BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022894
(290 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JJW6|REFP2_MOUSE RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2
PE=1 SV=1
Length = 218
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 101/181 (55%), Gaps = 28/181 (15%)
Query: 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARRGPLSNAR 60
MA +DMSLDDIIK R Q R RG G R GGR R
Sbjct: 1 MADKMDMSLDDIIK------LNRNQRRVNRGGGPRRNRPAIARGGR------------NR 42
Query: 61 PSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIREL 118
P+ Y+ R + P WQHDLF+ G G+E G KL VSNL GV++ DI+EL
Sbjct: 43 PAPYS------RPKPLPDKWQHDLFDSG--CGGGEGVETGAKLLVSNLDFGVSDADIQEL 94
Query: 119 FSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178
F+E G LK+ A+ +D++GR G+A+V + RR+DA A+K+Y V LDG+PM I++V +
Sbjct: 95 FAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 154
Query: 179 E 179
+
Sbjct: 155 D 155
>sp|B5FXN8|THOC4_TAEGU THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1
Length = 254
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 112/191 (58%), Gaps = 20/191 (10%)
Query: 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARRGPLSN-- 58
MA +DMSLDDIIK + GR RGRG G GG G A GP+ N
Sbjct: 1 MADKMDMSLDDIIKLNRSQRGASRGGRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNRP 60
Query: 59 --------ARPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHP 108
RP+ Y+ R + P WQHDLF DS AG +G+E G KL VSNL
Sbjct: 61 VMARGGGRNRPAPYS------RPKQLPEKWQHDLF-DSGFGAG-AGVETGGKLLVSNLDF 112
Query: 109 GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP 168
GV++ DI+ELF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LDG+P
Sbjct: 113 GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 172
Query: 169 MKIEVVGTNAE 179
M I++V + +
Sbjct: 173 MNIQLVTSQID 183
>sp|Q28FB9|THOC4_XENTR THO complex subunit 4 OS=Xenopus tropicalis GN=alyref PE=2 SV=1
Length = 260
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 86/131 (65%), Gaps = 13/131 (9%)
Query: 60 RPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRE 117
RP+ Y+ R + P WQHDLF+ +G+E G KL VSNL GV++ DI+E
Sbjct: 76 RPAPYS------RPKQLPDKWQHDLFDSGFGTG--AGMETGGKLLVSNLDFGVSDADIQE 127
Query: 118 LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177
LF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LDG+PM I++V +
Sbjct: 128 LFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQ 187
Query: 178 AEI---PLQAR 185
E P+Q++
Sbjct: 188 IEAQRRPIQSQ 198
>sp|Q58EA2|THO4A_XENLA THO complex subunit 4-A OS=Xenopus laevis GN=alyref-a PE=2 SV=1
Length = 256
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 110/203 (54%), Gaps = 26/203 (12%)
Query: 1 MATHVDMSLDDIIK----SRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARRGPL 56
M +DMSLDDIIK R G AR G RG G GP+
Sbjct: 1 MGDKMDMSLDDIIKLNRSQRPSGRGRGGGRGARGGSARGGAGGRIGGGRGGGAPGVGGPM 60
Query: 57 SN---------ARPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSN 105
+ RP+ Y+ R + P WQHDLF+ A +G+E G KL VSN
Sbjct: 61 RSRPVLSRGGRNRPTPYS------RPKQLPDKWQHDLFDSGFGAG--AGMETGGKLLVSN 112
Query: 106 LHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165
L GV++ DI+ELF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LD
Sbjct: 113 LDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD 172
Query: 166 GKPMKIEVVGTNAEI---PLQAR 185
G+PM I++V + E P+Q++
Sbjct: 173 GRPMNIQLVTSQIEAQRRPIQSQ 195
>sp|Q6GLW1|THO4B_XENLA THO complex subunit 4-B OS=Xenopus laevis GN=alyref-b PE=2 SV=1
Length = 256
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 87/131 (66%), Gaps = 13/131 (9%)
Query: 60 RPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRE 117
RP+ Y+ R + P WQHDLF DS G +G+E G KL VSNL GV++ DI+E
Sbjct: 72 RPTPYS------RPKQLPDKWQHDLF-DSGFGTG-AGMETGGKLLVSNLDFGVSDADIQE 123
Query: 118 LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177
LF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN V LDG+ M I++V +
Sbjct: 124 LFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQ 183
Query: 178 AEI---PLQAR 185
E P+Q++
Sbjct: 184 IEAQRRPIQSQ 194
>sp|O08583|THOC4_MOUSE THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3
Length = 255
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 107/198 (54%), Gaps = 32/198 (16%)
