Query 022894
Match_columns 290
No_of_seqs 424 out of 2376
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:55:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0533 RRM motif-containing p 100.0 4.6E-31 9.9E-36 230.3 21.1 159 1-179 1-164 (243)
2 PLN03134 glycine-rich RNA-bind 99.9 1.7E-20 3.8E-25 153.6 15.8 84 95-178 31-115 (144)
3 TIGR01659 sex-lethal sex-letha 99.8 7.4E-18 1.6E-22 156.5 15.7 82 97-178 192-276 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 6.3E-17 1.4E-21 150.7 12.7 82 97-178 268-350 (352)
5 TIGR01659 sex-lethal sex-letha 99.7 4.4E-17 9.5E-22 151.4 11.3 84 94-177 103-187 (346)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1E-16 2.2E-21 149.3 11.7 82 97-178 2-84 (352)
7 PF00076 RRM_1: RNA recognitio 99.7 1.4E-16 3.1E-21 113.2 9.6 70 101-170 1-70 (70)
8 KOG0121 Nuclear cap-binding pr 99.7 4.4E-17 9.6E-22 127.0 7.3 79 96-174 34-113 (153)
9 KOG0122 Translation initiation 99.7 2.2E-16 4.7E-21 135.5 9.7 81 97-177 188-269 (270)
10 KOG4207 Predicted splicing fac 99.6 3.1E-16 6.8E-21 131.5 7.1 87 92-178 7-94 (256)
11 KOG0107 Alternative splicing f 99.6 5.9E-16 1.3E-20 126.8 8.5 78 97-178 9-86 (195)
12 TIGR01648 hnRNP-R-Q heterogene 99.6 9.9E-15 2.1E-19 142.8 18.2 78 95-179 230-309 (578)
13 KOG0113 U1 small nuclear ribon 99.6 2E-15 4.4E-20 132.9 11.3 101 95-195 98-199 (335)
14 PF14259 RRM_6: RNA recognitio 99.6 5.6E-15 1.2E-19 105.6 9.4 70 101-170 1-70 (70)
15 KOG0130 RNA-binding protein RB 99.6 2.7E-15 5.8E-20 118.0 7.2 84 95-178 69-153 (170)
16 KOG0149 Predicted RNA-binding 99.6 2.6E-15 5.7E-20 128.4 7.5 81 95-176 9-90 (247)
17 PLN03120 nucleic acid binding 99.6 1.2E-14 2.6E-19 128.0 11.7 77 97-176 3-79 (260)
18 TIGR01645 half-pint poly-U bin 99.6 1.4E-14 3.1E-19 142.1 11.9 83 97-179 203-286 (612)
19 KOG0125 Ataxin 2-binding prote 99.6 9.9E-15 2.1E-19 130.0 9.1 83 95-178 93-175 (376)
20 KOG0105 Alternative splicing f 99.6 2E-14 4.4E-19 118.8 10.0 78 96-175 4-81 (241)
21 KOG0117 Heterogeneous nuclear 99.6 4.1E-15 9E-20 137.0 6.1 114 58-179 217-333 (506)
22 TIGR01645 half-pint poly-U bin 99.6 1.6E-14 3.4E-19 141.8 10.5 81 95-175 104-185 (612)
23 TIGR01628 PABP-1234 polyadenyl 99.5 2.2E-14 4.8E-19 141.9 11.3 80 99-178 1-81 (562)
24 TIGR01648 hnRNP-R-Q heterogene 99.5 2E-14 4.3E-19 140.7 10.6 80 95-174 55-135 (578)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.5 4.3E-14 9.3E-19 138.0 12.7 82 97-178 294-376 (509)
26 smart00362 RRM_2 RNA recogniti 99.5 4.9E-14 1.1E-18 99.2 9.5 72 100-172 1-72 (72)
27 TIGR01622 SF-CC1 splicing fact 99.5 3.7E-14 8E-19 136.7 11.7 81 97-177 185-266 (457)
28 TIGR01628 PABP-1234 polyadenyl 99.5 4.7E-14 1E-18 139.6 11.5 83 96-178 283-365 (562)
29 PLN03213 repressor of silencin 99.5 3.2E-14 7E-19 132.6 9.5 79 96-177 8-88 (759)
30 KOG0145 RNA-binding protein EL 99.5 4.4E-14 9.5E-19 122.4 9.1 86 94-179 37-123 (360)
31 PLN03121 nucleic acid binding 99.5 9.9E-14 2.1E-18 120.4 11.3 77 97-176 4-80 (243)
32 TIGR01622 SF-CC1 splicing fact 99.5 1.7E-13 3.7E-18 132.2 12.9 81 95-176 86-167 (457)
33 smart00360 RRM RNA recognition 99.5 1.5E-13 3.2E-18 96.3 8.8 70 103-172 1-71 (71)
34 KOG0114 Predicted RNA-binding 99.5 1.7E-13 3.6E-18 103.3 8.6 82 95-178 15-96 (124)
35 cd00590 RRM RRM (RNA recogniti 99.5 5.3E-13 1.2E-17 94.4 10.3 74 100-173 1-74 (74)
36 KOG0117 Heterogeneous nuclear 99.5 2E-13 4.3E-18 126.0 10.1 84 95-178 80-165 (506)
37 COG0724 RNA-binding proteins ( 99.5 2.6E-13 5.5E-18 119.4 10.4 79 98-176 115-194 (306)
38 KOG0126 Predicted RNA-binding 99.5 6.7E-15 1.5E-19 121.3 0.2 79 97-175 34-113 (219)
39 KOG0131 Splicing factor 3b, su 99.5 8.1E-14 1.8E-18 115.0 6.1 81 95-175 6-87 (203)
40 KOG0148 Apoptosis-promoting RN 99.5 2.8E-13 6.1E-18 118.1 9.6 80 95-179 161-240 (321)
41 KOG0146 RNA-binding protein ET 99.5 7.5E-14 1.6E-18 121.4 5.6 84 96-179 283-367 (371)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 4.7E-13 1E-17 130.1 11.9 80 95-178 272-352 (481)
43 KOG4212 RNA-binding protein hn 99.5 5.3E-13 1.1E-17 122.9 11.3 79 97-175 43-122 (608)
44 KOG0148 Apoptosis-promoting RN 99.4 3E-13 6.4E-18 117.9 7.8 81 98-178 62-143 (321)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 7.9E-13 1.7E-17 128.5 10.8 76 97-177 1-78 (481)
46 KOG0111 Cyclophilin-type pepti 99.4 1.3E-13 2.7E-18 117.0 3.8 83 96-178 8-91 (298)
47 KOG0415 Predicted peptidyl pro 99.4 3.8E-13 8.3E-18 121.0 7.1 86 94-179 235-321 (479)
48 KOG0108 mRNA cleavage and poly 99.4 7.2E-13 1.6E-17 125.4 8.9 81 99-179 19-100 (435)
49 KOG0127 Nucleolar protein fibr 99.4 1.1E-12 2.4E-17 123.7 9.8 84 96-179 290-380 (678)
50 KOG0144 RNA-binding protein CU 99.4 8.5E-13 1.8E-17 121.5 7.5 85 95-179 31-119 (510)
51 KOG0127 Nucleolar protein fibr 99.4 1.7E-12 3.7E-17 122.5 8.9 82 97-178 116-197 (678)
52 KOG0145 RNA-binding protein EL 99.4 4.9E-12 1.1E-16 109.8 10.6 83 95-177 275-358 (360)
53 KOG0144 RNA-binding protein CU 99.4 9.4E-13 2E-17 121.2 6.1 84 97-180 123-209 (510)
54 PF13893 RRM_5: RNA recognitio 99.3 7.7E-12 1.7E-16 85.6 8.4 56 115-174 1-56 (56)
55 smart00361 RRM_1 RNA recogniti 99.3 1.3E-11 2.8E-16 88.6 8.4 61 112-172 2-70 (70)
56 KOG0147 Transcriptional coacti 99.3 4E-12 8.7E-17 120.2 6.6 82 100-181 280-362 (549)
57 KOG0109 RNA-binding protein LA 99.3 5.2E-12 1.1E-16 111.2 6.5 73 99-178 3-75 (346)
58 KOG0124 Polypyrimidine tract-b 99.3 3E-12 6.5E-17 115.7 4.5 77 97-173 112-189 (544)
59 KOG0109 RNA-binding protein LA 99.3 6E-12 1.3E-16 110.8 5.5 77 95-178 75-151 (346)
60 KOG0132 RNA polymerase II C-te 99.3 5.6E-11 1.2E-15 116.3 12.6 75 97-176 420-494 (894)
61 KOG0116 RasGAP SH3 binding pro 99.3 5.7E-11 1.2E-15 112.0 12.1 81 97-178 287-368 (419)
62 KOG4206 Spliceosomal protein s 99.2 3.4E-11 7.3E-16 102.9 8.6 84 95-180 6-93 (221)
63 KOG0123 Polyadenylate-binding 99.2 5E-11 1.1E-15 111.7 8.9 77 101-179 79-155 (369)
64 KOG0131 Splicing factor 3b, su 99.2 4.8E-11 1.1E-15 98.7 6.4 85 94-178 92-178 (203)
65 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.1E-10 2.4E-15 114.1 9.3 72 97-174 174-257 (509)
66 KOG4208 Nucleolar RNA-binding 99.1 3.6E-10 7.8E-15 95.3 8.3 84 94-177 45-130 (214)
67 KOG4212 RNA-binding protein hn 99.1 2.2E-10 4.8E-15 105.9 7.2 77 94-174 532-608 (608)
68 KOG0110 RNA-binding protein (R 99.1 3.8E-10 8.3E-15 109.7 8.2 79 97-175 514-596 (725)
69 KOG4661 Hsp27-ERE-TATA-binding 99.0 4.6E-10 9.9E-15 106.7 7.8 82 97-178 404-486 (940)
70 KOG0153 Predicted RNA-binding 99.0 6.5E-10 1.4E-14 100.2 8.4 80 92-176 222-302 (377)
71 KOG4205 RNA-binding protein mu 99.0 2.3E-10 5.1E-15 104.2 5.2 83 97-180 5-88 (311)
72 KOG4454 RNA binding protein (R 99.0 1.2E-10 2.6E-15 99.0 2.7 93 93-186 4-96 (267)
73 KOG0124 Polypyrimidine tract-b 99.0 7.1E-10 1.5E-14 100.5 7.5 83 97-179 209-292 (544)
74 KOG0123 Polyadenylate-binding 99.0 9E-10 2E-14 103.3 8.3 77 99-180 2-78 (369)
75 KOG0110 RNA-binding protein (R 99.0 4.2E-10 9.2E-15 109.4 4.9 84 96-179 611-695 (725)
76 KOG0146 RNA-binding protein ET 99.0 8.1E-10 1.8E-14 96.5 5.6 83 97-179 18-103 (371)
77 KOG1548 Transcription elongati 98.9 4.3E-09 9.2E-14 95.0 9.3 82 95-176 131-220 (382)
78 KOG1457 RNA binding protein (c 98.9 9.6E-09 2.1E-13 87.7 9.8 83 97-179 33-120 (284)
79 KOG4205 RNA-binding protein mu 98.9 2.4E-09 5.3E-14 97.6 5.9 86 97-183 96-182 (311)
80 KOG4209 Splicing factor RNPS1, 98.9 4.5E-09 9.7E-14 92.4 6.9 81 96-177 99-180 (231)
81 KOG0106 Alternative splicing f 98.8 4.1E-09 8.8E-14 90.8 4.2 71 99-176 2-72 (216)
82 KOG1995 Conserved Zn-finger pr 98.7 1.1E-08 2.3E-13 93.0 5.2 86 95-180 63-157 (351)
83 PF04059 RRM_2: RNA recognitio 98.7 1.3E-07 2.7E-12 71.9 9.5 78 99-176 2-86 (97)
84 PF13865 FoP_duplication: C-te 98.7 6.5E-08 1.4E-12 70.0 6.9 20 268-287 37-56 (74)
85 KOG4660 Protein Mei2, essentia 98.6 3.2E-08 7E-13 94.3 4.6 72 95-170 72-143 (549)
86 KOG0151 Predicted splicing reg 98.6 1.4E-07 3E-12 92.1 7.5 84 95-178 171-258 (877)
87 KOG0226 RNA-binding proteins [ 98.5 1.2E-07 2.7E-12 82.4 5.2 82 96-177 188-270 (290)
88 KOG4211 Splicing factor hnRNP- 98.4 8.7E-07 1.9E-11 83.6 8.9 80 95-178 7-87 (510)
89 KOG1190 Polypyrimidine tract-b 98.4 9.4E-07 2E-11 81.6 8.4 77 98-178 297-374 (492)
90 PF11608 Limkain-b1: Limkain b 98.4 1.8E-06 3.8E-11 63.1 7.3 69 99-176 3-76 (90)
91 KOG4211 Splicing factor hnRNP- 98.3 1.2E-06 2.6E-11 82.7 7.2 79 96-175 101-180 (510)
92 KOG0120 Splicing factor U2AF, 98.3 5.2E-07 1.1E-11 86.6 4.7 83 96-178 287-370 (500)
93 KOG0105 Alternative splicing f 98.3 9.4E-06 2E-10 67.8 11.1 64 97-166 114-177 (241)
94 PF08777 RRM_3: RNA binding mo 98.3 1.7E-06 3.6E-11 67.0 6.0 73 98-175 1-78 (105)
95 KOG0106 Alternative splicing f 98.2 7.8E-07 1.7E-11 76.8 3.1 73 95-174 96-168 (216)
96 KOG4206 Spliceosomal protein s 98.2 6.1E-06 1.3E-10 70.9 8.1 78 94-175 142-220 (221)
97 KOG4849 mRNA cleavage factor I 98.2 4E-06 8.6E-11 76.1 6.5 76 99-174 81-159 (498)
98 KOG0147 Transcriptional coacti 98.2 6.5E-07 1.4E-11 85.4 1.6 78 97-175 178-256 (549)
99 KOG1457 RNA binding protein (c 98.2 2.5E-06 5.5E-11 73.1 4.9 68 94-164 206-273 (284)
100 KOG4307 RNA binding protein RB 98.1 3.3E-05 7.1E-10 75.8 11.9 76 98-173 867-943 (944)
101 KOG1456 Heterogeneous nuclear 97.9 6.8E-05 1.5E-09 68.9 10.0 86 93-182 282-368 (494)
102 KOG4210 Nuclear localization s 97.9 5.7E-06 1.2E-10 75.1 2.9 81 97-178 183-265 (285)
103 KOG1548 Transcription elongati 97.9 6.4E-05 1.4E-09 68.4 9.0 79 95-176 262-351 (382)
104 KOG1190 Polypyrimidine tract-b 97.9 3.4E-05 7.3E-10 71.5 6.9 79 96-177 412-491 (492)
105 KOG2314 Translation initiation 97.8 0.00012 2.6E-09 70.4 9.4 79 96-174 56-141 (698)
106 COG5175 MOT2 Transcriptional r 97.8 6.2E-05 1.3E-09 68.2 6.6 79 98-176 114-202 (480)
107 KOG1855 Predicted RNA-binding 97.7 2E-05 4.4E-10 73.3 3.0 77 97-173 230-320 (484)
108 PF08952 DUF1866: Domain of un 97.6 0.00026 5.6E-09 57.5 8.0 76 97-180 26-110 (146)
109 PF07078 FYTT: Forty-two-three 97.6 1.7E-05 3.6E-10 70.7 1.2 19 2-20 26-44 (316)
110 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00018 3.8E-09 48.6 5.4 52 99-156 2-53 (53)
111 KOG2202 U2 snRNP splicing fact 97.5 4.9E-05 1.1E-09 66.6 2.1 65 114-178 84-149 (260)
112 KOG1456 Heterogeneous nuclear 97.5 0.00083 1.8E-08 61.9 9.4 81 94-178 116-200 (494)
113 KOG0128 RNA-binding protein SA 97.4 5.1E-05 1.1E-09 76.0 1.6 81 98-178 736-816 (881)
114 KOG1365 RNA-binding protein Fu 97.4 0.00021 4.5E-09 65.9 5.3 78 97-174 279-359 (508)
115 KOG0129 Predicted RNA-binding 97.4 0.00043 9.3E-09 66.1 7.5 68 91-158 363-432 (520)
116 KOG2416 Acinus (induces apopto 97.3 0.00019 4.2E-09 69.4 4.1 79 94-177 440-522 (718)
