn~~i~L~ 164 (290)
++ ++...+ .+|++-|..... .|. ..++.+.+.|+-+.+.-+. -.|++=+.+.++.+.+.|.+.|.|+
T Consensus 104 ddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~Ik 183 (468)
T PRK12581 104 DDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIK 183 (468)
T ss_pred chHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEC
Confidence 44 555555 588888877543 333 2334455677754332222 2366778888888888898888887
Q ss_pred eecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 165 ERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 165 ~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.-.+.. .|.. +- .-+..+|+ .++||++ +.|.. .| +...-+.+|+.+||+ +|+.-.
T Consensus 184 DtaG~l-~P~~-v~-~Lv~alk~~~~~pi~~-H~Hnt---------------~G---lA~An~laAieAGad--~vD~ai 239 (468)
T PRK12581 184 DMAGIL-TPKA-AK-ELVSGIKAMTNLPLIV-HTHAT---------------SG---ISQMTYLAAVEAGAD--RIDTAL 239 (468)
T ss_pred CCCCCc-CHHH-HH-HHHHHHHhccCCeEEE-EeCCC---------------Cc---cHHHHHHHHHHcCCC--EEEeec
Confidence 766531 2211 11 34566677 7899999 88874 13 224556789999998 788766
Q ss_pred CCCCC-------------C--CCCCCCCChHHHHHHHHHHHHHHHH
Q 022892 244 DPLNA-------------P--VDGPTQWPLRNLEELLEELVAIAKV 274 (290)
Q Consensus 244 t~dka-------------~--~D~~~sl~p~~l~~lv~~ir~~~~~ 274 (290)
.+=-. + .+...-++++.|.++-+.+++++..
T Consensus 240 ~g~g~gagN~~tE~lv~~L~~~g~~tgiDl~~L~~~a~~~~~vr~~ 285 (468)
T PRK12581 240 SPFSEGTSQPATESMYLALKEAGYDITLDETLLEQAANHLRQARQK 285 (468)
T ss_pred cccCCCcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 53110 0 1333456666665555555554443
No 190
>PTZ00066 pyruvate kinase; Provisional
Probab=92.46 E-value=2.3 Score=43.42 Aligned_cols=126 Identities=12% Similarity=0.102 Sum_probs=89.8
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC--CcEEEeecCcccHHHHhh---hcceecccCC
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD--IPIVTDVHETVQCEEVGK---VADIIQIPAF 115 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G--i~~~s~~~d~~~~~~l~~---~~d~~kIgs~ 115 (290)
+.+.+.|+|+|...+-.. .+.+..+++++.+.| +++++-+-.++.++-+.+ ..|-+-|+=+
T Consensus 217 ~f~~~~~vD~IalSFVr~--------------a~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl~~sDGIMVARG 282 (513)
T PTZ00066 217 NFAIPMGCDFIALSFVQS--------------ADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAESDGIMVARG 282 (513)
T ss_pred HHHHhcCCCEEEECCCCC--------------HHHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHHHhcCEEEEEcc
Confidence 567778999887653221 478899999998876 889999988888877766 5899999888
Q ss_pred cc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCC
Q 022892 116 LC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLI 176 (290)
Q Consensus 116 ~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~ 176 (290)
|+ -|-.+++.+-..+||||+.|-|- .|-.|+-+.+..+. .|-+-++|-.-+..-.||-
T Consensus 283 DLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~-DG~DavMLSgETA~G~yPv-- 359 (513)
T PTZ00066 283 DLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVL-DGTDCVMLSGETANGKFPV-- 359 (513)
T ss_pred ccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHH-hCCcEEEecchhcCCcCHH--
Confidence 87 34566777788999999987763 35577777776665 4666666644443323775
Q ss_pred CCchhHHHHH
Q 022892 177 VDPRNLEWMR 186 (290)
Q Consensus 177 ~dL~~i~~lk 186 (290)
.++.+|.
T Consensus 360 ---eaV~~m~ 366 (513)
T PTZ00066 360 ---EAVNIMA 366 (513)
T ss_pred ---HHHHHHH
Confidence 3555553
No 191
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=92.45 E-value=11 Score=36.57 Aligned_cols=177 Identities=16% Similarity=0.119 Sum_probs=103.0
Q ss_pred CCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE
Q 022892 13 AAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT 92 (290)
Q Consensus 13 ~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s 92 (290)
.+.++|+|..++. ..++...++. +.|+.+|-. -.| . .+. ....+-.+.|.++|+++|++|+.
T Consensus 145 ~~~~LylIT~~~~-----~ll~~l~~al----~~Gv~~VQL--R~K-~-~~~-----~~~~~~a~~L~~l~~~~~~~lII 206 (347)
T PRK02615 145 KDARLYLITSPSE-----NLLEVVEAAL----KGGVTLVQY--RDK-T-ADD-----RQRLEEAKKLKELCHRYGALFIV 206 (347)
T ss_pred ccCCEEEEECCch-----hHHHHHHHHH----HcCCCEEEE--CCC-C-CCH-----HHHHHHHHHHHHHHHHhCCeEEE
Confidence 4567999998832 2344444444 358776532 122 0 000 00124456799999999999887
Q ss_pred eecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC--
Q 022892 93 DVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM-- 169 (290)
Q Consensus 93 ~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~-- 169 (290)
.= .++.... .+|-+-+|..++.-... +..-..++-|..|+ . |++|+..|.+ .|.+.+.+-+...+
T Consensus 207 ND----~vdlAl~~~aDGVHLgq~dl~~~~a-R~llg~~~iIG~S~--H-s~~e~~~A~~----~GaDYI~lGPvf~T~t 274 (347)
T PRK02615 207 ND----RVDIALAVDADGVHLGQEDLPLAVA-RQLLGPEKIIGRST--T-NPEEMAKAIA----EGADYIGVGPVFPTPT 274 (347)
T ss_pred eC----hHHHHHHcCCCEEEeChhhcCHHHH-HHhcCCCCEEEEec--C-CHHHHHHHHH----cCCCEEEECCCcCCCC
Confidence 63 3555544 47778888776532222 22222344455555 4 8999888754 57777776544322
Q ss_pred -CCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 170 -FGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 170 -~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.++ ..+.+..+..+.+ +.+||+.= ||.. +.-.....+.|++|+.+-.-+.
T Consensus 275 Kp~~--~~~Gle~l~~~~~~~~iPv~Ai--------------------GGI~---~~ni~~l~~~Ga~gVAvisaI~ 326 (347)
T PRK02615 275 KPGK--APAGLEYLKYAAKEAPIPWFAI--------------------GGID---KSNIPEVLQAGAKRVAVVRAIM 326 (347)
T ss_pred CCCC--CCCCHHHHHHHHHhCCCCEEEE--------------------CCCC---HHHHHHHHHcCCcEEEEeHHHh
Confidence 112 2355667777776 78998651 2311 2223355688999999988774
No 192
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=92.30 E-value=1.2 Score=41.35 Aligned_cols=149 Identities=16% Similarity=0.093 Sum_probs=82.5
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCcc------------CCHHHHH---HHH-hcCCe-EEEeCCC
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLC------------RQTDLLV---AAA-KTGKI-INIKKGQ 139 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~------------~n~~lL~---~~a-~~~~P-VilstG~ 139 (290)
.|++..++-...++-++||..++..+++ .+|++.+|+... +-.+++. .+. ..+.| |+.-.+.
T Consensus 3 ~lr~l~~~~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~f 82 (254)
T cd06557 3 DLQKMKKAGEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPF 82 (254)
T ss_pred hHHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCC
Confidence 4566656666777889999999999988 699988885421 2223333 333 35678 6655542
Q ss_pred C---CCHHH-HHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEE----EeCCCCCCCCCCCccCCC
Q 022892 140 F---CASSV-MVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV----ADVTHSLQQPAGKKLDGG 211 (290)
Q Consensus 140 ~---~tl~e-~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~----~D~sHs~~~~~~~~~~~~ 211 (290)
. -++++ +.++++.+++.|-. -+=+|-+. + -...|..+.+.++||+ +.+-+.+...|..
T Consensus 83 g~y~~~~~~av~~a~r~~~~aGa~-aVkiEd~~------~--~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~----- 148 (254)
T cd06557 83 GSYQTSPEQALRNAARLMKEAGAD-AVKLEGGA------E--VAETIRALVDAGIPVMGHIGLTPQSVNQLGGYK----- 148 (254)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCe-EEEEcCcH------H--HHHHHHHHHHcCCCeeccccccceeeeccCCce-----
Confidence 2 12555 55666666667753 33444431 1 1234555555788876 3333222111110
Q ss_pred CccCCCCc----ccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 212 GVASGGLR----ELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 212 ~~~~~g~~----~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.-|+. +.+..-+++-..+||+++++|-=+
T Consensus 149 ---~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~ 181 (254)
T cd06557 149 ---VQGKTEEEAERLLEDALALEEAGAFALVLECVP 181 (254)
T ss_pred ---eccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 01211 112233444467899999999643
No 193
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=92.25 E-value=0.79 Score=48.35 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccC----CHHHHHHHH---hcCCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCR----QTDLLVAAA---KTGKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~----n~~lL~~~a---~~~~PVilstG~~~tl~ 144 (290)
.+.|+.|.++|+++|+..+.|+++.++++...+ ..+++-|-.|++. +...-..+. ..+..++-..|.. +.+
T Consensus 146 ~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~-~~~ 224 (695)
T PRK13802 146 DAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAESGVF-GAV 224 (695)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEcCCCC-CHH
Confidence 468999999999999999999999999998877 7999999999884 222112222 1245566668988 999
Q ss_pred HHHHHHH
Q 022892 145 VMVNSAE 151 (290)
Q Consensus 145 e~~~Ave 151 (290)
|+....+
T Consensus 225 d~~~l~~ 231 (695)
T PRK13802 225 EVEDYAR 231 (695)
T ss_pred HHHHHHH
Confidence 9887654
No 194
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=92.24 E-value=5.7 Score=36.44 Aligned_cols=157 Identities=13% Similarity=0.003 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhc-CCeEEEe-----CC------
Q 022892 74 EGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKT-GKIINIK-----KG------ 138 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~-~~PVils-----tG------ 138 (290)
..+..+++++++..+|+-. =+-+.++++.+.+ .++.+-||+...+|..+++++++. +--|++| .|
T Consensus 61 ~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~ 140 (243)
T TIGR01919 61 NNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLG 140 (243)
T ss_pred chHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEE
Confidence 3466788888888777544 6788888887666 699999999999999999998753 2224442 22
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCcc
Q 022892 139 ---QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVA 214 (290)
Q Consensus 139 ---~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~ 214 (290)
-.-+-.++...++.+...|-..+++.. ..+-+.- .=.|+..+..+++ .++||++-
T Consensus 141 ~~Gw~~~~~~~~~~~~~~~~~g~~~ii~td-I~~dGt~-~G~d~~l~~~l~~~~~~pvias------------------- 199 (243)
T TIGR01919 141 NRGWSDGGGDLEVLERLLDSGGCSRVVVTD-SKKDGLS-GGPNELLLEVVAARTDAIVAAS------------------- 199 (243)
T ss_pred CCCeecCCCcHHHHHHHHHhCCCCEEEEEe-cCCcccC-CCcCHHHHHHHHhhCCCCEEEE-------------------
Confidence 011233455556666777766655543 3321110 1246777788877 78999871
Q ss_pred CCCCcccHHHHHHH--HHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHH
Q 022892 215 SGGLRELIPCIART--AIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNL 261 (290)
Q Consensus 215 ~~g~~~~~~~~a~a--Ava~GA~G~~IEkH~t~dka~~D~~~sl~p~~l 261 (290)
+|.+.. ..+... ....|++|+++=+-+ |...++++|.
T Consensus 200 -GGv~s~-eDl~~l~~l~~~Gv~gvivg~Al--------~~g~i~~~~~ 238 (243)
T TIGR01919 200 -GGSSLL-DDLRAIKYLDEGGVSVAIGGKLL--------YARFFTLEAA 238 (243)
T ss_pred -CCcCCH-HHHHHHHhhccCCeeEEEEhHHH--------HcCCCCHHHH
Confidence 122211 223222 125699999998766 4445666654
No 195
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=92.18 E-value=6.5 Score=33.30 Aligned_cols=92 Identities=18% Similarity=0.150 Sum_probs=52.1
Q ss_pred HHHHHHHh---cCCeEEEeCCCCC--CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCE
Q 022892 121 DLLVAAAK---TGKIINIKKGQFC--ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPV 192 (290)
Q Consensus 121 ~lL~~~a~---~~~PVilstG~~~--tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV 192 (290)
+.++++.. .+.||++.+-... +++++...++.+...| +..+.-.+ ++.....|+..+..+++ . ++||
T Consensus 101 ~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g---~~~iK~~~--~~~~~~~~~~~~~~i~~~~~~~~~v 175 (201)
T cd00945 101 EEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAG---ADFIKTST--GFGGGGATVEDVKLMKEAVGGRVGV 175 (201)
T ss_pred HHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhC---CCEEEeCC--CCCCCCCCHHHHHHHHHhcccCCcE
Confidence 34445554 3899999875332 5778877766554433 33333222 11112246667777766 5 5677
Q ss_pred EEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 193 VADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 193 ~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
.+.+... . ......+..+||+|+++
T Consensus 176 ~~~gg~~-----------------~-----~~~~~~~~~~Ga~g~~~ 200 (201)
T cd00945 176 KAAGGIK-----------------T-----LEDALAAIEAGADGIGT 200 (201)
T ss_pred EEECCCC-----------------C-----HHHHHHHHHhccceeec
Confidence 6533222 1 34566778889999764
No 196
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=92.11 E-value=1.6 Score=41.35 Aligned_cols=76 Identities=13% Similarity=0.021 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCcEEEee----------------cCcccHHHHhh-hcceecccCCcc----------CCHHHHHHHH
Q 022892 75 GLKILEKVKIAYDIPIVTDV----------------HETVQCEEVGK-VADIIQIPAFLC----------RQTDLLVAAA 127 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi~~~s~~----------------~d~~~~~~l~~-~~d~~kIgs~~~----------~n~~lL~~~a 127 (290)
--+++.++|+++|+++..|+ .+++++..+.+ .+|++.+|=+.+ -++++|+++.
T Consensus 118 ~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~ 197 (293)
T PRK07315 118 LAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLT 197 (293)
T ss_pred HHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHH
Confidence 34457888888888875543 34444444333 577777662222 3456666665
Q ss_pred h-c-CCeEEEeCCCCCCHHHHHHHH
Q 022892 128 K-T-GKIINIKKGQFCASSVMVNSA 150 (290)
Q Consensus 128 ~-~-~~PVilstG~~~tl~e~~~Av 150 (290)
+ . +.|+++==|...+.+++..++
T Consensus 198 ~~~~~iPlVlhGGSGi~~e~~~~~i 222 (293)
T PRK07315 198 EAVPGFPIVLHGGSGIPDDQIQEAI 222 (293)
T ss_pred HhccCCCEEEECCCCCCHHHHHHHH
Confidence 4 3 366666655555555555543
No 197
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=92.05 E-value=1.7 Score=42.67 Aligned_cols=132 Identities=22% Similarity=0.157 Sum_probs=78.7
Q ss_pred HHHHHH-HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeC
Q 022892 121 DLLVAA-AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADV 196 (290)
Q Consensus 121 ~lL~~~-a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~ 196 (290)
+-|+.+ ..++.||++| |.. +.++.+.|++ .|-+-|++-..|..- .+...--+..++.+++ . .+||++|.
T Consensus 243 ~~i~~lr~~~~~pvivK-gV~-~~~dA~~a~~----~G~d~I~vsnhGGr~-~d~~~~t~~~L~ei~~~~~~~~~vi~dG 315 (383)
T cd03332 243 EDLAFLREWTDLPIVLK-GIL-HPDDARRAVE----AGVDGVVVSNHGGRQ-VDGSIAALDALPEIVEAVGDRLTVLFDS 315 (383)
T ss_pred HHHHHHHHhcCCCEEEe-cCC-CHHHHHHHHH----CCCCEEEEcCCCCcC-CCCCcCHHHHHHHHHHHhcCCCeEEEeC
Confidence 334554 4568999999 555 7888888765 577777776666531 1111112346666665 4 48998863
Q ss_pred CCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhC
Q 022892 197 THSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSK 276 (290)
Q Consensus 197 sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg 276 (290)
-=- .| ..++ .|.++||++++|-.-|--.-+ .++ ..---.-++.|.++++..-..+|
T Consensus 316 GIr----------------~G-----~Dv~-KALaLGA~~v~iGr~~l~~l~-~~G-~~gv~~~l~~l~~El~~~m~l~G 371 (383)
T cd03332 316 GVR----------------TG-----ADIM-KALALGAKAVLIGRPYAYGLA-LGG-EDGVEHVLRNLLAELDLTMGLAG 371 (383)
T ss_pred CcC----------------cH-----HHHH-HHHHcCCCEEEEcHHHHHHHH-hcc-HHHHHHHHHHHHHHHHHHHHHHC
Confidence 322 13 3455 479999999999877631100 010 00011246666777777777888
Q ss_pred Ccccccc
Q 022892 277 GKQRMNI 283 (290)
Q Consensus 277 ~~~~~~~ 283 (290)
.+++-++
T Consensus 372 ~~~i~~l 378 (383)
T cd03332 372 IRSIAEL 378 (383)
T ss_pred CCCHHHh
Confidence 8766544
No 198
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=92.01 E-value=2.3 Score=38.45 Aligned_cols=124 Identities=16% Similarity=0.129 Sum_probs=73.3
Q ss_pred CHHHHHHHHhcC--CeE-EEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-C---CCCC---CCCC--chhHHHHH
Q 022892 119 QTDLLVAAAKTG--KII-NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM-F---GYND---LIVD--PRNLEWMR 186 (290)
Q Consensus 119 n~~lL~~~a~~~--~PV-ilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~-~---~y~~---~~~d--L~~i~~lk 186 (290)
..++++++.+.+ .++ .+.++. .++ ++.....|...+.+...++. + .+.. ..++ +.++...+
T Consensus 53 ~~~~i~~l~~~~~~~~~~~l~~~~---~~~----i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~ 125 (265)
T cd03174 53 DWEVLRAIRKLVPNVKLQALVRNR---EKG----IERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAK 125 (265)
T ss_pred HHHHHHHHHhccCCcEEEEEccCc---hhh----HHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 346677777765 455 555542 333 44445567677777766651 0 0000 0111 24445555
Q ss_pred hcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHH
Q 022892 187 EANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLE 266 (290)
Q Consensus 187 ~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~ 266 (290)
+.|+.|.++...... | .-..+.+..++..+..+|++.+. ++|..-.+.|++++++++
T Consensus 126 ~~G~~v~~~~~~~~~-~------------~~~~~~l~~~~~~~~~~g~~~i~----------l~Dt~G~~~P~~v~~li~ 182 (265)
T cd03174 126 EAGLEVEGSLEDAFG-C------------KTDPEYVLEVAKALEEAGADEIS----------LKDTVGLATPEEVAELVK 182 (265)
T ss_pred HCCCeEEEEEEeecC-C------------CCCHHHHHHHHHHHHHcCCCEEE----------echhcCCcCHHHHHHHHH
Confidence 578887775544320 0 01245667788888999998432 257777899999999999
Q ss_pred HHHHHH
Q 022892 267 ELVAIA 272 (290)
Q Consensus 267 ~ir~~~ 272 (290)
.+++..
T Consensus 183 ~l~~~~ 188 (265)
T cd03174 183 ALREAL 188 (265)
T ss_pred HHHHhC
Confidence 988643
No 199
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=91.98 E-value=0.56 Score=45.33 Aligned_cols=134 Identities=18% Similarity=0.168 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc--CCcEEEeecCcccHHHHhh---hcc
Q 022892 34 RMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY--DIPIVTDVHETVQCEEVGK---VAD 108 (290)
Q Consensus 34 e~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~--Gi~~~s~~~d~~~~~~l~~---~~d 108 (290)
+.=++.++.+.+.|+|+|...+-.. .+.+..+++++.+. .+.+++-+-....++-+.+ ..|
T Consensus 176 ekD~~di~fa~~~~vD~IalSFVrs--------------a~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~~~sD 241 (348)
T PF00224_consen 176 EKDKEDIKFAVENGVDFIALSFVRS--------------AEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEILEASD 241 (348)
T ss_dssp HHHHHHHHHHHHTT-SEEEETTE-S--------------HHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHHHHSS
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCc--------------hHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHhhhcC
Confidence 3344555677778999987653221 47789999999775 5789999998888877766 488
Q ss_pred eecccCCcc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 109 IIQIPAFLC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 109 ~~kIgs~~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
.+-|+-+++ .|-.+++.+-..+|||++.|.|- .|-.|+-..+..+.. |.+-++|---++.
T Consensus 242 gimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~d-g~d~vmLs~ETa~ 320 (348)
T PF00224_consen 242 GIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLD-GADAVMLSGETAI 320 (348)
T ss_dssp EEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHH-T-SEEEESHHHHT
T ss_pred eEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHc-CCCEEEecCCcCC
Confidence 888887766 34456677778899999999883 366888888877764 6655555322222
Q ss_pred CCCCCCCCCchhHHHHHh
Q 022892 170 FGYNDLIVDPRNLEWMRE 187 (290)
Q Consensus 170 ~~y~~~~~dL~~i~~lk~ 187 (290)
-.||. .++.+|++
T Consensus 321 G~~p~-----~~v~~~~~ 333 (348)
T PF00224_consen 321 GKYPV-----EAVKTMAR 333 (348)
T ss_dssp SSSHH-----HHHHHHHH
T ss_pred CCCHH-----HHHHHHHH
Confidence 13664 46666643
No 200
>PRK13753 dihydropteroate synthase; Provisional
Probab=91.96 E-value=11 Score=35.51 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHH----HHHHHHHhcCCcEEEeecCcccHHHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLK----ILEKVKIAYDIPIVTDVHETVQCEEV 103 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~----~L~~~~~~~Gi~~~s~~~d~~~~~~l 103 (290)
+.+..++.|+++++. ||++|=-..-. |.|++ +....++.++ .++.+ .+.++++-.+-|+++.++..
T Consensus 23 ~~d~a~~~a~~m~~~----GAdIIDIGgeS----TrPga-~~vs~eeE~~Rv~pvI~~l-~~~~~~ISIDT~~~~va~~a 92 (279)
T PRK13753 23 DPAGAVTAAIEMLRV----GSDVVDVGPAA----SHPDA-RPVSPADEIRRIAPLLDAL-SDQMHRVSIDSFQPETQRYA 92 (279)
T ss_pred CHHHHHHHHHHHHHC----CCcEEEECCCC----CCCCC-CcCCHHHHHHHHHHHHHHH-HhCCCcEEEECCCHHHHHHH
Confidence 678899999999884 99998766433 22321 1111234444 23333 44588888899999999887
Q ss_pred hh-hccee-cccCCccCCHHHHHHHHhcCCeEEEeCCC--------CC--CHH----HHH----HHHHHHHHcCC-CcEE
Q 022892 104 GK-VADII-QIPAFLCRQTDLLVAAAKTGKIINIKKGQ--------FC--ASS----VMV----NSAEKVRLAGN-PNVM 162 (290)
Q Consensus 104 ~~-~~d~~-kIgs~~~~n~~lL~~~a~~~~PVilstG~--------~~--tl~----e~~----~Ave~i~~~Gn-~~i~ 162 (290)
.+ .+|++ -|.++ ++..+++.+++.+.|++|---. .. ..+ |+. .-++.+.+.|- ++=+
T Consensus 93 l~aGadiINDVsg~--~d~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~i~~~~~~Gi~~~~I 170 (279)
T PRK13753 93 LKRGVGYLNDIQGF--PDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRL 170 (279)
T ss_pred HHcCCCEEEeCCCC--CchHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCChhhE
Confidence 66 67765 45544 3667777788999999884321 10 111 222 22345666773 3446
Q ss_pred EEeecCCCCC-CCCCCC---chhHHHHHh-cCCCEEEeCC
Q 022892 163 VCERGTMFGY-NDLIVD---PRNLEWMRE-ANCPVVADVT 197 (290)
Q Consensus 163 L~~~gs~~~y-~~~~~d---L~~i~~lk~-~~~pV~~D~s 197 (290)
++.-|.-|+. .+.+-| |+.+..++. +|+||.+-.|
T Consensus 171 ilDPGiGF~k~k~~~~n~~ll~~l~~l~~~~g~PvLvg~S 210 (279)
T PRK13753 171 ILDPGMGFFLSPAPETSLHVLSNLQKLKSALGLPLLVSVS 210 (279)
T ss_pred EEeCCCCCCCCCChHHHHHHHHhHHHHHHhCCCceEEEcc
Confidence 7777765532 121223 455566665 7899866333
No 201
>PRK00208 thiG thiazole synthase; Reviewed
Probab=91.94 E-value=3.4 Score=38.33 Aligned_cols=132 Identities=12% Similarity=0.048 Sum_probs=89.7
Q ss_pred hhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHH
Q 022892 5 TALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKI 84 (290)
Q Consensus 5 ~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~ 84 (290)
..++..|.. .++.++---..+.|-+.+..+|+--.++ .|-+.||..-... +++. .....++-+.|+
T Consensus 52 ~~~~~~i~~-~~~~~lpNTaG~~ta~eAv~~a~lare~---~~~~~iKlEVi~d-~~~l---------lpd~~~tv~aa~ 117 (250)
T PRK00208 52 DNLLDLLPP-LGVTLLPNTAGCRTAEEAVRTARLAREA---LGTNWIKLEVIGD-DKTL---------LPDPIETLKAAE 117 (250)
T ss_pred chHHhhccc-cCCEECCCCCCCCCHHHHHHHHHHHHHH---hCCCeEEEEEecC-CCCC---------CcCHHHHHHHHH
Confidence 356666643 2333332222234677777777776665 4678898876542 3221 234555666667
Q ss_pred hc---CCcEE-EeecCcccHHHHhh-hcceec-----ccCC-ccCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 85 AY---DIPIV-TDVHETVQCEEVGK-VADIIQ-----IPAF-LCRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 85 ~~---Gi~~~-s~~~d~~~~~~l~~-~~d~~k-----Igs~-~~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
++ |+.++ -..-|+..+..+++ .++++- |||+ -+.|.++++.+.+ .+.||+.--|.. +++++..|.+
T Consensus 118 ~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIveaGI~-tpeda~~Ame 195 (250)
T PRK00208 118 ILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVDAGIG-TPSDAAQAME 195 (250)
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEeCCCC-CHHHHHHHHH
Confidence 77 99999 78888888888888 577663 3444 2368889988876 588999999999 9999999877
No 202
>PRK00915 2-isopropylmalate synthase; Validated
Probab=91.90 E-value=6 Score=40.26 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=79.3
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC------CCCC-CCCC--chhHHHHHhcCCC
Q 022892 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF------GYND-LIVD--PRNLEWMREANCP 191 (290)
Q Consensus 121 ~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~------~y~~-~~~d--L~~i~~lk~~~~p 191 (290)
..+++++...+..-+..-..+..++++.|++.+...|.+.+++.-..|.. +-.. +.++ ...+...|+.++.
T Consensus 56 ~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~ 135 (513)
T PRK00915 56 EAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDD 135 (513)
T ss_pred HHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 44455544333222222222368999999998888888888887766521 1111 1111 1344445556778
Q ss_pred EEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 192 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 192 V~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
|.|++-.+. .-..+++..++.++..+||+-+ .++|---.+.|.++.++++.+++.
T Consensus 136 v~f~~ed~~---------------r~d~~~l~~~~~~~~~~Ga~~i----------~l~DTvG~~~P~~~~~~i~~l~~~ 190 (513)
T PRK00915 136 VEFSAEDAT---------------RTDLDFLCRVVEAAIDAGATTI----------NIPDTVGYTTPEEFGELIKTLRER 190 (513)
T ss_pred EEEEeCCCC---------------CCCHHHHHHHHHHHHHcCCCEE----------EEccCCCCCCHHHHHHHHHHHHHh
Confidence 888655431 1125667788888899999732 237988999999999999998753
No 203
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=91.80 E-value=8.3 Score=33.68 Aligned_cols=167 Identities=16% Similarity=0.132 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccc-cccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEEe--ecCcc--cHH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSS-FDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVTD--VHETV--QCE 101 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~-~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s~--~~d~~--~~~ 101 (290)
|.+..++.++.| + .|++++...+ +. ...+++.++++++.+ +..++.+ ++|+. +++
T Consensus 10 ~~~~a~~~~~~l-~----~~v~~iev~~~l~--------------~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~ 70 (206)
T TIGR03128 10 DIEEALELAEKV-A----DYVDIIEIGTPLI--------------KNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAE 70 (206)
T ss_pred CHHHHHHHHHHc-c----cCeeEEEeCCHHH--------------HHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHH
Confidence 566666666666 3 5788777631 11 134566666666654 4556655 45776 566
Q ss_pred HHhh-hcceecccCCccC--CHHHHHHHHhcCCeEEEeC-CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-CCCCCCC
Q 022892 102 EVGK-VADIIQIPAFLCR--QTDLLVAAAKTGKIINIKK-GQFCASSVMVNSAEKVRLAGNPNVMVCERGTM-FGYNDLI 176 (290)
Q Consensus 102 ~l~~-~~d~~kIgs~~~~--n~~lL~~~a~~~~PVilst-G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~-~~y~~~~ 176 (290)
.+.+ .+|++-+....-. ...+++.+-+.|+++++.- +..-..+++..+.+ .|- +++-++-|.. ..+. .
T Consensus 71 ~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~----~g~-d~v~~~pg~~~~~~~--~ 143 (206)
T TIGR03128 71 QAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKE----LGA-DYIGVHTGLDEQAKG--Q 143 (206)
T ss_pred HHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHH----cCC-CEEEEcCCcCcccCC--C
Confidence 6666 6999887776432 2467788888999999752 43313466666543 344 4444443321 0111 1
Q ss_pred CCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 177 VDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 177 ~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
..+..+..+++ . .++|.++. ++ + ..-.......||+++++=+-+
T Consensus 144 ~~~~~i~~l~~~~~~~~i~v~G--GI----------------~-----~~n~~~~~~~Ga~~v~vGsai 189 (206)
T TIGR03128 144 NPFEDLQTILKLVKEARVAVAG--GI----------------N-----LDTIPDVIKLGPDIVIVGGAI 189 (206)
T ss_pred CCHHHHHHHHHhcCCCcEEEEC--Cc----------------C-----HHHHHHHHHcCCCEEEEeehh
Confidence 23445666666 3 34554431 11 1 233445678899999887665
No 204
>PRK05826 pyruvate kinase; Provisional
Probab=91.74 E-value=2.6 Score=42.52 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=84.7
Q ss_pred HHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc---CCcEEEeecCcccHHHHhh---hcceecccCCc
Q 022892 43 STKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY---DIPIVTDVHETVQCEEVGK---VADIIQIPAFL 116 (290)
Q Consensus 43 a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~---Gi~~~s~~~d~~~~~~l~~---~~d~~kIgs~~ 116 (290)
+-+.|++.|....-.. .+..+.++++..+. .+.+++-+-+++.++-+++ .+|.+-||-+|
T Consensus 182 ald~g~d~I~~sfV~s--------------aedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~DgImIgrgD 247 (465)
T PRK05826 182 AAEQGVDYIAVSFVRS--------------AEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDGIMVARGD 247 (465)
T ss_pred HHHCCCCEEEECCCCC--------------HHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCEEEECcch
Confidence 3447999888753331 47788888998775 4788888988888877766 59999999998
Q ss_pred c-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCC
Q 022892 117 C-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV 177 (290)
Q Consensus 117 ~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~ 177 (290)
+ -+..+++.+-+.||||++.|-|- .|-.|+-..+..+. .|.+-++|---+..-.||.
T Consensus 248 Lg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~-dG~D~vmLS~ETA~G~yPv--- 323 (465)
T PRK05826 248 LGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVL-DGTDAVMLSGETAAGKYPV--- 323 (465)
T ss_pred hhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHH-cCCcEEEeccccccCcCHH---
Confidence 7 23345566667899999986552 35566666666554 5676677754443323775
Q ss_pred CchhHHHHH
Q 022892 178 DPRNLEWMR 186 (290)
Q Consensus 178 dL~~i~~lk 186 (290)
.++.+|+
T Consensus 324 --eaV~~m~ 330 (465)
T PRK05826 324 --EAVEAMA 330 (465)
T ss_pred --HHHHHHH
Confidence 3555553
No 205
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=91.61 E-value=1.1 Score=41.24 Aligned_cols=157 Identities=13% Similarity=0.011 Sum_probs=88.3
Q ss_pred HHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
|.+..++-...++.++||..++..+++ .+|.+.+|+.... +..|.| .++.- +++|+...+..|...
T Consensus 4 ~~~~~~~~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a--------~~~G~p---D~~~v-tl~em~~~~~~I~r~- 70 (240)
T cd06556 4 LQKYKQEKERFATLTAYDYSMAKQFADAGLNVMLVGDSQGM--------TVAGYD---DTLPY-PVNDVPYHVRAVRRG- 70 (240)
T ss_pred HHHHHhCCCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHH--------HhcCCC---CCCCc-CHHHHHHHHHHHHhh-
Confidence 333334446667779999999999998 6999999996542 233666 44444 999999999988753
Q ss_pred CCc-EEEEeecCCCCCCC-CCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCC
Q 022892 158 NPN-VMVCERGTMFGYND-LIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 235 (290)
Q Consensus 158 n~~-i~L~~~gs~~~y~~-~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~ 235 (290)
.+. .++...-+-| |.. +.+ .+++..+-+.|.. ++ |- .++.+++. ...++++.|.
T Consensus 71 ~~~~pviaD~~~G~-g~~~~~~-~~~~~~l~~aGa~-gv---~i----------------ED~~~~~~-~i~ai~~a~i- 126 (240)
T cd06556 71 APLALIVADLPFGA-YGAPTAA-FELAKTFMRAGAA-GV---KI----------------EGGEWHIE-TLQMLTAAAV- 126 (240)
T ss_pred CCCCCEEEeCCCCC-CcCHHHH-HHHHHHHHHcCCc-EE---EE----------------cCcHHHHH-HHHHHHHcCC-
Confidence 332 3455544322 111 111 1223333234432 11 11 12122222 2334455564
Q ss_pred EEEEeeeCCCCCC----CC-CCCCCCChHHHHHHHHHHHHHHHH
Q 022892 236 GVFMEVHDDPLNA----PV-DGPTQWPLRNLEELLEELVAIAKV 274 (290)
Q Consensus 236 G~~IEkH~t~dka----~~-D~~~sl~p~~l~~lv~~ir~~~~~ 274 (290)
+|=-|.....+ .. +..+-.+.+++++++++.+..+++
T Consensus 127 --~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~A 168 (240)
T cd06556 127 --PVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPA 168 (240)
T ss_pred --eEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHc
Confidence 44477654221 11 333444577899999998888775
No 206
>PTZ00081 enolase; Provisional
Probab=91.58 E-value=2.7 Score=42.01 Aligned_cols=94 Identities=18% Similarity=0.175 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh---c-ceecccCCc--cCCHHHHHHHHhcC--CeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV---A-DIIQIPAFL--CRQTDLLVAAAKTG--KIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~---~-d~~kIgs~~--~~n~~lL~~~a~~~--~PVilstG~~~tl~ 144 (290)
.+..+.+.+.+++++|.++=+|+.+++.+-+.++ + +-..|...+ ++|...++..-..+ --|.+|-++.+++.
T Consensus 284 ~eli~~~~~~l~~y~I~~IEDPl~~~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGIT 363 (439)
T PTZ00081 284 EELVELYLDLVKKYPIVSIEDPFDQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVT 363 (439)
T ss_pred HHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHH
Confidence 4566778899999999999999999888777663 4 123444444 47787766654433 36888999988999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeec
Q 022892 145 VMVNSAEKVRLAGNPNVMVCERG 167 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~g 167 (290)
|+.++++..+..|- .+++-||.
T Consensus 364 e~l~~a~lA~~~Gi-~~iishrs 385 (439)
T PTZ00081 364 EAIEAAKLAQKNGW-GVMVSHRS 385 (439)
T ss_pred HHHHHHHHHHHcCC-cEEEeCCC
Confidence 99999998887753 57777874
No 207
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=91.46 E-value=0.76 Score=43.22 Aligned_cols=74 Identities=9% Similarity=0.050 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCcEEE-----------------eecCcccHHHHhh--hcceecccCCcc---------CCHHHHHHHH
Q 022892 76 LKILEKVKIAYDIPIVT-----------------DVHETVQCEEVGK--VADIIQIPAFLC---------RQTDLLVAAA 127 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s-----------------~~~d~~~~~~l~~--~~d~~kIgs~~~---------~n~~lL~~~a 127 (290)
-+.+.++|+++|+.+-. +..+++++....+ .+|++-++-+.+ -++++|+++.
T Consensus 117 t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~ 196 (282)
T TIGR01859 117 TKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIK 196 (282)
T ss_pred HHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHH
Confidence 45688899999998873 3445555554443 577777432221 3455555554
Q ss_pred h-cCCeEEEeCCCCCCHHHHHHH
Q 022892 128 K-TGKIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 128 ~-~~~PVilstG~~~tl~e~~~A 149 (290)
+ .+.|+.+=-|...+.+++..+
T Consensus 197 ~~~~iPlv~hGgSGi~~e~i~~~ 219 (282)
T TIGR01859 197 ELTNIPLVLHGASGIPEEQIKKA 219 (282)
T ss_pred HHhCCCEEEECCCCCCHHHHHHH
Confidence 3 355665555444445555444
No 208
>PLN02461 Probable pyruvate kinase
Probab=91.44 E-value=3.6 Score=42.03 Aligned_cols=126 Identities=14% Similarity=0.092 Sum_probs=88.9
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC--CcEEEeecCcccHHHHhh---hcceecccCC
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD--IPIVTDVHETVQCEEVGK---VADIIQIPAF 115 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G--i~~~s~~~d~~~~~~l~~---~~d~~kIgs~ 115 (290)
+.+.+.|+|.|...+-.. .+.+..+++++.+.| +++++-+-.++.++-+.+ ..|-+-|+=+
T Consensus 201 ~f~~~~~vD~ia~SFVr~--------------a~DV~~~r~~l~~~~~~~~IiAKIE~~~av~nl~eIi~~sDgIMVARG 266 (511)
T PLN02461 201 QWGVPNKIDFIALSFVRK--------------GSDLVEVRKVLGEHAKSILLISKVENQEGLDNFDDILAESDAFMVARG 266 (511)
T ss_pred HHHhhcCCCEEEECCCCC--------------HHHHHHHHHHHHhCCCCCCEEEEECCHHHHHHHHHHHHhcCEEEEecc
Confidence 456677999887653221 467888999987654 789999988888887776 5899999988
Q ss_pred cc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCC
Q 022892 116 LC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLI 176 (290)
Q Consensus 116 ~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~ 176 (290)
|+ .|-.+++.+-..+||||+.|-|- .|-.|+-..+..+. .|-+-++|-.-+..-.||.
T Consensus 267 DLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~-dG~D~vMLS~ETA~G~yPv-- 343 (511)
T PLN02461 267 DLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVL-DGTDCVMLSGETAAGAYPE-- 343 (511)
T ss_pred ccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHH-hCCcEEEEechhcCCCCHH--
Confidence 87 34466777788999999987663 35577777777665 4666677754444323775
Q ss_pred CCchhHHHHH
Q 022892 177 VDPRNLEWMR 186 (290)
Q Consensus 177 ~dL~~i~~lk 186 (290)
.++.+|+
T Consensus 344 ---eaV~~m~ 350 (511)
T PLN02461 344 ---LAVKTMA 350 (511)
T ss_pred ---HHHHHHH
Confidence 3555553
No 209
>PRK06354 pyruvate kinase; Provisional
Probab=91.44 E-value=2.1 Score=44.35 Aligned_cols=127 Identities=13% Similarity=0.144 Sum_probs=87.9
Q ss_pred HHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh---cCCcEEEeecCcccHHHHhh---hcceeccc
Q 022892 40 KSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA---YDIPIVTDVHETVQCEEVGK---VADIIQIP 113 (290)
Q Consensus 40 ~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~---~Gi~~~s~~~d~~~~~~l~~---~~d~~kIg 113 (290)
++.+.+.|+|.|...+-.. .+.+..++++..+ ..+.+++-+-..+.++-+.+ .+|.+-||
T Consensus 184 i~f~~~~~vD~ia~SFVr~--------------~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~~DgImVa 249 (590)
T PRK06354 184 LIFGLEQGVDWIALSFVRN--------------PSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILELCDGLMVA 249 (590)
T ss_pred HHHHHHcCCCEEEEcCCCC--------------HHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEEc
Confidence 4566678999887653221 4678888888843 35789999988888777766 59999999
Q ss_pred CCcc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC
Q 022892 114 AFLC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 114 s~~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~ 174 (290)
-+|+ .|..+++.+-+.|||||+.|-|- .|=.|+-+.+..+. .|.+-++|..-+..-.||-
T Consensus 250 RGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~-DG~DavMLS~ETA~G~yPv 328 (590)
T PRK06354 250 RGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAIL-DGTDAVMLSNETAAGDYPV 328 (590)
T ss_pred cchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhh-hCCcEEEecccccCCCCHH
Confidence 9988 34456677788999999988763 24466666666555 5776677755544324775
Q ss_pred CCCCchhHHHHH
Q 022892 175 LIVDPRNLEWMR 186 (290)
Q Consensus 175 ~~~dL~~i~~lk 186 (290)
.++.+|+
T Consensus 329 -----eaV~~m~ 335 (590)
T PRK06354 329 -----EAVQTMA 335 (590)
T ss_pred -----HHHHHHH
Confidence 4555554
No 210
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=91.39 E-value=2 Score=42.03 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccC-CCCChhHHHHHHHHHHHhcCCcEEE-eecCcccHHHHhh-h
Q 022892 30 EHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSF-RGPGMVEGLKILEKVKIAYDIPIVT-DVHETVQCEEVGK-V 106 (290)
Q Consensus 30 ~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~-~g~~~~~~l~~L~~~~~~~Gi~~~s-~~~d~~~~~~l~~-~ 106 (290)
....++++.+.+ +|+++|... .||....| .+.+ .+..+.+++++.++|++. .+.+.+.+..+.+ .
T Consensus 142 ~~~~e~a~~l~e----AGad~I~ih-----grt~~q~~~sg~~---~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aG 209 (369)
T TIGR01304 142 QNAREIAPIVVK----AGADLLVIQ-----GTLVSAEHVSTSG---EPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTG 209 (369)
T ss_pred cCHHHHHHHHHH----CCCCEEEEe-----ccchhhhccCCCC---CHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcC
Confidence 345566666655 699988764 44432223 1212 255688888999999998 8999998887776 7
Q ss_pred cceecccCCcc---C-----CHH---HHHHHH--------hcC---CeEEEeCCCCCCHHHHHHHHH
Q 022892 107 ADIIQIPAFLC---R-----QTD---LLVAAA--------KTG---KIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 107 ~d~~kIgs~~~---~-----n~~---lL~~~a--------~~~---~PVilstG~~~tl~e~~~Ave 151 (290)
+|.+.+|..-. + ..+ .+..++ .++ .|||-.=|.. +..++..|+.
T Consensus 210 aDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~-tg~di~kAlA 275 (369)
T TIGR01304 210 AAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIE-TSGDLVKAIA 275 (369)
T ss_pred CCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCC-CHHHHHHHHH
Confidence 99988774321 1 123 222222 123 7999999998 9999888864
No 211
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=91.36 E-value=5.8 Score=38.31 Aligned_cols=151 Identities=15% Similarity=0.103 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCcc------------CCHHHH---HHHHh-cCCeEEE---
Q 022892 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLC------------RQTDLL---VAAAK-TGKIINI--- 135 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~------------~n~~lL---~~~a~-~~~PVil--- 135 (290)
+..|++..++-.-.++.|.||..++..+++ .+|++-||+... +=-+++ +++.+ ...|+++
T Consensus 24 i~~l~~~k~~g~kivmlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDm 103 (332)
T PLN02424 24 LRTLRQKYRRGEPITMVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDL 103 (332)
T ss_pred HHHHHHHHhCCCcEEEEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCC
Confidence 555666544444567779999999999998 699999999853 111233 44443 5778877
Q ss_pred eCCCC-CCHHHHHHHHHHH-HHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEE----EeCCCCCCCCCCCccC
Q 022892 136 KKGQF-CASSVMVNSAEKV-RLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV----ADVTHSLQQPAGKKLD 209 (290)
Q Consensus 136 stG~~-~tl~e~~~Ave~i-~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~----~D~sHs~~~~~~~~~~ 209 (290)
.-|.. .++++....+..+ ++.|. +.+=+|.|+. . ....+..|-+.|+||+ +.+-+.+..-|+
T Consensus 104 PfgSY~~s~e~av~nA~rl~~eaGa-~aVKlEGg~~-----~--~~~~I~~l~~~GIPV~gHiGLtPQs~~~lGGy---- 171 (332)
T PLN02424 104 PFGSYESSTDQAVESAVRMLKEGGM-DAVKLEGGSP-----S--RVTAAKAIVEAGIAVMGHVGLTPQAISVLGGF---- 171 (332)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCC-cEEEECCCcH-----H--HHHHHHHHHHcCCCEEEeecccceeehhhcCc----
Confidence 34422 3676655544444 55654 5666776631 0 1245555655799987 544433211110
Q ss_pred CCCccCCCCc-c---cHHHHHHHHHHcCCCEEEEeee
Q 022892 210 GGGVASGGLR-E---LIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 210 ~~~~~~~g~~-~---~~~~~a~aAva~GA~G~~IEkH 242 (290)
.--|+. + .+..-+++-.++||.++++|-=
T Consensus 172 ----kvqGr~~~~a~~li~dA~ale~AGAf~ivLE~V 204 (332)
T PLN02424 172 ----RPQGRTAESAVKVVETALALQEAGCFAVVLECV 204 (332)
T ss_pred ----cccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCC
Confidence 001211 1 2333444555789999999963
No 212
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=91.32 E-value=3.9 Score=37.29 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=48.0
Q ss_pred hcceecc------cCCccCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC
Q 022892 106 VADIIQI------PAFLCRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD 178 (290)
Q Consensus 106 ~~d~~kI------gs~~~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d 178 (290)
.++.+-+ |...-.|+++++++.+ .+.||+.+-|.. +++++..+.+. .|-.-++ .|+.+.+. .++
T Consensus 166 g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~-s~~d~~~~~~~---~G~~gvi---vg~al~~~--~~~ 236 (253)
T PRK02083 166 GAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAG-NLEHFVEAFTE---GGADAAL---AASIFHFG--EIT 236 (253)
T ss_pred CCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHh---CCccEEe---EhHHHHcC--CCC
Confidence 3665544 3334468899988765 589999999999 99999886542 3433333 33332111 234
Q ss_pred chh-HHHHHhcCCCE
Q 022892 179 PRN-LEWMREANCPV 192 (290)
Q Consensus 179 L~~-i~~lk~~~~pV 192 (290)
+.. ...|+++|++|
T Consensus 237 ~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 237 IGELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHHHCCCcc
Confidence 444 45566678776
No 213
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=91.26 E-value=4.7 Score=37.65 Aligned_cols=150 Identities=15% Similarity=0.108 Sum_probs=85.7
Q ss_pred HHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCc------------cCCHHHH---HHHHh-cCCe-EEEeC
Q 022892 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFL------------CRQTDLL---VAAAK-TGKI-INIKK 137 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~------------~~n~~lL---~~~a~-~~~P-Vilst 137 (290)
+..|++..++-...++-++||..++..+++ .+|++.+|+.. ++-.+++ +.+.+ ++.| |+.-.
T Consensus 4 ~~~lr~~~~~g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~ 83 (264)
T PRK00311 4 ISDLQKMKQEGEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADM 83 (264)
T ss_pred HHHHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeC
Confidence 345666655556777889999999999988 69999888442 1222333 33333 4555 66666
Q ss_pred CCC---CCHHH-HHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEE----EeCCCCCCCCCCCccC
Q 022892 138 GQF---CASSV-MVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV----ADVTHSLQQPAGKKLD 209 (290)
Q Consensus 138 G~~---~tl~e-~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~----~D~sHs~~~~~~~~~~ 209 (290)
+.. .++++ +.+++..+++.|- .-+=+|-+. + -...|..+.+.++||+ +.+-+.+...|.
T Consensus 84 pfg~y~~~~~~av~~a~r~~~~aGa-~aVkiEdg~------~--~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~---- 150 (264)
T PRK00311 84 PFGSYQASPEQALRNAGRLMKEAGA-HAVKLEGGE------E--VAETIKRLVERGIPVMGHLGLTPQSVNVLGGY---- 150 (264)
T ss_pred CCCCccCCHHHHHHHHHHHHHHhCC-eEEEEcCcH------H--HHHHHHHHHHCCCCEeeeecccceeecccCCe----
Confidence 522 24566 6777887776775 344445431 1 1234555656789985 333332211111
Q ss_pred CCCccCCCCcc----cHHHHHHHHHHcCCCEEEEeee
Q 022892 210 GGGVASGGLRE----LIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 210 ~~~~~~~g~~~----~~~~~a~aAva~GA~G~~IEkH 242 (290)
..-|+.+ .+..-+++-..+||+++++|-=
T Consensus 151 ----~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v 183 (264)
T PRK00311 151 ----KVQGRDEEAAEKLLEDAKALEEAGAFALVLECV 183 (264)
T ss_pred ----eeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 0112111 1223344445789999999954
No 214
>PRK00915 2-isopropylmalate synthase; Validated
Probab=91.25 E-value=18 Score=36.91 Aligned_cols=100 Identities=11% Similarity=0.047 Sum_probs=66.3
Q ss_pred HHHHHHHhcCCeEEEeC--CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cC----CCEE
Q 022892 121 DLLVAAAKTGKIINIKK--GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN----CPVV 193 (290)
Q Consensus 121 ~lL~~~a~~~~PVilst--G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~----~pV~ 193 (290)
+.++++...+.-|.++- +.-.+++.+...++.+...|-..|.||..... -.|.. + .+-+..+++ +. +|++
T Consensus 124 ~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~-~~P~~-~-~~~i~~l~~~~~~~~~v~l~ 200 (513)
T PRK00915 124 EAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGY-TTPEE-F-GELIKTLRERVPNIDKAIIS 200 (513)
T ss_pred HHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCC-CCHHH-H-HHHHHHHHHhCCCcccceEE
Confidence 44556666788888776 44447888888888888889877777776553 12321 1 145566766 54 7898
Q ss_pred EeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 194 ~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+ +.|-. ..+...-+.+|+.+||+ .|+.-+.
T Consensus 201 ~-H~HND------------------~GlAvANslaAv~aGa~--~Vd~Tv~ 230 (513)
T PRK00915 201 V-HCHND------------------LGLAVANSLAAVEAGAR--QVECTIN 230 (513)
T ss_pred E-EecCC------------------CCHHHHHHHHHHHhCCC--EEEEEee
Confidence 8 77752 22334557789999998 7776554
No 215
>PRK08185 hypothetical protein; Provisional
Probab=91.21 E-value=2.3 Score=40.08 Aligned_cols=104 Identities=15% Similarity=0.076 Sum_probs=0.0
Q ss_pred ecccCCccCCHH----HHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHH
Q 022892 110 IQIPAFLCRQTD----LLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWM 185 (290)
Q Consensus 110 ~kIgs~~~~n~~----lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~l 185 (290)
|.||++++.|.+ +++++-..+.||||..... +.. |.... -...+..+
T Consensus 13 yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~-~~~---------------------------~~~~~-~~~~~~~~ 63 (283)
T PRK08185 13 FAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPN-ELD---------------------------FLGDN-FFAYVRER 63 (283)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcc-hhh---------------------------hccHH-HHHHHHHH
Q ss_pred Hh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe-eeCCCCCCCCCCCCCCChHHHHH
Q 022892 186 RE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME-VHDDPLNAPVDGPTQWPLRNLEE 263 (290)
Q Consensus 186 k~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE-kH~t~dka~~D~~~sl~p~~l~~ 263 (290)
.+ ..+||.+--||+. . ......|+..|.+.+|+- ||. +.+|.-+
T Consensus 64 a~~~~vPV~lHLDHg~----------------~-----~e~i~~ai~~Gf~SVM~D~S~l-------------~~eeNi~ 109 (283)
T PRK08185 64 AKRSPVPFVIHLDHGA----------------T-----IEDVMRAIRCGFTSVMIDGSLL-------------PYEENVA 109 (283)
T ss_pred HHHCCCCEEEECCCCC----------------C-----HHHHHHHHHcCCCEEEEeCCCC-------------CHHHHHH
Q ss_pred HHHHHHHHHHHhC
Q 022892 264 LLEELVAIAKVSK 276 (290)
Q Consensus 264 lv~~ir~~~~~lg 276 (290)
+.+.+.++-...|
T Consensus 110 ~t~~vv~~a~~~g 122 (283)
T PRK08185 110 LTKEVVELAHKVG 122 (283)
T ss_pred HHHHHHHHHHHcC
No 216
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.84 E-value=13 Score=33.96 Aligned_cols=185 Identities=15% Similarity=0.059 Sum_probs=111.0
Q ss_pred hHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHH-HHH
Q 022892 6 ALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEK-VKI 84 (290)
Q Consensus 6 ~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~-~~~ 84 (290)
.++..+. ..+++-|.- .++.+...++++.|++ .|+.++-.. | +..+-.+.++.|++ +.+
T Consensus 7 ~~~~~l~-~~~vi~Vvr---~~~~~~a~~~~~al~~----gGi~~iEiT-~-----------~tp~a~~~i~~l~~~~~~ 66 (222)
T PRK07114 7 AVLTAMK-ATGMVPVFY---HADVEVAKKVIKACYD----GGARVFEFT-N-----------RGDFAHEVFAELVKYAAK 66 (222)
T ss_pred HHHHHHH-hCCEEEEEE---cCCHHHHHHHHHHHHH----CCCCEEEEe-C-----------CCCcHHHHHHHHHHHHHh
Confidence 4555554 344443322 2366788888888887 588876442 1 11111355666653 334
Q ss_pred hcC-CcEEE-eecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 85 AYD-IPIVT-DVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 85 ~~G-i~~~s-~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
++. +.+-+ |+.++++++...+ ..+|+-=+. .|.++++.+-+.+.|++ =|.. |+.|+..|.+ .|.+-+
T Consensus 67 ~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~---~~~~v~~~~~~~~i~~i--PG~~-TpsEi~~A~~----~Ga~~v 136 (222)
T PRK07114 67 ELPGMILGVGSIVDAATAALYIQLGANFIVTPL---FNPDIAKVCNRRKVPYS--PGCG-SLSEIGYAEE----LGCEIV 136 (222)
T ss_pred hCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCC---CCHHHHHHHHHcCCCEe--CCCC-CHHHHHHHHH----CCCCEE
Confidence 443 44444 9999999998877 677776664 68899999988898876 4666 9999999865 566444
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
=| ||.....+..+..|+. | +++++ ++=++ ... ..-...-.++|+.++-+
T Consensus 137 Kl--------FPA~~~G~~~ikal~~p~p~i~~~--ptGGV-------------~~~------~~n~~~yl~aGa~avg~ 187 (222)
T PRK07114 137 KL--------FPGSVYGPGFVKAIKGPMPWTKIM--PTGGV-------------EPT------EENLKKWFGAGVTCVGM 187 (222)
T ss_pred EE--------CcccccCHHHHHHHhccCCCCeEE--eCCCC-------------Ccc------hhcHHHHHhCCCEEEEE
Confidence 44 3433344556666666 4 45554 33222 110 00122335578887777
Q ss_pred eeeCCCCCCC
Q 022892 240 EVHDDPLNAP 249 (290)
Q Consensus 240 EkH~t~dka~ 249 (290)
=+-+.+.+..
T Consensus 188 Gs~L~~~~~~ 197 (222)
T PRK07114 188 GSKLIPKEAL 197 (222)
T ss_pred ChhhcCcccc
Confidence 7777665443
No 217
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.81 E-value=12 Score=33.62 Aligned_cols=129 Identities=17% Similarity=0.211 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEEE-eecCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIVT-DVHETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~s-~~~d~~~~~~l~~ 105 (290)
+.+..++.++.|++ .|+.++-.. |+ + ...++.++++.++++ +.+-+ |+.++++++...+
T Consensus 14 ~~~~a~~ia~al~~----gGi~~iEit-~~-----t---------p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~ 74 (201)
T PRK06015 14 DVEHAVPLARALAA----GGLPAIEIT-LR-----T---------PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAK 74 (201)
T ss_pred CHHHHHHHHHHHHH----CCCCEEEEe-CC-----C---------ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHH
Confidence 66788888888888 588876442 11 1 234455555555544 44444 9999999998877
Q ss_pred -hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC-chhHH
Q 022892 106 -VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD-PRNLE 183 (290)
Q Consensus 106 -~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d-L~~i~ 183 (290)
..+|+-=+. .|.++++.+-+.++|++ -|.+ |+.|+..|.+ .|-+-+=+ ||...+. ..-+.
T Consensus 75 aGA~FivSP~---~~~~vi~~a~~~~i~~i--PG~~-TptEi~~A~~----~Ga~~vK~--------FPa~~~GG~~yik 136 (201)
T PRK06015 75 AGSRFIVSPG---TTQELLAAANDSDVPLL--PGAA-TPSEVMALRE----EGYTVLKF--------FPAEQAGGAAFLK 136 (201)
T ss_pred cCCCEEECCC---CCHHHHHHHHHcCCCEe--CCCC-CHHHHHHHHH----CCCCEEEE--------CCchhhCCHHHHH
Confidence 688776664 68899999888898876 4766 9999999865 56644444 4443342 45677
Q ss_pred HHHh-c-CCCEE
Q 022892 184 WMRE-A-NCPVV 193 (290)
Q Consensus 184 ~lk~-~-~~pV~ 193 (290)
.|+. + ++|++
T Consensus 137 al~~plp~~~l~ 148 (201)
T PRK06015 137 ALSSPLAGTFFC 148 (201)
T ss_pred HHHhhCCCCcEE
Confidence 7777 4 56664
No 218
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=90.66 E-value=4.6 Score=39.74 Aligned_cols=95 Identities=18% Similarity=0.133 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHhc-CCcEEEeecCc---ccHHH----Hhh-hcceecc--cC------Cc-----cCCHHHHHHH---
Q 022892 72 MVEGLKILEKVKIAY-DIPIVTDVHET---VQCEE----VGK-VADIIQI--PA------FL-----CRQTDLLVAA--- 126 (290)
Q Consensus 72 ~~~~l~~L~~~~~~~-Gi~~~s~~~d~---~~~~~----l~~-~~d~~kI--gs------~~-----~~n~~lL~~~--- 126 (290)
++..++++.++.+++ .+|++.+++.. ++... +++ .+|++-+ +. +. .++.++++++
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~ 176 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGW 176 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHH
Confidence 455677777776777 68999999653 32222 223 2566653 11 11 2566666443
Q ss_pred -Hh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 022892 127 -AK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 127 -a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
-+ +.+||++|-+.. +.++.+.++.+.+.|-+-|+++.+..
T Consensus 177 Vk~~~~iPv~vKLsPn--~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 177 INAKATVPVWAKMTPN--ITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred HHHhhcCceEEEeCCC--hhhHHHHHHHHHHhCCCEEEEecccC
Confidence 32 579999999965 66788888888888887777777653
No 219
>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 3NUD_A 3KGF_A 2W19_A 3NUE_B 3PFP_A 2B7O_B 3RZI_A 3NV8_B 2W1A_A.
Probab=90.52 E-value=1 Score=44.72 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=48.8
Q ss_pred ceecccCCccC-CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CcEEEEeecCCCCCCCCCCCchhHHHH
Q 022892 108 DIIQIPAFLCR-QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGN-PNVMVCERGTMFGYNDLIVDPRNLEWM 185 (290)
Q Consensus 108 d~~kIgs~~~~-n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn-~~i~L~~~gs~~~y~~~~~dL~~i~~l 185 (290)
.+++||-|+-+ +-..++.+++..=||.+|-|.+++++|+..-++.+--... .++.|+-|=. ... +. ..+|.|
T Consensus 259 H~~WIGeRTRq~dgAHve~~~gi~NPigvKvGP~~~~~~l~~l~~~LnP~~~pGRltlI~RmG---a~~--v~-~~LP~l 332 (439)
T PF01474_consen 259 HFLWIGERTRQLDGAHVEFLRGIANPIGVKVGPSMTPEELVELCDRLNPDNEPGRLTLITRMG---ADK--VR-ERLPPL 332 (439)
T ss_dssp SEEEE-TTT--TTSHHHHHHHHB-S-EEEEE-TT--HHHHHHHHHHHSTT--TTSEEEEE------TTT--HH-HHHHHH
T ss_pred ceeeecccccCCchhHHHHHhhccCccceeeCCCCCHHHHHHHHHHhCCCCCCCeEEEEecCC---cHH--HH-HHhHHH
Confidence 37899988653 3355677888888999999999999999999988732111 2599988833 222 22 233333
Q ss_pred ----HhcCCCEEE--eCCCCC
Q 022892 186 ----REANCPVVA--DVTHSL 200 (290)
Q Consensus 186 ----k~~~~pV~~--D~sHs~ 200 (290)
++.|.||++ |+=|+|
T Consensus 333 i~aV~~~g~~vvW~cDPMHGN 353 (439)
T PF01474_consen 333 IEAVQAAGHPVVWSCDPMHGN 353 (439)
T ss_dssp HHHHHTTT---EEEE-TSTTS
T ss_pred HHHHHHCCCceEEeccCCCCC
Confidence 447888877 777986
No 220
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=90.51 E-value=1.7 Score=41.08 Aligned_cols=86 Identities=21% Similarity=0.230 Sum_probs=58.5
Q ss_pred eecccCCccCCHHHH----HHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCc-hhHH
Q 022892 109 IIQIPAFLCRQTDLL----VAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDP-RNLE 183 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL----~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL-~~i~ 183 (290)
=|.||+++++|.+.+ +++...+-||||..... +++++- | |. ++ ..+.
T Consensus 17 ~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g--------~~~y~g--g--------------~~----~~~~~v~ 68 (286)
T COG0191 17 GYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEG--------AAKYAG--G--------------AD----SLAHMVK 68 (286)
T ss_pred CCceeeeeecCHHHHHHHHHHHHHhCCCEEEEeccc--------HHHHhc--h--------------HH----HHHHHHH
Confidence 478999999998755 45667889999988876 223221 1 11 11 2333
Q ss_pred HHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe-eeC
Q 022892 184 WMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME-VHD 243 (290)
Q Consensus 184 ~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE-kH~ 243 (290)
.+.+ +++||.+--||+. . ......|+..|-.-+||. +|+
T Consensus 69 ~~a~~~~vPV~lHlDHg~----------------~-----~~~~~~ai~~GFsSvMiDgS~~ 109 (286)
T COG0191 69 ALAEKYGVPVALHLDHGA----------------S-----FEDCKQAIRAGFSSVMIDGSHL 109 (286)
T ss_pred HHHHHCCCCEEEECCCCC----------------C-----HHHHHHHHhcCCceEEecCCcC
Confidence 4444 7899999888983 3 566778899998888876 554
No 221
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=90.45 E-value=1 Score=44.84 Aligned_cols=91 Identities=16% Similarity=0.082 Sum_probs=61.9
Q ss_pred cceecccCCccC-CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CcEEEEeecCCCCCCC-CCCCchhHH
Q 022892 107 ADIIQIPAFLCR-QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGN-PNVMVCERGTMFGYND-LIVDPRNLE 183 (290)
Q Consensus 107 ~d~~kIgs~~~~-n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn-~~i~L~~~gs~~~y~~-~~~dL~~i~ 183 (290)
..|++||-|+-+ +-..++.+.+..=||.+|-|..++++|+.+-++.+--..- -++.|+-|=. ... .+.=..-|.
T Consensus 255 aH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~~p~~l~~L~~~LnP~~epGRlTLI~RmG---a~kV~~~LP~li~ 331 (443)
T TIGR01358 255 AHMLWIGERTRQLDGAHVEFLRGVRNPIGIKVGPSMTPDELLRLIERLNPENEPGRLTLISRMG---ADKIADKLPPLLR 331 (443)
T ss_pred ccccccccccCCCCchHHHHHhcCCCCeeEEECCCCCHHHHHHHHHHhCCCCCCceEEEEeccC---chHHHHhHHHHHH
Confidence 457889988764 4455677778888999999999999999999988732211 1588988843 221 011112334
Q ss_pred HHHhcCCCEEE--eCCCCC
Q 022892 184 WMREANCPVVA--DVTHSL 200 (290)
Q Consensus 184 ~lk~~~~pV~~--D~sHs~ 200 (290)
..++.|.||++ |+=|+|
T Consensus 332 aV~~~G~~VvW~cDPMHGN 350 (443)
T TIGR01358 332 AVKAAGRRVVWVCDPMHGN 350 (443)
T ss_pred HHHHcCCceEEeecCCCCC
Confidence 44557889987 666987
No 222
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=90.37 E-value=0.91 Score=45.48 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=61.9
Q ss_pred cceecccCCccC-CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CcEEEEeecCCCCCCC-CCCCchhHH
Q 022892 107 ADIIQIPAFLCR-QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGN-PNVMVCERGTMFGYND-LIVDPRNLE 183 (290)
Q Consensus 107 ~d~~kIgs~~~~-n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn-~~i~L~~~gs~~~y~~-~~~dL~~i~ 183 (290)
..|++||-|+-+ +-..++.+.+..=||.+|-|.+++++|+..-++.+--..- -++.|+-|=. ... .+.=..-|.
T Consensus 275 aH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGPs~~pdel~~L~~~LnP~~epGRlTLI~RmG---a~kV~~~LP~Li~ 351 (474)
T PLN02291 275 AHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPEELVKLIEILNPQNKPGRLTIIVRMG---AEKLRVKLPHLIR 351 (474)
T ss_pred ccccccccccCCCCccHHHHHhcCCCCeeEEECCCCCHHHHHHHHHHhCCCCCCceEEEEeccc---hHHHHHHHHHHHH
Confidence 457889988764 4455677788888999999999999999999988732211 2588888843 221 011112334
Q ss_pred HHHhcCCCEEE--eCCCCC
Q 022892 184 WMREANCPVVA--DVTHSL 200 (290)
Q Consensus 184 ~lk~~~~pV~~--D~sHs~ 200 (290)
..++.|.||++ |+=|+|
T Consensus 352 aV~~~G~~VvW~cDPMHGN 370 (474)
T PLN02291 352 AVRRAGQIVTWVSDPMHGN 370 (474)
T ss_pred HHHHcCCceEEeecCCCCC
Confidence 44557889987 666987
No 223
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=90.24 E-value=4 Score=41.61 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=72.6
Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC------CCCC-CCCC--chhHHHHHhcCCC-EEEeCCCCCC
Q 022892 132 IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF------GYND-LIVD--PRNLEWMREANCP-VVADVTHSLQ 201 (290)
Q Consensus 132 PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~------~y~~-~~~d--L~~i~~lk~~~~p-V~~D~sHs~~ 201 (290)
|.+..-+.. ..++++.|++.+...|.+.+++.-..|.. +-.. +.++ ...+...|+.|+. |.|.+-.+-
T Consensus 157 ~~i~a~~R~-~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~- 234 (503)
T PLN03228 157 PVICGIARC-KKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGG- 234 (503)
T ss_pred eEEeeeccc-CHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecccccc-
Confidence 566655666 77899999998776677778777655521 1111 1111 1233344545664 666442220
Q ss_pred CCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 202 QPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
.-..+++..++.++..+||+.+ . ++|.--.+.|.++.++++.+++-
T Consensus 235 --------------Rtd~efl~~~~~~a~~~Gad~I----~------l~DTvG~~tP~~v~~lV~~l~~~ 280 (503)
T PLN03228 235 --------------RSDKEFLCKILGEAIKAGATSV----G------IADTVGINMPHEFGELVTYVKAN 280 (503)
T ss_pred --------------ccCHHHHHHHHHHHHhcCCCEE----E------EecCCCCCCHHHHHHHHHHHHHH
Confidence 0124667778888899999832 2 27999999999999999998863
No 224
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=90.22 E-value=5.2 Score=38.19 Aligned_cols=94 Identities=14% Similarity=0.125 Sum_probs=57.5
Q ss_pred hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC-CCCC-----chhHHHHHh-cCCCEEEeCCCCC
Q 022892 128 KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND-LIVD-----PRNLEWMRE-ANCPVVADVTHSL 200 (290)
Q Consensus 128 ~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~-~~~d-----L~~i~~lk~-~~~pV~~D~sHs~ 200 (290)
..+.||+++-.-. +.+||.++++.+...|- +.+=+++++-..-+. ...+ ...+..+++ .++||.+=-+
T Consensus 97 ~~~~pvi~si~g~-~~~~~~~~a~~~~~~ga-d~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~--- 171 (325)
T cd04739 97 AVSIPVIASLNGV-SAGGWVDYARQIEEAGA-DALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLS--- 171 (325)
T ss_pred ccCCeEEEEeCCC-CHHHHHHHHHHHHhcCC-CEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcC---
Confidence 3478999998666 89999999999988774 445555543100000 0011 134555666 6889987211
Q ss_pred CCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 201 QQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
..-..+..++.++...||+|+++--+
T Consensus 172 ----------------p~~~~~~~~a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 172 ----------------PFFSALAHMAKQLDAAGADGLVLFNR 197 (325)
T ss_pred ----------------CCccCHHHHHHHHHHcCCCeEEEEcC
Confidence 00112356788888999999876443
No 225
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=90.14 E-value=6.3 Score=36.41 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=41.1
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIV 91 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~ 91 (290)
++++-||+|.+.. |.+..+++|+.. +++|+++|+... |+.|. ..-++-+...+++++..++|++
T Consensus 67 ~~~~~vi~gv~~~-~~~~~~~~a~~a----~~~G~d~v~~~~--------P~~~~-~~~~~l~~~~~~ia~~~~~pi~ 130 (284)
T cd00950 67 NGRVPVIAGTGSN-NTAEAIELTKRA----EKAGADAALVVT--------PYYNK-PSQEGLYAHFKAIAEATDLPVI 130 (284)
T ss_pred CCCCcEEeccCCc-cHHHHHHHHHHH----HHcCCCEEEEcc--------cccCC-CCHHHHHHHHHHHHhcCCCCEE
Confidence 3567889998862 555555555555 447999887641 22122 2213556678888888899988
No 226
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=90.07 E-value=1.7 Score=39.82 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=41.9
Q ss_pred cCCCEEEeCCCCCCCCCCCccCCCCccCCCC-cccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHH
Q 022892 188 ANCPVVADVTHSLQQPAGKKLDGGGVASGGL-RELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLE 266 (290)
Q Consensus 188 ~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~-~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~ 266 (290)
.++||++|.+.+- |. ..-+....+.-..+|+.|+.||-. |--.+++.-+ ..+++++
T Consensus 68 ~~iPv~vD~d~Gy----------------G~~~~~v~~tv~~~~~aG~agi~IEDq----~~~~~~~~l~---~~ee~~~ 124 (238)
T PF13714_consen 68 VSIPVIVDADTGY----------------GNDPENVARTVRELERAGAAGINIEDQ----RCGHGGKQLV---SPEEMVA 124 (238)
T ss_dssp SSSEEEEE-TTTS----------------SSSHHHHHHHHHHHHHCT-SEEEEESB----STTTSTT-B-----HHHHHH
T ss_pred hcCcEEEEccccc----------------CchhHHHHHHHHHHHHcCCcEEEeecc----ccCCCCCcee---CHHHHHH
Confidence 4689999999874 43 444555666678899999999977 1001333333 4566777
Q ss_pred HHHHHHHHhCC
Q 022892 267 ELVAIAKVSKG 277 (290)
Q Consensus 267 ~ir~~~~~lg~ 277 (290)
.||.+.++..+
T Consensus 125 kI~Aa~~a~~~ 135 (238)
T PF13714_consen 125 KIRAAVDARRD 135 (238)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHhccC
Confidence 77777777655
No 227
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=90.05 E-value=24 Score=35.99 Aligned_cols=182 Identities=15% Similarity=0.135 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEecc---ccccCCCCCcccCCCCChhHHHHHHHHH---HHhcCCcEEEe--------
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKS---SFDKANRTSSKSFRGPGMVEGLKILEKV---KIAYDIPIVTD-------- 93 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~---~~~k~~rts~~~~~g~~~~~~l~~L~~~---~~~~Gi~~~s~-------- 93 (290)
+.++.+..|+.|-+ +|++.+=.. +|+. .++-++ ++.|+.|+.+ ..+..+-.+..