Query: 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARR----GPL 56
MA +DMSLDDIIK + RG GR R G G G+V AAR GP+
Sbjct: 1 MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQA-----AARVNRGGGPM 55
Query: 57 SN-------------ARPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKL 101
N RP+ Y+ R + P WQHDLF+ G KL
Sbjct: 56 RNRPAIARGAAGGGRNRPAPYS------RPKQLPDKWQHDLFDSGFGGGAGVE--TGGKL 107
Query: 102 YVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN 161
VSNL GV++ DI+ELF+E G LK+ A+H+D++GR G+A+V + R++DA A+K+YN
Sbjct: 108 LVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNG 167
Query: 162 VLLDGKPMKIEVVGTNAE 179
V LDG+PM I++V + +
Sbjct: 168 VPLDGRPMNIQLVTSQID 185
>sp|Q86V81|THOC4_HUMAN THO complex subunit 4 OS=Homo sapiens GN=ALYREF PE=1 SV=3
Length = 257
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 4/112 (3%)
Query: 70 FRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR 127
+ R + P WQHDLF+ G KL VSNL GV++ DI+ELF+E G LK+
Sbjct: 77 YSRPKQLPDKWQHDLFDSGFGGGAGVE--TGGKLLVSNLDFGVSDADIQELFAEFGTLKK 134
Query: 128 YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 179
A+H+D++GR G+A+V + R++DA A+K+YN V LDG+PM I++V + +
Sbjct: 135 AAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQID 186
>sp|Q3T0I4|THOC4_BOVIN THO complex subunit 4 OS=Bos taurus GN=ALYREF PE=2 SV=1
Length = 257
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 4/112 (3%)
Query: 70 FRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR 127
+ R + P WQHDLF+ G KL VSNL GV++ DI+ELF+E G LK+
Sbjct: 77 YSRPKQLPDKWQHDLFDSGFGGGAGVE--TGGKLLVSNLDFGVSDADIQELFAEFGTLKK 134
Query: 128 YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 179
A+H+D++GR G+A+V + R++DA A+K+YN V LDG+PM I++V + +
Sbjct: 135 AAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQID 186
>sp|Q9BY77|PDIP3_HUMAN Polymerase delta-interacting protein 3 OS=Homo sapiens GN=POLDIP3
PE=1 SV=2
Length = 421
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 9/83 (10%)
Query: 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY-AIHFDKNGRPSGSAEVVYARRS 150
+S +E GTK+ V+NLHP VT +DI ELF G LKR +H G AEVV+ ++
Sbjct: 274 LSPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH-------PGVAEVVFVKKD 325
Query: 151 DAFAALKRYNNVLLDGKPMKIEV 173
DA A K+YNN LDG+PMK +
Sbjct: 326 DAITAYKKYNNRCLDGQPMKCNL 348
>sp|Q8BG81|PDIP3_MOUSE Polymerase delta-interacting protein 3 OS=Mus musculus GN=Poldip3
PE=2 SV=1
Length = 420
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 9/83 (10%)
Query: 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY-AIHFDKNGRPSGSAEVVYARRS 150
+S +E GTK+ V+NLHP VT +DI ELF G LKR +H G AEVV+ ++
Sbjct: 274 LSPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH-------PGVAEVVFVKKD 325
Query: 151 DAFAALKRYNNVLLDGKPMKIEV 173
DA A K+YNN LDG+PMK +
Sbjct: 326 DAITAYKKYNNRCLDGQPMKCNL 348
>sp|Q09330|MLO3_SCHPO mRNA export protein mlo3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mlo3 PE=1 SV=1
Length = 199
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 46/176 (26%)
Query: 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARRGPLSNAR 60
M+ +D SLD II S+ K G R+ R R P P NA+
Sbjct: 1 MSMELDQSLDAIIASKPK-------GGIRKRRARSNKPK---------------PTKNAK 38
Query: 61 PSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFS 120
P+ T + A S I +K+ VSNL VT ++ELF
Sbjct: 39 PAVNTAS----------------------ALKSVISEESKIIVSNLPTDVTEAQVKELFV 76
Query: 121 E-IGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG-KPMKIEVV 174
+ IG KR ++ + NGR G A ++++R DA A ++Y L+DG + MK+E++
Sbjct: 77 KSIGPCKRVSLAYGPNGRSKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEII 132
>sp|Q9XFD1|NCBP2_ARATH Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana
GN=CBP20 PE=1 SV=1
Length = 257
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 72 RTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIH 131
R R F + F+++LRA+ T +Y+ N+ T + + ELFS GE+K+ +
Sbjct: 15 RDRRFSGTQEEFDEALRAS--------TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMG 66
Query: 132 FDKNGR-PSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173
DKN + P G V++ R D A+K + +LD +P++++
Sbjct: 67 LDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDF 109
>sp|Q84L14|NCBP2_ORYSJ Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp.
