Query 022893
Match_columns 290
No_of_seqs 75 out of 77
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 12:54:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a8j_B Elongator complex prote 99.0 7.6E-09 2.6E-13 95.5 13.5 117 147-271 101-234 (270)
2 3bs4_A Uncharacterized protein 98.4 1.1E-05 3.8E-10 73.9 16.9 190 50-265 44-249 (260)
3 4a8j_C Elongator complex prote 98.4 3.4E-05 1.2E-09 71.8 20.2 208 15-266 31-277 (280)
4 2zts_A Putative uncharacterize 98.0 9.9E-05 3.4E-09 63.1 13.3 183 54-270 58-248 (251)
5 2dr3_A UPF0273 protein PH0284; 97.7 0.0002 6.9E-09 61.2 10.7 183 54-271 50-238 (247)
6 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.0091 3.1E-07 50.0 16.7 178 54-269 50-232 (235)
7 2i1q_A DNA repair and recombin 96.8 0.022 7.5E-07 51.8 13.6 156 56-265 143-321 (322)
8 2cvh_A DNA repair and recombin 96.8 0.01 3.5E-07 49.7 10.3 159 54-266 44-218 (220)
9 2z43_A DNA repair and recombin 96.6 0.014 4.9E-07 53.5 10.9 157 55-265 141-320 (324)
10 1q57_A DNA primase/helicase; d 96.2 0.089 3E-06 51.0 14.4 112 148-275 356-488 (503)
11 3bh0_A DNAB-like replicative h 96.0 0.14 4.7E-06 46.9 13.8 108 148-270 183-309 (315)
12 2ehv_A Hypothetical protein PH 95.7 0.13 4.3E-06 43.7 11.9 178 54-268 58-246 (251)
13 1v5w_A DMC1, meiotic recombina 95.2 0.1 3.4E-06 48.4 10.2 161 54-266 155-340 (343)
14 2r6a_A DNAB helicase, replicat 93.7 1.3 4.3E-05 42.4 14.3 109 148-271 315-443 (454)
15 2q6t_A DNAB replication FORK h 93.5 1.3 4.3E-05 42.3 13.9 184 55-269 229-440 (444)
16 3bgw_A DNAB-like replicative h 93.4 0.53 1.8E-05 45.5 11.2 108 148-270 312-438 (444)
17 1n0w_A DNA repair protein RAD5 93.1 0.7 2.4E-05 38.9 10.2 157 55-265 58-239 (243)
18 4a8j_A Elongator complex prote 93.0 0.37 1.3E-05 46.1 9.1 110 126-245 200-322 (361)
19 3lda_A DNA repair protein RAD5 91.1 2.4 8.1E-05 40.5 12.4 157 55-266 212-394 (400)
20 3cmu_A Protein RECA, recombina 90.7 0.57 2E-05 53.7 8.7 117 54-212 61-202 (2050)
21 1xp8_A RECA protein, recombina 85.2 4.5 0.00015 38.1 9.8 118 54-213 101-243 (366)
22 1tf7_A KAIC; homohexamer, hexa 82.8 28 0.00097 33.6 14.7 165 54-268 308-481 (525)
23 1pzn_A RAD51, DNA repair and r 81.5 17 0.00058 33.5 12.1 38 56-93 166-205 (349)
24 3cmw_A Protein RECA, recombina 76.1 4.9 0.00017 45.5 7.6 115 54-211 61-201 (1706)
25 1u94_A RECA protein, recombina 74.5 12 0.0004 35.0 8.8 118 54-212 90-231 (356)
26 2zr9_A Protein RECA, recombina 74.4 29 0.001 32.1 11.4 117 54-212 88-229 (349)
27 1cr0_A DNA primase/helicase; R 73.4 11 0.00038 33.1 7.9 111 148-275 149-281 (296)
28 3cmw_A Protein RECA, recombina 69.3 8.2 0.00028 43.7 7.3 117 54-212 410-551 (1706)
29 1tf7_A KAIC; homohexamer, hexa 65.5 35 0.0012 33.0 10.2 132 55-212 68-209 (525)
30 4a74_A DNA repair and recombin 62.8 37 0.0013 27.7 8.6 92 148-265 127-230 (231)
31 3cmu_A Protein RECA, recombina 61.2 49 0.0017 38.3 11.6 117 54-212 410-551 (2050)
32 3hr8_A Protein RECA; alpha and 37.3 1.4E+02 0.0048 27.8 9.0 64 148-212 141-229 (356)
33 1nlf_A Regulatory protein REPA 31.1 2.5E+02 0.0086 24.0 9.1 25 56-80 69-93 (279)
No 1
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=98.96 E-value=7.6e-09 Score=95.46 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=84.7
Q ss_pred cEEEEEechhHHHHhCChHHHHHHHHhhhcCCceeEEEEeeccccc-------------chhHHHHHHhhceeEEEEeec
Q 022893 147 RFSIAIDSVSEMVRHASISSVAGILSNLRSHDQVSSIFWLLHSDLH-------------EIKFTSVLEYLSSMVASVEPF 213 (290)
Q Consensus 147 ~~~VaIDSLS~LL~h~s~~~v~~lL~~Lr~~~~issV~~LlHsDLH-------------e~~v~~ALe~LAs~vi~vep~ 213 (290)
+..|+|||||.++. ..+.++|..+-. + -.++++.-|.|+- .|..+.-|.|||+++++|.|.
T Consensus 101 k~LVIIDSLN~l~~----~~L~~FlsSi~s-P-~~sLv~vYH~DvP~~~~~~~~~~n~y~Ps~LtLL~ylATTIl~v~~~ 174 (270)
T 4a8j_B 101 KHMVIIDSLNYIST----EYITRFLSEIAS-P-HCTMVATYHKDIKDENRTVIPDWNNNYPDKLTLLQFMATTIVDIDVV 174 (270)
T ss_dssp CEEEEESCGGGSCG----GGHHHHHHHHCC-T-TEEEEEEEETTSCCC------CTTBCCCCHHHHHHHHCSEEEEEEEC
T ss_pred ceEEEEecCcchhh----hhHHHHHHHhhc-C-CcEEEEEecCCCCCCCccccccccCCCCChHHHHHHhhhheEEEecC
Confidence 48999999999996 477888888774 4 4479999999974 456677899999999999998
Q ss_pred Ccccccccchhhhhhhh----hhcccceeEEEEEecCCCCeeeeEeEEEEEcCceEEEeccC
Q 022893 214 NQAAFGQRVDLENLSML----EQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKFTPVLS 271 (290)
Q Consensus 214 ~~~~~~~~~~~~~~~~~----~~n~~~~~~~Vr~kRr~GRV~~~~E~f~I~~~~~~f~~~~~ 271 (290)
.....-.|++-+.++-+ .-|...=++.+..|||+||-.. -.|.|+.+.=.+.-...
T Consensus 175 ~~~~~deE~l~~~l~k~~~P~glN~~~f~l~ltnrRKSGRsl~--y~f~ids~~H~Yev~~~ 234 (270)
T 4a8j_B 175 LTGTLDTEEVSELLNEFRIPRGLNNDIFQLRLVNKRKSGRSLE--YDFIVNSNTHEYELLST 234 (270)
T ss_dssp CCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEEEEECTTSCEEE--EEEEEETTTTEEEEC--
T ss_pred CCCCccHHHHHHHhhheecccccCCCeEEEEEEeccccCcceE--EEEEEcCCCceEEEeec
Confidence 76544344444444433 2354566888899999999763 46778777754444433
No 2
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=98.41 E-value=1.1e-05 Score=73.92 Aligned_cols=190 Identities=13% Similarity=0.056 Sum_probs=109.2
Q ss_pred hhccccCcEEEEEecCChHHHHHHHHhcCCCcCCC--CCeEEEEecccCCCCCcccccCccccccccccccccccchhhh
Q 022893 50 AGKSQSRGLVVVAYSRSPSFYVDLLKRRGIDIASS--HDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLD 127 (290)
Q Consensus 50 a~~~q~~~V~vlafe~spe~y~~~lk~~G~d~~~~--~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~ 127 (290)
++..+++.+++++||-+|+.+..-++..|+|.+.. +.++.++|.|+...+....... --+.+... ++..+-
T Consensus 44 ~g~~~Ge~~~~~~~~e~~~~l~~~~~~~G~dl~~~~~~g~l~i~d~~~~~~~~~~~~~~---v~~~~~e~----d~~~l~ 116 (260)
T 3bs4_A 44 RKLKSDNLVGMFSISYPLQLIIRILSRFGVDVIKYLENHRLAIVDTFGSFHGIKATMPG---VWYLEGML----SSETLP 116 (260)
T ss_dssp HHHHTTCEEEEEECSSCHHHHHHHHHHTTCCHHHHHHTTSEEEECHHHHHHTC---CTT---EECCCSCC----CTTTHH
T ss_pred HHHHCCCcEEEEEEeCCHHHHHHHHHHcCCCHHHHhhCCcEEEEEcccccccccccccc---eecccccC----CHHHHH
Confidence 56677899999999999999999999999997531 3479999998844433221000 00000001 122221
Q ss_pred HHHHHHHHhccC---ccCC-CCCcEEEEEechhHHHHhCChHHHHHHHHhhhcC----------CceeEEEEeecccccc
Q 022893 128 KLYSLIIEQGKG---LIGQ-GKDRFSIAIDSVSEMVRHASISSVAGILSNLRSH----------DQVSSIFWLLHSDLHE 193 (290)
Q Consensus 128 sl~~~~~e~~~~---~~~~-~k~~~~VaIDSLS~LL~h~s~~~v~~lL~~Lr~~----------~~issV~~LlHsDLHe 193 (290)
..+..+++..|. .... +..|++++||||+.+..-.+......++.++... ..++ .+++.. |.+.
T Consensus 117 ~~i~~iv~~~~~~~~i~~~~~~~rvv~vidsldsl~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t-til~~~-~~~~ 194 (260)
T 3bs4_A 117 IKYAKAVEDHKKVWMDLNLFEGRELYGFAISMSGYLEVFTPEETLRYLETSAEVRYGHPAYKKYPRGT-NFWLWE-GVKD 194 (260)
T ss_dssp HHHHHHHHHHHHHHHHTTCSTTCCEEEEEETGGGGGGTSCHHHHHHHHHHHHHHHHHCHHHHSSCCCE-EEEEEE-SCSC
T ss_pred HHHHHHHHhhccccchhhccCCceEEEEEeecchHHHHhChhhHHHHHHHHHHhhhhHHHHhccCCcE-EEEEEC-CCcc
Confidence 112344442100 0111 1245778998888888777776766666655322 3444 444455 7777
Q ss_pred hhHHHHHHhhceeEEEEeecCcccccccchhhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceE
Q 022893 194 IKFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIK 265 (290)
Q Consensus 194 ~~v~~ALe~LAs~vi~vep~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~I~~~~~~ 265 (290)
+.....+.++|+.||.+.-.... + ..-+.-...|.|.+.-.....+|.|..++..