T Consensus 25 ~t~d~l~ia~~ld~----~G~~siE~~GGatfd~-------~~rfl~-Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~ 92 (499)
T PRK12330 25 AMEDMVGACEDIDN----AGYWSVECWGGATFDA-------CIRFLN-EDPWERLRTFRKLMPNSRLQMLLRGQNLLGYR 92 (499)
T ss_pred CHHHHHHHHHHHHh----cCCCEEEecCCcchhh-------hhcccC-CCHHHHHHHHHHhCCCCeEEEEEcccccCCcc
Confidence 56778888888887 598775432 1221 111112 3334444333 33333333332
Q ss_pred ecC----cccHHHHhh-hcceecccCC--ccCCHH-HHHHHHhcCCeE----EEeCCCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 94 VHE----TVQCEEVGK-VADIIQIPAF--LCRQTD-LLVAAAKTGKII----NIKKGQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 94 ~~d----~~~~~~l~~-~~d~~kIgs~--~~~n~~-lL~~~a~~~~PV----ilstG~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
.+. ...++...+ .+|++-|.-. ++.|.. .++.+-+.|+-+ -...+.-.|++.+.+.++.+...|.+.|
T Consensus 93 ~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I 172 (499)
T PRK12330 93 HYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSI 172 (499)
T ss_pred CcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 000 112333333 4777665543 334443 234444556533 2222444599999999999999999888
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEE
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVF 238 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~ 238 (290)
.|..-...- .|. .+ ..-+..+|+ + ++||.+ +.|.. .| +...-..+|+.+||+ +
T Consensus 173 ~IkDtaGll-~P~-~~-~~LV~~Lk~~~~~~ipI~~-H~Hnt---------------~G---lA~An~laAieAGad--~ 228 (499)
T PRK12330 173 CIKDMAALL-KPQ-PA-YDIVKGIKEACGEDTRINL-HCHST---------------TG---VTLVSLMKAIEAGVD--V 228 (499)
T ss_pred EeCCCccCC-CHH-HH-HHHHHHHHHhCCCCCeEEE-EeCCC---------------CC---cHHHHHHHHHHcCCC--E
Confidence 887765531 111 11 245667777 6 699999 88874 13 224557789999998 7
Q ss_pred EeeeCCC
Q 022892 239 MEVHDDP 245 (290)
Q Consensus 239 IEkH~t~ 245 (290)
|+.-..+
T Consensus 229 vDtai~G 235 (499)
T PRK12330 229 VDTAISS 235 (499)
T ss_pred EEeeccc
Confidence 8876653
No 228
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=90.04 E-value=7.4 Score=40.35 Aligned_cols=210 Identities=15% Similarity=0.131 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEecc---ccccCCCCCcccCCCCChhHHHHHHHHHHH-hcCCcEEEe--ec------
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKS---SFDKANRTSSKSFRGPGMVEGLKILEKVKI-AYDIPIVTD--VH------ 95 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~---~~~k~~rts~~~~~g~~~~~~l~~L~~~~~-~~Gi~~~s~--~~------ 95 (290)
+.+..+++|..|.+ +|++.+=.. +|+. .++|-+ ++.++.++++.+ -.+.++.+= .-
T Consensus 19 ~t~dkl~ia~~L~~----~Gv~~IE~~GGatfd~-----~~~f~~---e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~ 86 (582)
T TIGR01108 19 RTEDMLPIAEKLDD----VGYWSLEVWGGATFDA-----CIRFLN---EDPWERLRELKKALPNTPLQMLLRGQNLLGYR 86 (582)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEecCCccccc-----ccccCC---CCHHHHHHHHHHhCCCCEEEEEEccccccccc
Confidence 55677888888887 498765442 2221 012221 334555555543 223444332 21
Q ss_pred -Ccc-----cHHHHhh-hcceecccCC--ccCCHH-HHHHHHhcCCeEEEe----CCCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 96 -ETV-----QCEEVGK-VADIIQIPAF--LCRQTD-LLVAAAKTGKIINIK----KGQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 96 -d~~-----~~~~l~~-~~d~~kIgs~--~~~n~~-lL~~~a~~~~PVils----tG~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
.++ .++...+ .+|++.|.-. +..|.. .++.+-+.|+-|-.. .....+++.+.+.++.+...|.+.|
T Consensus 87 ~ypddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I 166 (582)
T TIGR01108 87 HYADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSI 166 (582)
T ss_pred cCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 111 2344344 5777666532 334443 334455667766643 1122378999999999999998888
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
.|+.-.... .|. .+ ..-+..+|+ +++||++ +.|.. .| +...-+.+|+.+||+ +|+
T Consensus 167 ~i~Dt~G~~-~P~-~v-~~lv~~lk~~~~~pi~~-H~Hnt---------------~G---la~An~laAveaGa~--~vd 222 (582)
T TIGR01108 167 CIKDMAGIL-TPK-AA-YELVSALKKRFGLPVHL-HSHAT---------------TG---MAEMALLKAIEAGAD--GID 222 (582)
T ss_pred EECCCCCCc-CHH-HH-HHHHHHHHHhCCCceEE-EecCC---------------CC---cHHHHHHHHHHhCCC--EEE
Confidence 777766531 121 12 245666777 7899999 88874 12 224557789999998 777
Q ss_pred eeCCCCCC-------------C--CCCCCCCChHHHHHHHHHHHHHHH
Q 022892 241 VHDDPLNA-------------P--VDGPTQWPLRNLEELLEELVAIAK 273 (290)
Q Consensus 241 kH~t~dka-------------~--~D~~~sl~p~~l~~lv~~ir~~~~ 273 (290)
.-+..=-. + ......++++.|.++-+.++++.+
T Consensus 223 ~ai~GlG~~tGn~~le~vv~~L~~~g~~tgid~~~L~~l~~~~~~v~~ 270 (582)
T TIGR01108 223 TAISSMSGGTSHPPTETMVAALRGTGYDTGLDIELLLEIAAYFREVRK 270 (582)
T ss_pred eccccccccccChhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHH
Confidence 65543110 0 122334677766666555555544
No 229
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=89.99 E-value=8 Score=37.19 Aligned_cols=37 Identities=14% Similarity=0.050 Sum_probs=31.1
Q ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec
Q 022892 131 KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG 167 (290)
Q Consensus 131 ~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~g 167 (290)
+||++|-+...+.+++...++.+...|-+-|++..+.
T Consensus 211 ~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~ 247 (335)
T TIGR01036 211 VPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTT 247 (335)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCC
Confidence 8999999998787788888888888888778887754
No 230
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=89.97 E-value=2.2 Score=39.95 Aligned_cols=92 Identities=11% Similarity=-0.042 Sum_probs=54.9
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD 93 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~ 93 (290)
++++-||+|.++ +.+.+++.|+.. +++|+|+++.. .|+ |....-++-+++.+++++..++|++-=
T Consensus 72 ~g~~pvi~gv~~--~t~~ai~~a~~a----~~~Gadav~~~--------pP~-y~~~s~~~i~~~f~~v~~a~~~pvilY 136 (296)
T TIGR03249 72 KGKVPVYTGVGG--NTSDAIEIARLA----EKAGADGYLLL--------PPY-LINGEQEGLYAHVEAVCESTDLGVIVY 136 (296)
T ss_pred CCCCcEEEecCc--cHHHHHHHHHHH----HHhCCCEEEEC--------CCC-CCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 467789999885 666666666655 45699997653 122 222221344667888888888997731
Q ss_pred -----ecCcccHHHHhh---hcceecccCCccCCH
Q 022892 94 -----VHETVQCEEVGK---VADIIQIPAFLCRQT 120 (290)
Q Consensus 94 -----~~d~~~~~~l~~---~~d~~kIgs~~~~n~ 120 (290)
.++++.+..|.+ .+-.+|-++.++.++
T Consensus 137 n~~g~~l~~~~~~~La~~~~nvvgiKds~~d~~~~ 171 (296)
T TIGR03249 137 QRDNAVLNADTLERLADRCPNLVGFKDGIGDMEQM 171 (296)
T ss_pred eCCCCCCCHHHHHHHHhhCCCEEEEEeCCCCHHHH
Confidence 334444444443 245566666655544
No 231
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=89.94 E-value=2.1 Score=39.80 Aligned_cols=111 Identities=12% Similarity=0.050 Sum_probs=63.2
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT- 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s- 92 (290)
++++-||+|.+.. |.+..+++|++. +++|+|+|+.. .|+.| .+.-++-+...++++++.++|++-
T Consensus 65 ~~~~~vi~gv~~~-s~~~~i~~a~~a----~~~Gad~v~v~--------pP~y~-~~~~~~i~~~~~~i~~~~~~pi~lY 130 (285)
T TIGR00674 65 NGRVPVIAGTGSN-ATEEAISLTKFA----EDVGADGFLVV--------TPYYN-KPTQEGLYQHFKAIAEEVDLPIILY 130 (285)
T ss_pred CCCCeEEEeCCCc-cHHHHHHHHHHH----HHcCCCEEEEc--------CCcCC-CCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 4567899998863 555556555554 55799998763 12222 222134567788889888999873
Q ss_pred -------eecCcccHHHHhhh--cceecccCCccCCHHHHHHHHhcCCeEEEeCCCC
Q 022892 93 -------DVHETVQCEEVGKV--ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQF 140 (290)
Q Consensus 93 -------~~~d~~~~~~l~~~--~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~ 140 (290)
..++++.+..|.+. +-.+|-++.++.++.-+. ...+..+.+-+|..
T Consensus 131 n~P~~tg~~l~~~~l~~L~~~~~v~giK~s~~d~~~~~~l~--~~~~~~~~v~~G~d 185 (285)
T TIGR00674 131 NVPSRTGVSLYPETVKRLAEEPNIVAIKEATGNLERISEIK--AIAPDDFVVLSGDD 185 (285)
T ss_pred ECcHHhcCCCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH--HhcCCCeEEEECch
Confidence 12333444444432 445566666655443332 33343566666644
No 232
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=89.92 E-value=7.5 Score=34.75 Aligned_cols=114 Identities=19% Similarity=0.140 Sum_probs=63.7
Q ss_pred HHHHhh-hcceecccCCcc----CCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC
Q 022892 100 CEEVGK-VADIIQIPAFLC----RQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 100 ~~~l~~-~~d~~kIgs~~~----~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~ 174 (290)
++.+.+ .+|++.+-+-.= +=.+|++++-... +++--.-+ |++|.++|.+ .|-+-|.=..+|.. +|..
T Consensus 57 v~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MADis-t~ee~~~A~~----~G~D~I~TTLsGYT-~~t~ 128 (192)
T PF04131_consen 57 VDALAEAGADIIALDATDRPRPETLEELIREIKEKY--QLVMADIS-TLEEAINAAE----LGFDIIGTTLSGYT-PYTK 128 (192)
T ss_dssp HHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEEE-S-SHHHHHHHHH----TT-SEEE-TTTTSS-TTST
T ss_pred HHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhC--cEEeeecC-CHHHHHHHHH----cCCCEEEcccccCC-CCCC
Confidence 334444 577776654322 2235777776666 44444445 8999988865 56544433333322 1211
Q ss_pred -CCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 175 -LIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 175 -~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
..-|+.-+..|.+.++||+....-. -+..+..|..+||+.+++=+-+
T Consensus 129 ~~~pD~~lv~~l~~~~~pvIaEGri~----------------------tpe~a~~al~~GA~aVVVGsAI 176 (192)
T PF04131_consen 129 GDGPDFELVRELVQADVPVIAEGRIH----------------------TPEQAAKALELGAHAVVVGSAI 176 (192)
T ss_dssp TSSHHHHHHHHHHHTTSEEEEESS------------------------SHHHHHHHHHTT-SEEEE-HHH
T ss_pred CCCCCHHHHHHHHhCCCcEeecCCCC----------------------CHHHHHHHHhcCCeEEEECccc
Confidence 3356666667766688998743211 1778889999999999887654
No 233
>PRK06852 aldolase; Validated
Probab=89.90 E-value=3.2 Score=39.62 Aligned_cols=104 Identities=10% Similarity=-0.037 Sum_probs=62.9
Q ss_pred CCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeec----------CcccHHHH----hh-hcceecc
Q 022892 48 LPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVH----------ETVQCEEV----GK-VADIIQI 112 (290)
Q Consensus 48 ~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~----------d~~~~~~l----~~-~~d~~kI 112 (290)
+++|....|.- +.+ . ...-+.+..+.+.|+++|+|++..++ +++-+-++ .+ .+|++|+
T Consensus 135 AdAV~v~v~~G----s~~--E-~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv 207 (304)
T PRK06852 135 ILGVGYTIYLG----SEY--E-SEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKV 207 (304)
T ss_pred ceEEEEEEecC----CHH--H-HHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEe
Confidence 88888776651 100 0 00123455677888999999996332 22222222 23 4899999
Q ss_pred cCCcc---CCHHHH-HHHHhc-CCeEEEeCCCCCCHHHHHHHHHHHHH-cCC
Q 022892 113 PAFLC---RQTDLL-VAAAKT-GKIINIKKGQFCASSVMVNSAEKVRL-AGN 158 (290)
Q Consensus 113 gs~~~---~n~~lL-~~~a~~-~~PVilstG~~~tl~e~~~Ave~i~~-~Gn 158 (290)
.--.- .+.+.+ +.++.. +.||++.=|...+.+|+++-++-... .|.
T Consensus 208 ~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa 259 (304)
T PRK06852 208 NYPKKEGANPAELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGA 259 (304)
T ss_pred cCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence 86421 222333 335556 78999999998777788887775545 565
No 234
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=89.81 E-value=9.9 Score=37.48 Aligned_cols=185 Identities=23% Similarity=0.218 Sum_probs=108.5
Q ss_pred HHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe-----ecCcccHHHHhhhcce--ecccCCc
Q 022892 44 TKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD-----VHETVQCEEVGKVADI--IQIPAFL 116 (290)
Q Consensus 44 ~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~-----~~d~~~~~~l~~~~d~--~kIgs~~ 116 (290)
++.|+|.|....-.. .|....... ++-.+..+++++..++|++-. -.|++.++...+.+.= --|.|-+
T Consensus 150 ~~~~aD~Ialr~~S~----DP~~~d~~~-~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt 224 (389)
T TIGR00381 150 KEFGADMVTIHLIST----DPKLDDKSP-SEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASAN 224 (389)
T ss_pred HHhCCCEEEEEecCC----CccccccCH-HHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecC
Confidence 567999877653321 222121111 355667888889999999987 6688888877775432 4566666
Q ss_pred cC-CHHHHHHH-HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCC--cEEEEeecCCC-CCCCCCCCchhHHHHH-----
Q 022892 117 CR-QTDLLVAA-AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNP--NVMVCERGTMF-GYNDLIVDPRNLEWMR----- 186 (290)
Q Consensus 117 ~~-n~~lL~~~-a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~--~i~L~~~gs~~-~y~~~~~dL~~i~~lk----- 186 (290)
.. |+.=+-++ -+.|.||++++... ++.......++...|-+ + +++..++.. +|..+ --+..+..+|
T Consensus 225 ~e~Ny~~ia~lAk~yg~~Vvv~s~~D--in~ak~Ln~kL~~~Gv~~eD-IVlDP~t~alG~Gie-ya~s~~erIRraALk 300 (389)
T TIGR00381 225 LDLDYEKIANAAKKYGHVVLSWTIMD--INMQKTLNRYLLKRGLMPRD-IVMDPTTCALGYGIE-FSITNMERIRLSGLK 300 (389)
T ss_pred chhhHHHHHHHHHHhCCeEEEEcCCc--HHHHHHHHHHHHHcCCCHHH-EEEcCCCccccCCHH-HHHHHHHHHHHHHhc
Confidence 66 87644444 45789999998654 88888888888888876 6 556777631 23221 0112222222
Q ss_pred h---cCCCEEEeCCCCCCCCCCCccCCCCc-cCCCCcc---cHHHH--HHHHHHcCCCEEEEeeeC
Q 022892 187 E---ANCPVVADVTHSLQQPAGKKLDGGGV-ASGGLRE---LIPCI--ARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 187 ~---~~~pV~~D~sHs~~~~~~~~~~~~~~-~~~g~~~---~~~~~--a~aAva~GA~G~~IEkH~ 243 (290)
. +++|++.+.+.++.- +|+... ..-|.++ .+.++ +.+....|++ +++=.|+
T Consensus 301 gD~~L~~Pii~~~~~~w~~-----kEa~~~~~~wG~~~~Rg~lwE~~ta~~~~~aG~d-i~~m~HP 360 (389)
T TIGR00381 301 GDTDLNMPMSSGTTNAWGA-----REAWMVDSEWGPREYRGPLWEIITGLTMMLAGVD-LFMMLHP 360 (389)
T ss_pred CCcCCCCCeeccchhhhhh-----eeeccCCCCCCChHHhchhhhHHHHHHHHHcCCc-EEEEeCH
Confidence 2 578987766444311 111100 0112222 22222 3333567999 8888996
No 235
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=89.80 E-value=3.9 Score=38.76 Aligned_cols=174 Identities=18% Similarity=0.157 Sum_probs=86.5
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcceecccCCcc
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VADIIQIPAFLC 117 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d~~kIgs~~~ 117 (290)
++|+++|++.|+.-.=-++.|...+ |.-.-.+.+.+++..+...||++. ..-+..+++.|.+ .+|++- .|.-.
T Consensus 31 ~iae~~g~~~v~~~~~~psd~~~~g---g~~Rm~~p~~I~aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDiID-~Te~l 106 (293)
T PRK04180 31 KIAEEAGAVAVMALERVPADIRAAG---GVARMADPKMIEEIMDAVSIPVMAKARIGHFVEAQILEALGVDYID-ESEVL 106 (293)
T ss_pred HHHHHhChHHHHHccCCCchHhhcC---CeeecCCHHHHHHHHHhCCCCeEEeehhhHHHHHHHHHHcCCCEEe-ccCCC
Confidence 5677789888876321111221111 111112344444555666777765 3333556666666 577773 22222
Q ss_pred CCH-HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH----HHHHcC-----------------CCcEEEEeecCC-C---C
Q 022892 118 RQT-DLLVAAAKTGKIINIKKGQFCASSVMVNSAE----KVRLAG-----------------NPNVMVCERGTM-F---G 171 (290)
Q Consensus 118 ~n~-~lL~~~a~~~~PVilstG~~~tl~e~~~Ave----~i~~~G-----------------n~~i~L~~~gs~-~---~ 171 (290)
+-. ++.... +...-+.|=.|.+ |++|.+++++ .|.++| |.+|- ..+|.+ + .
T Consensus 107 rpad~~~~~~-K~~f~~~fmad~~-~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~-~L~gyt~~~~~~ 183 (293)
T PRK04180 107 TPADEEYHID-KWDFTVPFVCGAR-NLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIR-RLTSMSEDELYT 183 (293)
T ss_pred CchHHHHHHH-HHHcCCCEEccCC-CHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHH-HHhCCCHHHHHh
Confidence 222 122222 2222344445666 7777766654 122110 00110 012211 0 0
Q ss_pred CC-CCCCCchhHHHHHh-cCCCEE--EeCC-CCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 172 YN-DLIVDPRNLEWMRE-ANCPVV--ADVT-HSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 172 y~-~~~~dL~~i~~lk~-~~~pV~--~D~s-Hs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+. ....++..+..+++ .++||+ .-.. |+ +.-+..+..+||+|+++=+-++
T Consensus 184 ~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~T-----------------------Pedaa~vme~GAdgVaVGSaI~ 238 (293)
T PRK04180 184 AAKELQAPYELVKEVAELGRLPVVNFAAGGIAT-----------------------PADAALMMQLGADGVFVGSGIF 238 (293)
T ss_pred hccccCCCHHHHHHHHHhCCCCEEEEEeCCCCC-----------------------HHHHHHHHHhCCCEEEEcHHhh
Confidence 11 12467788888888 789996 3111 12 4455566789999999988875
No 236
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=89.74 E-value=17 Score=36.52 Aligned_cols=182 Identities=16% Similarity=0.222 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEecc---ccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEE--EeecC-----
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKS---SFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIV--TDVHE----- 96 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~---~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~--s~~~d----- 96 (290)
+.+..+++|+.|.+ +|++.+=.. +|.. -.+|-+ ++.++.++.+.+. .+.++. ...-+
T Consensus 24 ~t~dkl~ia~~Ld~----~Gv~~IE~~ggatf~~-----~~~f~~---e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~ 91 (448)
T PRK12331 24 TTEEMLPILEKLDN----AGYHSLEMWGGATFDA-----CLRFLN---EDPWERLRKIRKAVKKTKLQMLLRGQNLLGYR 91 (448)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEecCCccchh-----hhccCC---CCHHHHHHHHHHhCCCCEEEEEeccccccccc
Confidence 45677888888877 498776431 1221 012222 3345555555444 344443 22111
Q ss_pred -------cccHHHHhh-hcceecccCC--ccCCHH-HHHHHHhcCCeEE--Ee--CCCCCCHHHHHHHHHHHHHcCCCcE
Q 022892 97 -------TVQCEEVGK-VADIIQIPAF--LCRQTD-LLVAAAKTGKIIN--IK--KGQFCASSVMVNSAEKVRLAGNPNV 161 (290)
Q Consensus 97 -------~~~~~~l~~-~~d~~kIgs~--~~~n~~-lL~~~a~~~~PVi--ls--tG~~~tl~e~~~Ave~i~~~Gn~~i 161 (290)
...++...+ .+|++.|.-. +..|.. .++.+-+.|+-+. ++ .+...+++-+.+-++.+.+.|-+.|
T Consensus 92 ~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I 171 (448)
T PRK12331 92 NYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSI 171 (448)
T ss_pred cCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 122344444 5777766533 334543 4455556777643 22 2334478888888888888998888
Q ss_pred EEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 162 MVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 162 ~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
.|+.-...- .|.. + ..-+..+|+ +++||.+ +.|.. .| +...-+.+|+.+||+ +|+
T Consensus 172 ~i~Dt~G~l-~P~~-v-~~lv~alk~~~~~pi~~-H~Hnt---------------~G---lA~AN~laAieaGad--~vD 227 (448)
T PRK12331 172 CIKDMAGIL-TPYV-A-YELVKRIKEAVTVPLEV-HTHAT---------------SG---IAEMTYLKAIEAGAD--IID 227 (448)
T ss_pred EEcCCCCCC-CHHH-H-HHHHHHHHHhcCCeEEE-EecCC---------------CC---cHHHHHHHHHHcCCC--EEE
Confidence 887766531 2211 1 245667777 7899999 88864 12 235567789999998 788
Q ss_pred eeCCC
Q 022892 241 VHDDP 245 (290)
Q Consensus 241 kH~t~ 245 (290)
.-+.+
T Consensus 228 ~sv~g 232 (448)
T PRK12331 228 TAISP 232 (448)
T ss_pred eeccc
Confidence 76654
No 237
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=89.62 E-value=1.6 Score=39.58 Aligned_cols=171 Identities=23% Similarity=0.277 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d 108 (290)
-.++|+.+.+ .|++-+...-.+.+ .. +-..-+..+++.+++.++|+.. =+.+.++++.+.+ .++
T Consensus 31 P~~~a~~~~~----~g~~~l~ivDLdaa-------~~--g~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~ 97 (229)
T PF00977_consen 31 PVEVAKAFNE----QGADELHIVDLDAA-------KE--GRGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGAD 97 (229)
T ss_dssp HHHHHHHHHH----TT-SEEEEEEHHHH-------CC--THHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-S
T ss_pred HHHHHHHHHH----cCCCEEEEEEccCc-------cc--CchhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCC
Confidence 4678887754 58887776655521 01 1135578899999998888877 5778888888777 699
Q ss_pred eecccCCccCCHHHHHHHHhc-CC-eEEE----eCC--------CC---CCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Q 022892 109 IIQIPAFLCRQTDLLVAAAKT-GK-IINI----KKG--------QF---CASSVMVNSAEKVRLAGNPNVMVCERGTMFG 171 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~~-~~-PVil----stG--------~~---~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~ 171 (290)
.+-||+...+|.++++++++. +. -|++ +.| .. .++.|+ ++.+.+.|-..+ |+.+..+-+
T Consensus 98 ~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~---~~~~~~~g~~~i-i~tdi~~dG 173 (229)
T PF00977_consen 98 RVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEF---AKRLEELGAGEI-ILTDIDRDG 173 (229)
T ss_dssp EEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHH---HHHHHHTT-SEE-EEEETTTTT
T ss_pred EEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHH---HHHHHhcCCcEE-EEeeccccC
Confidence 999999999999999887653 32 1222 233 22 234554 445666776665 555554322
Q ss_pred CCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 172 YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 172 y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
.- .=.|+..+..+++ +++||++- +|.+.. ..+. .+...|++|+++=+-
T Consensus 174 t~-~G~d~~~~~~l~~~~~~~vias--------------------GGv~~~-~Dl~-~l~~~G~~gvivg~a 222 (229)
T PF00977_consen 174 TM-QGPDLELLKQLAEAVNIPVIAS--------------------GGVRSL-EDLR-ELKKAGIDGVIVGSA 222 (229)
T ss_dssp TS-SS--HHHHHHHHHHHSSEEEEE--------------------SS--SH-HHHH-HHHHTTECEEEESHH
T ss_pred Cc-CCCCHHHHHHHHHHcCCCEEEe--------------------cCCCCH-HHHH-HHHHCCCcEEEEehH
Confidence 11 1246777888877 89999871 122111 2233 234889999887543
No 238
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=89.60 E-value=1.5 Score=40.76 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcceecccCCccCCHHHHHHHHh
Q 022892 74 EGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAK 128 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~ 128 (290)
..+++++++++..++|++. -+++++++..+.. .+|.++|++..+.+..+.+.+.+
T Consensus 218 ~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~ 275 (296)
T cd04740 218 IALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIE 275 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHH
Confidence 3577888888888999998 6888887776655 79999999999998887766543
No 239
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=89.28 E-value=4.7 Score=36.53 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=72.7
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEEE-eecCcccHHHHh
Q 022892 27 ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIVT-DVHETVQCEEVG 104 (290)
Q Consensus 27 en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~s-~~~d~~~~~~l~ 104 (290)
++.+..+..|+.|++ .|+++|-.. .+| ...++.++.++++++ ..+-+ |++++++++.+.
T Consensus 22 ~~~e~a~~~a~Ali~----gGi~~IEIT------l~s---------p~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~ 82 (211)
T COG0800 22 DDVEEALPLAKALIE----GGIPAIEIT------LRT---------PAALEAIRALAKEFPEALIGAGTVLNPEQARQAI 82 (211)
T ss_pred CCHHHHHHHHHHHHH----cCCCeEEEe------cCC---------CCHHHHHHHHHHhCcccEEccccccCHHHHHHHH
Confidence 356888999999988 589987542 112 234555666666666 33333 999999999987
Q ss_pred h-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 105 K-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 105 ~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
+ ..+++-=+. .|.++++.+.+.++|++ =|.+ |+.|+..|.|
T Consensus 83 ~aGa~fiVsP~---~~~ev~~~a~~~~ip~~--PG~~-TptEi~~Ale 124 (211)
T COG0800 83 AAGAQFIVSPG---LNPEVAKAANRYGIPYI--PGVA-TPTEIMAALE 124 (211)
T ss_pred HcCCCEEECCC---CCHHHHHHHHhCCCccc--CCCC-CHHHHHHHHH
Confidence 7 577665554 57789999988898875 5777 9999999976
No 240
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=89.25 E-value=3 Score=38.88 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=43.0
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s 92 (290)
++++-||||.+.. |.+...+.|+... ++|+++++.. .|+.|+ +.-++-+++.+++++.. ++|++-
T Consensus 68 ~~~~~viagv~~~-~~~~ai~~a~~a~----~~Gad~v~~~--------~P~y~~-~~~~~i~~~~~~v~~a~~~lpi~i 133 (288)
T cd00954 68 KGKVTLIAHVGSL-NLKESQELAKHAE----ELGYDAISAI--------TPFYYK-FSFEEIKDYYREIIAAAASLPMII 133 (288)
T ss_pred CCCCeEEeccCCC-CHHHHHHHHHHHH----HcCCCEEEEe--------CCCCCC-CCHHHHHHHHHHHHHhcCCCCEEE
Confidence 4578899999752 5666666666655 4799998742 122222 22135566788889988 899874
No 241
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=89.19 E-value=7.8 Score=39.07 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEE-EeecCcccHHHHhh-hc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIV-TDVHETVQCEEVGK-VA 107 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~-s~~~d~~~~~~l~~-~~ 107 (290)
..++.++.|++ +|++++....- ++.. ...+..++.+++++ +++++ -.+.+.+.+..+.+ .+
T Consensus 228 ~~~e~a~~L~~----agvdvivvD~a-----------~g~~-~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGa 291 (486)
T PRK05567 228 DNEERAEALVE----AGVDVLVVDTA-----------HGHS-EGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGA 291 (486)
T ss_pred chHHHHHHHHH----hCCCEEEEECC-----------CCcc-hhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCC
Confidence 35888888888 49987743211 0111 34566777777787 88855 69999999999988 79
Q ss_pred ceecccCCc-------------cCCHHHHHHHH----hcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 108 DIIQIPAFL-------------CRQTDLLVAAA----KTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 108 d~~kIgs~~-------------~~n~~lL~~~a----~~~~PVilstG~~~tl~e~~~Ave 151 (290)
|++++|-.. ..+...+.+++ +.+.|||..-|.. +..|+..|+.
T Consensus 292 d~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~-~~~di~kAla 351 (486)
T PRK05567 292 DAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIR-YSGDIAKALA 351 (486)
T ss_pred CEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCC-CHHHHHHHHH
Confidence 999986221 12344554443 3578999999999 9999998865
No 242
>PLN02229 alpha-galactosidase
Probab=89.10 E-value=2.9 Score=41.70 Aligned_cols=118 Identities=16% Similarity=0.099 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHH-HHHcCCCEEeccccc-cCCCCCcccCC--CCChhHHHHHHHHHHHhcCCcEEE-----------
Q 022892 28 SEEHIMRMAKHIKSI-STKVGLPLVFKSSFD-KANRTSSKSFR--GPGMVEGLKILEKVKIAYDIPIVT----------- 92 (290)
Q Consensus 28 n~~~~le~Ak~L~~~-a~~~G~~~V~~~~~~-k~~rts~~~~~--g~~~~~~l~~L~~~~~~~Gi~~~s----------- 92 (290)
|++..++.|..|++. .+++|.+.|-....+ ...|...+.+. .-.+..|++.|.++.++.|+.|--
T Consensus 78 ~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~k~ladyiH~~GlKfGIy~d~G~~TC~~ 157 (427)
T PLN02229 78 NETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGIKLLADYVHSKGLKLGIYSDAGVFTCQV 157 (427)
T ss_pred CHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCCcHHHHHHHHHHCCCceEEeccCCCcccCC
Confidence 778889999987543 246788776665534 22344333221 111246899999999999998853
Q ss_pred ----eecCcccHHHHhh-hcceecccCCccC-------CHHHHHHHHhcCCeEEEeC---CCCCCHHHH
Q 022892 93 ----DVHETVQCEEVGK-VADIIQIPAFLCR-------QTDLLVAAAKTGKIINIKK---GQFCASSVM 146 (290)
Q Consensus 93 ----~~~d~~~~~~l~~-~~d~~kIgs~~~~-------n~~lL~~~a~~~~PVilst---G~~~tl~e~ 146 (290)
--+...+++..++ .+|++|+-..... -..+-+++.++|+||++|- |.. .+..|
T Consensus 158 ~pGS~g~e~~DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~WG~~-~p~~w 225 (427)
T PLN02229 158 RPGSLFHEVDDADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATGRSIFYSLCEWGVD-DPALW 225 (427)
T ss_pred CCCCccHHHHHHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhCCCcEEEecCCCCC-CHHHH
Confidence 1133344556677 7999998765331 1135567889999999984 544 45555
No 243
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=89.05 E-value=9.4 Score=36.50 Aligned_cols=124 Identities=19% Similarity=0.243 Sum_probs=74.9
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE-
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT- 92 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s- 92 (290)
+++.+.+.++. + ....+.++.|++ +|+++|-...-. +.. ...++.++++.+.. .++++.
T Consensus 81 ~~l~v~~~~~~--~-~~~~~~~~~l~e----agv~~I~vd~~~-----------G~~-~~~~~~i~~ik~~~p~v~Vi~G 141 (325)
T cd00381 81 GRLLVGAAVGT--R-EDDKERAEALVE----AGVDVIVIDSAH-----------GHS-VYVIEMIKFIKKKYPNVDVIAG 141 (325)
T ss_pred cCceEEEecCC--C-hhHHHHHHHHHh----cCCCEEEEECCC-----------CCc-HHHHHHHHHHHHHCCCceEEEC
Confidence 34555555443 3 235667777666 599887653211 111 23445555555544 388875
Q ss_pred eecCcccHHHHhh-hcceeccc--CCc-c----------CCHHHHHHHH----hcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 022892 93 DVHETVQCEEVGK-VADIIQIP--AFL-C----------RQTDLLVAAA----KTGKIINIKKGQFCASSVMVNSAEKVR 154 (290)
Q Consensus 93 ~~~d~~~~~~l~~-~~d~~kIg--s~~-~----------~n~~lL~~~a----~~~~PVilstG~~~tl~e~~~Ave~i~ 154 (290)
++.+.+.+..+.+ .+|+++++ ++. + -+..++..+. ..+.||+-.=|.. +..++..|..
T Consensus 142 ~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~-~~~di~kAla--- 217 (325)
T cd00381 142 NVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIR-TSGDIVKALA--- 217 (325)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCC-CHHHHHHHHH---
Confidence 8888888888887 69999984 211 1 1223333332 3479999888887 9999988864
Q ss_pred HcCCCcEE
Q 022892 155 LAGNPNVM 162 (290)
Q Consensus 155 ~~Gn~~i~ 162 (290)
.|-.-++
T Consensus 218 -~GA~~Vm 224 (325)
T cd00381 218 -AGADAVM 224 (325)
T ss_pred -cCCCEEE
Confidence 4654333
No 244
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=89.04 E-value=17 Score=32.84 Aligned_cols=181 Identities=13% Similarity=0.056 Sum_probs=100.2
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC-CCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG-LPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD 93 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G-~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~ 93 (290)
-++|+|..+-. +....++..+++.+ .| +.+|-. -+| ..+ .. .+..-.+.+++.|+++|++++-.
T Consensus 13 ~~ly~It~~~~--~~~~~~~~l~~al~----~G~v~~vQl--R~K--~l~---~~--~~~~~a~~l~~l~~~~gv~liIN 77 (221)
T PRK06512 13 CRIVLVAPPIA--DGAELAKLLRAALQ----GGDVASVIL--PQY--GLD---EA--TFQKQAEKLVPVIQEAGAAALIA 77 (221)
T ss_pred CeEEEEeCCCc--ccccHHHHHHHHHc----CCCccEEEE--eCC--CCC---HH--HHHHHHHHHHHHHHHhCCEEEEe
Confidence 35899987643 22334555555444 57 465432 122 000 00 11244567899999999999865
Q ss_pred ecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Q 022892 94 VHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGY 172 (290)
Q Consensus 94 ~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y 172 (290)
- .++.... .+|-+-+|..++.=.. .+..-..++-|.+|+.. +.++..+|. ..|-+.+.+-+--++...
T Consensus 78 d----~~dlA~~~~adGVHLg~~d~~~~~-~r~~~~~~~iiG~s~~~--s~~~a~~A~----~~gaDYv~~Gpv~t~tK~ 146 (221)
T PRK06512 78 G----DSRIAGRVKADGLHIEGNLAALAE-AIEKHAPKMIVGFGNLR--DRHGAMEIG----ELRPDYLFFGKLGADNKP 146 (221)
T ss_pred C----HHHHHHHhCCCEEEECccccCHHH-HHHhcCCCCEEEecCCC--CHHHHHHhh----hcCCCEEEECCCCCCCCC
Confidence 2 3666555 5888899987653222 22222234556666432 567666653 357777777553221101
Q ss_pred CCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 173 NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 173 ~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+.....+..+.++++ .++||+. + +|.. ..-...+...||+|+-+-+-+.
T Consensus 147 ~~~p~gl~~l~~~~~~~~iPvvA-----I---------------GGI~---~~n~~~~~~~GA~giAvisai~ 196 (221)
T PRK06512 147 EAHPRNLSLAEWWAEMIEIPCIV-----Q---------------AGSD---LASAVEVAETGAEFVALERAVF 196 (221)
T ss_pred CCCCCChHHHHHHHHhCCCCEEE-----E---------------eCCC---HHHHHHHHHhCCCEEEEhHHhh
Confidence 111134555666666 7899855 1 2310 2223456788999998888774
No 245
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=88.96 E-value=5.3 Score=36.32 Aligned_cols=74 Identities=15% Similarity=-0.006 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCcc-----------CCHHHHHHHHhcCCeEEEeCCCCCC
Q 022892 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLC-----------RQTDLLVAAAKTGKIINIKKGQFCA 142 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~-----------~n~~lL~~~a~~~~PVilstG~~~t 142 (290)
.+..+.+..+..|..+|++.-..++.-+..+ .+|++ |+... -++.|++++.+.+++||-.-... |
T Consensus 115 ~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~I--GTTLsGYT~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~~-t 191 (229)
T COG3010 115 DLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDII--GTTLSGYTGYTEKPTEPDFQLVKQLSDAGCRVIAEGRYN-T 191 (229)
T ss_pred hHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEE--ecccccccCCCCCCCCCcHHHHHHHHhCCCeEEeeCCCC-C
Confidence 5777777789999999999999988887776 57775 22211 46789999999999999988888 9
Q ss_pred HHHHHHHHH
Q 022892 143 SSVMVNSAE 151 (290)
Q Consensus 143 l~e~~~Ave 151 (290)
++....|.+
T Consensus 192 P~~Ak~a~~ 200 (229)
T COG3010 192 PEQAKKAIE 200 (229)
T ss_pred HHHHHHHHH
Confidence 999998866
No 246
>PRK09389 (R)-citramalate synthase; Provisional
Probab=88.92 E-value=9.9 Score=38.53 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=63.3
Q ss_pred HHHHHhcCCeEEEeC--CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCC
Q 022892 123 LVAAAKTGKIINIKK--GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHS 199 (290)
Q Consensus 123 L~~~a~~~~PVilst--G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs 199 (290)
++++.+.+..|.++- +...+++-+.+.++.+...|-..|.|+..... -.|...- .-+..+++ .++|+++ +.|-
T Consensus 120 v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~-~~P~~~~--~lv~~l~~~~~v~l~~-H~HN 195 (488)
T PRK09389 120 VEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDTVGI-LTPEKTY--ELFKRLSELVKGPVSI-HCHN 195 (488)
T ss_pred HHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-cCHHHHH--HHHHHHHhhcCCeEEE-EecC
Confidence 345556677665543 33336777777788888889888888877653 1232211 33566776 7889988 6664
Q ss_pred CCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 200 LQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 200 ~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
. +.+...-+.+|+.+||+ .+|.-+.
T Consensus 196 D------------------~GlAvANalaAv~aGa~--~Vd~Ti~ 220 (488)
T PRK09389 196 D------------------FGLAVANTLAALAAGAD--QVHVTIN 220 (488)
T ss_pred C------------------ccHHHHHHHHHHHcCCC--EEEEEcc
Confidence 2 22335557789999998 7887664
No 247
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=88.91 E-value=5.6 Score=38.11 Aligned_cols=140 Identities=12% Similarity=0.061 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceec-----ccCCccCCHHHHHHH----H-hcCCeEEEeC--CCCC
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQ-----IPAFLCRQTDLLVAA----A-KTGKIINIKK--GQFC 141 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~k-----Igs~~~~n~~lL~~~----a-~~~~PVilst--G~~~ 141 (290)
+.+....+.+++.|...+-==+ .++.-+ -||..+.+.+++.++ . ..+.||.+|. |...
T Consensus 77 ~~~~~aA~~~~~~g~d~IdlN~----------gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~ 146 (333)
T PRK11815 77 ADLAEAAKLAEDWGYDEINLNV----------GCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDD 146 (333)
T ss_pred HHHHHHHHHHHhcCCCEEEEcC----------CCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCC
Confidence 5566777777777765442111 123222 267777888766553 2 2578999985 3321
Q ss_pred --CHHHHHHHHHHHHHcCCCcEEEEeecCC--CCCCC------CCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccC
Q 022892 142 --ASSVMVNSAEKVRLAGNPNVMVCERGTM--FGYND------LIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLD 209 (290)
Q Consensus 142 --tl~e~~~Ave~i~~~Gn~~i~L~~~gs~--~~y~~------~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~ 209 (290)
+.++..+.+..+...|-..+ .+|..+. -+|.. ..+++..+..+++ . ++||+.+.+-.
T Consensus 147 ~~t~~~~~~~~~~l~~aG~d~i-~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~---------- 215 (333)
T PRK11815 147 QDSYEFLCDFVDTVAEAGCDTF-IVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIK---------- 215 (333)
T ss_pred CcCHHHHHHHHHHHHHhCCCEE-EEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcC----------
Confidence 35566677777777886554 4554321 12221 2367778888887 5 89998843322
Q ss_pred CCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCC
Q 022892 210 GGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 247 (290)
Q Consensus 210 ~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dk 247 (290)
. +.-+....+ ||||+||=+-.--|.
T Consensus 216 -------s-----~eda~~~l~-~aDgVmIGRa~l~nP 240 (333)
T PRK11815 216 -------T-----LEEAKEHLQ-HVDGVMIGRAAYHNP 240 (333)
T ss_pred -------C-----HHHHHHHHh-cCCEEEEcHHHHhCC
Confidence 1 222333343 799999987653333
No 248
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=88.86 E-value=19 Score=33.03 Aligned_cols=150 Identities=11% Similarity=0.001 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCcc--CCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLC--RQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~--~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
+....+.+...+.|++.+=--+ ..+ +..+.++.+.+.+.++-+..-...+.+++..|.
T Consensus 20 ~~k~~i~~~L~~~Gv~~iE~g~-------------------p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~- 79 (259)
T cd07939 20 EEKLAIARALDEAGVDEIEVGI-------------------PAMGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAAL- 79 (259)
T ss_pred HHHHHHHHHHHHcCCCEEEEec-------------------CCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHH-
Confidence 4555666667778877653321 112 223466777665444433333323777776654
Q ss_pred HHHHcCCCcEEEEeecCCC----CCCC---CCCC--chhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccH
Q 022892 152 KVRLAGNPNVMVCERGTMF----GYND---LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELI 222 (290)
Q Consensus 152 ~i~~~Gn~~i~L~~~gs~~----~y~~---~~~d--L~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~ 222 (290)
..|-+.+.++-..+.+ ..+. +.++ ...+...|+.|+.|.+.+..+. .-..+.+
T Consensus 80 ---~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~---------------~~~~~~~ 141 (259)
T cd07939 80 ---RCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDAS---------------RADPDFL 141 (259)
T ss_pred ---hCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCC---------------CCCHHHH
Confidence 4566777777665521 0110 0010 1223333445777766544431 0124556
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 223 PCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 223 ~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
..++..+..+|++.+ .++|..-.+.|+++.++++.+++.
T Consensus 142 ~~~~~~~~~~G~~~i----------~l~DT~G~~~P~~v~~lv~~l~~~ 180 (259)
T cd07939 142 IEFAEVAQEAGADRL----------RFADTVGILDPFTTYELIRRLRAA 180 (259)
T ss_pred HHHHHHHHHCCCCEE----------EeCCCCCCCCHHHHHHHHHHHHHh
Confidence 677778888999843 237999999999999999999864
No 249
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=88.78 E-value=19 Score=33.69 Aligned_cols=121 Identities=20% Similarity=0.184 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 022892 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 154 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~ 154 (290)
+-..|++.|.+.|++.+.+-....+.+ -+++.. ..|+.+.--...+.+++..+++.+.
T Consensus 82 ~~~~la~aa~~~g~~~~~~~~~~~~~~--------------------~i~~~~--~~~~~~ql~~~~~~~~~~~~i~~~~ 139 (299)
T cd02809 82 GELATARAAAAAGIPFTLSTVSTTSLE--------------------EVAAAA--PGPRWFQLYVPRDREITEDLLRRAE 139 (299)
T ss_pred HHHHHHHHHHHcCCCEEecCCCcCCHH--------------------HHHHhc--CCCeEEEEeecCCHHHHHHHHHHHH
Confidence 346799999999999975543322222 222222 2565555332226788888888877
Q ss_pred HcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC
Q 022892 155 LAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG 233 (290)
Q Consensus 155 ~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G 233 (290)
..|. +.+.++.+... +........+..+++ +++||++=--.+ ...++.+..+|
T Consensus 140 ~~g~-~~i~l~~~~p~--~~~~~~~~~i~~l~~~~~~pvivK~v~s-----------------------~~~a~~a~~~G 193 (299)
T cd02809 140 AAGY-KALVLTVDTPV--LGRRLTWDDLAWLRSQWKGPLILKGILT-----------------------PEDALRAVDAG 193 (299)
T ss_pred HcCC-CEEEEecCCCC--CCCCCCHHHHHHHHHhcCCCEEEeecCC-----------------------HHHHHHHHHCC
Confidence 7764 56667766521 111134567888888 789998721111 56688889999
Q ss_pred CCEEEEeeeC
Q 022892 234 VDGVFMEVHD 243 (290)
Q Consensus 234 A~G~~IEkH~ 243 (290)
|+++.+.-|-
T Consensus 194 ~d~I~v~~~g 203 (299)
T cd02809 194 ADGIVVSNHG 203 (299)
T ss_pred CCEEEEcCCC
Confidence 9998887664
No 250
>PLN02765 pyruvate kinase
Probab=88.74 E-value=5.9 Score=40.57 Aligned_cols=118 Identities=12% Similarity=0.026 Sum_probs=82.8
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC---CcEEEeecCcccHHHHhh---hcceecccC
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD---IPIVTDVHETVQCEEVGK---VADIIQIPA 114 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G---i~~~s~~~d~~~~~~l~~---~~d~~kIgs 114 (290)
+.+.+.|+|+|...+-.. .+.+..+++++.+.| +++++-+-.++.++-+.+ ..|.+-|+=
T Consensus 214 ~f~~~~~vD~ia~SFVr~--------------a~DI~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eIi~~sDgIMVAR 279 (526)
T PLN02765 214 TWGVPNKIDFLSLSYTRH--------------AEDVREAREFLSSLGLSQTQIFAKIENVEGLTHFDEILQEADGIILSR 279 (526)
T ss_pred HHHHHcCCCEEEECCCCC--------------HHHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEec
Confidence 455677888887643221 477889999998764 689999998888887776 589999998
Q ss_pred Ccc-----------CCHHHHHHHHhcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC
Q 022892 115 FLC-----------RQTDLLVAAAKTGKIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 115 ~~~-----------~n~~lL~~~a~~~~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~ 174 (290)
+++ -|..+++.+-..+||||. |-|- .|-.|+-..+..+. .|-+-++|-.-+..-.||.
T Consensus 280 GDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~-TQmLeSMi~np~PTRAEvsDVaNAV~-DGaDavMLSgETA~G~yPv 356 (526)
T PLN02765 280 GNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVL-DGADAILLGAETLRGLYPV 356 (526)
T ss_pred CccccccCHHHhHHHHHHHHHHHHHhCCCeEE-ehhhhHHhhCCCCChhhHHHHHHHHH-hCCCEEEecchhcCCCCHH
Confidence 887 445566777789999996 7653 24466666666555 4666667654443323775
No 251
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=88.65 E-value=3.3 Score=39.41 Aligned_cols=117 Identities=12% Similarity=0.152 Sum_probs=79.0
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT- 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s- 92 (290)
+-|+.+=--++. ++.+...+.|+.+. ++|++++.-- +||....|.+.. -.|..++++++..+||++.
T Consensus 133 ~~pVsvKiR~g~-~~~~~~~~~a~~l~----~~Gvd~i~Vh-----~Rt~~~~y~g~~--~~~~~i~~ik~~~~iPVi~n 200 (312)
T PRK10550 133 HLPVTVKVRLGW-DSGERKFEIADAVQ----QAGATELVVH-----GRTKEDGYRAEH--INWQAIGEIRQRLTIPVIAN 200 (312)
T ss_pred CcceEEEEECCC-CCchHHHHHHHHHH----hcCCCEEEEC-----CCCCccCCCCCc--ccHHHHHHHHhhcCCcEEEe
Confidence 345444333443 23233455555554 4799987653 677655565432 1367788888889999998
Q ss_pred -eecCcccHHHHhh--hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHH
Q 022892 93 -DVHETVQCEEVGK--VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSA 150 (290)
Q Consensus 93 -~~~d~~~~~~l~~--~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Av 150 (290)
.+++++++..+.+ .+|.+.||-..+.|..+.+++.. +.| . .+.+|..+.+
T Consensus 201 GdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~-g~~------~-~~~~e~~~~~ 253 (312)
T PRK10550 201 GEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKY-NEP------R-MPWPEVVALL 253 (312)
T ss_pred CCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhc-CCC------C-CCHHHHHHHH
Confidence 8999999998764 69999999999999999888754 332 2 2677766544
No 252
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=88.64 E-value=2.1 Score=43.47 Aligned_cols=117 Identities=17% Similarity=0.128 Sum_probs=66.0
Q ss_pred cccHHHHhh-hcceecccCCc---cCCHHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE-Ee----
Q 022892 97 TVQCEEVGK-VADIIQIPAFL---CRQTDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV-CE---- 165 (290)
Q Consensus 97 ~~~~~~l~~-~~d~~kIgs~~---~~n~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L-~~---- 165 (290)
.+.++.+.+ .+|++-|-..+ ....++++++-+. +.||+..|. .|.++.+.+++ .|-+-|.+ +.
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V--~t~~~a~~~~~----aGad~I~vg~g~Gs~ 316 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNV--VTADQAKNLID----AGADGLRIGMGSGSI 316 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCc--CCHHHHHHHHH----cCCCEEEECCcCCcc
Confidence 344455555 58888876632 2334677777654 568887544 46888777654 56654433 12
Q ss_pred ecCC----CCCCCCCCCchhHHHH----HhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 166 RGTM----FGYNDLIVDPRNLEWM----REANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 166 ~gs~----~~y~~~~~dL~~i~~l----k~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
|.+. .++| .+.++..+ ++.++||+.|.-=.. + ..++ .|.++||+++
T Consensus 317 ~~t~~~~~~g~p----~~~ai~~~~~~~~~~~v~vIadGGi~~----------------~-----~di~-kAla~GA~~V 370 (495)
T PTZ00314 317 CITQEVCAVGRP----QASAVYHVARYARERGVPCIADGGIKN----------------S-----GDIC-KALALGADCV 370 (495)
T ss_pred cccchhccCCCC----hHHHHHHHHHHHhhcCCeEEecCCCCC----------------H-----HHHH-HHHHcCCCEE
Confidence 3332 1233 23343333 336899987532111 1 2344 5799999999
Q ss_pred EEeeeCCC
Q 022892 238 FMEVHDDP 245 (290)
Q Consensus 238 ~IEkH~t~ 245 (290)
|+=+-|+-
T Consensus 371 m~G~~~a~ 378 (495)
T PTZ00314 371 MLGSLLAG 378 (495)
T ss_pred EECchhcc
Confidence 99876643
No 253
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=88.60 E-value=2.9 Score=39.89 Aligned_cols=91 Identities=14% Similarity=0.099 Sum_probs=55.4
Q ss_pred hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC---C-CCCC--CCCchhHHHHHh-cCCCEEEeCCCCC
Q 022892 128 KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF---G-YNDL--IVDPRNLEWMRE-ANCPVVADVTHSL 200 (290)
Q Consensus 128 ~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~---~-y~~~--~~dL~~i~~lk~-~~~pV~~D~sHs~ 200 (290)
+.++||+++-+.. +.+||.++++.+...|-. .+-++.+... . +... ..-...+..+++ .++||++--+
T Consensus 99 ~~~~pvi~sI~g~-~~~e~~~~a~~~~~agad-~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~--- 173 (334)
T PRK07565 99 AVDIPVIASLNGS-SAGGWVDYARQIEQAGAD-ALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLS--- 173 (334)
T ss_pred hcCCcEEEEeccC-CHHHHHHHHHHHHHcCCC-EEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeC---
Confidence 4478999999887 999999999999888754 3434432210 0 1100 001234455666 6899987211
Q ss_pred CCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 201 QQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
| + -.....++.++...|++|+++
T Consensus 174 --p-------------~-~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 174 --P-------------Y-FSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred --C-------------C-chhHHHHHHHHHHcCCCeEEE
Confidence 0 1 111256677778899998755
No 254
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=88.50 E-value=9.9 Score=35.35 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=53.8
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD 93 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~ 93 (290)
++++-||+|.+.. |.+..+++|++..+ +|+++|+... |. |..+.-++-+++.+++++..++|++-=
T Consensus 68 ~~~~~vi~gv~~~-~~~~~i~~a~~a~~----~G~d~v~~~p----P~-----~~~~~~~~i~~~~~~ia~~~~~pv~lY 133 (292)
T PRK03170 68 NGRVPVIAGTGSN-STAEAIELTKFAEK----AGADGALVVT----PY-----YNKPTQEGLYQHFKAIAEATDLPIILY 133 (292)
T ss_pred CCCCcEEeecCCc-hHHHHHHHHHHHHH----cCCCEEEECC----Cc-----CCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 3566788999863 56666666666555 6999887631 22 212221345667888888888888731
Q ss_pred --------ecCcccHHHHhh--hcceecccCCccCCH
Q 022892 94 --------VHETVQCEEVGK--VADIIQIPAFLCRQT 120 (290)
Q Consensus 94 --------~~d~~~~~~l~~--~~d~~kIgs~~~~n~ 120 (290)
.++++.+..+.+ .+-.+|-++.++.++
T Consensus 134 n~P~~~g~~l~~~~~~~L~~~p~v~giK~s~~d~~~~ 170 (292)
T PRK03170 134 NVPGRTGVDILPETVARLAEHPNIVGIKEATGDLERV 170 (292)
T ss_pred ECccccCCCCCHHHHHHHHcCCCEEEEEECCCCHHHH
Confidence 223333333333 244556665554443
No 255
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=88.47 E-value=3.5 Score=38.81 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=42.9
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s 92 (290)
++++-||+|.+. |....++++++..+ +|+++|... .|+.| ...-++-+...+++++..++|++-
T Consensus 74 ~~~~pvi~gv~~--~t~~~i~~~~~a~~----~Gadav~~~--------pP~y~-~~~~~~i~~~f~~va~~~~lpi~l 137 (303)
T PRK03620 74 AGRVPVIAGAGG--GTAQAIEYAQAAER----AGADGILLL--------PPYLT-EAPQEGLAAHVEAVCKSTDLGVIV 137 (303)
T ss_pred CCCCcEEEecCC--CHHHHHHHHHHHHH----hCCCEEEEC--------CCCCC-CCCHHHHHHHHHHHHHhCCCCEEE
Confidence 456778999885 77777777776655 699998763 12222 222134455688888888999874
No 256
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=88.44 E-value=2.4 Score=39.61 Aligned_cols=91 Identities=19% Similarity=0.151 Sum_probs=56.1
Q ss_pred hcCCeEEEeCCCCCCHHHHHHHHHHHHHcC-CCcEEEEeecC---CC-CCCC---CCCCchhHHHHHh-cCCCEEEeCCC
Q 022892 128 KTGKIINIKKGQFCASSVMVNSAEKVRLAG-NPNVMVCERGT---MF-GYND---LIVDPRNLEWMRE-ANCPVVADVTH 198 (290)
Q Consensus 128 ~~~~PVilstG~~~tl~e~~~Ave~i~~~G-n~~i~L~~~gs---~~-~y~~---~~~dL~~i~~lk~-~~~pV~~D~sH 198 (290)
+.+.||+++-+.. +.++|..+++.+...| -+ .+=+.+++ .. ++.. ...-...+..+|+ .++||.+--+-
T Consensus 89 ~~~~p~i~si~g~-~~~~~~~~a~~~~~aG~~D-~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 166 (301)
T PRK07259 89 EFDTPIIANVAGS-TEEEYAEVAEKLSKAPNVD-AIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP 166 (301)
T ss_pred ccCCcEEEEeccC-CHHHHHHHHHHHhccCCcC-EEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4578999999877 8999999999998887 44 33333322 01 1100 1111244555666 58899873321
Q ss_pred CCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 199 SLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 199 s~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
+. +....++..+.+.|++|+.+
T Consensus 167 ~~-------------------~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 167 NV-------------------TDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred Cc-------------------hhHHHHHHHHHHcCCCEEEE
Confidence 11 11245677788899998654
No 257
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=88.44 E-value=3.5 Score=37.96 Aligned_cols=93 Identities=15% Similarity=0.089 Sum_probs=54.8
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT- 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s- 92 (290)
++++-||+|.+.. +.+..+++|++ ++++|+++|+... |+.|. ..-++-++..+++++..++|++-
T Consensus 64 ~~~~~vi~gv~~~-~~~~~i~~a~~----a~~~Gad~v~v~p--------P~y~~-~~~~~~~~~~~~ia~~~~~pi~iY 129 (281)
T cd00408 64 AGRVPVIAGVGAN-STREAIELARH----AEEAGADGVLVVP--------PYYNK-PSQEGIVAHFKAVADASDLPVILY 129 (281)
T ss_pred CCCCeEEEecCCc-cHHHHHHHHHH----HHHcCCCEEEECC--------CcCCC-CCHHHHHHHHHHHHhcCCCCEEEE
Confidence 3567899999873 55555555555 4557999987631 22122 22134566788888888999873
Q ss_pred -------eecCcccHHHHhh--hcceecccCCccCCH
Q 022892 93 -------DVHETVQCEEVGK--VADIIQIPAFLCRQT 120 (290)
Q Consensus 93 -------~~~d~~~~~~l~~--~~d~~kIgs~~~~n~ 120 (290)
..++++.+..|.+ .+-.+|..+.++.+.
T Consensus 130 n~P~~tg~~l~~~~~~~L~~~~~v~giK~s~~d~~~~ 166 (281)
T cd00408 130 NIPGRTGVDLSPETIARLAEHPNIVGIKDSSGDLDRL 166 (281)
T ss_pred ECccccCCCCCHHHHHHHhcCCCEEEEEeCCCCHHHH
Confidence 2334444444443 255666666555443
No 258
>PRK08999 hypothetical protein; Provisional
Probab=88.38 E-value=22 Score=33.21 Aligned_cols=153 Identities=7% Similarity=-0.002 Sum_probs=87.6
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV 94 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~ 94 (290)
.++|+|..+....+ ...++..+++.+ .|+.+|-.- .| . .....+..-.+.+++.|+++|++++..
T Consensus 130 p~ly~it~~~~~~~-~~~~~~~~~~l~----~g~~~vqlR--~k--~-----~~~~~~~~~~~~l~~~~~~~~~~liin- 194 (312)
T PRK08999 130 PDTYLITPEGEDGD-AAFLARLERALA----AGIRLIQLR--AP--Q-----LPPAAYRALARAALGLCRRAGAQLLLN- 194 (312)
T ss_pred CCEEEEECcccccc-HHHHHHHHHHHH----CCCcEEEEe--CC--C-----CCHHHHHHHHHHHHHHHHHhCCEEEEE-
Confidence 47899988754211 123444444443 587765431 11 0 000012355677999999999998876
Q ss_pred cCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC-C
Q 022892 95 HETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFG-Y 172 (290)
Q Consensus 95 ~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~-y 172 (290)
+.++.+.+ .+|-+-+|..++..... +.. ..++.|.+|+ . +.+|+..|.+ .|-+.+.+-+.-.+.. .
T Consensus 195 ---d~~~la~~~~~~GvHl~~~d~~~~~~-r~~-~~~~~ig~S~--h-~~~~~~~a~~----~~~dyi~~gpvf~t~tk~ 262 (312)
T PRK08999 195 ---GDPELAEDLGADGVHLTSAQLAALAA-RPL-PAGRWVAASC--H-DAEELARAQR----LGVDFAVLSPVQPTASHP 262 (312)
T ss_pred ---CcHHHHHhcCCCEEEcChhhcChHhh-ccC-CCCCEEEEec--C-CHHHHHHHHh----cCCCEEEECCCcCCCCCC
Confidence 23555555 58888888877754333 221 2245666776 3 8898877643 4666666654322110 1
Q ss_pred CCCCCCchhHHHHHh-cCCCEEE
Q 022892 173 NDLIVDPRNLEWMRE-ANCPVVA 194 (290)
Q Consensus 173 ~~~~~dL~~i~~lk~-~~~pV~~ 194 (290)
....+.+..+..+++ +++||+.
T Consensus 263 ~~~~~g~~~~~~~~~~~~~Pv~A 285 (312)
T PRK08999 263 GAAPLGWEGFAALIAGVPLPVYA 285 (312)
T ss_pred CCCCCCHHHHHHHHHhCCCCEEE
Confidence 112345666777776 7899865
No 259
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=88.21 E-value=13 Score=34.75 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=41.8
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s 92 (290)
++++-||||.++. +.+.++++|++..+ +|+|+|... .|+.|. +.-++-++.++++++..++|++-
T Consensus 71 ~~~~~viagvg~~-~t~~ai~~a~~a~~----~Gad~v~v~--------~P~y~~-~~~~~l~~~f~~va~a~~lPv~i 135 (293)
T PRK04147 71 KGKVKLIAQVGSV-NTAEAQELAKYATE----LGYDAISAV--------TPFYYP-FSFEEICDYYREIIDSADNPMIV 135 (293)
T ss_pred CCCCCEEecCCCC-CHHHHHHHHHHHHH----cCCCEEEEe--------CCcCCC-CCHHHHHHHHHHHHHhCCCCEEE
Confidence 4667899999863 56666666666544 699998753 122222 22134466788888888888774
No 260
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=88.20 E-value=11 Score=34.41 Aligned_cols=47 Identities=4% Similarity=-0.065 Sum_probs=26.6
Q ss_pred HHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 022892 122 LLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 122 lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
+.+.+.+.|..+.+.+.....+.....+++.+...+.+++-++.-..
T Consensus 143 l~~~A~~~GV~i~iE~~~~~~~~~~~~~~~ll~~v~~~~lgl~~D~~ 189 (283)
T PRK13209 143 SVELASRASVTLAFEIMDTPFMNSISKALGYAHYLNSPWFQLYPDIG 189 (283)
T ss_pred HHHHHHHhCCEEEEeecCCcccCCHHHHHHHHHHhCCCccceEeccc
Confidence 33445556788888775332333344455555555666676666554
No 261
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=88.09 E-value=3.8 Score=39.32 Aligned_cols=99 Identities=23% Similarity=0.259 Sum_probs=60.5
Q ss_pred CCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCCCchhHHHH-Hh--cCCCEE
Q 022892 118 RQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNLEWM-RE--ANCPVV 193 (290)
Q Consensus 118 ~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~~~~dL~~i~~l-k~--~~~pV~ 193 (290)
..+..|+ +.+..||++| |.. +-+|.+.|+| .|-.-|++-.-|... .|-...+ .+++.. +. -.+||-
T Consensus 213 ~Di~wLr--~~T~LPIvvK-Gil-t~eDA~~Ave----~G~~GIIVSNHGgRQlD~vpAtI--~~L~Evv~aV~~ri~V~ 282 (363)
T KOG0538|consen 213 KDIKWLR--SITKLPIVVK-GVL-TGEDARKAVE----AGVAGIIVSNHGGRQLDYVPATI--EALPEVVKAVEGRIPVF 282 (363)
T ss_pred hhhHHHH--hcCcCCeEEE-eec-ccHHHHHHHH----hCCceEEEeCCCccccCcccchH--HHHHHHHHHhcCceEEE
Confidence 3444444 5678899997 555 7889888887 466667776666642 2322222 233332 22 258998
Q ss_pred EeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCC
Q 022892 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA 248 (290)
Q Consensus 194 ~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka 248 (290)
+|.-- ..| ..+.. |.|+||.|++|-+-+--.-+
T Consensus 283 lDGGV----------------R~G-----~DVlK-ALALGAk~VfiGRP~v~gLA 315 (363)
T KOG0538|consen 283 LDGGV----------------RRG-----TDVLK-ALALGAKGVFIGRPIVWGLA 315 (363)
T ss_pred EecCc----------------ccc-----hHHHH-HHhcccceEEecCchheeec
Confidence 87321 124 45554 69999999999876644333
No 262
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=87.96 E-value=8.7 Score=37.44 Aligned_cols=127 Identities=18% Similarity=0.277 Sum_probs=85.4
Q ss_pred CCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEE
Q 022892 13 AAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIV 91 (290)
Q Consensus 13 ~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~ 91 (290)
.+++++|-|..+.- +..++.++.|++ +|+|++..++=. +.. +..+..+++++++++ ++++
T Consensus 93 ~~~~l~V~aavg~~---~~~~er~~~L~~----agvD~ivID~a~-----------g~s-~~~~~~ik~ik~~~~~~~vi 153 (352)
T PF00478_consen 93 EKGRLLVAAAVGTR---DDDFERAEALVE----AGVDVIVIDSAH-----------GHS-EHVIDMIKKIKKKFPDVPVI 153 (352)
T ss_dssp TTSCBCEEEEEESS---TCHHHHHHHHHH----TT-SEEEEE-SS-----------TTS-HHHHHHHHHHHHHSTTSEEE
T ss_pred ccccceEEEEecCC---HHHHHHHHHHHH----cCCCEEEccccC-----------ccH-HHHHHHHHHHHHhCCCceEE
Confidence 45677888777652 345889999988 599998765211 222 566778888889998 8888
Q ss_pred E-eecCcccHHHHhh-hcceecccCC---ccC----------CHHHHHHHH----hcCCeEEEeCCCCCCHHHHHHHHHH
Q 022892 92 T-DVHETVQCEEVGK-VADIIQIPAF---LCR----------QTDLLVAAA----KTGKIINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 92 s-~~~d~~~~~~l~~-~~d~~kIgs~---~~~----------n~~lL~~~a----~~~~PVilstG~~~tl~e~~~Ave~ 152 (290)
. -+-+.+.+..|.+ .+|.+|||=+ -|+ |..-+..++ +.+.|||-.=|.. +..++-.|+.
T Consensus 154 aGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~-~sGDi~KAla- 231 (352)
T PF00478_consen 154 AGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIR-TSGDIVKALA- 231 (352)
T ss_dssp EEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-S-SHHHHHHHHH-
T ss_pred ecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcC-cccceeeeee-
Confidence 8 8888889988887 7999999833 333 222233333 3688999999999 9999888753
Q ss_pred HHHcCCCcEEE
Q 022892 153 VRLAGNPNVMV 163 (290)
Q Consensus 153 i~~~Gn~~i~L 163 (290)
.|.+-+++
T Consensus 232 ---~GAd~VMl 239 (352)
T PF00478_consen 232 ---AGADAVML 239 (352)
T ss_dssp ---TT-SEEEE
T ss_pred ---ecccceee
Confidence 56655554
No 263
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=87.95 E-value=26 Score=33.60 Aligned_cols=92 Identities=18% Similarity=0.109 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHh---cCCcEEEeecCcccH---HHHh---h-h-cceec--ccCC------ccC-CHHHH----HHH-H
Q 022892 73 VEGLKILEKVKIA---YDIPIVTDVHETVQC---EEVG---K-V-ADIIQ--IPAF------LCR-QTDLL----VAA-A 127 (290)
Q Consensus 73 ~~~l~~L~~~~~~---~Gi~~~s~~~d~~~~---~~l~---~-~-~d~~k--Igs~------~~~-n~~lL----~~~-a 127 (290)
..-+++++..+.+ .|+.+.....-+..- +++. + . +|++- |.|- ++. +.+++ +++ +
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~ 158 (310)
T COG0167 79 DAFLEELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKA 158 (310)
T ss_pred HHHHHHHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHh
Confidence 3445556666666 577888877763322 2221 1 1 24332 2332 333 44433 343 3
Q ss_pred hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEee
Q 022892 128 KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCER 166 (290)
Q Consensus 128 ~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~ 166 (290)
.+.+||++|-.. +.+++.+.++.+.+.|-+-+++...
T Consensus 159 ~~~~Pv~vKl~P--~~~di~~iA~~~~~~g~Dgl~~~NT 195 (310)
T COG0167 159 ATKVPVFVKLAP--NITDIDEIAKAAEEAGADGLIAINT 195 (310)
T ss_pred cccCceEEEeCC--CHHHHHHHHHHHHHcCCcEEEEEee
Confidence 467999999998 7999999999999888776766663
No 264
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=87.90 E-value=6.8 Score=38.59 Aligned_cols=90 Identities=21% Similarity=0.137 Sum_probs=54.2
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC-C------CCCchhH----HHHHh-cCCCEEEeCC
Q 022892 130 GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND-L------IVDPRNL----EWMRE-ANCPVVADVT 197 (290)
Q Consensus 130 ~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~-~------~~dL~~i----~~lk~-~~~pV~~D~s 197 (290)
.+|||.|-....+.+||.+.++.+...|.+-+-| --|.++.+. . --|...+ .++|+ ..+||.+=-+
T Consensus 113 ~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iEL--NiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLs 190 (385)
T PLN02495 113 DRILIASIMEEYNKDAWEEIIERVEETGVDALEI--NFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMT 190 (385)
T ss_pred CCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEE--ECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeC
Confidence 4699999954238999999999998877543333 111111111 0 0123333 44466 6789877111
Q ss_pred CCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 198 HSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 198 Hs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
- . -..+..++.+|...||+|+++=
T Consensus 191 P------------------n-~t~i~~ia~aa~~~Gadgi~li 214 (385)
T PLN02495 191 P------------------N-ITDITQPARVALKSGCEGVAAI 214 (385)
T ss_pred C------------------C-hhhHHHHHHHHHHhCCCEEEEe
Confidence 0 0 1113678888999999998763
No 265
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=87.88 E-value=21 Score=32.51 Aligned_cols=162 Identities=19% Similarity=0.183 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEE-------------EeecCcccH
Q 022892 34 RMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIV-------------TDVHETVQC 100 (290)
Q Consensus 34 e~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~-------------s~~~d~~~~ 100 (290)
+.--+|..+|...|+..++-. +.+-++.......+|++ -|||- .++
T Consensus 33 ~iv~~mA~Aa~~gGAvgiR~~--------------------gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptl-keV 91 (229)
T COG3010 33 EIVAAMALAAEQGGAVGIRIE--------------------GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTL-KEV 91 (229)
T ss_pred hHHHHHHHHHHhCCcceEeec--------------------chhhHHHHHhhCCCCeEEEEecCCCCCCceecccH-HHH
Confidence 444455556666788777643 33334444444444443 23332 234
Q ss_pred HHHhh-hcceecccCCccCCH--HHHHHHHhcCCe-EEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC--
Q 022892 101 EEVGK-VADIIQIPAFLCRQT--DLLVAAAKTGKI-INIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND-- 174 (290)
Q Consensus 101 ~~l~~-~~d~~kIgs~~~~n~--~lL~~~a~~~~P-VilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~-- 174 (290)
+.|.+ .++++.+-+..=.-. ++=+.+.+.+.| .++-..-+ |++|.++|.+ .|-+-|-=...|.. +|+.