japonica GN=CBP20 PE=2 SV=1
Length = 243
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSD 151
+ ++ +YV N+ T + ELFS GE+++ + DKN + P G ++Y R D
Sbjct: 28 AALQASVTVYVGNMSFYTTEEQAYELFSRAGEIRKIIMGLDKNSKTPCGFCFILYYSRED 87
Query: 152 AFAALKRYNNVLLDGKPMKIEV 173
A A+K + +LD +P++++
Sbjct: 88 AEDAVKYISGTMLDDRPIRVDF 109
>sp|Q12159|YRA1_YEAST RNA annealing protein YRA1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YRA1 PE=1 SV=2
Length = 226
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 117/291 (40%), Gaps = 75/291 (25%)
Query: 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPS---GSVSGGRMTGAARRGPL- 56
M+ ++D SLD+II S K G RAR G RG GP V R + RRGP+
Sbjct: 1 MSANLDKSLDEIIGSNKA-----GSNRARVGGTRGNGPRRVGKQVGSQRRSLPNRRGPIR 55
Query: 57 SNARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIR 116
N R +A R A + K+ V L + D +R
Sbjct: 56 KNTRAPPNAVA--------------------RVAKLLDTTREVKVNVEGLPRDIKQDAVR 95
Query: 117 ELF-SEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG--KPMKIEV 173
E F S++G ++R + +++ G+ +G A + + A A++R+N +DG +++ +
Sbjct: 96 EFFASQVGGVQRVLLSYNERGQSTGMANITFKNGELARRAVERFNGSPIDGGRSRLRLNL 155
Query: 174 VGTNAEIPLQARVNVTGVNGRRKRTVVMTSGSGNAGGAAAINRGPGQGRRGGLRRSSQGR 233
+ + P+++ + R M GNA P +RG R+++ +
Sbjct: 156 IVDPNQRPVKSLAD---------RIKAMPQKGGNA---------PRPVKRGPNRKAAMAK 197
Query: 234 GRGQGQGRGRGRGGGGGGGRGRGRGRGRGQGKKNPVDKSADDLDKELDNYH 284
+ + + ++ P KS +DLDKE+ +Y
Sbjct: 198 SQNKPK-------------------------REKPAKKSLEDLDKEMADYF 223
>sp|B5G279|NCBP2_TAEGU Nuclear cap-binding protein subunit 2 OS=Taeniopygia guttata
GN=NCBP2 PE=2 SV=1
Length = 168
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR-PSGSAEVVYARRSDAF 153
+++ + LYV NL T + I+ELFS+ G++KR + DK + P G V Y R+DA
Sbjct: 39 LKISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAE 98
Query: 154 AALKRYNNVLLDGKPMKIE 172
A++ N LD + ++ +
Sbjct: 99 HAMRFINGTRLDDRIIRTD 117
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158
+ LYV NL P ++++ ++E+FS G + + D NG GS V +A +A A+ +
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQ 377
Query: 159 YNNVLLDGKPMKIEV 173
+ +++ KP+ + +
Sbjct: 378 LSGKMIESKPLYVAI 392
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158
T +YV NL T+DD++ F E G++ + D G+ G V + DA A++
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 274
Query: 159 YNNVLLDGK 167
N D K
Sbjct: 275 LNGHKFDDK 283
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160
+++ NLHP + N + E FS GE+ + D+NG G V + SDA A++ N
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVN 199
Query: 161 NVLLDG 166
+L++G
Sbjct: 200 GMLMNG 205
Score = 38.9 bits (89), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158
T +YV N+ T+++ +LFS+ GE+ A+ D G+P G V + + A A++
Sbjct: 231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEE 290
Query: 159 YN 160
N
Sbjct: 291 LN 292
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158
+ +YV N++ VT +++R+ FS+ G + + D+ G+ G V ++ +A A+K
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 159 YNNVLLDGKPMKIEVVGTNAEIPLQARVNVTGVNGRRKRTVVMTSGSGNAGGAAAI---N 215
++ + GKP+ + + + +Q +V RK + +S S N G A + N
Sbjct: 364 FHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSS---SSASVNPGTYAPLYYTN 420
Query: 216 RGPG 219
PG
Sbjct: 421 THPG 424
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAA 155
V LYV +LHP VT + + F+E L + D +GR + R DA A
Sbjct: 22 VTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLA 81