T Consensus 195 ~~~~~~l~~laD~VI~lr~~e~~----------------g-~~rR~L~V~K~Rg~~~~~~~re~~i~~~~~~ 249 (260)
T 3bs4_A 195 KRVLLSVYRRADYVLKTRSSLGE----------------N-GIKRELLVIKTPKPIEELVRFEYEFKGNEPK 249 (260)
T ss_dssp HHHHHHHHHHCSEEEEEEEEEET----------------T-EEEEEEEEEECCC-----CEEEEEEETTEEE
T ss_pred cccccceEEEeeEEEEEEEEecC----------------C-ceEEEEEEEECCCCCcCCceEEEEEecCCcc
Confidence 77778899999999999633211 0 1122333345556666666677999887654
No 3
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=98.40 E-value=3.4e-05 Score=71.77 Aligned_cols=208 Identities=14% Similarity=0.127 Sum_probs=128.0
Q ss_pred cC-CCCCceEeecCCCCCchhhHHHHHHHHHHHHHH-hhc-------------cccCcEEEEEecCChHHHHHHHHhcCC
Q 022893 15 EG-EHAPALTIKDSKASPFGFDVFNYVLTQLSNYIL-AGK-------------SQSRGLVVVAYSRSPSFYVDLLKRRGI 79 (290)
Q Consensus 15 ~g-e~ap~l~i~dsl~~~~g~~~~~h~~~~l~s~i~-a~~-------------~q~~~V~vlafe~spe~y~~~lk~~G~ 79 (290)
.+ +..-+++|...+.+.. +|++..+..... ... .....|+++.|-.++++|.+.+||-|+
T Consensus 31 ~~~~~~~L~liT~~~gTsp-----~WLin~lves~L~G~~~~~n~~~~~~~~~~~~~~Vv~~SF~~~~~fy~~~~~Klgi 105 (280)
T 4a8j_C 31 QDSNSHNLFFITHQSCTQP-----LWMINALVETHVLGSPSSLNESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKI 105 (280)
T ss_dssp TSSSCCEEEEEEECTTSCC-----HHHHHHHHHHHHHSSCHHHHCC----CCCCCCCEEEEEESSSCHHHHHHHHHHTTC
T ss_pred CCCCCceEEEEccccCCCh-----HHHHHHHHHHHhcCCcccccccccccccCCCCceEEEEEeecCHHHHHHHHHHhCC
Confidence 55 6778889999985543 233333322222 111 122479999999999999999999999
Q ss_pred CcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHHHHHHhccCccCCCCCcEEEEEechhHHH
Q 022893 80 DIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAIDSVSEMV 159 (290)
Q Consensus 80 d~~~~~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~~~e~~~~~~~~~k~~~~VaIDSLS~LL 159 (290)
|. +++.++|||||..-=+ .... + .. +...++.+++..++.. . .+ +.+|+||..--||
T Consensus 106 dl----~~f~fvD~~tdl~~~~-~~~k--p---~~------~~l~~v~~~f~~~i~~----~--~~-~~vlIldqpdlLL 162 (280)
T 4a8j_C 106 PS----NNYNVLDFLSDFIVNN-IHNK--P---RD------KILSDVLAKFSAAIQN----N--PT-DTIVIIEQPELLL 162 (280)
T ss_dssp CG----GGEEEEESSTTHHHHH-TTTC--C---HH------HHHHHHHHHHHHHHHT----S--TT-SEEEEEECGGGHH
T ss_pred Ch----hheeEEEecchhhhhc-ccCC--c---ch------hhhHHHHHHHhhhhhc----c--CC-CeEEEEcChHHHH
Confidence 96 4899999999988211 0010 0 00 1124555555554441 1 12 3899999999888
Q ss_pred Hh---CChHHH-HHHHHhhhcCCceeEEEEeecccc---cc----------hhHHHHHHhhceeEEEEeecCcccccccc
Q 022893 160 RH---ASISSV-AGILSNLRSHDQVSSIFWLLHSDL---HE----------IKFTSVLEYLSSMVASVEPFNQAAFGQRV 222 (290)
Q Consensus 160 ~h---~s~~~v-~~lL~~Lr~~~~issV~~LlHsDL---He----------~~v~~ALe~LAs~vi~vep~~~~~~~~~~ 222 (290)
-- ....++ ..+|..|+++... .|+ .+..|. |+ ..++..+.|.|+++++|.|.+-.. .+-
T Consensus 163 a~t~~it~~~L~~~~I~~L~k~~~~-lvv-t~saD~pli~~~~~t~~~~e~a~f~~~l~H~A~~visLrpL~TG~--AkD 238 (280)
T 4a8j_C 163 SLVSGLTCSELNNKFITPLLRQCKV-LII-VSNSDIFNIDEYDASVHSSNLQNFYKSSFIKSMINLNLNPLKTGF--AKD 238 (280)
T ss_dssp HHSTTCCHHHHHHHTHHHHHHTCSE-EEE-EEECGGGCCSSCCHHHHTHHHHHHHHHHHHHCSEEEEEECCCC----CCS
T ss_pred HhccCCCHHHHHHHHHHHHHHhcce-EEE-EeccCccccccCCCCchHHHHHHHHHHHHHHhheEEeecccCCcc--ccc
Confidence 74 456677 8889999874331 233 334443 21 267889999999999999976641 010
Q ss_pred hhhhhhhhhhcccceeEEEEEecCC-------CCeeeeEeEEEEEcCceEE
Q 022893 223 DLENLSMLEQNFRKGKFHVRFKRRN-------GRVRVMCEEILVELAGIKF 266 (290)
Q Consensus 223 ~~~~~~~~~~n~~~~~~~Vr~kRr~-------GRV~~~~E~f~I~~~~~~f 266 (290)
=-|.++|.+--.. ..|.+..--|+|+.++++.
T Consensus 239 ------------VTGvLrItrGg~~~~~~~~~~~v~E~EyLY~v~~dgVKv 277 (280)
T 4a8j_C 239 ------------VTGSLHVCRGGAPIATSNTSLHVVENEYLYLNEKESTKL 277 (280)
T ss_dssp ------------CCEEEEEEECSSCCCCSCTTCCBCCEEEEEEEETTEEEE
T ss_pred ------------ceEEEEEecCCcccccccccccccceeEEEEEcCCcEEE
Confidence 1267777664422 2355544456666665543
No 4
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=98.00 E-value=9.9e-05 Score=63.14 Aligned_cols=183 Identities=15% Similarity=0.092 Sum_probs=95.1
Q ss_pred ccCcEEEEEecCChHHHHHHHHhcCCCcCC--CCCeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHH
Q 022893 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIAS--SHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYS 131 (290)
Q Consensus 54 q~~~V~vlafe~spe~y~~~lk~~G~d~~~--~~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~ 131 (290)
.++.++++.+|-+++.+.+-+++.|.+.+. ...++.+.|.+....+...... + ........+.++.
T Consensus 58 ~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~ 125 (251)
T 2zts_A 58 YGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEK-----------F-VLEDRFNVDNFLR 125 (251)
T ss_dssp HCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------------------------------CCHHHHHH
T ss_pred cCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhhcccchh-----------c-cccccccHHHHHH
Confidence 366899999999999999999888776432 1346889998876654332211 0 0001111222222
Q ss_pred HHHHhccCccCCCCCcEEEEEechhHHHHhCC-hHHHHHHHHhhhcCCc-ee-EEEEeeccc---ccchhHHHHHHhhce
Q 022893 132 LIIEQGKGLIGQGKDRFSIAIDSVSEMVRHAS-ISSVAGILSNLRSHDQ-VS-SIFWLLHSD---LHEIKFTSVLEYLSS 205 (290)
Q Consensus 132 ~~~e~~~~~~~~~k~~~~VaIDSLS~LL~h~s-~~~v~~lL~~Lr~~~~-is-sV~~LlHsD---LHe~~v~~ALe~LAs 205 (290)
.+.+..+ +.++ -.|+||+++.+....+ ...+...++.|++..+ .. .++.+.|.. .......+.++|+|+
T Consensus 126 ~~~~~~~----~~~~-~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD 200 (251)
T 2zts_A 126 YIYRVVK----AINA-KRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIAR 200 (251)
T ss_dssp HHHHHHH----HTTC-SEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCS
T ss_pred HHHHHHH----hcCC-cEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEee
Confidence 2222111 1233 4789999999987543 3444555566655322 11 233333321 111233457899999
Q ss_pred eEEEEeecCcccccccchhhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceEEEecc
Q 022893 206 MVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKFTPVL 270 (290)
Q Consensus 206 ~vi~vep~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~I~~~~~~f~~~~ 270 (290)
+++.+.-.... +...-.+.|. |-|++..-...-.|.|.++|+++.|-+
T Consensus 201 ~vi~l~~~~~~----------------~~~~R~l~I~-K~R~~~~~~~~~~f~It~~Gi~v~p~~ 248 (251)
T 2zts_A 201 GVIVLDLQEKN----------------IELKRYVLIR-KMRETRHSMKKYPFEIGPNGIVVYPSG 248 (251)
T ss_dssp EEEEEEEEECS----------------SSEEEEEEEE-EETTCCCCCBEEEEEEETTEEEECC--
T ss_pred EEEEEEEEecC----------------CeEEEEEEEE-EcCCCCCCCEEEEEEEeCCcEEEeCcc
Confidence 99988632211 0011234443 446666555556699999999887643
No 5
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.74 E-value=0.0002 Score=61.20 Aligned_cols=183 Identities=13% Similarity=0.124 Sum_probs=98.5
Q ss_pred ccCcEEEEEecCChHHHHHHHHhcCCCcCCC--CCeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHH
Q 022893 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASS--HDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYS 131 (290)
Q Consensus 54 q~~~V~vlafe~spe~y~~~lk~~G~d~~~~--~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~ 131 (290)
+++++.++.+|.+++.+.+-+++.|++.... ..++.+.|+|..-.+....... +.. ....++..+..
T Consensus 50 ~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~ 118 (247)
T 2dr3_A 50 MGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKSKEYEK----------YIV-HDLTDIREFIE 118 (247)
T ss_dssp TTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTTTCC--CCCS----------CBC-SCCSSHHHHHH
T ss_pred cCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEecchhhccccccccc----------ccc-cCccCHHHHHH
Confidence 4679999999999999999888888874321 1368999987654432111000 000 01112222222
Q ss_pred HHHHhccCccCCCCCcEEEEEechhHHHHhCChHHHHHHHHhhhcC---CceeEEEEeecccccchhH-HHHHHhhceeE
Q 022893 132 LIIEQGKGLIGQGKDRFSIAIDSVSEMVRHASISSVAGILSNLRSH---DQVSSIFWLLHSDLHEIKF-TSVLEYLSSMV 207 (290)
Q Consensus 132 ~~~e~~~~~~~~~k~~~~VaIDSLS~LL~h~s~~~v~~lL~~Lr~~---~~issV~~LlHsDLHe~~v-~~ALe~LAs~v 207 (290)
.+.+..+ +.++ -.|+||+++.++. .+....-+.+..|++. ..+ .|+...|..-..... -.++++.++++
T Consensus 119 ~i~~~~~----~~~~-~~vviD~~~~l~~-~~~~~~~~~l~~l~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~D~v 191 (247)
T 2dr3_A 119 VLRQAIR----DINA-KRVVVDSVTTLYI-NKPAMARSIILQLKRVLAGTGC-TSIFVSQVSVGERGFGGPGVEHGVDGI 191 (247)
T ss_dssp HHHHHHH----HHTC-CEEEEETSGGGTT-TCGGGHHHHHHHHHHHHHHTTC-EEEEEEECC----CCC-CCHHHHSSEE
T ss_pred HHHHHHH----HhCC-CEEEECCchHhhc-CCHHHHHHHHHHHHHHHHHCCC-eEEEEecCCCCcccccccccceeEEEE
Confidence 2222111 1123 4799999998873 2333333444444432 122 466666654332100 01378888999
Q ss_pred EEEeecCcccccccchhhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceEEEeccC
Q 022893 208 ASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKFTPVLS 271 (290)
Q Consensus 208 i~vep~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~I~~~~~~f~~~~~ 271 (290)
+.+...... +.....+.| .|-|+|......-.|.|.++|+...|.+.
T Consensus 192 i~L~~~~~~----------------~~~~r~l~v-~K~R~~~~~~~~~~f~i~~~Gi~~~~~~~ 238 (247)
T 2dr3_A 192 IRLDLDEID----------------GELKRSLIV-WKMRGTSHSMRRHPFDITDKGIIVYPDKV 238 (247)
T ss_dssp EEEEEEEET----------------TEEEEEEEE-EEETTSCCCCBCEEEEEETTEEEECTTCC
T ss_pred EEEEEEccC----------------CeeEEEEEE-EECCCCCCCCceEEEEEcCCCEEEecCcc
Confidence 999743221 001123333 24466666556778999999988876543
No 6
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.45 E-value=0.0091 Score=50.00 Aligned_cols=178 Identities=13% Similarity=0.050 Sum_probs=94.5
Q ss_pred ccCcEEEEEecCChHHHHHHHHhcCCCcCCC-CCeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHHH
Q 022893 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASS-HDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (290)
Q Consensus 54 q~~~V~vlafe~spe~y~~~lk~~G~d~~~~-~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (290)
++..|.++++|.+++.+.+.+++.|++.... ..++.++|.+....+ ...... .. +..++...+..