T Consensus 92 d~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~S-t~ee~l~a~~----~G~D~IGTTLsGYT-~~~~~~ 165 (229)
T COG3010 92 DALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCS-TFEEGLNAHK----LGFDIIGTTLSGYT-GYTEKP 165 (229)
T ss_pred HHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccC-CHHHHHHHHH----cCCcEEeccccccc-CCCCCC
Confidence 44444 566666554433211 222223333333 45555666 9999998854 46544433344432 2222
Q ss_pred CCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 175 LIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 175 ~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.+-|+.-+..+.+.+++|+.-.-. --|..+..|...||+++++-.-+|
T Consensus 166 ~~pDf~lvk~l~~~~~~vIAEGr~----------------------~tP~~Ak~a~~~Ga~aVvVGsAIT 213 (229)
T COG3010 166 TEPDFQLVKQLSDAGCRVIAEGRY----------------------NTPEQAKKAIEIGADAVVVGSAIT 213 (229)
T ss_pred CCCcHHHHHHHHhCCCeEEeeCCC----------------------CCHHHHHHHHHhCCeEEEECcccC
Confidence 356777888887789999873221 117888899999999998877664
No 266
>PLN02692 alpha-galactosidase
Probab=87.86 E-value=2 Score=42.66 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHHH-HHHcCCCEEeccccccCC-CCCcccCC--CCChhHHHHHHHHHHHhcCCcEEE-------ee--
Q 022892 28 SEEHIMRMAKHIKSI-STKVGLPLVFKSSFDKAN-RTSSKSFR--GPGMVEGLKILEKVKIAYDIPIVT-------DV-- 94 (290)
Q Consensus 28 n~~~~le~Ak~L~~~-a~~~G~~~V~~~~~~k~~-rts~~~~~--g~~~~~~l~~L~~~~~~~Gi~~~s-------~~-- 94 (290)
|++..++.|..++.. -+++|...|-....+... |...+.+. .-.+..|++.|.++.++.|+.|-- +.
T Consensus 71 ~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKfGIy~d~G~~tC~~ 150 (412)
T PLN02692 71 DEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKLGIYSDAGYFTCSK 150 (412)
T ss_pred CHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCceEEEecCCccccCC
Confidence 778888888877653 234677766665544322 32222221 111247899999999999998742 11
Q ss_pred cCcc-------cHHHHhh-hcceecccCCcc--C-----CHHHHHHHHhcCCeEEEeC
Q 022892 95 HETV-------QCEEVGK-VADIIQIPAFLC--R-----QTDLLVAAAKTGKIINIKK 137 (290)
Q Consensus 95 ~d~~-------~~~~l~~-~~d~~kIgs~~~--~-----n~~lL~~~a~~~~PVilst 137 (290)
..|- .++.+++ .+|++|+-.... + -..+-+++.++|+||++|-
T Consensus 151 ~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~Sl 208 (412)
T PLN02692 151 TMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDGSKPTVRYPVMTRALMKAGRPIFFSL 208 (412)
T ss_pred CCCCchHHHHHHHHHHHhcCCCEEeccccCCCCcchhHHHHHHHHHHHHhCCCeEEEe
Confidence 1233 2344556 699999865432 1 1135677889999999874
No 267
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=87.69 E-value=22 Score=32.57 Aligned_cols=161 Identities=21% Similarity=0.242 Sum_probs=93.2
Q ss_pred HHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCcc-CCHH
Q 022892 43 STKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLC-RQTD 121 (290)
Q Consensus 43 a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~-~n~~ 121 (290)
..+.|.|+++-..-. +.. ++.+..+.+..++..+|++-+|-++.++ ...+|++-++|=.- +|..
T Consensus 28 ~~~~gtdai~vGGS~-----------~vt-~~~~~~~v~~ik~~~lPvilfp~~~~~i---~~~aDa~l~~svlNs~~~~ 92 (232)
T PRK04169 28 ICESGTDAIIVGGSD-----------GVT-EENVDELVKAIKEYDLPVILFPGNIEGI---SPGADAYLFPSVLNSRNPY 92 (232)
T ss_pred HHhcCCCEEEEcCCC-----------ccc-hHHHHHHHHHHhcCCCCEEEeCCCcccc---CcCCCEEEEEEEecCCCcc
Confidence 344799998875322 111 3455555555555999999998887765 44678777776433 3332
Q ss_pred HH--------HHHHhcCC---e---EEE---------eCCCC--CCHHHHHHHHHHHHH-cCCCcEEEEeecCCCCCCCC
Q 022892 122 LL--------VAAAKTGK---I---INI---------KKGQF--CASSVMVNSAEKVRL-AGNPNVMVCERGTMFGYNDL 175 (290)
Q Consensus 122 lL--------~~~a~~~~---P---Vil---------stG~~--~tl~e~~~Ave~i~~-~Gn~~i~L~~~gs~~~y~~~ 175 (290)
.+ ..+.+.+. | +++ .+... .+.+|+..+...-.. -|- +++.++-|+.++.+
T Consensus 93 ~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~va~~~~~~~~~~~~~~~~~~~~lA~~~~g~-~~vYle~gs~~g~~-- 169 (232)
T PRK04169 93 WIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSKVAVVGTAAPIPLDKPDIAAYAALAAEYLGM-PIVYLEYGGGAGDP-- 169 (232)
T ss_pred hHhhHHHHHHHHHhhcCcEECceEEEEECCCCeeeeeeccccCCCChHHHHHHHHHHHHHcCC-CeEEEECCCCCCCC--
Confidence 22 12222222 2 222 22221 244555555443222 233 58888887754433
Q ss_pred CCCchhHHHHHh-cCC-CEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 176 IVDPRNLEWMRE-ANC-PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 176 ~~dL~~i~~lk~-~~~-pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.|...+..+++ .+. ||.+- +|.|. ...+..+...||||+++=+-+.
T Consensus 170 -~~~e~I~~v~~~~~~~pvivG--------------------GGIrs--~e~a~~~l~~GAD~VVVGSai~ 217 (232)
T PRK04169 170 -VPPEMVKAVKKALDITPLIYG--------------------GGIRS--PEQARELMAAGADTIVVGNIIE 217 (232)
T ss_pred -CCHHHHHHHHHhcCCCcEEEE--------------------CCCCC--HHHHHHHHHhCCCEEEEChHHh
Confidence 47778888888 777 98771 12111 4456677889999999988774
No 268
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=87.52 E-value=1.1 Score=35.10 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=43.1
Q ss_pred HHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCC-C-CCCCChHH
Q 022892 183 EWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD-G-PTQWPLRN 260 (290)
Q Consensus 183 ~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D-~-~~sl~p~~ 260 (290)
..+++.++.|++|+.|+. ++ ..+....-.+|++ +++-|..+|...+. + +.... +.
T Consensus 15 ~~~~~~~~kivvD~~~G~---------------~~-----~~~~~ll~~lg~~--~~~~n~~~d~~f~~~~~p~p~~-~~ 71 (104)
T PF02879_consen 15 EAIKKSGLKIVVDCMNGA---------------GS-----DILPRLLERLGCD--VIELNCDPDPDFPNQHAPNPEE-ES 71 (104)
T ss_dssp HHHHHTTCEEEEE-TTST---------------TH-----HHHHHHHHHTTCE--EEEESSS-STTGTTTSTSSTST-TT
T ss_pred hhcccCCCEEEEECCCCH---------------HH-----HHHHHHHHHcCCc--EEEEeccccccccccccccccc-ch
Confidence 344556789999999995 12 4555556789997 88899888887764 2 22222 56
Q ss_pred HHHHHHHHHHHH
Q 022892 261 LEELLEELVAIA 272 (290)
Q Consensus 261 l~~lv~~ir~~~ 272 (290)
+..+.+.+++..
T Consensus 72 l~~~~~~v~~~~ 83 (104)
T PF02879_consen 72 LQRLIKIVRESG 83 (104)
T ss_dssp THHHHHHHHHST
T ss_pred hHHHHHHhhccC
Confidence 677666666543
No 269
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=87.49 E-value=25 Score=32.97 Aligned_cols=228 Identities=20% Similarity=0.242 Sum_probs=119.6
Q ss_pred hhHHhhhcCCCC----eEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCC-Cc---cc----C-CCCC
Q 022892 5 TALFNQLKAAEP----FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRT-SS---KS----F-RGPG 71 (290)
Q Consensus 5 ~~~~~~i~~~~~----~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rt-s~---~~----~-~g~~ 71 (290)
+..|......++ +|+.+|=- |.+.+++.++.|.+ .|+|++-...=..+|-- .| .+ . .|..
T Consensus 5 ~~~F~~l~~~~~~a~i~yit~GdP---~~e~s~e~i~~L~~----~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t 77 (265)
T COG0159 5 DQKFAQLKAENRGALIPYVTAGDP---DLETSLEIIKTLVE----AGADILELGVPFSDPVADGPTIQAAHLRALAAGVT 77 (265)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCC---CHHHHHHHHHHHHh----CCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCC
Confidence 445666664443 34444421 66888888888888 59999876541112210 00 00 0 1333
Q ss_pred hhHHHHHHHHHHHh-cCCcEEE-eecCcc----cHH---HHhh-hcceecccCCccCCH-HHHHHHHhcCC-eEEEeCCC
Q 022892 72 MVEGLKILEKVKIA-YDIPIVT-DVHETV----QCE---EVGK-VADIIQIPAFLCRQT-DLLVAAAKTGK-IINIKKGQ 139 (290)
Q Consensus 72 ~~~~l~~L~~~~~~-~Gi~~~s-~~~d~~----~~~---~l~~-~~d~~kIgs~~~~n~-~lL~~~a~~~~-PVilstG~ 139 (290)
+++-|+.++++.++ .++|++- +-+++- .-. .+.+ .+|-+-|+---..-- ++...+.+.+. ||.|-..+
T Consensus 78 ~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPt 157 (265)
T COG0159 78 LEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPT 157 (265)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 45667777787744 6767665 444442 112 2333 466666665444322 46566666766 78888887
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCC---CCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccC
Q 022892 140 FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDL---IVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVAS 215 (290)
Q Consensus 140 ~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~---~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~ 215 (290)
+ +.+-++..++ ....-+.++-|....+-... .+. ..+..+|+ .++||++ --++
T Consensus 158 t-~~~rl~~i~~----~a~GFiY~vs~~GvTG~~~~~~~~~~-~~v~~vr~~~~~Pv~v--GFGI--------------- 214 (265)
T COG0159 158 T-PDERLKKIAE----AASGFIYYVSRMGVTGARNPVSADVK-ELVKRVRKYTDVPVLV--GFGI--------------- 214 (265)
T ss_pred C-CHHHHHHHHH----hCCCcEEEEecccccCCCcccchhHH-HHHHHHHHhcCCCeEE--ecCc---------------
Confidence 7 6555555443 22234666666222222221 122 56777888 7899755 1121
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 216 GGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 216 ~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
.. ++.+...... |||+++=+-+.- .+.++...-..+++++|++.++.
T Consensus 215 s~-----~e~~~~v~~~-ADGVIVGSAiV~--~i~~~~~~~~~~~~~~l~~~l~~ 261 (265)
T COG0159 215 SS-----PEQAAQVAEA-ADGVIVGSAIVK--IIEEGLDEEALEELRALVKELKA 261 (265)
T ss_pred CC-----HHHHHHHHHh-CCeEEEcHHHHH--HHHhccchhhHHHHHHHHHHHHH
Confidence 11 3445455555 999887654410 00111112234566666666654
No 270
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=87.43 E-value=9.1 Score=38.99 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=78.3
Q ss_pred CCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC--CcE
Q 022892 13 AAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD--IPI 90 (290)
Q Consensus 13 ~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G--i~~ 90 (290)
..+++.|.++.+. +..++.|+.|++. |+|++... +++. +. ...++.++++.++++ +++
T Consensus 228 ~~grL~V~~av~~----~~~~~ra~~Lv~a----Gvd~i~vd-------~a~g-~~----~~~~~~i~~ir~~~~~~~~V 287 (502)
T PRK07107 228 SSKRYVVGAGINT----RDYAERVPALVEA----GADVLCID-------SSEG-YS----EWQKRTLDWIREKYGDSVKV 287 (502)
T ss_pred hccCeeeeeccCh----hhHHHHHHHHHHh----CCCeEeec-------Cccc-cc----HHHHHHHHHHHHhCCCCceE
Confidence 4678888888764 3478999999984 99988753 1111 11 233555666666665 566
Q ss_pred EE-eecCcccHHHHhh-hcceecc----cCCccC---------CHHHHHHHHh--------cC--CeEEEeCCCCCCHHH
Q 022892 91 VT-DVHETVQCEEVGK-VADIIQI----PAFLCR---------QTDLLVAAAK--------TG--KIINIKKGQFCASSV 145 (290)
Q Consensus 91 ~s-~~~d~~~~~~l~~-~~d~~kI----gs~~~~---------n~~lL~~~a~--------~~--~PVilstG~~~tl~e 145 (290)
.. ++.+++.+..+.+ .+|+++| ||-..+ +...+.+++. .+ +|||..-|.- +..+
T Consensus 288 ~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir-~~gd 366 (502)
T PRK07107 288 GAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIV-YDYH 366 (502)
T ss_pred EeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCC-chhH
Confidence 55 8999999999888 7999988 322222 2233333333 14 7999999988 8888
Q ss_pred HHHHHH
Q 022892 146 MVNSAE 151 (290)
Q Consensus 146 ~~~Ave 151 (290)
+..|+.
T Consensus 367 i~KAla 372 (502)
T PRK07107 367 MTLALA 372 (502)
T ss_pred HHHHHH
Confidence 877754
No 271
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=87.31 E-value=25 Score=34.95 Aligned_cols=179 Identities=12% Similarity=0.071 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCC-------C---------hhHHHHHHHHHHHhcCCcEE
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGP-------G---------MVEGLKILEKVKIAYDIPIV 91 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~-------~---------~~~~l~~L~~~~~~~Gi~~~ 91 (290)
+.+.-+++|++|-++ |++.+=-..+. .+++.|+.. + ...-.+.=.+.+.+.|++.+
T Consensus 22 s~e~Ki~Ia~~Ld~l----Gv~~IE~g~p~----~s~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~~~~i 93 (409)
T COG0119 22 SVEEKIRIAKALDDL----GVDYIEAGFPV----ASPGDFEFVRAIAEKAGLFICALIAALARAIKRDIEALLEAGVDRI 93 (409)
T ss_pred CHHHHHHHHHHHHHc----CCCEEEEeCCc----CChhhHHHHHHHHHhcCcccchhhhhhHHhHHhhHHHHHhCCCCEE
Confidence 788899999999884 99887554332 222221100 0 00111112233345555554
Q ss_pred EeecCcccHHHHhhhcceecccCCccCCH----HHHHHHHhcCCeEE--EeCCCCCCHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 92 TDVHETVQCEEVGKVADIIQIPAFLCRQT----DLLVAAAKTGKIIN--IKKGQFCASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 92 s~~~d~~~~~~l~~~~d~~kIgs~~~~n~----~lL~~~a~~~~PVi--lstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
..+.....+..- +++...-..+. +.++++-..+.++. ..-....+++-....++.+...|...|.|+.
T Consensus 94 ~if~~tSd~h~~------~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~D 167 (409)
T COG0119 94 HIFIATSDLHLR------YKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINLPD 167 (409)
T ss_pred EEEEcCCHHHHH------HHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEECC
Confidence 443333322211 11111111222 33455667788888 4444444677777777777766777888887
Q ss_pred ecCCCCCCCCCCCchhHHHHHh-cC--CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 166 RGTMFGYNDLIVDPRNLEWMRE-AN--CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 166 ~gs~~~y~~~~~dL~~i~~lk~-~~--~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
.+.. ..|.. --.-+..+++ .. ++|.+ +-|-- ..+...-+.+|+..||+ .+|.-
T Consensus 168 TvG~-~~P~~--~~~~i~~l~~~v~~~~~l~~-H~HnD------------------~G~AvANslaAv~aGa~--~v~~T 223 (409)
T COG0119 168 TVGV-ATPNE--VADIIEALKANVPNKVILSV-HCHND------------------LGMAVANSLAAVEAGAD--QVEGT 223 (409)
T ss_pred CcCc-cCHHH--HHHHHHHHHHhCCCCCeEEE-EecCC------------------cchHHHHHHHHHHcCCc--EEEEe
Confidence 7653 22221 1245666776 54 77777 55531 22335557789999998 88876
Q ss_pred CC
Q 022892 243 DD 244 (290)
Q Consensus 243 ~t 244 (290)
+.
T Consensus 224 vn 225 (409)
T COG0119 224 VN 225 (409)
T ss_pred cc
Confidence 64
No 272
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=87.28 E-value=27 Score=33.03 Aligned_cols=176 Identities=18% Similarity=0.198 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh----hc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK----VA 107 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~----~~ 107 (290)
.+++++.+++.|++.+.+++.-- .. ...+-.+...-...++.++++.++||+----+-...+.+.+ ..
T Consensus 27 n~e~~~avi~AAe~~~sPvIl~~-~~-------~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~Gf 98 (283)
T PRK07998 27 NLETTISILNAIERSGLPNFIQI-AP-------TNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGF 98 (283)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEC-cH-------hHHhhCCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999877532 21 11121233344557888999999999876655555655544 22
Q ss_pred ceecc-cCCcc--CCHHHHHH----HHhcCCeEEEeCCCCC-----------CHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 108 DIIQI-PAFLC--RQTDLLVA----AAKTGKIINIKKGQFC-----------ASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 108 d~~kI-gs~~~--~n~~lL~~----~a~~~~PVilstG~~~-----------tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
+-+-+ ||..- .|..+-++ +-..|.||=..-|.-+ ...+-..|.+.+...|-+ ..-+--|+.
T Consensus 99 tSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD-~LAvaiGt~ 177 (283)
T PRK07998 99 TSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCD-MLAVSIGNV 177 (283)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcC-eeehhcccc
Confidence 32222 33322 35544433 4456888722222210 123455567777777754 444445554
Q ss_pred CC-CCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 170 FG-YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 170 ~~-y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
.+ |....+|+..+..+++ .++|+++ |+- | |.. ....+.|+..|++.+
T Consensus 178 HG~Y~~p~l~~~~l~~I~~~~~vPLVl---HGg-----------S----G~~---~e~~~~ai~~Gi~Ki 226 (283)
T PRK07998 178 HGLEDIPRIDIPLLKRIAEVSPVPLVI---HGG-----------S----GIP---PEILRSFVNYKVAKV 226 (283)
T ss_pred ccCCCCCCcCHHHHHHHHhhCCCCEEE---eCC-----------C----CCC---HHHHHHHHHcCCcEE
Confidence 33 6445578888888888 7899887 752 1 211 233467899998754
No 273
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=87.26 E-value=2.8 Score=37.56 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeecCCC----CCCC---CCCC--chhHHHHHhcCCCEEEeCCCCCCCCCCCccCCC
Q 022892 141 CASSVMVNSAEKVRLAGNPNVMVCERGTMF----GYND---LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGG 211 (290)
Q Consensus 141 ~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~----~y~~---~~~d--L~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~ 211 (290)
...++++.+++.+...|.+.+.++-..+.. .... +.++ ...+...|+.+..|.+.+.++.
T Consensus 64 ~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~----------- 132 (237)
T PF00682_consen 64 ANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS----------- 132 (237)
T ss_dssp SCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-----------
T ss_pred ehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc-----------
Confidence 378999999998888898888887766531 0110 0011 1223333446777877666652
Q ss_pred CccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 022892 212 GVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIA 272 (290)
Q Consensus 212 ~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~ 272 (290)
.-..+.+..++..+..+|++.+.| +|..-.+.|++..++++.+++..
T Consensus 133 ----~~~~~~~~~~~~~~~~~g~~~i~l----------~Dt~G~~~P~~v~~lv~~~~~~~ 179 (237)
T PF00682_consen 133 ----RTDPEELLELAEALAEAGADIIYL----------ADTVGIMTPEDVAELVRALREAL 179 (237)
T ss_dssp ----GSSHHHHHHHHHHHHHHT-SEEEE----------EETTS-S-HHHHHHHHHHHHHHS
T ss_pred ----cccHHHHHHHHHHHHHcCCeEEEe----------eCccCCcCHHHHHHHHHHHHHhc
Confidence 012456667788888899984322 68888999999999999988753
No 274
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=87.21 E-value=8.6 Score=37.31 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=83.2
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE---
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--- 92 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--- 92 (290)
++.+++-.++ ++..+.+++ .|+|+|+...-.-.-|.....| . .+.|++..+++++.|..+..
T Consensus 6 ~~ell~pag~-------l~~l~~ai~----~GADaVY~G~~~~~~R~~a~nf---s-~~~l~e~i~~ah~~gkk~~V~~N 70 (347)
T COG0826 6 KPELLAPAGN-------LEDLKAAIA----AGADAVYIGEKEFGLRRRALNF---S-VEDLAEAVELAHSAGKKVYVAVN 70 (347)
T ss_pred cceeecCCCC-------HHHHHHHHH----cCCCEEEeCCcccccccccccC---C-HHHHHHHHHHHHHcCCeEEEEec
Confidence 3455555544 455555555 5999998863211012211112 2 46699999999999996554
Q ss_pred eecCcccHHHHhhh-cceecccCCc--cCCHHHHHHHHhcC--CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec
Q 022892 93 DVHETVQCEEVGKV-ADIIQIPAFL--CRQTDLLVAAAKTG--KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG 167 (290)
Q Consensus 93 ~~~d~~~~~~l~~~-~d~~kIgs~~--~~n~~lL~~~a~~~--~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~g 167 (290)
+.+.....+.+.+. -....+|..- +...-++..+...+ .|+++|+=+..+ .+. .+++..+.|... +++-|-
T Consensus 71 ~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dpg~i~l~~e~~p~l~ih~S~q~~v~--N~~-~~~f~~~~G~~r-vVl~rE 146 (347)
T COG0826 71 TLLHNDELETLERYLDRLVELGVDAVIVADPGLIMLARERGPDLPIHVSTQANVT--NAE-TAKFWKELGAKR-VVLPRE 146 (347)
T ss_pred cccccchhhHHHHHHHHHHHcCCCEEEEcCHHHHHHHHHhCCCCcEEEeeeEecC--CHH-HHHHHHHcCCEE-EEeCcc
Confidence 34444444433332 2333444443 36777888888777 999999987744 332 345667778543 333332
Q ss_pred CCCCCCCCCCCchhHHHHHh
Q 022892 168 TMFGYNDLIVDPRNLEWMRE 187 (290)
Q Consensus 168 s~~~y~~~~~dL~~i~~lk~ 187 (290)
+.+.-|..+++
T Consensus 147 ---------ls~~ei~~i~~ 157 (347)
T COG0826 147 ---------LSLEEIKEIKE 157 (347)
T ss_pred ---------CCHHHHHHHHH
Confidence 34455555555
No 275
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=87.14 E-value=16 Score=33.54 Aligned_cols=154 Identities=10% Similarity=0.022 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCcc--CCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLC--RQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~--~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
+....+.+...+.|+..+=-- ++-. .....++.+.+....+-+..-.-+...+++.|++
T Consensus 20 ~~k~~i~~~L~~~Gv~~iEvg-------------------~~~~~~~~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~ 80 (268)
T cd07940 20 EEKLEIARQLDELGVDVIEAG-------------------FPAASPGDFEAVKRIAREVLNAEICGLARAVKKDIDAAAE 80 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEEe-------------------CCCCCHHHHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHH
Confidence 455556666777787765321 1111 0123445555432222222222236777777776
Q ss_pred HHHHcCCCcEEEEeecCCC----CCCC---CCCC--chhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccH
Q 022892 152 KVRLAGNPNVMVCERGTMF----GYND---LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELI 222 (290)
Q Consensus 152 ~i~~~Gn~~i~L~~~gs~~----~y~~---~~~d--L~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~ 222 (290)
.....|-+.+.++-..+-. ++.. +.++ ...+...++.|+.|.|.+.++. .-..+++
T Consensus 81 ~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~---------------~~~~~~~ 145 (268)
T cd07940 81 ALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDAT---------------RTDLDFL 145 (268)
T ss_pred hCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCC---------------CCCHHHH
Confidence 4333335556665544310 0111 1111 1222333445777877555541 0124556
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 223 PCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 223 ~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
..++..+..+|++.+. ++|..-.+.|+++.++++.+++.
T Consensus 146 ~~~~~~~~~~G~~~i~----------l~DT~G~~~P~~v~~lv~~l~~~ 184 (268)
T cd07940 146 IEVVEAAIEAGATTIN----------IPDTVGYLTPEEFGELIKKLKEN 184 (268)
T ss_pred HHHHHHHHHcCCCEEE----------ECCCCCCCCHHHHHHHHHHHHHh
Confidence 6777778889998432 27999999999999999999874
No 276
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=87.08 E-value=6.3 Score=37.26 Aligned_cols=113 Identities=9% Similarity=0.065 Sum_probs=0.0
Q ss_pred cCCcc-CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH---HHHHHHhcCCcEEEe-----
Q 022892 23 PNVIE-SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI---LEKVKIAYDIPIVTD----- 93 (290)
Q Consensus 23 pcsie-n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~---L~~~~~~~Gi~~~s~----- 93 (290)
|-++| ||-.+++..++-++. |+.-||.. --.+.+++-++. +.++|+.+|+.+=.|
T Consensus 79 PV~lHLDHg~~~e~i~~ai~~----GftSVMiD------------gS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vg 142 (288)
T TIGR00167 79 PVALHLDHGASEEDCAQAVKA----GFSSVMID------------GSHEPFEENIELTKKVVERAHKMGVSVEAELGTLG 142 (288)
T ss_pred cEEEECCCCCCHHHHHHHHHc----CCCEEEec------------CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecc
Q ss_pred --------------ecCcccHHHHhh--hcceecccCCcc--------C--CHHHHHHHHh-cCCeEEEeCCCCCCHHHH
Q 022892 94 --------------VHETVQCEEVGK--VADIIQIPAFLC--------R--QTDLLVAAAK-TGKIINIKKGQFCASSVM 146 (290)
Q Consensus 94 --------------~~d~~~~~~l~~--~~d~~kIgs~~~--------~--n~~lL~~~a~-~~~PVilstG~~~tl~e~ 146 (290)
--||+++..+.+ .+|++.|+-++. . |+++|+++.+ .+.|++|-=|....-+++
T Consensus 143 g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~ 222 (288)
T TIGR00167 143 GEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEI 222 (288)
T ss_pred CccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHH
Q ss_pred HHHHH
Q 022892 147 VNSAE 151 (290)
Q Consensus 147 ~~Ave 151 (290)
..|++
T Consensus 223 ~~ai~ 227 (288)
T TIGR00167 223 KKAIS 227 (288)
T ss_pred HHHHH
No 277
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=87.01 E-value=32 Score=34.05 Aligned_cols=181 Identities=16% Similarity=0.129 Sum_probs=97.4
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEEe
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVTD 93 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s~ 93 (290)
+|+++|.-.-.. |.+.+++.+++|.+ .+..+++-. +. .|. ..|.+.++++.+. .+.+++..
T Consensus 171 ~~p~L~vALD~~-~~~~A~~i~~~l~~----~~~~~iKvG-~~--------L~~----~~G~~iVk~Lr~~~~~~~I~~D 232 (391)
T PRK13307 171 DPPYLQVALDLP-DLEEVERVLSQLPK----SDHIIIEAG-TP--------LIK----KFGLEVISKIREVRPDAFIVAD 232 (391)
T ss_pred ccceEEEecCCC-CHHHHHHHHHhccc----ccceEEEEC-HH--------HHH----HhCHHHHHHHHHhCCCCeEEEE
Confidence 455777766542 66666666666654 233333332 11 022 2445555555444 34566663
Q ss_pred --ecCcccH--HHHhh-hcceecccCCccC--CHHHHHHHHhcCCeEEE-eCCCCCCHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 94 --VHETVQC--EEVGK-VADIIQIPAFLCR--QTDLLVAAAKTGKIINI-KKGQFCASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 94 --~~d~~~~--~~l~~-~~d~~kIgs~~~~--n~~lL~~~a~~~~PVil-stG~~~tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
++|+... +.+.+ .+|++-|=+.... -...++.+-+.|+-+++ --+.. |+.|....+ .. ..+++++|
T Consensus 233 LK~~Di~~~vv~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~-tp~e~i~~l----~~-~vD~Vllh 306 (391)
T PRK13307 233 LKTLDTGNLEARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVE-DPVKLLESL----KV-KPDVVELH 306 (391)
T ss_pred ecccChhhHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCC-CHHHHHHHh----hC-CCCEEEEc
Confidence 4555544 22333 5777766654322 22355666677887777 55555 555544433 22 45788999
Q ss_pred ecCCCCCCCCCCCchhHHHHHh--cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 166 RGTMFGYNDLIVDPRNLEWMRE--ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 166 ~gs~~~y~~~~~dL~~i~~lk~--~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
++...+... --+..+..+|+ .+++|.+|..=+ ..-...++.+||+++++=+-+
T Consensus 307 t~vdp~~~~--~~~~kI~~ikk~~~~~~I~VdGGI~-----------------------~eti~~l~~aGADivVVGsaI 361 (391)
T PRK13307 307 RGIDEEGTE--HAWGNIKEIKKAGGKILVAVAGGVR-----------------------VENVEEALKAGADILVVGRAI 361 (391)
T ss_pred cccCCCccc--chHHHHHHHHHhCCCCcEEEECCcC-----------------------HHHHHHHHHcCCCEEEEeHHH
Confidence 865422111 12245556666 367787753211 233556778999988888765
Q ss_pred C
Q 022892 244 D 244 (290)
Q Consensus 244 t 244 (290)
+
T Consensus 362 f 362 (391)
T PRK13307 362 T 362 (391)
T ss_pred h
Confidence 4
No 278
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=86.96 E-value=23 Score=34.32 Aligned_cols=122 Identities=13% Similarity=0.070 Sum_probs=73.1
Q ss_pred HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC------CCCC-CCCC--chhHHHHHhcCC
Q 022892 120 TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF------GYND-LIVD--PRNLEWMREANC 190 (290)
Q Consensus 120 ~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~------~y~~-~~~d--L~~i~~lk~~~~ 190 (290)
.+.++.+.+...+.-+..-..+..++++.|++ .|-+.+.++-..|.. +-.. +.++ ...+...|+.|+
T Consensus 52 ~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~----~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~ 127 (365)
T TIGR02660 52 RAVIRAIVALGLPARLMAWCRARDADIEAAAR----CGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGL 127 (365)
T ss_pred HHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHc----CCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCC
Confidence 35567777654433333222237788776654 566677777765521 1111 1111 123333344577
Q ss_pred CEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 191 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 191 pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
.|.|.+-.+. .-..+++..++.++..+||+.+ .++|-.-.+.|.++.++++.+++
T Consensus 128 ~v~~~~ed~~---------------r~~~~~l~~~~~~~~~~Ga~~i----------~l~DT~G~~~P~~v~~lv~~l~~ 182 (365)
T TIGR02660 128 FVSVGGEDAS---------------RADPDFLVELAEVAAEAGADRF----------RFADTVGILDPFSTYELVRALRQ 182 (365)
T ss_pred EEEEeecCCC---------------CCCHHHHHHHHHHHHHcCcCEE----------EEcccCCCCCHHHHHHHHHHHHH
Confidence 7777544431 0124677788888899999832 24898899999999999999875
No 279
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=86.80 E-value=13 Score=36.63 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=26.4
Q ss_pred CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 022892 119 QTDLLVAAAKTGKIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 119 n~~lL~~~a~~~~PVilstG~~~tl~e~~~A 149 (290)
...+-+++++.|.|.++||..+.++||+..+
T Consensus 104 E~a~ArAA~~~gi~~~lSt~ss~slEeIa~~ 134 (383)
T cd03332 104 ELATARAAAELGVPYILSTASSSSIEDVAAA 134 (383)
T ss_pred HHHHHHHHHHcCCCeeecCCCCCCHHHHHhh
Confidence 3456788889999999999888899999876
No 280
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=86.75 E-value=7.8 Score=39.20 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE-eecCcccHHHHhh-h
Q 022892 30 EHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT-DVHETVQCEEVGK-V 106 (290)
Q Consensus 30 ~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s-~~~d~~~~~~l~~-~ 106 (290)
+...+.++.|.+ .|+++|....-. +.+ ...++.++++.+++ +++++. .+-..+.+..+.+ .
T Consensus 226 ~~~~~~a~~Lv~----aGvd~i~~D~a~-----------~~~-~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aG 289 (479)
T PRK07807 226 GDVAAKARALLE----AGVDVLVVDTAH-----------GHQ-EKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAG 289 (479)
T ss_pred hhHHHHHHHHHH----hCCCEEEEeccC-----------Ccc-HHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcC
Confidence 345677777776 499887764322 222 35566677777777 799999 9999999999988 7
Q ss_pred cceecccCCc----c---------CCHHHHHHHHh----cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 107 ADIIQIPAFL----C---------RQTDLLVAAAK----TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 107 ~d~~kIgs~~----~---------~n~~lL~~~a~----~~~PVilstG~~~tl~e~~~Ave 151 (290)
+|+++||=+. . -++..+..++. .+.|||--=|.. +..++..|..
T Consensus 290 ad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~-~~~~~~~al~ 350 (479)
T PRK07807 290 ADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVR-HPRDVALALA 350 (479)
T ss_pred CCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCC-CHHHHHHHHH
Confidence 9999954333 2 24445555543 589999999999 9999888765
No 281
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=86.71 E-value=0.87 Score=41.13 Aligned_cols=102 Identities=11% Similarity=0.057 Sum_probs=59.0
Q ss_pred HHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHH---------------HHhh-h
Q 022892 43 STKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCE---------------EVGK-V 106 (290)
Q Consensus 43 a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~---------------~l~~-~ 106 (290)
|.+.|++.|...-+.- +..+.. +. ...+.+..+.+.|++.|++++.+++ +...+ ...+ .
T Consensus 85 A~~~GAd~vd~vi~~~-~~~~~~-~~--~~~~~i~~v~~~~~~~gl~vIlE~~-l~~~~~~~~~~~~~I~~a~ria~e~G 159 (236)
T PF01791_consen 85 AIRLGADEVDVVINYG-ALGSGN-ED--EVIEEIAAVVEECHKYGLKVILEPY-LRGEEVADEKKPDLIARAARIAAELG 159 (236)
T ss_dssp HHHTT-SEEEEEEEHH-HHHTTH-HH--HHHHHHHHHHHHHHTSEEEEEEEEC-ECHHHBSSTTHHHHHHHHHHHHHHTT
T ss_pred HHHcCCceeeeecccc-cccccc-HH--HHHHHHHHHHHHHhcCCcEEEEEEe-cCchhhcccccHHHHHHHHHHHHHhC
Confidence 3446999988876651 000000 10 0135677788999999999999944 33333 1223 4
Q ss_pred cceecccCC-----ccCCHHHHHH-HHhcCCe----EEEeCCCCCCHHHHHHHHH
Q 022892 107 ADIIQIPAF-----LCRQTDLLVA-AAKTGKI----INIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 107 ~d~~kIgs~-----~~~n~~lL~~-~a~~~~P----VilstG~~~tl~e~~~Ave 151 (290)
+|++|.... +..+..+++. +...+.| |.++=|. +.++....++
T Consensus 160 aD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi--~~~~~~~~l~ 212 (236)
T PF01791_consen 160 ADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASGGI--DAEDFLRTLE 212 (236)
T ss_dssp -SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEESSS--SHHHHHHSHH
T ss_pred CCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeCCC--ChHHHHHHHH
Confidence 899999877 1123344444 5567889 9999997 3444444333
No 282
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=86.70 E-value=10 Score=34.82 Aligned_cols=108 Identities=12% Similarity=0.170 Sum_probs=67.5
Q ss_pred HHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeec---------CcccHHH----Hhh-hcc
Q 022892 43 STKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVH---------ETVQCEE----VGK-VAD 108 (290)
Q Consensus 43 a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~---------d~~~~~~----l~~-~~d 108 (290)
+-+.|++.|....+.. + ... + ...+.++.+.+.|+++|++++...+ +.+.+.. ..+ .+|
T Consensus 99 al~~Ga~~v~~~~~~g-~-~~~--~---~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GAD 171 (258)
T TIGR01949 99 AIRMGADAVSIHVNVG-S-DTE--W---EQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGAD 171 (258)
T ss_pred HHHCCCCEEEEEEecC-C-chH--H---HHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCC
Confidence 3346888776654432 1 000 1 1124577788999999999988433 1222222 223 599
Q ss_pred eecccCCccCCHHHHHHHHh-cCCeEEEeCCCCC-CHHHHHHHHHHHHHcCCC
Q 022892 109 IIQIPAFLCRQTDLLVAAAK-TGKIINIKKGQFC-ASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~-~~~PVilstG~~~-tl~e~~~Ave~i~~~Gn~ 159 (290)
++|++.. ...+.++.+.+ .+.||...=|... |.++...-++.+...|-.
T Consensus 172 yikt~~~--~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~ 222 (258)
T TIGR01949 172 IVKTPYT--GDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAA 222 (258)
T ss_pred EEeccCC--CCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCc
Confidence 9999743 46778888765 6899988755542 567776666666777875
No 283
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=86.69 E-value=5 Score=37.68 Aligned_cols=111 Identities=12% Similarity=0.061 Sum_probs=64.8
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s 92 (290)
++++-||+|.+.- |....+++|++ |+++|+|+|+.. .|+.| .+.-++-+.+.+++|+.. ++|++-
T Consensus 67 ~g~~pvi~gv~~~-~t~~ai~~a~~----A~~~Gad~v~v~--------pP~y~-~~~~~~l~~~f~~ia~a~~~lpv~i 132 (294)
T TIGR02313 67 AGRIPFAPGTGAL-NHDETLELTKF----AEEAGADAAMVI--------VPYYN-KPNQEALYDHFAEVADAVPDFPIII 132 (294)
T ss_pred CCCCcEEEECCcc-hHHHHHHHHHH----HHHcCCCEEEEc--------CccCC-CCCHHHHHHHHHHHHHhccCCCEEE
Confidence 4678899999862 55555555555 556799998764 12322 233134566788888888 888873
Q ss_pred --------eecCcccHHHHh-h--hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCC
Q 022892 93 --------DVHETVQCEEVG-K--VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQF 140 (290)
Q Consensus 93 --------~~~d~~~~~~l~-~--~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~ 140 (290)
..++++.+..+. + .+-.+|-.+.++.++.-+ ....+..+.+-.|..
T Consensus 133 Yn~P~~tg~~l~~~~l~~L~~~~pnv~giK~ss~d~~~~~~~--~~~~~~~~~v~~G~d 189 (294)
T TIGR02313 133 YNIPGRAAQEIAPKTMARLRKDCPNIVGAKESNKDFEHLNHL--FLEAGRDFLLFCGIE 189 (294)
T ss_pred EeCchhcCcCCCHHHHHHHHhhCCCEEEEEeCCCCHHHHHHH--HHhcCCCeEEEEcch
Confidence 233455555554 2 355667777666544322 233344555555544
No 284
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=86.65 E-value=6.9 Score=36.97 Aligned_cols=76 Identities=9% Similarity=0.070 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCcEEEee-------------------cCcccHH-HHhh-hcceecccCCcc---------CCHHHHHH
Q 022892 76 LKILEKVKIAYDIPIVTDV-------------------HETVQCE-EVGK-VADIIQIPAFLC---------RQTDLLVA 125 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~-------------------~d~~~~~-~l~~-~~d~~kIgs~~~---------~n~~lL~~ 125 (290)
-+++.++|+.+|+.+=.|+ -||+++. |+.+ .+|++.|+=+++ -|+++|++
T Consensus 117 T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~ 196 (284)
T PRK09195 117 VKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLEN 196 (284)
T ss_pred HHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHH
Confidence 3357788888887765443 2344444 4444 699988877765 47788888
Q ss_pred HHh-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 126 AAK-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 126 ~a~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
+.+ ++.|++|-=|....-+++..|++
T Consensus 197 I~~~~~vPLVLHGgSG~~~e~~~~ai~ 223 (284)
T PRK09195 197 IRQWVNIPLVLHGASGLPTKDIQQTIK 223 (284)
T ss_pred HHHHhCCCeEEecCCCCCHHHHHHHHH
Confidence 764 58898887777655566666643
No 285
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=86.63 E-value=32 Score=33.20 Aligned_cols=188 Identities=16% Similarity=0.106 Sum_probs=96.7
Q ss_pred CchhhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHH
Q 022892 2 DPSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEK 81 (290)
Q Consensus 2 ~~~~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~ 81 (290)
|.||.+. .+...-| ++|+-.- -.+=++|.+++++.|-..+..- ++ .++...+. +
T Consensus 26 dlst~~~-~~~l~~P-~~inAM~--------t~iN~~LA~~a~~~G~~~~~~k-~~--------------~e~~~~~~-r 79 (326)
T PRK05458 26 DTSVTLG-PRTFKLP-VVPANMQ--------TIIDEKIAEWLAENGYFYIMHR-FD--------------PEARIPFI-K 79 (326)
T ss_pred ccceEEC-CcEecCc-EEEeccc--------chhHHHHHHHHHHcCCEEEEec-CC--------------HHHHHHHH-H
Confidence 5566665 3334455 5554442 1444555566777785433321 22 12333333 3
Q ss_pred HHHhcCCcEEEee----cCcccHHHHhh-hc--ceecccCCccCC---HHHHHHHHhc-C-CeEEEeCCCCCCHHHHHHH
Q 022892 82 VKIAYDIPIVTDV----HETVQCEEVGK-VA--DIIQIPAFLCRQ---TDLLVAAAKT-G-KIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 82 ~~~~~Gi~~~s~~----~d~~~~~~l~~-~~--d~~kIgs~~~~n---~~lL~~~a~~-~-~PVilstG~~~tl~e~~~A 149 (290)
..+..|+.+...+ -+.+.++.+.+ .+ |++.|-+.+=.+ .++++++-+. + .||+.++ .. |.++.+.+
T Consensus 80 ~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~-V~-t~e~a~~l 157 (326)
T PRK05458 80 DMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGN-VG-TPEAVREL 157 (326)
T ss_pred hccccccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEe-cC-CHHHHHHH
Confidence 3344466443333 33344445544 34 899885544322 2345666443 3 5566543 33 88888876
Q ss_pred HHHHHHcCCCcEEEEe------ecCC--CCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcc
Q 022892 150 AEKVRLAGNPNVMVCE------RGTM--FGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRE 220 (290)
Q Consensus 150 ve~i~~~Gn~~i~L~~------~gs~--~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~ 220 (290)
.+ .|-+- +.+. |.+. .+-...+..+.++..+++ .++||+.|.-=.. +
T Consensus 158 ~~----aGad~-i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~----------------~--- 213 (326)
T PRK05458 158 EN----AGADA-TKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRT----------------H--- 213 (326)
T ss_pred HH----cCcCE-EEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCC----------------H---
Confidence 54 56533 3322 1111 011111124556777777 7899987532111 1
Q ss_pred cHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 221 LIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 221 ~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
..+. -|.++||+++|+=..|+
T Consensus 214 --~Di~-KaLa~GA~aV~vG~~~~ 234 (326)
T PRK05458 214 --GDIA-KSIRFGATMVMIGSLFA 234 (326)
T ss_pred --HHHH-HHHHhCCCEEEechhhc
Confidence 2344 56888999999998887
No 286
>PRK02227 hypothetical protein; Provisional
Probab=86.46 E-value=9.7 Score=35.14 Aligned_cols=158 Identities=13% Similarity=0.104 Sum_probs=88.2
Q ss_pred EEEeecCcccHHHHhh-hccee--cccCCc---cCCHHHHHHHH---hcCCeEEEeCCCC-CCHHHHHHHHHHHHHcCCC
Q 022892 90 IVTDVHETVQCEEVGK-VADII--QIPAFL---CRQTDLLVAAA---KTGKIINIKKGQF-CASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 90 ~~s~~~d~~~~~~l~~-~~d~~--kIgs~~---~~n~~lL~~~a---~~~~PVilstG~~-~tl~e~~~Ave~i~~~Gn~ 159 (290)
.+.+|-|.+++..... .+|++ |=|++- -.-...++++- ...+||=---|-. ..+.++..|+.-....|-+
T Consensus 3 lLvSvr~~eEA~~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvD 82 (238)
T PRK02227 3 LLVSVRNLEEALEALAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGAD 82 (238)
T ss_pred eeeccCCHHHHHHHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCC
Confidence 4667777777776655 57776 223331 23334445432 2336766655632 2567788887777777765
Q ss_pred cEEEEeecCCCCCCCCCCCchhHH----HHHhc--C---CCEEEeCCCC-CCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 022892 160 NVMVCERGTMFGYNDLIVDPRNLE----WMREA--N---CPVVADVTHS-LQQPAGKKLDGGGVASGGLRELIPCIARTA 229 (290)
Q Consensus 160 ~i~L~~~gs~~~y~~~~~dL~~i~----~lk~~--~---~pV~~D~sHs-~~~~~~~~~~~~~~~~~g~~~~~~~~a~aA 229 (290)
. +..|- |+..+..-.+..+. ..+.+ + ++|+| +||. .+.+. - ..+...+
T Consensus 83 y---VKvGl-~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~y-aD~~r~~~~~------------~-----~~l~~~a 140 (238)
T PRK02227 83 Y---VKVGL-YGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGY-ADAHRVGSVS------------P-----LSLPAIA 140 (238)
T ss_pred E---EEEcC-CCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEe-cccccccCCC------------h-----HHHHHHH
Confidence 3 33443 11111111112221 12221 2 35666 7764 11010 1 3455566
Q ss_pred HHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 022892 230 IAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIA 272 (290)
Q Consensus 230 va~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~ 272 (290)
.+.|++|+||.+-.-..+++-|| +++++|+++++..|..-
T Consensus 141 ~~aGf~g~MlDTa~Kdg~~Lfd~---l~~~~L~~Fv~~ar~~G 180 (238)
T PRK02227 141 ADAGFDGAMLDTAIKDGKSLFDH---MDEEELAEFVAEARSHG 180 (238)
T ss_pred HHcCCCEEEEecccCCCcchHhh---CCHHHHHHHHHHHHHcc
Confidence 78999999997765555556675 78999999999999753
No 287
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=86.45 E-value=21 Score=30.95 Aligned_cols=175 Identities=14% Similarity=0.091 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHH---h
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEV---G 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l---~ 104 (290)
|.+...+.++.+.+ +|++.+=+..-+ .-. +++. ..+++.++++++....++..-++-....+++ .
T Consensus 9 ~~~~~~~~~~~~~~----~g~d~i~~~~~D--g~~----~~~~--~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~ 76 (210)
T TIGR01163 9 DFARLGEEVKAVEE----AGADWIHVDVMD--GHF----VPNL--TFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFA 76 (210)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEEcCCC--CCC----CCCc--ccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHH
Confidence 55666677777666 699987765211 000 0111 1345555555554566643322222223333 3
Q ss_pred h-hcceecccCCccCC-HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCc---
Q 022892 105 K-VADIIQIPAFLCRQ-TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDP--- 179 (290)
Q Consensus 105 ~-~~d~~kIgs~~~~n-~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL--- 179 (290)
+ .+|.+++....... ...++.+-+.+..+++-.... +..|...++. .+.+. +++.+.. .+..-...+.
T Consensus 77 ~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~-t~~e~~~~~~----~~~d~-i~~~~~~-~g~tg~~~~~~~~ 149 (210)
T TIGR01163 77 EAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPA-TPLEFLEYVL----PDVDL-VLLMSVN-PGFGGQKFIPDTL 149 (210)
T ss_pred HcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCC-CCHHHHHHHH----hhCCE-EEEEEEc-CCCCcccccHHHH
Confidence 3 48888887654322 245566666777666655555 5555444431 23333 4432211 1111111222
Q ss_pred hhHHHHHh-c-----CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 180 RNLEWMRE-A-----NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 180 ~~i~~lk~-~-----~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
..+..+++ . ++||.++. ++ + +.-...+++.||+|+++=+.++
T Consensus 150 ~~i~~i~~~~~~~~~~~~i~v~G--GI----------------~-----~env~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 150 EKIREVRKMIDENGLSILIEVDG--GV----------------N-----DDNARELAEAGADILVAGSAIF 197 (210)
T ss_pred HHHHHHHHHHHhcCCCceEEEEC--Cc----------------C-----HHHHHHHHHcCCCEEEEChHHh
Confidence 33444443 2 26776632 11 1 3334456789999999887774
No 288
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=86.42 E-value=20 Score=33.30 Aligned_cols=118 Identities=10% Similarity=0.132 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCC------ChhHHHHHHHHHHHhcCCcEEEeecCcccHHH
Q 022892 29 EEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGP------GMVEGLKILEKVKIAYDIPIVTDVHETVQCEE 102 (290)
Q Consensus 29 ~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~------~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~ 102 (290)
.+..++.-++-+.+|.++|+..|-...|+- | |... .+.+|+++..+.+.+..+..+.|++|..-+.-
T Consensus 91 r~~aleiM~KaI~LA~dLGIRtIQLAGYDV------Y-YE~~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiMDtpfm~s 163 (287)
T COG3623 91 RQQALEIMEKAIQLAQDLGIRTIQLAGYDV------Y-YEEADEETRQRFIEGLKWAVELAARAQVMLAVEIMDTPFMNS 163 (287)
T ss_pred HHHHHHHHHHHHHHHHHhCceeEeecccee------e-eccCCHHHHHHHHHHHHHHHHHHHhhccEEEeeecccHHHHH
Confidence 577899999999999999999888877763 1 1111 12489999999999999999999999865554
Q ss_pred HhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 103 VGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 103 l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
+.. .+...-..+.|-+.==.--|+++.|-+.+.-=..-|-++|+-+|=--.
T Consensus 164 Isk----------------~~~~~~~I~sP~f~vYPDiGNlsaw~ndv~~El~lG~~~I~aiHlKDT 214 (287)
T COG3623 164 ISK----------------WLKYDKYINSPWFTVYPDIGNLSAWNNDVQSELQLGIDKIVAIHLKDT 214 (287)
T ss_pred HHH----------------HHHHHHHhCCCcEEecCCcccHhhhhhhHHHHHHcCcCceEEEEeccc
Confidence 432 122233456676666666679999999988666778899988886543
No 289
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=86.36 E-value=2.1 Score=40.21 Aligned_cols=128 Identities=17% Similarity=0.162 Sum_probs=68.8
Q ss_pred hhHHhhhcCCC-CeEEEEccCCccCH------------HHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCC
Q 022892 5 TALFNQLKAAE-PFFLLAGPNVIESE------------EHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPG 71 (290)
Q Consensus 5 ~~~~~~i~~~~-~~~iIAgpcsien~------------~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~ 71 (290)
++-|++|.+.. ..++|||.-. |+. .......+.++..|+++||....--+| ||.-.| . .
T Consensus 76 ~~af~kIkekRpDIl~ia~~~~-EDp~~i~~~aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh~sf---prhms~--~--~ 147 (275)
T PF12683_consen 76 AEAFRKIKEKRPDILLIAGEPH-EDPEVISSAADIVVNPDEISRGYTIVWAAKKMGAKTFVHYSF---PRHMSY--E--L 147 (275)
T ss_dssp HHHHHHHHHH-TTSEEEESS---S-HHHHHHHSSEEEE--HHHHHHHHHHHHHHTT-S-EEEEEE---TTGGGS--H--H
T ss_pred HHHHHHHHhcCCCeEEEcCCCc-CCHHHHhhccCeEeccchhhccHHHHHHHHHcCCceEEEEec---hhhcch--H--H
Confidence 46788888643 4778887542 342 235678899999999999986554444 454332 1 1
Q ss_pred hhHHHHHHHHHHHhcCCcEEEe----ecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCC-eEEEeCCCCCCHHHH
Q 022892 72 MVEGLKILEKVKIAYDIPIVTD----VHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGK-IINIKKGQFCASSVM 146 (290)
Q Consensus 72 ~~~~l~~L~~~~~~~Gi~~~s~----~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~-PVilstG~~~tl~e~ 146 (290)
+..-...+++.|+++||.|.-. |.+...+.-..+. -..+.| +++.+-|+ --++.|.-+++-.-+
T Consensus 148 l~~Rr~~M~~~C~~lGi~fv~~taPDP~sd~gv~gaqqf---------IlE~vp--~~i~kYGkdtaff~TN~a~~epll 216 (275)
T PF12683_consen 148 LARRRDIMEEACKDLGIKFVEVTAPDPTSDVGVAGAQQF---------ILEDVP--KWIKKYGKDTAFFCTNDAMTEPLL 216 (275)
T ss_dssp HHHHHHHHHHHHHHCT--EEEEEE---SSTCHHHHHHHH---------HHHHHH--HHHHHH-S--EEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcHHHHHH---------HHHHHH--HHHHHhCCceeEEecCccccHHHH
Confidence 2355677999999999999874 3333333221110 012222 45666666 456777766444444
Q ss_pred HHHHH
Q 022892 147 VNSAE 151 (290)
Q Consensus 147 ~~Ave 151 (290)
+++++
T Consensus 217 k~~~~ 221 (275)
T PF12683_consen 217 KQALE 221 (275)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 290
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=86.30 E-value=25 Score=31.71 Aligned_cols=129 Identities=16% Similarity=0.113 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEEE-eecCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIVT-DVHETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~s-~~~d~~~~~~l~~ 105 (290)
+.+..++.++.|.+ .|++++=.. |.. ..+++.+++++++++ +.+-+ |+.+.++++...+
T Consensus 25 ~~~~a~~i~~al~~----~Gi~~iEit-l~~--------------~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~ 85 (212)
T PRK05718 25 KLEDAVPLAKALVA----GGLPVLEVT-LRT--------------PAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIE 85 (212)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEEe-cCC--------------ccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHH
Confidence 55778888888887 589887553 321 245555555555554 44444 9999999998877
Q ss_pred -hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCC-CchhHH
Q 022892 106 -VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV-DPRNLE 183 (290)
Q Consensus 106 -~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~-dL~~i~ 183 (290)
..+|+-.+. .|.++++.+-+.+.|++ -|.. |+.|+..|. +.|.+-+-+ ||...+ .+.-+.
T Consensus 86 aGA~FivsP~---~~~~vi~~a~~~~i~~i--PG~~-TptEi~~a~----~~Ga~~vKl--------FPa~~~gg~~~lk 147 (212)
T PRK05718 86 AGAQFIVSPG---LTPPLLKAAQEGPIPLI--PGVS-TPSELMLGM----ELGLRTFKF--------FPAEASGGVKMLK 147 (212)
T ss_pred cCCCEEECCC---CCHHHHHHHHHcCCCEe--CCCC-CHHHHHHHH----HCCCCEEEE--------ccchhccCHHHHH
Confidence 799988886 44588888888887766 4656 999988764 467765555 233222 345566
Q ss_pred HHHh-c-CCCEE
Q 022892 184 WMRE-A-NCPVV 193 (290)
Q Consensus 184 ~lk~-~-~~pV~ 193 (290)
.|+. + ++++.
T Consensus 148 ~l~~p~p~~~~~ 159 (212)
T PRK05718 148 ALAGPFPDVRFC 159 (212)
T ss_pred HHhccCCCCeEE
Confidence 6666 4 45654
No 291
>PRK15447 putative protease; Provisional
Probab=86.24 E-value=11 Score=35.69 Aligned_cols=121 Identities=10% Similarity=0.022 Sum_probs=72.1
Q ss_pred HcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEee----cCcccHHHHhhhcceecccCCccCCH
Q 022892 45 KVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDV----HETVQCEEVGKVADIIQIPAFLCRQT 120 (290)
Q Consensus 45 ~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~----~d~~~~~~l~~~~d~~kIgs~~~~n~ 120 (290)
+.|||+|+...=.-.-|. .| . .+.+++..+.+++.|..+.-+. +.+...+.+.+.++.. ...-.+.|.
T Consensus 26 ~~gaDaVY~g~~~~~~R~---~f---~-~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~-~~~v~v~d~ 97 (301)
T PRK15447 26 DSPVDIVYLGETVCSKRR---EL---K-VGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENG-EFLVEANDL 97 (301)
T ss_pred cCCCCEEEECCccCCCcc---CC---C-HHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcC-CCEEEEeCH
Confidence 359999988621100233 13 2 5789999999999998876533 2244555554433321 112235788
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHH
Q 022892 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMR 186 (290)
Q Consensus 121 ~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk 186 (290)
..+..+.+.+.|++.++.+..+=. .+++.+...|-..++| ..++++.-|..|.
T Consensus 98 g~l~~~~e~~~~l~~d~~lni~N~---~a~~~l~~~G~~rv~l----------s~ELsl~eI~~i~ 150 (301)
T PRK15447 98 GAVRLLAERGLPFVAGPALNCYNA---ATLALLARLGATRWCM----------PVELSRDWLANLL 150 (301)
T ss_pred HHHHHHHhcCCCEEEecccccCCH---HHHHHHHHcCCcEEEE----------CCcCCHHHHHHHH
Confidence 887777777999999999863222 3455566666555444 1235666666664
No 292
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=86.15 E-value=11 Score=35.28 Aligned_cols=108 Identities=15% Similarity=0.164 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCcc------------CCHHH---HHHHHh-cCCeEEEeC-
Q 022892 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLC------------RQTDL---LVAAAK-TGKIINIKK- 137 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~------------~n~~l---L~~~a~-~~~PVilst- 137 (290)
+..|++..++-...++.+.||..++..+++ .+|++-+|+... +=.++ .+++.+ .+.|+++--
T Consensus 4 ~~~~~~~~~~g~~i~m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~Dm 83 (263)
T TIGR00222 4 TLSLLQKKKQEEKIVAITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDL 83 (263)
T ss_pred HHHHHHHHhCCCcEEEEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCC
Confidence 344555545545566889999999999988 699999997743 11122 344544 455655521
Q ss_pred ---CCCCCHHHHHH-HHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEE
Q 022892 138 ---GQFCASSVMVN-SAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV 193 (290)
Q Consensus 138 ---G~~~tl~e~~~-Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~ 193 (290)
+.. ++++... |...+++.|- +.+=+|-|. +. ...+..+.+.++||.
T Consensus 84 Pf~sy~-~~e~a~~na~rl~~eaGa-~aVkiEgg~------~~--~~~i~~l~~~gIpV~ 133 (263)
T TIGR00222 84 PFMSYA-TPEQALKNAARVMQETGA-NAVKLEGGE------WL--VETVQMLTERGVPVV 133 (263)
T ss_pred CcCCCC-CHHHHHHHHHHHHHHhCC-eEEEEcCcH------hH--HHHHHHHHHCCCCEE
Confidence 222 3555433 4444443554 455555442 11 133455555789987
No 293
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=86.07 E-value=4.9 Score=37.91 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=41.6
Q ss_pred cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCC-CCCC---CCCChHHHHH
Q 022892 188 ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAP-VDGP---TQWPLRNLEE 263 (290)
Q Consensus 188 ~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~-~D~~---~sl~p~~l~~ 263 (290)
..+||++|.+.+ |....+....+.....|+.|+.||-...|.|.- ..+. ..++++|+.+
T Consensus 77 ~~~Pv~~D~d~G-----------------g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~ 139 (285)
T TIGR02320 77 TTKPIILDGDTG-----------------GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCG 139 (285)
T ss_pred cCCCEEEecCCC-----------------CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHH
Confidence 478999998876 223333444555678999999999887666532 2332 3456665555
Q ss_pred HHHHHHHH
Q 022892 264 LLEELVAI 271 (290)
Q Consensus 264 lv~~ir~~ 271 (290)
-++..+..
T Consensus 140 kI~Aa~~a 147 (285)
T TIGR02320 140 KIRAGKDA 147 (285)
T ss_pred HHHHHHHh
Confidence 55444433
No 294
>PLN02321 2-isopropylmalate synthase
Probab=86.05 E-value=15 Score=38.60 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=73.8
Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----CCCC---CCCC--chhHHHHHhcCC-CEEEeCCCCCC
Q 022892 132 IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF----GYND---LIVD--PRNLEWMREANC-PVVADVTHSLQ 201 (290)
Q Consensus 132 PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~----~y~~---~~~d--L~~i~~lk~~~~-pV~~D~sHs~~ 201 (290)
|++..-+.. +.++++.|++.+.....+.|++.-..|.. .+.. +.++ ...+...|+.++ .|.|++--.-
T Consensus 158 ~~i~a~~ra-~~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~- 235 (632)
T PLN02321 158 PVICGLSRC-NKKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAG- 235 (632)
T ss_pred eeeeeehhc-cHHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCC-
Confidence 777777777 89999999987665555678887666521 1111 1111 122333344556 4777553220
Q ss_pred CCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 202 QPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
.-.++++..++.++..+||+-+ .++|---.+.|.++.++++.+++
T Consensus 236 --------------rtd~d~l~~~~~~a~~aGa~~I----------~L~DTvG~~~P~~v~~li~~l~~ 280 (632)
T PLN02321 236 --------------RSDPEFLYRILGEVIKAGATTL----------NIPDTVGYTLPSEFGQLIADIKA 280 (632)
T ss_pred --------------CCCHHHHHHHHHHHHHcCCCEE----------EecccccCCCHHHHHHHHHHHHH
Confidence 0125677888889999999722 23888889999999999999875
No 295
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=86.05 E-value=6.2 Score=36.98 Aligned_cols=128 Identities=19% Similarity=0.213 Sum_probs=61.7
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCC----------CCChhHHHHHHHHHHH
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFR----------GPGMVEGLKILEKVKI 84 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~----------g~~~~~~l~~L~~~~~ 84 (290)
+..-||||.|.-+-.-..-++-++|++ .|+-.|- |..+...++ |++.+...+ +-+.|+
T Consensus 80 ~~tPViaGv~atDP~~~~~~fl~~lk~----~Gf~GV~-------NfPTvgliDG~fR~~LEe~Gmgy~~EVe-mi~~A~ 147 (268)
T PF09370_consen 80 KDTPVIAGVCATDPFRDMDRFLDELKE----LGFSGVQ-------NFPTVGLIDGQFRQNLEETGMGYDREVE-MIRKAH 147 (268)
T ss_dssp SSS-EEEEE-TT-TT--HHHHHHHHHH----HT-SEEE-------E-S-GGG--HHHHHHHHHTT--HHHHHH-HHHHHH
T ss_pred cCCCEEEEecCcCCCCcHHHHHHHHHH----hCCceEE-------ECCcceeeccHHHHHHHhcCCCHHHHHH-HHHHHH
Confidence 335699999986544444555666666 4976653 222222221 233222333 556679
Q ss_pred hcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH---cCCCc
Q 022892 85 AYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL---AGNPN 160 (290)
Q Consensus 85 ~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~---~Gn~~ 160 (290)
+.|+..+.=+|+++++..+.+ .+|++-+--+..+ +-.+..+|.. |++|...-++.|.+ .=|++
T Consensus 148 ~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~-----------gG~~Ga~~~~--sl~~a~~~~~~i~~aa~~v~~d 214 (268)
T PF09370_consen 148 EKGLFTTAYVFNEEQARAMAEAGADIIVAHMGLTT-----------GGSIGAKTAL--SLEEAAERIQEIFDAARAVNPD 214 (268)
T ss_dssp HTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS---------------------S----HHHHHHHHHHHHHHHHCC-TT
T ss_pred HCCCeeeeeecCHHHHHHHHHcCCCEEEecCCccC-----------CCCcCccccC--CHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999988 7888865433221 2234555543 57777666665543 22444
Q ss_pred -EEEEeec
Q 022892 161 -VMVCERG 167 (290)
Q Consensus 161 -i~L~~~g 167 (290)
|+|||-|
T Consensus 215 ii~l~hGG 222 (268)
T PF09370_consen 215 IIVLCHGG 222 (268)
T ss_dssp -EEEEECT
T ss_pred eEEEEeCC
Confidence 6666644
No 296
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=86.02 E-value=16 Score=37.03 Aligned_cols=125 Identities=10% Similarity=0.021 Sum_probs=79.3
Q ss_pred HHHHHHHhc-CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----CCC--C-CCCC--chhHHHHHhcCC
Q 022892 121 DLLVAAAKT-GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF----GYN--D-LIVD--PRNLEWMREANC 190 (290)
Q Consensus 121 ~lL~~~a~~-~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~----~y~--~-~~~d--L~~i~~lk~~~~ 190 (290)
+.++.++.. ..|.+..-... ..+++..|++.+...+.+.|+++-.+|.. .+. . +.++ ...+...++.+.
T Consensus 53 e~v~~i~~~~~~~~i~al~r~-~~~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~ 131 (494)
T TIGR00973 53 EAVQRIARTVKNPRVCGLARC-VEKDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTD 131 (494)
T ss_pred HHHHHHHHhCCCCEEEEEcCC-CHHhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 445555433 33455444444 78999999988776677778887766521 111 1 1111 123334445567
Q ss_pred CEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 191 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 191 pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
.|.|++-... .-..+++..++.++..+||+-+ .++|---.+.|.++.++++.+++
T Consensus 132 ~v~f~~Ed~~---------------r~d~~~l~~~~~~~~~~Ga~~i----------~l~DTvG~~~P~~~~~~i~~l~~ 186 (494)
T TIGR00973 132 DVEFSCEDAG---------------RTEIPFLARIVEAAINAGATTI----------NIPDTVGYALPAEYGNLIKGLRE 186 (494)
T ss_pred eEEEEcCCCC---------------CCCHHHHHHHHHHHHHcCCCEE----------EeCCCCCCCCHHHHHHHHHHHHH
Confidence 7888554331 1135677888888899999732 23899999999999999999876
Q ss_pred H
Q 022892 271 I 271 (290)
Q Consensus 271 ~ 271 (290)
-
T Consensus 187 ~ 187 (494)
T TIGR00973 187 N 187 (494)
T ss_pred h
Confidence 3
No 297
>PRK15063 isocitrate lyase; Provisional
Probab=85.99 E-value=19 Score=36.08 Aligned_cols=167 Identities=16% Similarity=0.108 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
..+-+.|++..++-+...+--++|+-++..+.+ ..+.+.+++..+.... -.+..+.| --|.- +.+++.+.|+
T Consensus 49 ~~~a~kLr~lL~~~~~~~~~Ga~d~~~A~q~~~aGf~AIy~SG~~vAa~~---~~s~~g~P---D~~l~-p~~~v~~~v~ 121 (428)
T PRK15063 49 RRGAEKLWELLHGEPYVNALGALTGNQAVQQVKAGLKAIYLSGWQVAADA---NLAGQMYP---DQSLY-PANSVPAVVK 121 (428)
T ss_pred HHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHhCCCEEEECHHHHhcCc---ccccCCCC---CcccC-CHHHHHHHHH
Confidence 456667888888888777789999999998887 6999999988775411 11345666 23444 8899999988
Q ss_pred HHHHcCC--CcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 022892 152 KVRLAGN--PNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 229 (290)
Q Consensus 152 ~i~~~Gn--~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aA 229 (290)
.|...=. +++.... + .-++ + .+-+||+.|.+-+- +| ..-+..+.+.-
T Consensus 122 ~I~~a~~~~d~~~~~~-~-~~~~----~---------d~~~PIiADaDtGf---------------Gg-~~nv~~~vk~~ 170 (428)
T PRK15063 122 RINNALRRADQIQWSE-G-DKGY----I---------DYFAPIVADAEAGF---------------GG-VLNAFELMKAM 170 (428)
T ss_pred HHHHHHHHhhhHhhhh-c-cccc----c---------cCCCCeEEECCCCC---------------CC-cHHHHHHHHHH
Confidence 7743210 1111100 0 0000 0 12379999998763 23 22244556677
Q ss_pred HHcCCCEEEEeeeCCCCCCC--CCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 230 IAVGVDGVFMEVHDDPLNAP--VDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 230 va~GA~G~~IEkH~t~dka~--~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
+.+||.|+-||-...+.|.- -+++.-.+.+++-+=++.+|.....+|.
T Consensus 171 ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~ 220 (428)
T PRK15063 171 IEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGV 220 (428)
T ss_pred HHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCC
Confidence 88999999999775432221 2555556666666666666666665665
No 298
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=85.99 E-value=44 Score=34.23 Aligned_cols=100 Identities=11% Similarity=0.079 Sum_probs=66.2
Q ss_pred HHHHHHhcCCeEEEeCC-----CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEe
Q 022892 122 LLVAAAKTGKIINIKKG-----QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVAD 195 (290)
Q Consensus 122 lL~~~a~~~~PVilstG-----~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D 195 (290)
.++.+-+.+..|-++.- ...+++-+.+.++.+...|-..+.|+..... -+|.. + ..-+..+++ +++||.+
T Consensus 131 ~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~-~~P~~-v-~~li~~l~~~~~v~i~~- 206 (524)
T PRK12344 131 SVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNGG-TLPHE-V-AEIVAEVRAAPGVPLGI- 206 (524)
T ss_pred HHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCC-cCHHH-H-HHHHHHHHHhcCCeEEE-
Confidence 44555667888877543 2236777888888888889888888776552 12321 1 245666777 7899998
Q ss_pred CCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCC
Q 022892 196 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 245 (290)
Q Consensus 196 ~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~ 245 (290)
+.|-. +.+...-+.+|+.+||+ .||.-+..
T Consensus 207 H~HND------------------~GlA~ANslaAi~aGa~--~Vd~Tl~G 236 (524)
T PRK12344 207 HAHND------------------SGCAVANSLAAVEAGAR--QVQGTING 236 (524)
T ss_pred EECCC------------------CChHHHHHHHHHHhCCC--EEEEeccc
Confidence 77753 22334557788999998 88877654
No 299
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=85.96 E-value=4.7 Score=38.44 Aligned_cols=88 Identities=17% Similarity=0.251 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-
Q 022892 29 EEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK- 105 (290)
Q Consensus 29 ~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~- 105 (290)
.....+.|+.+.+ +|++++... +||....|.|. ..|..++++++..++|++. .+++++++..+.+
T Consensus 148 ~~~~~~~a~~le~----~G~d~i~vh-----~rt~~~~~~G~---a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~ 215 (321)
T PRK10415 148 HRNCVEIAQLAED----CGIQALTIH-----GRTRACLFNGE---AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDY 215 (321)
T ss_pred cchHHHHHHHHHH----hCCCEEEEe-----cCccccccCCC---cChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhc
Confidence 3345677777655 699887543 57655555542 2467888888889999998 8999988888765
Q ss_pred -hcceecccCCccCCHHHHHHHHh
Q 022892 106 -VADIIQIPAFLCRQTDLLVAAAK 128 (290)
Q Consensus 106 -~~d~~kIgs~~~~n~~lL~~~a~ 128 (290)
.+|.+.||-..+.|..+.+++..
T Consensus 216 ~gadgVmiGR~~l~nP~if~~~~~ 239 (321)
T PRK10415 216 TGADALMIGRAAQGRPWIFREIQH 239 (321)
T ss_pred cCCCEEEEChHhhcCChHHHHHHH
Confidence 69999999999999888887754
No 300
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=85.95 E-value=17 Score=33.00 Aligned_cols=47 Identities=9% Similarity=-0.049 Sum_probs=28.1
Q ss_pred HHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 022892 122 LLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 122 lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
+.+.+.+.|..+.+.+-....+.....+...+...+.+++-+|.-..
T Consensus 138 l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~l~~~v~~~~~~~~~D~~ 184 (284)
T PRK13210 138 AVEQAAAAQVMLAVEIMDTPFMNSISKWKKWDKEIDSPWLTVYPDVG 184 (284)
T ss_pred HHHHHHHhCCEEEEEecCccccCCHHHHHHHHHHcCCCceeEEecCC
Confidence 44556677889999885332233333344455555677788876654
No 301
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=85.76 E-value=30 Score=32.10 Aligned_cols=142 Identities=21% Similarity=0.269 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d 108 (290)
-.++|++.-+ .|+|=+.|=-.++ ...-+ +--+.++.+.+++.-||+.. -+-+.++++.+-. .+|
T Consensus 32 pVelA~~Y~e----~GADElvFlDItA-----s~~gr----~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGAD 98 (256)
T COG0107 32 PVELAKRYNE----EGADELVFLDITA-----SSEGR----ETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGAD 98 (256)
T ss_pred hHHHHHHHHH----cCCCeEEEEeccc-----ccccc----hhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCC
Confidence 4677777766 4998655432332 10011 34588899999999999877 5677777776655 799
Q ss_pred eecccCCccCCHHHHHHHHhc-CC--------------------eEEEeCCCC---CCHHHHHHHHHHHHHcCCCcEEEE
Q 022892 109 IIQIPAFLCRQTDLLVAAAKT-GK--------------------IINIKKGQF---CASSVMVNSAEKVRLAGNPNVMVC 164 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~~-~~--------------------PVilstG~~---~tl~e~~~Ave~i~~~Gn~~i~L~ 164 (290)
-+.|.|.-+.|.+|++++|.. |. -|...+|-- .+.-||...+ .+.|.-.|.|-
T Consensus 99 KVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~---e~~GAGEIlLt 175 (256)
T COG0107 99 KVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEV---EELGAGEILLT 175 (256)
T ss_pred eeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHH---HHcCCceEEEe
Confidence 999999999999999998852 21 233333322 2344555444 45576666553
Q ss_pred e---ecCCCCCCCCCCCchhHHHHHh-cCCCEEE
Q 022892 165 E---RGTMFGYNDLIVDPRNLEWMRE-ANCPVVA 194 (290)
Q Consensus 165 ~---~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~ 194 (290)
- -|+.-+| |+.-+..+++ -++||+.