Query: 156 LKRYNNVLLDGKPMKI 171
+++ NN LL+GK +++
Sbjct: 82 IEKKNNSLLNGKMIRV 97
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDA 152
E T LY+ NL V+ D +RE F+E G++ AI D+N G A V + DA
Sbjct: 198 EKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDA 254
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALK 157
T LYV+NL +T+D++ ++F + G + + I DK GRP G A V + +R +A A+
Sbjct: 188 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAIS 247
Query: 158 RYNNVLLDG--KPMKIEVVGTNAEIPLQARVNVTGV 191
NNV+ +G +P+ + + + ++ +N G+
Sbjct: 248 ALNNVIPEGASQPLTVRLAEEHGKMKAHHFMNQLGM 283
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAAL 156
GT L V+ L +T+ ++ LF G + I D K G G A V +A DA A+
Sbjct: 101 GTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAI 160
Query: 157 KRYNNVLLDGKPMKI 171
K N + + K +K+
Sbjct: 161 KTVNGITVRNKRLKV 175
>sp|Q9P2K5|MYEF2_HUMAN Myelin expression factor 2 OS=Homo sapiens GN=MYEF2 PE=1 SV=3
Length = 600
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 156
+G+ ++V+NL V ++E+FS G +KR I DK+G+ G V + + +A A+
Sbjct: 231 LGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAI 290
Query: 157 KRYNNVLLDGKPMKIEV 173
+N L +PM +++
Sbjct: 291 SMFNGQFLFDRPMHVKM 307
>sp|Q62826|HNRPM_RAT Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus
GN=Hnrnpm PE=1 SV=4
Length = 690
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 156
+G+ ++V+NL V ++E+FS G + R I DK+G+ G V + + +A A+
Sbjct: 162 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAI 221
Query: 157 KRYNNVLLDGKPMKIEV 173
+N LL +PM +++
Sbjct: 222 SMFNGQLLFDRPMHVKM 238
>sp|P52272|HNRPM_HUMAN Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM
PE=1 SV=3
Length = 730
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 156
+G+ ++V+NL V ++E+FS G + R I DK+G+ G V + + +A A+
Sbjct: 202 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAI 261
Query: 157 KRYNNVLLDGKPMKIEV 173
+N LL +PM +++
Sbjct: 262 SMFNGQLLFDRPMHVKM 278
>sp|O01671|SXL_MEGSC Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3
Length = 321
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAALK 157
T LYV+NL +T++ + +F + G++ + I DK+ G P G A + + +R +A A+
Sbjct: 164 TNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAIS 223
Query: 158 RYNNVLLDG--KPMKIEV 173
NNV+ +G +P+ + V
Sbjct: 224 ALNNVIPEGGTQPLTVRV 241
>sp|Q9D0E1|HNRPM_MOUSE Heterogeneous nuclear ribonucleoprotein M OS=Mus musculus GN=Hnrnpm
PE=1 SV=3
Length = 729
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 156
+G+ ++V+NL V ++E+FS G + R I DK+G+ G V + + +A A+
Sbjct: 201 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAI 260
Query: 157 KRYNNVLLDGKPMKIEV 173
+N LL +PM +++
Sbjct: 261 SMFNGQLLFDRPMHVKM 277
>sp|Q24491|RX21_DROME RNA-binding protein Rsf1 OS=Drosophila melanogaster GN=Rsf1 PE=1
SV=1
Length = 197
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALK 157
GT++YV NL V DD+ F++ G+L I F+ P G A V + R DA A
Sbjct: 6 GTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFN----PPGFAFVEFEHRDDAEKACD 61
Query: 158 RYNNVLLDGKPMKIEV 173
N L G +++E+
Sbjct: 62 ILNGSELLGSQLRVEI 77
>sp|O61374|SXL_CERCA Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2
Length = 348
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALK 157
T LYV+NL +T+D + +F + G + + I DK G+P G A V + +R +A A+
Sbjct: 196 TNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAIS 255