T Consensus 50 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~----~~~~~~~~~~~ 115 (235)
T 2w0m_A 50 DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKE-DQWSLV---------NL----TPEELVNKVIE 115 (235)
T ss_dssp HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC-----CTTBCS---------SC----CHHHHHHHHHH
T ss_pred CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccC-ceeeec---------CC----CHHHHHHHHHH
Confidence 3568999999999998888887777764421 125778887765443 100000 00 22233322233
Q ss_pred HHHhccCccCCCCCcEEEEEechhHHHHh--CChHHHHHHHHhhhcCCceeEEEEeeccc-ccchhHHHHHHhhceeEEE
Q 022893 133 IIEQGKGLIGQGKDRFSIAIDSVSEMVRH--ASISSVAGILSNLRSHDQVSSIFWLLHSD-LHEIKFTSVLEYLSSMVAS 209 (290)
Q Consensus 133 ~~e~~~~~~~~~k~~~~VaIDSLS~LL~h--~s~~~v~~lL~~Lr~~~~issV~~LlHsD-LHe~~v~~ALe~LAs~vi~ 209 (290)
.....+ ++. ..|+||+++.++.. .....+.+.|.++.+...+ .|+..-|.. ..+......++++++.++.
T Consensus 116 ~~~~~~-----~~~-~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~d~vi~ 188 (235)
T 2w0m_A 116 AKQKLG-----YGK-ARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNF-TIYATSQYAITTSQAFGFGVEHVADGIIR 188 (235)
T ss_dssp HHHHHC-----SSC-EEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTE-EEEEEEC-----------CHHHHCSEEEE
T ss_pred HHHhhC-----CCc-eEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCC-eEEEEeccCcccccccccchheeeeEEEE
Confidence 232111 221 59999999998732 2235556666666432222 455555543 2222111468899999999
Q ss_pred EeecCcccccccchhhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcC-ceEEEec
Q 022893 210 VEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELA-GIKFTPV 269 (290)
Q Consensus 210 vep~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~I~~~-~~~f~~~ 269 (290)
+.-.... +.....+.|. |-|++......-.|.|.++ |+.+.+.
T Consensus 189 l~~~~~~----------------~~~~r~l~v~-K~r~~~~~~~~~~f~i~~~~Gi~~~~~ 232 (235)
T 2w0m_A 189 FRRMIRN----------------GELHRYILIE-KMRQTDHDKHVWEIDIVNGKGIVLKGR 232 (235)
T ss_dssp EEEEEET----------------TEEEEEEEEE-EETTCCCCCSCEEEEEETTTEEEEEEE
T ss_pred EEEEecC----------------CcEEEEEEEE-eccCCcccceeEEEEEcCCCCeEEecC
Confidence 9743221 0022344444 3355555445678899999 8877653
No 7
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.79 E-value=0.022 Score=51.76 Aligned_cols=156 Identities=11% Similarity=0.071 Sum_probs=86.1
Q ss_pred CcEEEEEecCC--hHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHHHH
Q 022893 56 RGLVVVAYSRS--PSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (290)
Q Consensus 56 ~~V~vlafe~s--pe~y~~~lk~~G~d~~~~~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~~ 133 (290)
+.|.++.+|.+ |+.+.+-+++.|++.+..-+++++.+.++ .. ++..++..+
T Consensus 143 ~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~----~~-----------------------~~~~~l~~l 195 (322)
T 2i1q_A 143 PKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYN----SD-----------------------MQMLFAEKI 195 (322)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTEEEEECSS----HH-----------------------HHHHHHHTH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCEEEEeCCC----HH-----------------------HHHHHHHHH
Confidence 68999999997 88888888888887532113566655321 10 111111111
Q ss_pred HHhccCccCC-CCCcEEEEEechhHHHHhC-----Ch----HHHHHHHHhhhcCCc-ee-EEEEeec--cccc-------
Q 022893 134 IEQGKGLIGQ-GKDRFSIAIDSVSEMVRHA-----SI----SSVAGILSNLRSHDQ-VS-SIFWLLH--SDLH------- 192 (290)
Q Consensus 134 ~e~~~~~~~~-~k~~~~VaIDSLS~LL~h~-----s~----~~v~~lL~~Lr~~~~-is-sV~~LlH--sDLH------- 192 (290)
.+..+ + .+. -.|+||||+.+.+.. .. ..+.++++.|++... .. .|+.+-| .+..
T Consensus 196 ~~~~~----~~~~~-~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~ 270 (322)
T 2i1q_A 196 EDLIQ----EGNNI-KLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAE 270 (322)
T ss_dssp HHHHH----TTCEE-EEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CC
T ss_pred HHHHh----hccCc-cEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCc
Confidence 11111 1 233 689999999998641 11 235666666665321 11 2333333 2222
Q ss_pred chhHHHHHHhhceeEEEEeecCcccccccchhhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceE
Q 022893 193 EIKFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIK 265 (290)
Q Consensus 193 e~~v~~ALe~LAs~vi~vep~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~I~~~~~~ 265 (290)
.|.--.+++|.+++++.++.... ..-.++ ..|-|++. ...+ .|.|..+|+.
T Consensus 271 ~~~g~~~~~~~~d~~i~l~~~~~-------------------~~r~~~-v~k~~~~p-~~~~-~f~I~~~Gi~ 321 (322)
T 2i1q_A 271 QAIGGHIVGHAATFRFFVRKGKG-------------------DKRVAK-LYDSPHLP-DAEA-IFRITEKGIQ 321 (322)
T ss_dssp EESSHHHHHHHCSEEEEEEECST-------------------TEEEEE-EEECSSSC-CEEE-EEEEETTEEE
T ss_pred CCCCcHHHHhcCcEEEEEEecCC-------------------CeEEEE-EEECCCCC-CeEE-EEEEeCCCcC
Confidence 23334589999999999984321 111232 33446663 2333 8999988764
No 8
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.75 E-value=0.01 Score=49.70 Aligned_cols=159 Identities=10% Similarity=0.146 Sum_probs=87.0
Q ss_pred ccCcEEEEEecC--ChHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHH
Q 022893 54 QSRGLVVVAYSR--SPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYS 131 (290)
Q Consensus 54 q~~~V~vlafe~--spe~y~~~lk~~G~d~~~~~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~ 131 (290)
+++++.++.+|. +++.+.+.++..|++.+....++.+.+ |.++ .++..++.
T Consensus 44 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----------------------~~~~~~~~ 96 (220)
T 2cvh_A 44 SGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFT----PSDF-----------------------KEQRRVIG 96 (220)
T ss_dssp HCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEEC----CTTT-----------------------SHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEe----cCCH-----------------------HHHHHHHH
Confidence 467899999998 888888877766664321112333332 2212 11111212
Q ss_pred HHHHhccCccCCCCCcEEEEEechhHHHHhCCh-----HHHHHH---HHhhhcCCceeEEEEeeccc--c----cchhHH
Q 022893 132 LIIEQGKGLIGQGKDRFSIAIDSVSEMVRHASI-----SSVAGI---LSNLRSHDQVSSIFWLLHSD--L----HEIKFT 197 (290)
Q Consensus 132 ~~~e~~~~~~~~~k~~~~VaIDSLS~LL~h~s~-----~~v~~l---L~~Lr~~~~issV~~LlHsD--L----He~~v~ 197 (290)
.+.. +..+ ++ -+|+||+++.++...+. ..+..+ |.++.+...+ .|+..-|.. . ..|.-.
T Consensus 97 ~~~~----l~~~-~~-~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~-~vi~~~h~~~~~~~~~~~p~~~ 169 (220)
T 2cvh_A 97 SLKK----TVDS-NF-ALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNI-PVIVINQVHFDSRTEMTKPVAE 169 (220)
T ss_dssp HHHH----HCCT-TE-EEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTC-CEEEEECSSSSCTTSSCCSCCC
T ss_pred HHHH----Hhhc-CC-CEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCC-EEEEEeeEEEcCCCCccccCCC
Confidence 2222 2222 33 69999999998864322 344444 4444321122 355555532 1 112223
Q ss_pred HHHHhhceeEEEEeecCcccccccchhhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceEE
Q 022893 198 SVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKF 266 (290)
Q Consensus 198 ~ALe~LAs~vi~vep~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~I~~~~~~f 266 (290)
..++++++.++.++-.... ....+.|. |.|+|.. -..-.|.|..+|+..
T Consensus 170 ~~~~~~~d~vi~l~~~~~~------------------~~r~l~v~-K~r~~~~-~~~~~f~I~~~Gi~~ 218 (220)
T 2cvh_A 170 QTLGYRCKDILRLDKLPKP------------------GLRVAVLE-RHRFRPE-GLMAYFRITERGIED 218 (220)
T ss_dssp HHHHHTSSEEEEEEECSST------------------TEEEEEEE-ECSSSCT-TCEEEEEEETTEEEE
T ss_pred cceeecCcEEEEEEEecCC------------------CEEEEEEE-eCCCCCC-CceEEEEEeCCceec
Confidence 4899999999999854321 22344443 5566654 445689999888765
No 9
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.58 E-value=0.014 Score=53.51 Aligned_cols=157 Identities=12% Similarity=0.039 Sum_probs=78.1
Q ss_pred cCcEEEEEecCC--hHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHHH
Q 022893 55 SRGLVVVAYSRS--PSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (290)
Q Consensus 55 ~~~V~vlafe~s--pe~y~~~lk~~G~d~~~~~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (290)
+..+.++.+|.+ ++.+.+.+++.|++.+..-+++.+.+.++ . .++..++..
T Consensus 141 ~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~----~-----------------------~~~~~~l~~ 193 (324)
T 2z43_A 141 SGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN----T-----------------------DHQIAIVDD 193 (324)
T ss_dssp SCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS----H-----------------------HHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC----H-----------------------HHHHHHHHH
Confidence 568999999987 88888888888887532112465555321 0 011111122
Q ss_pred HHHhccCccCC-CCCcEEEEEechhHHHHhC-----Ch----HHHHHHHHhhhcCCc-ee-EEEEeec--cccc------
Q 022893 133 IIEQGKGLIGQ-GKDRFSIAIDSVSEMVRHA-----SI----SSVAGILSNLRSHDQ-VS-SIFWLLH--SDLH------ 192 (290)
Q Consensus 133 ~~e~~~~~~~~-~k~~~~VaIDSLS~LL~h~-----s~----~~v~~lL~~Lr~~~~-is-sV~~LlH--sDLH------ 192 (290)
+.+..+ + .++ -.|+|||++.+.+.. .. ..+.++++.|+.... .. .|+.+-| .+..
T Consensus 194 l~~~~~----~~~~~-~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~ 268 (324)
T 2z43_A 194 LQELVS----KDPSI-KLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDP 268 (324)
T ss_dssp HHHHHH----HCTTE-EEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-----------
T ss_pred HHHHHH----hccCC-CEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCC
Confidence 211111 1 233 689999999998641 11 235667777765321 11 2333333 2222
Q ss_pred -chhHHHHHHhhceeEEEEeecCcccccccchhhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceE
Q 022893 193 -EIKFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIK 265 (290)
Q Consensus 193 -e~~v~~ALe~LAs~vi~vep~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~I~~~~~~ 265 (290)
.|.--.+++|.+++++.++.... ..-.++| .|-|.+. .... .|.|...|+.