117 KOG0120 Splicing factor U2AF, 97.3 0.00052 1.1E-08 66.3 6.9 63 115-177 426-492 (500)
118 KOG3152 TBP-binding protein, a 97.3 0.00024 5.3E-09 62.2 4.1 72 97-168 73-157 (278)
119 KOG4676 Splicing factor, argin 97.3 0.0004 8.6E-09 64.3 5.5 76 98-174 7-86 (479)
120 PF10309 DUF2414: Protein of u 97.1 0.0034 7.3E-08 43.6 7.2 55 98-159 5-62 (62)
121 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0037 8E-08 47.8 7.7 77 97-175 5-90 (100)
122 PF08675 RNA_bind: RNA binding 97.0 0.0033 7.1E-08 46.1 6.8 58 96-161 7-64 (87)
123 KOG0129 Predicted RNA-binding 97.0 0.0024 5.2E-08 61.2 7.5 63 96-159 257-326 (520)
124 KOG2193 IGF-II mRNA-binding pr 96.9 0.00085 1.9E-08 62.7 3.8 75 99-178 2-77 (584)
125 KOG4307 RNA binding protein RB 96.9 0.00072 1.6E-08 66.7 3.2 78 96-173 432-510 (944)
126 KOG1996 mRNA splicing factor [ 96.8 0.004 8.6E-08 55.8 7.1 63 113-175 301-365 (378)
127 KOG1365 RNA-binding protein Fu 96.7 0.0063 1.4E-07 56.4 7.8 73 98-171 161-237 (508)
128 KOG0128 RNA-binding protein SA 96.7 8.3E-05 1.8E-09 74.5 -4.7 69 97-165 666-735 (881)
129 KOG0115 RNA-binding protein p5 96.7 0.002 4.4E-08 56.6 4.0 76 99-174 32-111 (275)
130 KOG0112 Large RNA-binding prot 96.5 0.004 8.6E-08 63.2 5.3 82 94-180 451-534 (975)
131 PF03467 Smg4_UPF3: Smg-4/UPF3 96.2 0.0082 1.8E-07 50.8 4.9 79 97-175 6-96 (176)
132 KOG2068 MOT2 transcription fac 96.0 0.0023 5E-08 58.4 0.5 80 99-178 78-164 (327)
133 KOG2591 c-Mpl binding protein, 95.9 0.012 2.6E-07 56.9 5.0 72 96-173 173-248 (684)
134 PF13865 FoP_duplication: C-te 95.9 0.019 4.2E-07 41.4 5.0 17 271-287 55-71 (74)
135 PF15023 DUF4523: Protein of u 95.8 0.046 9.9E-07 44.2 7.2 72 96-174 84-159 (166)
136 PF03880 DbpA: DbpA RNA bindin 95.7 0.055 1.2E-06 38.9 7.0 66 100-174 2-74 (74)
137 PF04847 Calcipressin: Calcipr 95.7 0.04 8.6E-07 46.9 6.9 63 111-178 8-72 (184)
138 KOG2135 Proteins containing th 95.5 0.01 2.2E-07 56.5 2.9 74 99-178 373-447 (526)
139 KOG0112 Large RNA-binding prot 95.3 0.0073 1.6E-07 61.3 1.3 80 95-174 369-448 (975)
140 KOG4660 Protein Mei2, essentia 94.7 0.043 9.3E-07 53.2 4.7 83 96-178 386-474 (549)
141 PF11767 SET_assoc: Histone ly 94.6 0.18 3.9E-06 35.5 6.4 55 109-171 11-65 (66)
142 KOG2253 U1 snRNP complex, subu 94.5 0.025 5.4E-07 55.9 2.7 72 94-173 36-107 (668)
143 PF07576 BRAP2: BRCA1-associat 94.3 0.47 1E-05 36.9 9.0 68 98-166 13-81 (110)
144 KOG4210 Nuclear localization s 93.8 0.03 6.5E-07 51.0 1.6 81 96-176 86-167 (285)
145 PRK11634 ATP-dependent RNA hel 93.5 1.4 3E-05 44.7 13.0 67 100-175 488-561 (629)
146 KOG4574 RNA-binding protein (c 93.4 0.057 1.2E-06 54.8 2.8 74 100-178 300-375 (1007)
147 KOG2318 Uncharacterized conser 92.1 0.69 1.5E-05 45.4 8.1 79 95-173 171-302 (650)
148 KOG4285 Mitotic phosphoprotein 92.0 0.57 1.2E-05 42.5 6.9 68 99-173 198-266 (350)
149 KOG0804 Cytoplasmic Zn-finger 91.0 0.92 2E-05 43.3 7.5 69 97-166 73-142 (493)
150 KOG3262 H/ACA small nucleolar 87.8 16 0.00035 31.0 13.1 16 113-128 89-104 (215)
151 KOG4019 Calcineurin-mediated s 87.1 0.51 1.1E-05 39.7 2.6 77 97-178 9-91 (193)
152 KOG4483 Uncharacterized conser 84.3 2.4 5.3E-05 40.0 5.8 55 97-157 390-445 (528)
153 KOG2193 IGF-II mRNA-binding pr 84.2 0.053 1.1E-06 51.1 -5.0 78 97-176 79-156 (584)
154 KOG3973 Uncharacterized conser 83.5 2.1 4.5E-05 39.7 4.9 17 246-262 442-458 (465)
155 KOG4454 RNA binding protein (R 79.5 0.41 8.8E-06 41.6 -1.0 75 97-171 79-157 (267)
156 KOG4676 Splicing factor, argin 78.7 0.3 6.6E-06 45.7 -2.1 75 99-177 152-226 (479)
157 PF10567 Nab6_mRNP_bdg: RNA-re 78.2 5.1 0.00011 36.3 5.5 79 97-175 14-106 (309)
158 PF03468 XS: XS domain; Inter 77.8 2.3 5E-05 33.4 2.9 49 100-150 10-67 (116)
159 KOG4410 5-formyltetrahydrofola 77.7 15 0.00033 33.3 8.3 47 98-149 330-377 (396)
160 KOG2295 C2H2 Zn-finger protein 76.8 0.37 8.1E-06 47.0 -2.2 71 96-166 229-300 (648)
161 KOG4365 Uncharacterized conser 76.0 0.38 8.3E-06 45.7 -2.3 80 98-178 3-83 (572)
162 COG0724 RNA-binding proteins ( 71.7 4.4 9.6E-05 34.7 3.5 64 94-157 221-285 (306)
163 PF07530 PRE_C2HC: Associated 70.9 8.5 0.00018 27.1 4.1 60 113-175 2-63 (68)
164 smart00596 PRE_C2HC PRE_C2HC d 66.3 8.2 0.00018 27.3 3.1 59 113-174 2-62 (69)
165 PF00403 HMA: Heavy-metal-asso 66.0 27 0.00058 23.3 5.8 54 100-158 1-58 (62)
166 TIGR03636 L23_arch archaeal ri 62.5 31 0.00066 25.0 5.7 57 100-158 15-73 (77)
167 PRK14548 50S ribosomal protein 62.1 29 0.00064 25.5 5.6 56 101-158 23-80 (84)
168 PF15513 DUF4651: Domain of un 61.4 20 0.00043 24.9 4.2 20 113-132 9-28 (62)
169 KOG1295 Nonsense-mediated deca 61.3 9.5 0.00021 35.9 3.5 68 97-164 6-77 (376)
170 COG5638 Uncharacterized conser 59.3 26 0.00057 33.4 6.0 74 95-168 143-287 (622)
171 PRK10629 EnvZ/OmpR regulon mod 56.2 1E+02 0.0022 24.6 8.2 73 96-175 33-109 (127)
172 PF02714 DUF221: Domain of unk 54.9 13 0.00029 34.0 3.5 36 142-179 1-36 (325)
173 KOG4213 RNA-binding protein La 51.7 17 0.00038 30.7 3.2 55 99-158 112-169 (205)
174 PRK11230 glycolate oxidase sub 50.6 54 0.0012 32.3 7.1 50 111-160 202-255 (499)
175 PRK11901 hypothetical protein; 47.8 71 0.0015 29.6 6.8 59 98-161 245-306 (327)
176 COG2608 CopZ Copper chaperone 47.1 61 0.0013 22.7 5.1 46 98-148 3-48 (71)
177 PF14893 PNMA: PNMA 43.7 34 0.00074 31.9 4.2 95 83-184 6-104 (331)
178 KOG4008 rRNA processing protei 40.3 27 0.00058 30.8 2.8 35 94-128 36-70 (261)
179 PF15063 TC1: Thyroid cancer p 38.7 21 0.00046 25.7 1.6 28 99-126 26-53 (79)
180 CHL00123 rps6 ribosomal protei 38.2 1.7E+02 0.0037 21.9 7.6 67 100-170 10-91 (97)
181 PF09707 Cas_Cas2CT1978: CRISP 37.9 62 0.0014 23.9 4.1 50 96-147 23-72 (86)
182 PLN02805 D-lactate dehydrogena 37.0 94 0.002 31.2 6.4 51 110-160 278-332 (555)
183 TIGR00387 glcD glycolate oxida 36.9 90 0.002 29.8 6.2 63 98-160 131-198 (413)
184 PF12643 MazG-like: MazG-like 35.4 12 0.00026 28.4 -0.1 16 1-16 51-69 (98)
185 PF07292 NID: Nmi/IFP 35 domai 35.3 59 0.0013 24.2 3.6 33 142-174 1-34 (88)
186 KOG3702 Nuclear polyadenylated 34.4 19 0.0004 36.3 1.0 72 99-171 512-584 (681)
187 COG5193 LHP1 La protein, small 34.3 16 0.00034 34.7 0.5 59 99-157 175-244 (438)
188 PTZ00191 60S ribosomal protein 34.0 1.1E+02 0.0025 24.9 5.3 53 101-155 84-138 (145)
189 PF07292 NID: Nmi/IFP 35 domai 33.8 22 0.00048 26.4 1.1 23 97-119 51-73 (88)
190 COG0030 KsgA Dimethyladenosine 33.6 65 0.0014 28.9 4.3 34 98-131 95-128 (259)
191 COG3254 Uncharacterized conser 32.1 2.2E+02 0.0047 21.9 6.2 50 113-167 27-76 (105)
192 PF08156 NOP5NT: NOP5NT (NUC12 31.1 17 0.00037 25.5 0.1 39 113-160 27-65 (67)
193 PF07237 DUF1428: Protein of u 30.7 1.9E+02 0.0042 22.2 5.8 45 115-159 25-85 (103)
194 PRK06958 single-stranded DNA-b 29.0 3.6E+02 0.0078 22.9 8.6 16 265-280 165-180 (182)
195 KOG1655 Protein involved in va 28.9 46 0.001 28.5 2.4 18 270-287 157-174 (218)
196 KOG2891 Surface glycoprotein [ 28.7 1.2E+02 0.0026 27.6 5.0 69 96-164 147-247 (445)
197 PF08544 GHMP_kinases_C: GHMP 28.4 2.1E+02 0.0045 19.9 6.4 44 113-160 37-80 (85)
198 PF11823 DUF3343: Protein of u 28.1 68 0.0015 22.5 2.9 24 141-164 3-26 (73)
199 PF11411 DNA_ligase_IV: DNA li 27.9 46 0.00099 20.4 1.6 16 108-123 19-34 (36)
200 PRK10905 cell division protein 27.1 1.8E+02 0.0038 27.0 5.9 58 99-161 248-308 (328)
201 PRK11558 putative ssRNA endonu 26.7 96 0.0021 23.5 3.5 52 96-149 25-76 (97)
202 KOG2187 tRNA uracil-5-methyltr 26.5 53 0.0011 32.5 2.6 40 139-178 63-102 (534)
203 PF03439 Spt5-NGN: Early trans 25.3 1.3E+02 0.0028 21.8 4.0 26 138-163 43-68 (84)
204 PF12687 DUF3801: Protein of u 23.6 1.8E+02 0.004 25.0 5.2 58 110-169 39-100 (204)
205 COG4010 Uncharacterized protei 23.5 2.3E+02 0.005 23.2 5.3 47 105-160 118-164 (170)
206 KOG0226 RNA-binding proteins [ 23.1 33 0.0007 30.7 0.5 77 96-172 94-173 (290)
207 PF05189 RTC_insert: RNA 3'-te 23.0 1.8E+02 0.0039 21.7 4.6 48 100-147 12-65 (103)
208 COG0225 MsrA Peptide methionin 22.5 2.1E+02 0.0046 24.1 5.1 75 100-178 59-139 (174)
209 PF14026 DUF4242: Protein of u 22.2 3E+02 0.0065 19.6 8.4 62 101-164 3-71 (77)
210 KOG1232 Proteins containing th 22.1 1.1E+02 0.0024 29.2 3.7 52 105-156 231-286 (511)
211 KOG3293 Small nuclear ribonucl 21.4 1.5E+02 0.0032 23.4 3.7 14 158-171 55-68 (134)
212 cd04904 ACT_AAAH ACT domain of 21.2 2.9E+02 0.0064 19.1 7.6 50 112-161 14-65 (74)
213 PF11004 Kdo_hydroxy: 3-deoxy- 21.1 92 0.002 28.2 2.9 46 94-140 17-64 (281)
214 TIGR00110 ilvD dihydroxy-acid 21.0 3.4E+02 0.0074 27.1 7.0 65 98-178 355-419 (535)
215 COG0079 HisC Histidinol-phosph 21.0 1.6E+02 0.0034 27.7 4.6 50 97-156 145-198 (356)
216 cd00027 BRCT Breast Cancer Sup 20.9 2.4E+02 0.0052 18.0 5.3 28 99-126 2-29 (72)
217 TIGR00587 nfo apurinic endonuc 20.4 2.1E+02 0.0045 25.5 5.2 73 98-175 137-217 (274)
No 1
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.98 E-value=4.6e-31 Score=230.34 Aligned_cols=159 Identities=45% Similarity=0.711 Sum_probs=115.7
Q ss_pred CCCCCCCCHHHHHHhccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC-CCCCCccccccccccCCCCCC
Q 022894 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARRG-PLS-NARPSSYTIAKSFRRTRNFPW 78 (290)
Q Consensus 1 m~~~ld~slddii~~~~~~~~~~~~~~~~rg~g~g~g~~~~~~~~~g~g~~r~~-~~~-~~r~~~y~~~~~~~~~~~~~~ 78 (290)
|+++|||||||||+.+++ ++ +-+..++..++.++ ..++.+|.|+. ... ..+.. .+.+|
T Consensus 1 ms~~ld~sLd~iI~~~r~--r~--G~g~~r~~~r~~gg-----~~~~~~psR~~g~~r~~~~~~-----------~~~~w 60 (243)
T KOG0533|consen 1 MSDSLDMSLDDIIKSNRK--RG--GVGGKRGIKRRSGG-----QNRGRGPSRRTGKPRAQTRGG-----------IDGKW 60 (243)
T ss_pred CcchhhhhHHHHHHhccc--cC--CcCccccccccccC-----CccCCCCccccCcccccccCC-----------CCCcc
Confidence 899999999999999866 11 11111111111111 13334455542 111 11111 36889
Q ss_pred Cc--hhhHHHhhhcCC-CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHH
Q 022894 79 QH--DLFEDSLRAAGI-SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAA 155 (290)
Q Consensus 79 ~~--d~~~~~~~~~~~-~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~A 155 (290)
+| ++|+........ ......++|+|.|||+.|+++||++||++|+.++.+.|+|+++|.+.|+|-|+|...++|++|
T Consensus 61 ~~~~~v~~~~~~~~~~~~~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~a 140 (243)
T KOG0533|consen 61 QHDRDVFRSAKRLGAVGINETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERA 140 (243)
T ss_pred cchHHHHhcccccccccccCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHH
Confidence 99 677654432111 133445899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeCCeeeEEEEecCCCC
Q 022894 156 LKRYNNVLLDGKPMKIEVVGTNAE 179 (290)
Q Consensus 156 i~~lng~~l~G~~i~V~~a~~~~~ 179 (290)
|+.||++.|+|+.|+|+++.+...