T Consensus 176 smD~DGtk~Gy-----Dl~l~~~v~~~v~iPvIA 204 (256)
T COG0107 176 SMDRDGTKAGY-----DLELTRAVREAVNIPVIA 204 (256)
T ss_pred eecccccccCc-----CHHHHHHHHHhCCCCEEe
Confidence 2 1233355 5666666777 7899986
No 302
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=85.74 E-value=32 Score=32.38 Aligned_cols=178 Identities=12% Similarity=0.148 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh----hc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK----VA 107 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~----~~ 107 (290)
.+++++.+++.|++.+.+++.-- .. .+.. |. +++.-...++.++++..+||+----+-.+.+.+.. .+
T Consensus 27 n~e~~~avi~aAe~~~~Pvii~~-~~---~~~~--~~--~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~ 98 (281)
T PRK06806 27 NMEMVMGAIKAAEELNSPIILQI-AE---VRLN--HS--PLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGF 98 (281)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEc-Cc---chhc--cC--ChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999876532 22 2211 22 22333456778899999999876655555555544 58
Q ss_pred ceecccCCccC---CHHHH----HHHHhcCCeEEEeCCCC--------------CCHHHHHHHHHHHHHcCCCcEEEEee
Q 022892 108 DIIQIPAFLCR---QTDLL----VAAAKTGKIINIKKGQF--------------CASSVMVNSAEKVRLAGNPNVMVCER 166 (290)
Q Consensus 108 d~~kIgs~~~~---n~~lL----~~~a~~~~PVilstG~~--------------~tl~e~~~Ave~i~~~Gn~~i~L~~~ 166 (290)
+++++-..... |..+- +.+-..|.||-..-|-- -+++|...+ +...|-+.+.+ --
T Consensus 99 tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f---~~~tg~DyLAv-ai 174 (281)
T PRK06806 99 TSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRF---AEETDVDALAV-AI 174 (281)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHH---HHhhCCCEEEE-cc
Confidence 89999888773 33322 22334566664332211 145555444 44567665555 22
Q ss_pred cCCCC-CCC-CCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 167 GTMFG-YND-LIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 167 gs~~~-y~~-~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
|+.|+ |+. ..+++..+..+++ .++|++. |+- | |.. ..-...++..|++|+=+=+-
T Consensus 175 G~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~---hG~-----------S----GI~---~e~~~~~i~~G~~kinv~T~ 232 (281)
T PRK06806 175 GNAHGMYNGDPNLRFDRLQEINDVVHIPLVL---HGG-----------S----GIS---PEDFKKCIQHGIRKINVATA 232 (281)
T ss_pred CCCCCCCCCCCccCHHHHHHHHHhcCCCEEE---ECC-----------C----CCC---HHHHHHHHHcCCcEEEEhHH
Confidence 33222 322 4588888888887 7899876 541 1 211 33345578889987765443
No 303
>PLN02808 alpha-galactosidase
Probab=85.61 E-value=3 Score=41.11 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHH-HHHcCCCEEeccccccC-CCCCcccCC--CCChhHHHHHHHHHHHhcCCcEEE-------ee--
Q 022892 28 SEEHIMRMAKHIKSI-STKVGLPLVFKSSFDKA-NRTSSKSFR--GPGMVEGLKILEKVKIAYDIPIVT-------DV-- 94 (290)
Q Consensus 28 n~~~~le~Ak~L~~~-a~~~G~~~V~~~~~~k~-~rts~~~~~--g~~~~~~l~~L~~~~~~~Gi~~~s-------~~-- 94 (290)
|++.+++.|.+|++. .+++|...|-....+-. .|.+.+.+. .-.+..|++.|.++.++.|+.|-- +.
T Consensus 47 ~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~GlkfGiy~~~G~~tC~~ 126 (386)
T PLN02808 47 NETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKLGIYSDAGTLTCSK 126 (386)
T ss_pred CHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCceEEEecCCccccCC
Confidence 788899999997653 23468777666655532 354333221 011247899999999999998843 11
Q ss_pred cCcc-------cHHHHhh-hcceecccCCccC-------CHHHHHHHHhcCCeEEEeC---CCCCCHHHHH
Q 022892 95 HETV-------QCEEVGK-VADIIQIPAFLCR-------QTDLLVAAAKTGKIINIKK---GQFCASSVMV 147 (290)
Q Consensus 95 ~d~~-------~~~~l~~-~~d~~kIgs~~~~-------n~~lL~~~a~~~~PVilst---G~~~tl~e~~ 147 (290)
..|- +++.+++ .+|++|+-..... -..+-+++.++|+||++|- |.. ++.+|.
T Consensus 127 ~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpi~~slc~wg~~-~p~~w~ 196 (386)
T PLN02808 127 TMPGSLGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNSGRPIFFSLCEWGQE-DPATWA 196 (386)
T ss_pred CCCcchHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHhCCCeEEEecCCCCC-CHHHHH
Confidence 1233 3445566 6999998754321 1135567788999999884 434 555553
No 304
>PRK06801 hypothetical protein; Provisional
Probab=85.50 E-value=32 Score=32.52 Aligned_cols=84 Identities=19% Similarity=0.201 Sum_probs=54.7
Q ss_pred cceecccCCccCCHHHHHH----HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhH
Q 022892 107 ADIIQIPAFLCRQTDLLVA----AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 182 (290)
Q Consensus 107 ~d~~kIgs~~~~n~~lL~~----~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i 182 (290)
-.=|.||++++.|.+.++. +-.++.||||..+.. ... |.....=...+
T Consensus 15 ~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~-~~~---------------------------~~~~~~~~~~~ 66 (286)
T PRK06801 15 KHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEV-HFK---------------------------YISLESLVEAV 66 (286)
T ss_pred HCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcc-hhh---------------------------cCCHHHHHHHH
Confidence 4567889999998876654 345788888887665 210 11000001223
Q ss_pred HHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 183 EWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 183 ~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
..+.+ ..+||.+--||+. . ......|+..|++.+|+
T Consensus 67 ~~~a~~~~vpV~lHlDH~~----------------~-----~e~i~~Ai~~GftSVm~ 103 (286)
T PRK06801 67 KFEAARHDIPVVLNLDHGL----------------H-----FEAVVRALRLGFSSVMF 103 (286)
T ss_pred HHHHHHCCCCEEEECCCCC----------------C-----HHHHHHHHHhCCcEEEE
Confidence 33444 7899999888973 2 56677889999999888
No 305
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=85.46 E-value=4.8 Score=40.18 Aligned_cols=116 Identities=21% Similarity=0.158 Sum_probs=67.5
Q ss_pred cccHHHHhh-hcceecccCC---ccCCHHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE-eecCC
Q 022892 97 TVQCEEVGK-VADIIQIPAF---LCRQTDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC-ERGTM 169 (290)
Q Consensus 97 ~~~~~~l~~-~~d~~kIgs~---~~~n~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~-~~gs~ 169 (290)
.+.++.+.+ .+|++-|-+. .....+.++++.+. +.||+..+. .|.++...+++ .|-+-|-+. +.|+.
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v--~t~~~a~~l~~----aGad~i~vg~g~G~~ 299 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNV--ATAEQAKALID----AGADGLRVGIGPGSI 299 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeC--CCHHHHHHHHH----hCCCEEEECCCCCcC
Confidence 345555555 5888887663 22344566776554 689999666 45888888765 466544332 33321
Q ss_pred --------CCCCCCCCCchhHHHH----HhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 170 --------FGYNDLIVDPRNLEWM----REANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 170 --------~~y~~~~~dL~~i~~l----k~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
.++| .+.++... +++++||+.|.-=- + + ..++ .|.++||+.+
T Consensus 300 ~~t~~~~~~g~p----~~~~i~~~~~~~~~~~vpviadGGi~---------------~-~-----~di~-kAla~GA~~V 353 (450)
T TIGR01302 300 CTTRIVAGVGVP----QITAVYDVAEYAAQSGIPVIADGGIR---------------Y-S-----GDIV-KALAAGADAV 353 (450)
T ss_pred CccceecCCCcc----HHHHHHHHHHHHhhcCCeEEEeCCCC---------------C-H-----HHHH-HHHHcCCCEE
Confidence 1222 23344333 23689998752211 1 1 2334 5799999999
Q ss_pred EEeeeCC
Q 022892 238 FMEVHDD 244 (290)
Q Consensus 238 ~IEkH~t 244 (290)
|+=.-|+
T Consensus 354 ~~G~~~a 360 (450)
T TIGR01302 354 MLGSLLA 360 (450)
T ss_pred EECchhh
Confidence 9987665
No 306
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=85.28 E-value=25 Score=34.07 Aligned_cols=149 Identities=10% Similarity=0.084 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccC--CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCR--QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~--n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
+.-..+.+...+.|++.+-- |+.-.. ..+.++.+.+.+.+.-+..-..+..++++.|++
T Consensus 22 ~~k~~ia~~L~~~Gv~~IEv-------------------G~p~~~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~ 82 (363)
T TIGR02090 22 EQKVEIARKLDELGVDVIEA-------------------GFPIASEGEFEAIKKISQEGLNAEICSLARALKKDIDKAID 82 (363)
T ss_pred HHHHHHHHHHHHcCCCEEEE-------------------eCCCCChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHH
Confidence 44455666667778766532 222221 124456666554433333322347888777754
Q ss_pred HHHHcCCCcEEEEeecCCC----CCCC---CCCC--chhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccH
Q 022892 152 KVRLAGNPNVMVCERGTMF----GYND---LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELI 222 (290)
Q Consensus 152 ~i~~~Gn~~i~L~~~gs~~----~y~~---~~~d--L~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~ 222 (290)
.|-+.+.++-..|.. .+.. +.++ ...+...|+.|+.|.+....+. .-..+++
T Consensus 83 ----~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~---------------r~~~~~l 143 (363)
T TIGR02090 83 ----CGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDAT---------------RTDIDFL 143 (363)
T ss_pred ----cCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecC---------------CCCHHHH
Confidence 466677777666521 1111 1111 1233344456777766433321 0124667
Q ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 223 PCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 223 ~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
..++.++..+|++.+. ++|-.-.++|+++.++++.+++
T Consensus 144 ~~~~~~~~~~g~~~i~----------l~DT~G~~~P~~v~~li~~l~~ 181 (363)
T TIGR02090 144 IKVFKRAEEAGADRIN----------IADTVGVLTPQKMEELIKKLKE 181 (363)
T ss_pred HHHHHHHHhCCCCEEE----------EeCCCCccCHHHHHHHHHHHhc
Confidence 7778888999998432 2688889999999999999885
No 307
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=85.19 E-value=8.2 Score=36.05 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=43.5
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s 92 (290)
++++-||+|.+. |....+++|++..+ +|++++... .|+ |....-++-+.+.+++++..++|++-
T Consensus 67 ~~~~pvi~gv~~--~t~~~i~~a~~a~~----~Gad~v~~~--------pP~-y~~~~~~~i~~~f~~v~~~~~~pi~l 130 (289)
T cd00951 67 AGRVPVLAGAGY--GTATAIAYAQAAEK----AGADGILLL--------PPY-LTEAPQEGLYAHVEAVCKSTDLGVIV 130 (289)
T ss_pred CCCCCEEEecCC--CHHHHHHHHHHHHH----hCCCEEEEC--------CCC-CCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 456789999885 77777777766655 699998763 122 22233234466788888888999875
No 308
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=85.05 E-value=17 Score=35.54 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 022892 121 DLLVAAAKTGKIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 121 ~lL~~~a~~~~PVilstG~~~tl~e~~~A 149 (290)
.+-+++++.|.|.++||..+.++||+..+
T Consensus 91 a~AraA~~~gi~~~lSt~ss~slEeva~~ 119 (367)
T PLN02493 91 ATARAASAAGTIMTLSSWATSSVEEVAST 119 (367)
T ss_pred HHHHHHHHcCCCeeecCcccCCHHHHHhc
Confidence 56688899999999999999999999876
No 309
>PRK09875 putative hydrolase; Provisional
Probab=84.99 E-value=7.4 Score=36.79 Aligned_cols=104 Identities=9% Similarity=0.067 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHH-hcCCeEEEeCCCCC----------
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAA-KTGKIINIKKGQFC---------- 141 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a-~~~~PVilstG~~~---------- 141 (290)
+...++|++++ +.|...+.++-.. +.=+|..+|+++| ++|..|+.+||---
T Consensus 34 ~~~~~el~~~~-~~Gg~tiVd~T~~-----------------g~GRd~~~l~~is~~tgv~Iv~~TG~y~~~~~p~~~~~ 95 (292)
T PRK09875 34 AFICQEMNDLM-TRGVRNVIEMTNR-----------------YMGRNAQFMLDVMRETGINVVACTGYYQDAFFPEHVAT 95 (292)
T ss_pred HHHHHHHHHHH-HhCCCeEEecCCC-----------------ccCcCHHHHHHHHHHhCCcEEEcCcCCCCccCCHHHhc
Confidence 45566777764 5587777665422 2228889999987 58999999999642
Q ss_pred -CHHHHHHHHH-----HHHHcCCCcEEEEeecCCCC-C-CCCCCCchhHHHHHh-cCCCEEE
Q 022892 142 -ASSVMVNSAE-----KVRLAGNPNVMVCERGTMFG-Y-NDLIVDPRNLEWMRE-ANCPVVA 194 (290)
Q Consensus 142 -tl~e~~~Ave-----~i~~~Gn~~i~L~~~gs~~~-y-~~~~~dL~~i~~lk~-~~~pV~~ 194 (290)
+.+++.+-+- -+...|-.--+|-++|++++ . +.+.-=+++...... +|+||.+
T Consensus 96 ~~~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~ 157 (292)
T PRK09875 96 RSVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPIST 157 (292)
T ss_pred CCHHHHHHHHHHHHHHhhccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEE
Confidence 3333322211 12112222233449999764 2 222111333333333 8999965
No 310
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=84.92 E-value=23 Score=33.12 Aligned_cols=64 Identities=9% Similarity=0.139 Sum_probs=39.4
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIV 91 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~ 91 (290)
++++-||+|.+.. +.+.++++|+. ++++|+|+|... .|+ |....-++-+.+.++++++. ++|++
T Consensus 68 ~~~~pvi~gv~~~-~t~~~i~la~~----a~~~Gad~v~v~--------~P~-y~~~~~~~i~~yf~~v~~~~~~lpv~ 132 (290)
T TIGR00683 68 KDQIALIAQVGSV-NLKEAVELGKY----ATELGYDCLSAV--------TPF-YYKFSFPEIKHYYDTIIAETGGLNMI 132 (290)
T ss_pred CCCCcEEEecCCC-CHHHHHHHHHH----HHHhCCCEEEEe--------CCc-CCCCCHHHHHHHHHHHHhhCCCCCEE
Confidence 4567899998753 55555665555 445799987763 122 22222134566677887776 68876
No 311
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=84.91 E-value=16 Score=35.80 Aligned_cols=101 Identities=17% Similarity=0.257 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHH-H---------------------HHHHcCCCcEEEEeecC---------
Q 022892 120 TDLLVAAAKTGKIINIKKGQFCASSVMVNSA-E---------------------KVRLAGNPNVMVCERGT--------- 168 (290)
Q Consensus 120 ~~lL~~~a~~~~PVilstG~~~tl~e~~~Av-e---------------------~i~~~Gn~~i~L~~~gs--------- 168 (290)
..+-+++++.|.|..+||..+.++||+..+. . .....|-.-|+|.--..
T Consensus 100 ~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~ 179 (367)
T TIGR02708 100 VATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDV 179 (367)
T ss_pred HHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhh
Confidence 4567888999999999999999999998763 1 12344543344422100
Q ss_pred --CC--C-----------------C------CCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcc
Q 022892 169 --MF--G-----------------Y------NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRE 220 (290)
Q Consensus 169 --~~--~-----------------y------~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~ 220 (290)
.| + + ....++...|.++++ .++||++= ++ +.
T Consensus 180 r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~~~~~PvivK---Gv----------------~~-- 238 (367)
T TIGR02708 180 RNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAGYSGLPVYVK---GP----------------QC-- 238 (367)
T ss_pred hcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHHHhcCCCEEEe---CC----------------CC--
Confidence 00 0 0 011344567788888 78999882 12 11
Q ss_pred cHHHHHHHHHHcCCCEEEEeeeC
Q 022892 221 LIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 221 ~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
...+..++..|++|+++--|-
T Consensus 239 --~eda~~a~~~Gvd~I~VS~HG 259 (367)
T TIGR02708 239 --PEDADRALKAGASGIWVTNHG 259 (367)
T ss_pred --HHHHHHHHHcCcCEEEECCcC
Confidence 567888899999999999997
No 312
>PRK07094 biotin synthase; Provisional
Probab=84.91 E-value=34 Score=32.07 Aligned_cols=205 Identities=13% Similarity=0.026 Sum_probs=101.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh-cCCcEEEee--cCcccHHHHh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA-YDIPIVTDV--HETVQCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~Gi~~~s~~--~d~~~~~~l~ 104 (290)
+.+..++.++.+. +.|+..|.++.-+. + .+ . .+.+..+.+..++ .|+.+..++ .+++.++.+.
T Consensus 71 s~eei~~~~~~~~----~~g~~~i~l~gG~~-~-----~~---~-~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk 136 (323)
T PRK07094 71 SPEEILECAKKAY----ELGYRTIVLQSGED-P-----YY---T-DEKIADIIKEIKKELDVAITLSLGERSYEEYKAWK 136 (323)
T ss_pred CHHHHHHHHHHHH----HCCCCEEEEecCCC-C-----CC---C-HHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHH
Confidence 3445555555444 46888777764321 1 01 1 2445554444444 677665444 5567777777
Q ss_pred h-hcceecccCCcc------------CCH---HHHHHHHhcCCeEE--EeCCC-CCCHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 105 K-VADIIQIPAFLC------------RQT---DLLVAAAKTGKIIN--IKKGQ-FCASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 105 ~-~~d~~kIgs~~~------------~n~---~lL~~~a~~~~PVi--lstG~-~~tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
+ .++.+.+|-... +.. ..++.+-+.|.+|. +=.|. .-|.+++.+.++.+++-+-+.+.+.-
T Consensus 137 ~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~ 216 (323)
T PRK07094 137 EAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGP 216 (323)
T ss_pred HcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeec
Confidence 7 577776654322 111 22334444565432 22343 34788888888888776544333322
Q ss_pred e----cCCC-CCCCC--CCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCE
Q 022892 166 R----GTMF-GYNDL--IVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDG 236 (290)
Q Consensus 166 ~----gs~~-~y~~~--~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G 236 (290)
- ||-+ ..+.. .-.++.+..+|. + +..+-. ++ ++ ..-+ +.....+...||++
T Consensus 217 ~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~-~~-~~-------------~~~~-----~~~~~~~l~~Gan~ 276 (323)
T PRK07094 217 FIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPA-TT-AL-------------GTLN-----PDGREKGLKAGANV 276 (323)
T ss_pred cccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcc-cC-Cc-------------cccC-----chhHHHHHHcCCce
Confidence 2 2210 11110 111344444443 2 111110 00 10 0011 33345678899999
Q ss_pred EEEeeeCCCCCCC---CCCCCCCChHHHHHHHH
Q 022892 237 VFMEVHDDPLNAP---VDGPTQWPLRNLEELLE 266 (290)
Q Consensus 237 ~~IEkH~t~dka~---~D~~~sl~p~~l~~lv~ 266 (290)
+|.+.++.-.|.. =|++.+.+.+.......
T Consensus 277 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 309 (323)
T PRK07094 277 VMPNLTPGEYRKLYSLYPGKICTGEEAAECREC 309 (323)
T ss_pred ecCCCCchhhCcccccCCCCCCCCccHHHHHHH
Confidence 9987766555543 28888876665544433
No 313
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=84.86 E-value=36 Score=32.25 Aligned_cols=139 Identities=9% Similarity=0.046 Sum_probs=74.8
Q ss_pred hhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCC-Ccc--------------cCCCCChhH
Q 022892 10 QLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRT-SSK--------------SFRGPGMVE 74 (290)
Q Consensus 10 ~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rt-s~~--------------~~~g~~~~~ 74 (290)
.+...+|+.+=||+.+- |- +..+++.+ +|+-+|.-.+...+||. .+. .|...|++.
T Consensus 8 Gl~l~NPv~~AsG~~~~-~~----e~~~~~~~----~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~ 78 (310)
T PRK02506 8 GFKFDNCLMNAAGVYCM-TK----EELEEVEA----SAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDY 78 (310)
T ss_pred CEECCCCCEeCCCCCCC-CH----HHHHHHHH----cCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHH
Confidence 56678888877788841 22 22333433 57665544444433543 111 133344456
Q ss_pred HHHHHHHHHHh-cCCcEEEeecC--cccHHHHh----h--hcceecc--c------CCccC-CH----HHHHHHH-hcCC
Q 022892 75 GLKILEKVKIA-YDIPIVTDVHE--TVQCEEVG----K--VADIIQI--P------AFLCR-QT----DLLVAAA-KTGK 131 (290)
Q Consensus 75 ~l~~L~~~~~~-~Gi~~~s~~~d--~~~~~~l~----~--~~d~~kI--g------s~~~~-n~----~lL~~~a-~~~~ 131 (290)
.++.+++..+. .+.|++.++.- ++....+. + .+|++-+ . .+.+. +. ++++++- .+.+
T Consensus 79 ~~~~i~~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~ 158 (310)
T PRK02506 79 YLDYVLELQKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTK 158 (310)
T ss_pred HHHHHHHHHhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCC
Confidence 66667665544 36888877643 22222222 1 1455433 1 11121 22 3445543 3578
Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 132 IINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 132 PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
||++|-....+..++..+++.....|
T Consensus 159 Pv~vKlsp~~~~~~~a~~~~~~~~~g 184 (310)
T PRK02506 159 PLGVKLPPYFDIVHFDQAAAIFNKFP 184 (310)
T ss_pred ccEEecCCCCCHHHHHHHHHHhCcCc
Confidence 99999999878888888876554433
No 314
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=84.82 E-value=6 Score=39.24 Aligned_cols=121 Identities=17% Similarity=0.039 Sum_probs=67.8
Q ss_pred cccHHHHhh-hcceecccCCccCC---HHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEe-----
Q 022892 97 TVQCEEVGK-VADIIQIPAFLCRQ---TDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCE----- 165 (290)
Q Consensus 97 ~~~~~~l~~-~~d~~kIgs~~~~n---~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~----- 165 (290)
.+.++.+.+ .+|++.|-+..=.+ .++++++-+. +.+|++.+-. |.++.+.+++ .|-+-|.+--
T Consensus 155 ~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~--T~e~a~~l~~----aGaD~I~vG~g~Gs~ 228 (404)
T PRK06843 155 IERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIV--TKEAALDLIS----VGADCLKVGIGPGSI 228 (404)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecC--CHHHHHHHHH----cCCCEEEECCCCCcC
Confidence 366777766 79999965544322 2456666543 3566666553 6888888765 4654444211
Q ss_pred ecCCCCCCCCCCCchhHHHHHh----cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 166 RGTMFGYNDLIVDPRNLEWMRE----ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 166 ~gs~~~y~~~~~dL~~i~~lk~----~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
|++......-.-++.++..+++ +++||+.|.-=.. +.-...|.++||+++|+=.
T Consensus 229 c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~----------------------~~Di~KALalGA~aVmvGs 286 (404)
T PRK06843 229 CTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRF----------------------SGDVVKAIAAGADSVMIGN 286 (404)
T ss_pred CcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCC----------------------HHHHHHHHHcCCCEEEEcc
Confidence 2221000000113445544333 5799988633211 2234467999999999988
Q ss_pred eCCC
Q 022892 242 HDDP 245 (290)
Q Consensus 242 H~t~ 245 (290)
-|+-
T Consensus 287 ~~ag 290 (404)
T PRK06843 287 LFAG 290 (404)
T ss_pred eeee
Confidence 7765
No 315
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=84.76 E-value=15 Score=34.10 Aligned_cols=102 Identities=18% Similarity=0.134 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeecCCC----CCC--C-CCCC--chhHHHHHhcCCCEEEeCCCCCCCCCCCccCCC
Q 022892 141 CASSVMVNSAEKVRLAGNPNVMVCERGTMF----GYN--D-LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGG 211 (290)
Q Consensus 141 ~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~----~y~--~-~~~d--L~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~ 211 (290)
++.++++.|++ .|-+.|.++-..|.. +.. . +.++ ...+...|+.|+.|.+....+.
T Consensus 72 ~~~~di~~a~~----~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~----------- 136 (262)
T cd07948 72 CHMDDARIAVE----TGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSF----------- 136 (262)
T ss_pred CCHHHHHHHHH----cCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeC-----------
Confidence 38888888865 477778888877621 111 1 1111 1222333445788777544442
Q ss_pred CccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 212 GVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 212 ~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
.-..+.+..++..+..+|++.+ . ++|..-.+.|++..++++.+++.
T Consensus 137 ----r~~~~~l~~~~~~~~~~g~~~i----~------l~Dt~G~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 137 ----RSDLVDLLRVYRAVDKLGVNRV----G------IADTVGIATPRQVYELVRTLRGV 182 (262)
T ss_pred ----CCCHHHHHHHHHHHHHcCCCEE----E------ECCcCCCCCHHHHHHHHHHHHHh
Confidence 0123556677778888899832 2 27888899999999999999864
No 316
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=84.75 E-value=2.7 Score=41.21 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=49.7
Q ss_pred HHHHHH-HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cC-CCEEEeC
Q 022892 120 TDLLVA-AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN-CPVVADV 196 (290)
Q Consensus 120 ~~lL~~-~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~-~pV~~D~ 196 (290)
..+++. ..+.|.-+.+-... ++++++++++ .|.+++.+|.-+++ .-...|+..+..+.+ .| ++|++|.
T Consensus 108 ~~~~~~~l~~~gv~v~~~d~~--d~~~l~~~l~-----~~t~~v~~EspsNP--~l~v~Dl~~i~~~a~~~g~~~~vVDn 178 (386)
T PF01053_consen 108 YRLLEELLPRFGVEVTFVDPT--DLEALEAALR-----PNTKLVFLESPSNP--TLEVPDLEAIAKLAKEHGDILVVVDN 178 (386)
T ss_dssp HHHHHHCHHHTTSEEEEESTT--SHHHHHHHHC-----TTEEEEEEESSBTT--TTB---HHHHHHHHHHTTT-EEEEEC
T ss_pred hhhhhhhhcccCcEEEEeCch--hHHHHHhhcc-----ccceEEEEEcCCCc--ccccccHHHHHHHHHHhCCceEEeec
Confidence 355654 66778887766552 6888888764 37789999988762 335689999998876 87 9999998
Q ss_pred CCC
Q 022892 197 THS 199 (290)
Q Consensus 197 sHs 199 (290)
+-+
T Consensus 179 T~a 181 (386)
T PF01053_consen 179 TFA 181 (386)
T ss_dssp TTT
T ss_pred ccc
Confidence 876
No 317
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=84.70 E-value=8.7 Score=38.80 Aligned_cols=124 Identities=14% Similarity=0.149 Sum_probs=79.8
Q ss_pred HHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC---CcEEEeecCcccHHHHhh---hcceecccCCc
Q 022892 43 STKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD---IPIVTDVHETVQCEEVGK---VADIIQIPAFL 116 (290)
Q Consensus 43 a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G---i~~~s~~~d~~~~~~l~~---~~d~~kIgs~~ 116 (290)
+.+.|+|.|....-+ -.+.+.+++++..+.| +.++.-+-++..++-+.+ ..|.+.+|..|
T Consensus 180 ~~~~~~d~I~lskV~--------------sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dgi~iG~gD 245 (473)
T TIGR01064 180 GVEQGVDMVAASFVR--------------TAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEASDGIMVARGD 245 (473)
T ss_pred HHHCCCCEEEECCCC--------------CHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhhCCcEEEchHH
Confidence 345688887764222 1467888998887754 788898888888877776 36899999987
Q ss_pred cC-----------CHHHHHHHHhcCCeEEEeCCC--------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCC
Q 022892 117 CR-----------QTDLLVAAAKTGKIINIKKGQ--------FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV 177 (290)
Q Consensus 117 ~~-----------n~~lL~~~a~~~~PVilstG~--------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~ 177 (290)
+. +..++.++.+.|+|+++.|-| ..|-.|+..+.+.+. .|-+-++|.--+..-.||-
T Consensus 246 L~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~-~G~d~v~ls~eta~G~yP~--- 321 (473)
T TIGR01064 246 LGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAIL-DGTDAVMLSGETAKGKYPV--- 321 (473)
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHH-cCCCEEEEcchhhcCCCHH---
Confidence 72 234556677889999998833 123345555555443 5766566644433223765
Q ss_pred CchhHHHHH
Q 022892 178 DPRNLEWMR 186 (290)
Q Consensus 178 dL~~i~~lk 186 (290)
.++.+|+
T Consensus 322 --~~v~~m~ 328 (473)
T TIGR01064 322 --EAVKMMA 328 (473)
T ss_pred --HHHHHHH
Confidence 4555554
No 318
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=84.67 E-value=25 Score=31.22 Aligned_cols=52 Identities=19% Similarity=0.116 Sum_probs=36.7
Q ss_pred cceecccCCcc------CCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 107 ADIIQIPAFLC------RQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 107 ~d~~kIgs~~~------~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
++.+-+-..+. .|.++++++.+ .+.||+..-|.. +.+++..+.+ .|-.-+++
T Consensus 160 a~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~-~~~di~~~~~----~Ga~gv~v 218 (234)
T cd04732 160 VKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVS-SLDDIKALKE----LGVAGVIV 218 (234)
T ss_pred CCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCC-CHHHHHHHHH----CCCCEEEE
Confidence 66665554432 46788888765 589999999999 9999887654 36555554
No 319
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=84.58 E-value=11 Score=35.72 Aligned_cols=72 Identities=10% Similarity=0.013 Sum_probs=55.0
Q ss_pred HHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCC-------ccCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHH
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAF-------LCRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~-------~~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~A 149 (290)
+.+..++.|+.++..+.+.+.+..+.+ .+|++.+=++ ...+..|+.++.. .+.||+..-|.. +.+++..+
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~-~~~~~~~a 179 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIA-DGRGMAAA 179 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCC-CHHHHHHH
Confidence 344446669999999999888888877 6999987221 3346788888764 579999999998 99888877
Q ss_pred HH
Q 022892 150 AE 151 (290)
Q Consensus 150 ve 151 (290)
..
T Consensus 180 l~ 181 (307)
T TIGR03151 180 FA 181 (307)
T ss_pred HH
Confidence 64
No 320
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=84.51 E-value=3.2 Score=38.70 Aligned_cols=133 Identities=14% Similarity=0.112 Sum_probs=76.1
Q ss_pred HhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEecc-cc---ccCCCCCc-------ccCCCCCh-hHH
Q 022892 8 FNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKS-SF---DKANRTSS-------KSFRGPGM-VEG 75 (290)
Q Consensus 8 ~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~-~~---~k~~rts~-------~~~~g~~~-~~~ 75 (290)
+..+...-.+-|.+-... +.+...++|+.+.+ +|++++... ++ ..+.|+.. ..+.|..+ .-.
T Consensus 149 v~~vr~~~~~pv~vKi~~--~~~~~~~~a~~l~~----~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~ 222 (300)
T TIGR01037 149 VKAVKDKTDVPVFAKLSP--NVTDITEIAKAAEE----AGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIA 222 (300)
T ss_pred HHHHHHhcCCCEEEECCC--ChhhHHHHHHHHHH----cCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHH
Confidence 344433222345555443 55566777776665 699987532 11 10011110 11222111 124
Q ss_pred HHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHH
Q 022892 76 LKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMV 147 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~ 147 (290)
+++++++++..++|++. -+++++++..+.. .+|.++||...+.+..+.+.+.+-=.-..-..|.. +++|+.
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~~-~~~e~~ 296 (300)
T TIGR01037 223 LRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGFT-SIEELI 296 (300)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcCCC-CHHHHh
Confidence 67788888888999997 7888888887755 79999999999988776655433111222234444 555543
No 321
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=84.34 E-value=30 Score=32.65 Aligned_cols=84 Identities=14% Similarity=0.193 Sum_probs=52.1
Q ss_pred cceecccCCccCCHHHHHH----HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhH
Q 022892 107 ADIIQIPAFLCRQTDLLVA----AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 182 (290)
Q Consensus 107 ~d~~kIgs~~~~n~~lL~~----~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i 182 (290)
-.=|.||++++.|...++. +-..+.||||..... +. . +.| ++. + ...+
T Consensus 15 ~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~-~~----------~----------~~g----~~~--~-~~~~ 66 (283)
T PRK07998 15 EKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPT-NA----------Q----------LSG----YDY--I-YEIV 66 (283)
T ss_pred HCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHh-HH----------h----------hCC----HHH--H-HHHH
Confidence 4457888898888876644 345688888876543 11 0 011 110 0 1123
Q ss_pred HHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 183 EWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 183 ~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
..+.+ +++||.+--||+. . ......|+.+|.+.+|+
T Consensus 67 ~~~A~~~~vPV~lHLDH~~----------------~-----~e~i~~Ai~~GftSVM~ 103 (283)
T PRK07998 67 KRHADKMDVPVSLHLDHGK----------------T-----FEDVKQAVRAGFTSVMI 103 (283)
T ss_pred HHHHHHCCCCEEEECcCCC----------------C-----HHHHHHHHHcCCCEEEE
Confidence 33444 7889998788873 2 45566788999998888
No 322
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=84.33 E-value=38 Score=33.00 Aligned_cols=112 Identities=19% Similarity=0.229 Sum_probs=68.4
Q ss_pred cceecccCCccCCHHHHHH----HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhH
Q 022892 107 ADIIQIPAFLCRQTDLLVA----AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 182 (290)
Q Consensus 107 ~d~~kIgs~~~~n~~lL~~----~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i 182 (290)
-.=|.||++++.|.+.++. +-..+.||||..... +. .+ .| +.. + ...+
T Consensus 15 ~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~-~~-------~~-------------~g----~~~--~-~~~v 66 (347)
T PRK13399 15 ENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRG-AR-------KY-------------AG----DAM--L-RHMV 66 (347)
T ss_pred HCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcc-hh-------hh-------------CC----HHH--H-HHHH
Confidence 4557888888888876544 445788888877665 21 10 01 000 0 1233
Q ss_pred HHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe-eeCCCCCCCCCCCCCCChH
Q 022892 183 EWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME-VHDDPLNAPVDGPTQWPLR 259 (290)
Q Consensus 183 ~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE-kH~t~dka~~D~~~sl~p~ 259 (290)
..+.+ . .+||.+--||+. . ......|+.+|...+||- +|. +|++..++.+
T Consensus 67 ~~~ae~~~~VPVaLHLDHg~----------------~-----~e~i~~Ai~~GFtSVMiDgS~l------~~~~~~~~~e 119 (347)
T PRK13399 67 LAAAEMYPDIPICLHQDHGN----------------S-----PATCQSAIRSGFTSVMMDGSLL------ADGKTPASYD 119 (347)
T ss_pred HHHHHhcCCCcEEEECCCCC----------------C-----HHHHHHHHhcCCCEEEEeCCCC------CCCCCccCHH
Confidence 34444 5 599999889983 2 566788999999999998 554 4555566555
Q ss_pred HHHHHHHHHHHHHH
Q 022892 260 NLEELLEELVAIAK 273 (290)
Q Consensus 260 ~l~~lv~~ir~~~~ 273 (290)
|==++.+++-+...
T Consensus 120 eNI~~Trevve~Ah 133 (347)
T PRK13399 120 YNVDVTRRVTEMAH 133 (347)
T ss_pred HHHHHHHHHHHHHH
Confidence 54444444444433
No 323
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=84.31 E-value=38 Score=32.63 Aligned_cols=156 Identities=14% Similarity=0.090 Sum_probs=89.8
Q ss_pred hhH--Hhhhc-CCCCeEEEEccCCccCHH---HHHHHHHHH----H----HHHHHcCCCEEeccccccCCCCCcccCCCC
Q 022892 5 TAL--FNQLK-AAEPFFLLAGPNVIESEE---HIMRMAKHI----K----SISTKVGLPLVFKSSFDKANRTSSKSFRGP 70 (290)
Q Consensus 5 ~~~--~~~i~-~~~~~~iIAgpcsien~~---~~le~Ak~L----~----~~a~~~G~~~V~~~~~~k~~rts~~~~~g~ 70 (290)
|.| |+-=+ .-+|+.|-.++|-....+ ...+..+.+ . +..+++|+|+|-...-. +.+.... .
T Consensus 33 ~vlpf~r~e~~~~n~p~ia~~v~D~~~~~~~~~i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s----~dp~~~d-~ 107 (319)
T PRK04452 33 TALPFYHFEGPMPNPPVIAMEVFDMPPEDWPEAVKEPFGDVMNDPAAWAKKCVEEYGADMITLHLIS----TDPNGKD-K 107 (319)
T ss_pred ccccccccCCCCCCCCeEEEEEecCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCC----CCccccc-c
Confidence 445 54333 356666666776543333 334444443 2 22336789987654211 1111000 1
Q ss_pred ChhHHHHH-HHHHHHhcCCcEEEeec-----CcccHHHHhhhcc-e-ecccCCccCCHH-HHHHHHhcCCeEEEeCCCCC
Q 022892 71 GMVEGLKI-LEKVKIAYDIPIVTDVH-----ETVQCEEVGKVAD-I-IQIPAFLCRQTD-LLVAAAKTGKIINIKKGQFC 141 (290)
Q Consensus 71 ~~~~~l~~-L~~~~~~~Gi~~~s~~~-----d~~~~~~l~~~~d-~-~kIgs~~~~n~~-lL~~~a~~~~PVilstG~~~ 141 (290)
+ .+.+.+ ++++.+..++|++.... |++.++...+.+. - .-|.|-+..|+. ++..+.+.+.||+..+..
T Consensus 108 ~-~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~en~~~i~~lA~~y~~~Vva~s~~-- 184 (319)
T PRK04452 108 S-PEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEEDNYKKIAAAAMAYGHAVIAWSPL-- 184 (319)
T ss_pred h-HHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCHHHHHHHHHHHHHhCCeEEEEcHH--
Confidence 1 233444 55666889999965433 6666666655433 1 356777777776 555566789999999743
Q ss_pred CHHHHHHHHHHHHHcCC--CcEEEEeecCC
Q 022892 142 ASSVMVNSAEKVRLAGN--PNVMVCERGTM 169 (290)
Q Consensus 142 tl~e~~~Ave~i~~~Gn--~~i~L~~~gs~ 169 (290)
+++..++.++.+...|- .+ +++..++.
T Consensus 185 Dln~ak~L~~~l~~~Gi~~ed-IviDP~~~ 213 (319)
T PRK04452 185 DINLAKQLNILLTELGVPRER-IVMDPTTG 213 (319)
T ss_pred HHHHHHHHHHHHHHcCCCHHH-EEEeCCcc
Confidence 48888888888888886 44 55677664
No 324
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=84.26 E-value=12 Score=35.41 Aligned_cols=83 Identities=17% Similarity=0.340 Sum_probs=52.8
Q ss_pred CCCeEEEEccCC--ccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEE
Q 022892 14 AEPFFLLAGPNV--IESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIV 91 (290)
Q Consensus 14 ~~~~~iIAgpcs--ien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~ 91 (290)
+..++|||=-.+ .+..+..++.|+...+ +|||+|+-... ..+.++++++++..+|++
T Consensus 148 ~~d~~IiARTDa~~~~g~deAI~Ra~aY~e----AGAD~ifi~~~-----------------~~~~~i~~~~~~~~~Pl~ 206 (292)
T PRK11320 148 DPDFVIMARTDALAVEGLDAAIERAQAYVE----AGADMIFPEAM-----------------TELEMYRRFADAVKVPIL 206 (292)
T ss_pred CCCeEEEEecCcccccCHHHHHHHHHHHHH----cCCCEEEecCC-----------------CCHHHHHHHHHhcCCCEE
Confidence 456888885443 2345667777777666 69999986421 236677778888888886
Q ss_pred EeecCc-----ccHHHHhh-hcceecccCCcc
Q 022892 92 TDVHET-----VQCEEVGK-VADIIQIPAFLC 117 (290)
Q Consensus 92 s~~~d~-----~~~~~l~~-~~d~~kIgs~~~ 117 (290)
.-+... .+++.+.+ .+..+-.|....
T Consensus 207 ~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~ 238 (292)
T PRK11320 207 ANITEFGATPLFTTEELASAGVAMVLYPLSAF 238 (292)
T ss_pred EEeccCCCCCCCCHHHHHHcCCcEEEEChHHH
Confidence 544421 25666666 577776666543
No 325
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=84.13 E-value=54 Score=33.65 Aligned_cols=98 Identities=9% Similarity=0.103 Sum_probs=62.6
Q ss_pred HHHHHhcCCeEEEeC-----CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCC-EEEe
Q 022892 123 LVAAAKTGKIINIKK-----GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCP-VVAD 195 (290)
Q Consensus 123 L~~~a~~~~PVilst-----G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~p-V~~D 195 (290)
++.+-..+..|.+.. +...+++-+.+.++.+...|-..+.||..... -.|.. + ...+..+++ +..+ |++
T Consensus 128 v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~-~~P~~-v-~~li~~l~~~~~~~~i~v- 203 (526)
T TIGR00977 128 VAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGADWLVLCDTNGG-TLPHE-I-SEITTKVKRSLKQPQLGI- 203 (526)
T ss_pred HHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCCeEEEecCCCC-cCHHH-H-HHHHHHHHHhCCCCEEEE-
Confidence 344555677775432 22337888888888888889989999876652 12221 1 145666776 5554 777
Q ss_pred CCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 196 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 196 ~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+.|-. +.+...-+.+|+.+||+ .+|.-+.
T Consensus 204 H~HND------------------~GlAvANslaAv~AGA~--~Vd~Tin 232 (526)
T TIGR00977 204 HAHND------------------SGTAVANSLLAVEAGAT--MVQGTIN 232 (526)
T ss_pred EECCC------------------CChHHHHHHHHHHhCCC--EEEEecc
Confidence 66642 22334557789999998 7887665
No 326
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=84.10 E-value=43 Score=32.53 Aligned_cols=147 Identities=19% Similarity=0.147 Sum_probs=93.3
Q ss_pred CCeEEEEcc-------CCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh-c
Q 022892 15 EPFFLLAGP-------NVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA-Y 86 (290)
Q Consensus 15 ~~~~iIAgp-------csien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~-~ 86 (290)
+.+-||||. |.|-..-...++|+...+ .||.++-- .|-+..|+| .+..|+++++. .
T Consensus 117 g~~~vIAEvKrASPSkG~I~~~~dp~~iA~~Ye~----~GA~aISV-------LTd~~~F~G-----s~e~L~~vr~~~v 180 (338)
T PLN02460 117 GQPGLIAEVKKASPSRGVLRENFDPVEIAQAYEK----GGAACLSV-------LTDEKYFQG-----SFENLEAIRNAGV 180 (338)
T ss_pred CCcceEeeeccCCCCCCccCCCCCHHHHHHHHHh----CCCcEEEE-------ecCcCcCCC-----CHHHHHHHHHcCC
Confidence 347899975 223111124566666555 69988743 222333543 46777888777 8
Q ss_pred CCcEEEe--ecCcccHHHHhh-hcceecccCCccCC--H-HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCc
Q 022892 87 DIPIVTD--VHETVQCEEVGK-VADIIQIPAFLCRQ--T-DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPN 160 (290)
Q Consensus 87 Gi~~~s~--~~d~~~~~~l~~-~~d~~kIgs~~~~n--~-~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~ 160 (290)
.+|++.- +.|+.++.+... ..|++-+=+.-+.. + .|++.+..+|+-+++... +.+|+..|++. .|..=
T Consensus 181 ~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH---~~~ElerAl~~---~ga~i 254 (338)
T PLN02460 181 KCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVH---DEREMDRVLGI---EGVEL 254 (338)
T ss_pred CCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHhc---CCCCE
Confidence 9999984 667778877766 57766555555543 2 466777789999999987 88999988652 14322
Q ss_pred EEEEeecCCCCCCCCCCCchhHHHHHh
Q 022892 161 VMVCERGTMFGYNDLIVDPRNLEWMRE 187 (290)
Q Consensus 161 i~L~~~gs~~~y~~~~~dL~~i~~lk~ 187 (290)
|-+=.| +..+..+|+.....|..
T Consensus 255 IGINNR----dL~Tf~vDl~~t~~L~~ 277 (338)
T PLN02460 255 IGINNR----SLETFEVDISNTKKLLE 277 (338)
T ss_pred EEEeCC----CCCcceECHHHHHHHhh
Confidence 333223 35556788887776654
No 327
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=83.97 E-value=5.7 Score=37.61 Aligned_cols=72 Identities=17% Similarity=0.296 Sum_probs=46.0
Q ss_pred cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHH
Q 022892 188 ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEE 267 (290)
Q Consensus 188 ~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ 267 (290)
.++||.+|.+++- |...-+....+.....|+.|+=||-+.-|.| |-|-..-..-++.++++.
T Consensus 77 ~~lPv~vD~dtGf----------------G~~~nvartV~~~~~aG~agi~iEDq~~pk~--cgh~~gk~l~~~~e~v~r 138 (289)
T COG2513 77 VDLPVLVDIDTGF----------------GEALNVARTVRELEQAGAAGIHIEDQVGPKR--CGHLPGKELVSIDEMVDR 138 (289)
T ss_pred cCCceEEeccCCC----------------CcHHHHHHHHHHHHHcCcceeeeeecccchh--cCCCCCCCcCCHHHHHHH
Confidence 5799999999985 4333334445566789999999998876543 222222222345667777
Q ss_pred HHHHHHHhCC
Q 022892 268 LVAIAKVSKG 277 (290)
Q Consensus 268 ir~~~~~lg~ 277 (290)
|+.+..+..+
T Consensus 139 IkAa~~a~~~ 148 (289)
T COG2513 139 IKAAVEARRD 148 (289)
T ss_pred HHHHHHhccC
Confidence 7777666543
No 328
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=83.97 E-value=48 Score=34.49 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=85.4
Q ss_pred hcCCCCeEEEEccCCcc--CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh---
Q 022892 11 LKAAEPFFLLAGPNVIE--SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA--- 85 (290)
Q Consensus 11 i~~~~~~~iIAgpcsie--n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~--- 85 (290)
||-++| ..|--.+.-+ |.+..++..++|.+ +|+++|+...-. .+.-+.|.+.+++
T Consensus 25 iGG~~P-I~VQSMt~t~T~D~~atv~Qi~~L~~----aGceiVRvtvp~---------------~~~A~al~~I~~~L~~ 84 (606)
T PRK00694 25 VGSEHS-IKIQSMTTTATTDVDGTVRQICALQE----WGCDIVRVTVQG---------------LKEAQACEHIKERLIQ 84 (606)
T ss_pred ECCCCc-eEEEecCCCCcccHHHHHHHHHHHHH----cCCCEEEEcCCC---------------HHHHHhHHHHHHHHhc
Confidence 344444 4555444432 45677888888877 599999875322 2344445555555
Q ss_pred --cCCcEEEee-cCcccHHHHhhhcceecccCCccCC--------------------------HHHHHHHHhcCCeEEEe
Q 022892 86 --YDIPIVTDV-HETVQCEEVGKVADIIQIPAFLCRQ--------------------------TDLLVAAAKTGKIINIK 136 (290)
Q Consensus 86 --~Gi~~~s~~-~d~~~~~~l~~~~d~~kIgs~~~~n--------------------------~~lL~~~a~~~~PVils 136 (290)
..+|+++++ ||+..+....+.++-+-|-.+++-+ .++++.+-..++||=+=
T Consensus 85 ~g~~iPLVADIHF~~~~A~~a~~~vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIG 164 (606)
T PRK00694 85 QGISIPLVADIHFFPQAAMHVADFVDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIG 164 (606)
T ss_pred cCCCCCEEeecCCChHHHHHHHHhcCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEe
Confidence 678999998 5555555555678888888777754 25666677789998776
Q ss_pred CCCCCCHH------------HH-HHH---HHHHHHcCCCcEEEEeecC
Q 022892 137 KGQFCASS------------VM-VNS---AEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 137 tG~~~tl~------------e~-~~A---ve~i~~~Gn~~i~L~~~gs 168 (290)
++.. |++ -| +.| ++++.+.|-.++++---.|
T Consensus 165 vN~G-SL~~~i~~~yG~tpegmVeSAle~~~i~e~~~f~diviS~KsS 211 (606)
T PRK00694 165 VNHG-SLSERVMQRYGDTIEGMVYSALEYIEVCEKLDYRDVVFSMKSS 211 (606)
T ss_pred cCCc-CchHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC
Confidence 6654 443 22 222 3356667777777755544
No 329
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=83.92 E-value=10 Score=35.88 Aligned_cols=113 Identities=10% Similarity=0.097 Sum_probs=0.0
Q ss_pred cCCcc-CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHH---HHHHHHhcCCcEEEee----
Q 022892 23 PNVIE-SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKI---LEKVKIAYDIPIVTDV---- 94 (290)
Q Consensus 23 pcsie-n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~---L~~~~~~~Gi~~~s~~---- 94 (290)
|-++| ||-.+++..++-+++ |+.-||+. --.+.+++-++. ..++|+..|+.+=.|+
T Consensus 79 PV~lHLDHg~~~e~i~~ai~~----GftSVM~D------------gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vg 142 (286)
T PRK08610 79 PVAIHLDHGSSFEKCKEAIDA----GFTSVMID------------ASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVG 142 (286)
T ss_pred CEEEECCCCCCHHHHHHHHHc----CCCEEEEe------------CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccC
Q ss_pred -------------cCcccHHHHhh--hcceecccCCcc---------CCHHHHHHHHhc-CCeEEEeCCCCCCHHHHHHH
Q 022892 95 -------------HETVQCEEVGK--VADIIQIPAFLC---------RQTDLLVAAAKT-GKIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 95 -------------~d~~~~~~l~~--~~d~~kIgs~~~---------~n~~lL~~~a~~-~~PVilstG~~~tl~e~~~A 149 (290)
-||+++..+.+ .+|++.|+=+++ -|+++|+++.+. +.|++|-=|....-+++..|
T Consensus 143 g~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~a 222 (286)
T PRK08610 143 GQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKA 222 (286)
T ss_pred CccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHH
Q ss_pred HH
Q 022892 150 AE 151 (290)
Q Consensus 150 ve 151 (290)
++
T Consensus 223 i~ 224 (286)
T PRK08610 223 IP 224 (286)
T ss_pred HH
No 330
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=83.91 E-value=20 Score=34.96 Aligned_cols=64 Identities=11% Similarity=-0.133 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCC-c-cCCHHHHHHHHhcCCeE---EEeCCCCCCHHHHHHH
Q 022892 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAF-L-CRQTDLLVAAAKTGKII---NIKKGQFCASSVMVNS 149 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~-~-~~n~~lL~~~a~~~~PV---ilstG~~~tl~e~~~A 149 (290)
.+..+.+-|+++|+|++..++-.- - .|... + -+..+++.++++...-+ |+|+.-.++.++...+
T Consensus 180 ~l~~i~~ea~~~GlPlv~~~YpRG-~----------~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v 248 (348)
T PRK09250 180 EISEAFEEAHELGLATVLWSYLRN-S----------AFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAI 248 (348)
T ss_pred HHHHHHHHHHHhCCCEEEEecccC-c----------ccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHh
Confidence 455567788999999988543221 0 00000 1 12345666666544433 4777766566665543
No 331
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=83.82 E-value=19 Score=31.89 Aligned_cols=81 Identities=11% Similarity=0.030 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCC------cc---CCHHHHHHHHh-cCCeEEEeCCCCCCHHHH
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAF------LC---RQTDLLVAAAK-TGKIINIKKGQFCASSVM 146 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~------~~---~n~~lL~~~a~-~~~PVilstG~~~tl~e~ 146 (290)
.+.+.+++.+++++..+.+.+.+..+.+ .+|++.+-+. .- ....+++++.+ .++||++.-|.. +.+++
T Consensus 93 ~~~~~~~~~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~-~~~~v 171 (236)
T cd04730 93 EVVERLKAAGIKVIPTVTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIA-DGRGI 171 (236)
T ss_pred HHHHHHHHcCCEEEEeCCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCC-CHHHH
Confidence 3455566789999998888777777666 5888877332 11 23456776653 589999999988 77777
Q ss_pred HHHHHHHHHcCCCcEEE
Q 022892 147 VNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 147 ~~Ave~i~~~Gn~~i~L 163 (290)
..+++ .|..-+++
T Consensus 172 ~~~l~----~GadgV~v 184 (236)
T cd04730 172 AAALA----LGADGVQM 184 (236)
T ss_pred HHHHH----cCCcEEEE
Confidence 76653 46544444
No 332
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=83.82 E-value=11 Score=35.65 Aligned_cols=93 Identities=8% Similarity=0.019 Sum_probs=56.9
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s 92 (290)
++++-||+|.++. +.+.+++.|+. |+++|+|+|..- .|+.|. +.-++-+...+++|+.. ++|++-
T Consensus 75 ~grvpvi~Gv~~~-~t~~ai~~a~~----A~~~Gad~vlv~--------~P~y~~-~~~~~l~~yf~~va~a~~~lPv~i 140 (309)
T cd00952 75 AGRVPVFVGATTL-NTRDTIARTRA----LLDLGADGTMLG--------RPMWLP-LDVDTAVQFYRDVAEAVPEMAIAI 140 (309)
T ss_pred CCCCCEEEEeccC-CHHHHHHHHHH----HHHhCCCEEEEC--------CCcCCC-CCHHHHHHHHHHHHHhCCCCcEEE
Confidence 5677899999863 55555555554 555799987653 122122 22134566788888888 688874
Q ss_pred e--------ecCcccHHHHhh--hcceecccCCccCCHH
Q 022892 93 D--------VHETVQCEEVGK--VADIIQIPAFLCRQTD 121 (290)
Q Consensus 93 ~--------~~d~~~~~~l~~--~~d~~kIgs~~~~n~~ 121 (290)
= .++++.+..|.+ .+-.+|-.+ ++.+..
T Consensus 141 Yn~P~~tg~~l~~~~l~~L~~~pnivgiKdss-d~~~~~ 178 (309)
T cd00952 141 YANPEAFKFDFPRAAWAELAQIPQVVAAKYLG-DIGALL 178 (309)
T ss_pred EcCchhcCCCCCHHHHHHHhcCCCEEEEEecC-ChHHHH
Confidence 1 344455555554 356677777 665543
No 333
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=83.77 E-value=11 Score=35.51 Aligned_cols=76 Identities=9% Similarity=0.082 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCcEEEee-----------------cCcccHHHHh-h-hcceecccCCcc---------CCHHHHHHHH
Q 022892 76 LKILEKVKIAYDIPIVTDV-----------------HETVQCEEVG-K-VADIIQIPAFLC---------RQTDLLVAAA 127 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~-----------------~d~~~~~~l~-~-~~d~~kIgs~~~---------~n~~lL~~~a 127 (290)
-++..++|+..|+.+=.|. -||+++..+. + .+|++.|+=+++ -|+++|+++.
T Consensus 120 Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~ 199 (285)
T PRK07709 120 TKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVR 199 (285)
T ss_pred HHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHH
Confidence 4457788888888775543 3555554443 3 688888776655 4667777765
Q ss_pred h-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 128 K-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 128 ~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
+ ++.|++|-=|....-+++..|++
T Consensus 200 ~~~~iPLVLHGgSG~~~e~~~~ai~ 224 (285)
T PRK07709 200 DFTGVPLVLHGGTGIPTADIEKAIS 224 (285)
T ss_pred HHHCCCEEEeCCCCCCHHHHHHHHH
Confidence 3 57888776666645566666543
No 334
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=83.72 E-value=27 Score=34.32 Aligned_cols=130 Identities=15% Similarity=0.105 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHHHHH-cCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh
Q 022892 28 SEEHIMRMAKHIKSISTK-VGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV 106 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~-~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~ 106 (290)
+.+...+.|+++.+...+ .| .-.+...+--.+|+ |-.+-+.+..+...+.|+|++---||++.+....+.
T Consensus 108 ~e~el~~r~~~I~~f~~ervG-e~L~LDgvair~~S--------gdpekfa~ave~v~~~~~pv~l~s~dpevmkaaLev 178 (467)
T COG1456 108 DEEELVERANEIANFRKERVG-EKLKLDGVAIRNRS--------GDPEKFAEAVEKVAEAGLPVILCSFDPEVMKAALEV 178 (467)
T ss_pred CHHHHHHHHHHHHHHHHhhhc-ceeeeeeEEEEecC--------CCHHHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Confidence 466788888888876543 23 11222211110222 113567777777889999999999999988776553
Q ss_pred cc---eecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 022892 107 AD---IIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 107 ~d---~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~ 169 (290)
+. =+--++..=+.-++++.+...+.|+.|+.- .+++++++-+..+++.|-.+|+ ++-|+.
T Consensus 179 ~~dqkPllYaAte~n~~e~~klav~y~vplvl~a~--~dl~~lk~la~~~~~~Gi~div-LdPgT~ 241 (467)
T COG1456 179 VKDQKPLLYAATEDNWKEFAKLAVEYKVPLVLSAF--NDLDDLKNLAVTYAQAGIKDIV-LDPGTY 241 (467)
T ss_pred hhccCceeeecccccHHHHHHHHhhcCCcEEEecc--CCHHHHHHHHHHHHHcCCceEE-ecCCcc
Confidence 22 122344444555788888889999999974 2799999999999999987754 566663
No 335
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=83.69 E-value=51 Score=33.04 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHH-HHHHHhcCCeE----EEeCCCCCCHHHHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDL-LVAAAKTGKII----NIKKGQFCASSVMVN 148 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~l-L~~~a~~~~PV----ilstG~~~tl~e~~~ 148 (290)
+-.+...+.+.+.|+.++- +||. + -|.+|... ++++.+.|.-+ -.-++.-.|++-|.+
T Consensus 98 DvVe~Fv~ka~~nGidvfR-iFDA-----l-----------ND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~ 160 (472)
T COG5016 98 DVVEKFVEKAAENGIDVFR-IFDA-----L-----------NDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVE 160 (472)
T ss_pred HHHHHHHHHHHhcCCcEEE-echh-----c-----------cchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHH
Confidence 3444555666677776652 3322 1 23466543 35555666643 334555669999999
Q ss_pred HHHHHHHcCCCcEEEEeecC-CCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHH
Q 022892 149 SAEKVRLAGNPNVMVCERGT-MFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIA 226 (290)
Q Consensus 149 Ave~i~~~Gn~~i~L~~~gs-~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a 226 (290)
-++.+..-|.+.|++=.-.. ..||. -..-+..+|+ +++||-+ ++|.. .|. ....-
T Consensus 161 ~akel~~~g~DSIciKDmaGlltP~~----ayelVk~iK~~~~~pv~l-HtH~T---------------sG~---a~m~y 217 (472)
T COG5016 161 LAKELLEMGVDSICIKDMAGLLTPYE----AYELVKAIKKELPVPVEL-HTHAT---------------SGM---AEMTY 217 (472)
T ss_pred HHHHHHHcCCCEEEeecccccCChHH----HHHHHHHHHHhcCCeeEE-ecccc---------------cch---HHHHH
Confidence 99999999988777765433 22332 2356777888 8999998 88885 342 23345
Q ss_pred HHHHHcCCCEEEEeeeCCCCC-------------CCC--CCCCCCChHHHHHHHHHHHHHHHHh
Q 022892 227 RTAIAVGVDGVFMEVHDDPLN-------------APV--DGPTQWPLRNLEELLEELVAIAKVS 275 (290)
Q Consensus 227 ~aAva~GA~G~~IEkH~t~dk-------------a~~--D~~~sl~p~~l~~lv~~ir~~~~~l 275 (290)
.+|+.+||| +|..-..|=. ++. +...-++.+.+++..+..+.+++-.
T Consensus 218 lkAvEAGvD--~iDTAisp~S~gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~~~yf~~vrkkY 279 (472)
T COG5016 218 LKAVEAGVD--GIDTAISPLSGGTSQPATETMVAALRGTGYDTGLDLELLEEIAEYFREVRKKY 279 (472)
T ss_pred HHHHHhCcc--hhhhhhccccCCCCCCcHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 578999999 6665443322 111 4445677777877777777766544
No 336
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=83.59 E-value=12 Score=38.23 Aligned_cols=123 Identities=17% Similarity=0.105 Sum_probs=73.4
Q ss_pred ecCcccHHHHhh-hcceecccCCccCCH---HHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE-ee
Q 022892 94 VHETVQCEEVGK-VADIIQIPAFLCRQT---DLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC-ER 166 (290)
Q Consensus 94 ~~d~~~~~~l~~-~~d~~kIgs~~~~n~---~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~-~~ 166 (290)
+.+.+-++.|.+ .+|++.|-+.+=.+. ++++++-+. +.+|+ .-+.. |.++.+++++ .|-+-|.+. |.
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi-~g~v~-t~e~a~~a~~----aGaD~i~vg~g~ 320 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVI-GGNVV-TMYQAQNLIQ----AGVDGLRVGMGS 320 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEE-EecCC-CHHHHHHHHH----cCcCEEEECCCC
Confidence 455667777776 699999887654433 467777653 24444 44455 8999888765 576544441 23
Q ss_pred c----CCC----CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEE
Q 022892 167 G----TMF----GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 237 (290)
Q Consensus 167 g----s~~----~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~ 237 (290)
| +.. ++|.. -.+..++.+.+ .++||+.|.-=.. ..-...|.++||+++
T Consensus 321 G~~~~t~~~~~~g~~~~-~~i~~~~~~~~~~~vpVIadGGI~~----------------------~~di~kAla~GA~~V 377 (505)
T PLN02274 321 GSICTTQEVCAVGRGQA-TAVYKVASIAAQHGVPVIADGGISN----------------------SGHIVKALTLGASTV 377 (505)
T ss_pred CccccCccccccCCCcc-cHHHHHHHHHHhcCCeEEEeCCCCC----------------------HHHHHHHHHcCCCEE
Confidence 3 211 12221 12223444444 6899998633211 223456799999999
Q ss_pred EEeeeCCC
Q 022892 238 FMEVHDDP 245 (290)
Q Consensus 238 ~IEkH~t~ 245 (290)
|+=+-|+-
T Consensus 378 ~vGs~~~~ 385 (505)
T PLN02274 378 MMGSFLAG 385 (505)
T ss_pred EEchhhcc
Confidence 99888764
No 337
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=83.56 E-value=34 Score=32.42 Aligned_cols=131 Identities=13% Similarity=0.057 Sum_probs=73.9
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC-------CCCCchhHHHHHhcCCCEE
Q 022892 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND-------LIVDPRNLEWMREANCPVV 193 (290)
Q Consensus 121 ~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~-------~~~dL~~i~~lk~~~~pV~ 193 (290)
++++.+.+.++.+.|.|.-. -+++. +..+...|...+.+=.-|....+.. .+.-+++|..+++.|++|.
T Consensus 91 eiv~~~~~~g~~v~l~TNG~-ll~~~---~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~ 166 (318)
T TIGR03470 91 EIVRGLVARKKFVYLCTNAL-LLEKK---LDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVT 166 (318)
T ss_pred HHHHHHHHcCCeEEEecCce-ehHHH---HHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEE
Confidence 45666666677777766644 34432 3345555655555533443211111 1122466777776778877
Q ss_pred EeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 194 ~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
+..+-.. .-..+.+..+..-+..+|++++.+-..+..+++. |+..-++.++.+++.+.+.+.
T Consensus 167 v~~tv~~---------------~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~-~~~~~l~~~e~~~~~~~~~~~ 228 (318)
T TIGR03470 167 TNTTLFN---------------DTDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAP-DQDHFLGRRQTKKLFREVLSN 228 (318)
T ss_pred EEEEEeC---------------CCCHHHHHHHHHHHHHcCCCEEEEecCccccccc-ccccccCHHHHHHHHHHHHhh
Confidence 7554211 0123345566666788999987775544444443 445568888888888776553
No 338
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=83.52 E-value=35 Score=31.03 Aligned_cols=170 Identities=17% Similarity=0.220 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCCh-hHHHHHHH---HHHHhcCCcEEEeecCcccHHHHhhh
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGM-VEGLKILE---KVKIAYDIPIVTDVHETVQCEEVGKV 106 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~-~~~l~~L~---~~~~~~Gi~~~s~~~d~~~~~~l~~~ 106 (290)
.-++.|+.|++ .|+..|+-.-.+. -.|.|. .+-++++. +..-..|+ .|-++.+.+...
T Consensus 37 dP~eia~~lr~----rgar~vYiADLda--------I~g~g~n~d~i~~l~~~~~~ivD~Gv------~dL~s~~~~l~~ 98 (229)
T COG1411 37 DPLEIAEALRE----RGARFVYIADLDA--------ILGGGDNADTIRELSSLEKVIVDVGV------RDLESHAHRLIP 98 (229)
T ss_pred ChHHHHHHHhh----ccCceEEeeehHH--------HhcCCCcHHHHHHHHhhhhheeeccc------ccccCHHHhcCC
Confidence 35889999988 4888887765552 222221 12233322 22223333 377777777777
Q ss_pred cceecccCCccCCHHHHHHHHhcCCeEEEeCCC--CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHH
Q 022892 107 ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQ--FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEW 184 (290)
Q Consensus 107 ~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~--~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~ 184 (290)
.+..-+|+.+...+.++++ ++.-.-+=+|.|- ...+++|+..|.-+...--+.++++.-++- +. ..-.|+..+..
T Consensus 99 ~~~~vv~TEt~e~~e~~e~-~r~vvslD~k~~~Ll~~~~ed~le~Vk~l~~~~~~~lIvLDi~aV-Gt-~~G~~~E~l~~ 175 (229)
T COG1411 99 AETAVVGTETLEDTEEDEE-GRIVVSLDVKGGELLGPWLEDFLETVKDLNYRRDPGLIVLDIGAV-GT-KSGPDYELLTK 175 (229)
T ss_pred Ccceeeccchhhhhhhhhc-cceEEEEecCCCeecCCCchhHHHHHHHHhccCCCCeEEEEcccc-cc-ccCCCHHHHHH
Confidence 8888899999988888776 2222223334332 124889998888776665677888877651 10 01135667776
Q ss_pred HHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 185 MRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 185 lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
... +..||.. ++.-+| .+-...+..+|++|+++-.-.
T Consensus 176 ~~~~s~~pVll-----------------GGGV~g-----~Edlel~~~~Gv~gvLvaTal 213 (229)
T COG1411 176 VLELSEHPVLL-----------------GGGVGG-----MEDLELLLGMGVSGVLVATAL 213 (229)
T ss_pred HHHhccCceee-----------------cCCcCc-----HHHHHHHhcCCCceeeehhhh
Confidence 666 5668865 111234 444445556899998886544
No 339
>PTZ00378 hypothetical protein; Provisional
Probab=83.41 E-value=24 Score=36.12 Aligned_cols=94 Identities=13% Similarity=0.032 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHhcC--CcEEEeecCcccHHHHhhh---c-ceecccCCcc--C-CHHHHHHHHh--cCCeEEEeCCCCC
Q 022892 73 VEGLKILEKVKIAYD--IPIVTDVHETVQCEEVGKV---A-DIIQIPAFLC--R-QTDLLVAAAK--TGKIINIKKGQFC 141 (290)
Q Consensus 73 ~~~l~~L~~~~~~~G--i~~~s~~~d~~~~~~l~~~---~-d~~kIgs~~~--~-n~~lL~~~a~--~~~PVilstG~~~ 141 (290)
++..+++++.++++- |.++=++|++++-+-...+ + +-++|-..|+ + |...|+..-. ..--++||-++-|
T Consensus 329 ~elieyy~~li~kYP~iIvsIEDp~~E~D~~gw~~lt~~lG~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQIG 408 (518)
T PTZ00378 329 DQLSEYVREQLQAVPDIVVYVEDTHCDEDTFGLQRLQAALGDSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCAIG 408 (518)
T ss_pred HHHHHHHHHHHHHCCCceEEEecCCCchHHHHHHHHHHHhCCeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEccccce
Confidence 566788999999997 7778899999988766552 2 4455655555 7 7888877543 3347999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcEE---EEeec
Q 022892 142 ASSVMVNSAEKVRLAGNPNVM---VCERG 167 (290)
Q Consensus 142 tl~e~~~Ave~i~~~Gn~~i~---L~~~g 167 (290)
|+.|..++++..++.|- .++ +-||.
T Consensus 409 TlSEtieav~lA~~~g~-~~v~v~vShRS 436 (518)
T PTZ00378 409 TLSDVVEIVRAVGEDEG-RAVTVLVQTLA 436 (518)
T ss_pred eHHHHHHHHHHHHHcCC-cEEccccCCCc
Confidence 99999999999988774 344 66664
No 340
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=83.35 E-value=22 Score=31.40 Aligned_cols=152 Identities=17% Similarity=0.185 Sum_probs=79.3
Q ss_pred eEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecC
Q 022892 17 FFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHE 96 (290)
Q Consensus 17 ~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d 96 (290)
+++++||..+=-..-...+|.+++.. |.. |...+.+. |+ -...++|+.|++.+|+|+......
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~----~~~-v~lis~D~--------~R----~ga~eQL~~~a~~l~vp~~~~~~~ 65 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK----GKK-VALISADT--------YR----IGAVEQLKTYAEILGVPFYVARTE 65 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT----T---EEEEEEST--------SS----THHHHHHHHHHHHHTEEEEESSTT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc----ccc-ceeecCCC--------CC----ccHHHHHHHHHHHhccccchhhcc
Confidence 56777888742233344555554432 432 22222221 33 368999999999999999874433
Q ss_pred cccHH-------HHhh-hcceecc--cCCccCCHHHHHHHHh-----cCCe--EEEeCCCCCCHHHHHHHHHHHHHcCCC
Q 022892 97 TVQCE-------EVGK-VADIIQI--PAFLCRQTDLLVAAAK-----TGKI--INIKKGQFCASSVMVNSAEKVRLAGNP 159 (290)
Q Consensus 97 ~~~~~-------~l~~-~~d~~kI--gs~~~~n~~lL~~~a~-----~~~P--VilstG~~~tl~e~~~Ave~i~~~Gn~ 159 (290)
.+..+ .+.+ ..|.+-| +++.-.+..+++++.+ ...- ++++-.+ ..+++..+.+....-+-.
T Consensus 66 ~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~--~~~~~~~~~~~~~~~~~~ 143 (196)
T PF00448_consen 66 SDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATM--GQEDLEQALAFYEAFGID 143 (196)
T ss_dssp SCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGG--GGHHHHHHHHHHHHSSTC
T ss_pred hhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEeccc--ChHHHHHHHHHhhcccCc
Confidence 32222 2222 3555554 4455555555544433 1222 3344433 466777665555444555
Q ss_pred cEEEEeecCCCCCCCCCCCchhHHH-HHhcCCCEEE
Q 022892 160 NVMVCERGTMFGYNDLIVDPRNLEW-MREANCPVVA 194 (290)
Q Consensus 160 ~i~L~~~gs~~~y~~~~~dL~~i~~-lk~~~~pV~~ 194 (290)
.+++...=. ...+.++-. +.++++||-|
T Consensus 144 ~lIlTKlDe-------t~~~G~~l~~~~~~~~Pi~~ 172 (196)
T PF00448_consen 144 GLILTKLDE-------TARLGALLSLAYESGLPISY 172 (196)
T ss_dssp EEEEESTTS-------SSTTHHHHHHHHHHTSEEEE
T ss_pred eEEEEeecC-------CCCcccceeHHHHhCCCeEE
Confidence 677655432 223333333 3448999987
No 341
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=83.26 E-value=44 Score=33.17 Aligned_cols=93 Identities=19% Similarity=0.207 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh---c-ceecccCCc--cCCHHHHHHHHhc--CCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV---A-DIIQIPAFL--CRQTDLLVAAAKT--GKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~---~-d~~kIgs~~--~~n~~lL~~~a~~--~~PVilstG~~~tl~ 144 (290)
++.++.+++.++++++.++=+|+.+++.+-+.++ + +-+.|...+ ++|..-++.+-.. ---|.+|-+..+++.