T Consensus 269 ~~~~gg~~l~~~~d~~l~l~r~~~-------------------~~r~~~v-~k~~~~p-~~~~-~f~I~~~Gi~ 320 (324)
T 2z43_A 269 TVAVGGHTLYHVPGIRIQLKKSRG-------------------NRRIARV-VDAPHLP-EGEV-VFALTEEGIR 320 (324)
T ss_dssp -------------CEEEEEEECST-------------------TEEEEEE-EECSSSC-CEEE-EEEEETTEEE
T ss_pred CCCCchHHHHhhCcEEEEEEEcCC-------------------CeEEEEE-EECCCCC-ceEE-EEEEeCCCcc
Confidence 12233479999999999984321 1123333 3445653 2333 8999988875
No 10
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.18 E-value=0.089 Score=50.96 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=62.4
Q ss_pred EEEEEechhHHHHh----CChHHHHHHHHhhhcCCc-ee-EEEEeeccc---------------ccchhHHHHHHhhcee
Q 022893 148 FSIAIDSVSEMVRH----ASISSVAGILSNLRSHDQ-VS-SIFWLLHSD---------------LHEIKFTSVLEYLSSM 206 (290)
Q Consensus 148 ~~VaIDSLS~LL~h----~s~~~v~~lL~~Lr~~~~-is-sV~~LlHsD---------------LHe~~v~~ALe~LAs~ 206 (290)
-.|+||+|..|-.. .....+...++.|+...+ .. .|+.+.|-- +++-+-.+++++.|++
T Consensus 356 ~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~ 435 (503)
T 1q57_A 356 DVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDT 435 (503)
T ss_dssp SEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSE
T ss_pred CEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhhecCcE
Confidence 58999999876321 112445556666655322 11 355555532 1222335789999999
Q ss_pred EEEEeecCcccccccchhhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceEEEeccCcchh
Q 022893 207 VASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKFTPVLSEDEI 275 (290)
Q Consensus 207 vi~vep~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~I~~~~~~f~~~~~~~~~ 275 (290)
++.++..... + +.+...+.|...|.+|..-. .-.+.++....+|.++...+.+
T Consensus 436 vi~l~r~~~~-----~----------~~~~~~l~v~K~R~~G~~g~-~~~l~f~~~~~~f~~~~~~~~~ 488 (503)
T 1q57_A 436 IIALERNQQG-----D----------MPNLVLVRILKCRFTGDTGI-AGYMEYNKETGWLEPSSYSGEE 488 (503)
T ss_dssp EEEEEECSSS-----S----------CTTEEEEEEEEETTTCCCEE-EEEEEECTTTCCEEEECCCC--
T ss_pred EEEEEeCCcC-----C----------CCCeEEEEEEeccCCCCCCc-eEEEEEEcCCceEecCCCCCcc
Confidence 9999854321 0 00223444443333785422 2256778888899888776654
No 11
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.95 E-value=0.14 Score=46.87 Aligned_cols=108 Identities=13% Similarity=0.122 Sum_probs=61.2
Q ss_pred EEEEEechhHHHHhC----ChHHHHHHHHhhhcCCc-ee-EEEEeec--cccc----------chhHHHHHHhhceeEEE
Q 022893 148 FSIAIDSVSEMVRHA----SISSVAGILSNLRSHDQ-VS-SIFWLLH--SDLH----------EIKFTSVLEYLSSMVAS 209 (290)
Q Consensus 148 ~~VaIDSLS~LL~h~----s~~~v~~lL~~Lr~~~~-is-sV~~LlH--sDLH----------e~~v~~ALe~LAs~vi~ 209 (290)
..|+||+|..|-... ....+..+++.|+...+ .. .|+.+-| .+.. +-+-.+++|+.|++++.
T Consensus 183 ~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi~ 262 (315)
T 3bh0_A 183 VIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEF 262 (315)
T ss_dssp EEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEEE
T ss_pred eEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEEE
Confidence 389999999875321 12456666666665322 11 3555555 2222 12334789999999999
Q ss_pred EeecCcccccccchhhhhhhhhhcccceeEEE-EEecCCCCeeeeEeEEEEEcCceEEEecc
Q 022893 210 VEPFNQAAFGQRVDLENLSMLEQNFRKGKFHV-RFKRRNGRVRVMCEEILVELAGIKFTPVL 270 (290)
Q Consensus 210 vep~~~~~~~~~~~~~~~~~~~~n~~~~~~~V-r~kRr~GRV~~~~E~f~I~~~~~~f~~~~ 270 (290)
++.... |.+. +..++...+ ..|.|+|..- .-.+.+.+...+|.+..
T Consensus 263 L~r~~~---~~~~----------~~~~~~~~l~v~K~R~G~~g--~~~l~f~~~~~~f~~~~ 309 (315)
T 3bh0_A 263 LYRDDY---YDKE----------SESKNIVEVIIAKHRDGPVG--TVSLAFIKEYGNFVNLE 309 (315)
T ss_dssp EEEHHH---HCTT----------CTTTTEEEEEEEEETTSCCE--EEEEEEEGGGTEEEECC
T ss_pred Eecccc---cCcc----------ccCCCcEEEEEECCcCCCCc--eEEEEEECCCCeEecCC
Confidence 984321 1100 001222333 3355788743 33478888888998753
No 12
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.74 E-value=0.13 Score=43.68 Aligned_cols=178 Identities=15% Similarity=0.042 Sum_probs=92.4
Q ss_pred ccCcEEEEEecCChHHHHHHHHhcCCCcCC--CCCeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHH
Q 022893 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIAS--SHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYS 131 (290)
Q Consensus 54 q~~~V~vlafe~spe~y~~~lk~~G~d~~~--~~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~ 131 (290)
+..++.++..+.+++...+.+++.|++... ...++.+.|.+..+.+...... .... ...++..+..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~ 125 (251)
T 2ehv_A 58 YGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEK-----------FVLE-DRFNVDNFLR 125 (251)
T ss_dssp HCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------------------------------CCHHHHHH
T ss_pred CCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccccccccc-----------eecc-CcccHHHHHH
Confidence 456889999999999888888878876442 1235888888776543211100 0000 0112222222
Q ss_pred HHHHhccCccCCCCCcEEEEEechhHHHH-----hCChHHHHHHHHhhhcCCceeEEEEeecccccch---hHHHHHHhh
Q 022893 132 LIIEQGKGLIGQGKDRFSIAIDSVSEMVR-----HASISSVAGILSNLRSHDQVSSIFWLLHSDLHEI---KFTSVLEYL 203 (290)
Q Consensus 132 ~~~e~~~~~~~~~k~~~~VaIDSLS~LL~-----h~s~~~v~~lL~~Lr~~~~issV~~LlHsDLHe~---~v~~ALe~L 203 (290)
.+.+... ..++ -.+++|..+.+|. ...-..+..+++.++.. . ..|+..-|. +.+. .....++++
T Consensus 126 ~~~~~l~----~~~p-~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~-g-~tii~vtH~-~~~~~~~~~~~~i~~~ 197 (251)
T 2ehv_A 126 YIYRVVK----AINA-KRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM-G-VTTILTTEA-PDPQHGKLSRYGIEEF 197 (251)
T ss_dssp HHHHHHH----HTTC-SEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH-C-CEEEEEECC-C----CCSSSSSCGGG
T ss_pred HHHHHHH----hhCC-CEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHC-C-CeEEEEECC-CCCCcccccccChhhE
Confidence 2222110 1234 5799999999997 22223477777777653 2 235545553 2221 111234788
Q ss_pred c-eeEEEEeecCcccccccchhhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceEEEe
Q 022893 204 S-SMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKFTP 268 (290)
Q Consensus 204 A-s~vi~vep~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~I~~~~~~f~~ 268 (290)
+ +.++.+.-.... +.....+.|. |-|.++.....-.|.|.+.|+.+.|
T Consensus 198 ~aD~vi~l~~~~~~----------------~~~~r~l~i~-K~r~~~~~~~~~~~~i~~~Gi~v~~ 246 (251)
T 2ehv_A 198 IARGVIVLDLQEKN----------------IELKRYVLIR-KMRETRHSMKKYPFEIGPNGIVVYP 246 (251)
T ss_dssp GCSEEEEEEEEECS----------------SSEEEEEEEE-EETTCCCCCBEEEEEEETTEEEECC
T ss_pred eeeEEEEEeeeccC----------------CeeEEEEEEE-EccCCCcCCceEEEEECCCCeEEcC
Confidence 8 999988632111 0012334444 3355555556778999998888876
No 13
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.24 E-value=0.1 Score=48.45 Aligned_cols=161 Identities=16% Similarity=0.155 Sum_probs=84.0
Q ss_pred ccCcEEEEEecCC--hHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHH
Q 022893 54 QSRGLVVVAYSRS--PSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYS 131 (290)
Q Consensus 54 q~~~V~vlafe~s--pe~y~~~lk~~G~d~~~~~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~ 131 (290)
++..+.++.+|.+ ++.+.+.+++.|++.+..-+++.+.+.+ +...- ..-+..+ .
T Consensus 155 ~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~----~~e~~-------------------~~ll~~l-~ 210 (343)
T 1v5w_A 155 PGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY----TSEHQ-------------------MELLDYV-A 210 (343)
T ss_dssp CCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC----STTHH-------------------HHHHHHH-H
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC----CHHHH-------------------HHHHHHH-H
Confidence 3568999999996 8888888888888753111346555432 11100 0001111 1
Q ss_pred HHHHhccCccCCCCCcEEEEEechhHHHHhC-----Ch----HHHHHHHHhhhcCCc-ee-EEEEeec--ccccc-----
Q 022893 132 LIIEQGKGLIGQGKDRFSIAIDSVSEMVRHA-----SI----SSVAGILSNLRSHDQ-VS-SIFWLLH--SDLHE----- 193 (290)
Q Consensus 132 ~~~e~~~~~~~~~k~~~~VaIDSLS~LL~h~-----s~----~~v~~lL~~Lr~~~~-is-sV~~LlH--sDLHe----- 193 (290)
..+.. . ..+. -+|+|||++.+.+.. .. ..+.++++.|+.... .. .|+.+-| .+...
T Consensus 211 ~~i~~---~--~~~~-~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~ 284 (343)
T 1v5w_A 211 AKFHE---E--AGIF-KLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQ 284 (343)
T ss_dssp HHHHH---S--CSSE-EEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-----------
T ss_pred HHHHh---c--CCCc-cEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCccccC
Confidence 22221 0 0233 689999999998652 11 135666666665321 11 2333333 22211
Q ss_pred --h-hHHH--HHHhhceeEEEEeecCcccccccchhhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceEE
Q 022893 194 --I-KFTS--VLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKF 266 (290)
Q Consensus 194 --~-~v~~--ALe~LAs~vi~vep~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~I~~~~~~f 266 (290)
+ .+.+ +++|.+++++.+.-... ....++| .|-|++. .... .|.|...|+..
T Consensus 285 g~~~~~~gg~~i~~~ad~~l~l~r~~~-------------------~~r~~~v-~K~r~~p-~~~~-~f~I~~~Gi~~ 340 (343)
T 1v5w_A 285 ADPKKPIGGHILAHASTTRISLRKGRG-------------------ELRIAKI-YDSPEMP-ENEA-TFAITAGGIGD 340 (343)
T ss_dssp --------CCTTTTSSSEEEEEEESST-------------------TEEEEEE-EECTTCC-SSCE-EEEEETTEEEE
T ss_pred CCCCcCCchHHHHHhCCEEEEEEEcCC-------------------CEEEEEE-EECCCCC-CeeE-EEEEeCCCccC
Confidence 1 1222 68999999999984311 1223444 3445563 2333 89999988764
No 14
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.72 E-value=1.3 Score=42.42 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=61.4
Q ss_pred EEEEEechhHHHHhC-----ChHHHHHHHHhhhcCC-cee-EEEEeec--cccc----------chhHHHHHHhhceeEE
Q 022893 148 FSIAIDSVSEMVRHA-----SISSVAGILSNLRSHD-QVS-SIFWLLH--SDLH----------EIKFTSVLEYLSSMVA 208 (290)
Q Consensus 148 ~~VaIDSLS~LL~h~-----s~~~v~~lL~~Lr~~~-~is-sV~~LlH--sDLH----------e~~v~~ALe~LAs~vi 208 (290)
-+|+||++..+.... ....+..+++.|+... +.. .|+.+-| .+.. +-+-.+++++.|++++
T Consensus 315 ~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi 394 (454)
T 2r6a_A 315 GMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVA 394 (454)
T ss_dssp CEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEE
T ss_pred CEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEE
Confidence 589999999987431 3445555556665432 112 3666766 1111 1122358999999999
Q ss_pred EEeecCcccccccchhhhhhhhhhcccceeEEEE-EecCCCCeeeeEeEEEEEcCceEEEeccC
Q 022893 209 SVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVR-FKRRNGRVRVMCEEILVELAGIKFTPVLS 271 (290)
Q Consensus 209 ~vep~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr-~kRr~GRV~~~~E~f~I~~~~~~f~~~~~ 271 (290)
.+..... |.++-+ .++...++ .|-|+|..-. -.+.+.+...+|.....