T Consensus 141 vk~~~gv~ldG~~mk~~~i~~~~~ 164 (243)
T KOG0533|consen 141 VKKYNGVALDGRPMKIEIISSPSQ 164 (243)
T ss_pred HHHhcCcccCCceeeeEEecCccc
Confidence 999999999999999999877664
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=1.7e-20 Score=153.58 Aligned_cols=84 Identities=21% Similarity=0.415 Sum_probs=79.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
...+++|||+|||++++|++|+++|++||+|++|.|+.|+ ++++++||||+|.+.++|++||+.||++.|+++.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3467899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+.++.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 87554
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=7.4e-18 Score=156.53 Aligned_cols=82 Identities=32% Similarity=0.583 Sum_probs=76.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCC--eeeEEEE
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG--KPMKIEV 173 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G--~~i~V~~ 173 (290)
..++|||.|||+.+|+++|+++|++||+|+.|.|+.|+ ++++++||||+|.+.++|++||+.||++.|++ ++|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999998 99999999999999999999999999999876 6888998
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+....
T Consensus 272 a~~~~ 276 (346)
T TIGR01659 272 AEEHG 276 (346)
T ss_pred CCccc
Confidence 87653
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=6.3e-17 Score=150.66 Aligned_cols=82 Identities=21% Similarity=0.297 Sum_probs=78.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
.+.+|||.|||+.+++++|+++|++||.|++|+|++|. ++.++|||||+|.+.++|.+||+.||+..|+|+.|+|+|+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 34579999999999999999999999999999999999 99999999999999999999999999999999999999997
Q ss_pred CCC
Q 022894 176 TNA 178 (290)
Q Consensus 176 ~~~ 178 (290)
.+.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 664
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=4.4e-17 Score=151.36 Aligned_cols=84 Identities=26% Similarity=0.369 Sum_probs=79.2
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
.....++|||+|||+++|+++|+++|+.||+|++|+|+.|+ ++++++||||+|.++++|++||+.||+++|.+++|+|+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34568999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EecCC
Q 022894 173 VVGTN 177 (290)
Q Consensus 173 ~a~~~ 177 (290)
++.+.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 98654
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.70 E-value=1e-16 Score=149.26 Aligned_cols=82 Identities=32% Similarity=0.464 Sum_probs=78.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
+.++|||+|||+.+++++|+++|+.||+|.+|+|+.|+ +++++|||||+|.+.++|++||+.||+..|.++.|+|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 57899999999999999999999999999999999998 89999999999999999999999999999999999999987
Q ss_pred CCC
Q 022894 176 TNA 178 (290)
Q Consensus 176 ~~~ 178 (290)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 654
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=1.4e-16 Score=113.19 Aligned_cols=70 Identities=31% Similarity=0.613 Sum_probs=67.4
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeE
Q 022894 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (290)
Q Consensus 101 l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~ 170 (290)
|||+|||+++|+++|+++|++||.|..+.+..+.++.++++|||+|.+.++|++|++.||+..|+++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999988888999999999999999999999999999999885
No 8
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=4.4e-17 Score=126.96 Aligned_cols=79 Identities=33% Similarity=0.508 Sum_probs=76.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
..+++|||+||++.|+|++|.+||+.+|+|..|.|-.|+ +..++|||||+|.+.++|+.||+.++++.|+.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 478999999999999999999999999999999999999 8889999999999999999999999999999999999975
No 9
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.2e-16 Score=135.53 Aligned_cols=81 Identities=28% Similarity=0.386 Sum_probs=78.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
..++|.|.||+.+++|++|++||..||.|.+|.|..|+ ||.++|||||+|.+.++|++||+.||++-++.-.|.|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 57899999999999999999999999999999999999 99999999999999999999999999999999999999998
Q ss_pred CC
Q 022894 176 TN 177 (290)
Q Consensus 176 ~~ 177 (290)
|.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 10
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.64 E-value=3.1e-16 Score=131.54 Aligned_cols=87 Identities=26% Similarity=0.382 Sum_probs=82.4
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeE
Q 022894 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (290)
Q Consensus 92 ~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~ 170 (290)
+|.++.-++|.|-||.+.|+.++|..+|++||.|-+|.|..|+ |..++|||||-|.+..+|+.|+++|++.+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 4667788999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 022894 171 IEVVGTNA 178 (290)
Q Consensus 171 V~~a~~~~ 178 (290)
|++|.-..
T Consensus 87 Vq~arygr 94 (256)
T KOG4207|consen 87 VQMARYGR 94 (256)
T ss_pred ehhhhcCC
Confidence 99997543
No 11
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=5.9e-16 Score=126.82 Aligned_cols=78 Identities=26% Similarity=0.369 Sum_probs=73.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
..++|||+||+..+++.||+.+|..||+|..|.|..+ +.|||||||+++.+|+.|+..|++..|+|..|+|+++.-
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 4799999999999999999999999999999988875 489999999999999999999999999999999999876
Q ss_pred CC
Q 022894 177 NA 178 (290)
Q Consensus 177 ~~ 178 (290)
..
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 54
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.64 E-value=9.9e-15 Score=142.83 Aligned_cols=78 Identities=27% Similarity=0.363 Sum_probs=71.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc--CCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEI--GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~--G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
....++|||+||++++++++|+++|++| |+|++|.++ ++||||+|.+.++|++||+.||+.+|+++.|+|+
T Consensus 230 ~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 230 MAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred cccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456889999999999999999999999 999999876 5699999999999999999999999999999999
Q ss_pred EecCCCC
Q 022894 173 VVGTNAE 179 (290)
Q Consensus 173 ~a~~~~~ 179 (290)
|+++...
T Consensus 303 ~Akp~~~ 309 (578)
T TIGR01648 303 LAKPVDK 309 (578)
T ss_pred EccCCCc
Confidence 9987654
No 13
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=2e-15 Score=132.85 Aligned_cols=101 Identities=26% Similarity=0.377 Sum_probs=91.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.++-+||||.-|+++++|..|+..|+.||+|+.|.|+.|+ |++++|||||+|+++.+..+|.+..++.+|+++.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 3567899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcccccCCCCCCCCC
Q 022894 174 VGTNAEIPLQARVNVTGVNGRR 195 (290)
Q Consensus 174 a~~~~~~~~~~r~~~~g~~g~~ 195 (290)
-.......+.+|.-..|+++..
T Consensus 178 ERgRTvkgW~PRRLGGGLGg~r 199 (335)
T KOG0113|consen 178 ERGRTVKGWLPRRLGGGLGGRR 199 (335)
T ss_pred cccccccccccccccCCcCCcc
Confidence 9888877777766555554443
No 14
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.60 E-value=5.6e-15 Score=105.60 Aligned_cols=70 Identities=33% Similarity=0.596 Sum_probs=65.0
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeE
Q 022894 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (290)
Q Consensus 101 l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~ 170 (290)
|||+|||+++++++|.++|+.||.|..+.+..++.+.++++|||+|.++++|++|++.+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999988788999999999999999999999999999999874
No 15
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=2.7e-15 Score=118.04 Aligned_cols=84 Identities=26% Similarity=0.415 Sum_probs=79.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
+-.+..|||.+++..++|++|.+.|..||+|+.|.+..|+ ||..||||+|+|++.++|++||+.||+..|.+++|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 4456799999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+-...
T Consensus 149 ~Fv~g 153 (170)
T KOG0130|consen 149 CFVKG 153 (170)
T ss_pred EEecC
Confidence 86543
No 16
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=2.6e-15 Score=128.43 Aligned_cols=81 Identities=25% Similarity=0.364 Sum_probs=74.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
+..-++|||++|+|.+..++|+++|++||+|+++.|+.|+ ++++|||+||+|.+.++|.+|++. .+-.|||++..+.|
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 3456899999999999999999999999999999999999 999999999999999999999954 56789999998888
Q ss_pred ecC
Q 022894 174 VGT 176 (290)
Q Consensus 174 a~~ 176 (290)
|.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 753
No 17
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=1.2e-14 Score=128.00 Aligned_cols=77 Identities=22% Similarity=0.240 Sum_probs=71.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
..++|||+|||+.+++++|+++|+.||+|++|.|+.+. .+++||||+|.++++|+.|| .||+..|.++.|.|.++..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 36899999999999999999999999999999999886 24789999999999999999 5999999999999999764
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.57 E-value=1.4e-14 Score=142.05 Aligned_cols=83 Identities=19% Similarity=0.346 Sum_probs=78.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
..++|||+|||+++++++|+++|+.||.|++|.|..|+ +++++|||||+|.+.++|.+||+.||+++|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999999998 88999999999999999999999999999999999999987
Q ss_pred CCCC
Q 022894 176 TNAE 179 (290)
Q Consensus 176 ~~~~ 179 (290)
+.+.
T Consensus 283 ~pP~ 286 (612)
T TIGR01645 283 TPPD 286 (612)
T ss_pred CCcc
Confidence 6553
No 19
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=9.9e-15 Score=130.02 Aligned_cols=83 Identities=20% Similarity=0.362 Sum_probs=76.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
....++|+|+|||+..-|-||+.+|++||.|.+|+|+.+..| +|||+||+|++.+||++|-++||+..|.|++|+|..+
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 345689999999999999999999999999999999998754 5999999999999999999999999999999999998
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
..+.
T Consensus 172 TarV 175 (376)
T KOG0125|consen 172 TARV 175 (376)
T ss_pred chhh
Confidence 7654
No 20
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=2e-14 Score=118.83 Aligned_cols=78 Identities=22% Similarity=0.344 Sum_probs=70.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
...++|||+|||.++-+.+|++||.+||.|..|.|...+ ....||||+|+++.+|+.||..-++..+++..|.|+|+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 457899999999999999999999999999999886543 335699999999999999999999999999999999764
No 21
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=4.1e-15 Score=137.05 Aligned_cols=114 Identities=25% Similarity=0.360 Sum_probs=94.5
Q ss_pred CCCCCccccccccccCCCCCCCchhhHHHhhhc---CCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC
Q 022894 58 NARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAA---GISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK 134 (290)
Q Consensus 58 ~~r~~~y~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~ 134 (290)
+.+.+.|+++|.. ...-..|.|....+|.... ....+..-+.|||+||+.+||||.|+++|++||.|.+|+.+.|
T Consensus 217 ~H~~Aa~aRrKl~-~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD- 294 (506)
T KOG0117|consen 217 SHRAAAMARRKLM-PGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD- 294 (506)
T ss_pred cchhHHHHHhhcc-CCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-
Confidence 5677788877765 3334568888777765332 2234456678999999999999999999999999999988854
Q ss_pred CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecCCCC
Q 022894 135 NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 179 (290)
Q Consensus 135 tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~~~~ 179 (290)
||||+|.+.++|.+||+.+|+++|+|..|.|.||++...
T Consensus 295 ------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 295 ------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred ------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 999999999999999999999999999999999998764
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.55 E-value=1.6e-14 Score=141.76 Aligned_cols=81 Identities=26% Similarity=0.447 Sum_probs=76.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
....++|||+||++.+++++|+++|..||+|++|.|+.|+ +++++|||||+|.+.++|++||+.||++.|+|+.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 4467899999999999999999999999999999999998 999999999999999999999999999999999999986
Q ss_pred ec
Q 022894 174 VG 175 (290)
Q Consensus 174 a~ 175 (290)
..
T Consensus 184 p~ 185 (612)
T TIGR01645 184 PS 185 (612)
T ss_pred cc
Confidence 43
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.55 E-value=2.2e-14 Score=141.87 Aligned_cols=80 Identities=30% Similarity=0.438 Sum_probs=75.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecCC
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~~ 177 (290)
.+|||+|||++|||++|.++|++||+|.+|+|+.|. +++++|||||+|.+.++|++||+.||+..|+++.|+|.|+..+
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 479999999999999999999999999999999999 8999999999999999999999999999999999999998654
Q ss_pred C
Q 022894 178 A 178 (290)
Q Consensus 178 ~ 178 (290)
+
T Consensus 81 ~ 81 (562)
T TIGR01628 81 P 81 (562)
T ss_pred c
Confidence 4
No 24
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.55 E-value=2e-14 Score=140.74 Aligned_cols=80 Identities=21% Similarity=0.383 Sum_probs=73.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC-CeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~-G~~i~V~~ 173 (290)
....++|||+|||++++|++|+++|++||+|.+|+|+.|.++++++||||+|.+.++|++||+.||+.+|. ++.|.|.+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999885 67766654
Q ss_pred e
Q 022894 174 V 174 (290)
Q Consensus 174 a 174 (290)
+
T Consensus 135 S 135 (578)
T TIGR01648 135 S 135 (578)
T ss_pred c
Confidence 4
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.54 E-value=4.3e-14 Score=138.02 Aligned_cols=82 Identities=23% Similarity=0.318 Sum_probs=77.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
..++|||+|||+.+++++|+++|+.||.|+.+.|+.+. ++.++|||||+|.+.++|+.||+.||++.|.++.|.|+++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 35799999999999999999999999999999999998 89999999999999999999999999999999999999986
Q ss_pred CCC
Q 022894 176 TNA 178 (290)
Q Consensus 176 ~~~ 178 (290)
...
T Consensus 374 ~~~ 376 (509)
T TIGR01642 374 VGA 376 (509)
T ss_pred cCC
Confidence 543
No 26
>smart00362 RRM_2 RNA recognition motif.
Probab=99.54 E-value=4.9e-14 Score=99.21 Aligned_cols=72 Identities=38% Similarity=0.657 Sum_probs=67.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
+|||.|||..+++++|+++|..||+|..+.+..++ +.++++|||+|.+.++|++|++.+++..|.++.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 6778999999999999999999999999999998873
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.54 E-value=3.7e-14 Score=136.74 Aligned_cols=81 Identities=30% Similarity=0.518 Sum_probs=76.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
..++|||+|||+.+|+++|+++|+.||.|..|.|+.+. ++++++||||+|.+.++|.+||+.||++.|.+++|+|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36899999999999999999999999999999999998 78999999999999999999999999999999999999987
Q ss_pred CC
Q 022894 176 TN 177 (290)
Q Consensus 176 ~~ 177 (290)
..
T Consensus 265 ~~ 266 (457)
T TIGR01622 265 DS 266 (457)
T ss_pred CC
Confidence 43
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.53 E-value=4.7e-14 Score=139.57 Aligned_cols=83 Identities=31% Similarity=0.547 Sum_probs=79.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
...++|||+||++.+++++|+++|+.||.|++|+|+.|.++.++|||||+|.+.++|++||+.||+..|+|++|.|.++.
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 022894 176 TNA 178 (290)
Q Consensus 176 ~~~ 178 (290)
.+.
T Consensus 363 ~k~ 365 (562)
T TIGR01628 363 RKE 365 (562)
T ss_pred CcH
Confidence 654
No 29
>PLN03213 repressor of silencing 3; Provisional
Probab=99.53 E-value=3.2e-14 Score=132.60 Aligned_cols=79 Identities=20% Similarity=0.343 Sum_probs=72.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCH--HHHHHHHHHhCCceeCCeeeEEEE
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARR--SDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~--~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
....+|||+||++.|+++||..+|..||.|.+|.|++. ++ +|||||+|.+. +++.+||+.||+.+++|+.|+|+.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 35689999999999999999999999999999999932 66 89999999987 789999999999999999999999
Q ss_pred ecCC
Q 022894 174 VGTN 177 (290)
Q Consensus 174 a~~~ 177 (290)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8764
No 30
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=4.4e-14 Score=122.44 Aligned_cols=86 Identities=31% Similarity=0.456 Sum_probs=81.7
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
..+.-+.|.|.-||.++|+++|+.||...|+|++|++++|+ +|.+.||+||.|.+++||++||..||+..|..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 34567889999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 022894 173 VVGTNAE 179 (290)
Q Consensus 173 ~a~~~~~ 179 (290)
++.|..+
T Consensus 117 yARPSs~ 123 (360)
T KOG0145|consen 117 YARPSSD 123 (360)
T ss_pred eccCChh
Confidence 9998764
No 31
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.52 E-value=9.9e-14 Score=120.45 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=70.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
.+.+|||+||++.+|+++|+++|+.||+|.+|.|+.|. ..++||||+|.++++|+.|| .||+..|.+++|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 56899999999999999999999999999999999884 45679999999999999999 8999999999999987653
No 32
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.50 E-value=1.7e-13 Score=132.16 Aligned_cols=81 Identities=21% Similarity=0.338 Sum_probs=75.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
....++|||.|||+.+++++|+++|+.||.|..|.|+.|+ +++++|||||+|.+.++|++|| .|++..|.+++|.|++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999998 8999999999999999999999 5899999999999988
Q ss_pred ecC
Q 022894 174 VGT 176 (290)
Q Consensus 174 a~~ 176 (290)
+..