T Consensus 265 ~eai~~~~~lle~~~i~~iEdPl~~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iGGIt 344 (425)
T TIGR01060 265 EEMIEYYKELVEKYPIVSIEDGLSEEDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLT 344 (425)
T ss_pred HHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecccccCCHH
Confidence 3556666667888999999999999887766542 2 022333333 2345444443221 224556666666666
Q ss_pred HHHHHHHHHHHcCCCcEEEEee
Q 022892 145 VMVNSAEKVRLAGNPNVMVCER 166 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~ 166 (290)
++.++++..+..|- .+++.||
T Consensus 345 ea~~ia~lA~~~Gi-~~vv~h~ 365 (425)
T TIGR01060 345 ETLDAVELAKKAGY-TAVISHR 365 (425)
T ss_pred HHHHHHHHHHHcCC-cEEEecC
Confidence 66666665554432 3344455
No 342
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=83.22 E-value=6.6 Score=36.29 Aligned_cols=117 Identities=19% Similarity=0.200 Sum_probs=70.4
Q ss_pred HHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccC-----CCCCcc------cCCCCCh-hH
Q 022892 7 LFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKA-----NRTSSK------SFRGPGM-VE 74 (290)
Q Consensus 7 ~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~-----~rts~~------~~~g~~~-~~ 74 (290)
+...+...-.+-|++......+.+...+.|+.+.+ +|+|+|....-... ++..+. .+.+..+ .-
T Consensus 153 iv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~----~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~ 228 (289)
T cd02810 153 LLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAER----AGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPL 228 (289)
T ss_pred HHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHH----cCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHH
Confidence 34444432123455554443366667777777766 69998765321110 000011 0111111 23
Q ss_pred HHHHHHHHHHhc--CCcEEE--eecCcccHHHHhh-hcceecccCCccCC-HHHHHHHH
Q 022892 75 GLKILEKVKIAY--DIPIVT--DVHETVQCEEVGK-VADIIQIPAFLCRQ-TDLLVAAA 127 (290)
Q Consensus 75 ~l~~L~~~~~~~--Gi~~~s--~~~d~~~~~~l~~-~~d~~kIgs~~~~n-~~lL~~~a 127 (290)
.+++++++++.. +++++. -+.+++++..+.. .+|.++||+..+.| ..+.+.+.
T Consensus 229 ~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~i~ 287 (289)
T cd02810 229 ALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRKIK 287 (289)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHHHh
Confidence 577888888888 899986 6888777766554 79999999999998 87776653
No 343
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=83.18 E-value=47 Score=32.36 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCeE-EEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----CCCC---CCCC--chhHHHHHhcCC
Q 022892 121 DLLVAAAKTGKII-NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF----GYND---LIVD--PRNLEWMREANC 190 (290)
Q Consensus 121 ~lL~~~a~~~~PV-ilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~----~y~~---~~~d--L~~i~~lk~~~~ 190 (290)
+.++.+.+.+... ++--+.. ..++++.|++ .|-+.+.++-..|.. .... +.++ ...+...++.|+
T Consensus 56 e~i~~i~~~~~~~~i~~~~r~-~~~di~~a~~----~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~ 130 (378)
T PRK11858 56 EAIKAIAKLGLNASILALNRA-VKSDIDASID----CGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGL 130 (378)
T ss_pred HHHHHHHhcCCCeEEEEEccc-CHHHHHHHHh----CCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3566666554432 2222323 5777777654 566677777665521 1111 0111 123333444577
Q ss_pred CEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 191 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 191 pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
.|.+++-.+. .-..+++..++.++..+||+.+. ++|-.-.++|.++.++++.+++
T Consensus 131 ~v~~~~ed~~---------------r~~~~~l~~~~~~~~~~Ga~~I~----------l~DT~G~~~P~~v~~lv~~l~~ 185 (378)
T PRK11858 131 YVSFSAEDAS---------------RTDLDFLIEFAKAAEEAGADRVR----------FCDTVGILDPFTMYELVKELVE 185 (378)
T ss_pred eEEEEeccCC---------------CCCHHHHHHHHHHHHhCCCCEEE----------EeccCCCCCHHHHHHHHHHHHH
Confidence 7777443321 01246677788888999998432 2688889999999999999886
Q ss_pred H
Q 022892 271 I 271 (290)
Q Consensus 271 ~ 271 (290)
.
T Consensus 186 ~ 186 (378)
T PRK11858 186 A 186 (378)
T ss_pred h
Confidence 4
No 344
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=83.16 E-value=7.6 Score=39.14 Aligned_cols=117 Identities=17% Similarity=0.084 Sum_probs=65.9
Q ss_pred CcccHHHHhh-hcceecccCCcc---CCHHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE-----E
Q 022892 96 ETVQCEEVGK-VADIIQIPAFLC---RQTDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV-----C 164 (290)
Q Consensus 96 d~~~~~~l~~-~~d~~kIgs~~~---~n~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L-----~ 164 (290)
+.+.++.+.+ .++++.+-+..- ....+++.+.+. +.||++.++. |.++.+++++ .|-+-|.+ -
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~--t~e~a~~l~~----aGad~i~vg~g~gs 302 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVA--TAEAARALIE----AGADAVKVGIGPGS 302 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccC--CHHHHHHHHH----cCCCEEEECCCCCc
Confidence 3455555555 577776643211 233455655543 6799996664 5888887764 46544433 1
Q ss_pred eecCC----CCCCCCCCCchhHHHHHh----cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCE
Q 022892 165 ERGTM----FGYNDLIVDPRNLEWMRE----ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDG 236 (290)
Q Consensus 165 ~~gs~----~~y~~~~~dL~~i~~lk~----~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G 236 (290)
-|++. .+.| ++.++...++ .++||+.|.-=.. + .. +..|+++||+.
T Consensus 303 ~~~~r~~~~~g~p----~~~~~~~~~~~~~~~~~~viadGGi~~----------------~-----~d-i~kAla~GA~~ 356 (486)
T PRK05567 303 ICTTRIVAGVGVP----QITAIADAAEAAKKYGIPVIADGGIRY----------------S-----GD-IAKALAAGASA 356 (486)
T ss_pred cccceeecCCCcC----HHHHHHHHHHHhccCCCeEEEcCCCCC----------------H-----HH-HHHHHHhCCCE
Confidence 22322 1122 3445544433 4789987532111 1 23 34579999999
Q ss_pred EEEeeeCC
Q 022892 237 VFMEVHDD 244 (290)
Q Consensus 237 ~~IEkH~t 244 (290)
+|+=.-|+
T Consensus 357 v~~G~~~a 364 (486)
T PRK05567 357 VMLGSMLA 364 (486)
T ss_pred EEECcccc
Confidence 99987765
No 345
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=83.00 E-value=29 Score=33.24 Aligned_cols=77 Identities=9% Similarity=0.063 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCCcEEEe-e---cCcccHHHHhh-hcceecccCCccCC----------------------H---HHH
Q 022892 74 EGLKILEKVKIAYDIPIVTD-V---HETVQCEEVGK-VADIIQIPAFLCRQ----------------------T---DLL 123 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~-~---~d~~~~~~l~~-~~d~~kIgs~~~~n----------------------~---~lL 123 (290)
..++.+++++++.++|++.- + +..+.+..+.+ .+|++-|+++--+| . ..|
T Consensus 166 ~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l 245 (333)
T TIGR02151 166 GWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASL 245 (333)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHH
Confidence 45688888989999999872 3 56666777776 69999997753221 1 122
Q ss_pred HHHH--hcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 124 VAAA--KTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 124 ~~~a--~~~~PVilstG~~~tl~e~~~Ave 151 (290)
.++. ..+.||+.+-|.. +..++..++.
T Consensus 246 ~~~~~~~~~ipVIasGGI~-~~~di~kaLa 274 (333)
T TIGR02151 246 LEVRSDAPDAPIIASGGLR-TGLDVAKAIA 274 (333)
T ss_pred HHHHhcCCCCeEEEECCCC-CHHHHHHHHH
Confidence 2333 2467888888887 8888777654
No 346
>PLN02334 ribulose-phosphate 3-epimerase
Probab=82.93 E-value=35 Score=30.60 Aligned_cols=140 Identities=16% Similarity=0.084 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhc-CCcEEEe-ecCcccHHHHhh-hccee--cccC-CccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHH
Q 022892 74 EGLKILEKVKIAY-DIPIVTD-VHETVQCEEVGK-VADII--QIPA-FLCRQTDLLVAAAKTGKIINIKKGQFCASSVMV 147 (290)
Q Consensus 74 ~~l~~L~~~~~~~-Gi~~~s~-~~d~~~~~~l~~-~~d~~--kIgs-~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~ 147 (290)
+-++.++++++.. ++++++. |.| .++.+.+ .+|++ -++- .+-+-...++.+-+.++-+.++.... |+.+..
T Consensus 55 ~~~~~l~~~~~~~~~vhlmv~~p~d--~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~-t~~~~~ 131 (229)
T PLN02334 55 PVVKALRKHTDAPLDCHLMVTNPED--YVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPG-TPVEAV 131 (229)
T ss_pred HHHHHHHhcCCCcEEEEeccCCHHH--HHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCC-CCHHHH
Confidence 5677777777665 7777774 222 2344444 57877 4441 12223356677777788899998765 555544
Q ss_pred HHHHHHHHcC-CCcEEEEeecCCCCCCCCC---CCchhHHHHHh--cCCCEEEeCCCCCCCCCCCccCCCCccCCCCccc
Q 022892 148 NSAEKVRLAG-NPNVMVCERGTMFGYNDLI---VDPRNLEWMRE--ANCPVVADVTHSLQQPAGKKLDGGGVASGGLREL 221 (290)
Q Consensus 148 ~Ave~i~~~G-n~~i~L~~~gs~~~y~~~~---~dL~~i~~lk~--~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~ 221 (290)
.+ +...| .+.+.++ +. .+++.-.. ..+..+..+++ .++||.+|..=+
T Consensus 132 ~~---~~~~~~~Dyi~~~-~v-~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~---------------------- 184 (229)
T PLN02334 132 EP---VVEKGLVDMVLVM-SV-EPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVG---------------------- 184 (229)
T ss_pred HH---HHhccCCCEEEEE-EE-ecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCC----------------------
Confidence 33 22332 5555442 11 11111111 22344555555 257887752211
Q ss_pred HHHHHHHHHHcCCCEEEEeeeCC
Q 022892 222 IPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 222 ~~~~a~aAva~GA~G~~IEkH~t 244 (290)
..-.....+.||+|+++=+-++
T Consensus 185 -~e~i~~l~~aGad~vvvgsai~ 206 (229)
T PLN02334 185 -PSTIDKAAEAGANVIVAGSAVF 206 (229)
T ss_pred -HHHHHHHHHcCCCEEEEChHHh
Confidence 2334456788999999987764
No 347
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=82.89 E-value=29 Score=31.70 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=42.0
Q ss_pred CCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchh-HHHHHhcCCCE
Q 022892 118 RQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRN-LEWMREANCPV 192 (290)
Q Consensus 118 ~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~-i~~lk~~~~pV 192 (290)
-|+++++++.+ ++.||+.+-|.. +++++..+.+ .|+-+.++ .|+.+.+. .+++.. +..|++.|+||
T Consensus 186 ~~~~~~~~i~~~~~ipvia~GGi~-s~~di~~~~~----~g~~dgv~--~g~a~~~~--~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 186 YDLELTKAVSEAVKIPVIASGGAG-KPEHFYEAFT----KGKADAAL--AASVFHYR--EITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCHHHHHHHHHhCCCCEEEeCCCC-CHHHHHHHHH----cCCcceee--EhHHHhCC--CCCHHHHHHHHHHCCCcc
Confidence 46788888764 588999999999 9999987643 35433333 44432122 245544 45566677775
No 348
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.75 E-value=8.4 Score=34.72 Aligned_cols=107 Identities=15% Similarity=0.173 Sum_probs=69.2
Q ss_pred EEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcc
Q 022892 19 LLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETV 98 (290)
Q Consensus 19 iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~ 98 (290)
++.|.+.+=|.+ .+++.++ +|++.+.-..+. +.+.++|++.|++++--++++.
T Consensus 68 ~~vGaGTV~~~~----~~~~a~~----aGA~FivsP~~~-------------------~~v~~~~~~~~i~~iPG~~T~~ 120 (213)
T PRK06552 68 VLIGAGTVLDAV----TARLAIL----AGAQFIVSPSFN-------------------RETAKICNLYQIPYLPGCMTVT 120 (213)
T ss_pred eEEeeeeCCCHH----HHHHHHH----cCCCEEECCCCC-------------------HHHHHHHHHcCCCEECCcCCHH
Confidence 556777764443 4444444 699888754332 3577889999999999999999
Q ss_pred cHHHHhh-hcceecccCCccCCHHHHHHHHh-cC-CeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 022892 99 QCEEVGK-VADIIQIPAFLCRQTDLLVAAAK-TG-KIINIKKGQFCASSVMVNSAEKVRLAGN 158 (290)
Q Consensus 99 ~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~-~~-~PVilstG~~~tl~e~~~Ave~i~~~Gn 158 (290)
++....+ .+|++|+=..+..-...++.+.+ .+ .|++-.-|. +++ ++.+++. .|.
T Consensus 121 E~~~A~~~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~atGGI--~~~---N~~~~l~-aGa 177 (213)
T PRK06552 121 EIVTALEAGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMVTGGV--NLD---NVKDWFA-AGA 177 (213)
T ss_pred HHHHHHHcCCCEEEECCcccCCHHHHHHHhhhCCCCEEEEECCC--CHH---HHHHHHH-CCC
Confidence 9998877 69999992223333666777653 33 676644443 444 3444443 454
No 349
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.68 E-value=33 Score=30.09 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCc--EEEeecCcccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIP--IVTDVHETVQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~--~~s~~~d~~~~~~l~~ 105 (290)
+.+...+.++.+.+ .|+.+|-.. ++.. ...+.+....+.+.+. -..+++..++++...+
T Consensus 22 ~~~~~~~~~~~~~~----~Gv~~vqlr------------~k~~---~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~ 82 (187)
T PRK07455 22 DLELGLQMAEAVAA----GGMRLIEIT------------WNSD---QPAELISQLREKLPECIIGTGTILTLEDLEEAIA 82 (187)
T ss_pred CHHHHHHHHHHHHH----CCCCEEEEe------------CCCC---CHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHH
Confidence 56777777777776 588776432 1111 1223333333333332 2458999999998877
Q ss_pred -hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHH
Q 022892 106 -VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEW 184 (290)
Q Consensus 106 -~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~ 184 (290)
.++++-+|..+ .+.++.....+.+.++ |.. |++|+..|.+ .|-+.+-+ |+.. ...-+..+..
T Consensus 83 ~gAdgv~~p~~~---~~~~~~~~~~~~~~i~--G~~-t~~e~~~A~~----~Gadyv~~------Fpt~-~~~G~~~l~~ 145 (187)
T PRK07455 83 AGAQFCFTPHVD---PELIEAAVAQDIPIIP--GAL-TPTEIVTAWQ----AGASCVKV------FPVQ-AVGGADYIKS 145 (187)
T ss_pred cCCCEEECCCCC---HHHHHHHHHcCCCEEc--CcC-CHHHHHHHHH----CCCCEEEE------CcCC-cccCHHHHHH
Confidence 68888877765 4555555566777664 544 9999988864 57776665 3221 1234567777
Q ss_pred HHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 185 MRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 185 lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
++. + ++|++. . +|.. +.=.....+.||+|+-+=+-+.
T Consensus 146 ~~~~~~~ipvva--i------------------GGI~---~~n~~~~l~aGa~~vav~s~i~ 184 (187)
T PRK07455 146 LQGPLGHIPLIP--T------------------GGVT---LENAQAFIQAGAIAVGLSGQLF 184 (187)
T ss_pred HHhhCCCCcEEE--e------------------CCCC---HHHHHHHHHCCCeEEEEehhcc
Confidence 777 6 688764 1 2310 2223345678998876654443
No 350
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=82.41 E-value=12 Score=37.72 Aligned_cols=117 Identities=19% Similarity=0.111 Sum_probs=66.4
Q ss_pred cHHHHhh-hcceecccCCccCCH---HHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEe-----ec
Q 022892 99 QCEEVGK-VADIIQIPAFLCRQT---DLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCE-----RG 167 (290)
Q Consensus 99 ~~~~l~~-~~d~~kIgs~~~~n~---~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~-----~g 167 (290)
-+..|.+ .+|.+.|-+.+-.+. ++++++-+. +.||+.-++ +|.++.+++++ .|-+-|-+.= |+
T Consensus 229 ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~--~t~~~~~~l~~----~G~d~i~vg~g~Gs~~t 302 (475)
T TIGR01303 229 KAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNV--VSAEGVRDLLE----AGANIIKVGVGPGAMCT 302 (475)
T ss_pred HHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEecc--CCHHHHHHHHH----hCCCEEEECCcCCcccc
Confidence 3334433 577777766664443 455555554 689999444 46888777654 4553322111 23
Q ss_pred CC----CCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 168 TM----FGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 168 s~----~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
++ +++|.....+.....++++++||+.|.- ++.| ..++ -|.++||+.+|+=.-|
T Consensus 303 tr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGg--i~~~-------------------~di~-kala~GA~~vm~g~~~ 360 (475)
T TIGR01303 303 TRMMTGVGRPQFSAVLECAAEARKLGGHVWADGG--VRHP-------------------RDVA-LALAAGASNVMVGSWF 360 (475)
T ss_pred CccccCCCCchHHHHHHHHHHHHHcCCcEEEeCC--CCCH-------------------HHHH-HHHHcCCCEEeechhh
Confidence 32 2344444445555555667899987522 2111 2344 4688999999887655
No 351
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=82.33 E-value=30 Score=30.49 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=74.4
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHH--HHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVA--AAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~--~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
.++.+|+++|..++-|+|=... ..+. .+...... ....+.|++++-+.. +++++.+|++.+..
T Consensus 14 ~fR~l~~~~~~~~~~t~~~~~~-~~~~-------------~~~~~~~~~~~~~~~~p~~~qi~g~-~~~~~~~aa~~~~~ 78 (231)
T cd02801 14 PFRLLCRRYGADLVYTEMISAK-ALLR-------------GNRKRLRLLTRNPEERPLIVQLGGS-DPETLAEAAKIVEE 78 (231)
T ss_pred HHHHHHHHHCCCEEEecCEEEh-hhhh-------------cCHHHHHhhccCccCCCEEEEEcCC-CHHHHHHHHHHHHh
Confidence 3677788889777766653321 1111 11111122 235688999999877 99999999999988
Q ss_pred cCCCcEEEEeecCCC------CCC-----CCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHH
Q 022892 156 AGNPNVMVCERGTMF------GYN-----DLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIP 223 (290)
Q Consensus 156 ~Gn~~i~L~~~gs~~------~y~-----~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~ 223 (290)
.|-+ .+=+|+|.-. +|. +.......+..+++ .++||.++..-+. ...+...
T Consensus 79 aG~d-~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~----------------~~~~~~~ 141 (231)
T cd02801 79 LGAD-GIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGW----------------DDEEETL 141 (231)
T ss_pred cCCC-EEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc----------------CCchHHH
Confidence 7864 4445665410 121 11222345566666 5678877544321 0011224
Q ss_pred HHHHHHHHcCCCEEEEeee
Q 022892 224 CIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 224 ~~a~aAva~GA~G~~IEkH 242 (290)
.++.....+|++. |..|
T Consensus 142 ~~~~~l~~~Gvd~--i~v~ 158 (231)
T cd02801 142 ELAKALEDAGASA--LTVH 158 (231)
T ss_pred HHHHHHHHhCCCE--EEEC
Confidence 4555566789984 4445
No 352
>PLN02858 fructose-bisphosphate aldolase
Probab=82.32 E-value=28 Score=39.82 Aligned_cols=128 Identities=13% Similarity=0.151 Sum_probs=77.1
Q ss_pred CCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEee
Q 022892 87 DIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCER 166 (290)
Q Consensus 87 Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~ 166 (290)
|+|++|=+=..-+-+-|.+.+..+.=++| ++-.++|+.+-+-+..|.==| .. +++.+...++...+.+ ..++|..-
T Consensus 1071 glpvVtk~G~~G~~~tL~~~~~~l~~~~~-v~~~~~l~~A~~~~yav~afn-~~-n~e~~~avi~aAe~~~-sPvIl~~~ 1146 (1378)
T PLN02858 1071 GVPYIVFPGNVGDSTALAEVVKSWARPAR-SSTKELLLNAEKGGYAVGAFN-VY-NLEGIEAVVAAAEAEK-SPAILQVH 1146 (1378)
T ss_pred CCcEEEeCCcCCChHHHHHHHHHhcCcCC-ccHHHHHHHHHHCCcEEEEEE-eC-CHHHHHHHHHHHHHhC-CCEEEECC
Confidence 66777766666666666666777777777 445567776665555554333 22 5666666666555553 34555443
Q ss_pred cCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 167 GTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 167 gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
-....|....+ ...+..+.+ +.+||.+--||+. . ......|+.+|.+.+||.
T Consensus 1147 ~~~~~~~~~~~-~~~~~~~a~~~~vpV~lHLDHg~----------------~-----~~~i~~ai~~Gf~SVM~D 1199 (1378)
T PLN02858 1147 PGALKQGGIPL-VSCCIAAAEQASVPITVHFDHGT----------------S-----KHELLEALELGFDSVMVD 1199 (1378)
T ss_pred ccHHhhcCHHH-HHHHHHHHHHCCCCEEEECCCCC----------------C-----HHHHHHHHHhCCCEEEEe
Confidence 22222322111 122333444 7899999888983 2 566778899999988886
No 353
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=82.21 E-value=20 Score=31.01 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=55.6
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE---eecCcccHHHHhh-hcceeccc-CC
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT---DVHETVQCEEVGK-VADIIQIP-AF 115 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s---~~~d~~~~~~l~~-~~d~~kIg-s~ 115 (290)
+.+.++|++.+..-... . .+.+..+.+++++.|++++. ++.++.++..+.+ .+|++++. ++
T Consensus 71 ~~~~~aGad~i~~h~~~-------------~-~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~ 136 (202)
T cd04726 71 EMAFKAGADIVTVLGAA-------------P-LSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGI 136 (202)
T ss_pred HHHHhcCCCEEEEEeeC-------------C-HHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcc
Confidence 44445688876653211 1 23467788889999999985 5556666655455 69998883 33
Q ss_pred cc------CCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHH
Q 022892 116 LC------RQTDLLVAAAK-TGKIINIKKGQFCASSVMVN 148 (290)
Q Consensus 116 ~~------~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~ 148 (290)
+. ...+.++++.+ .+.||...=|.. .+.+..
T Consensus 137 ~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~--~~~i~~ 174 (202)
T cd04726 137 DAQAAGGWWPEDDLKKVKKLLGVKVAVAGGIT--PDTLPE 174 (202)
T ss_pred cccccCCCCCHHHHHHHHhhcCCCEEEECCcC--HHHHHH
Confidence 22 22455555544 456777766653 555443
No 354
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=82.21 E-value=41 Score=30.92 Aligned_cols=83 Identities=11% Similarity=-0.014 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCCcEEEee--cCcccHHHHhh-hcceecccCCccCCHH----------------HHHHHHhcCCeEE
Q 022892 74 EGLKILEKVKIAYDIPIVTDV--HETVQCEEVGK-VADIIQIPAFLCRQTD----------------LLVAAAKTGKIIN 134 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~--~d~~~~~~l~~-~~d~~kIgs~~~~n~~----------------lL~~~a~~~~PVi 134 (290)
+.+..+.+..++.|+.+..++ .+++.++.+.+ .++.+.++-. . +.. .++.+.+.|.+|.
T Consensus 98 ~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E-~-~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~ 175 (296)
T TIGR00433 98 EYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDYYNHNLD-T-SQEFYSNIISTHTYDDRVDTLENAKKAGLKVC 175 (296)
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCEEEEccc-C-CHHHHhhccCCCCHHHHHHHHHHHHHcCCEEE
Confidence 456667777788899886664 77888888877 5888777644 2 222 2344455677753
Q ss_pred Ee--CCCCCCHHHHHHHHHHHHHcCC
Q 022892 135 IK--KGQFCASSVMVNSAEKVRLAGN 158 (290)
Q Consensus 135 ls--tG~~~tl~e~~~Ave~i~~~Gn 158 (290)
.- .|..-+.+++.+.++.+...|-
T Consensus 176 ~~~i~Gl~et~~d~~~~~~~l~~l~~ 201 (296)
T TIGR00433 176 SGGIFGLGETVEDRIGLALALANLPP 201 (296)
T ss_pred EeEEEeCCCCHHHHHHHHHHHHhCCC
Confidence 21 3555688999999988877653
No 355
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=82.09 E-value=5.5 Score=38.11 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=80.1
Q ss_pred HHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCC-----C---cc--cC---CCCCh-
Q 022892 7 LFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRT-----S---SK--SF---RGPGM- 72 (290)
Q Consensus 7 ~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rt-----s---~~--~~---~g~~~- 72 (290)
|.+.+....+.-|++-+.- |.+...+.|+.+.+ +|+|.|....-.. +|. + .. .+ -|..+
T Consensus 152 l~~~vk~~~~~Pv~vKl~P--~~~di~~iA~~~~~----~g~Dgl~~~NT~~-~~~~id~~~~~~~~~~~~GGLSG~~ik 224 (310)
T COG0167 152 LLEAVKAATKVPVFVKLAP--NITDIDEIAKAAEE----AGADGLIAINTTK-SGMKIDLETKKPVLANETGGLSGPPLK 224 (310)
T ss_pred HHHHHHhcccCceEEEeCC--CHHHHHHHHHHHHH----cCCcEEEEEeecc-ccccccccccccccCcCCCCcCcccch
Confidence 4445544333444454443 66788888888887 5999865433221 111 0 11 11 11112
Q ss_pred hHHHHHHHHHHHhcC--CcEEEe--ecCcc-cHHHHhhhcceecccCCccCC-HHHHHHHHhcCCeEEEeCCCCCCHHHH
Q 022892 73 VEGLKILEKVKIAYD--IPIVTD--VHETV-QCEEVGKVADIIQIPAFLCRQ-TDLLVAAAKTGKIINIKKGQFCASSVM 146 (290)
Q Consensus 73 ~~~l~~L~~~~~~~G--i~~~s~--~~d~~-~~~~l~~~~d~~kIgs~~~~n-~~lL~~~a~~~~PVilstG~~~tl~e~ 146 (290)
...+++++++.++.+ +|++.. +++.+ .++++...++++||++..+.. ..+.+.+.+-=.-..-+.|-. +++|+
T Consensus 225 p~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~g~~-si~d~ 303 (310)
T COG0167 225 PIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEKGFE-SIQDI 303 (310)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHHHcCCC-CHHHH
Confidence 467999999999988 999874 66666 455566689999999999988 555554433111233344444 66666
Q ss_pred HH
Q 022892 147 VN 148 (290)
Q Consensus 147 ~~ 148 (290)
..
T Consensus 304 iG 305 (310)
T COG0167 304 IG 305 (310)
T ss_pred hc
Confidence 54
No 356
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=81.85 E-value=67 Score=33.12 Aligned_cols=88 Identities=15% Similarity=0.073 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-----eecCc--------c
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT-----DVHET--------V 98 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s-----~~~d~--------~ 98 (290)
-.++|++..+ .|+|-+-+--.+. .|+++.. -+.-++.+++.+++..+|+.. +.-|+ +
T Consensus 269 Pve~a~~y~~----~Gadel~~~Di~~-~~~~~~~-----~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e 338 (538)
T PLN02617 269 PVELAGQYYK----DGADEVAFLNITG-FRDFPLG-----DLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLE 338 (538)
T ss_pred HHHHHHHHHH----cCCCEEEEEECCC-CcCCccc-----chhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHH
Confidence 4677777776 5999776655542 2222210 023488899999999999876 44442 4
Q ss_pred cHHHHhh-hcceecccCCccCC------------HHHHHHHHhc
Q 022892 99 QCEEVGK-VADIIQIPAFLCRQ------------TDLLVAAAKT 129 (290)
Q Consensus 99 ~~~~l~~-~~d~~kIgs~~~~n------------~~lL~~~a~~ 129 (290)
+++.+-+ .+|-+-|+|.-+.| .+|++++++.
T Consensus 339 ~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~ 382 (538)
T PLN02617 339 VASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRV 382 (538)
T ss_pred HHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHH
Confidence 4555544 69999999977775 5899998754
No 357
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=81.74 E-value=94 Score=35.17 Aligned_cols=203 Identities=15% Similarity=0.171 Sum_probs=111.0
Q ss_pred CCCCeEEEEccCCc------------cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHH
Q 022892 13 AAEPFFLLAGPNVI------------ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILE 80 (290)
Q Consensus 13 ~~~~~~iIAgpcsi------------en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~ 80 (290)
.+.++.+|.|=+-+ +|.+.+++.|+++++ .||+++=-..- ..+..-++.++++.
T Consensus 339 ~~~~~~~IGEr~N~~G~k~~~~~i~~~d~~~a~~~A~~qve----~GA~iIDVn~~----------~~~vd~~eem~rvv 404 (1178)
T TIGR02082 339 QDSNFVNIGERTNVAGSKKFRRLIIAEDYDEALDIAKQQVE----NGAQILDINVD----------YGMLDGVAAMKRFL 404 (1178)
T ss_pred CCCceEEEeeccchhhhHHHHHHHHcCCHHHHHHHHHHHHH----CCCCEEEECCC----------CCCCCHHHHHHHHH
Confidence 44567777765533 234556666666665 69998754321 11111145566665
Q ss_pred HHHHh---c-CCcEEEeecCcccHHHHhh---hccee-cccCCcc--CCHHHHHHHHhcCCeEEEeC----CCCCCHH--
Q 022892 81 KVKIA---Y-DIPIVTDVHETVQCEEVGK---VADII-QIPAFLC--RQTDLLVAAAKTGKIINIKK----GQFCASS-- 144 (290)
Q Consensus 81 ~~~~~---~-Gi~~~s~~~d~~~~~~l~~---~~d~~-kIgs~~~--~n~~lL~~~a~~~~PVilst----G~~~tl~-- 144 (290)
....+ . ++|+.-+-++++.++...+ ..+++ -|.+.+. .-..++..+++.|.||++-+ |+..|.+
T Consensus 405 ~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~IINsIs~~~g~~~~~~~~~l~~~yga~vV~m~~de~G~p~t~e~r 484 (1178)
T TIGR02082 405 NLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIVNSISLKDGEERFIETAKLIKEYGAAVVVMAFDEEGQARTADRK 484 (1178)
T ss_pred HHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCHHHH
Confidence 55543 2 8999999999888887655 23332 4444321 21246677889999988765 6665554
Q ss_pred --HHHHHHHHHHH-cCC-CcEEEEeecCC---CCCCC----CCCCchhHHHHHh-c-CCCEEEe-CCCCCCCCCCCccCC
Q 022892 145 --VMVNSAEKVRL-AGN-PNVMVCERGTM---FGYND----LIVDPRNLEWMRE-A-NCPVVAD-VTHSLQQPAGKKLDG 210 (290)
Q Consensus 145 --e~~~Ave~i~~-~Gn-~~i~L~~~gs~---~~y~~----~~~dL~~i~~lk~-~-~~pV~~D-~sHs~~~~~~~~~~~ 210 (290)
.....++.+.+ .|- ++=+++.++.- ++-.. ..-.|.++..+|+ + ++|+.+- |.=|.+.||..
T Consensus 485 ~~i~~~~~~~~~~~~Gi~~edIi~DP~i~~v~~g~~e~n~~~~~~le~i~~ik~~~pg~~~~~GlSN~SFglp~~~---- 560 (1178)
T TIGR02082 485 IEICKRAYNILTEKVGFPPEDIIFDPNILTIATGIEEHRRYAINFIEAIRWIKEELPDAKISGGVSNVSFSFRGNP---- 560 (1178)
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEEeCCccccccCchHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCCCCCc----
Confidence 44455556665 673 35677888864 33110 0123455555665 4 7775441 33333233200
Q ss_pred CCccCCCCcccHHHH-HHHHHHcCCCEEEE
Q 022892 211 GGVASGGLRELIPCI-ARTAIAVGVDGVFM 239 (290)
Q Consensus 211 ~~~~~~g~~~~~~~~-a~aAva~GA~G~~I 239 (290)
-.|+.+..+ -..|+..|-+.-++
T Consensus 561 ------~~R~~ln~~FL~~a~~~Gld~aIv 584 (1178)
T TIGR02082 561 ------AAREAMHSVFLYHAIRAGMDMGIV 584 (1178)
T ss_pred ------hHHHHHHHHHHHHHHHcCCchhhc
Confidence 124444433 22467778664443
No 358
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=81.64 E-value=6.9 Score=35.86 Aligned_cols=65 Identities=11% Similarity=0.252 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCC--cccCCCCChhHHHHHHHHHHHhcCCcEEEeecC
Q 022892 29 EEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTS--SKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHE 96 (290)
Q Consensus 29 ~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts--~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d 96 (290)
.+..++..++.+++|+++|+..|.+..+.. +... ...+. .+.+.|+++.++++++|+.+.-|.++
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~-~~~~~~~~~~~--~~~~~l~~l~~~A~~~Gv~l~lE~~~ 155 (279)
T TIGR00542 89 RQQGLEIMEKAIQLARDLGIRTIQLAGYDV-YYEEHDEETRR--RFREGLKEAVELAARAQVTLAVEIMD 155 (279)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEecCccc-ccCcCCHHHHH--HHHHHHHHHHHHHHHcCCEEEEeeCC
Confidence 445788899999999999999886643321 1000 00011 01367888899999999999999764
No 359
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=81.59 E-value=26 Score=30.51 Aligned_cols=101 Identities=15% Similarity=0.061 Sum_probs=58.1
Q ss_pred HHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCc----ccHHHHhh-hcceecccCCc-
Q 022892 43 STKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHET----VQCEEVGK-VADIIQIPAFL- 116 (290)
Q Consensus 43 a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~----~~~~~l~~-~~d~~kIgs~~- 116 (290)
+.++|+++|....+.. ...+..+.++++++|++++....++ +.+..+.+ .+|++++...-
T Consensus 72 ~~~~Gad~i~vh~~~~--------------~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~ 137 (206)
T TIGR03128 72 AFAAGADIVTVLGVAD--------------DATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLD 137 (206)
T ss_pred HHHcCCCEEEEeccCC--------------HHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcC
Confidence 4446888887553321 2346778888999999999877665 34455555 69999886421
Q ss_pred --c---CCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEE
Q 022892 117 --C---RQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVM 162 (290)
Q Consensus 117 --~---~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~ 162 (290)
. ...+.++++.+ ...|.+.=.|-- +.+.+... ...|..-++
T Consensus 138 ~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~----~~~Ga~~v~ 184 (206)
T TIGR03128 138 EQAKGQNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDV----IKLGPDIVI 184 (206)
T ss_pred cccCCCCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHH----HHcCCCEEE
Confidence 1 23444555443 233444323433 66665543 345654333
No 360
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=81.52 E-value=32 Score=31.80 Aligned_cols=142 Identities=15% Similarity=0.103 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHH-HHHHhcCCcEEEeecCcccHHHHhhhcceecc
Q 022892 34 RMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILE-KVKIAYDIPIVTDVHETVQCEEVGKVADIIQI 112 (290)
Q Consensus 34 e~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~-~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kI 112 (290)
+.+.++.+.+.++|-|+|+-..-+ +.. ++.+..+- +.++..++|++-+|-++..+-. ++|.+-+
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~-----------gvt-~~~~~~~v~~ik~~~~lPvilfP~~~~~is~---~aDavff 92 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSD-----------GVT-EENVDNVVEAIKERTDLPVILFPGSPSGISP---YADAVFF 92 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcc-----------ccc-HHHHHHHHHHHHhhcCCCEEEecCChhccCc---cCCeEEE
Confidence 444445555556799999875322 222 34455544 4445999999999999877654 5666655
Q ss_pred cCCcc-CCHH--------HHHHHHhcCC---e---EEEeCCCC-----------CCHHHHHHHHHHHHHcCCCcEEEEee
Q 022892 113 PAFLC-RQTD--------LLVAAAKTGK---I---INIKKGQF-----------CASSVMVNSAEKVRLAGNPNVMVCER 166 (290)
Q Consensus 113 gs~~~-~n~~--------lL~~~a~~~~---P---VilstG~~-----------~tl~e~~~Ave~i~~~Gn~~i~L~~~ 166 (290)
+|=.- .|.. -...+++.+. | |++.-|.. -+-+++..+...-.+-=+-.++-+|-
T Consensus 93 ~svLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEa 172 (240)
T COG1646 93 PSVLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEA 172 (240)
T ss_pred EEEecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEe
Confidence 54322 1211 1122233222 1 23332221 13455555543222222357888999
Q ss_pred cCCCCCCCCCCCchhHHHHHhcCCCEEE
Q 022892 167 GTMFGYNDLIVDPRNLEWMREANCPVVA 194 (290)
Q Consensus 167 gs~~~y~~~~~dL~~i~~lk~~~~pV~~ 194 (290)
|+.+++|. ....+...++ ..++++
T Consensus 173 gsga~~Pv---~~e~v~~v~~-~~~Liv 196 (240)
T COG1646 173 GSGAGDPV---PVEMVSRVLS-DTPLIV 196 (240)
T ss_pred cCCCCCCc---CHHHHHHhhc-cceEEE
Confidence 88766553 3455544443 226655
No 361
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=81.45 E-value=6.8 Score=36.97 Aligned_cols=83 Identities=19% Similarity=0.196 Sum_probs=51.2
Q ss_pred eecccCCccCCHHHHH----HHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHH
Q 022892 109 IIQIPAFLCRQTDLLV----AAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEW 184 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~----~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~ 184 (290)
=|.||++++.|.+.++ ++-..+.||||..... +..-+ ..+.+ ...+..
T Consensus 16 ~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~-~~~~~--~~~~~-------------------------~~~~~~ 67 (287)
T PF01116_consen 16 GYAVPAFNVYNLETARAVIEAAEELNSPVILQISPS-EVKYM--GLEYL-------------------------AAMVKA 67 (287)
T ss_dssp T-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHH-HHHHH--HHHHH-------------------------HHHHHH
T ss_pred CCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchh-hhhhh--hHHHH-------------------------HHHHHH
Confidence 3678888888887554 4456788999987755 32222 00100 123344
Q ss_pred HHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 185 MRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 185 lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
+.+ +++||.+--||+. . ......|+..|.+.+|+-
T Consensus 68 ~a~~~~vPValHLDH~~----------------~-----~e~i~~ai~~GftSVM~D 103 (287)
T PF01116_consen 68 AAEEASVPVALHLDHGK----------------D-----FEDIKRAIDAGFTSVMID 103 (287)
T ss_dssp HHHHSTSEEEEEEEEE-----------------S-----HHHHHHHHHHTSSEEEEE
T ss_pred HHHHcCCCEEeecccCC----------------C-----HHHHHHHHHhCccccccc
Confidence 444 7899988778873 2 567778888999988875
No 362
>PLN02979 glycolate oxidase
Probab=81.36 E-value=30 Score=33.94 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 022892 121 DLLVAAAKTGKIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 121 ~lL~~~a~~~~PVilstG~~~tl~e~~~A 149 (290)
.+-+++++.|.|.++||..+.++||+..+
T Consensus 90 a~ARAA~~agi~~~lSt~ss~slEeIa~a 118 (366)
T PLN02979 90 ATARAASAAGTIMTLSSWATSSVEEVAST 118 (366)
T ss_pred HHHHHHHHcCCCeeeccCcCCCHHHHHhc
Confidence 56788999999999999999999999876
No 363
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=81.30 E-value=22 Score=33.42 Aligned_cols=100 Identities=15% Similarity=0.057 Sum_probs=62.2
Q ss_pred HHHHHHHh-c--CCeEEEeCCCC------CCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCC-------CCCCCchhHH
Q 022892 121 DLLVAAAK-T--GKIINIKKGQF------CASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYN-------DLIVDPRNLE 183 (290)
Q Consensus 121 ~lL~~~a~-~--~~PVilstG~~------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~-------~~~~dL~~i~ 183 (290)
+.++++.+ . +.||.++-... .+.+|+...++.+...|-.-|++ +.++.. ++. ....++..+.
T Consensus 196 eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~v-s~g~~~~~~~~~~~~~~~~~~~~~~~~ 274 (327)
T cd02803 196 EIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHV-SGGSYESPPPIIPPPYVPEGYFLELAE 274 (327)
T ss_pred HHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEe-CCCCCcccccccCCCCCCcchhHHHHH
Confidence 34444433 2 67999977643 36899999999898888654444 333321 111 1234566777
Q ss_pred HHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc-CCCEEEEeeeC
Q 022892 184 WMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV-GVDGVFMEVHD 243 (290)
Q Consensus 184 ~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~-GA~G~~IEkH~ 243 (290)
.+++ .++||+....-. . +..+..+++. |||++.+=+-+
T Consensus 275 ~ir~~~~iPVi~~Ggi~-----------------t-----~~~a~~~l~~g~aD~V~igR~~ 314 (327)
T cd02803 275 KIKKAVKIPVIAVGGIR-----------------D-----PEVAEEILAEGKADLVALGRAL 314 (327)
T ss_pred HHHHHCCCCEEEeCCCC-----------------C-----HHHHHHHHHCCCCCeeeecHHH
Confidence 7887 789998743322 1 4456667777 79988776655
No 364
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=81.24 E-value=7.7 Score=35.89 Aligned_cols=96 Identities=27% Similarity=0.309 Sum_probs=57.2
Q ss_pred CCHHHHHHH---HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEE
Q 022892 118 RQTDLLVAA---AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVV 193 (290)
Q Consensus 118 ~n~~lL~~~---a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~ 193 (290)
.++.+|+++ .+-|--|+-=+.-. + -.++.+...|. .+++-=++--+...--.|..++..+.+ +++||+
T Consensus 115 D~~etl~Aae~Lv~eGF~VlPY~~dD--~----v~arrLee~Gc--aavMPl~aPIGSg~G~~n~~~l~iiie~a~VPvi 186 (262)
T COG2022 115 DPIETLKAAEQLVKEGFVVLPYTTDD--P----VLARRLEEAGC--AAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVI 186 (262)
T ss_pred ChHHHHHHHHHHHhCCCEEeeccCCC--H----HHHHHHHhcCc--eEeccccccccCCcCcCCHHHHHHHHHhCCCCEE
Confidence 455566543 34455555444433 1 23345666665 344433331122222356677888888 899999
Q ss_pred EeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 194 ~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
+|.--+. +.-+..|..+|+||+++.+-.
T Consensus 187 VDAGiG~----------------------pSdAa~aMElG~DaVL~NTAi 214 (262)
T COG2022 187 VDAGIGT----------------------PSDAAQAMELGADAVLLNTAI 214 (262)
T ss_pred EeCCCCC----------------------hhHHHHHHhcccceeehhhHh
Confidence 9865432 555667899999999988765
No 365
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=81.10 E-value=5.9 Score=39.30 Aligned_cols=91 Identities=18% Similarity=0.127 Sum_probs=57.6
Q ss_pred CCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCE
Q 022892 158 NPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDG 236 (290)
Q Consensus 158 n~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G 236 (290)
|..++.+|.-+++- -...|+..+..+.+ .|..|++|.+-+. + .-..+..+|||
T Consensus 162 ~t~~V~~ESPsNPl--l~v~DI~~l~~la~~~g~~vvVDnTf~~----------------------p-~~~~pL~lGAD- 215 (409)
T KOG0053|consen 162 NTKAVFLESPSNPL--LKVPDIEKLARLAHKYGFLVVVDNTFGS----------------------P-YNQDPLPLGAD- 215 (409)
T ss_pred CceEEEEECCCCCc--cccccHHHHHHHHhhCCCEEEEeCCcCc----------------------c-cccChhhcCCC-
Confidence 56788888877522 24678888888877 8999999988762 2 12245788999
Q ss_pred EEEee---eCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 237 VFMEV---HDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 237 ~~IEk---H~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
+|.++ .+.-+...--+...+. .+++.+.++..+..+|.
T Consensus 216 IV~hSaTKyi~Ghsdvi~G~iv~n---~~~~~~~l~~~~~~lg~ 256 (409)
T KOG0053|consen 216 IVVHSATKYIGGHSDVIGGSVVLN---SEELASRLKFLQEDLGW 256 (409)
T ss_pred EEEEeeeeeecCCcceeeeEEecC---cHHHHHHHHHHHHHhcC
Confidence 77774 3322222222223333 55666666666676664
No 366
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=81.06 E-value=50 Score=32.24 Aligned_cols=131 Identities=10% Similarity=0.051 Sum_probs=78.7
Q ss_pred cCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCC-CCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHH
Q 022892 23 PNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANR-TSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCE 101 (290)
Q Consensus 23 pcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~r-ts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~ 101 (290)
+++ +++...++...++++.|+++|..+|... |..-+. +....|. .. .+-+....+++.++|-.++=+.+-.+.-
T Consensus 169 ~Gs-~~E~~ml~~l~~i~~ea~~~GlPlv~~~-YpRG~~i~~~~d~~-~~-~d~Ia~AaRiaaELGADIVKv~yp~~~~- 243 (348)
T PRK09250 169 FGS-EESRRQIEEISEAFEEAHELGLATVLWS-YLRNSAFKKDGDYH-TA-ADLTGQANHLAATIGADIIKQKLPTNNG- 243 (348)
T ss_pred cCC-HHHHHHHHHHHHHHHHHHHhCCCEEEEe-cccCcccCCccccc-cc-HHHHHHHHHHHHHHcCCEEEecCCCChh-
Confidence 444 3556678888999999999998877643 321011 1111111 01 2456778889999999999988864322
Q ss_pred HHhhh-cceecc----cCCccCCHHHHHHH-Hhc---CCeEEEeCCCCCCHHHHHHHHHHH---HHcCC
Q 022892 102 EVGKV-ADIIQI----PAFLCRQTDLLVAA-AKT---GKIINIKKGQFCASSVMVNSAEKV---RLAGN 158 (290)
Q Consensus 102 ~l~~~-~d~~kI----gs~~~~n~~lL~~~-a~~---~~PVilstG~~~tl~e~~~Ave~i---~~~Gn 158 (290)
.+.+. ....+. .-..-++.++++++ ... +.||+++=|...+.+|+++.++-. ...|.
T Consensus 244 ~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa 312 (348)
T PRK09250 244 GYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGG 312 (348)
T ss_pred hHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCC
Confidence 22221 111111 11112455666654 343 789999999997888888888766 66665
No 367
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.00 E-value=13 Score=33.84 Aligned_cols=96 Identities=13% Similarity=0.057 Sum_probs=66.8
Q ss_pred EEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCc
Q 022892 18 FLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHET 97 (290)
Q Consensus 18 ~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~ 97 (290)
-++.|.+.+=|.+ .+++.++ +|++.+.-..++ +.+.++|++.|++++-=++.|
T Consensus 70 ~~~vGaGTVl~~e----~a~~a~~----aGA~FiVsP~~~-------------------~~v~~~~~~~~i~~iPG~~Tp 122 (222)
T PRK07114 70 GMILGVGSIVDAA----TAALYIQ----LGANFIVTPLFN-------------------PDIAKVCNRRKVPYSPGCGSL 122 (222)
T ss_pred CeEEeeEeCcCHH----HHHHHHH----cCCCEEECCCCC-------------------HHHHHHHHHcCCCEeCCCCCH
Confidence 3566777764443 3444444 699887754433 357789999999999999999
Q ss_pred ccHHHHhh-hcceecccCCccCCHHHHHHHHh-c-CCeEEEeCCCC
Q 022892 98 VQCEEVGK-VADIIQIPAFLCRQTDLLVAAAK-T-GKIINIKKGQF 140 (290)
Q Consensus 98 ~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~-~-~~PVilstG~~ 140 (290)
.++....+ .++++|+=-..+--..+++.+.. . +.|++=.=|..
T Consensus 123 sEi~~A~~~Ga~~vKlFPA~~~G~~~ikal~~p~p~i~~~ptGGV~ 168 (222)
T PRK07114 123 SEIGYAEELGCEIVKLFPGSVYGPGFVKAIKGPMPWTKIMPTGGVE 168 (222)
T ss_pred HHHHHHHHCCCCEEEECcccccCHHHHHHHhccCCCCeEEeCCCCC
Confidence 99998887 69999996555656888888765 2 33444444443
No 368
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=80.96 E-value=44 Score=30.42 Aligned_cols=173 Identities=10% Similarity=0.060 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d 108 (290)
-+++|+.+.+ .|++-+...-++.+ ++. ...+..+++.+++.-.|+.. =+-+.++++.+.+ .++
T Consensus 32 P~~~a~~~~~----~ga~~lhivDLd~a--------~~~--~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~ 97 (232)
T PRK13586 32 PIEIASKLYN----EGYTRIHVVDLDAA--------EGV--GNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVN 97 (232)
T ss_pred HHHHHHHHHH----CCCCEEEEEECCCc--------CCC--cchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCC
Confidence 5788888887 58887766555421 111 13356777777642225444 6788888887766 699
Q ss_pred eecccCCccCCHHHHHHHHhc--CCeEEEeCCC------------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC
Q 022892 109 IIQIPAFLCRQTDLLVAAAKT--GKIINIKKGQ------------FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND 174 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~~--~~PVilstG~------------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~ 174 (290)
-+-||+...+|.++++++++. +-.|++|=.. . +-.++...++.+...|-..+++. ...+-+- .
T Consensus 98 kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~-~~~~~~e~~~~l~~~g~~~ii~t-dI~~dGt-~ 174 (232)
T PRK13586 98 ALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKE-KSMEVIDGIKKVNELELLGIIFT-YISNEGT-T 174 (232)
T ss_pred EEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCee-CCCCHHHHHHHHHhcCCCEEEEe-ccccccc-C
Confidence 999999999999999997643 2344432211 1 22234455556666676565544 3332111 0
Q ss_pred CCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 175 LIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 175 ~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
.=.|+..+..+++...||++ + +|.+.. ..+... ..+|++|+++=+-+
T Consensus 175 ~G~d~el~~~~~~~~~~via--s------------------GGv~s~-~Dl~~l-~~~G~~gvivg~Al 221 (232)
T PRK13586 175 KGIDYNVKDYARLIRGLKEY--A------------------GGVSSD-ADLEYL-KNVGFDYIIVGMAF 221 (232)
T ss_pred cCcCHHHHHHHHhCCCCEEE--E------------------CCCCCH-HHHHHH-HHCCCCEEEEehhh
Confidence 11356667777663345655 1 122211 233332 36799999987654
No 369
>PRK10206 putative oxidoreductase; Provisional
Probab=80.96 E-value=3.8 Score=39.20 Aligned_cols=52 Identities=10% Similarity=0.008 Sum_probs=47.0
Q ss_pred hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 106 VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 106 ~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
.+|++-|.+-.-.+.++..++.+.||+|++.+.++.|++|.+..++..++.|
T Consensus 64 ~iD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~ 115 (344)
T PRK10206 64 DVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKG 115 (344)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhC
Confidence 6999999999999999999999999999999999999999999888666554
No 370
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=80.74 E-value=46 Score=31.97 Aligned_cols=65 Identities=18% Similarity=0.105 Sum_probs=42.7
Q ss_pred HHHHHHh----cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCC--cEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEe
Q 022892 122 LLVAAAK----TGKIINIKKGQFCASSVMVNSAEKVRLAGNP--NVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVAD 195 (290)
Q Consensus 122 lL~~~a~----~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~--~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D 195 (290)
.|+++|+ ++.|+..-|... + --.+.++.+.+.|-+ ++.|+||+-+ ++ |+.....|+..|.-+.||
T Consensus 153 ~lrAaA~A~~~Tg~Pi~tHt~~g-t--~g~eq~~il~~egvdl~~v~igH~d~n---~d---d~~y~~~l~~~Ga~l~fD 223 (316)
T COG1735 153 SLRAAARAHKETGAPISTHTPAG-T--MGLEQLRILAEEGVDLRKVSIGHMDPN---TD---DVYYQKKLADRGAFLEFD 223 (316)
T ss_pred HHHHHHHHhhhcCCCeEEeccch-h--hhHHHHHHHHHcCCChhHeeEeccCCC---CC---hHHHHHHHHhcCceEEec
Confidence 4577664 688999888776 5 445667788888853 7999999843 11 334455555445555554
No 371
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=80.62 E-value=55 Score=31.55 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=84.5
Q ss_pred HhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcC--CCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh
Q 022892 8 FNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVG--LPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA 85 (290)
Q Consensus 8 ~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G--~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~ 85 (290)
++.+.+ ..+++.++++. +. ..++.+..|++. | +|+|...+= +|.. ...+..++.+++.
T Consensus 75 vrk~k~-~~L~v~~SvG~--t~-e~~~r~~~lv~a----~~~~d~i~~D~a-----------hg~s-~~~~~~i~~i~~~ 134 (321)
T TIGR01306 75 IKDMQE-RGLFASISVGV--KA-CEYEFVTQLAEE----ALTPEYITIDIA-----------HGHS-NSVINMIKHIKTH 134 (321)
T ss_pred HHhccc-cccEEEEEcCC--CH-HHHHHHHHHHhc----CCCCCEEEEeCc-----------cCch-HHHHHHHHHHHHh
Confidence 445433 34577777775 33 457888888874 6 687766421 1222 4567777778778
Q ss_pred cCCc-EEE-eecCcccHHHHhh-hcceeccc---CCcc----------C--CHHHHHHHH-hcCCeEEEeCCCCCCHHHH
Q 022892 86 YDIP-IVT-DVHETVQCEEVGK-VADIIQIP---AFLC----------R--QTDLLVAAA-KTGKIINIKKGQFCASSVM 146 (290)
Q Consensus 86 ~Gi~-~~s-~~~d~~~~~~l~~-~~d~~kIg---s~~~----------~--n~~lL~~~a-~~~~PVilstG~~~tl~e~ 146 (290)
+..+ ++. .+-+.+.+..+.+ .+|.++|| .+.+ . +..-+..++ ..+.||+..-|.. +-.++
T Consensus 135 ~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr-~~~Di 213 (321)
T TIGR01306 135 LPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIR-THGDI 213 (321)
T ss_pred CCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcC-cHHHH
Confidence 8766 555 4788888888887 79999988 2221 1 223344444 3478999999998 88888
Q ss_pred HHHHHHHHHcCCCcEEE
Q 022892 147 VNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 147 ~~Ave~i~~~Gn~~i~L 163 (290)
..|+. .|.+-+++
T Consensus 214 ~KALa----~GAd~Vmi 226 (321)
T TIGR01306 214 AKSIR----FGASMVMI 226 (321)
T ss_pred HHHHH----cCCCEEee
Confidence 87754 36654444
No 372
>PRK14725 pyruvate kinase; Provisional
Probab=80.54 E-value=23 Score=37.02 Aligned_cols=102 Identities=12% Similarity=0.051 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHhc---CCcEEEeecCcccHHHHhhh---c-----ceecccCCcc-----------CCHHHHHHHHhcC
Q 022892 73 VEGLKILEKVKIAY---DIPIVTDVHETVQCEEVGKV---A-----DIIQIPAFLC-----------RQTDLLVAAAKTG 130 (290)
Q Consensus 73 ~~~l~~L~~~~~~~---Gi~~~s~~~d~~~~~~l~~~---~-----d~~kIgs~~~-----------~n~~lL~~~a~~~ 130 (290)
.+.+..++++..+. ++.+++-+-.++.++-+.+. . |-+-|+=+|+ .|-.++..+-..+
T Consensus 456 ~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLgvEi~~e~lp~iQk~Ii~~c~~~~ 535 (608)
T PRK14725 456 PEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLAVEVGFERLAEVQEEILWLCEAAH 535 (608)
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCccccccCHHHHHHHHHHHHHHHHHcC
Confidence 47788899998876 58999999999998888773 2 8888888877 4445667777889
Q ss_pred CeEEEeCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHH
Q 022892 131 KIINIKKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMR 186 (290)
Q Consensus 131 ~PVilstG~~--------~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk 186 (290)
||||+.|-|- .|-.|+-+++..+ |.+-++|- .. .||. .++.+|.
T Consensus 536 kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv---gaD~VMLS--~G--~yPv-----eAV~~l~ 587 (608)
T PRK14725 536 VPVIWATQVLESLAKKGLPSRAEITDAAMAL---RAECVMLN--KG--PHIV-----EAVRVLD 587 (608)
T ss_pred CCEEEEcchHhhhccCCCCCchhHHHHHhhh---cCCEEeec--CC--CCHH-----HHHHHHH
Confidence 9999977653 2557777777666 66666665 22 3764 3555553
No 373
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=80.52 E-value=59 Score=31.68 Aligned_cols=113 Identities=23% Similarity=0.206 Sum_probs=70.3
Q ss_pred cceecccCCccCCHHHHHH----HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhH
Q 022892 107 ADIIQIPAFLCRQTDLLVA----AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 182 (290)
Q Consensus 107 ~d~~kIgs~~~~n~~lL~~----~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i 182 (290)
-.=|.||++++.|...+++ +-.++.||||..... +. .+ +| ++. + ...+
T Consensus 13 ~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~-~~-------~~-------------~g----~~~--~-~~~~ 64 (347)
T TIGR01521 13 EFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRG-AR-------SY-------------AG----APF--L-RHLI 64 (347)
T ss_pred HcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcc-hh-------hh-------------CC----HHH--H-HHHH
Confidence 4557899999999876654 345788888887765 21 00 11 100 0 1233
Q ss_pred HHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe-eeCCCCCCCCCCCCCCChH
Q 022892 183 EWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME-VHDDPLNAPVDGPTQWPLR 259 (290)
Q Consensus 183 ~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE-kH~t~dka~~D~~~sl~p~ 259 (290)
..+.+ . .+||.+--||+. . ......|+.+|...+||- +|. +|....++++
T Consensus 65 ~~~ae~~~~VPValHLDHg~----------------~-----~e~i~~Ai~~GFtSVMiDgS~l------~~~~~~~p~e 117 (347)
T TIGR01521 65 LAAIEEYPHIPVVMHQDHGN----------------S-----PATCQRAIQLGFTSVMMDGSLR------EDAKTPADYD 117 (347)
T ss_pred HHHHHhCCCCcEEEECCCCC----------------C-----HHHHHHHHHcCCCEEeecCcCC------cccCCCCCHH
Confidence 33444 5 499999888983 2 566778899999999987 443 3455566666
Q ss_pred HHHHHHHHHHHHHHH
Q 022892 260 NLEELLEELVAIAKV 274 (290)
Q Consensus 260 ~l~~lv~~ir~~~~~ 274 (290)
|==++.+++-++...
T Consensus 118 ENI~~Tkevve~Ah~ 132 (347)
T TIGR01521 118 YNVRVTAEVVAFAHA 132 (347)
T ss_pred HHHHHHHHHHHHHHH
Confidence 654555554444444
No 374
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=80.33 E-value=45 Score=30.18 Aligned_cols=61 Identities=7% Similarity=0.103 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCCcEEEe--ecCcccHHHHhh-hcceecccCCccCCHHHHHHHHh-cCCeEEEe
Q 022892 74 EGLKILEKVKIAYDIPIVTD--VHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAK-TGKIINIK 136 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~-~~~PVils 136 (290)
..+..+++++++.++|+... +-+.++++.+.+ .++-.-||+... |.++++++++ .+. |++|
T Consensus 60 ~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~-~~~~l~~~~~~~g~-ivvs 124 (228)
T PRK04128 60 KNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF-DLEFLEKVTSEFEG-ITVS 124 (228)
T ss_pred chHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc-CHHHHHHHHHHcCC-EEEE
Confidence 35778888888899999885 888999888777 699999999998 9999999874 344 5553
No 375
>PRK11579 putative oxidoreductase; Provisional
Probab=80.31 E-value=6.2 Score=37.48 Aligned_cols=54 Identities=22% Similarity=0.124 Sum_probs=46.6
Q ss_pred Hhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 022892 103 VGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 156 (290)
Q Consensus 103 l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~ 156 (290)
+++ .+|++-|.+-.-.+.++..++.+.||+|++.+.++.|++|....++..++.
T Consensus 60 l~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~ 114 (346)
T PRK11579 60 FNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSA 114 (346)
T ss_pred hcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 443 699999999999999999999999999999999999999888877755544
No 376
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=80.27 E-value=29 Score=33.13 Aligned_cols=146 Identities=19% Similarity=0.190 Sum_probs=72.8
Q ss_pred HHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 022892 79 LEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 157 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~G 157 (290)
+.+++.+.|++ |+ ..++.+.+ .++++..+.+.-. .++++.+-..+..|+..-+ |.++.+.+. +.|
T Consensus 91 ~~~~~~~~~~~-----~~-~~~~~~~~~~~~~v~~~~G~p~-~~~i~~l~~~gi~v~~~v~---s~~~A~~a~----~~G 156 (330)
T PF03060_consen 91 VLELCIEEGVP-----FE-EQLDVALEAKPDVVSFGFGLPP-PEVIERLHAAGIKVIPQVT---SVREARKAA----KAG 156 (330)
T ss_dssp HHHHHHHTT-S-----HH-HHHHHHHHS--SEEEEESSSC--HHHHHHHHHTT-EEEEEES---SHHHHHHHH----HTT
T ss_pred HHHHHHHhCcc-----cc-cccccccccceEEEEeecccch-HHHHHHHHHcCCccccccC---CHHHHHHhh----hcC
Confidence 34555666666 22 22333333 4566666665543 3566778888988888665 777776554 345
Q ss_pred CCcEEEEeecCCCCCCCCCCC--chhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCC
Q 022892 158 NPNVMVCERGTMFGYNDLIVD--PRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGV 234 (290)
Q Consensus 158 n~~i~L~~~gs~~~y~~~~~d--L~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA 234 (290)
.+.++++-.-.=+..-..+. +.-++.+++ ..+||+.= |+-..| .. ..+|.++||
T Consensus 157 -~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaA----------------GGI~dg-----~~-iaaal~lGA 213 (330)
T PF03060_consen 157 -ADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAA----------------GGIADG-----RG-IAAALALGA 213 (330)
T ss_dssp --SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEE----------------SS--SH-----HH-HHHHHHCT-
T ss_pred -CCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEe----------------cCcCCH-----HH-HHHHHHcCC
Confidence 46666662111011111122 344555666 78999871 111112 23 347799999
Q ss_pred CEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHH
Q 022892 235 DGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEE 267 (290)
Q Consensus 235 ~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ 267 (290)
+|+.+=+-|-.-+ -|-.++.+++.+-+
T Consensus 214 ~gV~~GTrFl~t~------Es~~~~~~K~~l~~ 240 (330)
T PF03060_consen 214 DGVQMGTRFLATE------ESGASDAYKQALVD 240 (330)
T ss_dssp SEEEESHHHHTST------TS-S-HHHHHHHHH
T ss_pred CEeecCCeEEecc------cccChHHHHHHHHh
Confidence 9999988874322 23334466665544
No 377
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=80.24 E-value=34 Score=30.48 Aligned_cols=53 Identities=17% Similarity=0.080 Sum_probs=36.6
Q ss_pred cceecccCCc------cCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 107 ADIIQIPAFL------CRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 107 ~d~~kIgs~~------~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
++++-+-+.+ -.|+++++++.+ .+.||+.+-|.. +++++..++. ..|..-+++
T Consensus 167 ~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~-s~~di~~~l~---~~gadgV~v 226 (232)
T TIGR03572 167 AGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAG-SLDDLVEVAL---EAGASAVAA 226 (232)
T ss_pred CCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHH---HcCCCEEEE
Confidence 5555554422 256889888764 589999999999 9999887543 345554544
No 378
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=80.21 E-value=9.6 Score=37.59 Aligned_cols=151 Identities=17% Similarity=0.131 Sum_probs=87.7
Q ss_pred hhHHhhhc-CCCCeEEEEccCCccCHHHHHHHHHHHHHHHHH---------cCCCEEeccccccCCCCCcccCCCCChhH
Q 022892 5 TALFNQLK-AAEPFFLLAGPNVIESEEHIMRMAKHIKSISTK---------VGLPLVFKSSFDKANRTSSKSFRGPGMVE 74 (290)
Q Consensus 5 ~~~~~~i~-~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~---------~G~~~V~~~~~~k~~rts~~~~~g~~~~~ 74 (290)
|.||+-=+ .-+|+.+-.++|-..+.+..-...+++.++..+ .|+|.|....-..+| .++
T Consensus 17 tVLfrhE~tf~Npp~iAieV~D~~~e~~~~~~~~~~~~v~~dwak~rVge~~~~D~Ialr~~S~DP-----------ae~ 85 (386)
T PF03599_consen 17 TVLFRHEKTFPNPPVIAIEVSDTMPEEEIEAKVERIKDVQFDWAKKRVGEFLGADMIALRLESGDP-----------AEE 85 (386)
T ss_dssp SSSSTTCS--SS--EEEEEEESSS-HCHHHHHHHHHTTTCCEHHHHCCCEEEE-SEEEEE-GGGST-----------HHH
T ss_pred ceeecCCcCCCCCCeEEEEEeCCCChhhHHHHHHHHhhhhhhhhhhhhhhhccccEEEEEecCCCh-----------HHH
Confidence 44555433 345666666777654444444455555433221 234444332111101 134
Q ss_pred HHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcc--eecccCCccCCHHHHHHHH-hcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 75 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVAD--IIQIPAFLCRQTDLLVAAA-KTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 75 ~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d--~~kIgs~~~~n~~lL~~~a-~~~~PVilstG~~~tl~e~~~Ave 151 (290)
-.+..+++++..++|.+---+|++.+....+.+. -.-|++.+-.|+.=+-++| ..+.||+++... ++++..+-..
T Consensus 86 fa~~vk~V~~a~~~PLIL~~~D~evl~aale~~~~~kpLL~aAt~eNyk~m~~lA~~y~~pl~v~sp~--Dln~lk~Ln~ 163 (386)
T PF03599_consen 86 FAKAVKKVAEAVDVPLILCGCDPEVLKAALEACAGKKPLLYAATEENYKAMAALAKEYGHPLIVSSPI--DLNLLKQLNI 163 (386)
T ss_dssp HHHHHHHHHHC-SSEEEEESSHHHHHHHHHHHTTTS--EEEEEBTTTHHHHHHHHHHCT-EEEEE-SS--CHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHhCcCCcEEeEcCHHHHHHHHHHHHHcCCeEEEEecc--cHHHHHHHHH
Confidence 5566788888899999998889988888777433 4457777778987555555 568899998764 5999999999
Q ss_pred HHHHcCCCcEEEEeecCC
Q 022892 152 KVRLAGNPNVMVCERGTM 169 (290)
Q Consensus 152 ~i~~~Gn~~i~L~~~gs~ 169 (290)
.+...|..+|+ +.-|+.
T Consensus 164 ~l~~~Gv~dIV-lDpgt~ 180 (386)
T PF03599_consen 164 KLTELGVKDIV-LDPGTR 180 (386)
T ss_dssp HHHTTT-GGEE-EE---S
T ss_pred HHHhcCcccEE-ecCCcc
Confidence 99999987755 455553
No 379
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=80.16 E-value=41 Score=31.85 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=51.2
Q ss_pred cceecccCCccCCHHHHHH----HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhH
Q 022892 107 ADIIQIPAFLCRQTDLLVA----AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 182 (290)
Q Consensus 107 ~d~~kIgs~~~~n~~lL~~----~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i 182 (290)
-.=|.||++++.|.+.+++ +-..+.||||..+.. ++. +. ++.. + ...+
T Consensus 15 ~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~-~~~--------------------~~----~~~~--~-~~~~ 66 (286)
T PRK12738 15 ANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPG-TFK--------------------HI----ALEE--I-YALC 66 (286)
T ss_pred HCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcc-hhh--------------------hC----CHHH--H-HHHH
Confidence 4456778888888765544 345677777775543 111 00 0100 0 1223
Q ss_pred HHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 183 EWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 183 ~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
..+.+ +.+||.+--||+. . ......|+.+|...+|+-
T Consensus 67 ~~~a~~~~VPValHLDHg~----------------~-----~e~i~~ai~~GFtSVM~D 104 (286)
T PRK12738 67 SAYSTTYNMPLALHLDHHE----------------S-----LDDIRRKVHAGVRSAMID 104 (286)
T ss_pred HHHHHHCCCCEEEECCCCC----------------C-----HHHHHHHHHcCCCeEeec
Confidence 33444 7899999888873 2 566777889999888775
No 380
>PRK06498 isocitrate lyase; Provisional
Probab=80.12 E-value=7.8 Score=39.37 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=50.5
Q ss_pred CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC-CCCCC-CCCCCCCChHHHHHHHHH
Q 022892 190 CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD-PLNAP-VDGPTQWPLRNLEELLEE 267 (290)
Q Consensus 190 ~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t-~dka~-~D~~~sl~p~~l~~lv~~ 267 (290)
+||+.|.|-+- |...-+..+.+.-+.+||.|+.||-... |.|-- -+++.-++.+++-.=++.
T Consensus 179 iPIIADaDtGf----------------G~~~nv~r~vk~~ieAGAAgIhIEDQv~~~KkCGHl~GK~lVp~ee~i~KI~A 242 (531)
T PRK06498 179 VPIIADIDAGF----------------GNEEATYLLAKKMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHEDFLAKIRA 242 (531)
T ss_pred cceEEEcCCCC----------------CcHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCCCCEeccHHHHHHHHHH
Confidence 69999998763 3333345556667789999999998865 34432 267777777777766666
Q ss_pred HHHHHHHhCCc
Q 022892 268 LVAIAKVSKGK 278 (290)
Q Consensus 268 ir~~~~~lg~~ 278 (290)
.|.....+|..
T Consensus 243 Ar~A~d~~G~~ 253 (531)
T PRK06498 243 VRYAFLELGVD 253 (531)
T ss_pred HHHHHHhcCCC
Confidence 66666666653
No 381
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=80.10 E-value=22 Score=31.00 Aligned_cols=70 Identities=13% Similarity=0.040 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhc--CCeEEEeCCCCCCHHHHHH
Q 022892 77 KILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKT--GKIINIKKGQFCASSVMVN 148 (290)
Q Consensus 77 ~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~--~~PVilstG~~~tl~e~~~ 148 (290)
..+.+++++.|++++-.+.+++++....+ .+|++++-.....-..+++.+.+. +.|++-.-|. +++++..
T Consensus 87 ~~~~~~~~~~~~~~i~gv~t~~e~~~A~~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p~~a~GGI--~~~n~~~ 159 (190)
T cd00452 87 PEVVKAANRAGIPLLPGVATPTEIMQALELGADIVKLFPAEAVGPAYIKALKGPFPQVRFMPTGGV--SLDNAAE 159 (190)
T ss_pred HHHHHHHHHcCCcEECCcCCHHHHHHHHHCCCCEEEEcCCcccCHHHHHHHHhhCCCCeEEEeCCC--CHHHHHH
Confidence 35777888899999999999999877766 699999865444556777777543 4777777775 4665544
No 382
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=80.04 E-value=15 Score=37.71 Aligned_cols=105 Identities=12% Similarity=0.075 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecCCC----CCCC---CCCC--chhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccC
Q 022892 145 VMVNSAEKVRLAGNPNVMVCERGTMF----GYND---LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVAS 215 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~gs~~----~y~~---~~~d--L~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~ 215 (290)
+....++.+...|.+.+++.-.+|.. .+.. +.++ ...+...|+.++.|.+++.|.. .++
T Consensus 82 ~~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~------------D~~ 149 (526)
T TIGR00977 82 EEDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFF------------DGY 149 (526)
T ss_pred chHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeee------------ecc
Confidence 44556666777788888887776521 1111 1111 1234444556778888777752 011
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 216 GGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 216 ~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
.-.++++..++.++..+||+-+.| +|---.+.|.++.++++.+++.
T Consensus 150 r~~~~~l~~~~~~a~~aGad~i~i----------~DTvG~~~P~~v~~li~~l~~~ 195 (526)
T TIGR00977 150 KANPEYALATLATAQQAGADWLVL----------CDTNGGTLPHEISEITTKVKRS 195 (526)
T ss_pred cCCHHHHHHHHHHHHhCCCCeEEE----------ecCCCCcCHHHHHHHHHHHHHh
Confidence 123577888899999999984322 6888899999999999998753
No 383
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=79.87 E-value=46 Score=30.04 Aligned_cols=108 Identities=11% Similarity=0.002 Sum_probs=63.6
Q ss_pred hcceecccCCccCCH-HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCC---CCCchh
Q 022892 106 VADIIQIPAFLCRQT-DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDL---IVDPRN 181 (290)
Q Consensus 106 ~~d~~kIgs~~~~n~-~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~---~~dL~~ 181 (290)
.+|++-+=...+.+. .+|+.+-+.|+-.++.-...-.++.+..-++. -+.+|+-. ..+++.-. ...+..