T Consensus 395 ~l~r~~~---~~~~~~----------~~~~~~l~i~K~R~G~~g~--v~l~f~~~~~~f~~~~~ 443 (454)
T 2r6a_A 395 FLYRDDY---YNKDSE----------NKNIIEIIIAKQRNGPVGT--VQLAFIKEYNKFVNLER 443 (454)
T ss_dssp EEEETTC--------------------CCEEEEEEEEESSSCCEE--EEEEEETTTTEEECC--
T ss_pred EEecccc---cCcccC----------CCCeEEEEEecccCCCCeE--EEEEEEcCccEEeCCCC
Confidence 9985432 111100 12333333 3447886532 36778888899987654
No 15
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.53 E-value=1.3 Score=42.31 Aligned_cols=184 Identities=13% Similarity=0.094 Sum_probs=90.9
Q ss_pred cCcEEEEEecCChHHHHHHHH--hcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccc----cchhhhH
Q 022893 55 SRGLVVVAYSRSPSFYVDLLK--RRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQ----DVRNLDK 128 (290)
Q Consensus 55 ~~~V~vlafe~spe~y~~~lk--~~G~d~~~~~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~----~v~~L~s 128 (290)
+..|.++.+|-+++++..-+- ..|++... +. .+.-++..|.+-....+.-... .+-+.. ++.++.+
T Consensus 229 g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~----l~--~g~l~~~~~~~~~~a~~~l~~~--~l~i~d~~~~s~~~l~~ 300 (444)
T 2q6t_A 229 GVGVGIYSLEMPAAQLTLRMMCSEARIDMNR----VR--LGQLTDRDFSRLVDVASRLSEA--PIYIDDTPDLTLMEVRA 300 (444)
T ss_dssp CCCEEEEESSSCHHHHHHHHHHHHTTCCTTT----CC--GGGCCHHHHHHHHHHHHHHHTS--CEEEECCTTCBHHHHHH
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCHHH----Hh--CCCCCHHHHHHHHHHHHHHhcC--CEEEECCCCCCHHHHHH
Confidence 568999999999998877532 45666432 21 2222233343210000000000 000000 2334443
Q ss_pred HHHHHHHhccCccCCCCCcEEEEEechhHHHHh-------CChHHHHHHHHhhhcCCc-ee-EEEEeec--cccc-----
Q 022893 129 LYSLIIEQGKGLIGQGKDRFSIAIDSVSEMVRH-------ASISSVAGILSNLRSHDQ-VS-SIFWLLH--SDLH----- 192 (290)
Q Consensus 129 l~~~~~e~~~~~~~~~k~~~~VaIDSLS~LL~h-------~s~~~v~~lL~~Lr~~~~-is-sV~~LlH--sDLH----- 192 (290)
.+.+... +.+. -.|+||+|..|... ...+.+..+++.|+.... .. .|+.+-| .+..
T Consensus 301 ~~~~l~~-------~~~~-~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~ 372 (444)
T 2q6t_A 301 RARRLVS-------QNQV-GLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNK 372 (444)
T ss_dssp HHHHHHH-------HSCC-CEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSC
T ss_pred HHHHHHH-------HcCC-CEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCC
Confidence 3223222 1233 58999999988532 112345555555554321 11 3555555 2222
Q ss_pred -----chhHHHHHHhhceeEEEEeecCcccccccchhhhhhhhhhcccceeEEEE-EecCCCCeeeeEeEEEEEcCceEE
Q 022893 193 -----EIKFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVR-FKRRNGRVRVMCEEILVELAGIKF 266 (290)
Q Consensus 193 -----e~~v~~ALe~LAs~vi~vep~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr-~kRr~GRV~~~~E~f~I~~~~~~f 266 (290)
+-+-.+++++.|++++.+..... |.++- ..++...+. .|-|+|..- .-.+.+.+...+|
T Consensus 373 ~p~l~dlr~Sg~ie~~aD~vi~L~r~~~---~~~~~----------~~~~~~~l~i~K~R~g~~g--~~~l~f~~~~~~f 437 (444)
T 2q6t_A 373 RPMLSDLRESGSIEQDADLVMFIYRDEY---YNPHS----------EKAGIAEIIVGKQRNGPTG--TVELQFHASHVRF 437 (444)
T ss_dssp SCCGGGGGGGCTTGGGCSEEEEEEEGGG---TCSSS----------SCCSEEEEEEEECSSSCCE--EEEEEEETTTTEE
T ss_pred CCChHHhcchhHHHHhCCEEEEEecccc---cCCcC----------CCCCeEEEEEEecCCCCce--EEEEEEECCccEE
Confidence 22334589999999999974321 11000 012333333 355788653 2367778888899
Q ss_pred Eec
Q 022893 267 TPV 269 (290)
Q Consensus 267 ~~~ 269 (290)
...
T Consensus 438 ~~~ 440 (444)
T 2q6t_A 438 NDL 440 (444)
T ss_dssp ECC
T ss_pred ecC
Confidence 765
No 16
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.45 E-value=0.53 Score=45.46 Aligned_cols=108 Identities=13% Similarity=0.113 Sum_probs=61.3
Q ss_pred EEEEEechhHHHHhC----ChHHHHHHHHhhhcCCc-ee-EEEEeecc--cccc----------hhHHHHHHhhceeEEE
Q 022893 148 FSIAIDSVSEMVRHA----SISSVAGILSNLRSHDQ-VS-SIFWLLHS--DLHE----------IKFTSVLEYLSSMVAS 209 (290)
Q Consensus 148 ~~VaIDSLS~LL~h~----s~~~v~~lL~~Lr~~~~-is-sV~~LlHs--DLHe----------~~v~~ALe~LAs~vi~ 209 (290)
..|+||+|..|-... ..+.+....+.|+...+ .. .|+.+-|- +... -+-.+++|+.|++++.
T Consensus 312 ~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~ 391 (444)
T 3bgw_A 312 VIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEF 391 (444)
T ss_dssp EEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEE
T ss_pred eEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEE
Confidence 499999999864221 12355666666665322 12 35666562 2221 1234589999999999
Q ss_pred EeecCcccccccchhhhhhhhhhcccceeEEE-EEecCCCCeeeeEeEEEEEcCceEEEecc
Q 022893 210 VEPFNQAAFGQRVDLENLSMLEQNFRKGKFHV-RFKRRNGRVRVMCEEILVELAGIKFTPVL 270 (290)
Q Consensus 210 vep~~~~~~~~~~~~~~~~~~~~n~~~~~~~V-r~kRr~GRV~~~~E~f~I~~~~~~f~~~~ 270 (290)
+..... |.+. +..++...+ ..|.|+|..- .-.+.+.+...+|....
T Consensus 392 L~r~~~---~~~~----------~~~~~~~~l~i~K~R~G~~g--~v~l~f~~~~~rf~~~~ 438 (444)
T 3bgw_A 392 LYRDDY---YDKE----------SESKNIVEVIIAKHRDGPVG--TVSLAFIKEYGNFVNLE 438 (444)
T ss_dssp CCBGGG---TCTT----------CSSTTEEEEEEEEESSSCCE--EEEEEEETTTTEEECCC
T ss_pred Eecccc---cccc----------ccCCCeEEEEEEcccCCCCe--EEEEEEEcCccEEecCC
Confidence 974321 1110 001233333 3355788754 33778888889998753
No 17
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.12 E-value=0.7 Score=38.89 Aligned_cols=157 Identities=9% Similarity=0.033 Sum_probs=75.4
Q ss_pred cCcEEEEEecC--ChHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHHH
Q 022893 55 SRGLVVVAYSR--SPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (290)
Q Consensus 55 ~~~V~vlafe~--spe~y~~~lk~~G~d~~~~~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (290)
..+++++..+. +++.+.+.+++.|++.+..-+++.+.+.++ . .++..++..
T Consensus 58 ~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~-----------------------~~~~~~~~~ 110 (243)
T 1n0w_A 58 EGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN----T-----------------------DHQTQLLYQ 110 (243)
T ss_dssp SSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS----H-----------------------HHHHHHHHH
T ss_pred CCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC----H-----------------------HHHHHHHHH
Confidence 56899999988 477777777888776421112344433211 0 011111111
Q ss_pred HHHhccCccCCCCCcEEEEEechhHHHHhC-------ChH--HHHHHHHhhhcCC-ce-eEEEEeecc--cccc------
Q 022893 133 IIEQGKGLIGQGKDRFSIAIDSVSEMVRHA-------SIS--SVAGILSNLRSHD-QV-SSIFWLLHS--DLHE------ 193 (290)
Q Consensus 133 ~~e~~~~~~~~~k~~~~VaIDSLS~LL~h~-------s~~--~v~~lL~~Lr~~~-~i-ssV~~LlHs--DLHe------ 193 (290)
+.+..+ +.++ -.|+||+++.++... +-. .+..+++.|+... +. ..|+..-|. +...
T Consensus 111 ~~~~~~----~~~~-~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~ 185 (243)
T 1n0w_A 111 ASAMMV----ESRY-ALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAA 185 (243)
T ss_dssp HHHHHH----HSCE-EEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------
T ss_pred HHHHHh----cCCc-eEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCC
Confidence 111110 1233 689999999988642 100 1444444444321 11 235555553 2211
Q ss_pred ----hhHHHHHHhhceeEEEEeecCcccccccchhhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceE
Q 022893 194 ----IKFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIK 265 (290)
Q Consensus 194 ----~~v~~ALe~LAs~vi~vep~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~I~~~~~~ 265 (290)
+.--.+++++++.++.++-... ..-.+.|. |-|.+... . -.|.|...|+.
T Consensus 186 ~~~~~~g~~~~~~~~d~vi~l~~~~~-------------------~~r~l~v~-K~r~~~~~-~-~~f~I~~~Gi~ 239 (243)
T 1n0w_A 186 DPKKPIGGNIIAHASTTRLYLRKGRG-------------------ETRICKIY-DSPCLPEA-E-AMFAINADGVG 239 (243)
T ss_dssp -----------CCTTCEEEEEEECST-------------------TEEEEEEC-CBTTBSCE-E-EEEEEETTEEE
T ss_pred CcccCCccChhhhcCcEEEEEEEcCC-------------------CeEEEEEE-ECCCCCCC-e-EEEEEeCCccc
Confidence 1112358999999999985311 11233332 33555432 2 57889887765
No 18
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=92.95 E-value=0.37 Score=46.14 Aligned_cols=110 Identities=21% Similarity=0.246 Sum_probs=72.0
Q ss_pred hhHHHHHHHHhccCccCCCCCcEEEEEechhHHHHhC----ChHHHHHHHHhhhcC----CceeEEEEeecccccchhHH
Q 022893 126 LDKLYSLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHA----SISSVAGILSNLRSH----DQVSSIFWLLHSDLHEIKFT 197 (290)
Q Consensus 126 L~sl~~~~~e~~~~~~~~~k~~~~VaIDSLS~LL~h~----s~~~v~~lL~~Lr~~----~~issV~~LlHsDLHe~~v~ 197 (290)
+.+++..+.+..+. +..+. .=|+|=||-.-+... ....+.+||+.||.- .....++..++++|-.++.+
T Consensus 200 y~~lL~~I~~~i~~--~~~~i-lRIvI~SLgSP~wy~~~~~~~~~ll~FL~~LRaLlR~~~~~~v~~iTlP~~l~~~~l~ 276 (361)
T 4a8j_A 200 VSTILSQIEQTIKR--NDKKL-IRIVIPSLLHPAMYPPKMFESSEIIGLMHGVRSLVKKYYERVVLFASISIDIITPPLL 276 (361)
T ss_dssp HHHHHHHHHHHHHH--TTTSE-EEEEETTTTCTTTSCGGGGBHHHHHHHHHHHHHHHHHTTTTEEEEEEEECTTSCHHHH
T ss_pred HHHHHHHHHHHHhc--CCCce-EEEEecCCCCcccCCCcccCHHHHHHHHHHHHHHHhhcCCceEEEEEEChHHcChHHH
Confidence 44455554443321 12222 668888876655432 477899999999984 33335678899999999999
Q ss_pred HHHHhhceeEEEEeecCcccccccchhhh-hhhhhhcc----cceeEEEEEec
Q 022893 198 SVLEYLSSMVASVEPFNQAAFGQRVDLEN-LSMLEQNF----RKGKFHVRFKR 245 (290)
Q Consensus 198 ~ALe~LAs~vi~vep~~~~~~~~~~~~~~-~~~~~~n~----~~~~~~Vr~kR 245 (290)
.-+|++++++|.|+|.+.. ++. ++..=+|+ ++|.++|+.--
T Consensus 277 ~rle~l~D~vi~L~pF~~~-------~~~~~~~~yk~~p~~~~~GLl~V~KLP 322 (361)
T 4a8j_A 277 VLLRNMFDSVINLEPFNQE-------MTEFLERVYKSQPGKIQHGLVHILKLP 322 (361)
T ss_dssp HHHHHHCSEEEEEEECCHH-------HHHHHHHHTTTCGGGCCCEEEEEEECT
T ss_pred HHHHHhCcEEEEeeecCCc-------hhhhcccccccCcccccceEEEEEecc
Confidence 9999999999999997542 111 11122332 57888877643
No 19
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.11 E-value=2.4 Score=40.54 Aligned_cols=157 Identities=13% Similarity=0.077 Sum_probs=81.7
Q ss_pred cCcEEEEEecCC--hHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHHH
Q 022893 55 SRGLVVVAYSRS--PSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (290)
Q Consensus 55 ~~~V~vlafe~s--pe~y~~~lk~~G~d~~~~~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (290)
+.++.++..+.+ ++...+..++.|++.+..-.++.+.+.+ +.... ...+..+...