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 653
No 33
>smart00360 RRM RNA recognition motif.
Probab=99.49 E-value=1.5e-13 Score=96.30 Aligned_cols=70 Identities=40% Similarity=0.654 Sum_probs=66.1
Q ss_pred EeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 103 VSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 103 V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
|.|||..+++++|+++|+.||.|..+.+..++ ++.++++|||+|.+.++|.+|++.|++..++++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999888 78899999999999999999999999999999998874
No 34
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=1.7e-13 Score=103.31 Aligned_cols=82 Identities=26% Similarity=0.347 Sum_probs=74.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
.+.+..|||.|||+.+|.++..+||.+||.|..|+|-..+ ..+|.|||+|++..+|.+|++.|++..++++.|.|-+-
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 4567899999999999999999999999999999887665 45899999999999999999999999999999999887
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
++..
T Consensus 93 q~~~ 96 (124)
T KOG0114|consen 93 QPED 96 (124)
T ss_pred CHHH
Confidence 6543
No 35
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.47 E-value=5.3e-13 Score=94.36 Aligned_cols=74 Identities=39% Similarity=0.631 Sum_probs=69.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
+|+|.|||+.+++++|+++|..||.|..+.+..++...++++|||+|.+.++|..|++.+++..++++.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999999888557799999999999999999999999999999999864
No 36
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=2e-13 Score=126.03 Aligned_cols=84 Identities=26% Similarity=0.428 Sum_probs=78.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCcee-CCeeeEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLL-DGKPMKIE 172 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l-~G~~i~V~ 172 (290)
.+.+|-|||+.||.++.|++|.-||++.|+|-+++|+.|+ +|.++|||||+|.+.++|++||+.||+++| .|+.|.|+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 4678999999999999999999999999999999999998 999999999999999999999999999999 58999988
Q ss_pred EecCCC
Q 022894 173 VVGTNA 178 (290)
Q Consensus 173 ~a~~~~ 178 (290)
++..+.
T Consensus 160 ~Svan~ 165 (506)
T KOG0117|consen 160 VSVANC 165 (506)
T ss_pred Eeeecc
Confidence 776543
No 37
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.47 E-value=2.6e-13 Score=119.38 Aligned_cols=79 Identities=32% Similarity=0.554 Sum_probs=76.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
.++|||+|||+.+++++|.++|..||.|..|.|..++ ++.+++||||+|.+.++|..|++.|++..|.++.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999999997 999999999999999999999999999999999999999653
No 38
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=6.7e-15 Score=121.31 Aligned_cols=79 Identities=24% Similarity=0.427 Sum_probs=75.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
.+.-|||+|||+.+||.||-.+|++||+|++|.+++|+ ||+++||||+.|++.-+..-||..||+..|.|+.|+|..+.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 57889999999999999999999999999999999999 99999999999999999999999999999999999998764
No 39
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.46 E-value=8.1e-14 Score=115.01 Aligned_cols=81 Identities=27% Similarity=0.384 Sum_probs=77.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.....||||+||+..++++.|++||-+.|+|+++.|..|+ +..++|||||+|.++|+|+-||+.||.+.|.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 3467899999999999999999999999999999999999 888999999999999999999999999999999999998
Q ss_pred ec
Q 022894 174 VG 175 (290)
Q Consensus 174 a~ 175 (290)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 87
No 40
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.8e-13 Score=118.06 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=75.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
.+.+|+|||+||+..+||++|+++|+.||+|.+|+|..+ +||+||.|++.|+|..||..+|+.+|.|+.+++.|-
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 458999999999999999999999999999999999966 899999999999999999999999999999999998
Q ss_pred cCCCC
Q 022894 175 GTNAE 179 (290)
Q Consensus 175 ~~~~~ 179 (290)
++...
T Consensus 236 Ke~~~ 240 (321)
T KOG0148|consen 236 KEGDD 240 (321)
T ss_pred ccCCC
Confidence 87654
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=7.5e-14 Score=121.41 Aligned_cols=84 Identities=15% Similarity=0.293 Sum_probs=80.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
+.+|.|||-.||.+..+.+|..+|..||.|++.+|..|+ |+.+|+|+||.|+++.+|++||..||++.|.-++|+|++.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 478999999999999999999999999999999999999 9999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 022894 175 GTNAE 179 (290)
Q Consensus 175 ~~~~~ 179 (290)
.++..
T Consensus 363 RPkda 367 (371)
T KOG0146|consen 363 RPKDA 367 (371)
T ss_pred Ccccc
Confidence 87763
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.45 E-value=4.7e-13 Score=130.10 Aligned_cols=80 Identities=30% Similarity=0.337 Sum_probs=73.5
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~-~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.+++++|||+||++ .+|+++|++||+.||.|.+|+|+.++ ++||||+|.+.++|+.||+.||+..|.|++|+|++
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 34678999999998 69999999999999999999999864 68999999999999999999999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
++...
T Consensus 348 s~~~~ 352 (481)
T TIGR01649 348 SKQQN 352 (481)
T ss_pred ccccc
Confidence 86543
No 43
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.45 E-value=5.3e-13 Score=122.95 Aligned_cols=79 Identities=19% Similarity=0.415 Sum_probs=74.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHh-ccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFS-EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~-~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
....+||.|||+++.|.||++||. +.|+|+.|.++.|.+++++|||.|+|+++|.+++|++.||.++++|++|+|+...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 445699999999999999999995 7999999999999999999999999999999999999999999999999998543
No 44
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=3e-13 Score=117.91 Aligned_cols=81 Identities=22% Similarity=0.427 Sum_probs=77.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
...|||+.|...++.++|++.|.+||+|.+++|++|. |+++|||+||.|.+.++|+.||..||+..|..+.|+..||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 4579999999999999999999999999999999999 999999999999999999999999999999999999999987
Q ss_pred CC
Q 022894 177 NA 178 (290)
Q Consensus 177 ~~ 178 (290)
++
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 76
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.42 E-value=7.9e-13 Score=128.55 Aligned_cols=76 Identities=17% Similarity=0.174 Sum_probs=69.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHh--CCceeCCeeeEEEEe
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY--NNVLLDGKPMKIEVV 174 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~l--ng~~l~G~~i~V~~a 174 (290)
++++|||+|||+.+++++|+++|+.||.|.+|.|+. .++||||+|.+.++|++||+.| ++..|.|++|.|+++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 478999999999999999999999999999999984 3689999999999999999875 779999999999998
Q ss_pred cCC
Q 022894 175 GTN 177 (290)
Q Consensus 175 ~~~ 177 (290)
...
T Consensus 76 ~~~ 78 (481)
T TIGR01649 76 TSQ 78 (481)
T ss_pred CCc
Confidence 643
No 46
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.3e-13 Score=116.96 Aligned_cols=83 Identities=24% Similarity=0.369 Sum_probs=79.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
..-.+|||++|..+|+|.-|...|-.||.|+.|.+..|. +.++++|+||+|...|+|.+||..||..+|.|+.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 356899999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
+|..
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8765
No 47
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=3.8e-13 Score=121.01 Aligned_cols=86 Identities=20% Similarity=0.360 Sum_probs=81.3
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
-.++.+.|||..|.+.++++||+-+|+.||.|..|.|+.|. |+.+..||||+|++.+++++|.-+|+++.|+.+.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 45788999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 022894 173 VVGTNAE 179 (290)
Q Consensus 173 ~a~~~~~ 179 (290)
|+++-..
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9876543
No 48
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.40 E-value=7.2e-13 Score=125.45 Aligned_cols=81 Identities=16% Similarity=0.445 Sum_probs=78.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecCC
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~~ 177 (290)
+.|||+|||+++++++|.++|+..|.|.++++++|+ +|+++||+||+|.+.++|+.|++.||+.++.+++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999999999998765
Q ss_pred CC
Q 022894 178 AE 179 (290)
Q Consensus 178 ~~ 179 (290)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 53
No 49
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.1e-12 Score=123.69 Aligned_cols=84 Identities=32% Similarity=0.490 Sum_probs=76.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHh-----CC-ceeCCee
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRY-----NN-VLLDGKP 168 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~l-----ng-~~l~G~~ 168 (290)
.-..+|||.|||+++|+++|.++|++||+|.++.|+.++ |+.++|+|||.|.++.+|++||+.. .+ +.|+|+.
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 345899999999999999999999999999999999999 9999999999999999999999876 23 7789999
Q ss_pred eEEEEecCCCC
Q 022894 169 MKIEVVGTNAE 179 (290)
Q Consensus 169 i~V~~a~~~~~ 179 (290)
|+|.++.+..+
T Consensus 370 Lkv~~Av~Rke 380 (678)
T KOG0127|consen 370 LKVTLAVTRKE 380 (678)
T ss_pred EeeeeccchHH
Confidence 99999877654
No 50
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=8.5e-13 Score=121.45 Aligned_cols=85 Identities=26% Similarity=0.415 Sum_probs=75.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCc-eeC--CeeeE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNV-LLD--GKPMK 170 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~-~l~--G~~i~ 170 (290)
+....+|||+.||..++|.||++||++||.|.+|.|+.|+ ++.++|||||.|.+.++|.+|+.+|++. +|- ..+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3467899999999999999999999999999999999999 9999999999999999999999999984 454 46788
Q ss_pred EEEecCCCC
Q 022894 171 IEVVGTNAE 179 (290)
Q Consensus 171 V~~a~~~~~ 179 (290)
|.+|....+
T Consensus 111 vk~Ad~E~e 119 (510)
T KOG0144|consen 111 VKYADGERE 119 (510)
T ss_pred ecccchhhh
Confidence 888865543
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.7e-12 Score=122.47 Aligned_cols=82 Identities=26% Similarity=0.405 Sum_probs=77.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
+-.+|.|.||||.|...||+.+|+.||.|..|.|+....++.+|||||.|....+|..||+.||+++|+|++|-|.||.+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 36799999999999999999999999999999999777778789999999999999999999999999999999999987
Q ss_pred CC
Q 022894 177 NA 178 (290)
Q Consensus 177 ~~ 178 (290)
+.
T Consensus 196 Kd 197 (678)
T KOG0127|consen 196 KD 197 (678)
T ss_pred cc
Confidence 65
No 52
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=4.9e-12 Score=109.83 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=78.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
...+..|||-||.+++.|.-|++||..||.|..|+|++|. +.++|||+||++.+.++|..||..||+..|.++.|.|.|
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 3456799999999999999999999999999999999999 799999999999999999999999999999999999998
Q ss_pred ecCC
Q 022894 174 VGTN 177 (290)
Q Consensus 174 a~~~ 177 (290)
...+
T Consensus 355 Ktnk 358 (360)
T KOG0145|consen 355 KTNK 358 (360)
T ss_pred ecCC
Confidence 7654
No 53
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=9.4e-13 Score=121.16 Aligned_cols=84 Identities=27% Similarity=0.464 Sum_probs=77.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCc-eeC--CeeeEEEE
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV-LLD--GKPMKIEV 173 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~-~l~--G~~i~V~~ 173 (290)
...+|||+-|+..+||.+|+++|+.||.|++|.|++|..+.++|||||+|.+.|.|..||+.||+. ++. ..+|.|.|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 467999999999999999999999999999999999999999999999999999999999999994 454 46899999
Q ss_pred ecCCCCC
Q 022894 174 VGTNAEI 180 (290)
Q Consensus 174 a~~~~~~ 180 (290)
|.++.++
T Consensus 203 ADtqkdk 209 (510)
T KOG0144|consen 203 ADTQKDK 209 (510)
T ss_pred cccCCCc
Confidence 9887754
No 54
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.33 E-value=7.7e-12 Score=85.56 Aligned_cols=56 Identities=34% Similarity=0.535 Sum_probs=50.8
Q ss_pred HHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 115 IRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 115 L~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
|.++|++||+|++|.+..+. .++|||+|.+.++|++|++.||+..|+|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999987553 589999999999999999999999999999999986
No 55
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=1.3e-11 Score=88.57 Aligned_cols=61 Identities=28% Similarity=0.486 Sum_probs=55.0
Q ss_pred HHHHHHHHh----ccCCeeEEE-EEeCC-C--CCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 112 NDDIRELFS----EIGELKRYA-IHFDK-N--GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 112 e~dL~~~F~----~~G~i~~v~-i~~d~-t--g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
+++|+++|. .||.|.+|. |..++ + +.++||+||+|.+.++|.+|++.||+..|+++.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678899998 999999995 66666 5 8899999999999999999999999999999999863
No 56
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.29 E-value=4e-12 Score=120.24 Aligned_cols=82 Identities=30% Similarity=0.547 Sum_probs=77.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecCCC
Q 022894 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (290)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~~~ 178 (290)
.|||+||++++++++|..+|+.||.|..|.++.|. ||.++||+||+|.+.++|.+|+++||+++|-|+.|+|..+....
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 39999999999999999999999999999999998 99999999999999999999999999999999999999887665
Q ss_pred CCC
Q 022894 179 EIP 181 (290)
Q Consensus 179 ~~~ 181 (290)
...
T Consensus 360 ~~~ 362 (549)
T KOG0147|consen 360 DTK 362 (549)
T ss_pred ccc
Confidence 433
No 57
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.28 E-value=5.2e-12 Score=111.19 Aligned_cols=73 Identities=22% Similarity=0.375 Sum_probs=69.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecCCC
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~~~ 178 (290)
.+|||+|||..+++.+|+.||++||+|.+|.|+ |.|+||+.++...|+.||..||+.+|+|..|+|+-++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-------cccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 579999999999999999999999999999999 6699999999999999999999999999999999988773
No 58
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=3e-12 Score=115.72 Aligned_cols=77 Identities=27% Similarity=0.464 Sum_probs=74.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
--|+|||+.|.+.+.|+.|+..|..||+|++|.+.+|+ |+++|+||||+|+-+|.|+-|++.||+..+.|+.|+|-.
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 35899999999999999999999999999999999999 999999999999999999999999999999999999973
No 59
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.26 E-value=6e-12 Score=110.82 Aligned_cols=77 Identities=29% Similarity=0.438 Sum_probs=72.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
...+++|+|.||.+.++.++|++.|++||+|.+|+|+ ++|+||.|+..++|..||..||+.+|+|++|+|+++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee-------cceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 4468899999999999999999999999999999999 569999999999999999999999999999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.+..
T Consensus 148 tsrl 151 (346)
T KOG0109|consen 148 TSRL 151 (346)
T ss_pred cccc
Confidence 8765
No 60
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.26 E-value=5.6e-11 Score=116.26 Aligned_cols=75 Identities=32% Similarity=0.470 Sum_probs=70.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
-++||||+.|+..|+|.||..+|+.||+|.+|.++. +++||||+..+..+|++|+.+|+++.|..+.|+|.|+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 357999999999999999999999999999999984 589999999999999999999999999999999999853
No 61
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.25 E-value=5.7e-11 Score=112.00 Aligned_cols=81 Identities=20% Similarity=0.369 Sum_probs=68.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
...+|||.|||+++++++|+++|..||+|+...|..-. .++..+|+||+|.+.++++.||++ +-..|++++|.|+...