T Consensus 81 gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~------~D~vlvMt-V~PGfgGq~fi~~~lek 153 (220)
T PRK08883 81 GASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDK------VDLILLMS-VNPGFGGQSFIPHTLDK 153 (220)
T ss_pred CCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHh------CCeEEEEE-ecCCCCCceecHhHHHH
Confidence 588888887766665 56777888888777777777234444433322 23444433 23333221 123445
Q ss_pred HHHHHh-c-----CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 182 LEWMRE-A-----NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 182 i~~lk~-~-----~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
+..+++ . ++||.+|..= . ..-....+..||+++++=+-+
T Consensus 154 I~~l~~~~~~~~~~~~I~vdGGI------------------~-----~eni~~l~~aGAd~vVvGSaI 198 (220)
T PRK08883 154 LRAVRKMIDESGRDIRLEIDGGV------------------K-----VDNIREIAEAGADMFVAGSAI 198 (220)
T ss_pred HHHHHHHHHhcCCCeeEEEECCC------------------C-----HHHHHHHHHcCCCEEEEeHHH
Confidence 555555 2 3778775221 1 344556788999999998775
No 384
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=79.86 E-value=78 Score=33.16 Aligned_cols=137 Identities=18% Similarity=0.185 Sum_probs=85.3
Q ss_pred hcCCCCeEEEEccCCcc--CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh---
Q 022892 11 LKAAEPFFLLAGPNVIE--SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA--- 85 (290)
Q Consensus 11 i~~~~~~~iIAgpcsie--n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~--- 85 (290)
||-++| ..|--.+..+ |.+..++..++|.+ +|+++|+...-. .+.-+.|++.+++
T Consensus 21 iGg~~P-I~vQSMt~t~T~D~~atv~Qi~~l~~----aGceiVRvtv~~---------------~~~a~~l~~I~~~l~~ 80 (611)
T PRK02048 21 LGGPNP-IRIQSMTNTSTMDTEACVAQAKRIID----AGGEYVRLTTQG---------------VREAENLMNINIGLRS 80 (611)
T ss_pred ECCCCc-eEEEecCCCCcccHHHHHHHHHHHHH----cCCCEEEEcCCC---------------HHHHHhHHHHHHHHhh
Confidence 344444 4454444432 45677777888777 599999875322 2334444444444
Q ss_pred --cCCcEEEeec-CcccHHHHhhhcceecccCCccCC--------------------------HHHHHHHHhcCCeEEEe
Q 022892 86 --YDIPIVTDVH-ETVQCEEVGKVADIIQIPAFLCRQ--------------------------TDLLVAAAKTGKIINIK 136 (290)
Q Consensus 86 --~Gi~~~s~~~-d~~~~~~l~~~~d~~kIgs~~~~n--------------------------~~lL~~~a~~~~PVils 136 (290)
..+|+++++| |+..+....+.++-+-|-.+++-+ .++++.+-..++||=+=
T Consensus 81 ~G~~iPLVADIHF~~~~A~~a~~~v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIG 160 (611)
T PRK02048 81 QGYMVPLVADVHFNPKVADVAAQYAEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIG 160 (611)
T ss_pred cCCCCCEEEecCCCcHHHHHHHHhhCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEe
Confidence 3689999885 555554455679999888888844 24667777789998776
Q ss_pred CCCCCCHH------------HH-HHH---HHHHHHcCCCcEEEEeecC
Q 022892 137 KGQFCASS------------VM-VNS---AEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 137 tG~~~tl~------------e~-~~A---ve~i~~~Gn~~i~L~~~gs 168 (290)
++.. |++ -| +.| ++++.+.|-.++++---.|
T Consensus 161 vN~G-SL~~~i~~~yg~tpe~mVeSAle~~~i~e~~~f~diviS~KsS 207 (611)
T PRK02048 161 VNHG-SLSDRIMSRYGDTPEGMVESCMEFLRICVEEHFTDVVISIKAS 207 (611)
T ss_pred cCCc-CchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeC
Confidence 6654 443 22 222 3456677777777765554
No 385
>PRK08392 hypothetical protein; Provisional
Probab=79.82 E-value=43 Score=29.68 Aligned_cols=147 Identities=12% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh------cCCcEEEeecCcccHHHHhhhccee
Q 022892 37 KHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA------YDIPIVTDVHETVQCEEVGKVADII 110 (290)
Q Consensus 37 k~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~------~Gi~~~s~~~d~~~~~~l~~~~d~~ 110 (290)
+.+++.|.+.|++.+-+.--. |+..+..+ ...+.++.+..++ .|+.+-..+-..+..+.+.+.+|++
T Consensus 17 ~e~v~~A~~~Gl~~i~iTdH~--~~~~~~~~-----~~y~~~i~~l~~~~~i~il~GiE~~~~~~~~~~~~~~~~~~D~v 89 (215)
T PRK08392 17 RDNIAEAERKGLRLVGISDHI--HYFTPSKF-----NAYINEIRQWGEESEIVVLAGIEANITPNGVDITDDFAKKLDYV 89 (215)
T ss_pred HHHHHHHHHcCCCEEEEccCC--CccchhhH-----HHHHHHHHHHhhccCceEEEeEEeeecCCcchhHHHHHhhCCEE
Q ss_pred cccCCc--------cCCHHHHHHHHhcCCeEEEeCCC-------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCC
Q 022892 111 QIPAFL--------CRQTDLLVAAAKTGKIINIKKGQ-------FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDL 175 (290)
Q Consensus 111 kIgs~~--------~~n~~lL~~~a~~~~PVilstG~-------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~ 175 (290)
|||-- -..++.+..+...+.+-+|---. ....+.+.+.++.+.+.| +.++..++++||
T Consensus 90 -I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g----~~lEiNt~~~~p-- 162 (215)
T PRK08392 90 -IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG----KAFEISSRYRVP-- 162 (215)
T ss_pred -EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC----CEEEEeCCCCCC--
Q ss_pred CCCchhHHHHHhcCCCEEEeCC-CC
Q 022892 176 IVDPRNLEWMREANCPVVADVT-HS 199 (290)
Q Consensus 176 ~~dL~~i~~lk~~~~pV~~D~s-Hs 199 (290)
+..-+...++.|+||.+.|| |.
T Consensus 163 --~~~~l~~~~~~G~~~~igSDAH~ 185 (215)
T PRK08392 163 --DLEFIRECIKRGIKLTFASDAHR 185 (215)
T ss_pred --CHHHHHHHHHcCCEEEEeCCCCC
No 386
>PLN02979 glycolate oxidase
Probab=79.57 E-value=25 Score=34.46 Aligned_cols=44 Identities=18% Similarity=0.102 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCcEEE-eecCcccHHHHhh-hcceecccCCccCC
Q 022892 76 LKILEKVKIAYDIPIVT-DVHETVQCEEVGK-VADIIQIPAFLCRQ 119 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s-~~~d~~~~~~l~~-~~d~~kIgs~~~~n 119 (290)
|+.++.+.+..++|++. .+.+.+++..+.+ .+|.+.|+...-+|
T Consensus 212 W~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrq 257 (366)
T PLN02979 212 WKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQ 257 (366)
T ss_pred HHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCC
Confidence 45566666778999888 8999999988888 69998887665554
No 387
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=79.14 E-value=62 Score=31.10 Aligned_cols=78 Identities=19% Similarity=0.116 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeecCCCC-----CCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCcc
Q 022892 141 CASSVMVNSAEKVRLAGNPNVMVCERGTMFG-----YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVA 214 (290)
Q Consensus 141 ~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~-----y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~ 214 (290)
.+++|....++.+...|-+-|.+ +.|+.++ |+. .++.....+|+ .++||+....-.
T Consensus 224 ~~~~e~~~i~~~l~~~gvD~i~v-s~g~~~~~~~~~~~~--~~~~~~~~ik~~~~ipVi~~G~i~--------------- 285 (337)
T PRK13523 224 LTVQDYVQYAKWMKEQGVDLIDV-SSGAVVPARIDVYPG--YQVPFAEHIREHANIATGAVGLIT--------------- 285 (337)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEe-CCCCCCCCCCCCCcc--ccHHHHHHHHhhcCCcEEEeCCCC---------------
Confidence 36899999999898888654444 5554211 221 23445566777 789998733321
Q ss_pred CCCCcccHHHHHHHHHHcC-CCEEEEeeeC
Q 022892 215 SGGLRELIPCIARTAIAVG-VDGVFMEVHD 243 (290)
Q Consensus 215 ~~g~~~~~~~~a~aAva~G-A~G~~IEkH~ 243 (290)
. +..+..+++.| +|.+++=+-+
T Consensus 286 --~-----~~~a~~~l~~g~~D~V~~gR~~ 308 (337)
T PRK13523 286 --S-----GAQAEEILQNNRADLIFIGREL 308 (337)
T ss_pred --C-----HHHHHHHHHcCCCChHHhhHHH
Confidence 1 55677788877 8876665554
No 388
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=79.07 E-value=30 Score=31.07 Aligned_cols=45 Identities=16% Similarity=0.086 Sum_probs=33.8
Q ss_pred hcceecccCC------ccCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 106 VADIIQIPAF------LCRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 106 ~~d~~kIgs~------~~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
.++++-+... .-.|+++++++.+ ++.||+.+-|.. +++++..+.+
T Consensus 162 G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~-~~~di~~~l~ 213 (243)
T cd04731 162 GAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAG-KPEHFVEAFE 213 (243)
T ss_pred CCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCC-CHHHHHHHHH
Confidence 4776655333 3357888888764 589999999999 9999887654
No 389
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=79.06 E-value=51 Score=30.07 Aligned_cols=201 Identities=11% Similarity=-0.006 Sum_probs=110.4
Q ss_pred hcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEE--eccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCC
Q 022892 11 LKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLV--FKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDI 88 (290)
Q Consensus 11 i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V--~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi 88 (290)
||.+.| .|++-.. ..|.+..+..++++.. .|+|+| +..+|. ... ...+..+.+..++.++
T Consensus 16 ~g~~~p-~Icvpi~-~~~~ee~~~~~~~~~~----~~aDivE~RlD~l~-----------~~~-~~~~~~~~~~l~~~~~ 77 (229)
T PRK01261 16 IGNMQP-IVVESIF-FKDIKEMKERFKTKVL----SDKNLYEIRFDLFH-----------DHS-IESEPEIISALNEMDI 77 (229)
T ss_pred eCCCCc-EEEEEeC-CCCHHHHHHHHHHhhc----CCCCEEEEEeeccC-----------CCC-hHHHHHHHHHHhhcCC
Confidence 344444 4444443 4588888877777765 589985 334343 111 2334444455555699
Q ss_pred cEEEeecCcccHHHHhhh----cceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE
Q 022892 89 PIVTDVHETVQCEEVGKV----ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC 164 (290)
Q Consensus 89 ~~~s~~~d~~~~~~l~~~----~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~ 164 (290)
|++.|.-..+..+.+... +|++=|=-..... + + .-..+..||+|..+. +.+|+.+.++...+.|.+ |+=+
T Consensus 78 p~I~T~R~~~~~~~l~~a~~~~~d~vDIEl~~~~~--~-~-~~~~~~kvIvS~Htp-~~eeL~~~l~~m~~~gaD-I~Ki 151 (229)
T PRK01261 78 DYIFTYRGVDARKYYETAIDKMPPAVDLDINLIGK--L-E-FRPRNTMLMVSYHTN-NSDNMPAILDIMNEKNPD-YVKV 151 (229)
T ss_pred CEEEEEcCCCHHHHHHHHHhhCCCEEEEEcccchh--h-h-hhcCCCeEEEEeCCC-CHHHHHHHHHHHHHhCCC-EEEE
Confidence 999999987665554432 3333332111111 2 2 235688999999987 999999999988887743 2222
Q ss_pred eecCCCCCCCCC--CCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH-HHcCCCEEEEe
Q 022892 165 ERGTMFGYNDLI--VDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA-IAVGVDGVFME 240 (290)
Q Consensus 165 ~~gs~~~y~~~~--~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aA-va~GA~G~~IE 240 (290)
-. . +-...+ -+|..+-..++ .+.|++. =++ |. .++|.+ -..|-. +
T Consensus 152 Av--m-p~~~~Dvl~~l~~~~~~~~~~~~p~i~---isM----------------G~-----~iSRi~~~~fGS~---l- 200 (229)
T PRK01261 152 AC--N-YNDNKKFVDDLQYILMKKDEKYKPIVF---IPM----------------GR-----EFLRIFSGYYVSD---I- 200 (229)
T ss_pred Ee--C-CCChHHHHHHHHHHHHHHhcCCCCEEE---EEC----------------Cc-----HHHHHHHHHHCCc---e-
Confidence 22 1 111111 12223333333 4567654 112 52 345533 345653 2
Q ss_pred eeCCCCCCCCCCCCCCChHHHHHHHHHH
Q 022892 241 VHDDPLNAPVDGPTQWPLRNLEELLEEL 268 (290)
Q Consensus 241 kH~t~dka~~D~~~sl~p~~l~~lv~~i 268 (290)
..-..++ +-.+-+++.++++++++.+
T Consensus 201 Tyas~~~--~sAPGQi~v~~l~~~~~~~ 226 (229)
T PRK01261 201 VYARYDN--ETAPGQPKRDYYESAFIKY 226 (229)
T ss_pred EEeeCCC--CCCCCCCCHHHHHHHHHHh
Confidence 3333333 2467788888888877653
No 390
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=78.89 E-value=79 Score=32.12 Aligned_cols=99 Identities=11% Similarity=0.039 Sum_probs=61.5
Q ss_pred HHHHHHhcCCeEEEeCCCC--CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c----CCCEEE
Q 022892 122 LLVAAAKTGKIINIKKGQF--CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A----NCPVVA 194 (290)
Q Consensus 122 lL~~~a~~~~PVilstG~~--~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~----~~pV~~ 194 (290)
.++.+-..+.-|.++---+ .+++.+.+.++.+...|-..|.||..... -.|.. + ..-+..+++ + ++|+++
T Consensus 122 ~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~-~~P~~-~-~~~i~~l~~~~~~~~~v~l~~ 198 (494)
T TIGR00973 122 MVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINIPDTVGY-ALPAE-Y-GNLIKGLRENVPNIDKAILSV 198 (494)
T ss_pred HHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC-CCHHH-H-HHHHHHHHHhhccccCceEEE
Confidence 3445555677777765422 26777777778788888877777766543 12321 2 134566665 4 366888
Q ss_pred eCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 195 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 195 D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+.|-. +.+...-+.+|+.+||+ .||.-+.
T Consensus 199 -H~HND------------------~GlAvANalaAv~aGa~--~vd~tv~ 227 (494)
T TIGR00973 199 -HCHND------------------LGLAVANSLAAVQNGAR--QVECTIN 227 (494)
T ss_pred -EeCCC------------------CChHHHHHHHHHHhCCC--EEEEEee
Confidence 66642 22335557789999998 7776554
No 391
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=78.83 E-value=35 Score=30.26 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=31.3
Q ss_pred CCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 118 RQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 118 ~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
.|.++++++.+ .+.||+..-|.. +++++..+. ..|-..+++
T Consensus 176 ~~~~~i~~i~~~~~ipvia~GGi~-~~~di~~~~----~~Gadgv~i 217 (230)
T TIGR00007 176 PNFELTKELVKAVNVPVIASGGVS-SIDDLIALK----KLGVYGVIV 217 (230)
T ss_pred CCHHHHHHHHHhCCCCEEEeCCCC-CHHHHHHHH----HCCCCEEEE
Confidence 56788888765 688999999999 999998754 356655444
No 392
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=78.71 E-value=8.6 Score=33.98 Aligned_cols=102 Identities=10% Similarity=-0.012 Sum_probs=57.6
Q ss_pred HHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE----eecCcccHHHHh----h-hcceec
Q 022892 41 SISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT----DVHETVQCEEVG----K-VADIIQ 111 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s----~~~d~~~~~~l~----~-~~d~~k 111 (290)
+.|.+.|++.|-...+.- +.....|+. ..+.+..+.+.|. |+++.. ..++.+.+..+. + .+||+|
T Consensus 76 e~A~~~GAdevdvv~~~g--~~~~~~~~~--~~~ei~~v~~~~~--g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IK 149 (203)
T cd00959 76 REAIADGADEIDMVINIG--ALKSGDYEA--VYEEIAAVVEACG--GAPLKVILETGLLTDEEIIKACEIAIEAGADFIK 149 (203)
T ss_pred HHHHHcCCCEEEEeecHH--HHhCCCHHH--HHHHHHHHHHhcC--CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 345567999877654431 000000110 1244555555554 666532 223333333332 3 499999
Q ss_pred ccCCcc------CCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 022892 112 IPAFLC------RQTDLLVAAAKTGKIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 112 Igs~~~------~n~~lL~~~a~~~~PVilstG~~~tl~e~~~A 149 (290)
.+++-. .+..+++++.+.+.||.++=|.- |.++.+.-
T Consensus 150 TsTG~~~~~at~~~v~~~~~~~~~~v~ik~aGGik-t~~~~l~~ 192 (203)
T cd00959 150 TSTGFGPGGATVEDVKLMKEAVGGRVGVKAAGGIR-TLEDALAM 192 (203)
T ss_pred cCCCCCCCCCCHHHHHHHHHHhCCCceEEEeCCCC-CHHHHHHH
Confidence 997765 56567777766778999998887 77665543
No 393
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=78.65 E-value=74 Score=33.95 Aligned_cols=124 Identities=18% Similarity=0.183 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHH--HhcCCcEEEeec-CcccHHHHh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVK--IAYDIPIVTDVH-ETVQCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~--~~~Gi~~~s~~~-d~~~~~~l~ 104 (290)
|.+...+.+++|.+ +|+++|+...-. ..-.+.++.+++-. ....+|+++++| ++..+....
T Consensus 108 D~eatv~Qi~~l~~----aGceiVRvtv~~------------~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~ 171 (733)
T PLN02925 108 DVEATVDQVMRIAD----KGADIVRITVQG------------KKEADACFEIKNTLVQKGYNIPLVADIHFAPSVALRVA 171 (733)
T ss_pred cHHHHHHHHHHHHH----cCCCEEEEcCCC------------HHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHHHHH
Confidence 46677888888877 599999875322 11123455555433 236799999885 455444455
Q ss_pred hhcceecccCCccCCH--------------------------HHHHHHHhcCCeEEEeCCCCCCHH------------HH
Q 022892 105 KVADIIQIPAFLCRQT--------------------------DLLVAAAKTGKIINIKKGQFCASS------------VM 146 (290)
Q Consensus 105 ~~~d~~kIgs~~~~n~--------------------------~lL~~~a~~~~PVilstG~~~tl~------------e~ 146 (290)
+.++-+-|-.+++-.. ++++.+-..++||=+=++-. |++ -|
T Consensus 172 ~~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~G-SLs~ri~~~yGdtp~gm 250 (733)
T PLN02925 172 ECFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHG-SLSDRIMSYYGDSPRGM 250 (733)
T ss_pred HhcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCc-CchHHHHHHhCCChHHH
Confidence 6799888888877443 47777778899987766654 442 22
Q ss_pred -HHH---HHHHHHcCCCcEEEEeecC
Q 022892 147 -VNS---AEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 147 -~~A---ve~i~~~Gn~~i~L~~~gs 168 (290)
+.| ++++.+.|-.++++---.|
T Consensus 251 VeSAle~~~i~e~~~f~diviS~KsS 276 (733)
T PLN02925 251 VESAFEFARICRKLDYHNFVFSMKAS 276 (733)
T ss_pred HHHHHHHHHHHHHCCCCcEEEEEEcC
Confidence 222 3456677777777765554
No 394
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=78.58 E-value=77 Score=35.73 Aligned_cols=130 Identities=19% Similarity=0.168 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHH-HHHHHHhcCCe---EEEeCC-------CCCC
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTD-LLVAAAKTGKI---INIKKG-------QFCA 142 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~-lL~~~a~~~~P---VilstG-------~~~t 142 (290)
+-.+...+.+.+.||.++--+-...++ .|.. -++++-+.|+- -|.=|| .-.+
T Consensus 625 ~vv~~f~~~~~~~GidifrifD~lN~~-----------------~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~ 687 (1143)
T TIGR01235 625 NVVKYFVKQAAQGGIDIFRVFDSLNWV-----------------ENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYD 687 (1143)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcCH-----------------HHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCC
Confidence 445566667777777776543222222 3332 23444445552 233333 1227
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCccc
Q 022892 143 SSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLREL 221 (290)
Q Consensus 143 l~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~ 221 (290)
++-+.+.++.+...|-+.|.|..-...- .|. .+ ..-+..||+ +++||.+ ++|.. .| +
T Consensus 688 l~y~~~~ak~l~~~Gad~I~ikDt~Gll-~P~-~~-~~Lv~~lk~~~~~pi~~-H~Hdt---------------~G---l 745 (1143)
T TIGR01235 688 LKYYTNLAVELEKAGAHILGIKDMAGLL-KPA-AA-KLLIKALREKTDLPIHF-HTHDT---------------SG---I 745 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCc-CHH-HH-HHHHHHHHHhcCCeEEE-EECCC---------------CC---c
Confidence 8888888888888998877777665431 111 11 245666777 8999999 88874 13 2
Q ss_pred HHHHHHHHHHcCCCEEEEeeeCC
Q 022892 222 IPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 222 ~~~~a~aAva~GA~G~~IEkH~t 244 (290)
......+|+.+||+ +|..-..
T Consensus 746 a~an~laA~eaGad--~vD~ai~ 766 (1143)
T TIGR01235 746 AVASMLAAVEAGVD--VVDVAVD 766 (1143)
T ss_pred HHHHHHHHHHhCCC--EEEecch
Confidence 24556788999998 7776553
No 395
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=78.48 E-value=15 Score=34.12 Aligned_cols=86 Identities=12% Similarity=0.040 Sum_probs=48.0
Q ss_pred EEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHH-HHHHHHHhcCCcEEE-----
Q 022892 19 LLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLK-ILEKVKIAYDIPIVT----- 92 (290)
Q Consensus 19 iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~-~L~~~~~~~Gi~~~s----- 92 (290)
||+|.++. |...++++|+.. +++|+|+|+.. .|+.|.... ++++. ..+++++ ++|++-
T Consensus 68 vi~gvg~~-~~~~ai~~a~~a----~~~Gad~v~v~--------~P~y~~~~~-~~~i~~yf~~v~~--~lpv~iYn~P~ 131 (279)
T cd00953 68 VIFQVGSL-NLEESIELARAA----KSFGIYAIASL--------PPYYFPGIP-EEWLIKYFTDISS--PYPTFIYNYPK 131 (279)
T ss_pred EEEEeCcC-CHHHHHHHHHHH----HHcCCCEEEEe--------CCcCCCCCC-HHHHHHHHHHHHh--cCCEEEEeCcc
Confidence 78888863 555556655554 55799998753 122222222 45554 4556666 788773
Q ss_pred ---eecCcccHHHHhh---hcceecccCCccCCH
Q 022892 93 ---DVHETVQCEEVGK---VADIIQIPAFLCRQT 120 (290)
Q Consensus 93 ---~~~d~~~~~~l~~---~~d~~kIgs~~~~n~ 120 (290)
..++++.+..|.+ .+-.+|-++.++.+.
T Consensus 132 ~tg~~l~~~~l~~L~~~~p~vvgiK~s~~d~~~~ 165 (279)
T cd00953 132 ATGYDINARMAKEIKKAGGDIIGVKDTNEDISHM 165 (279)
T ss_pred ccCCCCCHHHHHHHHhcCCCEEEEEeCccCHHHH
Confidence 1244445555542 345666666665443
No 396
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=78.39 E-value=31 Score=32.19 Aligned_cols=116 Identities=12% Similarity=0.056 Sum_probs=60.3
Q ss_pred HcCCCEEeccccccCCCC-----CcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcc--cHHHHhh-hcceecccCCc
Q 022892 45 KVGLPLVFKSSFDKANRT-----SSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETV--QCEEVGK-VADIIQIPAFL 116 (290)
Q Consensus 45 ~~G~~~V~~~~~~k~~rt-----s~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~--~~~~l~~-~~d~~kIgs~~ 116 (290)
++|+++|...- |.. |+..|+.+. ...++.+.+..++.|.+++-=..... .++.+.+ .++.+.+....
T Consensus 179 ~~G~d~i~i~d----~~~~~~~isp~~f~e~~-~p~~k~i~~~i~~~g~~~~lH~cG~~~~~~~~l~~~~~d~~~~d~~~ 253 (330)
T cd03465 179 EAGADGIYISD----PWASSSILSPEDFKEFS-LPYLKKVFDAIKALGGPVIHHNCGDTAPILELMADLGADVFSIDVTV 253 (330)
T ss_pred HhCCCEEEEeC----CccccCCCCHHHHHHHh-hHHHHHHHHHHHHcCCceEEEECCCchhHHHHHHHhCCCeEeecccC
Confidence 45898876532 322 333343222 23455566666777887776444433 6777777 47777765553
Q ss_pred cCCHHHHHHHHhcCCeEEEeCC-------CCCCHHHHHHHHHHHHHcC-C--CcEEE-EeecCC
Q 022892 117 CRQTDLLVAAAKTGKIINIKKG-------QFCASSVMVNSAEKVRLAG-N--PNVMV-CERGTM 169 (290)
Q Consensus 117 ~~n~~lL~~~a~~~~PVilstG-------~~~tl~e~~~Ave~i~~~G-n--~~i~L-~~~gs~ 169 (290)
+..-+++ ..+.-+.+--| ..+|.+|+.+.++.+.+.+ . ...+| .-|+..
T Consensus 254 --dl~~~~~--~~g~~~~i~G~id~~~~l~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~ 313 (330)
T cd03465 254 --DLAEAKK--KVGDKACLMGNLDPIDVLLNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIP 313 (330)
T ss_pred --CHHHHHH--HhCCceEEEeCcChHHhhcCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCC
Confidence 4332222 22321211111 1247888988887766542 2 23333 446553
No 397
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=78.33 E-value=11 Score=34.97 Aligned_cols=67 Identities=31% Similarity=0.435 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHH
Q 022892 149 SAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIAR 227 (290)
Q Consensus 149 Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~ 227 (290)
.+..+...|. -+++-=|+--+...-..|...+..+++ +++||++|.-=+. +.-+.
T Consensus 136 ~akrL~d~Gc--aavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~----------------------pSdaa 191 (247)
T PF05690_consen 136 LAKRLEDAGC--AAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDAGIGT----------------------PSDAA 191 (247)
T ss_dssp HHHHHHHTT---SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES---S----------------------HHHHH
T ss_pred HHHHHHHCCC--CEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeCCCCC----------------------HHHHH
Q ss_pred HHHHcCCCEEEE
Q 022892 228 TAIAVGVDGVFM 239 (290)
Q Consensus 228 aAva~GA~G~~I 239 (290)
.|..+|+||+++
T Consensus 192 ~AMElG~daVLv 203 (247)
T PF05690_consen 192 QAMELGADAVLV 203 (247)
T ss_dssp HHHHTT-SEEEE
T ss_pred HHHHcCCceeeh
No 398
>PLN03231 putative alpha-galactosidase; Provisional
Probab=78.33 E-value=12 Score=36.46 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=39.1
Q ss_pred CCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCC----------CCcc----cC-------CCCC---hhHHHHHH
Q 022892 24 NVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANR----------TSSK----SF-------RGPG---MVEGLKIL 79 (290)
Q Consensus 24 csien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~r----------ts~~----~~-------~g~~---~~~~l~~L 79 (290)
|.| |++.+++.|..+.+=-+++|-+.|--...+-.++ +..+ .+ ..+. -..|++.|
T Consensus 13 ~~i-~E~~i~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~l 91 (357)
T PLN03231 13 FTI-SEEQFLENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPI 91 (357)
T ss_pred cCc-CHHHHHHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHH
Confidence 445 8888999998333334456866655544332221 0111 01 0010 01389999
Q ss_pred HHHHHhcCCcEEE
Q 022892 80 EKVKIAYDIPIVT 92 (290)
Q Consensus 80 ~~~~~~~Gi~~~s 92 (290)
.++.+++||.|--
T Consensus 92 ADyvHs~GLKfGI 104 (357)
T PLN03231 92 AAKVHALGLKLGI 104 (357)
T ss_pred HHHHHhCCcceEE
Confidence 9999999998753
No 399
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=78.28 E-value=19 Score=33.98 Aligned_cols=119 Identities=17% Similarity=0.128 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCCh-h---HHHHHHHHHHHhcCCcEEEeecCcc-----cHH----
Q 022892 35 MAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGM-V---EGLKILEKVKIAYDIPIVTDVHETV-----QCE---- 101 (290)
Q Consensus 35 ~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~-~---~~l~~L~~~~~~~Gi~~~s~~~d~~-----~~~---- 101 (290)
-|+++++. |++++|+=-|+. . ++..+ + .-++.+-..|...+|||+-||.... ..+
T Consensus 116 sa~riK~~----G~~avK~Lvy~~---~-----D~~e~neqk~a~ierigsec~aedi~f~lE~ltyd~~~~d~~eyak~ 183 (306)
T COG3684 116 SAKRIKED----GGDAVKFLVYYR---S-----DEDEINEQKLAYIERIGSECHAEDLPFFLEPLTYDPRIGDKEEYAKR 183 (306)
T ss_pred CHHHHHHh----cccceEEEEEEc---C-----CchHHhHHHHHHHHHHHHHhhhcCCceeEeeeecCCCCCChHHHHhh
Confidence 47888885 999999876652 1 11112 1 2245566778999999999986321 111
Q ss_pred ----------HHhh-hcceecccCCcc---CCHHHH----HHHHhcCCe-EEEeCCCCCCHHHHHHHHHHHHHcCCCcEE
Q 022892 102 ----------EVGK-VADIIQIPAFLC---RQTDLL----VAAAKTGKI-INIKKGQFCASSVMVNSAEKVRLAGNPNVM 162 (290)
Q Consensus 102 ----------~l~~-~~d~~kIgs~~~---~n~~lL----~~~a~~~~P-VilstG~~~tl~e~~~Ave~i~~~Gn~~i~ 162 (290)
.+.+ .+|.+|+.---- .+.+.+ +.-+.+++| |+||.|.+ -.-...++++-...|. .=+
T Consensus 184 kp~kV~~a~k~fsd~GadvlKvevPvyveGe~~ea~~~f~~~~~~~~lP~i~LSAGV~--~klF~~tv~fA~eaGA-sGv 260 (306)
T COG3684 184 KPQKVIEAMKEFSDSGADVLKVEVPVYVEGEQEEAAAAFQRQNDHINLPWIYLSAGVS--AKLFQRTVRFAMEAGA-SGV 260 (306)
T ss_pred chHHHHHHHHHhccCCCceEEeecceeccCccHHHHHHHHHhhcCCCCCeEEEecCcc--HHHhHHHHHHHHHcCC-cee
Confidence 2222 467777642220 122332 223456776 77888866 7778888888777776 567
Q ss_pred EEeecC
Q 022892 163 VCERGT 168 (290)
Q Consensus 163 L~~~gs 168 (290)
||-|-+
T Consensus 261 L~GRAt 266 (306)
T COG3684 261 LAGRAT 266 (306)
T ss_pred Eechhh
Confidence 766654
No 400
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=78.17 E-value=36 Score=33.49 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=60.9
Q ss_pred HHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCC
Q 022892 122 LLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSL 200 (290)
Q Consensus 122 lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~ 200 (290)
-.+.+++.++||+|.+= +++-|+.|.+.+..+ +-.| |....=|+.-+..|.- +++|+++ ++.
T Consensus 151 ave~v~~~~~pv~l~s~---dpevmkaaLev~~dq---kPll--------YaAte~n~~e~~klav~y~vplvl-~a~-- 213 (467)
T COG1456 151 AVEKVAEAGLPVILCSF---DPEVMKAALEVVKDQ---KPLL--------YAATEDNWKEFAKLAVEYKVPLVL-SAF-- 213 (467)
T ss_pred HHHHHHhcCCcEEEEeC---CHHHHHHHHHHhhcc---Ccee--------eecccccHHHHHHHHhhcCCcEEE-ecc--
Confidence 34556778888888763 788888888877643 2222 4443346666666655 7999988 321
Q ss_pred CCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCC
Q 022892 201 QQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 245 (290)
Q Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~ 245 (290)
+.-+.+..+++...++|++-++++-|--|
T Consensus 214 ----------------~dl~~lk~la~~~~~~Gi~divLdPgT~p 242 (467)
T COG1456 214 ----------------NDLDDLKNLAVTYAQAGIKDIVLDPGTYP 242 (467)
T ss_pred ----------------CCHHHHHHHHHHHHHcCCceEEecCCccc
Confidence 22344556777788999999999988655
No 401
>PLN02321 2-isopropylmalate synthase
Probab=78.10 E-value=96 Score=32.68 Aligned_cols=97 Identities=10% Similarity=0.013 Sum_probs=59.0
Q ss_pred HHHHhcCC-eEEEeCC--CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c----CCCEEEe
Q 022892 124 VAAAKTGK-IINIKKG--QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A----NCPVVAD 195 (290)
Q Consensus 124 ~~~a~~~~-PVilstG--~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~----~~pV~~D 195 (290)
+++-..++ -|.++-- .-.+++.+...++.+...|-..|.||..+.. ..|.. + ..-+..+++ + ++++.+
T Consensus 217 ~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~-~~P~~-v-~~li~~l~~~~~~~~~v~i~v- 292 (632)
T PLN02321 217 KYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGY-TLPSE-F-GQLIADIKANTPGIENVIIST- 292 (632)
T ss_pred HHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccC-CCHHH-H-HHHHHHHHHhcCCCCCceEEE-
Confidence 34445566 3777652 2236788888888888889888888776652 12221 1 134556665 4 244666
Q ss_pred CCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 196 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 196 ~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+-|-. +.+...-+.+|+.+||+ .+|.-+.
T Consensus 293 H~HND------------------~GlAvANslaAv~AGA~--~Vd~Tin 321 (632)
T PLN02321 293 HCQND------------------LGLSTANTLAGAHAGAR--QVEVTIN 321 (632)
T ss_pred EeCCC------------------CCHHHHHHHHHHHhCCC--EEEEecc
Confidence 55531 22334557789999998 7887664
No 402
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=78.04 E-value=19 Score=36.66 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcc
Q 022892 142 ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRE 220 (290)
Q Consensus 142 tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~ 220 (290)
.++++.+-++...+.|. +++=+-+++.-+ ....+ ...+..+++ +++||.+|+.+
T Consensus 163 ~l~~i~~~A~~~~~~GA-DIIDIG~~st~p-~~~~v-~~~V~~l~~~~~~pISIDT~~---------------------- 217 (499)
T TIGR00284 163 AEDGIEGLAARMERDGA-DMVALGTGSFDD-DPDVV-KEKVKTALDALDSPVIADTPT---------------------- 217 (499)
T ss_pred chHHHHHHHHHHHHCCC-CEEEECCCcCCC-cHHHH-HHHHHHHHhhCCCcEEEeCCC----------------------
Confidence 45776776777777786 455555555311 11111 245666666 68999999776
Q ss_pred cHHHHHHHHHHcCCC
Q 022892 221 LIPCIARTAIAVGVD 235 (290)
Q Consensus 221 ~~~~~a~aAva~GA~ 235 (290)
+.++.+|+.+||+
T Consensus 218 --~~v~eaAL~aGAd 230 (499)
T TIGR00284 218 --LDELYEALKAGAS 230 (499)
T ss_pred --HHHHHHHHHcCCC
Confidence 4567777878887
No 403
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=77.90 E-value=55 Score=30.15 Aligned_cols=92 Identities=13% Similarity=-0.038 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhcCCcEEEeec--Cccc-HH---HHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCC------C
Q 022892 74 EGLKILEKVKIAYDIPIVTDVH--ETVQ-CE---EVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQ------F 140 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~--d~~~-~~---~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~------~ 140 (290)
.-+.-+.+.+++.|..++.... +.+. .+ .+.+ .+|.+-+-+......+.++.+...+.||++=... .
T Consensus 81 ~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~ 160 (342)
T PRK10014 81 ELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLREMAEEKGIPVVFASRASYLDDVD 160 (342)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHhhcCCCEEEEecCCCCCCCC
Confidence 3345577888999977665333 2221 12 2222 4777766554444567778888889998863211 0
Q ss_pred -C---CHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 141 -C---ASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 141 -~---tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
. +..-...+++++.+.|..+|.++.
T Consensus 161 ~V~~D~~~~~~~a~~~L~~~G~~~I~~i~ 189 (342)
T PRK10014 161 TVRPDNMQAAQLLTEHLIRNGHQRIAWLG 189 (342)
T ss_pred EEEeCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 0 335567788899999988887763
No 404
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=77.89 E-value=22 Score=32.85 Aligned_cols=65 Identities=23% Similarity=0.327 Sum_probs=42.5
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT 92 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s 92 (290)
++++-||+|.+.. +.+.+++.|+...+ +|+|+++... | + |....-++-+++.+++++..++|++-
T Consensus 68 ~~~~~vi~gv~~~-st~~~i~~a~~a~~----~Gad~v~v~~----P----~-~~~~s~~~l~~y~~~ia~~~~~pi~i 132 (289)
T PF00701_consen 68 AGRVPVIAGVGAN-STEEAIELARHAQD----AGADAVLVIP----P----Y-YFKPSQEELIDYFRAIADATDLPIII 132 (289)
T ss_dssp TTSSEEEEEEESS-SHHHHHHHHHHHHH----TT-SEEEEEE----S----T-SSSCCHHHHHHHHHHHHHHSSSEEEE
T ss_pred cCceEEEecCcch-hHHHHHHHHHHHhh----cCceEEEEec----c----c-cccchhhHHHHHHHHHHhhcCCCEEE
Confidence 4567899998753 67777777777555 7999876531 1 2 11222134466788899999999984
No 405
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=77.81 E-value=28 Score=35.21 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEEe-ecCcccHHHHhh-h
Q 022892 30 EHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVTD-VHETVQCEEVGK-V 106 (290)
Q Consensus 30 ~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s~-~~d~~~~~~l~~-~ 106 (290)
+...+.++.|++. |+++|....-. +.. ...+..++++...+ +++++.- +.+.+.+..+.+ .
T Consensus 224 ~~~~~ra~~Lv~a----GVd~i~~D~a~-----------g~~-~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G 287 (475)
T TIGR01303 224 GDVGGKAKALLDA----GVDVLVIDTAH-----------GHQ-VKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAG 287 (475)
T ss_pred ccHHHHHHHHHHh----CCCEEEEeCCC-----------CCc-HHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhC
Confidence 4567888888884 99988765322 111 23344455555554 8999997 889999999988 7
Q ss_pred cceecccCC--ccCC------------HHHH---HHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 107 ADIIQIPAF--LCRQ------------TDLL---VAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 107 ~d~~kIgs~--~~~n------------~~lL---~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
+|+++||-+ .+.+ .+++ +++...+.|||-.=|.. +..++..|+.
T Consensus 288 ~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~-~~~di~kala 348 (475)
T TIGR01303 288 ANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVR-HPRDVALALA 348 (475)
T ss_pred CCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCC-CHHHHHHHHH
Confidence 999996654 2211 1222 22345588888888888 8888887754
No 406
>PLN00191 enolase
Probab=77.57 E-value=19 Score=36.37 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh---cceecccCCc--cCCHHHHHHHHhcC--CeEEEeCCCCCCHHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV---ADIIQIPAFL--CRQTDLLVAAAKTG--KIINIKKGQFCASSV 145 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~---~d~~kIgs~~--~~n~~lL~~~a~~~--~PVilstG~~~tl~e 145 (290)
.+.++.+++++++++|.++=+|+.+++.+-+..+ ..+ .|-..+ ++|...++.+-..+ --|.+|-++.+++.+
T Consensus 298 ~e~i~~~~~L~~~y~I~~IEDPl~~~D~eg~~~Lt~~~~i-pIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITe 376 (457)
T PLN00191 298 DELIDLYKEFVSDYPIVSIEDPFDQDDWEHWAKLTSLEDV-QIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTE 376 (457)
T ss_pred HHHHHHHHHHhhcCCcEEEECCCCcccHHHHHHHHccCCC-cEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHH
Confidence 4667788888999999999999998887766552 333 333333 26666555544332 257777777777777
Q ss_pred HHHHHHHHHHcC
Q 022892 146 MVNSAEKVRLAG 157 (290)
Q Consensus 146 ~~~Ave~i~~~G 157 (290)
..++++..+..|
T Consensus 377 a~~~a~lA~~~G 388 (457)
T PLN00191 377 SIEAVKMSKAAG 388 (457)
T ss_pred HHHHHHHHHHCC
Confidence 777777666554
No 407
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=77.52 E-value=18 Score=33.51 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC-----c-hhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCc
Q 022892 141 CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD-----P-RNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGV 213 (290)
Q Consensus 141 ~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d-----L-~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~ 213 (290)
.+.+++.+.+....+.|-+-|=+.=+++.+++..-+.. + ..+..+++ +++||.+|+.+
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~--------------- 84 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYR--------------- 84 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCC---------------
Confidence 47888888888888888765555222222222210011 1 23344555 58999998766
Q ss_pred cCCCCcccHHHHHHHHHHcCCCEEEEee
Q 022892 214 ASGGLRELIPCIARTAIAVGVDGVFMEV 241 (290)
Q Consensus 214 ~~~g~~~~~~~~a~aAva~GA~G~~IEk 241 (290)
+.+..+|+..|++ +|+.
T Consensus 85 ---------~~vi~~al~~G~~--iINs 101 (257)
T TIGR01496 85 ---------AEVARAALEAGAD--IIND 101 (257)
T ss_pred ---------HHHHHHHHHcCCC--EEEE
Confidence 4456667777776 6663
No 408
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=77.49 E-value=37 Score=31.31 Aligned_cols=157 Identities=19% Similarity=0.139 Sum_probs=0.0
Q ss_pred CcEEEeecCcccHHHHhh-hccee--------cccCCccCCHHHHHHHHhcCCeEEEeCCCCC-CHHHHHHHHHHHHHcC
Q 022892 88 IPIVTDVHETVQCEEVGK-VADII--------QIPAFLCRQTDLLVAAAKTGKIINIKKGQFC-ASSVMVNSAEKVRLAG 157 (290)
Q Consensus 88 i~~~s~~~d~~~~~~l~~-~~d~~--------kIgs~~~~n~~lL~~~a~~~~PVilstG~~~-tl~e~~~Ave~i~~~G 157 (290)
+..+.+|-|.+++....+ .+|++ .+|+-...-..-+++.....+||=---|-.. .+..+..|+.-....|
T Consensus 1 m~lLvSv~~~~EA~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~G 80 (235)
T PF04476_consen 1 MKLLVSVRNVEEAEEALAGGADIIDLKNPAEGALGALFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATG 80 (235)
T ss_pred CceeecCCCHHHHHHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcC
Q ss_pred CCcEEEEeecCCCCCCCCCCCchhHHHHHhcC-----CCEEEeCCC------CCCCCCCCccCCCCccCCCCcccHHHHH
Q 022892 158 NPNVMVCERGTMFGYNDLIVDPRNLEWMREAN-----CPVVADVTH------SLQQPAGKKLDGGGVASGGLRELIPCIA 226 (290)
Q Consensus 158 n~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~-----~pV~~D~sH------s~~~~~~~~~~~~~~~~~g~~~~~~~~a 226 (290)
-+.+=+-.-++.......+.=-.....++.+. +.|+| +|+ .. ..+.
T Consensus 81 vdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~y-AD~~r~~~~~p----------------------~~l~ 137 (235)
T PF04476_consen 81 VDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGY-ADAQRVGSISP----------------------LDLP 137 (235)
T ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEe-cchhhhcCCCH----------------------HHHH
Q ss_pred HHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 227 RTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 227 ~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
..+..+|++|+||.+-.--.+.+-|| +++++|+++|+..|.
T Consensus 138 ~~a~~aG~~gvMlDTa~Kdg~~L~d~---~~~~~L~~Fv~~ar~ 178 (235)
T PF04476_consen 138 EIAAEAGFDGVMLDTADKDGGSLFDH---LSEEELAEFVAQARA 178 (235)
T ss_pred HHHHHcCCCEEEEecccCCCCchhhc---CCHHHHHHHHHHHHH
No 409
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=77.16 E-value=18 Score=33.98 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=67.1
Q ss_pred HHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEecc-cc------ccC---------CCCCcccCCCC
Q 022892 7 LFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKS-SF------DKA---------NRTSSKSFRGP 70 (290)
Q Consensus 7 ~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~-~~------~k~---------~rts~~~~~g~ 70 (290)
+.+.+...-..-|++-... +.+...+.|+.+.+ +|++.|... ++ +.+ +|+....|.|.
T Consensus 159 iv~~v~~~~~~Pv~vKl~~--~~~~~~~~a~~~~~----~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~ 232 (299)
T cd02940 159 ICRWVREAVKIPVIAKLTP--NITDIREIARAAKE----GGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGP 232 (299)
T ss_pred HHHHHHHhcCCCeEEECCC--CchhHHHHHHHHHH----cCCCEEEEecccccccccccccCCccccccCCCCcCcccCC
Confidence 3444433222234455443 55556677776655 699977521 11 100 12222234333
Q ss_pred Ch-hHHHHHHHHHHHhc--CCcEEE--eecCcccHHHHhh-hcceecccCCccC-CHHHHHH
Q 022892 71 GM-VEGLKILEKVKIAY--DIPIVT--DVHETVQCEEVGK-VADIIQIPAFLCR-QTDLLVA 125 (290)
Q Consensus 71 ~~-~~~l~~L~~~~~~~--Gi~~~s--~~~d~~~~~~l~~-~~d~~kIgs~~~~-n~~lL~~ 125 (290)
.+ ...|+++.++.+.. .++++. -+++.+++..+.. .++.++|++..+. .....+.
T Consensus 233 a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~~ 294 (299)
T cd02940 233 AVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDD 294 (299)
T ss_pred CcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcHHHH
Confidence 32 34588888888888 788887 6888887766554 7999999999886 4444443
No 410
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=77.01 E-value=9 Score=36.22 Aligned_cols=85 Identities=19% Similarity=0.233 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh--hc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK--VA 107 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~--~~ 107 (290)
..+.|++|.+ +|++.+.-. .|+....|.+ ...+++++++++..++|++. .+++++++..+.+ .+
T Consensus 149 ~~~~a~~l~~----~G~d~i~vh-----~r~~~~~~~~---~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~ga 216 (319)
T TIGR00737 149 AVEAARIAED----AGAQAVTLH-----GRTRAQGYSG---EANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGC 216 (319)
T ss_pred HHHHHHHHHH----hCCCEEEEE-----cccccccCCC---chhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCC
Confidence 4566666655 698887543 4544333432 23478888888889999998 7899998888764 59
Q ss_pred ceecccCCccCCHHHHHHHHh
Q 022892 108 DIIQIPAFLCRQTDLLVAAAK 128 (290)
Q Consensus 108 d~~kIgs~~~~n~~lL~~~a~ 128 (290)
|.+.||...+.|..+.+.+.+
T Consensus 217 d~VmigR~~l~~P~l~~~~~~ 237 (319)
T TIGR00737 217 DGVMIGRGALGNPWLFRQIEQ 237 (319)
T ss_pred CEEEEChhhhhCChHHHHHHH
Confidence 999999999999888777653
No 411
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=77.00 E-value=42 Score=33.02 Aligned_cols=153 Identities=12% Similarity=0.039 Sum_probs=96.2
Q ss_pred HHHHhcCCcEEEeecCcccHHHHhhhcceecccCCcc------CCHHHHHHHHhc-CCeEEEeC----CCCCCHHHHHHH
Q 022892 81 KVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLC------RQTDLLVAAAKT-GKIINIKK----GQFCASSVMVNS 149 (290)
Q Consensus 81 ~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~------~n~~lL~~~a~~-~~PVilst----G~~~tl~e~~~A 149 (290)
++++-.|.+.+..+-+-..+-.+. +..+.||.++- +...-...+... -+||++-- .+. +++.++.|
T Consensus 42 ~~ae~~G~k~ava~~sgT~AL~la--L~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~ni-d~~~ie~a 118 (374)
T COG0399 42 AFAEYLGVKYAVAVSSGTAALHLA--LLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNI-DPDLIEAA 118 (374)
T ss_pred HHHHHhCCCeEEEecChHHHHHHH--HHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCC-CHHHHHHH
Confidence 555668898888888877665553 22223777763 222222333333 45998854 443 88888887
Q ss_pred HHHHHHcCCCc-EEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHH
Q 022892 150 AEKVRLAGNPN-VMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIAR 227 (290)
Q Consensus 150 ve~i~~~Gn~~-i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~ 227 (290)
+.- ..+ |+..|= |+.+ .|+..|..+.+ .|++|+-|+.|+. |..+.|
T Consensus 119 It~-----~tKAIipVhl---~G~~---~dm~~i~~la~~~~l~vIEDaAqa~-----------Ga~y~g---------- 166 (374)
T COG0399 119 ITP-----RTKAIIPVHL---AGQP---CDMDAIMALAKRHGLPVIEDAAQAH-----------GATYKG---------- 166 (374)
T ss_pred ccc-----CCeEEEEehh---ccCC---CCHHHHHHHHHHcCCeEEEEcchhc-----------cCeecC----------
Confidence 641 123 555553 3333 48999999987 9999999999997 222233
Q ss_pred HHHHcCCCEEEEeeeCCCCCCCC---CCCCCCChHHHHHHHHHHHH
Q 022892 228 TAIAVGVDGVFMEVHDDPLNAPV---DGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 228 aAva~GA~G~~IEkH~t~dka~~---D~~~sl~p~~l~~lv~~ir~ 270 (290)
...|.-|-+--.-|.+.|.+. -+..-.+-++|.+.++.+|.
T Consensus 167 --k~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~ 210 (374)
T COG0399 167 --KKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRN 210 (374)
T ss_pred --cccccccceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHH
Confidence 245666667788888999884 33444555666666665554
No 412
>PRK09389 (R)-citramalate synthase; Provisional
Probab=76.93 E-value=65 Score=32.68 Aligned_cols=122 Identities=11% Similarity=0.094 Sum_probs=72.0
Q ss_pred HHHHHHHHhcCC-eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----CCCC---CCCC--chhHHHHHhcC
Q 022892 120 TDLLVAAAKTGK-IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF----GYND---LIVD--PRNLEWMREAN 189 (290)
Q Consensus 120 ~~lL~~~a~~~~-PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~----~y~~---~~~d--L~~i~~lk~~~ 189 (290)
.+.++++.+.+. +.+..-... ..++++.|++ .|.+.++++-..|.. .+.. +.++ ...+...|+.+
T Consensus 53 ~e~v~~i~~~~~~~~i~a~~r~-~~~di~~a~~----~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g 127 (488)
T PRK09389 53 REAIKAVTDEGLNAEICSFARA-VKVDIDAALE----CDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHG 127 (488)
T ss_pred HHHHHHHHhcCCCcEEEeeccc-CHHHHHHHHh----CCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC
Confidence 455566655433 333332222 5667666544 577778887766521 1111 1111 12233344467
Q ss_pred CCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 022892 190 CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELV 269 (290)
Q Consensus 190 ~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir 269 (290)
+.|.|+...+. .-..+++..++.++..+||+-+ .++|---.++|.++.++++.++
T Consensus 128 ~~v~~~~ed~~---------------r~~~~~l~~~~~~~~~~Ga~~i----------~l~DTvG~~~P~~~~~lv~~l~ 182 (488)
T PRK09389 128 LIVELSGEDAS---------------RADLDFLKELYKAGIEAGADRI----------CFCDTVGILTPEKTYELFKRLS 182 (488)
T ss_pred CEEEEEEeeCC---------------CCCHHHHHHHHHHHHhCCCCEE----------EEecCCCCcCHHHHHHHHHHHH
Confidence 77777554331 1125677788888899999832 2378888999999999999887
Q ss_pred HH
Q 022892 270 AI 271 (290)
Q Consensus 270 ~~ 271 (290)
+.
T Consensus 183 ~~ 184 (488)
T PRK09389 183 EL 184 (488)
T ss_pred hh
Confidence 63
No 413
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=76.77 E-value=22 Score=35.11 Aligned_cols=94 Identities=19% Similarity=0.192 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh---c-ceecccCCc--cCCHHHHHHHHhc--CCeEEEeCCCCCCHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV---A-DIIQIPAFL--CRQTDLLVAAAKT--GKIINIKKGQFCASS 144 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~---~-d~~kIgs~~--~~n~~lL~~~a~~--~~PVilstG~~~tl~ 144 (290)
.+.++.+++++++++|.++=+|+.+.+.+-+..+ + +-..|...+ ++|..-++.+-.. ---|.+|-...+++.
T Consensus 264 ~eai~~~~~l~e~~~i~~iEdPl~~~D~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGit 343 (408)
T cd03313 264 EELIDYYKELVKKYPIVSIEDPFDEDDWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLT 343 (408)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCcCHHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHH
Confidence 4556678888889999999999988877766553 3 123454445 3566665554333 336778888888888
Q ss_pred HHHHHHHHHHHcCCCcEEEEeec
Q 022892 145 VMVNSAEKVRLAGNPNVMVCERG 167 (290)
Q Consensus 145 e~~~Ave~i~~~Gn~~i~L~~~g 167 (290)
++.+++...+..|- .+++-||.
T Consensus 344 e~~~ia~lA~~~G~-~~~~sh~s 365 (408)
T cd03313 344 ETIEAIKLAKKNGY-GVVVSHRS 365 (408)
T ss_pred HHHHHHHHHHHcCC-eEEccCCC
Confidence 88888888777654 45555663
No 414
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=76.72 E-value=32 Score=32.38 Aligned_cols=68 Identities=13% Similarity=0.017 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHcCCCEEeccccccCC-CCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcc
Q 022892 31 HIMRMAKHIKSISTKVGLPLVFKSSFDKAN-RTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETV 98 (290)
Q Consensus 31 ~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~-rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~ 98 (290)
...+..|+.++.|++.|.+.|....-+..+ ......+....-...+++|.+|+++.|+.+.--.++..
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~ 97 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSET 97 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCc
Confidence 368999999999999999988876655211 01111111111146799999999999999888776665
No 415
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=76.69 E-value=4.2 Score=37.01 Aligned_cols=67 Identities=15% Similarity=0.295 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEeccccccC-CCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCc
Q 022892 29 EEHIMRMAKHIKSISTKVGLPLVFKSSFDKA-NRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHET 97 (290)
Q Consensus 29 ~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~-~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~ 97 (290)
.+..++..+++++.|+++|+..|....+..- ...+...+.. +.+.|.++.+++++.||.+.-|++..
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~--~~~~l~~l~~~a~~~gv~l~lE~~~~ 156 (284)
T PRK13210 89 RERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR--FIEGLAWAVEQAAAAQVMLAVEIMDT 156 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH--HHHHHHHHHHHHHHhCCEEEEEecCc
Confidence 4567899999999999999998876433210 0000001110 13568889999999999999999743
No 416
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=76.65 E-value=16 Score=32.20 Aligned_cols=61 Identities=25% Similarity=0.305 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCcEEE--eecCcccHHHHhhhcceecc----cCCccCCHHHHHHHHhcCCe-EEEeCCC
Q 022892 78 ILEKVKIAYDIPIVT--DVHETVQCEEVGKVADIIQI----PAFLCRQTDLLVAAAKTGKI-INIKKGQ 139 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~~~d~~kI----gs~~~~n~~lL~~~a~~~~P-VilstG~ 139 (290)
.|++++++ |+..+. +.++..+-.+++..+.-+-+ |=+...+..+++.+-..|.- +|++...
T Consensus 80 ~l~~~~~~-g~~~vv~G~i~sd~~~~~~e~~~~~~gl~~~~PLW~~~~~~ll~e~~~~g~~~~iv~v~~ 147 (194)
T cd01994 80 LLRKLKEE-GVDAVVFGAILSEYQRTRVERVCERLGLEPLAPLWGRDQEELLREMIEAGFKAIIIKVAA 147 (194)
T ss_pred HHHHHHHc-CCCEEEECccccHHHHHHHHHHHHHcCCEEEecccCCCHHHHHHHHHHcCCeEEEEEecc
Confidence 34444444 555333 44555454444443222111 11233445566666666554 4444433
No 417
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=76.65 E-value=25 Score=34.66 Aligned_cols=130 Identities=17% Similarity=0.134 Sum_probs=74.3
Q ss_pred HHH-HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCCC
Q 022892 123 LVA-AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTH 198 (290)
Q Consensus 123 L~~-~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~sH 198 (290)
|+. ...++.||++|.=+ +.++...+++ .|-+-|.+-..|... .....--+..++.+.+ . ++||++|.-=
T Consensus 237 i~~lr~~~~~pvivKgV~--s~~dA~~a~~----~Gvd~I~Vs~hGGr~-~d~~~~t~~~L~~i~~a~~~~~~vi~dGGI 309 (381)
T PRK11197 237 LEWIRDFWDGPMVIKGIL--DPEDARDAVR----FGADGIVVSNHGGRQ-LDGVLSSARALPAIADAVKGDITILADSGI 309 (381)
T ss_pred HHHHHHhCCCCEEEEecC--CHHHHHHHHh----CCCCEEEECCCCCCC-CCCcccHHHHHHHHHHHhcCCCeEEeeCCc
Confidence 454 45678999999763 6888887755 577667666555531 1111011344555444 3 5899886332
Q ss_pred CCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCc
Q 022892 199 SLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGK 278 (290)
Q Consensus 199 s~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~~~~lg~~ 278 (290)
- .| ..+. .|.++||++++|=.-|-.--+ ..+ +.--..-++.|.++++..-..+|.+
T Consensus 310 r----------------~g-----~Di~-KALaLGA~~V~iGr~~l~~la-~~G-~~gv~~~l~~l~~El~~~m~l~G~~ 365 (381)
T PRK11197 310 R----------------NG-----LDVV-RMIALGADTVLLGRAFVYALA-AAG-QAGVANLLDLIEKEMRVAMTLTGAK 365 (381)
T ss_pred C----------------cH-----HHHH-HHHHcCcCceeEhHHHHHHHH-hcc-HHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 2 13 3444 469999999988765521100 011 0001124666677777777778877
Q ss_pred ccccc
Q 022892 279 QRMNI 283 (290)
Q Consensus 279 ~~~~~ 283 (290)
++-++
T Consensus 366 ~i~el 370 (381)
T PRK11197 366 SISEI 370 (381)
T ss_pred CHHHh
Confidence 66544
No 418
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=76.53 E-value=49 Score=28.49 Aligned_cols=176 Identities=14% Similarity=0.088 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHH-HhcCCcEEEeecCc-ccHHHHhh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVK-IAYDIPIVTDVHET-VQCEEVGK 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~-~~~Gi~~~s~~~d~-~~~~~l~~ 105 (290)
|.....+.++.+. +.|++++-+..-+. + ..+. . .++ .+.++++++.+ ...++.+++ .|+ +.++.+.+
T Consensus 10 d~~~~~~~~~~~~----~~G~~~i~l~~~d~-~-~~~~-~-~~~-~~~~~~i~~~~~~~~~v~l~~--~d~~~~~~~~~~ 78 (211)
T cd00429 10 DFANLGEELKRLE----EAGADWIHIDVMDG-H-FVPN-L-TFG-PPVVKALRKHTDLPLDVHLMV--ENPERYIEAFAK 78 (211)
T ss_pred CHHHHHHHHHHHH----HcCCCEEEEecccC-C-CCCc-c-ccC-HHHHHHHHhhCCCcEEEEeee--CCHHHHHHHHHH
Confidence 4444445444444 46998876531110 0 0111 0 122 24455555554 222222333 232 13444444
Q ss_pred -hcceecccCCcc-CCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC---ch
Q 022892 106 -VADIIQIPAFLC-RQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD---PR 180 (290)
Q Consensus 106 -~~d~~kIgs~~~-~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d---L~ 180 (290)
.+|.++|..... +....++.+-+.+.-+++..+.. +..+...+. .. + .+.+++-+.. .+......+ +.
T Consensus 79 ~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~---~~-~-~d~i~~~~~~-~g~tg~~~~~~~~~ 151 (211)
T cd00429 79 AGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPG-TPVEVLEPY---LD-E-VDLVLVMSVN-PGFGGQKFIPEVLE 151 (211)
T ss_pred cCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCC-CCHHHHHHH---Hh-h-CCEEEEEEEC-CCCCCcccCHHHHH
Confidence 588887766543 22355677777888899988766 444433332 11 1 2344433321 111111222 23
Q ss_pred hHHHHHh-c-----CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 181 NLEWMRE-A-----NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 181 ~i~~lk~-~-----~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
.+..+++ . ++||.++. |.. +.-...+...||+|+++=+-++
T Consensus 152 ~i~~~~~~~~~~~~~~pi~v~G--------------------GI~---~env~~~~~~gad~iivgsai~ 198 (211)
T cd00429 152 KIRKLRELIPENNLNLLIEVDG--------------------GIN---LETIPLLAEAGADVLVAGSALF 198 (211)
T ss_pred HHHHHHHHHHhcCCCeEEEEEC--------------------CCC---HHHHHHHHHcCCCEEEECHHHh
Confidence 3444544 3 47887642 211 3345567789999999887764
No 419
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=76.48 E-value=38 Score=31.40 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=59.4
Q ss_pred HHHHHHcCCCcEEEEeecCC------CCCCC-CCCC--chhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcc
Q 022892 150 AEKVRLAGNPNVMVCERGTM------FGYND-LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRE 220 (290)
Q Consensus 150 ve~i~~~Gn~~i~L~~~gs~------~~y~~-~~~d--L~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~ 220 (290)
++.....|.+.+.++-+.|- .+... +.++ ...+...|+.|+.|.+.+-+.. .+ +.-..+
T Consensus 84 ~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~--d~----------~~~~~~ 151 (273)
T cd07941 84 LQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFF--DG----------YKANPE 151 (273)
T ss_pred HHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEecc--cc----------CCCCHH
Confidence 44455678888888877652 11111 1121 1233333446777777444331 00 001245
Q ss_pred cHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 221 LIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 221 ~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
++..+++.+..+|++.+. ++|..-.+.|+++.++++.+++
T Consensus 152 ~~~~~~~~~~~~g~~~i~----------l~DT~G~~~P~~v~~lv~~l~~ 191 (273)
T cd07941 152 YALATLKAAAEAGADWLV----------LCDTNGGTLPHEIAEIVKEVRE 191 (273)
T ss_pred HHHHHHHHHHhCCCCEEE----------EecCCCCCCHHHHHHHHHHHHH
Confidence 566777888889998432 2788889999999999998886
No 420
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=76.33 E-value=9.9 Score=36.54 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCccc-CCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKS-FRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~-~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~ 104 (290)
+.+..++++++|.+ +|+|++-....+-++++.... +.+. ...+...+++++..++|+++ .+++++.++.+.
T Consensus 222 ~~~e~~~i~~~Le~----~G~d~i~vs~g~~e~~~~~~~~~~~~--~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i 295 (353)
T cd02930 222 TWEEVVALAKALEA----AGADILNTGIGWHEARVPTIATSVPR--GAFAWATAKLKRAVDIPVIASNRINTPEVAERLL 295 (353)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEeCCCcCCCCCccccccCCc--hhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHH
Confidence 45556667766655 699988664433223332211 1111 12345567778888999998 567888777765
Q ss_pred h--hcceecccCCccCCHHHHHHHH
Q 022892 105 K--VADIIQIPAFLCRQTDLLVAAA 127 (290)
Q Consensus 105 ~--~~d~~kIgs~~~~n~~lL~~~a 127 (290)
+ .+|++.+|=..+.|.++.+.+.
T Consensus 296 ~~g~~D~V~~gR~~l~dP~~~~k~~ 320 (353)
T cd02930 296 ADGDADMVSMARPFLADPDFVAKAA 320 (353)
T ss_pred HCCCCChhHhhHHHHHCccHHHHHH
Confidence 5 4999999999999988877664
No 421
>PLN02535 glycolate oxidase
Probab=76.33 E-value=43 Score=32.79 Aligned_cols=100 Identities=20% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCeEEEeCCCCCCHHHHHHH---------------------HHHHHHcCCCcEEE-----------Eeec
Q 022892 120 TDLLVAAAKTGKIINIKKGQFCASSVMVNS---------------------AEKVRLAGNPNVMV-----------CERG 167 (290)
Q Consensus 120 ~~lL~~~a~~~~PVilstG~~~tl~e~~~A---------------------ve~i~~~Gn~~i~L-----------~~~g 167 (290)
..+-+++++.|.|.++||..+.++||+..+ ++.....|..-++| -.--
T Consensus 92 ~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r 171 (364)
T PLN02535 92 IATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIK 171 (364)
T ss_pred HHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhh
Q ss_pred CCCCCC-----------------------------CCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCC
Q 022892 168 TMFGYN-----------------------------DLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGG 217 (290)
Q Consensus 168 s~~~y~-----------------------------~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g 217 (290)
..|..| ...++...+.++++ .++||++=---+
T Consensus 172 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~------------------ 233 (364)
T PLN02535 172 NKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLT------------------ 233 (364)
T ss_pred cCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCC------------------
Q ss_pred CcccHHHHHHHHHHcCCCEEEEeee
Q 022892 218 LRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 218 ~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
+.-++.|+.+|+||+++--|
T Consensus 234 -----~~dA~~a~~~GvD~I~vsn~ 253 (364)
T PLN02535 234 -----REDAIKAVEVGVAGIIVSNH 253 (364)
T ss_pred -----HHHHHHHHhcCCCEEEEeCC
No 422
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=76.28 E-value=26 Score=34.04 Aligned_cols=163 Identities=18% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHH-HhcCCcEEE---eecCcccHHHHhh---
Q 022892 33 MRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVK-IAYDIPIVT---DVHETVQCEEVGK--- 105 (290)
Q Consensus 33 le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~-~~~Gi~~~s---~~~d~~~~~~l~~--- 105 (290)
.++|+.|.+. |.-.+.--.|. ++++..+.++.. ...+-..++ ...|.+-++.|.+
T Consensus 60 ~~mA~~la~~----g~~~~iHk~~~--------------~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~ 121 (346)
T PRK05096 60 FEMAKALASF----DILTAVHKHYS--------------VEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSP 121 (346)
T ss_pred HHHHHHHHHC----CCeEEEecCCC--------------HHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCC
Q ss_pred hcceecccCCccCCHHHHHHHHhcCC--e-EEEeCCCCCCHHHHHHHHHHHHHcCCCcE---------EEEeecCCCCCC
Q 022892 106 VADIIQIPAFLCRQTDLLVAAAKTGK--I-INIKKGQFCASSVMVNSAEKVRLAGNPNV---------MVCERGTMFGYN 173 (290)
Q Consensus 106 ~~d~~kIgs~~~~n~~lL~~~a~~~~--P-VilstG~~~tl~e~~~Ave~i~~~Gn~~i---------~L~~~gs~~~y~ 173 (290)
.+|++.|-+..=.+...++.+....+ | +.+=-|--.|.+ +++.+...|-+-+ +...-.+-.+||
T Consensus 122 g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e----~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~P 197 (346)
T PRK05096 122 ALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGE----MVEELILSGADIVKVGIGPGSVCTTRVKTGVGYP 197 (346)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHH----HHHHHHHcCCCEEEEcccCCccccCccccccChh
Q ss_pred CCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEE
Q 022892 174 DLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 239 (290)
Q Consensus 174 ~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~I 239 (290)
..+.=+..-...++++.||+.| ||-.+.| .+++| +++||+.+||
T Consensus 198 QltAV~~~a~~a~~~gvpiIAD---------------GGi~~sG------DI~KA-laaGAd~VMl 241 (346)
T PRK05096 198 QLSAVIECADAAHGLGGQIVSD---------------GGCTVPG------DVAKA-FGGGADFVML 241 (346)
T ss_pred HHHHHHHHHHHHHHcCCCEEec---------------CCccccc------HHHHH-HHcCCCEEEe
No 423
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=76.19 E-value=35 Score=33.03 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCCcEEE-ee---cCcccHHHHhh-hcceecccCCccCC-------------------------HHHH
Q 022892 74 EGLKILEKVKIAYDIPIVT-DV---HETVQCEEVGK-VADIIQIPAFLCRQ-------------------------TDLL 123 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s-~~---~d~~~~~~l~~-~~d~~kIgs~~~~n-------------------------~~lL 123 (290)
..++.+++++++.++|++. .+ ...+.+..+.+ .+|++-|+.+-=+| ...|
T Consensus 173 ~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l 252 (352)
T PRK05437 173 GWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSL 252 (352)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHH
Confidence 4567888888888999997 23 56667777776 69999986643211 1133
Q ss_pred HHHHh--cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 124 VAAAK--TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 124 ~~~a~--~~~PVilstG~~~tl~e~~~Ave 151 (290)
.++.+ .+.||+.+-|.. +..++..++.
T Consensus 253 ~~i~~~~~~ipvia~GGI~-~~~dv~k~l~ 281 (352)
T PRK05437 253 LEARSLLPDLPIIASGGIR-NGLDIAKALA 281 (352)
T ss_pred HHHHHhcCCCeEEEECCCC-CHHHHHHHHH
Confidence 33333 256777777777 7777666543
No 424
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=76.14 E-value=15 Score=36.68 Aligned_cols=65 Identities=12% Similarity=0.139 Sum_probs=44.6
Q ss_pred HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC-CCCCchhHHHHHh-cCCCEEEeCCCC
Q 022892 126 AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND-LIVDPRNLEWMRE-ANCPVVADVTHS 199 (290)
Q Consensus 126 ~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~-~~~dL~~i~~lk~-~~~pV~~D~sHs 199 (290)
+.+.|.-|.+-.... +++++++++. .|.++++++.-+ .|. ..+|+..|..+.+ .+++|++|++.+
T Consensus 121 l~~~Gi~v~~vd~~~-d~~~l~~~I~-----~~Tk~I~~e~pg---nP~~~v~Di~~I~~iA~~~gi~livD~T~~ 187 (432)
T PRK06702 121 LRKLGIDVTFFNPNL-TADEIVALAN-----DKTKLVYAESLG---NPAMNVLNFKEFSDAAKELEVPFIVDNTLA 187 (432)
T ss_pred HHHCCCEEEEECCCC-CHHHHHHhCC-----cCCeEEEEEcCC---CccccccCHHHHHHHHHHcCCEEEEECCCC
Confidence 456676555555433 6788777652 356788877543 233 4568889988876 899999999886
No 425
>PRK12999 pyruvate carboxylase; Reviewed
Probab=76.08 E-value=43 Score=37.65 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCc
Q 022892 141 CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLR 219 (290)
Q Consensus 141 ~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~ 219 (290)
.+++-+.+.++.+...|-+.|.|..-.... .|. .+ ..-+..||+ +++||.+ ++|.. .|
T Consensus 688 ~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l-~P~-~~-~~lv~~lk~~~~ipi~~-H~Hnt---------------~G-- 746 (1146)
T PRK12999 688 YDLDYYVDLAKELEKAGAHILAIKDMAGLL-KPA-AA-YELVSALKEEVDLPIHL-HTHDT---------------SG-- 746 (1146)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCccCCC-CHH-HH-HHHHHHHHHHcCCeEEE-EeCCC---------------Cc--
Confidence 388888888888888998877777765531 111 11 245677787 8999999 88874 13
Q ss_pred ccHHHHHHHHHHcCCCEEEEeeeCCCCCCC---------------CCCCCCCChHHHHHHHHHHHHHHH
Q 022892 220 ELIPCIARTAIAVGVDGVFMEVHDDPLNAP---------------VDGPTQWPLRNLEELLEELVAIAK 273 (290)
Q Consensus 220 ~~~~~~a~aAva~GA~G~~IEkH~t~dka~---------------~D~~~sl~p~~l~~lv~~ir~~~~ 273 (290)
+...-+.+|+.+||+ +|..-...=-.. .+....++++.+.++-+.+++++.