T Consensus 212 ~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~----~~~~~-------------------~~~l~~~~~~ 268 (400)
T 3lda_A 212 EGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY----NADHQ-------------------LRLLDAAAQM 268 (400)
T ss_dssp SSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC----SHHHH-------------------HHHHHHHHHH
T ss_pred CCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC----ChHHH-------------------HHHHHHHHHH
Confidence 457889998875 6667777778887654211235544321 11000 0011111111
Q ss_pred HHHhccCccCCCCCcEEEEEechhHHHHhCCh------------HHHHHHHHhhhcCCceeEEEEeecc--ccc------
Q 022893 133 IIEQGKGLIGQGKDRFSIAIDSVSEMVRHASI------------SSVAGILSNLRSHDQVSSIFWLLHS--DLH------ 192 (290)
Q Consensus 133 ~~e~~~~~~~~~k~~~~VaIDSLS~LL~h~s~------------~~v~~lL~~Lr~~~~issV~~LlHs--DLH------ 192 (290)
+.+ .++ -.|+||++..++...-- ..+.+.|+.|.+... ..||..-|. ..-
T Consensus 269 l~~--------~~~-~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~g-itVIlv~Hv~~~~~g~~~~~ 338 (400)
T 3lda_A 269 MSE--------SRF-SLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFG-VAVVVTNQVVAQVDGGMAFN 338 (400)
T ss_dssp HHH--------SCE-EEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHC-CEEEEEEEC-----------
T ss_pred HHh--------cCC-ceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcC-CEEEEEEeecccCCcccccc
Confidence 111 234 68899999998764211 234444555443112 246666665 221
Q ss_pred ----chhHHHHHHhhceeEEEEeecCcccccccchhhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceEE
Q 022893 193 ----EIKFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKF 266 (290)
Q Consensus 193 ----e~~v~~ALe~LAs~vi~vep~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~I~~~~~~f 266 (290)
.|---..++|++++++.++-... .. +.-...|.|.+.... -.|.|...|++-
T Consensus 339 g~~~~p~gg~~l~~~ad~vl~L~~~~g-------------------~~-R~l~v~K~R~~p~~e--~~F~It~~Gi~~ 394 (400)
T 3lda_A 339 PDPKKPIGGNIMAYSSTTRLGFKKGKG-------------------CQ-RLCKVVDSPCLPEAE--CVFAIYEDGVGD 394 (400)
T ss_dssp ---------CHHHHHCSEEEEEEECST-------------------TE-EEEEEEECSSSCSCE--EEEEEETTEEEC
T ss_pred CCCccCCchhHHHHhcceEEEEEecCC-------------------Cc-EEEEEEcCCCCCCCc--eEEEEeCCcccc
Confidence 11123679999999999985421 12 333344556665443 689999888763
No 20
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.67 E-value=0.57 Score=53.71 Aligned_cols=117 Identities=12% Similarity=0.180 Sum_probs=70.0
Q ss_pred ccCcEEEEEecCChHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHHHH
Q 022893 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (290)
Q Consensus 54 q~~~V~vlafe~spe~y~~~lk~~G~d~~~~~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~~ 133 (290)
+++.++++.+|.+++..+ ++..|+|.+ ++.+. +|.. . .++..++..+
T Consensus 61 ~Ge~vlYI~tEes~~~~r--a~~lG~dl~----~i~v~----~p~~-----~------------------e~ll~il~~L 107 (2050)
T 3cmu_A 61 EGKTCAFIDAEHALDPIY--ARKLGVDID----NLLCS----QPDT-----G------------------EQALEICDAL 107 (2050)
T ss_dssp TTCCEEEECTTSCCCHHH--HHHTTCCTT----TCEEE----CCSS-----H------------------HHHHHHHHHH
T ss_pred cCCceEEEEccCcchhhH--HhhhccCcc----cceec----CCCc-----H------------------HHHHHHHHHH
Confidence 477999999999998877 567788754 35443 3410 1 1222333333
Q ss_pred HHhccCccCCCCCcEEEEEechhHHHHhCCh-------------HHHHHHHHhhhcC---CceeEEEEeec---------
Q 022893 134 IEQGKGLIGQGKDRFSIAIDSVSEMVRHASI-------------SSVAGILSNLRSH---DQVSSIFWLLH--------- 188 (290)
Q Consensus 134 ~e~~~~~~~~~k~~~~VaIDSLS~LL~h~s~-------------~~v~~lL~~Lr~~---~~issV~~LlH--------- 188 (290)
.+. .+. -.|+||||+.+.+.... ..+-++++.|++. -.+. |+..-|
T Consensus 108 ~~~-------~~~-~lVVIDSISaL~~~~e~~~e~~d~~~~~raR~l~~~l~~L~~~ak~~git-VVlTNQv~~~~g~~f 178 (2050)
T 3cmu_A 108 ARS-------GAV-DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL-LIFINQIRMKIGVMF 178 (2050)
T ss_dssp HHH-------TCC-SEEEESCGGGCCCHHHHHSCSSSCCTTHHHHHHHHHHHHHHHHHHTTTCE-EEEEECCEECTTCCS
T ss_pred Hhc-------cCC-cEEEEcChHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhCCe-EEEEEeccccccccc
Confidence 331 123 58999999998875311 1234455555442 1222 222222
Q ss_pred ccccchhHHHHHHhhceeEEEEee
Q 022893 189 SDLHEIKFTSVLEYLSSMVASVEP 212 (290)
Q Consensus 189 sDLHe~~v~~ALe~LAs~vi~vep 212 (290)
++-+.+..-.+++|+++++|.++-
T Consensus 179 g~~~~~~gG~~l~~iaD~VI~L~r 202 (2050)
T 3cmu_A 179 GNPETTTGGNALKFYASVRLDIRR 202 (2050)
T ss_dssp SCCEECSSHHHHHHHEEEEEEEEE
T ss_pred CcccccCCcchhhhhCcEEEEEEe
Confidence 344556677899999999999973
No 21
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=85.17 E-value=4.5 Score=38.12 Aligned_cols=118 Identities=11% Similarity=0.163 Sum_probs=64.8
Q ss_pred ccCcEEEEEecCChHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHHHH
Q 022893 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (290)
Q Consensus 54 q~~~V~vlafe~spe~y~~~lk~~G~d~~~~~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~~ 133 (290)
++..|.++.+|.+.+... +++.|++.+ ++.+.| |... .++...+...
T Consensus 101 ~g~~vlyi~~E~s~~~~~--a~~~g~d~~----~l~i~~----~~~~-----------------------e~~l~~l~~l 147 (366)
T 1xp8_A 101 AGGTCAFIDAEHALDPVY--ARALGVNTD----ELLVSQ----PDNG-----------------------EQALEIMELL 147 (366)
T ss_dssp TTCCEEEEESSCCCCHHH--HHHTTCCGG----GCEEEC----CSSH-----------------------HHHHHHHHHH
T ss_pred CCCeEEEEECCCChhHHH--HHHcCCCHH----Hceeec----CCcH-----------------------HHHHHHHHHH
Confidence 466899999999887653 566687743 455543 3211 1222221222
Q ss_pred HHhccCccCCCCCcEEEEEechhHHHHhCC-----------h--HHHHHHHHhhhcC---CceeEEEEeec--ccc----
Q 022893 134 IEQGKGLIGQGKDRFSIAIDSVSEMVRHAS-----------I--SSVAGILSNLRSH---DQVSSIFWLLH--SDL---- 191 (290)
Q Consensus 134 ~e~~~~~~~~~k~~~~VaIDSLS~LL~h~s-----------~--~~v~~lL~~Lr~~---~~issV~~LlH--sDL---- 191 (290)
.. +.+. -+|+||||..|..+.. . ..+.+.|+.|+.. ..+ .||.+-| .+.
T Consensus 148 ~~-------~~~~-~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~-~VI~~nq~~~~~~~~f 218 (366)
T 1xp8_A 148 VR-------SGAI-DVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGT-AAIFINQVREKIGVMY 218 (366)
T ss_dssp HT-------TTCC-SEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCC-EEEEEEEC--------
T ss_pred Hh-------cCCC-CEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCC-EEEEEEecccccCccc
Confidence 22 1233 5899999999873211 1 2366778887532 112 2333323 221
Q ss_pred ---cchhHHHHHHhhceeEEEEeec
Q 022893 192 ---HEIKFTSVLEYLSSMVASVEPF 213 (290)
Q Consensus 192 ---He~~v~~ALe~LAs~vi~vep~ 213 (290)
..+.--.++++.|++++.+.-.
T Consensus 219 g~p~~~~gg~al~~~a~~rl~L~r~ 243 (366)
T 1xp8_A 219 GNPETTTGGRALKFYASVRLDVRKI 243 (366)
T ss_dssp -------CHHHHHHHCSEEEEEEEE
T ss_pred CCccccCCcchhhheeeEEEEEEec
Confidence 2233356899999999999743
No 22
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=82.78 E-value=28 Score=33.61 Aligned_cols=165 Identities=17% Similarity=0.196 Sum_probs=87.8
Q ss_pred ccCcEEEEEecCChHHHHHHHHhcCCCcCCC--CCeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHH
Q 022893 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASS--HDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYS 131 (290)
Q Consensus 54 q~~~V~vlafe~spe~y~~~lk~~G~d~~~~--~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~ 131 (290)
+++.+.++.++-+++.+...+++.|++.... ...+.+.|.+ |..+ +.++...+.-
T Consensus 308 ~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~--p~~L---------------------S~g~~q~~~~ 364 (525)
T 1tf7_A 308 NKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAY--PESA---------------------GLEDHLQIIK 364 (525)
T ss_dssp TTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCC--GGGS---------------------CHHHHHHHHH
T ss_pred CCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEec--cccC---------------------CHHHHHHHHH
Confidence 3667888999999888887776665542100 0012222211 1100 1122222222
Q ss_pred HHHHhccCccCCCCCcEEEEEechhHHHHhCC----hHHHHHHHHhhhcCCceeEEEEeeccc-ccch--hHHHHHHhhc
Q 022893 132 LIIEQGKGLIGQGKDRFSIAIDSVSEMVRHAS----ISSVAGILSNLRSHDQVSSIFWLLHSD-LHEI--KFTSVLEYLS 204 (290)
Q Consensus 132 ~~~e~~~~~~~~~k~~~~VaIDSLS~LL~h~s----~~~v~~lL~~Lr~~~~issV~~LlHsD-LHe~--~v~~ALe~LA 204 (290)
..+.. .++ -.|+||+++.|-...+ -..+.++++.++.. .+ .|+..-|.. .-+. +.-..+++++
T Consensus 365 a~~l~-------~~p-~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~-g~-tvilvsh~~~~~~~~~~~~~~l~~~~ 434 (525)
T 1tf7_A 365 SEIND-------FKP-ARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQE-EI-TGLFTNTSDQFMGAHSITDSHISTIT 434 (525)
T ss_dssp HHHHT-------TCC-SEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHT-TC-EEEEEEECSSSSCCCSSCSSCCTTTC
T ss_pred HHHHh-------hCC-CEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhC-CC-EEEEEECcccccCcccccCcccceee
Confidence 22221 234 5899999998866432 34566777777753 33 455555543 1111 1113468999
Q ss_pred eeEEEEeecCcccccccchhhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceEEEe
Q 022893 205 SMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKFTP 268 (290)
Q Consensus 205 s~vi~vep~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~I~~~~~~f~~ 268 (290)
+.++.+.-+... + ..-+.-...|.|.+......-.|.|...|+.+.+
T Consensus 435 D~vi~L~~ge~~----------------~-~~~R~l~v~K~R~~~~~~~~~~f~i~~~Gi~v~~ 481 (525)
T 1tf7_A 435 DTIILLQYVEIR----------------G-EMSRAINVFKMRGSWHDKAIREFMISDKGPDIKD 481 (525)
T ss_dssp SEEEEEEEEEET----------------T-EEEEEEEEEEESSSCCCCBCEEEEECSSCEEEEE
T ss_pred eEEEEEEEEEeC----------------C-EEEEEEEEEECCCCCCCCCEEEEEEcCCCEEEec
Confidence 999988643211 0 1122223335566665557778999999987543
No 23
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=81.50 E-value=17 Score=33.51 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=22.5
Q ss_pred CcEEEEEecCC--hHHHHHHHHhcCCCcCCCCCeEEEEec
Q 022893 56 RGLVVVAYSRS--PSFYVDLLKRRGIDIASSHDWIHILDC 93 (290)
Q Consensus 56 ~~V~vlafe~s--pe~y~~~lk~~G~d~~~~~~rv~i~D~ 93 (290)
..++++..+.+ ++.+.....+.|++.+....++.+.+.