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 34559999999999999999999999999987776644 444459999999999999999976 5889999999999766
Q ss_pred CCC
Q 022894 176 TNA 178 (290)
Q Consensus 176 ~~~ 178 (290)
+..
T Consensus 366 ~~~ 368 (419)
T KOG0116|consen 366 PGF 368 (419)
T ss_pred ccc
Confidence 543
No 62
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.23 E-value=3.4e-11 Score=102.94 Aligned_cols=84 Identities=29% Similarity=0.528 Sum_probs=75.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHH----HHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRE----LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~----~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~ 170 (290)
+.++.||||.||+..+..++|+. ||++||.|..|.+. ++.+.+|-|||+|.+.+.|..|+.+|+|+.+.|++|+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~--kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF--KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec--CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 44566999999999999999887 99999999977665 4568899999999999999999999999999999999
Q ss_pred EEEecCCCCC
Q 022894 171 IEVVGTNAEI 180 (290)
Q Consensus 171 V~~a~~~~~~ 180 (290)
|++|+.+.+.
T Consensus 84 iqyA~s~sdi 93 (221)
T KOG4206|consen 84 IQYAKSDSDI 93 (221)
T ss_pred eecccCccch
Confidence 9999988753
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=5e-11 Score=111.72 Aligned_cols=77 Identities=26% Similarity=0.503 Sum_probs=73.4
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecCCCC
Q 022894 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 179 (290)
Q Consensus 101 l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~~~~ 179 (290)
|||.||++.++..+|.++|+.||+|.+|+|..+..+ +++| ||+|+++++|.+||+.||+..+.+++|.|.+......
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 999999999999999999999999999999999988 8999 9999999999999999999999999999988776554
No 64
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.17 E-value=4.8e-11 Score=98.70 Aligned_cols=85 Identities=28% Similarity=0.414 Sum_probs=77.7
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeE-EEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~-v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
....+.+|||+||++.++|..|.++|+.||.|.. -+|+++. |+.+++|+||.|++.+.+.+||..+|++.++.++|+|
T Consensus 92 nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv 171 (203)
T KOG0131|consen 92 NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITV 171 (203)
T ss_pred cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEE
Confidence 4566789999999999999999999999999875 3788888 8999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 022894 172 EVVGTNA 178 (290)
Q Consensus 172 ~~a~~~~ 178 (290)
+++..+.
T Consensus 172 ~ya~k~~ 178 (203)
T KOG0131|consen 172 SYAFKKD 178 (203)
T ss_pred EEEEecC
Confidence 9987554
No 65
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.15 E-value=1.1e-10 Score=114.07 Aligned_cols=72 Identities=15% Similarity=0.327 Sum_probs=60.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc------------CCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCcee
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEI------------GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL 164 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~------------G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l 164 (290)
...+|||+|||+.+|+++|+++|.+| ..|..+.+. ..++||||+|.+.++|..|| .||++.|
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----KEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----CCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 35689999999999999999999975 233344433 45899999999999999999 6999999
Q ss_pred CCeeeEEEEe
Q 022894 165 DGKPMKIEVV 174 (290)
Q Consensus 165 ~G~~i~V~~a 174 (290)
.++.|+|...
T Consensus 248 ~g~~l~v~r~ 257 (509)
T TIGR01642 248 SNVFLKIRRP 257 (509)
T ss_pred eCceeEecCc
Confidence 9999998743
No 66
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.09 E-value=3.6e-10 Score=95.35 Aligned_cols=84 Identities=24% Similarity=0.361 Sum_probs=76.9
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcc-CCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEI-GELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~-G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
.......+||..||..+.+.+|..+|.+| |.|..+++.+++ ||.+++||||+|++++.|+-|-+.||+..|.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34566789999999999999999999988 778888887888 9999999999999999999999999999999999999
Q ss_pred EEecCC
Q 022894 172 EVVGTN 177 (290)
Q Consensus 172 ~~a~~~ 177 (290)
.+..+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 988766
No 67
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.08 E-value=2.2e-10 Score=105.86 Aligned_cols=77 Identities=27% Similarity=0.355 Sum_probs=69.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.....|+|||+|||+++||+.|++-|.+||.|..+.|+ ..+++++ .|.|.++++|+.|+..||+..|+|+.|+|.+
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim--e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM--ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhh--ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 35678999999999999999999999999999998884 3567775 8999999999999999999999999999986
Q ss_pred e
Q 022894 174 V 174 (290)
Q Consensus 174 a 174 (290)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 68
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=3.8e-10 Score=109.72 Aligned_cols=79 Identities=32% Similarity=0.447 Sum_probs=71.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCC----CCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNG----RPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg----~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
..++|||.||++.+|.++|..+|...|.|..|.|...+.. .+.||+||+|.++++|++|++.|+++.|+|+.|.|+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3345999999999999999999999999999988776643 355999999999999999999999999999999999
Q ss_pred Eec
Q 022894 173 VVG 175 (290)
Q Consensus 173 ~a~ 175 (290)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 988
No 69
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.04 E-value=4.6e-10 Score=106.66 Aligned_cols=82 Identities=18% Similarity=0.316 Sum_probs=76.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
.+..|||++|...+-..||+.||++||.|+-++|+.+. +.-.++|+||++.+.++|.+||+.|+.++|.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 45689999999999999999999999999999999987 77778999999999999999999999999999999999887
Q ss_pred CCC
Q 022894 176 TNA 178 (290)
Q Consensus 176 ~~~ 178 (290)
..+
T Consensus 484 NEp 486 (940)
T KOG4661|consen 484 NEP 486 (940)
T ss_pred cCc
Confidence 655
No 70
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=6.5e-10 Score=100.23 Aligned_cols=80 Identities=26% Similarity=0.350 Sum_probs=70.8
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHh-CCceeCCeeeE
Q 022894 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY-NNVLLDGKPMK 170 (290)
Q Consensus 92 ~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~l-ng~~l~G~~i~ 170 (290)
++.+...++|||++|-..++|.||.++|.+||+|..|.+... +++|||+|.+.++|+.|.+++ |...|+|++|+
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 345566789999999889999999999999999999998854 679999999999999988765 55778999999
Q ss_pred EEEecC
Q 022894 171 IEVVGT 176 (290)
Q Consensus 171 V~~a~~ 176 (290)
|.|..+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999987
No 71
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.03 E-value=2.3e-10 Score=104.17 Aligned_cols=83 Identities=25% Similarity=0.372 Sum_probs=75.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
..++|||++|+|.++++.|+++|.+||+|.+|.|+.|+ ++++++|+||+|++++...++|. ...+.|+++.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 68999999999999999999999999999999999999 99999999999999998888884 46788999999998887
Q ss_pred CCCCC
Q 022894 176 TNAEI 180 (290)
Q Consensus 176 ~~~~~ 180 (290)
+....
T Consensus 84 ~r~~~ 88 (311)
T KOG4205|consen 84 SREDQ 88 (311)
T ss_pred Ccccc
Confidence 76643
No 72
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=1.2e-10 Score=98.97 Aligned_cols=93 Identities=23% Similarity=0.280 Sum_probs=82.4
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
+..+...||||.||...|+|+-|.|||-+.|+|.+|.|..++.++.| ||||+|.++..+.-|++.+|+..|.+..|+|+
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 44567889999999999999999999999999999999998888888 99999999999999999999999999999999
Q ss_pred EecCCCCCCccccc
Q 022894 173 VVGTNAEIPLQARV 186 (290)
Q Consensus 173 ~a~~~~~~~~~~r~ 186 (290)
+-......+.-.+.
T Consensus 83 ~r~G~shapld~r~ 96 (267)
T KOG4454|consen 83 LRCGNSHAPLDERV 96 (267)
T ss_pred cccCCCcchhhhhc
Confidence 88776555444433
No 73
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=7.1e-10 Score=100.51 Aligned_cols=83 Identities=19% Similarity=0.346 Sum_probs=76.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
.-.+|||..++++++|+||+.+|+.||+|++|.+..++ ...++||+||+|.+......||..||=+.|.|+-|+|-.+.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 46799999999999999999999999999999999999 66899999999999999999999999999999999997765
Q ss_pred CCCC
Q 022894 176 TNAE 179 (290)
Q Consensus 176 ~~~~ 179 (290)
..+.
T Consensus 289 TPP~ 292 (544)
T KOG0124|consen 289 TPPD 292 (544)
T ss_pred CCCc
Confidence 5543
No 74
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=9e-10 Score=103.29 Aligned_cols=77 Identities=30% Similarity=0.394 Sum_probs=72.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecCCC
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~~~ 178 (290)
..|||+ ++|||++|.++|+.+|+|.+|+|+.|. + +.|||||.|.++++|++||++||...|.|++|+|.|+..++
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 468998 899999999999999999999999999 5 99999999999999999999999999999999999998776
Q ss_pred CC
Q 022894 179 EI 180 (290)
Q Consensus 179 ~~ 180 (290)
..
T Consensus 77 ~~ 78 (369)
T KOG0123|consen 77 SL 78 (369)
T ss_pred ce
Confidence 53
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=4.2e-10 Score=109.42 Aligned_cols=84 Identities=24% Similarity=0.352 Sum_probs=77.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
...++|+|.|||+..+-.+|++||..||.|+.|.|+.-. .+.++|||||+|-++.+|..|+++|..+.|.|+.|.++|+
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 446899999999999999999999999999999998764 5677999999999999999999999999999999999999
Q ss_pred cCCCC
Q 022894 175 GTNAE 179 (290)
Q Consensus 175 ~~~~~ 179 (290)
.....
T Consensus 691 ~~d~~ 695 (725)
T KOG0110|consen 691 KSDNT 695 (725)
T ss_pred ccchH
Confidence 87764
No 76
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=8.1e-10 Score=96.47 Aligned_cols=83 Identities=24% Similarity=0.445 Sum_probs=75.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCce-eCC--eeeEEEE
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL-LDG--KPMKIEV 173 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~-l~G--~~i~V~~ 173 (290)
..++|||+-|...-+|||++.+|..||+|.+|.|.....+.+||||||.|.+..+|++||..|++.. +-| ..|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 5689999999999999999999999999999999999999999999999999999999999999944 434 5789999
Q ss_pred ecCCCC
Q 022894 174 VGTNAE 179 (290)
Q Consensus 174 a~~~~~ 179 (290)
+..+.+
T Consensus 98 ADTdkE 103 (371)
T KOG0146|consen 98 ADTDKE 103 (371)
T ss_pred ccchHH
Confidence 987664
No 77
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.94 E-value=4.3e-09 Score=94.96 Aligned_cols=82 Identities=28% Similarity=0.404 Sum_probs=75.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCee--------EEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELK--------RYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~--------~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 166 (290)
...++.|||+|||.++|.+++.++|++||.|. .|+|..+..|..+|-|+|+|...+++..|++.|+...|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 44678899999999999999999999999885 4888888899999999999999999999999999999999
Q ss_pred eeeEEEEecC
Q 022894 167 KPMKIEVVGT 176 (290)
Q Consensus 167 ~~i~V~~a~~ 176 (290)
+.|+|+.|+-
T Consensus 211 ~~~rVerAkf 220 (382)
T KOG1548|consen 211 KKLRVERAKF 220 (382)
T ss_pred cEEEEehhhh
Confidence 9999998863
No 78
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.90 E-value=9.6e-09 Score=87.73 Aligned_cols=83 Identities=23% Similarity=0.329 Sum_probs=70.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC--CCCCceEEEEEecCHHHHHHHHHHhCCceeC---CeeeEE
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK--NGRPSGSAEVVYARRSDAFAALKRYNNVLLD---GKPMKI 171 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~--tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~---G~~i~V 171 (290)
.-+||||.+||.+|...+|..||..|--.+.+.|.+.. ....+-+|||+|.+..+|++|+++||++.|| +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 46899999999999999999999988767766555543 2235679999999999999999999999996 678999
Q ss_pred EEecCCCC
Q 022894 172 EVVGTNAE 179 (290)
Q Consensus 172 ~~a~~~~~ 179 (290)
++++.+..
T Consensus 113 ElAKSNtK 120 (284)
T KOG1457|consen 113 ELAKSNTK 120 (284)
T ss_pred eehhcCcc
Confidence 99988764
No 79
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.88 E-value=2.4e-09 Score=97.56 Aligned_cols=86 Identities=20% Similarity=0.356 Sum_probs=78.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
...+|||+.||.++++++|+++|++||.|..+.+++|. +.++++|+||+|.+++.+++++ ...-++|+++.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeecc
Confidence 46799999999999999999999999999999999999 8999999999999999998888 557899999999999999
Q ss_pred CCCCCCcc
Q 022894 176 TNAEIPLQ 183 (290)
Q Consensus 176 ~~~~~~~~ 183 (290)
++...+..
T Consensus 175 pk~~~~~~ 182 (311)
T KOG4205|consen 175 PKEVMQST 182 (311)
T ss_pred chhhcccc
Confidence 88765443
No 80
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.87 E-value=4.5e-09 Score=92.38 Aligned_cols=81 Identities=25% Similarity=0.309 Sum_probs=76.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
...+.|||+|+.+.+|.++|+.+|+.||.|..|.|..|+ .+.+++|+||+|.+.+.++.|+. ||+..|.++.|+|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 467899999999999999999999999999999999999 77899999999999999999996 9999999999999987
Q ss_pred cCC
Q 022894 175 GTN 177 (290)
Q Consensus 175 ~~~ 177 (290)
..+
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 755
No 81
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=4.1e-09 Score=90.85 Aligned_cols=71 Identities=18% Similarity=0.306 Sum_probs=66.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
..|||++||+.+.+.||++||..||.|.+|.+. .+|+||+|.+..+|..||..||+.+|.+..+.|+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 479999999999999999999999999999887 67999999999999999999999999999988998874
No 82
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.74 E-value=1.1e-08 Score=93.02 Aligned_cols=86 Identities=23% Similarity=0.373 Sum_probs=77.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCee--------EEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeC
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELK--------RYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~--------~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 165 (290)
.....+|||.+|+..+++.+|.++|.+|+.|+ .|.|..|+ |+++|+-|.|+|+++..|++||..|++..++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45678999999999999999999999999885 36677787 9999999999999999999999999999999
Q ss_pred CeeeEEEEecCCCCC
Q 022894 166 GKPMKIEVVGTNAEI 180 (290)
Q Consensus 166 G~~i~V~~a~~~~~~ 180 (290)
+.+|+|.++...+..
T Consensus 143 gn~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 143 GNTIKVSLAERRTGV 157 (351)
T ss_pred CCCchhhhhhhccCc
Confidence 999999999877643
No 83
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.72 E-value=1.3e-07 Score=71.94 Aligned_cols=78 Identities=19% Similarity=0.212 Sum_probs=66.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhc--cCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeC----CeeeEE
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSE--IGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLD----GKPMKI 171 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~--~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~----G~~i~V 171 (290)
|||.|+|||...|.++|.+++.+ .|...-+-++.|- +..+.|||||.|.+++.|.+-.+.+++..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 79999999999999999998864 3556667777787 8889999999999999999999999998885 456677
Q ss_pred EEecC
Q 022894 172 EVVGT 176 (290)
Q Consensus 172 ~~a~~ 176 (290)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77753
No 84
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=98.69 E-value=6.5e-08 Score=69.96 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=17.5
Q ss_pred CCCCChhHHHHHHHHHHHhh
Q 022894 268 PVDKSADDLDKELDNYHAEA 287 (290)
Q Consensus 268 ~~~~~~~~ld~el~~y~~~~ 287 (290)
.+++|+||||+|||+||+.+
T Consensus 37 ~~~kT~EeLDaELD~Ym~~~ 56 (74)
T PF13865_consen 37 KPPKTAEELDAELDAYMSKT 56 (74)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 56899999999999999654
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=3.2e-08 Score=94.28 Aligned_cols=72 Identities=29% Similarity=0.297 Sum_probs=64.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~ 170 (290)
..+..+|+|-|||..|++++|..+|+.||+|+.|..... ..+.+||+|.+.-+|++|+++|+..+|.++.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345679999999999999999999999999998665543 478899999999999999999999999999888
No 86
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.57 E-value=1.4e-07 Score=92.13 Aligned_cols=84 Identities=26% Similarity=0.345 Sum_probs=75.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCC----CCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN----GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~t----g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~ 170 (290)
.+..+.|||.||++.++++.|-..|..||+|..|+|++.++ -+.+-|+||.|-+..+|++|++.|++..+....|+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45678999999999999999999999999999999999873 35567999999999999999999999999999999
Q ss_pred EEEecCCC
Q 022894 171 IEVVGTNA 178 (290)
Q Consensus 171 V~~a~~~~ 178 (290)
+-|.+.-+
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 99986443
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.52 E-value=1.2e-07 Score=82.42 Aligned_cols=82 Identities=18% Similarity=0.349 Sum_probs=75.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
+...+||.+.|..+++++.|...|.+|-.....++++|+ |++++||+||.|.+++++..|+.+||+..++.++|++..+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 456799999999999999999999999888889999999 9999999999999999999999999999999999988755
Q ss_pred cCC
Q 022894 175 GTN 177 (290)
Q Consensus 175 ~~~ 177 (290)
..+
T Consensus 268 ~wk 270 (290)
T KOG0226|consen 268 EWK 270 (290)
T ss_pred hHH
Confidence 443
No 88
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.43 E-value=8.7e-07 Score=83.58 Aligned_cols=80 Identities=23% Similarity=0.332 Sum_probs=66.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.+...-|.+..|||.+|++||.++|+.| .|+++ ++.+ +++..|-|||+|.+++++++|++ .+...+..+-|.|-.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~--~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENL--EIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEE--EEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEc
Confidence 3456788899999999999999999999 57764 3344 78999999999999999999995 577788888888877
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+....