T Consensus 747 -la~an~laA~~aGad--~vD~av~glg~~tgn~~le~vv~~L~~~~~~t~idl~~l~~~s~~~~~~r~ 812 (1146)
T PRK12999 747 -NGLATYLAAAEAGVD--IVDVAVASMSGLTSQPSLNSIVAALEGTERDTGLDLDAIRKLSPYWEAVRP 812 (1146)
T ss_pred -hHHHHHHHHHHhCCC--EEEecchhhcCCcCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHh
Confidence 224556788999998 777655431110 133345666666655554444443
No 426
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=75.94 E-value=26 Score=31.76 Aligned_cols=65 Identities=9% Similarity=0.097 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEeccccccCCC--CCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCc
Q 022892 30 EHIMRMAKHIKSISTKVGLPLVFKSSFDKANR--TSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHET 97 (290)
Q Consensus 30 ~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~r--ts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~ 97 (290)
+..++..++.++.|+++|+..+....... .+ +....|+. +.+.++.|.+++++.||.+.-|++.+
T Consensus 86 ~~~~~~~~~~i~~a~~lGa~~i~~~~~~~-~~~~~~~~~~~~--~~~~l~~l~~~a~~~gv~l~iE~~~~ 152 (275)
T PRK09856 86 RESLDMIKLAMDMAKEMNAGYTLISAAHA-GYLTPPNVIWGR--LAENLSELCEYAENIGMDLILEPLTP 152 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcCCCC-CCCCCHHHHHHH--HHHHHHHHHHHHHHcCCEEEEecCCC
Confidence 45688999999999999999865532211 11 10001111 13678899999999999999998754
No 427
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=75.87 E-value=18 Score=33.95 Aligned_cols=95 Identities=21% Similarity=0.199 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccC-CCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKA-NRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~-~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~ 104 (290)
+.+..++.+++|.+ .|++.+-....... +........ .+-...+..++++++..++|++. .+++++.++.+.
T Consensus 226 ~~~e~~~la~~l~~----~G~d~i~vs~g~~~~~~~~~~~~~-~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l 300 (327)
T cd02803 226 TLEEAIEIAKALEE----AGVDALHVSGGSYESPPPIIPPPY-VPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEIL 300 (327)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEeCCCCCcccccccCCCC-CCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHH
Confidence 34555666666655 69998765432210 100000000 01023466777777788999998 566677776654
Q ss_pred h--hcceecccCCccCCHHHHHHHH
Q 022892 105 K--VADIIQIPAFLCRQTDLLVAAA 127 (290)
Q Consensus 105 ~--~~d~~kIgs~~~~n~~lL~~~a 127 (290)
+ .+|++.+|...+.|.++.+.+.
T Consensus 301 ~~g~aD~V~igR~~ladP~l~~k~~ 325 (327)
T cd02803 301 AEGKADLVALGRALLADPDLPNKAR 325 (327)
T ss_pred HCCCCCeeeecHHHHhCccHHHHHh
Confidence 4 5999999999999988877653
No 428
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=75.84 E-value=99 Score=31.66 Aligned_cols=99 Identities=12% Similarity=0.060 Sum_probs=60.2
Q ss_pred HHHHHHhcCCe-EEEeCC--CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c----CCCEE
Q 022892 122 LLVAAAKTGKI-INIKKG--QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A----NCPVV 193 (290)
Q Consensus 122 lL~~~a~~~~P-VilstG--~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~----~~pV~ 193 (290)
.++++-..|.. |.+.-- .-.+++-+...++.+...|-..|.|+.....- .|.. + .+-+..+++ + ++||.
T Consensus 214 ~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~-tP~~-v-~~lV~~l~~~~~~~~~i~I~ 290 (503)
T PLN03228 214 SIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAGATSVGIADTVGIN-MPHE-F-GELVTYVKANTPGIDDIVFS 290 (503)
T ss_pred HHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcCCCEEEEecCCCCC-CHHH-H-HHHHHHHHHHhccccCceeE
Confidence 34444455653 544431 12256777778888888898888888776531 2221 1 245566666 4 47788
Q ss_pred EeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 194 ~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+ +.|-. ..+...-+.+|+..||+ .++.-+.
T Consensus 291 ~-H~HND------------------~GlAvANslaAi~aGa~--~Vd~Tv~ 320 (503)
T PLN03228 291 V-HCHND------------------LGLATANTIAGICAGAR--QVEVTIN 320 (503)
T ss_pred e-cccCC------------------cChHHHHHHHHHHhCCC--EEEEecc
Confidence 8 77753 22334456789999998 7776543
No 429
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=75.67 E-value=32 Score=32.80 Aligned_cols=77 Identities=9% Similarity=0.068 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCCcEEEee----cCcccHHHHhh-hcceecccCCccCC---------------------------HH
Q 022892 74 EGLKILEKVKIAYDIPIVTDV----HETVQCEEVGK-VADIIQIPAFLCRQ---------------------------TD 121 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~----~d~~~~~~l~~-~~d~~kIgs~~~~n---------------------------~~ 121 (290)
..++.+++++++.++|++.-. ...+.+..+.+ .+|.+-|++.-=+| ..
T Consensus 165 ~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~ 244 (326)
T cd02811 165 GWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAA 244 (326)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHH
Confidence 456788899999999999843 56667777777 69999886531110 12
Q ss_pred HHHHHHh-c-CCeEEEeCCCCCCHHHHHHHHH
Q 022892 122 LLVAAAK-T-GKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 122 lL~~~a~-~-~~PVilstG~~~tl~e~~~Ave 151 (290)
.|.++.+ . +.||+.+-|.. +..++..|+.
T Consensus 245 ~l~~~~~~~~~ipIiasGGIr-~~~dv~kal~ 275 (326)
T cd02811 245 SLLEVRSALPDLPLIASGGIR-NGLDIAKALA 275 (326)
T ss_pred HHHHHHHHcCCCcEEEECCCC-CHHHHHHHHH
Confidence 3344333 3 67888888888 8888777654
No 430
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=75.62 E-value=83 Score=30.69 Aligned_cols=114 Identities=22% Similarity=0.272 Sum_probs=70.5
Q ss_pred cceecccCCccCCHHHHHH----HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhH
Q 022892 107 ADIIQIPAFLCRQTDLLVA----AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 182 (290)
Q Consensus 107 ~d~~kIgs~~~~n~~lL~~----~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i 182 (290)
-.=|.||++++.|.+.++. +-..+.||||..... +. .-.| +. .+ ...+
T Consensus 15 ~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~-~~----------~~~g--------------~~--~~-~~~~ 66 (347)
T PRK09196 15 EHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAG-AR----------KYAG--------------EP--FL-RHLI 66 (347)
T ss_pred HcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCcc-Hh----------hhCC--------------HH--HH-HHHH
Confidence 4567899999999876654 446788999887765 21 0001 00 01 1233
Q ss_pred HHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe-eeCCCCCCCCCCCCCCChH
Q 022892 183 EWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME-VHDDPLNAPVDGPTQWPLR 259 (290)
Q Consensus 183 ~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE-kH~t~dka~~D~~~sl~p~ 259 (290)
..+.+ . .+||.+--||+. . ......|+.+|...+||- +|+ +|+...++.+
T Consensus 67 ~~~a~~~~~VPValHLDHg~----------------~-----~e~i~~ai~~GftSVMiDgS~l------~~~~~~~p~e 119 (347)
T PRK09196 67 LAAVEEYPHIPVVMHQDHGN----------------S-----PATCQRAIQLGFTSVMMDGSLK------ADGKTPASYE 119 (347)
T ss_pred HHHHHhCCCCcEEEECCCCC----------------C-----HHHHHHHHHcCCCEEEecCCCC------cccCCCCCHH
Confidence 44444 5 489999888983 2 556778999999999987 443 4566666666
Q ss_pred HHHHHHHHHHHHHHHh
Q 022892 260 NLEELLEELVAIAKVS 275 (290)
Q Consensus 260 ~l~~lv~~ir~~~~~l 275 (290)
|==++.+++.+.....
T Consensus 120 ENI~~Tkevve~Ah~~ 135 (347)
T PRK09196 120 YNVDVTRKVVEMAHAC 135 (347)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 5444444444443333
No 431
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=75.57 E-value=26 Score=36.04 Aligned_cols=67 Identities=9% Similarity=0.081 Sum_probs=41.8
Q ss_pred CCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCE
Q 022892 118 RQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPV 192 (290)
Q Consensus 118 ~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV 192 (290)
.|++|++.+++ .+.|||.|-|.+ +++++..+++ .++-..++ .++-|.|....+. .....|++.|++|
T Consensus 469 ~d~~l~~~v~~~~~ipviasGG~g-~~~d~~~~~~----~~~~~a~~--aa~~fh~~~~~~~-~~k~~l~~~gi~v 536 (538)
T PLN02617 469 FDIELVKLVSDAVTIPVIASSGAG-TPEHFSDVFS----KTNASAAL--AAGIFHRKEVPIS-SVKEHLLEEGIET 536 (538)
T ss_pred cCHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHh----cCCccEEE--EEeeeccCCCCHH-HHHHHHHHCCCcc
Confidence 47889988765 689999999999 9999998764 23323333 4444444332121 2334444456665
No 432
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=75.56 E-value=79 Score=30.42 Aligned_cols=157 Identities=17% Similarity=0.096 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcC--Ce--EEEeCCCCCCHHHHHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTG--KI--INIKKGQFCASSVMVN 148 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~--~P--VilstG~~~tl~e~~~ 148 (290)
.+....+.+...+.|++.+=--| ...+ . -.-+.+|.......+.++.+.... .. +++-.|.. +.+++..
T Consensus 24 ~~~~~~i~~~L~~aGv~~IEvg~-~~g~---g--~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~-~~~dl~~ 96 (337)
T PRK08195 24 LEQVRAIARALDAAGVPVIEVTH-GDGL---G--GSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIG-TVDDLKM 96 (337)
T ss_pred HHHHHHHHHHHHHcCCCEEEeec-CCCC---C--CccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcc-cHHHHHH
Confidence 46677777778999988763322 1110 0 011223333344566677764322 22 22333544 8888877
Q ss_pred HHHHHHHcCCCcEEEE-eecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHH
Q 022892 149 SAEKVRLAGNPNVMVC-ERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIAR 227 (290)
Q Consensus 149 Ave~i~~~Gn~~i~L~-~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~ 227 (290)
|.+ .|-.-+.+. ||. ..+.-...+...|+.|+.|.+....+. .-..+.+...+.
T Consensus 97 a~~----~gvd~iri~~~~~------e~~~~~~~i~~ak~~G~~v~~~l~~a~---------------~~~~e~l~~~a~ 151 (337)
T PRK08195 97 AYD----AGVRVVRVATHCT------EADVSEQHIGLARELGMDTVGFLMMSH---------------MAPPEKLAEQAK 151 (337)
T ss_pred HHH----cCCCEEEEEEecc------hHHHHHHHHHHHHHCCCeEEEEEEecc---------------CCCHHHHHHHHH
Confidence 764 455444443 332 112334566666766766544222220 012355566777
Q ss_pred HHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 228 TAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 228 aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
.+..+||+.+ .+ +|..-.+.|+++.++++.+++-
T Consensus 152 ~~~~~Ga~~i----~i------~DT~G~~~P~~v~~~v~~l~~~ 185 (337)
T PRK08195 152 LMESYGAQCV----YV------VDSAGALLPEDVRDRVRALRAA 185 (337)
T ss_pred HHHhCCCCEE----Ee------CCCCCCCCHHHHHHHHHHHHHh
Confidence 7788999832 22 7999999999999999998853
No 433
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=75.55 E-value=8 Score=38.04 Aligned_cols=74 Identities=14% Similarity=0.046 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhc---CCcEEE--eecCcccHHHHhh-hcceecccCCccC-CHHHHHHHHhcCCeEEEeCCCCCCHHHH
Q 022892 74 EGLKILEKVKIAY---DIPIVT--DVHETVQCEEVGK-VADIIQIPAFLCR-QTDLLVAAAKTGKIINIKKGQFCASSVM 146 (290)
Q Consensus 74 ~~l~~L~~~~~~~---Gi~~~s--~~~d~~~~~~l~~-~~d~~kIgs~~~~-n~~lL~~~a~~~~PVilstG~~~tl~e~ 146 (290)
-.|++++++.+.. +||++. -+++.+++..... .++.++|++..+. .....+.+.+-=...+-+.|.. +++|+
T Consensus 237 ~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~~-si~e~ 315 (420)
T PRK08318 237 IALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKGFA-SLEDM 315 (420)
T ss_pred HHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHHHcCcc-hHHHH
Confidence 4688888988876 788887 6888887766544 7999999999887 4443333322111222234433 56665
Q ss_pred HH
Q 022892 147 VN 148 (290)
Q Consensus 147 ~~ 148 (290)
..
T Consensus 316 iG 317 (420)
T PRK08318 316 VG 317 (420)
T ss_pred hc
Confidence 53
No 434
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=75.42 E-value=38 Score=31.11 Aligned_cols=33 Identities=12% Similarity=-0.030 Sum_probs=27.9
Q ss_pred CCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHH
Q 022892 118 RQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 118 ~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave 151 (290)
.|+++++++.. .+.||+.+-|.. +++++..+.+
T Consensus 183 ~d~~~i~~~~~~~~ipvIasGGv~-s~eD~~~l~~ 216 (258)
T PRK01033 183 YDLELLKSFRNALKIPLIALGGAG-SLDDIVEAIL 216 (258)
T ss_pred CCHHHHHHHHhhCCCCEEEeCCCC-CHHHHHHHHH
Confidence 57888888764 688999999999 9999998753
No 435
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=74.76 E-value=32 Score=31.80 Aligned_cols=75 Identities=8% Similarity=0.045 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCCcEE--EeecC-cccHHHHhhhcc-eecc-c------CCccCC---HHHHHHHHh-cCCeEEEeCC
Q 022892 74 EGLKILEKVKIAYDIPIV--TDVHE-TVQCEEVGKVAD-IIQI-P------AFLCRQ---TDLLVAAAK-TGKIINIKKG 138 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~--s~~~d-~~~~~~l~~~~d-~~kI-g------s~~~~n---~~lL~~~a~-~~~PVilstG 138 (290)
+...++.+.|+++|+..+ .+|-. .+.+..+.+..+ ++.+ + .+.-.+ .++++.+-+ ++.||.+--|
T Consensus 127 ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfG 206 (256)
T TIGR00262 127 EESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFG 206 (256)
T ss_pred HHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCC
Confidence 345567777777776643 22222 233344444444 3333 1 111111 233333332 3557776666
Q ss_pred CCCCHHHHHHH
Q 022892 139 QFCASSVMVNS 149 (290)
Q Consensus 139 ~~~tl~e~~~A 149 (290)
.. |.+++..+
T Consensus 207 I~-~~e~~~~~ 216 (256)
T TIGR00262 207 IS-KPEQVKQA 216 (256)
T ss_pred CC-CHHHHHHH
Confidence 55 66666654
No 436
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=74.69 E-value=38 Score=32.96 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc-CCcEEEe-ecCcccHHHHhh-h
Q 022892 30 EHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY-DIPIVTD-VHETVQCEEVGK-V 106 (290)
Q Consensus 30 ~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~-Gi~~~s~-~~d~~~~~~l~~-~ 106 (290)
+..++.+++|+++ ..|+|+|...+=. |.. +..++.++.+.+.+ +++++.= +.+++.+..+.+ .
T Consensus 106 ~~d~er~~~L~~a--~~~~d~iviD~Ah-----------Ghs-~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aG 171 (343)
T TIGR01305 106 DNDLEKMTSILEA--VPQLKFICLDVAN-----------GYS-EHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSG 171 (343)
T ss_pred HHHHHHHHHHHhc--CCCCCEEEEECCC-----------CcH-HHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcC
Confidence 4568889998884 1258887764211 221 34455555555565 6788886 999999999988 7
Q ss_pred cceeccc--CCcc-----------CCHHHHHHHH----hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 107 ADIIQIP--AFLC-----------RQTDLLVAAA----KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 107 ~d~~kIg--s~~~-----------~n~~lL~~~a----~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
+|.+||| ++.+ -++..|..++ +.+.||+.--|.- +..++..|+. .|..-+++
T Consensus 172 AD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr-~~gDI~KALA----~GAd~VMl 240 (343)
T TIGR01305 172 ADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCT-CPGDVAKAFG----AGADFVML 240 (343)
T ss_pred CCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcC-chhHHHHHHH----cCCCEEEE
Confidence 9999988 2211 2333333332 3478999999999 8888888754 45544444
No 437
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=74.67 E-value=4.2 Score=37.15 Aligned_cols=66 Identities=11% Similarity=0.297 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCC--cccCCCCChhHHHHHHHHHHHhcCCcEEEeecCc
Q 022892 29 EEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTS--SKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHET 97 (290)
Q Consensus 29 ~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts--~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~ 97 (290)
++..++..++.++.|+++|+..|....+.. +... ...+. .+.+.++++.+++++.||.+.-|++..
T Consensus 94 r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~-~~~~~~~~~~~--~~~~~l~~l~~~A~~~GV~i~iE~~~~ 161 (283)
T PRK13209 94 RAQALEIMRKAIQLAQDLGIRVIQLAGYDV-YYEQANNETRR--RFIDGLKESVELASRASVTLAFEIMDT 161 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCccc-cccccHHHHHH--HHHHHHHHHHHHHHHhCCEEEEeecCC
Confidence 456788999999999999999887654431 1000 00011 013567889999999999999999743
No 438
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=74.62 E-value=90 Score=30.61 Aligned_cols=163 Identities=17% Similarity=0.203 Sum_probs=88.3
Q ss_pred hcCCCCeEEEEccCCc--cCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHh---
Q 022892 11 LKAAEPFFLLAGPNVI--ESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIA--- 85 (290)
Q Consensus 11 i~~~~~~~iIAgpcsi--en~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~--- 85 (290)
||-+.| ..|--.+.- .|.+..++..++|.+ +|+++|+...-+ .+.-+.|.+.+++
T Consensus 11 IGG~~P-I~VQSMt~t~t~Dv~atv~QI~~L~~----aGceivRvavp~---------------~~~a~al~~I~~~l~~ 70 (359)
T PF04551_consen 11 IGGGAP-ISVQSMTNTDTRDVEATVAQIKRLEE----AGCEIVRVAVPD---------------MEAAEALKEIKKRLRA 70 (359)
T ss_dssp ESTTS---EEEEE--S-TT-HHHHHHHHHHHHH----CT-SEEEEEE-S---------------HHHHHHHHHHHHHHHC
T ss_pred ecCCCC-EEEEecCCCCcccHHHHHHHHHHHHH----cCCCEEEEcCCC---------------HHHHHHHHHHHHhhcc
Confidence 444444 444433332 156677777777776 699999876433 3566667777777
Q ss_pred --cCCcEEEeecCccc-HHHHhhhcceecccCCcc--------CC-H----HHHHHHHhcCCeEEEeCCCCCCHHH-H--
Q 022892 86 --YDIPIVTDVHETVQ-CEEVGKVADIIQIPAFLC--------RQ-T----DLLVAAAKTGKIINIKKGQFCASSV-M-- 146 (290)
Q Consensus 86 --~Gi~~~s~~~d~~~-~~~l~~~~d~~kIgs~~~--------~n-~----~lL~~~a~~~~PVilstG~~~tl~e-~-- 146 (290)
..+|+++++|--.. +-...+.+|-+-|-.+++ .+ . ++++.+-..++||=+=.+.. |++. +
T Consensus 71 ~g~~iPlVADIHFd~~lAl~a~~~v~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~G-SL~~~~~~ 149 (359)
T PF04551_consen 71 LGSPIPLVADIHFDYRLALEAIEAVDKIRINPGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSG-SLEKDILE 149 (359)
T ss_dssp TT-SS-EEEEESTTCHHHHHHHHC-SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGG-GS-HHHHH
T ss_pred CCCCCCeeeecCCCHHHHHHHHHHhCeEEECCCcccccccccccchHHHHHHHHHHHHHCCCCEEEecccc-cCcHHHHh
Confidence 88999999865444 433445699999999999 66 3 45566666788875544433 4422 1
Q ss_pred ----------HHH---HHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCC
Q 022892 147 ----------VNS---AEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHS 199 (290)
Q Consensus 147 ----------~~A---ve~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs 199 (290)
+.| ++++.+.|-.++++-...|.. + ..+++-..|.+ +++|+-+-.+.+
T Consensus 150 ky~~t~~amvesA~~~~~~le~~~f~~iviSlKsSdv--~---~~i~ayr~la~~~dyPLHLGvTEA 211 (359)
T PF04551_consen 150 KYGPTPEAMVESALEHVRILEELGFDDIVISLKSSDV--P---ETIEAYRLLAERMDYPLHLGVTEA 211 (359)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEEEBSSH--H---HHHHHHHHHHHH--S-EEEEBSSE
T ss_pred hccchHHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCh--H---HHHHHHHHHHHhcCCCeEEeecCC
Confidence 112 346777888888887776531 0 11233333444 678875544543
No 439
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=74.55 E-value=42 Score=31.69 Aligned_cols=83 Identities=17% Similarity=0.347 Sum_probs=49.8
Q ss_pred CCCeEEEEccCC--ccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEE
Q 022892 14 AEPFFLLAGPNV--IESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIV 91 (290)
Q Consensus 14 ~~~~~iIAgpcs--ien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~ 91 (290)
+.+++|||=-.+ .+..+..++.|+...+ +|+|+|+-... ....++++++++..+|++
T Consensus 143 ~~d~~IiARTDa~~~~g~deAI~Ra~ay~~----AGAD~vfi~g~-----------------~~~e~i~~~~~~i~~Pl~ 201 (285)
T TIGR02317 143 DEDFVIIARTDARAVEGLDAAIERAKAYVE----AGADMIFPEAL-----------------TSLEEFRQFAKAVKVPLL 201 (285)
T ss_pred CCCEEEEEEcCcccccCHHHHHHHHHHHHH----cCCCEEEeCCC-----------------CCHHHHHHHHHhcCCCEE
Confidence 345888884443 2345566666666666 59998886422 125566777778888885
Q ss_pred EeecCc-----ccHHHHhh-hcceecccCCcc
Q 022892 92 TDVHET-----VQCEEVGK-VADIIQIPAFLC 117 (290)
Q Consensus 92 s~~~d~-----~~~~~l~~-~~d~~kIgs~~~ 117 (290)
.-+... .+++.+.+ .+..+..|...+
T Consensus 202 ~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~ 233 (285)
T TIGR02317 202 ANMTEFGKTPLFTADELREAGYKMVIYPVTAF 233 (285)
T ss_pred EEeccCCCCCCCCHHHHHHcCCcEEEEchHHH
Confidence 544321 25666666 466666665443
No 440
>PRK00077 eno enolase; Provisional
Probab=74.47 E-value=25 Score=34.90 Aligned_cols=93 Identities=20% Similarity=0.174 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh---cc-eecccCCcc--CCHHHHHHHHhcC--CeEEEeCCCCCCHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV---AD-IIQIPAFLC--RQTDLLVAAAKTG--KIINIKKGQFCASSV 145 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~---~d-~~kIgs~~~--~n~~lL~~~a~~~--~PVilstG~~~tl~e 145 (290)
+....+.+.+++++|.++=+|+++++.+-+.++ +. -..|...+. +|..-++.+-..+ --|.+|-+..+++.+
T Consensus 265 e~~~~~~~l~e~y~i~~iEdPl~~~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGite 344 (425)
T PRK00077 265 EMIDYLAELVDKYPIVSIEDGLDENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTE 344 (425)
T ss_pred HHHHHHHHHHhhCCcEEEEcCCCCccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHH
Confidence 445677888899999999999999887766553 31 244555553 5665555543322 357777777778888
Q ss_pred HHHHHHHHHHcCCCcEEEEeec
Q 022892 146 MVNSAEKVRLAGNPNVMVCERG 167 (290)
Q Consensus 146 ~~~Ave~i~~~Gn~~i~L~~~g 167 (290)
+.+++...+..|- .+++-||.
T Consensus 345 a~~ia~lA~~~gi-~~~vsh~s 365 (425)
T PRK00077 345 TLDAIELAKRAGY-TAVVSHRS 365 (425)
T ss_pred HHHHHHHHHHcCC-eEEEeCCC
Confidence 8888777766542 34444654
No 441
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=74.35 E-value=41 Score=29.79 Aligned_cols=44 Identities=9% Similarity=-0.023 Sum_probs=31.6
Q ss_pred CCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEee
Q 022892 118 RQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCER 166 (290)
Q Consensus 118 ~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~ 166 (290)
.|.++++++.+ .+.||+.+-|.. +++++....+ .|+-+-+++=+
T Consensus 177 ~d~~~i~~l~~~~~ipvia~GGi~-~~~di~~~~~----~g~~~gv~vg~ 221 (233)
T PRK00748 177 PNVEATRELAAAVPIPVIASGGVS-SLDDIKALKG----LGAVEGVIVGR 221 (233)
T ss_pred CCHHHHHHHHHhCCCCEEEeCCCC-CHHHHHHHHH----cCCccEEEEEH
Confidence 56788888765 579999999999 9999887544 45334444433
No 442
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=74.27 E-value=67 Score=30.34 Aligned_cols=85 Identities=14% Similarity=0.088 Sum_probs=54.0
Q ss_pred cceecccCCccCCHHHHHH----HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhH
Q 022892 107 ADIIQIPAFLCRQTDLLVA----AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 182 (290)
Q Consensus 107 ~d~~kIgs~~~~n~~lL~~----~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i 182 (290)
-.=|.||++++.|.+.+++ +-..+.||||..... .. .+ +| ++. + ...+
T Consensus 15 ~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~-~~-------~~-------------~g----~~~--~-~~~~ 66 (284)
T PRK09195 15 RGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPG-TF-------SY-------------AG----TEY--L-LAIV 66 (284)
T ss_pred HcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChh-HH-------hh-------------CC----HHH--H-HHHH
Confidence 4556788899888876554 345788888876654 11 00 00 100 0 1233
Q ss_pred HHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 183 EWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 183 ~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
..+.+ ..+||.+--||+. . ......|+.+|...+|+-
T Consensus 67 ~~~A~~~~VPV~lHLDHg~----------------~-----~e~i~~Ai~~GftSVM~D 104 (284)
T PRK09195 67 SAAAKQYHHPLALHLDHHE----------------K-----FDDIAQKVRSGVRSVMID 104 (284)
T ss_pred HHHHHHCCCCEEEECCCCC----------------C-----HHHHHHHHHcCCCEEEeC
Confidence 44444 7899999888873 2 566778899999888775
No 443
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=74.25 E-value=27 Score=32.92 Aligned_cols=113 Identities=11% Similarity=0.107 Sum_probs=60.3
Q ss_pred HHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCC-cEEEeecCc--ccHHHHhh-hcceeccc
Q 022892 38 HIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDI-PIVTDVHET--VQCEEVGK-VADIIQIP 113 (290)
Q Consensus 38 ~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi-~~~s~~~d~--~~~~~l~~-~~d~~kIg 113 (290)
++.+...++|+++|.... .....-|+..|+.+. ..-++.+.+..++.|. +++-=..-. ..++.+.+ .+|.+.+.
T Consensus 186 ~~~~~~~~~G~d~i~~~d-~~~~~isp~~f~e~~-~P~~k~i~~~i~~~g~~~~~lH~cG~~~~~~~~l~~~g~d~~~~~ 263 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFD-SSGSLISPEMFEEFI-LPYLKKIIDAIKEAGKDPVILHICGNTTPILDDLADLGADVLSVD 263 (343)
T ss_dssp HHHHHHHHTT-SEEEEEE-TTGGGS-HHHHHHHT-HHHHHHHHHHHHHHETE-EEEEETTHG-GGHHHHHTSS-SEEEE-
T ss_pred HHHHHHHHhCCCcccccc-cccCCCCHHHHHHHH-HHHHHHHHHHHHHhCCCceEEEECCchHHHHHHHHhcCCCEEEEc
Confidence 333444467999886654 211334444455443 3557778888899988 666544333 47777777 58887775
Q ss_pred CCccCCH-HHHHHHHhcCCeE--EEeC--CCCCCHHHHHHHHHHHHH
Q 022892 114 AFLCRQT-DLLVAAAKTGKII--NIKK--GQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 114 s~~~~n~-~lL~~~a~~~~PV--ilst--G~~~tl~e~~~Ave~i~~ 155 (290)
... |. +..+.++. ++.+ ++.+ -+.+|.+|+.+.+..+..
T Consensus 264 ~~~--~~~~~~~~~~~-~~~l~Gni~~~~~l~gt~eei~~~v~~~i~ 307 (343)
T PF01208_consen 264 EKV--DLAEAKRKLGD-KIVLMGNIDPVSLLFGTPEEIEEEVKRLIE 307 (343)
T ss_dssp TTS---HHHHHHHHTT-SSEEEEEB-G-GGGGS-HHHHHHHHHHHHH
T ss_pred CCC--CHHHHHHHhCC-CeEEECCCCccccccCCHHHHHHHHHHHHH
Confidence 443 55 44444431 2211 0111 112589999999987766
No 444
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=74.12 E-value=73 Score=32.65 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCCcEEEEeecCCC------CCCC-CCCC--chhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCC
Q 022892 148 NSAEKVRLAGNPNVMVCERGTMF------GYND-LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGL 218 (290)
Q Consensus 148 ~Ave~i~~~Gn~~i~L~~~gs~~------~y~~-~~~d--L~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~ 218 (290)
..++.+...|.+.++++-..|.. +-.. +.++ ..++...|+.++.|.+++-|.. .++.-.
T Consensus 89 ~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~------------Da~r~d 156 (524)
T PRK12344 89 PNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFF------------DGYKAN 156 (524)
T ss_pred HHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEcccccc------------ccccCC
Confidence 34555667788888888766521 1111 1111 1233444556778878666542 000112
Q ss_pred cccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 219 RELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 219 ~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
.+++..++.++...||+-+. ++|---.+.|.++.++++.+++-
T Consensus 157 ~~~l~~~~~~~~~~Gad~i~----------l~DTvG~~~P~~v~~li~~l~~~ 199 (524)
T PRK12344 157 PEYALATLKAAAEAGADWVV----------LCDTNGGTLPHEVAEIVAEVRAA 199 (524)
T ss_pred HHHHHHHHHHHHhCCCCeEE----------EccCCCCcCHHHHHHHHHHHHHh
Confidence 46677788888899998322 48988999999999999998764
No 445
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=73.73 E-value=82 Score=29.77 Aligned_cols=178 Identities=15% Similarity=0.146 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc--CCcEEEeecCcccHHHHhh----
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY--DIPIVTDVHETVQCEEVGK---- 105 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~--Gi~~~s~~~d~~~~~~l~~---- 105 (290)
.+++++.+++.|++.+.+++.- ... .+.. |.+ ++..-...++.++++. ++||+-=.-+- +.+.+.+
T Consensus 27 n~e~~~avi~aAe~~~sPvIlq-~s~---~~~~--~~~-~~~~~~~~~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~ 98 (293)
T PRK07315 27 NLEWTQAILRAAEAKKAPVLIQ-TSM---GAAK--YMG-GYKVCKNLIENLVESMGITVPVAIHLDHG-HYEDALECIEV 98 (293)
T ss_pred CHHHHHHHHHHHHHHCCCEEEE-cCc---cHHh--hcC-cHHHHHHHHHHHHHHcCCCCcEEEECCCC-CHHHHHHHHHc
Confidence 5789999999999999987753 222 1111 211 1223345577788888 67887644444 5554443
Q ss_pred hcceecccCCcc---CCHHHHHH----HHhcCCeEEEeCCCC-------------CCHHHHHHHHHHHHHcCCCcEEEEe
Q 022892 106 VADIIQIPAFLC---RQTDLLVA----AAKTGKIINIKKGQF-------------CASSVMVNSAEKVRLAGNPNVMVCE 165 (290)
Q Consensus 106 ~~d~~kIgs~~~---~n~~lL~~----~a~~~~PVilstG~~-------------~tl~e~~~Ave~i~~~Gn~~i~L~~ 165 (290)
.++.+++-...+ .|..+-++ +...+.||=..-|.- -+++|.+.++ ..|-+-+.+ =
T Consensus 99 GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~----~tgvD~LAv-~ 173 (293)
T PRK07315 99 GYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMV----ETGIDFLAA-G 173 (293)
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHH----HcCCCEEee-c
Confidence 588888877776 34433333 233566654433321 2556655544 456544443 3
Q ss_pred ecCC---CCCCCCCCCchhHHHHHh-c-CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 166 RGTM---FGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 166 ~gs~---~~y~~~~~dL~~i~~lk~-~-~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
-|+. |+-+...+|+..+..+++ . ++|++. |+- |+. . ..-...++..|++++=|=
T Consensus 174 iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVl---hGG-----------SGi--~-----~e~~~~~i~~Gi~KiNv~ 232 (293)
T PRK07315 174 IGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVL---HGG-----------SGI--P-----DDQIQEAIKLGVAKVNVN 232 (293)
T ss_pred cccccccCCCCCCcCCHHHHHHHHHhccCCCEEE---ECC-----------CCC--C-----HHHHHHHHHcCCCEEEEc
Confidence 3443 322224688888888888 6 699877 651 111 1 334556788999887665
Q ss_pred eeC
Q 022892 241 VHD 243 (290)
Q Consensus 241 kH~ 243 (290)
+-+
T Consensus 233 T~i 235 (293)
T PRK07315 233 TEC 235 (293)
T ss_pred cHH
Confidence 543
No 446
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=73.54 E-value=51 Score=27.24 Aligned_cols=76 Identities=13% Similarity=0.082 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhc-CCcEEEeecCcccHHH--Hhh-hcceecccCCccCC---------HHHHHHH-HhcCCeEEEeCCCC
Q 022892 75 GLKILEKVKIAY-DIPIVTDVHETVQCEE--VGK-VADIIQIPAFLCRQ---------TDLLVAA-AKTGKIINIKKGQF 140 (290)
Q Consensus 75 ~l~~L~~~~~~~-Gi~~~s~~~d~~~~~~--l~~-~~d~~kIgs~~~~n---------~~lL~~~-a~~~~PVilstG~~ 140 (290)
..+.+++..+.+ ++++...+......+. +.+ .++++.+..+..+. ...+..+ ...++||+..-|..
T Consensus 101 ~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~ 180 (200)
T cd04722 101 DLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGIN 180 (200)
T ss_pred HHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCC
Confidence 344555555555 8998888765554433 344 58998887765532 1333332 34688999999988
Q ss_pred CCHHHHHHHHH
Q 022892 141 CASSVMVNSAE 151 (290)
Q Consensus 141 ~tl~e~~~Ave 151 (290)
+.+++..+++
T Consensus 181 -~~~~~~~~~~ 190 (200)
T cd04722 181 -DPEDAAEALA 190 (200)
T ss_pred -CHHHHHHHHH
Confidence 7787776654
No 447
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=73.30 E-value=83 Score=30.86 Aligned_cols=175 Identities=17% Similarity=0.170 Sum_probs=102.6
Q ss_pred cCCCCChhHHHHHHHHHHHhcCCcEEEeecCcc---cHHHHhh--------hcceecccCCccCCH------HH------
Q 022892 66 SFRGPGMVEGLKILEKVKIAYDIPIVTDVHETV---QCEEVGK--------VADIIQIPAFLCRQT------DL------ 122 (290)
Q Consensus 66 ~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~---~~~~l~~--------~~d~~kIgs~~~~n~------~l------ 122 (290)
.|+|+. -|+.-+++.+...+=|++.+++-|. +.+.+++ .+|++|=--. +.|. +.
T Consensus 107 ~F~GP~--fGi~G~R~~lgv~~RPl~gtiiKP~~Glsp~~~a~~~y~~~~GG~D~IKDDE~-l~~q~~~p~~eRv~~~~~ 183 (366)
T cd08148 107 LFPGPK--FGIDGIRKLLGVYGRPLVGTIIKPKLGLNPKYTAEAAYAAALGGLDLIKDDET-LTDQPFCPLRDRITEVAA 183 (366)
T ss_pred cCCCCC--CCchhHHHHhCCCCCceeEeecccccCCCHHHHHHHHHHHHhCCCCccccccc-cCCCCCCcHHHHHHHHHH
Confidence 356554 4566677777788999999998887 3333333 2555553222 1221 11
Q ss_pred -H-HHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-c--CCCEEEeCC
Q 022892 123 -L-VAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVT 197 (290)
Q Consensus 123 -L-~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~--~~pV~~D~s 197 (290)
+ ++-.++|...+..-+..+..+||.+=++.+.+.|.. +++.+...+++ .++..|++ + ++||..
T Consensus 184 a~~~a~~eTG~~~~y~~NiT~~~~em~~ra~~~~~~G~~--~~mv~~~~~G~-------~~l~~l~~~~~~~l~Iha--- 251 (366)
T cd08148 184 ALDRVQEETGEKKLYAVNVTAGTFEIIERAERALELGAN--MLMVDVLTAGF-------SALQALAEDFEIDLPIHV--- 251 (366)
T ss_pred HHHHHHHhhCCcceEEEEccCCHHHHHHHHHHHHHhCCC--EEEEeccccch-------HHHHHHHHhCcCCcEEEe---
Confidence 1 223468888777777777889999999999999974 44444433333 56777776 4 677754
Q ss_pred CCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 198 HSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 198 Hs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
|-.. -|+. +.+ ..-|. .+ ..+.+..--+|||.+++-.+ -+++..+.++..++.+.+++
T Consensus 252 HrA~-~ga~---~~~-~~~G~-~~-~~l~kl~RLaGaD~~~~~t~--------~Gk~~~~~~~~~~~~~~~~~ 309 (366)
T cd08148 252 HRAM-HGAV---TRS-KFHGI-SM-LVLAKLLRMAGGDFIHTGTV--------VGKMALEREEALGIADALTD 309 (366)
T ss_pred cccc-cccc---ccC-CCCCc-CH-HHHHHHHHHcCCCccccCCc--------ccCcCCCHHHHHHHHHHHhC
Confidence 4210 0000 000 01121 11 33455556689996654444 36777788888888777664
No 448
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=73.25 E-value=37 Score=30.23 Aligned_cols=154 Identities=21% Similarity=0.262 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHH----HHHH-hcCCcEEEeecCcccHHHHh
Q 022892 30 EHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILE----KVKI-AYDIPIVTDVHETVQCEEVG 104 (290)
Q Consensus 30 ~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~----~~~~-~~Gi~~~s~~~d~~~~~~l~ 104 (290)
+..++.|+++.+ .||+++=-..-. |.|+. .....++.+++|. ..+. ..++++.-+-++++.++...
T Consensus 19 ~~a~~~a~~~~~----~GAdiIDIg~~s----t~p~~-~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL 89 (210)
T PF00809_consen 19 DEAVKRAREQVE----AGADIIDIGAES----TRPGA-TPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAAL 89 (210)
T ss_dssp HHHHHHHHHHHH----TT-SEEEEESST----SSTTS-SSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHH----hcCCEEEecccc----cCCCC-CcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHH
Confidence 445556666666 699988665322 33332 1111134444433 3332 47999999999999999876
Q ss_pred h-hccee-cccCCccCCHHHHHHHHhcCCeEEEeCCC------CCCH----HHHHHHHHHHHH-------cCC-CcEEEE
Q 022892 105 K-VADII-QIPAFLCRQTDLLVAAAKTGKIINIKKGQ------FCAS----SVMVNSAEKVRL-------AGN-PNVMVC 164 (290)
Q Consensus 105 ~-~~d~~-kIgs~~~~n~~lL~~~a~~~~PVilstG~------~~tl----~e~~~Ave~i~~-------~Gn-~~i~L~ 164 (290)
+ ..+++ -+.++.- +..++..+++.+.||++-.-- ..++ +-+...++++.+ .|- ++=+++
T Consensus 90 ~~g~~~ind~~~~~~-~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~ 168 (210)
T PF00809_consen 90 KAGADIINDISGFED-DPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIIL 168 (210)
T ss_dssp HHTSSEEEETTTTSS-STTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEE
T ss_pred HcCcceEEecccccc-cchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEee
Confidence 6 45554 3333332 667788899999999886543 2233 334445555554 575 234666
Q ss_pred eecCCCCCCCCCCC---chhHHHHHhc-CCCEEE
Q 022892 165 ERGTMFGYNDLIVD---PRNLEWMREA-NCPVVA 194 (290)
Q Consensus 165 ~~gs~~~y~~~~~d---L~~i~~lk~~-~~pV~~ 194 (290)
..|..|+ ....-+ ++.+..++++ +.|+.+
T Consensus 169 DPgigf~-~~~~~~~~~l~~i~~~~~~~~~p~l~ 201 (210)
T PF00809_consen 169 DPGIGFG-KDPEQNLELLRNIEELKELFGYPILV 201 (210)
T ss_dssp ETTTTSS-TTHHHHHHHHHTHHHHHTTSSSEBEE
T ss_pred ccccCcC-CCHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 7776542 111223 3445555564 778654
No 449
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=73.23 E-value=86 Score=29.78 Aligned_cols=175 Identities=17% Similarity=0.245 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh----c
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV----A 107 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~----~ 107 (290)
.+|..+.+.+.|++.+.+++--.+ +-... |-+- ..........++++++|||+----+-.+.+.+.+. .
T Consensus 27 nlE~~~AileaA~e~~sPvIiq~S----~g~~~--y~gg-~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~ai~~GF 99 (286)
T COG0191 27 NLETLQAILEAAEEEKSPVIIQFS----EGAAK--YAGG-ADSLAHMVKALAEKYGVPVALHLDHGASFEDCKQAIRAGF 99 (286)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEec----ccHHH--Hhch-HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHhcCC
Confidence 478899999999999998765321 11111 2210 23556678889999999999866555566655442 2
Q ss_pred c-eecccCCcc--CCH----HHHHHHHhcCCeEEEeCCCCCCH-------------HHHHHHHHHHHHcCCCcEEEEeec
Q 022892 108 D-IIQIPAFLC--RQT----DLLVAAAKTGKIINIKKGQFCAS-------------SVMVNSAEKVRLAGNPNVMVCERG 167 (290)
Q Consensus 108 d-~~kIgs~~~--~n~----~lL~~~a~~~~PVilstG~~~tl-------------~e~~~Ave~i~~~Gn~~i~L~~~g 167 (290)
. .-.=||..- .|. ..++.+.+.|.+|=..-|.-+.. .+..+|.+.+...|.+-++. -=|
T Consensus 100 sSvMiDgS~~~~eENi~~tkevv~~ah~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~-aiG 178 (286)
T COG0191 100 SSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAA-AIG 178 (286)
T ss_pred ceEEecCCcCCHHHHHHHHHHHHHHHHHcCCcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcceeee-ecc
Confidence 2 222233322 344 34556677888887777765433 34667778887777765554 334
Q ss_pred CCCC-CC--CCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCC
Q 022892 168 TMFG-YN--DLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 235 (290)
Q Consensus 168 s~~~-y~--~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~ 235 (290)
+..+ |+ ...+|+..+...++ .++|.++ |+ ||+.+ ..-.+.|+.+|++
T Consensus 179 n~HG~Yk~~~p~L~~~~L~~i~~~~~~PlVl---HG-----------gSGip-------~~eI~~aI~~GV~ 229 (286)
T COG0191 179 NVHGVYKPGNPKLDFDRLKEIQEAVSLPLVL---HG-----------GSGIP-------DEEIREAIKLGVA 229 (286)
T ss_pred ccccCCCCCCCCCCHHHHHHHHHHhCCCEEE---eC-----------CCCCC-------HHHHHHHHHhCce
Confidence 4432 55 35688888888888 7899877 75 12211 2335578999975
No 450
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=73.14 E-value=85 Score=29.69 Aligned_cols=156 Identities=15% Similarity=0.258 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcce--
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADI-- 109 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~-- 109 (290)
.+++++.+++.|++.+.+++.- ... ..++..+++.-...++.++++.++|++----+-.+.+.+.+.++.
T Consensus 27 n~e~~~avi~AAee~~sPvIlq-~s~-------~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GF 98 (286)
T PRK12738 27 NAETIQAILEVCSEMRSPVILA-GTP-------GTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGV 98 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEE-cCc-------chhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 3899999999999999987653 221 112222333445567888899999999877777777776553222
Q ss_pred --ecccCCcc---CCHHHHHHH----HhcCCeEEEeCCCCC---------C----HHHHHHHHHHHHHcCCCcEEEEeec
Q 022892 110 --IQIPAFLC---RQTDLLVAA----AKTGKIINIKKGQFC---------A----SSVMVNSAEKVRLAGNPNVMVCERG 167 (290)
Q Consensus 110 --~kIgs~~~---~n~~lL~~~----a~~~~PVilstG~~~---------t----l~e~~~Ave~i~~~Gn~~i~L~~~g 167 (290)
+=|-+..+ .|..+-+++ -..|.+|=-.-|.-+ . ..+-+.|.+.+...|-+ ..-.-.|
T Consensus 99 tSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD-~LAvaiG 177 (286)
T PRK12738 99 RSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVD-SLAVAIG 177 (286)
T ss_pred CeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCC-EEEeccC
Confidence 22222222 455444433 234665422211110 1 23456777788888764 4455566
Q ss_pred CCCC-CCC-CCCCchhHHHHHh-cCCCEEEeCCCC
Q 022892 168 TMFG-YND-LIVDPRNLEWMRE-ANCPVVADVTHS 199 (290)
Q Consensus 168 s~~~-y~~-~~~dL~~i~~lk~-~~~pV~~D~sHs 199 (290)
+..+ |+. ..+|+..+..+++ .++|+++ |+
T Consensus 178 t~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVL---HG 209 (286)
T PRK12738 178 TAHGLYSKTPKIDFQRLAEIREVVDVPLVL---HG 209 (286)
T ss_pred cccCCCCCCCcCCHHHHHHHHHHhCCCEEE---eC
Confidence 6543 643 4688888888888 8999877 76
No 451
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=73.08 E-value=77 Score=29.17 Aligned_cols=85 Identities=24% Similarity=0.294 Sum_probs=50.1
Q ss_pred HHhcCCeEEEeC-------CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCC
Q 022892 126 AAKTGKIINIKK-------GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVT 197 (290)
Q Consensus 126 ~a~~~~PVilst-------G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~s 197 (290)
+.+.+.|+++-. +...+.+++..+++.....|-+-+ - ++ |+. +...+..+.+ ..+||..-
T Consensus 135 ~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~v---K--t~--~~~---~~~~l~~~~~~~~ipV~a~-- 202 (267)
T PRK07226 135 CEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIV---K--TN--YTG---DPESFREVVEGCPVPVVIA-- 202 (267)
T ss_pred HHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEE---e--eC--CCC---CHHHHHHHHHhCCCCEEEE--
Confidence 345789988741 222367888888887777776443 1 11 332 4556655555 57898651
Q ss_pred CCCCCCCCCccCCCCccCCCCc----ccHHHHHHHHHHcCCCEEEEe
Q 022892 198 HSLQQPAGKKLDGGGVASGGLR----ELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 198 Hs~~~~~~~~~~~~~~~~~g~~----~~~~~~a~aAva~GA~G~~IE 240 (290)
+|.+ +........++.+||+|+.+=
T Consensus 203 ------------------GGi~~~~~~~~l~~v~~~~~aGA~Gis~g 231 (267)
T PRK07226 203 ------------------GGPKTDTDREFLEMVRDAMEAGAAGVAVG 231 (267)
T ss_pred ------------------eCCCCCCHHHHHHHHHHHHHcCCcEEehh
Confidence 2322 233344556788999987543
No 452
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=72.89 E-value=85 Score=30.37 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 022892 120 TDLLVAAAKTGKIINIKKGQFCASSVMVNS 149 (290)
Q Consensus 120 ~~lL~~~a~~~~PVilstG~~~tl~e~~~A 149 (290)
..+-+++++.|.|..+|+....+++|+..+
T Consensus 84 ~~~AraA~~~gi~~~lss~s~~s~e~v~~~ 113 (344)
T cd02922 84 LNLARAAGKHGILQMISTNASCSLEEIVDA 113 (344)
T ss_pred HHHHHHHHHcCCCEEecCcccCCHHHHHHh
Confidence 467788888999999999888889987665
No 453
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=72.88 E-value=52 Score=32.73 Aligned_cols=139 Identities=14% Similarity=0.128 Sum_probs=84.4
Q ss_pred cceecccCCccCC--HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----CCCC---CCC
Q 022892 107 ADIIQIPAFLCRQ--TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF----GYND---LIV 177 (290)
Q Consensus 107 ~d~~kIgs~~~~n--~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~----~y~~---~~~ 177 (290)
+|++-+|....++ +.+.+++.. ..+..+++=..+-...+...++.+...|.+.+++.-..|.. .+.. +.+
T Consensus 38 v~~IE~g~p~~s~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l 116 (409)
T COG0119 38 VDYIEAGFPVASPGDFEFVRAIAE-KAGLFICALIAALARAIKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVL 116 (409)
T ss_pred CCEEEEeCCcCChhhHHHHHHHHH-hcCcccchhhhhhHHhHHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHH
Confidence 3444444444432 244455553 22222222222345566667778888898899999888731 1111 122
Q ss_pred C--chhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCC
Q 022892 178 D--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQ 255 (290)
Q Consensus 178 d--L~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~s 255 (290)
+ ..++...++.++.+.+++.|+. .-..+++..+..++.+.||+ +..+ +|---.
T Consensus 117 ~~~~~~v~ya~~~g~~~~~~~Ed~~---------------rt~~~~l~~~~~~~~~~ga~----~i~l------~DTvG~ 171 (409)
T COG0119 117 ERAVDAVEYARDHGLEVRFSAEDAT---------------RTDPEFLAEVVKAAIEAGAD----RINL------PDTVGV 171 (409)
T ss_pred HHHHHHHHHHHHcCCeEEEEeeccc---------------cCCHHHHHHHHHHHHHcCCc----EEEE------CCCcCc
Confidence 2 1334444556789988777763 12356777788888888886 3333 788888
Q ss_pred CChHHHHHHHHHHHHH
Q 022892 256 WPLRNLEELLEELVAI 271 (290)
Q Consensus 256 l~p~~l~~lv~~ir~~ 271 (290)
++|.++.++++.+++.
T Consensus 172 ~~P~~~~~~i~~l~~~ 187 (409)
T COG0119 172 ATPNEVADIIEALKAN 187 (409)
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999988764
No 454
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=72.37 E-value=21 Score=36.65 Aligned_cols=173 Identities=16% Similarity=0.113 Sum_probs=84.9
Q ss_pred HHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 022892 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 155 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~ 155 (290)
|+.|.+..++......-.++|+-++-.+....+.+.+++..+.-..= .+..+.|=.=-= ....+-+.|+.|..
T Consensus 48 w~ll~~~~~~~~~~~tlGAld~~qa~q~~kal~aIY~SGwq~Sa~~~---~~~e~~PD~s~y----p~~tVp~~V~~i~~ 120 (527)
T TIGR01346 48 WRALTQHGDNKTYSNTFGALDPVQASQMAKYLDAIYLSGWQCSSTAN---TSNEPGPDLADY----PADTVPNKVEHLFN 120 (527)
T ss_pred HHHHHHhhhcCCceeeccccCHHHHHHHHHHhhheehhHHHHHhhhc---ccCCCCCCcccc----cccccHHHHHHHHH
Confidence 44455555555677777889998888877777777777765532110 011122211101 22333333333211
Q ss_pred c--CCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC
Q 022892 156 A--GNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG 233 (290)
Q Consensus 156 ~--Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G 233 (290)
. =.+++.--+|... .+.+..+...+ .+-+||++|.+.+- +|... +....+..+..|
T Consensus 121 aq~~hDr~q~~~~~~~--~~~~r~~~~~~----D~~iPIiaD~DtGy---------------G~~~~-v~~~vk~~ieaG 178 (527)
T TIGR01346 121 AQLFHDRKQREARDTS--VDNERSKTPYI----DYLVPIVADGDAGF---------------GGATA-VFKLQKAFIERG 178 (527)
T ss_pred HHHHHHHHHHHhcccc--chhhhcccccc----ccccceEEECCCCC---------------CCcHH-HHHHHHHHHHcC
Confidence 1 0001111111110 00000010010 13479999999773 23222 345567778899
Q ss_pred CCEEEEeeeCCCCCCCC--CCCCCCChHHHHHHHHHHHHHHHHhCC
Q 022892 234 VDGVFMEVHDDPLNAPV--DGPTQWPLRNLEELLEELVAIAKVSKG 277 (290)
Q Consensus 234 A~G~~IEkH~t~dka~~--D~~~sl~p~~l~~lv~~ir~~~~~lg~ 277 (290)
|.|+-||-...+.|.-. .++.-.+.+++-+=++.+|.....+|.
T Consensus 179 AaGI~IEDq~~~~KkcGh~~gk~Lvp~~e~v~RI~AAr~Aad~~g~ 224 (527)
T TIGR01346 179 AAGVHWEDQLSSEKKCGHMAGKVLIPVQEHVNRLVAARLAADIMGV 224 (527)
T ss_pred CeEEEEEcCCCcccccCCCCCCcccCHHHHHHHHHHHHHHHHhcCC
Confidence 99999998764433322 233344556555555555555555665
No 455
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.33 E-value=20 Score=32.10 Aligned_cols=107 Identities=11% Similarity=0.154 Sum_probs=72.8
Q ss_pred EEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcc
Q 022892 19 LLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETV 98 (290)
Q Consensus 19 iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~ 98 (290)
++.|.+.+=|. +.+++.++ +|++.+.-..++ +.+.++|++.|++++-=++.|.
T Consensus 56 ~~vGAGTVl~~----e~a~~ai~----aGA~FivSP~~~-------------------~~vi~~a~~~~i~~iPG~~Tpt 108 (201)
T PRK06015 56 AIVGAGTILNA----KQFEDAAK----AGSRFIVSPGTT-------------------QELLAAANDSDVPLLPGAATPS 108 (201)
T ss_pred CEEeeEeCcCH----HHHHHHHH----cCCCEEECCCCC-------------------HHHHHHHHHcCCCEeCCCCCHH
Confidence 55566665333 34555555 588877654333 3577889999999999999999
Q ss_pred cHHHHhh-hcceecccCCccC-CHHHHHHHHh-c-CCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 022892 99 QCEEVGK-VADIIQIPAFLCR-QTDLLVAAAK-T-GKIINIKKGQFCASSVMVNSAEKVRLAGN 158 (290)
Q Consensus 99 ~~~~l~~-~~d~~kIgs~~~~-n~~lL~~~a~-~-~~PVilstG~~~tl~e~~~Ave~i~~~Gn 158 (290)
++....+ .++++|+=-...- -..+++.+.. . +.|++ -||-- +++ ++-+++. .|+
T Consensus 109 Ei~~A~~~Ga~~vK~FPa~~~GG~~yikal~~plp~~~l~-ptGGV-~~~---n~~~~l~-ag~ 166 (201)
T PRK06015 109 EVMALREEGYTVLKFFPAEQAGGAAFLKALSSPLAGTFFC-PTGGI-SLK---NARDYLS-LPN 166 (201)
T ss_pred HHHHHHHCCCCEEEECCchhhCCHHHHHHHHhhCCCCcEE-ecCCC-CHH---HHHHHHh-CCC
Confidence 9988877 6999999766555 4788888764 2 44555 66544 554 5555665 344
No 456
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=72.17 E-value=35 Score=33.38 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=51.3
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-CCCCCCCCCCchhHHHHHh-cCCCEEEeCCC
Q 022892 121 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT-MFGYNDLIVDPRNLEWMRE-ANCPVVADVTH 198 (290)
Q Consensus 121 ~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs-~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sH 198 (290)
.+++++.+.+.+ ++..+. ..+..+-++.+...|- +++.+|-.+ .-.|....-|...+..+++ .++||+. .+-
T Consensus 122 ~iv~~~~~~~V~--v~vr~~--~~~~~e~a~~l~eaGv-d~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa-G~V 195 (368)
T PRK08649 122 ERIAEIRDAGVI--VAVSLS--PQRAQELAPTVVEAGV-DLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV-GGC 195 (368)
T ss_pred HHHHHHHhCeEE--EEEecC--CcCHHHHHHHHHHCCC-CEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE-eCC
Confidence 345555554444 444443 2333444555666765 566666543 1112111113344555544 8899976 222
Q ss_pred CCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 199 SLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 199 s~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
. . ...++.+..+|||++++-.+.
T Consensus 196 ~-----------------t-----~e~A~~l~~aGAD~V~VG~G~ 218 (368)
T PRK08649 196 V-----------------T-----YTTALHLMRTGAAGVLVGIGP 218 (368)
T ss_pred C-----------------C-----HHHHHHHHHcCCCEEEECCCC
Confidence 2 1 456777778999999997554
No 457
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=72.06 E-value=1.1e+02 Score=30.69 Aligned_cols=134 Identities=11% Similarity=0.079 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
.+..+.+.+.|+++|++++-.= .++...+ .++-+-+|..++..... +.+...++-|++|+. +.+|+..|.+
T Consensus 247 ~~la~~l~~l~~~~gv~LiIND----~~dlAl~~gAdGVHLGQeDL~~~~a-R~ilg~~~iIGvStH---s~eEl~~A~~ 318 (437)
T PRK12290 247 EQQIIRAIALGREYNAQVFIND----YWQLAIKHQAYGVHLGQEDLEEANL-AQLTDAGIRLGLSTH---GYYELLRIVQ 318 (437)
T ss_pred HHHHHHHHHHHHHhCCEEEEEC----HHHHHHHcCCCEEEcChHHcchhhh-hhhcCCCCEEEEecC---CHHHHHHHhh
Confidence 3556778899999999988752 3555555 47778899888865443 555556778889875 8899888764
Q ss_pred HHHHcCCCcEEEEeecCCCCCCC-----CCCCchhHHHHHh-c---------CCCEEEeCCCCCCCCCCCccCCCCccCC
Q 022892 152 KVRLAGNPNVMVCERGTMFGYND-----LIVDPRNLEWMRE-A---------NCPVVADVTHSLQQPAGKKLDGGGVASG 216 (290)
Q Consensus 152 ~i~~~Gn~~i~L~~~gs~~~y~~-----~~~dL~~i~~lk~-~---------~~pV~~D~sHs~~~~~~~~~~~~~~~~~ 216 (290)
.|-+.|.+-+- |+.+. .-+-+..+..+++ . ++||+. + |
T Consensus 319 ----~gaDYI~lGPI---FpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVA-----I---------------G 371 (437)
T PRK12290 319 ----IQPSYIALGHI---FPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVA-----I---------------G 371 (437)
T ss_pred ----cCCCEEEECCc---cCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEE-----E---------------C
Confidence 45566666442 22111 1233444444444 3 688754 1 2
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 217 GLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 217 g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
|.. ..-.....+.||+|+-+=+-++
T Consensus 372 GI~---~~Ni~~vl~aGa~GVAVVSAI~ 396 (437)
T PRK12290 372 GID---QSNAEQVWQCGVSSLAVVRAIT 396 (437)
T ss_pred CcC---HHHHHHHHHcCCCEEEEehHhh
Confidence 310 2223345688999988877765
No 458
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=71.90 E-value=61 Score=30.42 Aligned_cols=97 Identities=24% Similarity=0.240 Sum_probs=56.9
Q ss_pred CCHHHHHHH---HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEE
Q 022892 118 RQTDLLVAA---AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVV 193 (290)
Q Consensus 118 ~n~~lL~~~---a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~ 193 (290)
.+.++|+++ .+-|--|+-=+... + -.+..+...|.. +++-=|+--+...-..|..++..+++ .++||+
T Consensus 122 D~~etl~Aae~Lv~eGF~VlPY~~~D--~----v~a~rLed~Gc~--aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVi 193 (267)
T CHL00162 122 DPIGTLKAAEFLVKKGFTVLPYINAD--P----MLAKHLEDIGCA--TVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVI 193 (267)
T ss_pred ChHHHHHHHHHHHHCCCEEeecCCCC--H----HHHHHHHHcCCe--EEeeccCcccCCCCCCCHHHHHHHHHcCCCcEE
Confidence 455666543 33344444333322 1 233445666763 34433431122333457788888888 889999
Q ss_pred EeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCC
Q 022892 194 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 194 ~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t 244 (290)
+|.-=+. +.=+..|+.+|+||+++-+-+.
T Consensus 194 vdAGIgt----------------------~sDa~~AmElGaDgVL~nSaIa 222 (267)
T CHL00162 194 IDAGIGT----------------------PSEASQAMELGASGVLLNTAVA 222 (267)
T ss_pred EeCCcCC----------------------HHHHHHHHHcCCCEEeecceee
Confidence 8744331 4445678999999999988873
No 459
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=71.76 E-value=98 Score=29.76 Aligned_cols=155 Identities=17% Similarity=0.125 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcCCe----EEEeCCCCCCHHHHHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKI----INIKKGQFCASSVMVN 148 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~~P----VilstG~~~tl~e~~~ 148 (290)
.+....+.+...+.|++.+= +.....+ . -.-+..|..-..+.+.++++...-++ +++--|.. +.++++.
T Consensus 23 ~~~~~~ia~~Ld~aGV~~IE-vg~g~gl---~--g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~-~~~dl~~ 95 (333)
T TIGR03217 23 IEQVRAIAAALDEAGVDAIE-VTHGDGL---G--GSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIG-TVHDLKA 95 (333)
T ss_pred HHHHHHHHHHHHHcCCCEEE-EecCCCC---C--CccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCcc-CHHHHHH
Confidence 46677777778899988763 3221110 0 00112233334456666666543222 23333444 8888877
Q ss_pred HHHHHHHcCCCcEEEE-eecCCCCCCCCCCCchhHHHHHhcCCCEEEeC--CCCCCCCCCCccCCCCccCCCCcccHHHH
Q 022892 149 SAEKVRLAGNPNVMVC-ERGTMFGYNDLIVDPRNLEWMREANCPVVADV--THSLQQPAGKKLDGGGVASGGLRELIPCI 225 (290)
Q Consensus 149 Ave~i~~~Gn~~i~L~-~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~--sHs~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (290)
|.+ .|-.-+.+. ||. ..+.-...+...|+.|+.|.+.. +|.. ..+.+...
T Consensus 96 a~~----~gvd~iri~~~~~------e~d~~~~~i~~ak~~G~~v~~~l~~s~~~-----------------~~e~l~~~ 148 (333)
T TIGR03217 96 AYD----AGARTVRVATHCT------EADVSEQHIGMARELGMDTVGFLMMSHMT-----------------PPEKLAEQ 148 (333)
T ss_pred HHH----CCCCEEEEEeccc------hHHHHHHHHHHHHHcCCeEEEEEEcccCC-----------------CHHHHHHH
Confidence 764 455444433 221 11122456666666677654422 2321 24556677
Q ss_pred HHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 226 ARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 226 a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
++.+...||+.+ .+ +|..-.+.|+++.++++.+++.
T Consensus 149 a~~~~~~Ga~~i----~i------~DT~G~~~P~~v~~~v~~l~~~ 184 (333)
T TIGR03217 149 AKLMESYGADCV----YI------VDSAGAMLPDDVRDRVRALKAV 184 (333)
T ss_pred HHHHHhcCCCEE----EE------ccCCCCCCHHHHHHHHHHHHHh
Confidence 777888999832 33 7999999999999999998863
No 460
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=71.76 E-value=81 Score=28.85 Aligned_cols=158 Identities=16% Similarity=0.103 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhc--CCe--EEEeCCCCCCHHHHHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKT--GKI--INIKKGQFCASSVMVN 148 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~--~~P--VilstG~~~tl~e~~~ 148 (290)
.+....+.+...+.|++.+= +..+.... ...+ +++.......+.++.+.+. +.. +++-.+.. ..++++.
T Consensus 21 ~~~k~~i~~~L~~~Gv~~iE-vg~~~~~~----~~~~-~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~-~~~~i~~ 93 (263)
T cd07943 21 LEQVRAIARALDAAGVPLIE-VGHGDGLG----GSSL-NYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIG-TVDDLKM 93 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEE-eecCCCCC----Cccc-ccCCCCCChHHHHHHHHHhccCCEEEEEecCCcc-CHHHHHH
Confidence 35566777778889988653 32111100 0111 1111112234555655332 223 33333444 6777766
Q ss_pred HHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHH
Q 022892 149 SAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIART 228 (290)
Q Consensus 149 Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~a 228 (290)
|.+ .|-+-+.++-..+. .+ .-...+...|+.|+.|.+....+- .-.++.+..++..
T Consensus 94 a~~----~g~~~iri~~~~s~--~~---~~~~~i~~ak~~G~~v~~~~~~~~---------------~~~~~~~~~~~~~ 149 (263)
T cd07943 94 AAD----LGVDVVRVATHCTE--AD---VSEQHIGAARKLGMDVVGFLMMSH---------------MASPEELAEQAKL 149 (263)
T ss_pred HHH----cCCCEEEEEechhh--HH---HHHHHHHHHHHCCCeEEEEEEecc---------------CCCHHHHHHHHHH
Confidence 643 46555555433221 11 112344445556766655432220 0124556677778
Q ss_pred HHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 022892 229 AIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 271 (290)
Q Consensus 229 Ava~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~~ 271 (290)
+.++|++. | - ++|..-.+.|+++.++++.+++-
T Consensus 150 ~~~~G~d~--i--~------l~DT~G~~~P~~v~~lv~~l~~~ 182 (263)
T cd07943 150 MESYGADC--V--Y------VTDSAGAMLPDDVRERVRALREA 182 (263)
T ss_pred HHHcCCCE--E--E------EcCCCCCcCHHHHHHHHHHHHHh
Confidence 88899983 2 1 37888899999999999998863
No 461
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=71.72 E-value=25 Score=38.14 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh---------h
Q 022892 36 AKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK---------V 106 (290)
Q Consensus 36 Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~---------~ 106 (290)
-..++++|++.|+|+|-- |+|+...=.++.+.|.+.||.|+--. ++.++.+.+ .