T Consensus 166 G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~ 205 (349)
T 1pzn_A 166 GSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 205 (349)
T ss_dssp CEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEec
Confidence 35677777664 565666666666665433446666654
No 24
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=76.08 E-value=4.9 Score=45.49 Aligned_cols=115 Identities=12% Similarity=0.206 Sum_probs=66.6
Q ss_pred ccCcEEEEEecCChHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHHHH
Q 022893 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (290)
Q Consensus 54 q~~~V~vlafe~spe~y~~~lk~~G~d~~~~~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~~ 133 (290)
+++.++++.++.++++.. +++.|.+.+ ++.+.+ |. ...++..++..+
T Consensus 61 ~G~~vlYI~te~~~~~l~--~~~lg~dl~----~i~i~~----p~-----------------------t~e~l~~ll~~L 107 (1706)
T 3cmw_A 61 EGKTCAFIDAEHALDPIY--ARKLGVDID----NLLCSQ----PD-----------------------TGEQALEICDAL 107 (1706)
T ss_dssp TTCCEEEECTTSCCCHHH--HHHTTCCGG----GCEEEC----CS-----------------------SHHHHHHHHHHH
T ss_pred CCCceEEEEecCccHHHH--HHhhccCcc----ceeeec----cC-----------------------cHHHHHHHHHHH
Confidence 467999999999988777 466677643 455432 31 011233333443
Q ss_pred HHhccCccCCCCCcEEEEEechhHHHHhCCh-------------HHHHHHHHhhhcC----CceeEEEEeec--------
Q 022893 134 IEQGKGLIGQGKDRFSIAIDSVSEMVRHASI-------------SSVAGILSNLRSH----DQVSSIFWLLH-------- 188 (290)
Q Consensus 134 ~e~~~~~~~~~k~~~~VaIDSLS~LL~h~s~-------------~~v~~lL~~Lr~~----~~issV~~LlH-------- 188 (290)
.+. .++ -.|+||||+.+.+.... ..+.+++.+|.+. ... |+..-+
T Consensus 108 ~~~-------~~~-~LVVIDSLt~L~~~~e~e~~~~~~~~~~~~r~~~~ll~~L~~~ake~~~t--VIvTNqv~s~~g~~ 177 (1706)
T 3cmw_A 108 ARS-------GAV-DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL--LIFINQIRMKIGVM 177 (1706)
T ss_dssp HHH-------TCC-SEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCE--EEEEECEEECTTCC
T ss_pred Hhc-------cCC-CEEEEcchhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHcCCE--EEEEeecccccccc
Confidence 331 123 58999999998876421 1234445444442 211 222211
Q ss_pred -ccccchhHHHHHHhhceeEEEEe
Q 022893 189 -SDLHEIKFTSVLEYLSSMVASVE 211 (290)
Q Consensus 189 -sDLHe~~v~~ALe~LAs~vi~ve 211 (290)
+|-+.+-.-..++|.+++++.++
T Consensus 178 fgd~~~a~~g~~l~h~ad~~I~L~ 201 (1706)
T 3cmw_A 178 FGNPETTTGGNALKFYASVRLDIR 201 (1706)
T ss_dssp SSCCEEESSCSHHHHHEEEEEEEE
T ss_pred cCccccccCcchhhhhCCEEEEEE
Confidence 23334445579999999999997
No 25
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=74.55 E-value=12 Score=35.05 Aligned_cols=118 Identities=11% Similarity=0.162 Sum_probs=61.3
Q ss_pred ccCcEEEEEecCChHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHHHH
Q 022893 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (290)
Q Consensus 54 q~~~V~vlafe~spe~y~~~lk~~G~d~~~~~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~~ 133 (290)
++..|.++..|-+.+... .++.|++.+ ++.+.| |.. ..++..++...
T Consensus 90 ~g~~vlyid~E~s~~~~~--a~~~g~~~~----~l~i~~----~~~-----------------------~e~~~~~~~~l 136 (356)
T 1u94_A 90 EGKTCAFIDAEHALDPIY--ARKLGVDID----NLLCSQ----PDT-----------------------GEQALEICDAL 136 (356)
T ss_dssp TTCCEEEEESSCCCCHHH--HHHTTCCGG----GCEEEC----CSS-----------------------HHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCccHHH--HHHcCCChh----heeeeC----CCC-----------------------HHHHHHHHHHH
Confidence 456899999998776443 456677643 354443 221 11222222222
Q ss_pred HHhccCccCCCCCcEEEEEechhHHHHhCC-----------hH--HHHHHHHhhhcCCc-e-eEEEEeec--ccccc---
Q 022893 134 IEQGKGLIGQGKDRFSIAIDSVSEMVRHAS-----------IS--SVAGILSNLRSHDQ-V-SSIFWLLH--SDLHE--- 193 (290)
Q Consensus 134 ~e~~~~~~~~~k~~~~VaIDSLS~LL~h~s-----------~~--~v~~lL~~Lr~~~~-i-ssV~~LlH--sDLHe--- 193 (290)
.+. .+. -.|+|||++.+..+.. .+ .+.+.|+.|..... . ..|+.+-| .+...
T Consensus 137 ~~~-------~~~-~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg 208 (356)
T 1u94_A 137 ARS-------GAV-DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 208 (356)
T ss_dssp HHH-------TCC-SEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----------
T ss_pred Hhc-------cCC-CEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 221 223 5899999998863211 22 45677777754211 1 12333323 22211
Q ss_pred -h---hHHHHHHhhceeEEEEee
Q 022893 194 -I---KFTSVLEYLSSMVASVEP 212 (290)
Q Consensus 194 -~---~v~~ALe~LAs~vi~vep 212 (290)
+ .--.+++|.|++++.+.-
T Consensus 209 ~~~~~~gG~~l~~~advrl~l~r 231 (356)
T 1u94_A 209 NPETTTGGNALKFYASVRLDIRR 231 (356)
T ss_dssp ----CTTCSHHHHHCSEEEEEEE
T ss_pred CCcccCCCcceeeeccEEEEEEE
Confidence 1 112389999999998863
No 26
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=74.42 E-value=29 Score=32.06 Aligned_cols=117 Identities=14% Similarity=0.163 Sum_probs=63.8
Q ss_pred ccCcEEEEEecCChHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHHHH
Q 022893 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (290)
Q Consensus 54 q~~~V~vlafe~spe~y~~~lk~~G~d~~~~~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~~ 133 (290)
++..+.++..|.+.+... .++.|++.+ ++.+.+ |..+ .++..++...
T Consensus 88 ~g~~vlyi~~E~~~~~~~--a~~lG~~~~----~l~i~~----~~~~-----------------------e~~l~~~~~l 134 (349)
T 2zr9_A 88 AGGIAAFIDAEHALDPEY--AKKLGVDTD----SLLVSQ----PDTG-----------------------EQALEIADML 134 (349)
T ss_dssp TTCCEEEEESSCCCCHHH--HHHTTCCGG----GCEEEC----CSSH-----------------------HHHHHHHHHH
T ss_pred CCCeEEEEECCCCcCHHH--HHHcCCCHH----HeEEec----CCCH-----------------------HHHHHHHHHH
Confidence 366899999998776542 456677643 455443 2211 1221221222
Q ss_pred HHhccCccCCCCCcEEEEEechhHHHHhC-------C----hH--HHHHHHHhhhcC---CceeEEEEeecc--cc----
Q 022893 134 IEQGKGLIGQGKDRFSIAIDSVSEMVRHA-------S----IS--SVAGILSNLRSH---DQVSSIFWLLHS--DL---- 191 (290)
Q Consensus 134 ~e~~~~~~~~~k~~~~VaIDSLS~LL~h~-------s----~~--~v~~lL~~Lr~~---~~issV~~LlHs--DL---- 191 (290)
+. +.++ -.|+|||+..++.+. + .+ .+.+.|+.|... ..+ .|+.+-|. +.
T Consensus 135 ~~-------~~~~-~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~-tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 135 VR-------SGAL-DIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGT-TAIFINELREKIGVMF 205 (349)
T ss_dssp HT-------TTCC-SEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTC-EEEEEEECC-------
T ss_pred Hh-------cCCC-CEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCC-EEEEEeccccccCccc
Confidence 22 2234 589999999987311 1 22 456777777532 112 24444442 11
Q ss_pred ---cchhHHHHHHhhceeEEEEee
Q 022893 192 ---HEIKFTSVLEYLSSMVASVEP 212 (290)
Q Consensus 192 ---He~~v~~ALe~LAs~vi~vep 212 (290)
..+.--.+++|.|++++.+.-
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr 229 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR 229 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEE
Confidence 112224689999999998864
No 27
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=73.39 E-value=11 Score=33.06 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=54.0
Q ss_pred EEEEEechhHHHHh---CCh-H---HHHHHHHhhhcCCceeEEEEeeccc-ccc--------------hhHHHHHHhhce
Q 022893 148 FSIAIDSVSEMVRH---ASI-S---SVAGILSNLRSHDQVSSIFWLLHSD-LHE--------------IKFTSVLEYLSS 205 (290)
Q Consensus 148 ~~VaIDSLS~LL~h---~s~-~---~v~~lL~~Lr~~~~issV~~LlHsD-LHe--------------~~v~~ALe~LAs 205 (290)
-+|+||.+..++.. ... . .+.+.|++|.+... ..|+.+-|-- ..+ .+-.+.++++|+
T Consensus 149 ~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~-~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD 227 (296)
T 1cr0_A 149 DVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTG-VVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSD 227 (296)
T ss_dssp SEEEEEEEC-----------CHHHHHHHHHHHHHHHHHC-CEEEEEEECC-----------------CCC---CHHHHCS
T ss_pred CEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhC-CeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCc
Confidence 58999999998743 122 3 34555555533112 2455565652 221 122348899999
Q ss_pred eEEEEeecCcccccccchhhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceEEEeccCcchh
Q 022893 206 MVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKFTPVLSEDEI 275 (290)
Q Consensus 206 ~vi~vep~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~I~~~~~~f~~~~~~~~~ 275 (290)
.++.+..+... .+.+...+.|...|-+|..- ..-+|.++....+|.+++..+.+
T Consensus 228 ~vi~L~~~~~~---------------~~~~~~~l~i~K~R~~g~~g-~~~~~~f~~~~~~f~~~~~~~~~ 281 (296)
T 1cr0_A 228 TIIALERNQQG---------------DMPNLVLVRILKCRFTGDTG-IAGYMEYNKETGWLEPSSYSGEE 281 (296)
T ss_dssp EEEEEEEC----------------------CEEEEEEEETTTCCCE-EEEEEEECTTTCCEEECCC----
T ss_pred EEEEEecCccc---------------CCCCeEEEEEEccccCCCCC-ceEEEEEEcCccEEecCCCCccc
Confidence 99999855321 00022344444333378543 22367778888888888766554
No 28
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=69.29 E-value=8.2 Score=43.73 Aligned_cols=117 Identities=11% Similarity=0.190 Sum_probs=67.5
Q ss_pred ccCcEEEEEecCChHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHHHH
Q 022893 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (290)
Q Consensus 54 q~~~V~vlafe~spe~y~~~lk~~G~d~~~~~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~~ 133 (290)
+++.+.++.+|-+++... .++.|+|.+ ++.+.+ |..+ .++...+...