T Consensus 83 ~~~~e 87 (510)
T KOG4211|consen 83 AGGAE 87 (510)
T ss_pred cCCcc
Confidence 65443
No 89
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.42 E-value=9.4e-07 Score=81.59 Aligned_cols=77 Identities=26% Similarity=0.370 Sum_probs=70.3
Q ss_pred CCEEEEeCCC-CCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022894 98 GTKLYVSNLH-PGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 98 ~~~l~V~nL~-~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
++.|.|.||. +.||.+-|..||..||+|.+|+|++++ +--|+|.|.+...|+-|++.|+++.|.|++|+|.+++-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 6889999996 469999999999999999999999986 45699999999999999999999999999999999876
Q ss_pred CC
Q 022894 177 NA 178 (290)
Q Consensus 177 ~~ 178 (290)
..
T Consensus 373 ~~ 374 (492)
T KOG1190|consen 373 TN 374 (492)
T ss_pred cc
Confidence 54
No 90
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.37 E-value=1.8e-06 Score=63.15 Aligned_cols=69 Identities=23% Similarity=0.289 Sum_probs=48.3
Q ss_pred CEEEEeCCCCCCCHHH----HHHHHhccC-CeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 99 TKLYVSNLHPGVTNDD----IRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 99 ~~l~V~nL~~~~te~d----L~~~F~~~G-~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
+.|||.|||.+..... |+.|+..|| .|..| . .+.|+|.|.+++.|..|.+.|++..+.|++|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 5799999999888765 667787876 55543 2 46899999999999999999999999999999998
Q ss_pred ecC
Q 022894 174 VGT 176 (290)
Q Consensus 174 a~~ 176 (290)
...
T Consensus 74 ~~~ 76 (90)
T PF11608_consen 74 SPK 76 (90)
T ss_dssp S--
T ss_pred cCC
Confidence 743
No 91
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.33 E-value=1.2e-06 Score=82.66 Aligned_cols=79 Identities=22% Similarity=0.300 Sum_probs=66.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeE-EEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~-v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
.....|.+..||+.||++||.++|+-.-.|.. |.++.+..+++.|-|||.|++.+.|++|+.. |...|..+-|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 46779999999999999999999998855554 5567777888999999999999999999954 778888888888655
Q ss_pred c
Q 022894 175 G 175 (290)
Q Consensus 175 ~ 175 (290)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 3
No 92
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.32 E-value=5.2e-07 Score=86.60 Aligned_cols=83 Identities=25% Similarity=0.353 Sum_probs=77.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
....+|||++||..+++.++.|+...||+++...++.|. ++.+++|||.+|.++.....|+..||+..+.+++|.|+.|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 345689999999999999999999999999999999998 8999999999999999999999999999999999999988
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
....
T Consensus 367 ~~g~ 370 (500)
T KOG0120|consen 367 IVGA 370 (500)
T ss_pred hccc
Confidence 6654
No 93
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.31 E-value=9.4e-06 Score=67.80 Aligned_cols=64 Identities=22% Similarity=0.348 Sum_probs=57.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 166 (290)
....|.|+.||...+++||+++..+.|.|....+..| +++.|+|...|+.+-||.+|+...+.-
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhccccccC
Confidence 4678999999999999999999999999998888865 489999999999999999998877653
No 94
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.29 E-value=1.7e-06 Score=66.99 Aligned_cols=73 Identities=26% Similarity=0.377 Sum_probs=45.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCc-----eeCCeeeEEE
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV-----LLDGKPMKIE 172 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~-----~l~G~~i~V~ 172 (290)
++.|+|.+++..++.++|+++|+.|+.|..|.+... .-.|||-|.++++|++|++.+... .|.+..++++
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 367999999999999999999999999999888743 337999999999999999877544 6677777776
Q ss_pred Eec
Q 022894 173 VVG 175 (290)
Q Consensus 173 ~a~ 175 (290)
+..
T Consensus 76 vLe 78 (105)
T PF08777_consen 76 VLE 78 (105)
T ss_dssp ---
T ss_pred ECC
Confidence 543
No 95
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.22 E-value=7.8e-07 Score=76.82 Aligned_cols=73 Identities=25% Similarity=0.339 Sum_probs=65.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
....+.|+|.||+..+++.+|+++|..+|++..+.+. .+++||+|.+.++|..|++.|++..|.++.|+|...
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 4578999999999999999999999999999655443 568999999999999999999999999999999433
No 96
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.20 E-value=6.1e-06 Score=70.93 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=69.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC-CeeeEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIE 172 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~-G~~i~V~ 172 (290)
..++...||+.|||..++.+.|..+|.+|.-.+.|.++... ++.|||+|.+...|..|...+++..|- ...|.|.
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 35678999999999999999999999999999999888654 679999999999999999999998886 7788888
Q ss_pred Eec
Q 022894 173 VVG 175 (290)
Q Consensus 173 ~a~ 175 (290)
+++
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 764
No 97
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.16 E-value=4e-06 Score=76.10 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=66.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccC--CeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIG--ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G--~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
..+||+||-|++|++||.+.+...| .|.++++..++ +|.+||||+|...+....++.++.|...+|.|+.-.|.-.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 3689999999999999998887665 55677788888 8999999999999999999999999999999987666543
No 98
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.16 E-value=6.5e-07 Score=85.38 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=73.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
...+||+..|+..+++-||.++|+.+|+|..|.|+.|+ +..++|.|||+|.+.+.+..|| .|.|..+.|.+|.|+...
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccH
Confidence 34689999999999999999999999999999999999 9999999999999999999999 899999999999998764
No 99
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.16 E-value=2.5e-06 Score=73.14 Aligned_cols=68 Identities=24% Similarity=0.394 Sum_probs=55.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCcee
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL 164 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l 164 (290)
......||||-||..+|+|++|+.+|+.|--...++|. .+.| -..|||+|++.+.|..|+..|++..|
T Consensus 206 ~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~~~g--~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 206 GARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR-ARGG--MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred cchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-cCCC--cceEeecHHHHHHHHHHHHHhhccee
Confidence 34456799999999999999999999999776665554 3333 34799999999999999999988776
No 100
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.11 E-value=3.3e-05 Score=75.77 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=68.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCee-EEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELK-RYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~-~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.+.|-+.|+|++|+-+||-++|..|-.+- +|.+.++..|...|-|.|.|++.++|.+|+..|++..|..++|+|.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34889999999999999999999996554 67788888999999999999999999999999999999999998875
No 101
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.94 E-value=6.8e-05 Score=68.86 Aligned_cols=86 Identities=26% Similarity=0.306 Sum_probs=74.6
Q ss_pred CCCCCCCEEEEeCCCCC-CCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 93 SGIEVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 93 ~~~~~~~~l~V~nL~~~-~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
..-.+++.+.|.+|+.. ++-+.|..||-.||.|.+|+++..+ .+.|.|++-+..+.+.||..||+..+-|.+|.|
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 34567899999999875 5567799999999999999999765 568999999999999999999999999999999
Q ss_pred EEecCCCCCCc
Q 022894 172 EVVGTNAEIPL 182 (290)
Q Consensus 172 ~~a~~~~~~~~ 182 (290)
.+++.....+.
T Consensus 358 ~~SkQ~~v~~~ 368 (494)
T KOG1456|consen 358 CVSKQNFVSPV 368 (494)
T ss_pred eeccccccccC
Confidence 99887664443
No 102
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.93 E-value=5.7e-06 Score=75.11 Aligned_cols=81 Identities=23% Similarity=0.405 Sum_probs=72.3
Q ss_pred CCCEEE-EeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 97 VGTKLY-VSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 97 ~~~~l~-V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
...++| |.||++.+++++|+++|..++.|..+.+..++ ++.+++|+||+|.+...+..|+.. +...+.+.++.|+..
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 344555 99999999999999999999999999999988 999999999999999999999977 889999999999877
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.+.+
T Consensus 262 ~~~~ 265 (285)
T KOG4210|consen 262 EPRP 265 (285)
T ss_pred CCCc
Confidence 6554
No 103
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.90 E-value=6.4e-05 Score=68.36 Aligned_cols=79 Identities=14% Similarity=0.355 Sum_probs=63.9
Q ss_pred CCCCCEEEEeCCC----CCCC-------HHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCce
Q 022894 95 IEVGTKLYVSNLH----PGVT-------NDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL 163 (290)
Q Consensus 95 ~~~~~~l~V~nL~----~~~t-------e~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~ 163 (290)
....++|.|+||- +..+ .+||.+-.++||.|.+|.|. ++ .+.|.+.|.|.+.++|..||+.|++..
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d~--hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-DR--HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-cc--CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3456899999982 2334 24566678899999998765 32 568899999999999999999999999
Q ss_pred eCCeeeEEEEecC
Q 022894 164 LDGKPMKIEVVGT 176 (290)
Q Consensus 164 l~G~~i~V~~a~~ 176 (290)
|+|+.|..++...
T Consensus 339 fdgRql~A~i~DG 351 (382)
T KOG1548|consen 339 FDGRQLTASIWDG 351 (382)
T ss_pred ecceEEEEEEeCC
Confidence 9999999887653
No 104
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.87 E-value=3.4e-05 Score=71.54 Aligned_cols=79 Identities=22% Similarity=0.316 Sum_probs=67.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCe-eeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK-PMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~-~i~V~~a 174 (290)
+++.+|++.|||..++||+|+++|.+-|-..+...... +.+-+|++.+.+.|+|..|+..++++.+... -|+|.|+
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 57889999999999999999999999887766555443 2345999999999999999999999999766 7899998
Q ss_pred cCC
Q 022894 175 GTN 177 (290)
Q Consensus 175 ~~~ 177 (290)
+..
T Consensus 489 ks~ 491 (492)
T KOG1190|consen 489 KST 491 (492)
T ss_pred ccc
Confidence 753
No 105
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.00012 Score=70.39 Aligned_cols=79 Identities=22% Similarity=0.248 Sum_probs=64.4
Q ss_pred CCCCEEEEeCCCCCCCH------HHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC-Cee
Q 022894 96 EVGTKLYVSNLHPGVTN------DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKP 168 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te------~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~-G~~ 168 (290)
--.+.|+|-|+|---.. .-|..+|+++|+|..+.+..+..+.++||.|++|.+..+|+.|++.||++.|+ .+.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 34578999999853222 23568899999999999998886679999999999999999999999999987 456
Q ss_pred eEEEEe
Q 022894 169 MKIEVV 174 (290)
Q Consensus 169 i~V~~a 174 (290)
+.|.+.
T Consensus 136 f~v~~f 141 (698)
T KOG2314|consen 136 FFVRLF 141 (698)
T ss_pred EEeehh
Confidence 676554
No 106
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.76 E-value=6.2e-05 Score=68.24 Aligned_cols=79 Identities=22% Similarity=0.432 Sum_probs=62.4
Q ss_pred CCEEEEeCCCCCCCHHH----H--HHHHhccCCeeEEEEEeCC-CCC-CceE--EEEEecCHHHHHHHHHHhCCceeCCe
Q 022894 98 GTKLYVSNLHPGVTNDD----I--RELFSEIGELKRYAIHFDK-NGR-PSGS--AEVVYARRSDAFAALKRYNNVLLDGK 167 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~d----L--~~~F~~~G~i~~v~i~~d~-tg~-~kG~--afV~F~~~~~A~~Ai~~lng~~l~G~ 167 (290)
-.-+||-.|++.+..|+ | .++|.+||.|++|.|.... +-. ..+. .||+|.+.++|..||.+.++..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35678999998887776 3 4889999999988776543 111 1122 39999999999999999999999999
Q ss_pred eeEEEEecC
Q 022894 168 PMKIEVVGT 176 (290)
Q Consensus 168 ~i~V~~a~~ 176 (290)
.|+..+-..
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999887654
No 107
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.72 E-value=2e-05 Score=73.34 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=62.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeC---C-C--CC--------CceEEEEEecCHHHHHHHHHHhCCc
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD---K-N--GR--------PSGSAEVVYARRSDAFAALKRYNNV 162 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d---~-t--g~--------~kG~afV~F~~~~~A~~Ai~~lng~ 162 (290)
++.+|.+.|||.+-.-+.|.+||..||.|+.|+|+.. + + +. .+-+|+|+|+..+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6789999999999999999999999999999999876 2 1 11 2568999999999999999888765
Q ss_pred eeCCeeeEEEE
Q 022894 163 LLDGKPMKIEV 173 (290)
Q Consensus 163 ~l~G~~i~V~~ 173 (290)
...-.-|+|.+
T Consensus 310 ~~wr~glkvkL 320 (484)
T KOG1855|consen 310 QNWRMGLKVKL 320 (484)
T ss_pred hhhhhcchhhh
Confidence 54444444444
No 108
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.65 E-value=0.00026 Score=57.46 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=52.2
Q ss_pred CCCEEEEeCCC------CCCCH---HHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCe
Q 022894 97 VGTKLYVSNLH------PGVTN---DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK 167 (290)
Q Consensus 97 ~~~~l~V~nL~------~~~te---~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~ 167 (290)
+..||.|+=+. ..+.+ .+|-+.|..||+|.-|++.-+ .-+|+|.+-+.|.+|+ .|++.+|+|+
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaal-s~dg~~v~g~ 97 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAAL-SLDGIQVNGR 97 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHH-HGCCSEETTE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHH-ccCCcEECCE
Confidence 55666665444 12332 256677899999998888743 5899999999999999 7899999999
Q ss_pred eeEEEEecCCCCC
Q 022894 168 PMKIEVVGTNAEI 180 (290)
Q Consensus 168 ~i~V~~a~~~~~~ 180 (290)
.|+|.+..++...
T Consensus 98 ~l~i~LKtpdW~~ 110 (146)
T PF08952_consen 98 TLKIRLKTPDWLK 110 (146)
T ss_dssp EEEEEE-------
T ss_pred EEEEEeCCccHHH
Confidence 9999999888753
No 109
>PF07078 FYTT: Forty-two-three protein; InterPro: IPR009782 This family consists of several hypothetical mammalian proteins of around 320 residues in length. The function of this family is unknown although several of the family members are annotated as putative 40-2-3 proteins.
Probab=97.64 E-value=1.7e-05 Score=70.70 Aligned_cols=19 Identities=58% Similarity=0.786 Sum_probs=16.7
Q ss_pred CCCCCCCHHHHHHhccCCC
Q 022894 2 ATHVDMSLDDIIKSRKKSE 20 (290)
Q Consensus 2 ~~~ld~slddii~~~~~~~ 20 (290)
.||||||||||||-|||-.