Query: 158 RYNNVLLDG--KPMKIEV 173
NNV+ +G +P+ + +
Sbjct: 256 ALNNVIPEGASQPLTVRL 273
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAAL 156
GT L V+ L +T+ ++ LF IG + I D K G G A V +A +D+ A+
Sbjct: 109 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAI 168
Query: 157 KRYNNVLLDGKPMKI 171
K N + + K +K+
Sbjct: 169 KSLNGITVRNKRLKV 183
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160
L +SNL T + + E+F + +K + + +G+P G A + +A DA AL N
Sbjct: 489 LVLSNLSYSATKETLEEVFEKATFIK---VPQNPHGKPKGYAFIEFASFEDAKEALNSCN 545
Query: 161 NVLLDGKPMKIEVVGTNA 178
+ ++G+ +++E+ G+N+
Sbjct: 546 KMEIEGRTIRLELQGSNS 563
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 66 IAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGEL 125
A++ T F + D F D + KL+V NL V + + +LF G +
Sbjct: 59 FARNVAITSEFEVEEDGFAD-VAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNV 117
Query: 126 KRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171
+ + +DK GR G V + S+ AA +++N LDG+P+++
Sbjct: 118 EMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAALKR 158
++YV NL GV + + LFSE G++ + +D++ GR G V Y + A+K
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 159 YNNVLLDGKPMKI 171
+ LDG+ +++
Sbjct: 265 LDGADLDGRQIRV 277
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160
L V+NL + + ++ELF + +K + + GRP G A V + DA AL N
Sbjct: 463 LIVNNLSYAASEETLQELFKKATSIK---MPQNNQGRPKGYAFVEFPTAEDAKEALNSCN 519
Query: 161 NVLLDGKPMKIEV 173
N ++G+ +++E
Sbjct: 520 NTEIEGRAIRLEF 532
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1
SV=1
Length = 281
Score = 37.7 bits (86), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAALK 157
T L V L T D+RE+FS G L + +D + GR G A V + R D+ A++
Sbjct: 117 TCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAME 176
Query: 158 RYNNVLLDGKPMKIEVVGT 176
R N + LDG+ ++++ T
Sbjct: 177 RANGMELDGRRIRVDYSIT 195
>sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1
SV=1
Length = 282
Score = 37.7 bits (86), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-KNGRPSGSAEVVYARRSDAFAALK 157
T L V L T D+RE+FS G L + +D + GR G A V + R D+ A++
Sbjct: 119 TCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAME 178
Query: 158 RYNNVLLDGKPMKIEVVGT 176
R N + LDG+ ++++ T
Sbjct: 179 RANGMELDGRRIRVDYSIT 197
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRY 159
+YV N+ G T D+ FS G + R I DK +G P G A + +A R+ AA+
Sbjct: 95 VYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVA-M 153
Query: 160 NNVLLDGKPMKIEVVGTNAEIPLQARVNVTGVNG 193
+ + G+ +K+ L R N+ G++
Sbjct: 154 DETVFRGRTIKV----------LPKRTNMPGISS 177
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAALKRY 159
L V+NL T D +RE+F K +I +N GR G A + ++ DA A+
Sbjct: 417 LVVNNLSYSATEDSLREVFE-----KATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSC 471
Query: 160 NNVLLDGKPMKIEV 173
NN ++G+ +++E
Sbjct: 472 NNTEIEGRSIRLEF 485
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160
L +SNL T + ++E+F + +K + ++NG+ G A + +A DA AL N
Sbjct: 489 LVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNSCN 545
Query: 161 NVLLDGKPMKIEVVG 175
++G+ +++E+ G
Sbjct: 546 KREIEGRAIRLELQG 560
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160
L NL VT D+++E+F + E++ + K+G+ G A + + +DA +
Sbjct: 396 LLAKNLPYKVTQDELKEVFEDAAEIRLVS----KDGKSKGIAYIEFKTEADAEKTFEEKQ 451
Query: 161 NVLLDGKPMKIEVVG 175
+DG+ + + G
Sbjct: 452 GTEIDGRSISLYYTG 466