T Consensus 69 IdeII~iAk~~gaDaIhP---------------GYGfLSEn~efA~~c~eaGI~FIGP~--~e~ld~~GdKv~Ar~~A~~ 131 (1149)
T COG1038 69 IDEIIRIAKRSGADAIHP---------------GYGFLSENPEFARACAEAGITFIGPK--PEVLDMLGDKVKARNAAIK 131 (1149)
T ss_pred HHHHHHHHHHcCCCeecC---------------CcccccCCHHHHHHHHHcCCEEeCCC--HHHHHHhccHHHHHHHHHH
Confidence 356788889999999964 33332334567788888888887521 222333222 1
Q ss_pred cceecccCC--ccCCHHH-HHHHHhcCCeEEEeCCCCC---------CHHHHHHHHH
Q 022892 107 ADIIQIPAF--LCRQTDL-LVAAAKTGKIINIKKGQFC---------ASSVMVNSAE 151 (290)
Q Consensus 107 ~d~~kIgs~--~~~n~~l-L~~~a~~~~PVilstG~~~---------tl~e~~~Ave 151 (290)
+..=-|++. .....+- ++.+...|.||++|-...+ +.+++..+++
T Consensus 132 agvPvipgt~~~~~~~ee~~~fa~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~ 188 (1149)
T COG1038 132 AGVPVIPGTDGPIETIEEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFE 188 (1149)
T ss_pred cCCCccCCCCCCcccHHHHHHHHHhcCCcEEEEEccCCCccceeeecCHHHHHHHHH
Confidence 222223332 2233443 3445668999999964432 6677777765
No 462
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=71.72 E-value=63 Score=32.88 Aligned_cols=130 Identities=14% Similarity=0.147 Sum_probs=83.9
Q ss_pred HHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC---CcEEEeecCcccHHHHhh---hcceec
Q 022892 38 HIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD---IPIVTDVHETVQCEEVGK---VADIIQ 111 (290)
Q Consensus 38 ~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G---i~~~s~~~d~~~~~~l~~---~~d~~k 111 (290)
+-++.+.+.|+|.|..++-.. .+.+.+++++..+.| +++++-+-.++.++-+++ ..|-+=
T Consensus 179 ~dl~f~~~~gvD~vA~SFVr~--------------~~Dv~~~R~~l~~~~~~~~~iiaKIE~~eav~NldeIi~~SDGIM 244 (477)
T COG0469 179 EDLKFGLEQGVDFVALSFVRN--------------AEDVEEVREILAETGGRDVKIIAKIENQEAVDNLDEIIEASDGIM 244 (477)
T ss_pred HHHHHHHhcCCCEEEEecCCC--------------HHHHHHHHHHHHHhCCCCceEEEeecCHHHHhHHHHHHHhcCceE
Confidence 334455556888876643221 467888887775554 569999999988887776 367776
Q ss_pred ccCCcc-----------CCHHHHHHHHhcCCeEEEeCCCCC--------CHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Q 022892 112 IPAFLC-----------RQTDLLVAAAKTGKIINIKKGQFC--------ASSVMVNSAEKVRLAGNPNVMVCERGTMFGY 172 (290)
Q Consensus 112 Igs~~~-----------~n~~lL~~~a~~~~PVilstG~~~--------tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y 172 (290)
|+=+++ -|-.+++.+=+.|||||..|-|-- |=.|+-..+..+. .|.+-++|-.-+..-.|
T Consensus 245 VARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvl-DGtDAvMLS~ETA~G~y 323 (477)
T COG0469 245 VARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVL-DGTDAVMLSGETAAGKY 323 (477)
T ss_pred EEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHH-hCCceeeechhhhcCCC
Confidence 666665 345566777789999999998742 3344444444444 46666666444433237
Q ss_pred CCCCCCchhHHHHHh
Q 022892 173 NDLIVDPRNLEWMRE 187 (290)
Q Consensus 173 ~~~~~dL~~i~~lk~ 187 (290)
|- .++.+|.+
T Consensus 324 Pv-----eaV~~M~~ 333 (477)
T COG0469 324 PV-----EAVATMAR 333 (477)
T ss_pred HH-----HHHHHHHH
Confidence 73 46666643
No 463
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=71.60 E-value=22 Score=34.57 Aligned_cols=100 Identities=17% Similarity=0.061 Sum_probs=0.0
Q ss_pred CccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cC--CC
Q 022892 115 FLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN--CP 191 (290)
Q Consensus 115 ~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~--~p 191 (290)
...+.-.+=.....++.||++|==++ .+++..+++ .|-.-|.+-..|.. +.+.-..-+.+++.+++ .+ +|
T Consensus 210 ~~~~w~~i~~~~~~~~~pvivKgv~~--~~da~~~~~----~G~~~i~vs~hGGr-~~d~~~~~~~~L~~i~~~~~~~~~ 282 (356)
T PF01070_consen 210 PSLTWDDIEWIRKQWKLPVIVKGVLS--PEDAKRAVD----AGVDGIDVSNHGGR-QLDWGPPTIDALPEIRAAVGDDIP 282 (356)
T ss_dssp TT-SHHHHHHHHHHCSSEEEEEEE-S--HHHHHHHHH----TT-SEEEEESGTGT-SSTTS-BHHHHHHHHHHHHTTSSE
T ss_pred CCCCHHHHHHHhcccCCceEEEeccc--HHHHHHHHh----cCCCEEEecCCCcc-cCccccccccccHHHHhhhcCCee
Q ss_pred EEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 192 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 192 V~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
|++|+.=-. | ..++++ +++||+.+.|-.++
T Consensus 283 i~~dgGir~----------------g-----~Dv~ka-laLGA~~v~igr~~ 312 (356)
T PF01070_consen 283 IIADGGIRR----------------G-----LDVAKA-LALGADAVGIGRPF 312 (356)
T ss_dssp EEEESS--S----------------H-----HHHHHH-HHTT-SEEEESHHH
T ss_pred EEEeCCCCC----------------H-----HHHHHH-HHcCCCeEEEccHH
No 464
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=71.57 E-value=92 Score=29.39 Aligned_cols=173 Identities=14% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh----hcc
Q 022892 33 MRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK----VAD 108 (290)
Q Consensus 33 le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~----~~d 108 (290)
+++++.++++|++.+.+++.--+-.. .+-.+++.-....+.++++..+|++----+-.+.+.+.. ..+
T Consensus 26 ~e~~~avi~AAee~~sPvIlq~s~~~--------~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFt 97 (282)
T TIGR01858 26 LETIQAVVETAAEMRSPVILAGTPGT--------FKHAGTEYIVALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGVR 97 (282)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCccH--------HhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCC
Q ss_pred eecccCCcc-------CCHHHHHHHHhcCCeEEEeCCCCCCHHHH-------------HHHHHHHHHcCCCcEEEEeecC
Q 022892 109 IIQIPAFLC-------RQTDLLVAAAKTGKIINIKKGQFCASSVM-------------VNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 109 ~~kIgs~~~-------~n~~lL~~~a~~~~PVilstG~~~tl~e~-------------~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
-+=+-+..+ ......+.+-..|.+|=-.-|.-+.-++- ..|.+.+...|- +..-+--|+
T Consensus 98 SVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~Tgv-D~LAvaiGt 176 (282)
T TIGR01858 98 SAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGV-DSLAVAIGT 176 (282)
T ss_pred EEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCc-CEEecccCc
Q ss_pred CCC-CCC-CCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCC
Q 022892 169 MFG-YND-LIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 235 (290)
Q Consensus 169 ~~~-y~~-~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~ 235 (290)
..+ |.. ..+|+.-+..+++ .++|+++ |+ ++... ...-+.|+..|++
T Consensus 177 ~HG~yk~~p~Ldf~~L~~I~~~~~iPLVl---HG-------------gSG~~-----~e~~~~ai~~Gi~ 225 (282)
T TIGR01858 177 AHGLYKKTPKLDFDRLAEIREVVDVPLVL---HG-------------ASDVP-----DEDVRRTIELGIC 225 (282)
T ss_pred cccCcCCCCccCHHHHHHHHHHhCCCeEE---ec-------------CCCCC-----HHHHHHHHHcCCe
No 465
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=71.56 E-value=75 Score=28.36 Aligned_cols=158 Identities=18% Similarity=0.166 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-eecCcccHHHHhh-hccee
Q 022892 33 MRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT-DVHETVQCEEVGK-VADII 110 (290)
Q Consensus 33 le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s-~~~d~~~~~~l~~-~~d~~ 110 (290)
.+.|.++.+...+.|+.++-.. | +..+-.+.++.+++... ++.+-+ |+.+.++++...+ .++|+
T Consensus 19 ~~~a~~~~~al~~gGi~~iEiT-~-----------~t~~a~~~I~~l~~~~p--~~~vGAGTV~~~e~a~~a~~aGA~Fi 84 (196)
T PF01081_consen 19 PEDAVPIAEALIEGGIRAIEIT-L-----------RTPNALEAIEALRKEFP--DLLVGAGTVLTAEQAEAAIAAGAQFI 84 (196)
T ss_dssp GGGHHHHHHHHHHTT--EEEEE-T-----------TSTTHHHHHHHHHHHHT--TSEEEEES--SHHHHHHHHHHT-SEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEe-c-----------CCccHHHHHHHHHHHCC--CCeeEEEeccCHHHHHHHHHcCCCEE
Confidence 5778888888888888766542 1 11111233444443332 344433 8888888887766 57777
Q ss_pred cccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCC-chhHHHHHh-c
Q 022892 111 QIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD-PRNLEWMRE-A 188 (290)
Q Consensus 111 kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d-L~~i~~lk~-~ 188 (290)
-=+. .|.++++.+-+.+.|++= |.+ |+.|+..|.+ .|.+-+=+ ||...+- ...+..|+. +
T Consensus 85 vSP~---~~~~v~~~~~~~~i~~iP--G~~-TptEi~~A~~----~G~~~vK~--------FPA~~~GG~~~ik~l~~p~ 146 (196)
T PF01081_consen 85 VSPG---FDPEVIEYAREYGIPYIP--GVM-TPTEIMQALE----AGADIVKL--------FPAGALGGPSYIKALRGPF 146 (196)
T ss_dssp EESS-----HHHHHHHHHHTSEEEE--EES-SHHHHHHHHH----TT-SEEEE--------TTTTTTTHHHHHHHHHTTT
T ss_pred ECCC---CCHHHHHHHHHcCCcccC--CcC-CHHHHHHHHH----CCCCEEEE--------ecchhcCcHHHHHHHhccC
Confidence 6664 567888888888887763 555 8999988865 45543333 5554445 556666666 4
Q ss_pred -CCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCC
Q 022892 189 -NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 245 (290)
Q Consensus 189 -~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~ 245 (290)
+++++ ++=++ ...+ ...-.++|+.++.+=+-+.+
T Consensus 147 p~~~~~--ptGGV-------------~~~N--------~~~~l~ag~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 147 PDLPFM--PTGGV-------------NPDN--------LAEYLKAGAVAVGGGSWLFP 181 (196)
T ss_dssp TT-EEE--EBSS---------------TTT--------HHHHHTSTTBSEEEESGGGS
T ss_pred CCCeEE--EcCCC-------------CHHH--------HHHHHhCCCEEEEECchhcC
Confidence 45554 23221 1112 23446678777777666544
No 466
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=71.49 E-value=56 Score=31.12 Aligned_cols=91 Identities=19% Similarity=0.108 Sum_probs=55.6
Q ss_pred CCeEEEeCCC------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCC----------CCCCchhHHHHHh-cCCC
Q 022892 130 GKIINIKKGQ------FCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYND----------LIVDPRNLEWMRE-ANCP 191 (290)
Q Consensus 130 ~~PVilstG~------~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~-~y~~----------~~~dL~~i~~lk~-~~~p 191 (290)
+.||.++-.. ..+++|....++.+...|-. .+=++.|+.. ++.. .-.++.....+|+ .++|
T Consensus 216 d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd-~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iP 294 (338)
T cd04733 216 GFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVD-LVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTP 294 (338)
T ss_pred CCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCC-EEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCC
Confidence 4689987742 24889999999888877743 3333444321 1110 0011344556777 8999
Q ss_pred EEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC-CCEEEEeeeC
Q 022892 192 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG-VDGVFMEVHD 243 (290)
Q Consensus 192 V~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G-A~G~~IEkH~ 243 (290)
|+.+.... . +..+..+++.| +|++.+-+-+
T Consensus 295 Vi~~G~i~-----------------t-----~~~a~~~l~~g~aD~V~lgR~~ 325 (338)
T cd04733 295 LMVTGGFR-----------------T-----RAAMEQALASGAVDGIGLARPL 325 (338)
T ss_pred EEEeCCCC-----------------C-----HHHHHHHHHcCCCCeeeeChHh
Confidence 98865543 2 55677778876 8877766554
No 467
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=71.45 E-value=97 Score=29.63 Aligned_cols=141 Identities=12% Similarity=0.037 Sum_probs=79.5
Q ss_pred CCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCC--CCCcccCCCC---ChhHHHHHHHHHHHhcC
Q 022892 13 AAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKAN--RTSSKSFRGP---GMVEGLKILEKVKIAYD 87 (290)
Q Consensus 13 ~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~--rts~~~~~g~---~~~~~l~~L~~~~~~~G 87 (290)
+.+++ +++.++.- |.+...+.|+.+.+ +|+|.|=...=-..+ |+.. |-+. ..+.-.++++.+.+..+
T Consensus 62 ~~e~p-~~vQl~g~-~p~~~~~aA~~~~~----~g~d~IdlN~gCP~~~v~~~~--~Gs~L~~~p~~~~eiv~avr~~v~ 133 (333)
T PRK11815 62 PEEHP-VALQLGGS-DPADLAEAAKLAED----WGYDEINLNVGCPSDRVQNGR--FGACLMAEPELVADCVKAMKDAVS 133 (333)
T ss_pred CCCCc-EEEEEeCC-CHHHHHHHHHHHHh----cCCCEEEEcCCCCHHHccCCC--eeeHHhcCHHHHHHHHHHHHHHcC
Confidence 34444 44555542 67776777766655 688886443211111 2221 1110 01233445666666678
Q ss_pred CcEEEe--e-cC-cc----c---HHHHhh-hcceecccCCcc---------------CCHHHHHHHHhc--CCeEEEeCC
Q 022892 88 IPIVTD--V-HE-TV----Q---CEEVGK-VADIIQIPAFLC---------------RQTDLLVAAAKT--GKIINIKKG 138 (290)
Q Consensus 88 i~~~s~--~-~d-~~----~---~~~l~~-~~d~~kIgs~~~---------------~n~~lL~~~a~~--~~PVilstG 138 (290)
+|+..- + ++ .. . +..+.+ .++++-|-+++. -+.++++++.+. +.||+..-|
T Consensus 134 ~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGg 213 (333)
T PRK11815 134 IPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGG 213 (333)
T ss_pred CceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECC
Confidence 887762 2 22 11 1 233444 588888877652 246777777653 789999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 022892 139 QFCASSVMVNSAEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 139 ~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs 168 (290)
.. |++++....+ | -+.+.+=|+.
T Consensus 214 I~-s~eda~~~l~-----~-aDgVmIGRa~ 236 (333)
T PRK11815 214 IK-TLEEAKEHLQ-----H-VDGVMIGRAA 236 (333)
T ss_pred cC-CHHHHHHHHh-----c-CCEEEEcHHH
Confidence 88 9999888654 3 3455555554
No 468
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=71.32 E-value=30 Score=33.00 Aligned_cols=87 Identities=10% Similarity=0.073 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCCEEeccccccCCCCC-cccCCCCC---h-hHHHHHHHHHHHhc-CCcEEE--eecCcccHHHHhhhcc
Q 022892 37 KHIKSISTKVGLPLVFKSSFDKANRTS-SKSFRGPG---M-VEGLKILEKVKIAY-DIPIVT--DVHETVQCEEVGKVAD 108 (290)
Q Consensus 37 k~L~~~a~~~G~~~V~~~~~~k~~rts-~~~~~g~~---~-~~~l~~L~~~~~~~-Gi~~~s--~~~d~~~~~~l~~~~d 108 (290)
..+++...++|+++|.-- .||. ...|.+.. + .-.|.++++++++. .||++. .+++.+++..+.+.+|
T Consensus 144 ~~~~~~l~~~G~~~itvH-----gRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~g~d 218 (318)
T TIGR00742 144 CDFVEIVSGKGCQNFIVH-----ARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLSHVD 218 (318)
T ss_pred HHHHHHHHHcCCCEEEEe-----CCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHhCCC
Confidence 344444445799987542 5653 22232110 0 12467788888887 899987 8999998887666899
Q ss_pred eecccCCccCCHHHHHHHHh
Q 022892 109 IIQIPAFLCRQTDLLVAAAK 128 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~ 128 (290)
.+.||-..+.|..+..++..
T Consensus 219 gVMigRgal~nP~if~~~~~ 238 (318)
T TIGR00742 219 GVMVGREAYENPYLLANVDR 238 (318)
T ss_pred EEEECHHHHhCCHHHHHHHH
Confidence 99999999999988888764
No 469
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=71.12 E-value=66 Score=29.93 Aligned_cols=118 Identities=20% Similarity=0.199 Sum_probs=70.6
Q ss_pred CCHHHHHHHHhc---CCeEE-EeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCE
Q 022892 118 RQTDLLVAAAKT---GKIIN-IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPV 192 (290)
Q Consensus 118 ~n~~lL~~~a~~---~~PVi-lstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV 192 (290)
.+...++++-.+ |.-|+ ..+. ++.+.+...+ .|..-+ +-=|+--+-..-..|...|..+++ .++||
T Consensus 108 d~~~tv~aa~~L~~~Gf~vlpyc~d---d~~~ar~l~~----~G~~~v--mPlg~pIGsg~Gi~~~~~I~~I~e~~~vpV 178 (248)
T cd04728 108 DPIETLKAAEILVKEGFTVLPYCTD---DPVLAKRLED----AGCAAV--MPLGSPIGSGQGLLNPYNLRIIIERADVPV 178 (248)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHH----cCCCEe--CCCCcCCCCCCCCCCHHHHHHHHHhCCCcE
Confidence 455677777666 88888 7766 6777666544 354333 111110011122346677788888 78999
Q ss_pred EEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHH-HHHHHHHHHHH
Q 022892 193 VADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRN-LEELLEELVAI 271 (290)
Q Consensus 193 ~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~-l~~lv~~ir~~ 271 (290)
+.|.-=+ . ++-+..|..+||+|+++-+-++ .+-+|.. -+.|...+..=
T Consensus 179 I~egGI~-----------------t-----peda~~AmelGAdgVlV~SAIt---------~a~dP~~ma~af~~Av~aG 227 (248)
T cd04728 179 IVDAGIG-----------------T-----PSDAAQAMELGADAVLLNTAIA---------KAKDPVAMARAFKLAVEAG 227 (248)
T ss_pred EEeCCCC-----------------C-----HHHHHHHHHcCCCEEEEChHhc---------CCCCHHHHHHHHHHHHHHH
Confidence 9864322 1 5667788999999999998875 1223444 34455555554
Q ss_pred HHHh
Q 022892 272 AKVS 275 (290)
Q Consensus 272 ~~~l 275 (290)
+.+.
T Consensus 228 r~a~ 231 (248)
T cd04728 228 RLAY 231 (248)
T ss_pred HHHH
Confidence 4443
No 470
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=71.08 E-value=77 Score=28.28 Aligned_cols=79 Identities=11% Similarity=0.071 Sum_probs=53.2
Q ss_pred HHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecc-cCCccCCHHHHHHHHh-c--CCeEEEeCCCCCCHHHHHHHHHH
Q 022892 78 ILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQI-PAFLCRQTDLLVAAAK-T--GKIINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 78 ~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kI-gs~~~~n~~lL~~~a~-~--~~PVilstG~~~tl~e~~~Ave~ 152 (290)
.+.++|.+.|++++-.+++++++....+ .+|++|+ ++.. ...+.++.+.+ . .+|++-.-|. +++.+. ++
T Consensus 95 ~v~~~~~~~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa~~-~G~~~l~~l~~~~~~~ipvvaiGGI--~~~n~~---~~ 168 (206)
T PRK09140 95 EVIRRAVALGMVVMPGVATPTEAFAALRAGAQALKLFPASQ-LGPAGIKALRAVLPPDVPVFAVGGV--TPENLA---PY 168 (206)
T ss_pred HHHHHHHHCCCcEEcccCCHHHHHHHHHcCCCEEEECCCCC-CCHHHHHHHHhhcCCCCeEEEECCC--CHHHHH---HH
Confidence 4667788999999999999999888776 6999998 3322 34667777654 3 3787666664 454433 33
Q ss_pred HHHcCCCcEEE
Q 022892 153 VRLAGNPNVMV 163 (290)
Q Consensus 153 i~~~Gn~~i~L 163 (290)
+ +.|..-+.+
T Consensus 169 ~-~aGa~~vav 178 (206)
T PRK09140 169 L-AAGAAGFGL 178 (206)
T ss_pred H-HCCCeEEEE
Confidence 3 356544443
No 471
>PLN02433 uroporphyrinogen decarboxylase
Probab=71.02 E-value=87 Score=29.91 Aligned_cols=138 Identities=14% Similarity=0.097 Sum_probs=63.3
Q ss_pred HHHHHcCCCEEec-cccccCCCCCcccCCCCChhHHHHHHHHHHHhc--CCcEEEeecCc-ccHHHHhh-hcceecccCC
Q 022892 41 SISTKVGLPLVFK-SSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY--DIPIVTDVHET-VQCEEVGK-VADIIQIPAF 115 (290)
Q Consensus 41 ~~a~~~G~~~V~~-~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~--Gi~~~s~~~d~-~~~~~l~~-~~d~~kIgs~ 115 (290)
+...++|++++.. .. +. ..-|+..|+.+. ...++.+.+..++. +++++--+... ..++.+.+ .++.+-+...
T Consensus 186 ~~~ieaGa~~i~i~d~-~~-~~lsp~~f~ef~-~P~~k~i~~~i~~~~~~~~~ilh~cG~~~~~~~~~~~~~~~i~~d~~ 262 (345)
T PLN02433 186 DYQIDAGAQVVQIFDS-WA-GHLSPVDFEEFS-KPYLEKIVDEVKARHPDVPLILYANGSGGLLERLAGTGVDVIGLDWT 262 (345)
T ss_pred HHHHHcCCCEEEEecC-cc-ccCCHHHHHHHH-HHHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHhcCCCEEEcCCC
Confidence 3344579997732 22 11 233333343222 22344444555544 56555433332 33555555 4565555443
Q ss_pred ccCCHHHHHHHHhcCC---------eEEEeCCCCCCHHHHHHHHHHHHHcC-CCc-EEEEeecCCCCCCCCCCCchhHHH
Q 022892 116 LCRQTDLLVAAAKTGK---------IINIKKGQFCASSVMVNSAEKVRLAG-NPN-VMVCERGTMFGYNDLIVDPRNLEW 184 (290)
Q Consensus 116 ~~~n~~lL~~~a~~~~---------PVilstG~~~tl~e~~~Ave~i~~~G-n~~-i~L~~~gs~~~y~~~~~dL~~i~~ 184 (290)
.+.. +.....+. |+++ + +|.+++.+.+..+.+.+ ... |.=.-||..+..|. -|++++..
T Consensus 263 --~dl~--e~~~~~g~~~~l~GNi~p~ll-~---gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~~tp~--eNi~a~v~ 332 (345)
T PLN02433 263 --VDMA--DARRRLGSDVAVQGNVDPAVL-F---GSKEAIEKEVRDVVKKAGPQGHILNLGHGVLVGTPE--ENVAHFFD 332 (345)
T ss_pred --CCHH--HHHHHhCCCeEEEeCCCchhh-C---CCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCCH--HHHHHHHH
Confidence 3332 22222232 3333 2 48899999988777653 222 33333555332332 24444433
Q ss_pred H-HhcCCC
Q 022892 185 M-REANCP 191 (290)
Q Consensus 185 l-k~~~~p 191 (290)
. ++++.+
T Consensus 333 av~~~~~~ 340 (345)
T PLN02433 333 VARELRYE 340 (345)
T ss_pred HHHHhChh
Confidence 3 334444
No 472
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=70.89 E-value=1.2e+02 Score=30.33 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHH-Hhh--hcceecccCCcc--CCHHHHHHHHh---cCC----eEEEeCCCCC
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEE-VGK--VADIIQIPAFLC--RQTDLLVAAAK---TGK----IINIKKGQFC 141 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~-l~~--~~d~~kIgs~~~--~n~~lL~~~a~---~~~----PVilstG~~~ 141 (290)
...++|+-||+-+|+|+-.- .++.+++. +.+ .+|++-|-.--. .|...+.++.. ... =+.||.++-
T Consensus 247 GA~EQLk~Ya~im~vp~~vv-~~~~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K- 324 (407)
T COG1419 247 GAVEQLKTYADIMGVPLEVV-YSPKELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK- 324 (407)
T ss_pred hHHHHHHHHHHHhCCceEEe-cCHHHHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-
Confidence 56888999999999998763 34444433 333 478887765544 34334444332 222 356676654
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEee--cCCCCCCCCCCCchhHHHHHhcCCCEEEeCCC
Q 022892 142 ASSVMVNSAEKVRLAGNPNVMVCER--GTMFGYNDLIVDPRNLEWMREANCPVVADVTH 198 (290)
Q Consensus 142 tl~e~~~Ave~i~~~Gn~~i~L~~~--gs~~~y~~~~~dL~~i~~lk~~~~pV~~D~sH 198 (290)
.+++..+++.+..-+-..+++.-= +++ |. +.+..|.+.++||.| -+-
T Consensus 325 -~~dlkei~~~f~~~~i~~~I~TKlDET~s--~G------~~~s~~~e~~~PV~Y-vT~ 373 (407)
T COG1419 325 -YEDLKEIIKQFSLFPIDGLIFTKLDETTS--LG------NLFSLMYETRLPVSY-VTN 373 (407)
T ss_pred -hHHHHHHHHHhccCCcceeEEEcccccCc--hh------HHHHHHHHhCCCeEE-EeC
Confidence 889999999887666556666421 111 22 234445568899988 443
No 473
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=70.88 E-value=1.1e+02 Score=29.91 Aligned_cols=173 Identities=17% Similarity=0.211 Sum_probs=96.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCcEEEeecCcc----------cHHHHhh-hcceecccCCccCCH--------HH----H
Q 022892 67 FRGPGMVEGLKILEKVKIAYDIPIVTDVHETV----------QCEEVGK-VADIIQIPAFLCRQT--------DL----L 123 (290)
Q Consensus 67 ~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~----------~~~~l~~-~~d~~kIgs~~~~n~--------~l----L 123 (290)
|.|+. -|+.-+++.+.-.+=|.+.|+|.+. .++.+.+ .+|.+|.-...-.+. .+ +
T Consensus 111 f~GP~--fGi~g~R~~~gv~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av 188 (367)
T cd08205 111 FPGPR--FGIEGLRRLLGVHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAV 188 (367)
T ss_pred CCCCC--CCchhHHHHhCCCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHH
Confidence 55553 4666777777788999999999987 2223333 477777654433331 11 1
Q ss_pred HHHH-hcCC-eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCC
Q 022892 124 VAAA-KTGK-IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSL 200 (290)
Q Consensus 124 ~~~a-~~~~-PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~ 200 (290)
+++. ++|. ++++-+... +.+|+.+=++.+.+.|.+-+++ ..-.|++ .++..|++ .++||.. |-.
T Consensus 189 ~~a~~~TG~~~~y~~nit~-~~~e~i~~a~~a~~~Gad~vmv--~~~~~g~-------~~~~~l~~~~~lpi~~---H~a 255 (367)
T cd08205 189 RRANEETGRKTLYAPNITG-DPDELRRRADRAVEAGANALLI--NPNLVGL-------DALRALAEDPDLPIMA---HPA 255 (367)
T ss_pred HHHHHhhCCcceEEEEcCC-CHHHHHHHHHHHHHcCCCEEEE--ecccccc-------cHHHHHHhcCCCeEEE---ccC
Confidence 2222 3444 777777776 6799999889889899753333 3222222 34555666 6788744 321
Q ss_pred CCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 022892 201 QQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELV 269 (290)
Q Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir 269 (290)
. -|+. ..+.. .|... ....+.+-..|+|.++.-.+ -+++..+++++.++.+.++
T Consensus 256 ~-~ga~---~~~~~-~g~~~--~~~~kl~RlaGad~~~~~~~--------~gk~~~~~~~~~~la~~~~ 309 (367)
T cd08205 256 F-AGAL---SRSPD-YGSHF--LLLGKLMRLAGADAVIFPGP--------GGRFPFSREECLAIARACR 309 (367)
T ss_pred c-cccc---ccCCC-CcCCH--HHHHHHHHHcCCCccccCCC--------ccCcCCCHHHHHHHHHHHh
Confidence 0 0000 00000 12111 23455566789994433222 2477778888888777543
No 474
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=70.81 E-value=89 Score=28.90 Aligned_cols=154 Identities=11% Similarity=-0.048 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHHHHhcC---Ce-EEEeCCCCCCHHHHHH
Q 022892 73 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTG---KI-INIKKGQFCASSVMVN 148 (290)
Q Consensus 73 ~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~~a~~~---~P-VilstG~~~tl~e~~~ 148 (290)
.+....+.+...+.||+++=--| +..-+ -...++.-....+.++.+.+.. .+ ..+.+......+++..
T Consensus 19 ~~~~~~ia~~L~~~GVd~IEvG~-~~~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (266)
T cd07944 19 DEFVKAIYRALAAAGIDYVEIGY-RSSPE-------KEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEP 90 (266)
T ss_pred HHHHHHHHHHHHHCCCCEEEeec-CCCCc-------cccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHH
Confidence 45566677778888888763222 10000 0011111222344455554432 22 3334443335666666
Q ss_pred HHHHHHHcCCCcEEEEeecCCCCCCCCCCC--chhHHHHHhcCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHH
Q 022892 149 SAEKVRLAGNPNVMVCERGTMFGYNDLIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIA 226 (290)
Q Consensus 149 Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~d--L~~i~~lk~~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a 226 (290)
|.+ .|-.-+.+... ...++ ...+...|+.|+.|.+...++. .-..+.+..++
T Consensus 91 a~~----~gv~~iri~~~-------~~~~~~~~~~i~~ak~~G~~v~~~~~~a~---------------~~~~~~~~~~~ 144 (266)
T cd07944 91 ASG----SVVDMIRVAFH-------KHEFDEALPLIKAIKEKGYEVFFNLMAIS---------------GYSDEELLELL 144 (266)
T ss_pred Hhc----CCcCEEEEecc-------cccHHHHHHHHHHHHHCCCeEEEEEEeec---------------CCCHHHHHHHH
Confidence 533 33333444321 11122 2334444545676666444431 01245566777
Q ss_pred HHHHHcCCCEEEEeeeCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 022892 227 RTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 270 (290)
Q Consensus 227 ~aAva~GA~G~~IEkH~t~dka~~D~~~sl~p~~l~~lv~~ir~ 270 (290)
+.+..+|++.+. ++|-.-.+.|+++.++++.+++
T Consensus 145 ~~~~~~g~~~i~----------l~DT~G~~~P~~v~~lv~~l~~ 178 (266)
T cd07944 145 ELVNEIKPDVFY----------IVDSFGSMYPEDIKRIISLLRS 178 (266)
T ss_pred HHHHhCCCCEEE----------EecCCCCCCHHHHHHHHHHHHH
Confidence 777888888432 2688888999999999888875
No 475
>PLN02428 lipoic acid synthase
Probab=70.66 E-value=19 Score=34.98 Aligned_cols=73 Identities=10% Similarity=0.148 Sum_probs=51.5
Q ss_pred CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE-ee
Q 022892 16 PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT-DV 94 (290)
Q Consensus 16 ~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s-~~ 94 (290)
...+|.|.+ |+.+...+..+.|.++ |++.+.+..|-. |-....+...+--.+.++++++++.++|...+. -|
T Consensus 250 kSg~MvGLG--ET~Edv~e~l~~Lrel----gvd~vtigqyL~-Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp 322 (349)
T PLN02428 250 KTSIMLGLG--ETDEEVVQTMEDLRAA----GVDVVTFGQYLR-PTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGP 322 (349)
T ss_pred EEeEEEecC--CCHHHHHHHHHHHHHc----CCCEEeeccccC-CCcceeeeecccCHHHHHHHHHHHHHcCCceEEecC
Confidence 458899995 7999999999999985 999998855542 311111112221257899999999999997665 44
Q ss_pred c
Q 022892 95 H 95 (290)
Q Consensus 95 ~ 95 (290)
+
T Consensus 323 ~ 323 (349)
T PLN02428 323 L 323 (349)
T ss_pred c
Confidence 4
No 476
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=70.62 E-value=1.1e+02 Score=29.97 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=85.7
Q ss_pred hcCCCCeEEEEccCCcc--CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCC
Q 022892 11 LKAAEPFFLLAGPNVIE--SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDI 88 (290)
Q Consensus 11 i~~~~~~~iIAgpcsie--n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi 88 (290)
||-+.| ..|--.+.-. |.+..++..++|.+ +|+++|+...-+ .+..+.|.+.+++..+
T Consensus 22 iGg~~P-i~VQSMt~t~T~Dv~atv~Qi~~L~~----aGceiVRvav~~---------------~~~a~al~~I~~~~~i 81 (360)
T PRK00366 22 IGGDAP-IVVQSMTNTDTADVEATVAQIKRLAR----AGCEIVRVAVPD---------------MEAAAALPEIKKQLPV 81 (360)
T ss_pred ECCCCc-EEEEecCCCCchhHHHHHHHHHHHHH----cCCCEEEEccCC---------------HHHHHhHHHHHHcCCC
Confidence 444444 4454444432 34555666666655 699999875322 4667788888889999
Q ss_pred cEEEeecCc-ccHHHHhh-hcceecccCCccCC-H----HHHHHHHhcCCeEEEeCCCCCCHH-------------HHHH
Q 022892 89 PIVTDVHET-VQCEEVGK-VADIIQIPAFLCRQ-T----DLLVAAAKTGKIINIKKGQFCASS-------------VMVN 148 (290)
Q Consensus 89 ~~~s~~~d~-~~~~~l~~-~~d~~kIgs~~~~n-~----~lL~~~a~~~~PVilstG~~~tl~-------------e~~~ 148 (290)
|+++++|-- ..+-...+ .+|.+-|-.+++.. . ++++.+-..++||=+=.+.. |++ -+..
T Consensus 82 PlvADIHFd~~lAl~a~~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~G-SL~~~~~~~yg~~t~eamve 160 (360)
T PRK00366 82 PLVADIHFDYRLALAAAEAGADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAG-SLEKDLLEKYGEPTPEALVE 160 (360)
T ss_pred CEEEecCCCHHHHHHHHHhCCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCc-cChHHHHHHcCCCCHHHHHH
Confidence 999998644 43333444 59999999999966 3 34455556788876655443 332 2222
Q ss_pred -H---HHHHHHcCCCcEEEEeecC
Q 022892 149 -S---AEKVRLAGNPNVMVCERGT 168 (290)
Q Consensus 149 -A---ve~i~~~Gn~~i~L~~~gs 168 (290)
| ++.+.+.|-.++++-.-.|
T Consensus 161 SAl~~~~~le~~~f~~iviS~KsS 184 (360)
T PRK00366 161 SALRHAKILEELGFDDIKISVKAS 184 (360)
T ss_pred HHHHHHHHHHHCCCCcEEEEEEcC
Confidence 2 3356666777777755544
No 477
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=70.52 E-value=78 Score=30.37 Aligned_cols=92 Identities=18% Similarity=0.092 Sum_probs=56.0
Q ss_pred CCeEEEeCCCC------CCHHHHHHHHHHHHHcCC-CcEEEEeecCCC-C----------CCCCCCCchhHHHHHh-cCC
Q 022892 130 GKIINIKKGQF------CASSVMVNSAEKVRLAGN-PNVMVCERGTMF-G----------YNDLIVDPRNLEWMRE-ANC 190 (290)
Q Consensus 130 ~~PVilstG~~------~tl~e~~~Ave~i~~~Gn-~~i~L~~~gs~~-~----------y~~~~~dL~~i~~lk~-~~~ 190 (290)
..||.++-+.. .+++|....++.+...|. +-+++ +.|... . |.....++.....+|+ .++
T Consensus 208 ~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~v-s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~i 286 (343)
T cd04734 208 DFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNV-SAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDL 286 (343)
T ss_pred CCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEe-CCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCC
Confidence 34677766652 268899988888888774 33444 444321 0 1111234555666777 789
Q ss_pred CEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC-CCEEEEeeeCC
Q 022892 191 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG-VDGVFMEVHDD 244 (290)
Q Consensus 191 pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~G-A~G~~IEkH~t 244 (290)
||++..+-. . +..+..+++.| +|++++=+-+-
T Consensus 287 pvi~~G~i~-----------------~-----~~~~~~~l~~~~~D~V~~gR~~l 319 (343)
T cd04734 287 PVFHAGRIR-----------------D-----PAEAEQALAAGHADMVGMTRAHI 319 (343)
T ss_pred CEEeeCCCC-----------------C-----HHHHHHHHHcCCCCeeeecHHhH
Confidence 998844322 1 45566777765 99888877653
No 478
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=70.32 E-value=22 Score=28.20 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh
Q 022892 33 MRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK 105 (290)
Q Consensus 33 le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~ 105 (290)
-+.-..|+.++..+|..++-...... ++..|..|-|.| -+.++++.+++.++.++. ..++|.+..-+++
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~~~q~~-~~~~p~~~iG~G---K~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~ 77 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGTVVQKR-RKPDPKTYIGSG---KVEEIKELIEELDADLVVFDNELSPSQQRNLEK 77 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEecC-CCCCcceeechh---HHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHH
Confidence 34455666666779987765443321 223333454444 577788888777665544 6667766666654
No 479
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=70.24 E-value=38 Score=31.99 Aligned_cols=109 Identities=16% Similarity=0.133 Sum_probs=54.0
Q ss_pred HHHHHcCCCEEecccccc-CCCCCcccCCCCChhHHHHHHHHHHHhc--CCcEE--EeecCcccHHHHhh-hcceecccC
Q 022892 41 SISTKVGLPLVFKSSFDK-ANRTSSKSFRGPGMVEGLKILEKVKIAY--DIPIV--TDVHETVQCEEVGK-VADIIQIPA 114 (290)
Q Consensus 41 ~~a~~~G~~~V~~~~~~k-~~rts~~~~~g~~~~~~l~~L~~~~~~~--Gi~~~--s~~~d~~~~~~l~~-~~d~~kIgs 114 (290)
+...++|++++. .++. +..-|+..|+.+- ..-++++.+..++. |++++ +.-. ...++.+.+ .++.+.+..
T Consensus 184 ~~~ieaGad~i~--i~d~~~~~lsp~~f~ef~-~P~~k~i~~~i~~~~~~~~ilh~cg~~-~~~~~~~~~~~~~~~s~d~ 259 (335)
T cd00717 184 KAQIEAGAQAVQ--IFDSWAGALSPEDFEEFV-LPYLKRIIEEVKKRLPGVPVILFAKGA-GGLLEDLAQLGADVVGLDW 259 (335)
T ss_pred HHHHHhCCCEEE--EeCcccccCCHHHHHHHH-HHHHHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHhcCCCEEEeCC
Confidence 333447999874 2331 1233333343222 23345555666666 55555 3311 134555655 366665543
Q ss_pred CccCCHHHHHHHHhcCCeEEEeCCCC-----CCHHHHHHHHHHHHHcC
Q 022892 115 FLCRQTDLLVAAAKTGKIINIKKGQF-----CASSVMVNSAEKVRLAG 157 (290)
Q Consensus 115 ~~~~n~~lL~~~a~~~~PVilstG~~-----~tl~e~~~Ave~i~~~G 157 (290)
. .+ +-+.....+.-+.|-=+.. ++.+|+.+.+..+...+
T Consensus 260 ~--~d--l~e~k~~~g~~~~i~Gni~p~~l~~~~e~i~~~v~~~l~~~ 303 (335)
T cd00717 260 R--VD--LDEARKRLGPKVALQGNLDPALLYAPKEAIEKEVKRILKAF 303 (335)
T ss_pred C--CC--HHHHHHHhCCCeEEEeCCChhhhcCCHHHHHHHHHHHHHHh
Confidence 3 23 3233333443333333333 46788999888776653
No 480
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=70.12 E-value=99 Score=29.18 Aligned_cols=85 Identities=19% Similarity=0.183 Sum_probs=53.3
Q ss_pred cceecccCCccCCHHHHHH----HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhH
Q 022892 107 ADIIQIPAFLCRQTDLLVA----AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 182 (290)
Q Consensus 107 ~d~~kIgs~~~~n~~lL~~----~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i 182 (290)
-.=|.||++++.|.+.+++ +-..+.||||..... +.. + .| ++. + ...+
T Consensus 15 ~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~-~~~-------~---~g--------------~~~--~-~~~~ 66 (284)
T PRK12737 15 AEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPG-TFS-------Y---AG--------------TDY--I-VAIA 66 (284)
T ss_pred HcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcc-HHh-------h---CC--------------HHH--H-HHHH
Confidence 4456789999988876654 345788888877654 210 0 01 000 0 1223
Q ss_pred HHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEe
Q 022892 183 EWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 240 (290)
Q Consensus 183 ~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IE 240 (290)
..+.+ ..+||.+--||+. . ......|+.+|...+||-
T Consensus 67 ~~~a~~~~VPValHLDH~~----------------~-----~e~i~~ai~~GftSVMiD 104 (284)
T PRK12737 67 EVAARKYNIPLALHLDHHE----------------D-----LDDIKKKVRAGIRSVMID 104 (284)
T ss_pred HHHHHHCCCCEEEECCCCC----------------C-----HHHHHHHHHcCCCeEEec
Confidence 33444 7889988888873 2 456778888998888775
No 481
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=70.00 E-value=1.2e+02 Score=30.20 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=86.8
Q ss_pred CCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEe
Q 022892 14 AEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTD 93 (290)
Q Consensus 14 ~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~ 93 (290)
..++++|+||..+-...-...+|..+ .+.|..+. .-+-+ .|+ .....+|+.+++..|+++..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l----~~~g~~V~-lItaD--------tyR----~gAveQLk~yae~lgvpv~~- 266 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL----LKQNRTVG-FITTD--------TFR----SGAVEQFQGYADKLDVELIV- 266 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH----HHcCCeEE-EEeCC--------ccC----ccHHHHHHHHhhcCCCCEEe-
Confidence 45678899998753333334444333 33453322 21122 133 23577889999999999874
Q ss_pred ecCcccHHHH----h--hhcceeccc--CCccCCHHHHHHHHhcC---Ce----EEEeCCCCCCHHHHHHHHHHHHHcCC
Q 022892 94 VHETVQCEEV----G--KVADIIQIP--AFLCRQTDLLVAAAKTG---KI----INIKKGQFCASSVMVNSAEKVRLAGN 158 (290)
Q Consensus 94 ~~d~~~~~~l----~--~~~d~~kIg--s~~~~n~~lL~~~a~~~---~P----VilstG~~~tl~e~~~Ave~i~~~Gn 158 (290)
..++..+... . +..|++-|- ++.-.+..+++++.+.. .| ++++.|+ ...++.++++.+...+-
T Consensus 267 ~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~l~i 344 (407)
T PRK12726 267 ATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAEIPI 344 (407)
T ss_pred cCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCcCCC
Confidence 4666655432 2 125666553 33436667777665422 23 3455543 47788777776655555
Q ss_pred CcEEEEeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCC
Q 022892 159 PNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHS 199 (290)
Q Consensus 159 ~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs 199 (290)
..+++.---. ...+.++-.+.. +++||-| .+.+
T Consensus 345 ~glI~TKLDE-------T~~~G~~Lsv~~~tglPIsy-lt~G 378 (407)
T PRK12726 345 DGFIITKMDE-------TTRIGDLYTVMQETNLPVLY-MTDG 378 (407)
T ss_pred CEEEEEcccC-------CCCccHHHHHHHHHCCCEEE-EecC
Confidence 5566543322 122334444444 8999988 5544
No 482
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=69.95 E-value=28 Score=33.19 Aligned_cols=106 Identities=15% Similarity=0.226 Sum_probs=62.6
Q ss_pred CCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccc-cccC-----CCCC--cccCCCCCh-hHHHHHHHHHHHh
Q 022892 15 EPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSS-FDKA-----NRTS--SKSFRGPGM-VEGLKILEKVKIA 85 (290)
Q Consensus 15 ~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~-~~k~-----~rts--~~~~~g~~~-~~~l~~L~~~~~~ 85 (290)
-|+++=-.|.. +.+...+.|+.+.+ +|++.|.... +... +... ...|.|..+ ...+++++++++.
T Consensus 203 ~Pv~vKl~~~~--~~~~~~~ia~~l~~----aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~ 276 (327)
T cd04738 203 VPLLVKIAPDL--SDEELEDIADVALE----HGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKL 276 (327)
T ss_pred CCeEEEeCCCC--CHHHHHHHHHHHHH----cCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHH
Confidence 44444334443 44455666665554 6999876432 2100 0000 011222221 2347778888877
Q ss_pred c--CCcEEE--eecCcccHHHHhh-hcceecccCCccCC-HHHHHHH
Q 022892 86 Y--DIPIVT--DVHETVQCEEVGK-VADIIQIPAFLCRQ-TDLLVAA 126 (290)
Q Consensus 86 ~--Gi~~~s--~~~d~~~~~~l~~-~~d~~kIgs~~~~n-~~lL~~~ 126 (290)
. +++++. -+++.+++..+.. .+|.++||+..+.+ ..+.+.+
T Consensus 277 ~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~i 323 (327)
T cd04738 277 TGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVKRI 323 (327)
T ss_pred hCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHHHHH
Confidence 7 688876 6888888877655 79999999998764 6666554
No 483
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=69.85 E-value=25 Score=33.99 Aligned_cols=74 Identities=9% Similarity=0.034 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCcEEEeecCcccHHHHhh--hcceecccCC--ccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 022892 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGK--VADIIQIPAF--LCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 151 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~--~~d~~kIgs~--~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave 151 (290)
.+..+++++++|+++.+ +++.+.+ .++++-|++. .-...++.+++.+.||.|++.+.++ .+|.++.++
T Consensus 38 ~erA~~~A~~~gi~~y~------~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla--~~Ea~el~~ 109 (343)
T TIGR01761 38 SERSRALAHRLGVPLYC------EVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLH--PRDIQDLLR 109 (343)
T ss_pred HHHHHHHHHHhCCCccC------CHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCC--HHHHHHHHH
Confidence 45667788899998432 3344433 4677777654 3366788888889999999999997 788888888
Q ss_pred HHHHcC
Q 022892 152 KVRLAG 157 (290)
Q Consensus 152 ~i~~~G 157 (290)
..++.|
T Consensus 110 ~A~~~g 115 (343)
T TIGR01761 110 LAERQG 115 (343)
T ss_pred HHHHcC
Confidence 777654
No 484
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=69.73 E-value=52 Score=27.69 Aligned_cols=129 Identities=17% Similarity=0.171 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCCh-hHHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGM-VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGK- 105 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~-~~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~- 105 (290)
+.....+.++++++.+...|+.++....++..-+....... ++. ......+++ ....+..+..+++++..+....+
T Consensus 37 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~a~~~g~~~vh-~~~~~~~~~~~~~-~~~~~~~~g~~~~t~~~~~~~~~~ 114 (196)
T cd00564 37 SARELLELARALRELCRKYGVPLIINDRVDLALAVGADGVH-LGQDDLPVAEARA-LLGPDLIIGVSTHSLEEALRAEEL 114 (196)
T ss_pred CHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCEEe-cCcccCCHHHHHH-HcCCCCEEEeeCCCHHHHHHHhhc
Confidence 45566778888888887788776654433311111110000 000 011122222 23457777778888777766665
Q ss_pred hcceecccCC----------ccCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE
Q 022892 106 VADIIQIPAF----------LCRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC 164 (290)
Q Consensus 106 ~~d~~kIgs~----------~~~n~~lL~~~a~-~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L~ 164 (290)
.+|++.++.. .....++++.+.+ ...||+.--|.. .+++... ...|-.-+++.
T Consensus 115 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~--~~~i~~~----~~~Ga~~i~~g 178 (196)
T cd00564 115 GADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGIT--PENAAEV----LAAGADGVAVI 178 (196)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC--HHHHHHH----HHcCCCEEEEe
Confidence 6999988643 2344577777654 678999988765 5655543 34566555544
No 485
>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=69.72 E-value=15 Score=36.01 Aligned_cols=88 Identities=14% Similarity=0.128 Sum_probs=57.2
Q ss_pred ceecccCCccC-CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCC--cEEEEeecCCCCCCCCCCC--chhH
Q 022892 108 DIIQIPAFLCR-QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNP--NVMVCERGTMFGYNDLIVD--PRNL 182 (290)
Q Consensus 108 d~~kIgs~~~~-n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i~~~Gn~--~i~L~~~gs~~~y~~~~~d--L~~i 182 (290)
.+++||-|+=+ .-..++.+....-||.+|-|.+++.++++.-++.+--. |. .+.|+-|-. +.. .-| ..-+
T Consensus 260 HmlWIGeRTRq~D~AHVe~~rgv~NPig~K~GP~~~~d~ll~l~d~LnP~-nepGRLtLi~RmG---~dK-V~d~LP~li 334 (445)
T COG3200 260 HMLWIGERTRQPDGAHVEFLRGVKNPIGVKIGPSMTPDELLELIDRLNPH-NEPGRLTLIARMG---ADK-VGDRLPPLV 334 (445)
T ss_pred ceeeecccccCCChhHHHHHHhcCCccccccCCCCCHHHHHHHHHhcCCC-CCCceEEeehhhc---chH-HhhhhhHHH
Confidence 37788887653 22334566777889999999999999999988876322 22 477776643 321 111 1333
Q ss_pred HHHHhcCCCEEE--eCCCCC
Q 022892 183 EWMREANCPVVA--DVTHSL 200 (290)
Q Consensus 183 ~~lk~~~~pV~~--D~sHs~ 200 (290)
...+..|.+|++ |+=|+|
T Consensus 335 ~av~~eG~~VvWs~DPMHGN 354 (445)
T COG3200 335 EAVEAEGHQVIWSSDPMHGN 354 (445)
T ss_pred HHHHHcCCceEEecCCCCCc
Confidence 444446889988 555875
No 486
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=69.39 E-value=19 Score=36.49 Aligned_cols=121 Identities=12% Similarity=0.145 Sum_probs=72.9
Q ss_pred HHhhhcCCC-CeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEec----cccccCCCCCcccCCCCChhHHHHH---
Q 022892 7 LFNQLKAAE-PFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFK----SSFDKANRTSSKSFRGPGMVEGLKI--- 78 (290)
Q Consensus 7 ~~~~i~~~~-~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~----~~~~k~~rts~~~~~g~~~~~~l~~--- 78 (290)
+.+.|...- ...||||-++ ..+-|+.|++ +|+|+|+- .+.= -|. .+.+.+ ..++..
T Consensus 258 ~i~~ik~~~p~~~v~agnv~------t~~~a~~l~~----aGad~v~vgig~gsic---tt~--~~~~~~-~p~~~av~~ 321 (479)
T PRK07807 258 ALRAVRALDPGVPIVAGNVV------TAEGTRDLVE----AGADIVKVGVGPGAMC---TTR--MMTGVG-RPQFSAVLE 321 (479)
T ss_pred HHHHHHHHCCCCeEEeeccC------CHHHHHHHHH----cCCCEEEECccCCccc---ccc--cccCCc-hhHHHHHHH
Confidence 445555443 3799999887 4566777777 59999982 2111 111 133444 244554
Q ss_pred HHHHHHhcCCcEEEe--ecCcccHHHHhh-hcceecccCCccCCHHHHHHHH-----hcCCeEEEeCCCCCCHHHHH
Q 022892 79 LEKVKIAYDIPIVTD--VHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAA-----KTGKIINIKKGQFCASSVMV 147 (290)
Q Consensus 79 L~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a-----~~~~PVilstG~~~tl~e~~ 147 (290)
+.++++++|+|++++ +..+.++--... .++...+|+....-.+ .-+ .-|+..=.-+||. |++-+.
T Consensus 322 ~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~E---spg~~~~~~~g~~~k~yrgmg-s~~a~~ 394 (479)
T PRK07807 322 CAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYE---SPGDLMRDRDGRPYKESFGMA-SARAVA 394 (479)
T ss_pred HHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCcc---CCCceEeccCCeEEEEeeccc-cHHHHh
Confidence 455556899999996 555555544433 6888889887663321 111 1245555578999 887665
No 487
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=69.38 E-value=97 Score=28.75 Aligned_cols=153 Identities=17% Similarity=0.227 Sum_probs=97.3
Q ss_pred HHhhhcCCCCeEEEEccCC-------ccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHH
Q 022892 7 LFNQLKAAEPFFLLAGPNV-------IESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKIL 79 (290)
Q Consensus 7 ~~~~i~~~~~~~iIAgpcs-------ien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L 79 (290)
++..+. .+.+.||||.=- +-..-...++|+.+.+ .|+.++.- . |-+..|. ..++.|
T Consensus 32 ~~~~l~-~~~~~vIaEiKr~SPs~G~i~~~~d~~~~A~~y~~----~GA~aISV---l----Te~~~F~-----Gs~~~l 94 (247)
T PRK13957 32 LRDSLK-SRSFSIIAECKRKSPSAGELRADYHPVQIAKTYET----LGASAISV---L----TDQSYFG-----GSLEDL 94 (247)
T ss_pred HHHHHh-CCCCeEEEEEecCCCCCCCcCCCCCHHHHHHHHHH----CCCcEEEE---E----cCCCcCC-----CCHHHH
Confidence 444444 334889997421 2111124566666555 69988722 1 2222233 346778
Q ss_pred HHHHHhcCCcEEEe--ecCcccHHHHhh-hcceecccCCccCC--H-HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHH
Q 022892 80 EKVKIAYDIPIVTD--VHETVQCEEVGK-VADIIQIPAFLCRQ--T-DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKV 153 (290)
Q Consensus 80 ~~~~~~~Gi~~~s~--~~d~~~~~~l~~-~~d~~kIgs~~~~n--~-~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~i 153 (290)
++++....+|++.- +.|+.++..... .+|.+-+=.+.+.. + .|++.+.++|+-+++... +.+|+..|++
T Consensus 95 ~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh---~~~El~~a~~-- 169 (247)
T PRK13957 95 KSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVH---TEDEAKLALD-- 169 (247)
T ss_pred HHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEEC---CHHHHHHHHh--
Confidence 88888889999984 567777776665 57877666666654 2 477778889999999986 8899998865
Q ss_pred HHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh
Q 022892 154 RLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE 187 (290)
Q Consensus 154 ~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~ 187 (290)
.|..-|.+=.| +..+..+|+.....|..
T Consensus 170 --~ga~iiGINnR----dL~t~~vd~~~~~~L~~ 197 (247)
T PRK13957 170 --CGAEIIGINTR----DLDTFQIHQNLVEEVAA 197 (247)
T ss_pred --CCCCEEEEeCC----CCccceECHHHHHHHHh
Confidence 35543333333 35556788888777765
No 488
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=69.11 E-value=5.3 Score=33.92 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCC-CC-ChhHHHHHHHHHHHhcCCcEEEeecCcccH
Q 022892 29 EEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFR-GP-GMVEGLKILEKVKIAYDIPIVTDVHETVQC 100 (290)
Q Consensus 29 ~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~-g~-~~~~~l~~L~~~~~~~Gi~~~s~~~d~~~~ 100 (290)
.+..++..++.+++|+++|+..+......- +........ .. .+.+.++.+.+++++.|+.+.-|++.....
T Consensus 66 r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~ 138 (213)
T PF01261_consen 66 REEALEYLKKAIDLAKRLGAKYIVVHSGRY-PSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFS 138 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTBSEEEEECTTE-SSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSS
T ss_pred hHHHHHHHHHHHHHHHHhCCCceeecCccc-ccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccc
Confidence 456689999999999999999887764410 000000000 00 013678889999999999999998876543
No 489
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=69.08 E-value=98 Score=28.70 Aligned_cols=175 Identities=18% Similarity=0.213 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEE--eecCcccHHHHhh-hcc
Q 022892 32 IMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVT--DVHETVQCEEVGK-VAD 108 (290)
Q Consensus 32 ~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s--~~~d~~~~~~l~~-~~d 108 (290)
-.+.|++..+. |+..+...-.+- .+.+- ...+..+++.+++..+++=. =+.+.+.++.+.+ .++
T Consensus 33 P~~~a~~~~~~----Ga~~lHlVDLdg-------A~~g~--~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~ 99 (241)
T COG0106 33 PLEVAKKWSDQ----GAEWLHLVDLDG-------AKAGG--PRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVA 99 (241)
T ss_pred HHHHHHHHHHc----CCcEEEEeeccc-------cccCC--cccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCC
Confidence 46777777774 877666554442 12211 24577888888888777655 6888889988877 799
Q ss_pred eecccCCccCCHHHHHHHHh-cCCeEEEeCCCC---CCHH--------HHHHHHHHHHHcCCCcEEEEeecCCCCCCCCC
Q 022892 109 IIQIPAFLCRQTDLLVAAAK-TGKIINIKKGQF---CASS--------VMVNSAEKVRLAGNPNVMVCERGTMFGYNDLI 176 (290)
Q Consensus 109 ~~kIgs~~~~n~~lL~~~a~-~~~PVilstG~~---~tl~--------e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~ 176 (290)
.+-||+.-+.|.++++++.+ .|--|+++-..- ...+ +....++.+.+.|-.. +||+-.+.-+. ..=
T Consensus 100 rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~-ii~TdI~~DGt-l~G 177 (241)
T COG0106 100 RVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAH-ILYTDISRDGT-LSG 177 (241)
T ss_pred EEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCe-EEEEecccccc-cCC
Confidence 99999999999999998765 344444432111 0111 2233345666777644 55555543221 123
Q ss_pred CCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc-CCCEEEEeeeC
Q 022892 177 VDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV-GVDGVFMEVHD 243 (290)
Q Consensus 177 ~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~-GA~G~~IEkH~ 243 (290)
+|+..+..+.+ +.+||++. +|.+.. ..+ ++...+ |+.|+++=+-+
T Consensus 178 ~n~~l~~~l~~~~~ipviaS--------------------GGv~s~-~Di-~~l~~~~G~~GvIvG~AL 224 (241)
T COG0106 178 PNVDLVKELAEAVDIPVIAS--------------------GGVSSL-DDI-KALKELSGVEGVIVGRAL 224 (241)
T ss_pred CCHHHHHHHHHHhCcCEEEe--------------------cCcCCH-HHH-HHHHhcCCCcEEEEehHH
Confidence 57777777877 89999871 122211 122 233445 89999987765
No 490
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=69.05 E-value=1.1e+02 Score=30.74 Aligned_cols=80 Identities=14% Similarity=0.035 Sum_probs=50.8
Q ss_pred CCHHHHHHHHhcCC-eEEEeC-----CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCCCchhHHHHHh-cCC
Q 022892 118 RQTDLLVAAAKTGK-IINIKK-----GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANC 190 (290)
Q Consensus 118 ~n~~lL~~~a~~~~-PVilst-----G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~~~~dL~~i~~lk~-~~~ 190 (290)
++....+++.-.|. |+.+.+ ....++++++++++ ..+...+++++-..++..+...-|+..|..+-+ .++
T Consensus 160 th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt---~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI 236 (444)
T TIGR03531 160 DQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIE---EIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDI 236 (444)
T ss_pred ChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHH---hccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCC
Confidence 46666666665544 788774 23348899988876 233234555654333211112347888888865 899
Q ss_pred CEEEeCCCCC
Q 022892 191 PVVADVTHSL 200 (290)
Q Consensus 191 pV~~D~sHs~ 200 (290)
++++|.-|+.
T Consensus 237 ~lIvDaAyg~ 246 (444)
T TIGR03531 237 PHIVNNAYGL 246 (444)
T ss_pred EEEEECcCcC
Confidence 9999999985
No 491
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=69.04 E-value=1.7e+02 Score=31.38 Aligned_cols=138 Identities=11% Similarity=-0.018 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhh-hcceecccCCccCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGK-VADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 152 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~-~~d~~kIgs~~~~n~~lL~~~a~~~~PVilstG~~~tl~e~~~Ave~ 152 (290)
.-.+.+++.|++.|++++..= .++...+ .+| +-+|..++.- ...+..-..++-|.+|.. +.+|+..+...
T Consensus 50 ~~a~~l~~l~~~~~~~liind----~~~la~~~~~d-VHlg~~dl~~-~~~r~~~~~~~~iG~S~h---~~~e~~~~~~~ 120 (755)
T PRK09517 50 AAAKELKELCDARGVALVVND----RLDVAVELGLH-VHIGQGDTPY-TQARRLLPAHLELGLTIE---TLDQLEAVIAQ 120 (755)
T ss_pred HHHHHHHHHHHHhCCeEEEeC----hHHHHHHcCCC-eecCCCcCCH-HHHHHhcCCCCEEEEeCC---CHHHHHHHHhh
Confidence 446678899999999888763 2555555 577 8899888642 222333333566777654 88887655332
Q ss_pred HHHc---CCCcEEEEeecCC---CCCCCCCCCchhHHHHHh-cC---CCEEEeCCCCCCCCCCCccCCCCccCCCCcccH
Q 022892 153 VRLA---GNPNVMVCERGTM---FGYNDLIVDPRNLEWMRE-AN---CPVVADVTHSLQQPAGKKLDGGGVASGGLRELI 222 (290)
Q Consensus 153 i~~~---Gn~~i~L~~~gs~---~~y~~~~~dL~~i~~lk~-~~---~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~ 222 (290)
-... |-+.+.+-+.-.+ .+++ ..+.+..+..+.+ .. +||..= ||..
T Consensus 121 ~~~~g~~gaDYi~~Gpvf~T~tK~~~~-~~lG~~~l~~~~~~~~~~~iPv~Ai--------------------GGI~--- 176 (755)
T PRK09517 121 CAETGVALPDVIGIGPVASTATKPDAP-PALGVDGIAEIAAVAQDHGIASVAI--------------------GGVG--- 176 (755)
T ss_pred hccCCCCCCCEEEECCccccCCCCCCC-CCCCHHHHHHHHHhcCcCCCCEEEE--------------------CCCC---
Confidence 1122 3556666543211 1111 1256677777776 55 898651 2310
Q ss_pred HHHHHHHHHcCCCEEEEeeeCC
Q 022892 223 PCIARTAIAVGVDGVFMEVHDD 244 (290)
Q Consensus 223 ~~~a~aAva~GA~G~~IEkH~t 244 (290)
+.-...+.+.||+|+.+-+-+.
T Consensus 177 ~~~~~~~~~~Ga~giAvisai~ 198 (755)
T PRK09517 177 LRNAAELAATGIDGLCVVSAIM 198 (755)
T ss_pred HHHHHHHHHcCCCEEEEehHhh
Confidence 2233456778999999888873
No 492
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=68.99 E-value=80 Score=30.58 Aligned_cols=147 Identities=20% Similarity=0.248 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhcCCcEEEeecCcccHHHHhhh----cceecc--cCCccCCHHHHHHHHhcCCeEEEeC---CCCC-CH
Q 022892 74 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV----ADIIQI--PAFLCRQTDLLVAAAKTGKIINIKK---GQFC-AS 143 (290)
Q Consensus 74 ~~l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~----~d~~kI--gs~~~~n~~lL~~~a~~~~PVilst---G~~~-tl 143 (290)
+|=.--.+.|.+.|++++.+-|...+++.+.+. .-|+|+ -+.---+..|++.+-++|.-.++=| ..-| ..
T Consensus 85 dGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~ 164 (363)
T KOG0538|consen 85 DGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRE 164 (363)
T ss_pred cccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccccCch
Confidence 444556788899999999999999999999873 456654 3332234478888888887544433 1111 34
Q ss_pred HHHHHHHH--H-HHH---cCCCcEEE---EeecCC-C--CCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCC
Q 022892 144 SVMVNSAE--K-VRL---AGNPNVMV---CERGTM-F--GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDG 210 (290)
Q Consensus 144 ~e~~~Ave--~-i~~---~Gn~~i~L---~~~gs~-~--~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~ 210 (290)
.++.+-.. . +.. +|+...-. .+.|.. | .....+++-+-|++||. +++||++-.--+
T Consensus 165 ~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt----------- 233 (363)
T KOG0538|consen 165 SDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLT----------- 233 (363)
T ss_pred hhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecc-----------
Confidence 56665211 0 000 01100000 122221 2 12334677889999999 999998821111
Q ss_pred CCccCCCCcccHHHHHHHHHHcCCCEEEEeeeC
Q 022892 211 GGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 243 (290)
Q Consensus 211 ~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH~ 243 (290)
+ +=|+-|+..|++|+++--|=
T Consensus 234 ------~------eDA~~Ave~G~~GIIVSNHG 254 (363)
T KOG0538|consen 234 ------G------EDARKAVEAGVAGIIVSNHG 254 (363)
T ss_pred ------c------HHHHHHHHhCCceEEEeCCC
Confidence 2 33677899999999998883
No 493
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=68.87 E-value=11 Score=29.64 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCcEEEeecCcccHHHHhhhcceecccCCccCCHHHHHH-HHhcCCeEEEeC
Q 022892 76 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVA-AAKTGKIINIKK 137 (290)
Q Consensus 76 l~~L~~~~~~~Gi~~~s~~~d~~~~~~l~~~~d~~kIgs~~~~n~~lL~~-~a~~~~PVilst 137 (290)
...+++++++.|+++-.+..+..+++...+..|++-++..-....+-+++ +...++||.+=.
T Consensus 20 ~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 20 VNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVIN 82 (95)
T ss_pred HHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeC
Confidence 34566777777777766666666665554556888777776666666665 446678887633
No 494
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=68.83 E-value=1e+02 Score=28.80 Aligned_cols=209 Identities=17% Similarity=0.195 Sum_probs=120.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCC--hhHHHH-HHHHHHHhcCCcEEEeecCcccHHHHh
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPG--MVEGLK-ILEKVKIAYDIPIVTDVHETVQCEEVG 104 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~--~~~~l~-~L~~~~~~~Gi~~~s~~~d~~~~~~l~ 104 (290)
|.+..++.|.+=...-++.|+|+|....|-..|... ..+ -...+. ..+++.++.+||+-.-++--+.+..++
T Consensus 28 ~~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k-----~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~vaA~~ 102 (263)
T COG0434 28 SLEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLK-----DVGPETVAAMAVIVREVVREVSIPVGVNVLRNDAVAALA 102 (263)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-----CCChHHHHHHHHHHHHHHHhccccceeeeeccccHHHHH
Confidence 455666666655444556799999887766444322 222 112222 467888999999999888655554432
Q ss_pred --h--hcceecccCCc---cCC--------HHHHHHHHhcCC------eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE
Q 022892 105 --K--VADIIQIPAFL---CRQ--------TDLLVAAAKTGK------IINIKKGQFCASSVMVNSAEKVRLAGNPNVMV 163 (290)
Q Consensus 105 --~--~~d~~kIgs~~---~~n--------~~lL~~~a~~~~------PVilstG~~~tl~e~~~Ave~i~~~Gn~~i~L 163 (290)
. ..+|+-+-... .++ .+++|+-.+++. -|.+|-++......+..++.-....|-.+ .+
T Consensus 103 IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aD-aV 181 (263)
T COG0434 103 IAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLAD-AV 181 (263)
T ss_pred HHHhcCCCEEEEEeeeceEecccceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCC-EE
Confidence 2 36666543321 122 245555555552 46778887654345556655433344444 34
Q ss_pred EeecCCCCCCCCCCCchhHHHHHh-cCCCEEEeCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCCEEEEeee
Q 022892 164 CERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 242 (290)
Q Consensus 164 ~~~gs~~~y~~~~~dL~~i~~lk~-~~~pV~~D~sHs~~~~~~~~~~~~~~~~~g~~~~~~~~a~aAva~GA~G~~IEkH 242 (290)
|-.|...+-+ .|+.-+...++ .++||.+-|--+ +.-...-.. -|||+++-+-
T Consensus 182 I~tG~~TG~~---~d~~el~~a~~~~~~pvlvGSGv~-----------------------~eN~~~~l~-~adG~IvgT~ 234 (263)
T COG0434 182 IVTGSRTGSP---PDLEELKLAKEAVDTPVLVGSGVN-----------------------PENIEELLK-IADGVIVGTS 234 (263)
T ss_pred EEecccCCCC---CCHHHHHHHHhccCCCEEEecCCC-----------------------HHHHHHHHH-HcCceEEEEE
Confidence 4456543433 47777787888 789998832221 111111111 2788899988
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 022892 243 DDPLNAPVDGPTQWPLRNLEELLEELVAIA 272 (290)
Q Consensus 243 ~t~dka~~D~~~sl~p~~l~~lv~~ir~~~ 272 (290)
+--+..+ ....+++-.+++++..+++.
T Consensus 235 lK~~G~~---~n~VD~~Rv~~~v~~a~~~~ 261 (263)
T COG0434 235 LKKGGVT---WNPVDLERVRRFVEAARRLR 261 (263)
T ss_pred EccCCEe---cCccCHHHHHHHHHHHHHhc
Confidence 7433222 23567888888888887764
No 495
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=68.74 E-value=95 Score=28.40 Aligned_cols=124 Identities=15% Similarity=0.155 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhc--CCcEEEeecCcccH---HH
Q 022892 28 SEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAY--DIPIVTDVHETVQC---EE 102 (290)
Q Consensus 28 n~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~--Gi~~~s~~~d~~~~---~~ 102 (290)
|.++..++.+.|++ .|++.+.-..-. +.|..+..++-.+.++..++.. .+++++-+-....- +.
T Consensus 16 D~~~~~~~i~~l~~----~Gv~gi~~~Gst-------GE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~ 84 (281)
T cd00408 16 DLDALRRLVEFLIE----AGVDGLVVLGTT-------GEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIEL 84 (281)
T ss_pred CHHHHHHHHHHHHH----cCCCEEEECCCC-------cccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHH
Confidence 66666666666666 599987643211 1122233234444444444443 58888766654332 22
Q ss_pred ---Hhh-hcceecccCCc---cCCHHHH---HHHH-hcCCeEEE-----eCCCCCCHHHHHHHHHHHHHcCCCcEEEEee
Q 022892 103 ---VGK-VADIIQIPAFL---CRQTDLL---VAAA-KTGKIINI-----KKGQFCASSVMVNSAEKVRLAGNPNVMVCER 166 (290)
Q Consensus 103 ---l~~-~~d~~kIgs~~---~~n~~lL---~~~a-~~~~PVil-----stG~~~tl~e~~~Ave~i~~~Gn~~i~L~~~ 166 (290)
+.+ .+|.+-+..-- .++..++ +.++ .++.||++ .+|...+++.+..-++ .++++-+..
T Consensus 85 a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~------~~~v~giK~ 158 (281)
T cd00408 85 ARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE------HPNIVGIKD 158 (281)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc------CCCEEEEEe
Confidence 222 36655544422 2333443 3444 37899998 4677777887775432 567877776
Q ss_pred cC
Q 022892 167 GT 168 (290)
Q Consensus 167 gs 168 (290)
.+
T Consensus 159 s~ 160 (281)
T cd00408 159 SS 160 (281)
T ss_pred CC
Confidence 54
No 496
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=68.65 E-value=15 Score=34.67 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=63.0
Q ss_pred chhhHHhhhcCCCCeEEEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEecc--ccccC-------CCC------CcccC
Q 022892 3 PSTALFNQLKAAEPFFLLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKS--SFDKA-------NRT------SSKSF 67 (290)
Q Consensus 3 ~~~~~~~~i~~~~~~~iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~--~~~k~-------~rt------s~~~~ 67 (290)
|...++..+...-...++|+..+ ++-|.+-++ .|+|.|.-. .|+.. .|+ ..++|
T Consensus 99 P~~~~~~~iK~~~~~l~MAD~st-------leEal~a~~----~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gy 167 (283)
T cd04727 99 PADEEHHIDKHKFKVPFVCGARN-------LGEALRRIS----EGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSM 167 (283)
T ss_pred cHHHHHHHHHHHcCCcEEccCCC-------HHHHHHHHH----CCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 44467777765546688888554 444544444 599987543 23321 000 00011
Q ss_pred C-----CC--ChhHHHHHHHHHHHhcCCcEE--E--eecCcccHHHHhh-hcceecccCCcc
Q 022892 68 R-----GP--GMVEGLKILEKVKIAYDIPIV--T--DVHETVQCEEVGK-VADIIQIPAFLC 117 (290)
Q Consensus 68 ~-----g~--~~~~~l~~L~~~~~~~Gi~~~--s--~~~d~~~~~~l~~-~~d~~kIgs~~~ 117 (290)
. ++ ....++..|+++++...+|++ + -+++++.+..+.+ .++.+-|||.-+
T Consensus 168 t~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~ 229 (283)
T cd04727 168 SEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF 229 (283)
T ss_pred CHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhh
Confidence 0 00 012467788888888889996 5 3578888888777 588888888766
No 497
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=68.54 E-value=10 Score=35.80 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCeEEEeCCCCCCHH-------HHHHHHHHHHHcCCCcEEEEeecCCCCCC
Q 022892 120 TDLLVAAAKTGKIINIKKGQFCASS-------VMVNSAEKVRLAGNPNVMVCERGTMFGYN 173 (290)
Q Consensus 120 ~~lL~~~a~~~~PVilstG~~~tl~-------e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~ 173 (290)
.++.+++...|.||.+-||...... .-...-+++..-.|-+|+|.|+|..|+|-
T Consensus 147 ~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~ 207 (293)
T COG2159 147 YPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKFPELKIVLGHMGEDYPWE 207 (293)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCcccccCCCCchHHHHHHHHCCCCcEEEEecCCCCchh
Confidence 4688999999999999999954432 22233345566678899999999755553
No 498
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=68.47 E-value=25 Score=32.49 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC----CCCC--chhHHHHHh-cCCCEEEeCCCC
Q 022892 138 GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND----LIVD--PRNLEWMRE-ANCPVVADVTHS 199 (290)
Q Consensus 138 G~~~tl~e~~~Ave~i~~~Gn~~i~L~~~gs~~~y~~----~~~d--L~~i~~lk~-~~~pV~~D~sHs 199 (290)
|...+.+++.+-++...+.|.+=|=+.=+++++++.. ++.+ ...+..+++ +++||.+|+.+.
T Consensus 18 ~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~ 86 (257)
T cd00739 18 GRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDTFRA 86 (257)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCH
Confidence 3334677877777777777864333333333333321 1111 013455555 588999998874
No 499
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=68.22 E-value=24 Score=31.56 Aligned_cols=107 Identities=20% Similarity=0.243 Sum_probs=68.4
Q ss_pred EEEccCCccCHHHHHHHHHHHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcCCcEEEeecCcc
Q 022892 19 LLAGPNVIESEEHIMRMAKHIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYDIPIVTDVHETV 98 (290)
Q Consensus 19 iIAgpcsien~~~~le~Ak~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~Gi~~~s~~~d~~ 98 (290)
++.|.+.+-|. +.|++.++ +|++.+.-..|+ +.+.++|++.|++++-=++.|.
T Consensus 60 ~~vGAGTV~~~----e~a~~a~~----aGA~FivSP~~~-------------------~~v~~~~~~~~i~~iPG~~Tpt 112 (196)
T PF01081_consen 60 LLVGAGTVLTA----EQAEAAIA----AGAQFIVSPGFD-------------------PEVIEYAREYGIPYIPGVMTPT 112 (196)
T ss_dssp SEEEEES--SH----HHHHHHHH----HT-SEEEESS---------------------HHHHHHHHHHTSEEEEEESSHH
T ss_pred CeeEEEeccCH----HHHHHHHH----cCCCEEECCCCC-------------------HHHHHHHHHcCCcccCCcCCHH
Confidence 34466665343 44555555 598887754333 3578899999999999999999
Q ss_pred cHHHHhh-hcceecccCCccCC-HHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 022892 99 QCEEVGK-VADIIQIPAFLCRQ-TDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGN 158 (290)
Q Consensus 99 ~~~~l~~-~~d~~kIgs~~~~n-~~lL~~~a~~--~~PVilstG~~~tl~e~~~Ave~i~~~Gn 158 (290)
++....+ .++++|+=-...-. ..+++.+..- +.|++ -||-- +++ |.-+++. .|+
T Consensus 113 Ei~~A~~~G~~~vK~FPA~~~GG~~~ik~l~~p~p~~~~~-ptGGV-~~~---N~~~~l~-ag~ 170 (196)
T PF01081_consen 113 EIMQALEAGADIVKLFPAGALGGPSYIKALRGPFPDLPFM-PTGGV-NPD---NLAEYLK-AGA 170 (196)
T ss_dssp HHHHHHHTT-SEEEETTTTTTTHHHHHHHHHTTTTT-EEE-EBSS---TT---THHHHHT-STT
T ss_pred HHHHHHHCCCCEEEEecchhcCcHHHHHHHhccCCCCeEE-EcCCC-CHH---HHHHHHh-CCC
Confidence 9998888 69999997776666 8899988762 45554 55543 343 3444443 454
No 500
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=68.00 E-value=11 Score=36.15 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=60.1
Q ss_pred HHHHHHHHcCCCEEeccccccCCCCCcccCCCCChhHHHHHHHHHHHhcC-CcEEE--eecCcccHHHHhhh--cceecc
Q 022892 38 HIKSISTKVGLPLVFKSSFDKANRTSSKSFRGPGMVEGLKILEKVKIAYD-IPIVT--DVHETVQCEEVGKV--ADIIQI 112 (290)
Q Consensus 38 ~L~~~a~~~G~~~V~~~~~~k~~rts~~~~~g~~~~~~l~~L~~~~~~~G-i~~~s--~~~d~~~~~~l~~~--~d~~kI 112 (290)
.+.+.+.++|++++.-- .||....|.+. .-|++++++.+... +|++. ++++++++..+.+. +|-+-|
T Consensus 156 ~ia~~~~~~g~~~ltVH-----gRtr~~~y~~~---ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMi 227 (323)
T COG0042 156 EIARILEDAGADALTVH-----GRTRAQGYLGP---ADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMI 227 (323)
T ss_pred HHHHHHHhcCCCEEEEe-----cccHHhcCCCc---cCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEE
Confidence 33334444677765542 45554445432 45788888888888 99999 88999999998874 999999
Q ss_pred cCCccCCHHHHHHH
Q 022892 113 PAFLCRQTDLLVAA 126 (290)
Q Consensus 113 gs~~~~n~~lL~~~ 126 (290)
|-..+.|..|++++
T Consensus 228 gRga~~nP~l~~~i 241 (323)
T COG0042 228 GRGALGNPWLFRQI 241 (323)
T ss_pred cHHHccCCcHHHHH
Confidence 99999999988875
Done!