T Consensus 410 ~G~~vlyis~E~s~~~~~--a~~lGvd~~----~L~i~~----~~~~-----------------------e~~l~~l~~l 456 (1706)
T 3cmw_A 410 EGKTCAFIDAEHALDPIY--ARKLGVDID----NLLCSQ----PDTG-----------------------EQALEICDAL 456 (1706)
T ss_dssp TTCCEEEECTTSCCCHHH--HHHTTCCGG----GCEEEC----CSSH-----------------------HHHHHHHHHH
T ss_pred hCCCeEEEEccCchHHHH--HHHcCCCHH----HeEEcC----CCCH-----------------------HHHHHHHHHH
Confidence 467999999999998764 677788744 465533 2211 1222222222
Q ss_pred HHhccCccCCCCCcEEEEEechhHHHHhC-------------ChHHHHHHHHhhhcC---CceeEEEEe--ecccc----
Q 022893 134 IEQGKGLIGQGKDRFSIAIDSVSEMVRHA-------------SISSVAGILSNLRSH---DQVSSIFWL--LHSDL---- 191 (290)
Q Consensus 134 ~e~~~~~~~~~k~~~~VaIDSLS~LL~h~-------------s~~~v~~lL~~Lr~~---~~issV~~L--lHsDL---- 191 (290)
++. .++ -.|+||||+.|..+. ....+.+.|+.|+.. ..+ .|+.+ ++.+.
T Consensus 457 v~~-------~~~-~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v-~VI~inQl~~~vg~~f 527 (1706)
T 3cmw_A 457 ARS-------GAV-DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNT-LLIFINQIRMKIGVMF 527 (1706)
T ss_dssp HHH-------TCC-SEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTC-EEEEEECEEECTTCCS
T ss_pred HHh-------cCC-CEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCC-EEEEEeeccccccccc
Confidence 221 233 589999999987321 112456777777532 112 23333 33332
Q ss_pred ---cchhHHHHHHhhceeEEEEee
Q 022893 192 ---HEIKFTSVLEYLSSMVASVEP 212 (290)
Q Consensus 192 ---He~~v~~ALe~LAs~vi~vep 212 (290)
+.|.--++++|.|++++.|.-
T Consensus 528 g~~~~p~gg~ale~~ADv~L~L~R 551 (1706)
T 3cmw_A 528 GNPETTTGGNALKFYASVRLDIRR 551 (1706)
T ss_dssp SCCEEESSCSHHHHHEEEEEEEEE
T ss_pred CCCccCCCCcceeeeCCEEEEEEe
Confidence 112224799999999999863
No 29
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=65.51 E-value=35 Score=32.97 Aligned_cols=132 Identities=18% Similarity=0.195 Sum_probs=71.4
Q ss_pred cCcEEEEEecCChHHHHHHHHhcCCCcCCCC--CeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHHH
Q 022893 55 SRGLVVVAYSRSPSFYVDLLKRRGIDIASSH--DWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (290)
Q Consensus 55 ~~~V~vlafe~spe~y~~~lk~~G~d~~~~~--~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (290)
+++.+++.++.++..+.+..++.|+...... .++.+++.+.++..| .+...+ .|..++.+
T Consensus 68 ~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~-----------------~~l~~~-~l~~~~~~ 129 (525)
T 1tf7_A 68 DEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ-----------------EVVGGF-DLSALIER 129 (525)
T ss_dssp CCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC-----------------SCCSSH-HHHHHHHH
T ss_pred CCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh-----------------hhhccc-CHHHHHHH
Confidence 4567778887788777777777787643211 236666554321111 011111 23333333
Q ss_pred HHHhccCccCCCCCcEEEEEechhHHHHhC-----ChHHHHHHHHhhhcCCceeEEEEeecccccc--hhHHHH-HHhhc
Q 022893 133 IIEQGKGLIGQGKDRFSIAIDSVSEMVRHA-----SISSVAGILSNLRSHDQVSSIFWLLHSDLHE--IKFTSV-LEYLS 204 (290)
Q Consensus 133 ~~e~~~~~~~~~k~~~~VaIDSLS~LL~h~-----s~~~v~~lL~~Lr~~~~issV~~LlHsDLHe--~~v~~A-Le~LA 204 (290)
+... +++ +.+ -.|+||+.+.++... .-..+..+++.|+.. .+ .|+..-|- +.+ +..... +++++
T Consensus 130 ~~~~---LS~-g~~-~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~-g~-tvl~itH~-~~~~~~~~~~~i~~~la 201 (525)
T 1tf7_A 130 INYA---IQK-YRA-RRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQI-GA-TTVMTTER-IEEYGPIARYGVEEFVS 201 (525)
T ss_dssp HHHH---HHH-HTC-SEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHH-TC-EEEEEEEC-SSSSSCSSTTSCHHHHC
T ss_pred HHHH---HHH-cCC-CEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHC-CC-EEEEEecC-CCCccccccccceeeee
Confidence 3331 111 122 489999998876442 234677888888752 33 35555554 332 111112 57899
Q ss_pred eeEEEEee
Q 022893 205 SMVASVEP 212 (290)
Q Consensus 205 s~vi~vep 212 (290)
+.++.+.-
T Consensus 202 D~vi~L~~ 209 (525)
T 1tf7_A 202 DNVVILRN 209 (525)
T ss_dssp SEEEEEEE
T ss_pred eEEEEEEE
Confidence 99999974
No 30
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=62.82 E-value=37 Score=27.68 Aligned_cols=92 Identities=11% Similarity=0.050 Sum_probs=47.0
Q ss_pred EEEEEechhHHHHhCC------------hHHHHHHHHhhhcCCceeEEEEeecccccchhHHHHHHhhceeEEEEeecCc
Q 022893 148 FSIAIDSVSEMVRHAS------------ISSVAGILSNLRSHDQVSSIFWLLHSDLHEIKFTSVLEYLSSMVASVEPFNQ 215 (290)
Q Consensus 148 ~~VaIDSLS~LL~h~s------------~~~v~~lL~~Lr~~~~issV~~LlHsDLHe~~v~~ALe~LAs~vi~vep~~~ 215 (290)
-.|++|+++.++...- ...+...|.++.+...+ .|+..-|. ..+ --..++++++.++.++.+..
T Consensus 127 ~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~-tvi~vtH~-~~~--~g~~~~~~~d~~l~l~~~~~ 202 (231)
T 4a74_A 127 KLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDI-AVFVTNQV-QAN--GGHILAHSATLRVYLRKGKG 202 (231)
T ss_dssp EEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEC-C-----------CCSEEEEEEECTT
T ss_pred eEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCC-eEEEEeec-ccC--cchhhHhhceEEEEEEecCC
Confidence 6899999999876521 12455555555432222 35555552 222 23568899999999985322
Q ss_pred ccccccchhhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceE
Q 022893 216 AAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIK 265 (290)
Q Consensus 216 ~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~I~~~~~~ 265 (290)
....+.+ .|-|.|..-. . .|.|..+++.
T Consensus 203 -------------------~~r~l~~-~K~r~~~~~~-~-~f~i~~~Gl~ 230 (231)
T 4a74_A 203 -------------------GKRIARL-IDAPHLPEGE-A-VFSITEKGIE 230 (231)
T ss_dssp -------------------SCEEEEE-ESCC--CCSC-E-EEEEETTEEE
T ss_pred -------------------CeEEEEE-EeCCCCCCce-E-EEEEeccccc
Confidence 2223333 2334443333 3 8999988764
No 31
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=61.17 E-value=49 Score=38.27 Aligned_cols=117 Identities=11% Similarity=0.188 Sum_probs=67.6
Q ss_pred ccCcEEEEEecCChHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccchhhhHHHHHH
Q 022893 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (290)
Q Consensus 54 q~~~V~vlafe~spe~y~~~lk~~G~d~~~~~~rv~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~~ 133 (290)
++..+.++.+|-+.+... .++.|+|.+ ++.|.| |..+ .++...+...
T Consensus 410 ~G~~vlyis~E~s~~~~~--a~~lGvd~~----~L~I~~----~~~~-----------------------e~il~~~~~l 456 (2050)
T 3cmu_A 410 EGKTCAFIDAEHALDPIY--ARKLGVDID----NLLCSQ----PDTG-----------------------EQALEICDAL 456 (2050)
T ss_dssp TTCCEEEECTTSCCCHHH--HHHTTCCTT----TCEEEC----CSSH-----------------------HHHHHHHHHH
T ss_pred cCCeEEEEEcCCCHHHHH--HHHcCCCHH----HeEEeC----CCCH-----------------------HHHHHHHHHH
Confidence 456899999999988765 677788744 465544 3211 1222221222
Q ss_pred HHhccCccCCCCCcEEEEEechhHHHHhC------C-------hHHHHHHHHhhhcC---CceeEEEEe--ecccc----
Q 022893 134 IEQGKGLIGQGKDRFSIAIDSVSEMVRHA------S-------ISSVAGILSNLRSH---DQVSSIFWL--LHSDL---- 191 (290)
Q Consensus 134 ~e~~~~~~~~~k~~~~VaIDSLS~LL~h~------s-------~~~v~~lL~~Lr~~---~~issV~~L--lHsDL---- 191 (290)
+.. .++ -+|+||||..|..+. + ...+.+.|+.|+.. -.+. ||.+ ++.+.
T Consensus 457 v~~-------~~~-~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~-VIlinQl~~~vg~~~ 527 (2050)
T 3cmu_A 457 ARS-------GAV-DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL-LIFINQIRMKIGVMF 527 (2050)
T ss_dssp HHH-------TCC-SEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCE-EEEEECCEECTTCCS
T ss_pred HHh-------cCC-cEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCe-EEEEeeccccccccc
Confidence 221 233 589999999887311 1 12466778888531 2222 3333 33332
Q ss_pred ---cchhHHHHHHhhceeEEEEee
Q 022893 192 ---HEIKFTSVLEYLSSMVASVEP 212 (290)
Q Consensus 192 ---He~~v~~ALe~LAs~vi~vep 212 (290)
+.|.=-.+++|.|++++.+.-
T Consensus 528 g~p~~psGg~ale~~ADv~l~L~R 551 (2050)
T 3cmu_A 528 GNPETTTGGNALKFYASVRLDIRR 551 (2050)
T ss_dssp SCCEECSSHHHHHHHEEEEEEEEE
T ss_pred CCCcCCCCcchhhhhCCEEEEEEe
Confidence 122224589999999999873
No 32
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=37.29 E-value=1.4e+02 Score=27.77 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=35.9
Q ss_pred EEEEEechhHHHHh--CC-----------hHHHHHHHHhhhcC---CceeEEEEeecc---------cccchhHHHHHHh
Q 022893 148 FSIAIDSVSEMVRH--AS-----------ISSVAGILSNLRSH---DQVSSIFWLLHS---------DLHEIKFTSVLEY 202 (290)
Q Consensus 148 ~~VaIDSLS~LL~h--~s-----------~~~v~~lL~~Lr~~---~~issV~~LlHs---------DLHe~~v~~ALe~ 202 (290)
-.|+|||+..+..+ .+ ...+.+.|+.|+.. ..+. ||..=|- |-..+-=-.+++|
T Consensus 141 dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~t-VI~inqv~~k~g~~fg~p~~~~GG~~l~h 219 (356)
T 3hr8_A 141 DLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAV-VIFTNQIRMKIGVMFGSPETTTGGLALKF 219 (356)
T ss_dssp SEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCE-EEEEEESSSCSSSSSCSCSSCTHHHHHHH
T ss_pred CeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCE-EEEEeeeeeccccccCCcccCCCcchhhh
Confidence 48899999877631 10 23345555555442 2222 3222222 1111233578999
Q ss_pred hceeEEEEee
Q 022893 203 LSSMVASVEP 212 (290)
Q Consensus 203 LAs~vi~vep 212 (290)
.+++++.++-
T Consensus 220 ~~~~rl~l~k 229 (356)
T 3hr8_A 220 YATMRMEVRR 229 (356)
T ss_dssp HCSEEEEEEE
T ss_pred hCcEEEEEEe
Confidence 9999999984
No 33
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=31.07 E-value=2.5e+02 Score=24.01 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=18.5
Q ss_pred CcEEEEEecCChHHHHHHHHhcCCC
Q 022893 56 RGLVVVAYSRSPSFYVDLLKRRGID 80 (290)
Q Consensus 56 ~~V~vlafe~spe~y~~~lk~~G~d 80 (290)
+.+.++.+|-+++.+..-++..|.+
T Consensus 69 ~~v~~~~~e~~~~~~~~r~~~~g~~ 93 (279)
T 1nlf_A 69 GPVIYLPAEDPPTAIHHRLHALGAH 93 (279)
T ss_dssp CCEEEEESSSCHHHHHHHHHHHHTT
T ss_pred ccEEEEECCCCHHHHHHHHHHHHhh
Confidence 5788999999998776656555543
Done!