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160
L +SNL T + ++E+F + +K + ++NG+ G A + +A DA AL N
Sbjct: 490 LVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNSCN 546
Query: 161 NVLLDGKPMKIEVVG 175
++G+ +++E+ G
Sbjct: 547 KREIEGRAIRLELQG 561
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160
L NL VT D+++E+F + E++ + K+G+ G A + + +DA +
Sbjct: 397 LLAKNLPYKVTQDELKEVFEDAAEIRLVS----KDGKSKGIAYIEFKTEADAEKTFEEKQ 452
Query: 161 NVLLDGKPMKIEVVG 175
+DG+ + + G
Sbjct: 453 GTEIDGRSISLYYTG 467
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160
L +SNL T + ++E+F + +K + ++NG+ G A + +A DA AL N
Sbjct: 488 LVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNSCN 544
Query: 161 NVLLDGKPMKIEVVG 175
++G+ +++E+ G
Sbjct: 545 KREIEGRAIRLELQG 559
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160
L NL VT D+++E+F + E++ + K+G+ G A + + +DA +
Sbjct: 395 LLAKNLPYKVTQDELKEVFEDAAEIRLVS----KDGKSKGIAYIEFKTEADAEKTFEEKQ 450
Query: 161 NVLLDGKPMKIEVVG 175
+DG+ + + G
Sbjct: 451 GTEIDGRSISLYYTG 465
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160
L +SNL T + ++E+F + +K + ++ G+ G A + +A DA AL N
Sbjct: 488 LVLSNLSYSATEETLQEVFEKATFIK---VPQNQQGKSKGYAFIEFASFEDAKEALNSCN 544
Query: 161 NVLLDGKPMKIEVVG 175
+ ++G+ +++E+ G
Sbjct: 545 KMEIEGRTIRLELQG 559
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 34.7 bits (78), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160
L +SNL T + ++E+F + +K + + +G+ G A + +A DA AL N
Sbjct: 491 LVLSNLSYSATEETLQEVFEKATFIK---VPQNPHGKSKGYAFIEFASFEDAKEALNSCN 547
Query: 161 NVLLDGKPMKIEVVG 175
+ ++G+ +++E+ G
Sbjct: 548 KMEIEGRTIRLELQG 562
>sp|Q92804|RBP56_HUMAN TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15
PE=1 SV=1
Length = 592
Score = 32.0 bits (71), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 14/83 (16%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKR--------YAIHFDKN-GRPSGSAEVVYARRSD 151
++V L GV+ D + E F +IG +K ++ DK+ G+P G A V +
Sbjct: 236 IFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPS 295
Query: 152 AFAALKRYNNVLLDGKPMKIEVV 174
A AA+ DGK ++
Sbjct: 296 AKAAID-----WFDGKEFHGNII 313
>sp|P17133|RU17_DROME U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila
melanogaster GN=snRNP-U1-70K PE=1 SV=2
Length = 448
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYA-IHFDKNGRPSGSAEVVYARRSDAFAALKRY 159
L+++ ++ + +R F G +K+ IH ++G+P G A + Y D AA K
Sbjct: 104 LFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHA 163
Query: 160 NNVLLDGKPMKIEV 173
+ +D K + ++V
Sbjct: 164 DGKKIDSKRVLVDV 177
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 31.2 bits (69), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 79 QHDLFEDSLRAAGI--SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N 135
+ D+F D +A + + KL+V NL V + + +LF G ++ + +DK
Sbjct: 77 EDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVT 136
Query: 136 GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171
GR G V + ++ AA +++N +G+P+++
Sbjct: 137 GRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,530,786
Number of Sequences: 539616
Number of extensions: 6552787
Number of successful extensions: 100872
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1451
Number of HSP's successfully gapped in prelim test: 878
Number of HSP's that attempted gapping in prelim test: 42931
Number of HSP's gapped (non-prelim): 24491
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)