T Consensus 26 ~DKIDMSLDDIIKLNKKE~ 44 (316)
T PF07078_consen 26 LDKIDMSLDDIIKLNKKEQ 44 (316)
T ss_pred cccccccHHHHHHhhhhhh
Confidence 4999999999999997763
No 110
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.60 E-value=0.00018 Score=48.58 Aligned_cols=52 Identities=27% Similarity=0.385 Sum_probs=41.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHH
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 156 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai 156 (290)
+.|-|.+.+.+..+. |..+|.+||+|.++.+. ....+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-----CCCcEEEEEECCHHHHHhhC
Confidence 578899998776644 55589999999987776 22458999999999999985
No 111
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.50 E-value=4.9e-05 Score=66.62 Aligned_cols=65 Identities=23% Similarity=0.348 Sum_probs=54.0
Q ss_pred HHHHHHh-ccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecCCC
Q 022894 114 DIRELFS-EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (290)
Q Consensus 114 dL~~~F~-~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~~~ 178 (290)
||...|+ +||+|+++.|..+..-.-.|-+||.|...++|++|++.||+-.+.|++|..+++....
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 3334444 8999999888766655667889999999999999999999999999999999875443
No 112
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.45 E-value=0.00083 Score=61.89 Aligned_cols=81 Identities=21% Similarity=0.142 Sum_probs=64.9
Q ss_pred CCCCCCEEEEe--CCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC--Ceee
Q 022894 94 GIEVGTKLYVS--NLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD--GKPM 169 (290)
Q Consensus 94 ~~~~~~~l~V~--nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~--G~~i 169 (290)
+..+++.|.+. |--+.+|.+-|..+....|+|.+|.|+.. ++ -.|.|||++.+.|++|.+.||+..|. -..|
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cc---eeeEEeechhHHHHHHHhhcccccccccceeE
Confidence 34445555444 55567899999999999999999988753 33 36999999999999999999999885 3589
Q ss_pred EEEEecCCC
Q 022894 170 KIEVVGTNA 178 (290)
Q Consensus 170 ~V~~a~~~~ 178 (290)
+|++|++..
T Consensus 192 KIeyAkP~r 200 (494)
T KOG1456|consen 192 KIEYAKPTR 200 (494)
T ss_pred EEEecCcce
Confidence 999998765
No 113
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.44 E-value=5.1e-05 Score=76.00 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=74.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecCC
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~~ 177 (290)
..+|+|.|+|+..|.++|+.+|..+|.++++.++..+.++++|.|||.|.++.++..++...+...+.-..+.|.++.+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 45899999999999999999999999999999999999999999999999999999999998888888888999887764
Q ss_pred C
Q 022894 178 A 178 (290)
Q Consensus 178 ~ 178 (290)
.
T Consensus 816 ~ 816 (881)
T KOG0128|consen 816 R 816 (881)
T ss_pred c
Confidence 4
No 114
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.43 E-value=0.00021 Score=65.91 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=66.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCee-E--EEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELK-R--YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~-~--v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
+...|.+.+||+..+.+||-.+|..|-.-+ . |.++.+..|++.|-|||+|.+.|+|.+|....+++..+.+-|.|-.
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 345799999999999999999999886433 3 7788888999999999999999999999999888887788888755
Q ss_pred e
Q 022894 174 V 174 (290)
Q Consensus 174 a 174 (290)
+
T Consensus 359 ~ 359 (508)
T KOG1365|consen 359 C 359 (508)
T ss_pred c
Confidence 4
No 115
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00043 Score=66.14 Aligned_cols=68 Identities=16% Similarity=0.278 Sum_probs=62.0
Q ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHh-ccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHH
Q 022894 91 GISGIEVGTKLYVSNLHPGVTNDDIRELFS-EIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKR 158 (290)
Q Consensus 91 ~~~~~~~~~~l~V~nL~~~~te~dL~~~F~-~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~ 158 (290)
...++++.+||||+.||--++.++|..+|+ .||.|..+-|-.|+ -..++|-+-|+|.+..+-.+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 345678899999999999999999999998 89999999999995 788999999999999999999964
No 116
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.34 E-value=0.00019 Score=69.41 Aligned_cols=79 Identities=22% Similarity=0.289 Sum_probs=64.4
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHh-ccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCcee---CCeee
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFS-EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL---DGKPM 169 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~-~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l---~G~~i 169 (290)
.-..++.|||.||-.-+|.-+|++|+. .+|.|... ..| +.|-.|||.|.+.++|.+.+.+||++.+ +.+.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH---HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 456678999999998899999999998 66677665 233 3356799999999999999999999887 56778
Q ss_pred EEEEecCC
Q 022894 170 KIEVVGTN 177 (290)
Q Consensus 170 ~V~~a~~~ 177 (290)
.|.|+...
T Consensus 515 ~adf~~~d 522 (718)
T KOG2416|consen 515 IADFVRAD 522 (718)
T ss_pred Eeeecchh
Confidence 88887544
No 117
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.33 E-value=0.00052 Score=66.31 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=52.3
Q ss_pred HHHHHhccCCeeEEEEEeC-CC---CCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecCC
Q 022894 115 IRELFSEIGELKRYAIHFD-KN---GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (290)
Q Consensus 115 L~~~F~~~G~i~~v~i~~d-~t---g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~~ 177 (290)
|+.-++.||.|..|.|..+ .. .-..|..||+|.+.++++.|+++|+|.+|.++.|...+..+.
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 4445678999999999887 32 234567899999999999999999999999999999887543
No 118
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.31 E-value=0.00024 Score=62.24 Aligned_cols=72 Identities=24% Similarity=0.309 Sum_probs=60.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-C--------CCCce----EEEEEecCHHHHHHHHHHhCCce
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N--------GRPSG----SAEVVYARRSDAFAALKRYNNVL 163 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-t--------g~~kG----~afV~F~~~~~A~~Ai~~lng~~ 163 (290)
..-.||++|||+.+....|+++|++||.|-.|.|.... + +.+.. -++|+|.+...|..+.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 34589999999999999999999999999998887654 3 22221 35799999999999999999999
Q ss_pred eCCee
Q 022894 164 LDGKP 168 (290)
Q Consensus 164 l~G~~ 168 (290)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98874
No 119
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.30 E-value=0.0004 Score=64.26 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=61.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC----CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK----NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~----tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
...|.|.||.+.+|.++++.||..+|.|..+.|+.+. -....-+|||.|.+...+..|. .|.++.|-++.|.|-.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 3489999999999999999999999999999887643 2244569999999998888877 6777777777666654
Q ss_pred e
Q 022894 174 V 174 (290)
Q Consensus 174 a 174 (290)
+
T Consensus 86 ~ 86 (479)
T KOG4676|consen 86 Y 86 (479)
T ss_pred c
Confidence 4
No 120
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.09 E-value=0.0034 Score=43.60 Aligned_cols=55 Identities=25% Similarity=0.282 Sum_probs=45.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcc---CCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHh
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEI---GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 159 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~---G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~l 159 (290)
..+|+|.+|+ +++.+||+.+|..| .....|.++-|. .|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 4689999997 47889999999988 234578888775 4899999999999999764
No 121
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.04 E-value=0.0037 Score=47.83 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=51.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEE-EEeC-------CCCCCceEEEEEecCHHHHHHHHHHhCCceeCCee
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYA-IHFD-------KNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP 168 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~-i~~d-------~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~ 168 (290)
..+-|.|-+.|+. ....|-++|++||+|.+.. +..+ +.-....+..|+|+++.+|++|| ..|+..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 3566888899987 5567788999999998654 1110 11123458899999999999999 56999999876
Q ss_pred eE-EEEec
Q 022894 169 MK-IEVVG 175 (290)
Q Consensus 169 i~-V~~a~ 175 (290)
|. |.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 54 66553
No 122
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.02 E-value=0.0033 Score=46.11 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=44.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN 161 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng 161 (290)
......||. +|......||.+||+.||.|. |..+.|. .|||...+.+.|..|+..+.-
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT------EEEEEECCCHHHHHHHHHHTT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC------cEEEEeecHHHHHHHHHHhcc
Confidence 345677777 999999999999999999886 5555443 699999999999999988763
No 123
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0024 Score=61.17 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=48.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC----CCCCce---EEEEEecCHHHHHHHHHHh
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK----NGRPSG---SAEVVYARRSDAFAALKRY 159 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~----tg~~kG---~afV~F~~~~~A~~Ai~~l 159 (290)
.-+.+|||+.||++++|+.|...|..||.+. |.+.... --.++| |+|+.|+++..+.+-|.+.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 3467999999999999999999999999875 3333211 123567 9999999998887766654
No 124
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.92 E-value=0.00085 Score=62.69 Aligned_cols=75 Identities=28% Similarity=0.298 Sum_probs=59.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCC-ceeCCeeeEEEEecCC
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN-VLLDGKPMKIEVVGTN 177 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng-~~l~G~~i~V~~a~~~ 177 (290)
++|||.||.+.++.+||+.+|...-.-.+-.++ ...+|+||.+.+...|.+|++.+++ .++.|+.+.|+..-++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl-----~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL-----VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee-----eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 479999999999999999999754111111111 1268999999999999999999998 6789999999887655
Q ss_pred C
Q 022894 178 A 178 (290)
Q Consensus 178 ~ 178 (290)
.
T Consensus 77 k 77 (584)
T KOG2193|consen 77 K 77 (584)
T ss_pred H
Confidence 4
No 125
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.88 E-value=0.00072 Score=66.67 Aligned_cols=78 Identities=12% Similarity=0.062 Sum_probs=66.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeE-EEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~-v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
+.+..|||..||..+++.++-++|...-.|++ |.|.+-++++-.+.|||+|.+++++.+|...-+.+.+..+.|.|.-
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 45679999999999999999999988777776 7777777888899999999999998888877777777778888854
No 126
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.82 E-value=0.004 Score=55.80 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=52.5
Q ss_pred HHHHHHHhccCCeeEEEEEeCCCC-C-CceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 113 DDIRELFSEIGELKRYAIHFDKNG-R-PSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 113 ~dL~~~F~~~G~i~~v~i~~d~tg-~-~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
+++++.+++||.|..|.|+.+++- . -.--.||+|...++|.+|+-.||+..|.|+.+...|..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 467888999999999999887621 1 12246999999999999999999999999999888764
No 127
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.72 E-value=0.0063 Score=56.40 Aligned_cols=73 Identities=23% Similarity=0.314 Sum_probs=56.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhcc----CCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEI----GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~----G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
--.|.+.+||+++++.|+.++|..- +.++.|-++...+++..|-|||.|..+++|+.|+.+ |...|.-+-|.|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 3467788999999999999999632 234456666666899999999999999999999965 545555555544
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.71 E-value=8.3e-05 Score=74.53 Aligned_cols=69 Identities=29% Similarity=0.384 Sum_probs=58.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeC
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 165 (290)
..+++||+||+..+.++||...|..++.|..+.+.... +++.+|+|||+|..++++.+||.....+.+.
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 45789999999999999999999999988887776455 7889999999999999999999655554444
No 129
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.66 E-value=0.002 Score=56.60 Aligned_cols=76 Identities=29% Similarity=0.543 Sum_probs=63.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCc----eeCCeeeEEEEe
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV----LLDGKPMKIEVV 174 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~----~l~G~~i~V~~a 174 (290)
..|||.||...++.+.|.+.|+.||+|....++.|..+++.+-.+|.|.....|.+|+..++.- ++.+.+.-|+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 7899999999999999999999999999888888888888888999999999999999887442 334555555543
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.49 E-value=0.004 Score=63.20 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=70.2
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC--eeeEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG--KPMKI 171 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G--~~i~V 171 (290)
.....+.|+|+.|..++....|...|..||.|..|.+-. ..-||+|.|++...|++|+..|-+..|.+ +.|.|
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----CCcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 345678999999999999999999999999999766542 34599999999999999999999999975 67999
Q ss_pred EEecCCCCC
Q 022894 172 EVVGTNAEI 180 (290)
Q Consensus 172 ~~a~~~~~~ 180 (290)
.|+.+....
T Consensus 526 dla~~~~~~ 534 (975)
T KOG0112|consen 526 DLASPPGAT 534 (975)
T ss_pred ccccCCCCC
Confidence 998766543
No 131
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.18 E-value=0.0082 Score=50.76 Aligned_cols=79 Identities=18% Similarity=0.287 Sum_probs=50.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhc-cCCe---eEEEEEeCC--C-CCCceEEEEEecCHHHHHHHHHHhCCceeCCe--
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSE-IGEL---KRYAIHFDK--N-GRPSGSAEVVYARRSDAFAALKRYNNVLLDGK-- 167 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~-~G~i---~~v~i~~d~--t-g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~-- 167 (290)
..++|.|++||+++|++++.+.+.. ++.. ..+.-.... . -....-|||.|.+.+++..-++.++++.|.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4679999999999999999987665 5544 333322332 1 12245699999999999999999999877432
Q ss_pred ---eeEEEEec
Q 022894 168 ---PMKIEVVG 175 (290)
Q Consensus 168 ---~i~V~~a~ 175 (290)
...|++|-
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 34566654
No 132
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.95 E-value=0.0023 Score=58.37 Aligned_cols=80 Identities=19% Similarity=0.339 Sum_probs=62.4
Q ss_pred CEEEEeCCCCCCCHHHH-H--HHHhccCCeeEEEEEeCCC----CCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 99 TKLYVSNLHPGVTNDDI-R--ELFSEIGELKRYAIHFDKN----GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL-~--~~F~~~G~i~~v~i~~d~t----g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
.-+||-.|+..+..+++ + +.|.+||.|.+|.+..+.+ -....-++|+|...++|..||...+++.++++.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45678888877665554 3 6799999999998887652 122334899999999999999999999999999888
Q ss_pred EEecCCC
Q 022894 172 EVVGTNA 178 (290)
Q Consensus 172 ~~a~~~~ 178 (290)
.+...+.
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 7766554
No 133
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.89 E-value=0.012 Score=56.93 Aligned_cols=72 Identities=13% Similarity=0.225 Sum_probs=57.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHh--ccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCC--ceeCCeeeEE
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFS--EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKI 171 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~--~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng--~~l~G~~i~V 171 (290)
..-|.|.|.-||..+-+|+|+.||. .|-++++|.+-.+. -=||+|++..||+.|.+.|.. ++|.|++|..
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3457889999999999999999996 57788888877553 249999999999999987755 6677887754
Q ss_pred EE
Q 022894 172 EV 173 (290)
Q Consensus 172 ~~ 173 (290)
.+
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 43
No 134
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=95.88 E-value=0.019 Score=41.38 Aligned_cols=17 Identities=41% Similarity=0.690 Sum_probs=15.2
Q ss_pred CChhHHHHHHHHHHHhh
Q 022894 271 KSADDLDKELDNYHAEA 287 (290)
Q Consensus 271 ~~~~~ld~el~~y~~~~ 287 (290)
.+.+.||+|||+||+++
T Consensus 55 ~~~~~LD~~Ld~Y~~~~ 71 (74)
T PF13865_consen 55 KTKSKLDAELDSYMSKK 71 (74)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 67789999999999976
No 135
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.79 E-value=0.046 Score=44.23 Aligned_cols=72 Identities=17% Similarity=0.238 Sum_probs=52.4
Q ss_pred CCCCEEEEeCCCCCCC-HHHHH---HHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 96 EVGTKLYVSNLHPGVT-NDDIR---ELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~t-e~dL~---~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
++-.+|.|.=|..++. .+||+ ..++.||+|.+|.+. .+-.|.|+|.+..+|-+|+.+++. ..-|..+.+
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec------CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 4567888876655543 34555 446899999999876 244799999999999999999876 445555665
Q ss_pred EEe
Q 022894 172 EVV 174 (290)
Q Consensus 172 ~~a 174 (290)
.|-
T Consensus 157 sWq 159 (166)
T PF15023_consen 157 SWQ 159 (166)
T ss_pred ecc
Confidence 553
No 136
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.75 E-value=0.055 Score=38.88 Aligned_cols=66 Identities=23% Similarity=0.313 Sum_probs=39.0
Q ss_pred EEEEeCC--CCCCCHHHHHHHHhccCC-----eeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 100 KLYVSNL--HPGVTNDDIRELFSEIGE-----LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 100 ~l~V~nL--~~~~te~dL~~~F~~~G~-----i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
+||| |+ -..++..+|..++..... |-.|.|. .-|+||+-.. +.|+.+++.|++..+.|++|+|+
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE--------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 4555 33 346788899888876644 4467776 3389999875 48899999999999999999998
Q ss_pred Ee
Q 022894 173 VV 174 (290)
Q Consensus 173 ~a 174 (290)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 137
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.68 E-value=0.04 Score=46.91 Aligned_cols=63 Identities=16% Similarity=0.224 Sum_probs=47.0
Q ss_pred CHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhC--CceeCCeeeEEEEecCCC
Q 022894 111 TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN--NVLLDGKPMKIEVVGTNA 178 (290)
Q Consensus 111 te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln--g~~l~G~~i~V~~a~~~~ 178 (290)
..+.|+++|..|..+..+.++ ++..-..|.|.+.++|.+|...|+ +..+.+..|+|.++....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L-----~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL-----KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE-----TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEc-----CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 457899999999999887776 345578999999999999999999 899999999999985443
No 138
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.50 E-value=0.01 Score=56.45 Aligned_cols=74 Identities=20% Similarity=0.306 Sum_probs=58.6
Q ss_pred CEEEEeCCCCCC-CHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecCC
Q 022894 99 TKLYVSNLHPGV-TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (290)
Q Consensus 99 ~~l~V~nL~~~~-te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~~ 177 (290)
+.|-+.-+++.. +.++|..+|.+||+|..|.|-+. .-.|.|+|.+..+|-.|. +.+...|+++.|+|.|-++.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchh-ccccceecCceeEEEEecCC
Confidence 334444445443 46889999999999999988765 236999999999997776 67899999999999999885
Q ss_pred C
Q 022894 178 A 178 (290)
Q Consensus 178 ~ 178 (290)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 4
No 139
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.29 E-value=0.0073 Score=61.35 Aligned_cols=80 Identities=20% Similarity=0.214 Sum_probs=66.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
...+.+||++||+..+++.+|+..|..+|.|.+|.|....-+.-.-|+||.|.+...+..|+..+.+..|.--.+++-+-
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 34567999999999999999999999999999999887653344458999999999999999999887776555555554
No 140
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.71 E-value=0.043 Score=53.21 Aligned_cols=83 Identities=16% Similarity=0.073 Sum_probs=57.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-hccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeC----Ceee
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELF-SEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLD----GKPM 169 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F-~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~----G~~i 169 (290)
..-+++.|+|++...|...|.+.- ...+.-..+.+..|- +....|||||.|.+++++..+.+++|++.++ .+.+
T Consensus 386 ~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia 465 (549)
T KOG4660|consen 386 CPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIA 465 (549)
T ss_pred CchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeee
Confidence 345666677776655544443332 235555566666665 6778999999999999999999999997753 3445
Q ss_pred EEEEecCCC
Q 022894 170 KIEVVGTNA 178 (290)
Q Consensus 170 ~V~~a~~~~ 178 (290)
.|.||.-+.
T Consensus 466 ~itYArIQG 474 (549)
T KOG4660|consen 466 SITYARIQG 474 (549)
T ss_pred eeehhhhhc
Confidence 677765544
No 141
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.59 E-value=0.18 Score=35.50 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 109 GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 109 ~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
.++-+||+..+..|. .. +|..|++ || ||.|.+.++|++|....++..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~--~I~~d~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WD--RIRDDRT----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cc--eEEecCC----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 467899999999995 33 3445553 33 89999999999999999999888877665
No 142
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.55 E-value=0.025 Score=55.88 Aligned_cols=72 Identities=10% Similarity=0.158 Sum_probs=63.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
+.++..+|||+||...|+++-++.+...||.|..+... + |+|++|..+..+..|+..++-..++++.+.+..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~-------~-fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD-------K-FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh-------h-hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 45678899999999999999999999999999877655 2 999999999999999999999999998876654
No 143
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.34 E-value=0.47 Score=36.90 Aligned_cols=68 Identities=9% Similarity=-0.009 Sum_probs=49.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccC-CeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G-~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 166 (290)
...+.+-..|+.++.++|..+.+.+- .|..++|++|.+. ++-.+++.|.+.++|..-.+.+||+.++-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444545566666677776666554 4567888887643 46688999999999999999999988864
No 144
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.83 E-value=0.03 Score=50.99 Aligned_cols=81 Identities=20% Similarity=0.233 Sum_probs=66.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
...+++||+++.+.+.+.++..+|..+|.+..+.+.... ...++++++|.|...+.+..|+.......+....+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 357899999999999999999999999988877766655 7788999999999999999999766556766666655554
Q ss_pred cC
Q 022894 175 GT 176 (290)
Q Consensus 175 ~~ 176 (290)
..
T Consensus 166 ~~ 167 (285)
T KOG4210|consen 166 TR 167 (285)
T ss_pred cc
Confidence 43
No 145
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=93.52 E-value=1.4 Score=44.72 Aligned_cols=67 Identities=13% Similarity=0.311 Sum_probs=49.9
Q ss_pred EEEEeCC--CCCCCHHHHHHHHhccCCee-----EEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 100 KLYVSNL--HPGVTNDDIRELFSEIGELK-----RYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 100 ~l~V~nL--~~~~te~dL~~~F~~~G~i~-----~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
++|| |+ ...++..+|-.++..-+.|. .|.|. ..|.||+... +.|...++.|++..+.++.|.|+
T Consensus 488 ~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-------~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 488 LYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF-------ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe-------CCceEEEcCh-hhHHHHHHHhccccccCCceEEE
Confidence 4554 44 45688888888776555443 46665 3388999874 56889999999999999999999
Q ss_pred Eec
Q 022894 173 VVG 175 (290)
Q Consensus 173 ~a~ 175 (290)
.+.
T Consensus 559 ~~~ 561 (629)
T PRK11634 559 LLG 561 (629)
T ss_pred ECC
Confidence 875
No 146
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.36 E-value=0.057 Score=54.79 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=60.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCcee--CCeeeEEEEecCC
Q 022894 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL--DGKPMKIEVVGTN 177 (290)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l--~G~~i~V~~a~~~ 177 (290)
+.++.|.+-..+...|..||..||.|.++..+++ ...|.|+|.+.+.|..|+++|++.++ .|-+.+|.+++.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3444555556777889999999999999888765 55899999999999999999999776 5778899988765
Q ss_pred C
Q 022894 178 A 178 (290)
Q Consensus 178 ~ 178 (290)
+
T Consensus 375 ~ 375 (1007)
T KOG4574|consen 375 P 375 (1007)
T ss_pred c
Confidence 5
No 147
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.09 E-value=0.69 Score=45.41 Aligned_cols=79 Identities=20% Similarity=0.180 Sum_probs=61.6
Q ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHhcc----CCeeEEEEEeCCCC-----------C---------------------
Q 022894 95 IEVGTKLYVSNLHPG-VTNDDIRELFSEI----GELKRYAIHFDKNG-----------R--------------------- 137 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~-~te~dL~~~F~~~----G~i~~v~i~~d~tg-----------~--------------------- 137 (290)
-..++.|-|-||+|. |...||.-+|..| |.|.+|.|....-| .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999996 7889999999876 57888887654211 1
Q ss_pred ----------------CceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 138 ----------------PSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 138 ----------------~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.-=||.|+|.+.+.|.+..+.++|++|...-+.+.|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 123899999999999999999999999766555554
No 148
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.04 E-value=0.57 Score=42.49 Aligned_cols=68 Identities=26% Similarity=0.362 Sum_probs=48.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeee-EEEE
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM-KIEV 173 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i-~V~~ 173 (290)
+=|-|-++++.- -.-|-.+|+.||+|++.... . .-.+-+|-|.+..+|++||. .|+..|++..| -|..
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~--~---ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP--S---NGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKP 266 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecC--C---CCceEEEEecchhHHHHhhh-hcCeeeccceEEeeee
Confidence 345555666543 34567889999999865433 2 23488999999999999994 59999998764 3444
No 149
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.04 E-value=0.92 Score=43.30 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=58.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc-CCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEI-GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~-G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 166 (290)
+++.|+|--+|..+|-.||-.|...| -.|.+++|++|.... +=.++|.|.+.++|....+.|||..|+-
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn-rymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN-RYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc-eEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 38899999999999999999988754 467789999876332 4478999999999999999999998864
No 150
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=87.76 E-value=16 Score=30.98 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=6.6
Q ss_pred HHHHHHHhccCCeeEE
Q 022894 113 DDIRELFSEIGELKRY 128 (290)
Q Consensus 113 ~dL~~~F~~~G~i~~v 128 (290)
++|-++=+-||+|.++
T Consensus 89 ~qIGKVDEIfG~i~d~ 104 (215)
T KOG3262|consen 89 EQIGKVDEIFGPINDV 104 (215)
T ss_pred hhhcchhhhccccccc
Confidence 3333333334555443
No 151
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=87.15 E-value=0.51 Score=39.72 Aligned_cols=77 Identities=17% Similarity=0.273 Sum_probs=55.3
Q ss_pred CCCEEEEeCCCCCCCHH-----HHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCe-eeE
Q 022894 97 VGTKLYVSNLHPGVTND-----DIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK-PMK 170 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~-----dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~-~i~ 170 (290)
-.++|.+.+|+..|-.+ ..+.+|.+|-+.....++ ++..+.-|.|.+++.|..|..+++...|.++ .|+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-----rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-----RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-----HhhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 35678888888664332 234556665554444444 3466788999999999999999999999998 778
Q ss_pred EEEecCCC
Q 022894 171 IEVVGTNA 178 (290)
Q Consensus 171 V~~a~~~~ 178 (290)
.-++++..
T Consensus 84 ~yfaQ~~~ 91 (193)
T KOG4019|consen 84 LYFAQPGH 91 (193)
T ss_pred EEEccCCC
Confidence 77776543
No 152
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.27 E-value=2.4 Score=39.95 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=45.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCee-EEEEEeCCCCCCceEEEEEecCHHHHHHHHH
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELK-RYAIHFDKNGRPSGSAEVVYARRSDAFAALK 157 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~-~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~ 157 (290)
-.+.|-|.++|.....+||-.+|+.|+.-- +|.++.|. .||-+|.+...|..||-
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhh
Confidence 346899999999999999999999997543 56666553 79999999999999984
No 153
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=84.16 E-value=0.053 Score=51.07 Aligned_cols=78 Identities=14% Similarity=0.288 Sum_probs=64.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
.+.+|-|.|+|+...++-|..|+..||.|..|.++...+ -.-..-|+|.+.+.+..||.+|++..|....++|.+.-.
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 456799999999999999999999999999886643221 112345789999999999999999999999999987643
No 154
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=83.52 E-value=2.1 Score=39.70 Aligned_cols=17 Identities=76% Similarity=1.511 Sum_probs=7.3
Q ss_pred CCCCCCCCCCCCCCCCC
Q 022894 246 GGGGGGGRGRGRGRGRG 262 (290)
Q Consensus 246 Gg~gg~g~g~g~g~grg 262 (290)
|+++|+++|++++++||
T Consensus 442 ggr~gggrgrgggggrg 458 (465)
T KOG3973|consen 442 GGRDGGGRGRGGGGGRG 458 (465)
T ss_pred CCCCCCCCCCCCCCCCc
Confidence 33444444444444443
No 155
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=79.48 E-value=0.41 Score=41.57 Aligned_cols=75 Identities=29% Similarity=0.336 Sum_probs=62.6
Q ss_pred CCCEEEEeC----CCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 97 VGTKLYVSN----LHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 97 ~~~~l~V~n----L~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
.-.+++.+| |...++++.+.++|+..++|..+++..+..++++.+.||++......-.++..+....+--+++.+
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCccc
Confidence 446777777 888899999999999999999999988888889999999999988888888888776665554444
No 156
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=78.72 E-value=0.3 Score=45.67 Aligned_cols=75 Identities=15% Similarity=0.113 Sum_probs=55.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecCC
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~~ 177 (290)
.+|+|.+|+..+...++-++|..+|+|....+.. +...-+|.|+|........|+ .+++.++.=+...+.+.+|.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as---k~~s~~c~~sf~~qts~~hal-r~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS---KSRSSSCSHSFRKQTSSKHAL-RSHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc---cCCCcchhhhHhhhhhHHHHH-HhcchhhhhhhhhhhhcCcc
Confidence 6899999999999999999999999988655432 233446779999988888888 45677666444444444443
No 157
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=78.24 E-value=5.1 Score=36.34 Aligned_cols=79 Identities=13% Similarity=0.226 Sum_probs=57.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC--------CCCCceEEEEEecCHHHHHHH----HHHhCC--c
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK--------NGRPSGSAEVVYARRSDAFAA----LKRYNN--V 162 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~--------tg~~kG~afV~F~~~~~A~~A----i~~lng--~ 162 (290)
..+.|.+.||...++--.+-..|..||+|++|.++.+. .........+.|-+.+.|..- ++.|+. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 35678899999888888888899999999999998765 223456788999988765432 222222 3
Q ss_pred eeCCeeeEEEEec
Q 022894 163 LLDGKPMKIEVVG 175 (290)
Q Consensus 163 ~l~G~~i~V~~a~ 175 (290)
.|.-..|+|.++.
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 4677778887765
No 158
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=77.81 E-value=2.3 Score=33.36 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=27.5
Q ss_pred EEEEeCCCCC---------CCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHH
Q 022894 100 KLYVSNLHPG---------VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRS 150 (290)
Q Consensus 100 ~l~V~nL~~~---------~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~ 150 (290)
++.|-|++.. ++.+.|.+.|..|.+++ +..++++. -+.++++|+|.+.-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCCh
Confidence 4556677443 45678999999998775 66666665 34789999998743
No 159
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=77.72 E-value=15 Score=33.25 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=35.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCee-EEEEEeCCCCCCceEEEEEecCH
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELK-RYAIHFDKNGRPSGSAEVVYARR 149 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~-~v~i~~d~tg~~kG~afV~F~~~ 149 (290)
.+-|||.||+.++--.||+..+.+.+.+- ++.+. -+.+-||++|-+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee-----cCCcceeEecCCc
Confidence 45699999999999999999988765443 33332 3466799999874
No 160
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=76.79 E-value=0.37 Score=46.96 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=55.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCC
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 166 (290)
-..|+|||.|++++++-++|..++..+--+.++.+..+. .....-+.+|+|..--....|+.+||+..+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 456899999999999999999999988666666554443 33445678999998888888888888877644
No 161
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.96 E-value=0.38 Score=45.65 Aligned_cols=80 Identities=4% Similarity=-0.157 Sum_probs=63.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
+++.|+..|+-.+++++|.-+|..|+.|..+.+..-. .+..+-++||+-.. .++..||..+.-..+.+..+.|.++..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 4567888999999999999999999999877765544 45556788888765 578889988888888898888888765
Q ss_pred CC
Q 022894 177 NA 178 (290)
Q Consensus 177 ~~ 178 (290)
..
T Consensus 82 s~ 83 (572)
T KOG4365|consen 82 SS 83 (572)
T ss_pred hh
Confidence 43
No 162
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=71.71 E-value=4.4 Score=34.71 Aligned_cols=64 Identities=23% Similarity=0.344 Sum_probs=44.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCC-CCCceEEEEEecCHHHHHHHHH
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN-GRPSGSAEVVYARRSDAFAALK 157 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~t-g~~kG~afV~F~~~~~A~~Ai~ 157 (290)
.......+++.+++..++..++..+|..++.+..+.+..... .....+.++.+.....+..++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 355778999999999999999999999999997776666552 2233344444444444444443
No 163
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=70.90 E-value=8.5 Score=27.14 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=42.3
Q ss_pred HHHHHHHhccC-CeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 113 DDIRELFSEIG-ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 113 ~dL~~~F~~~G-~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
++|.+-|...| +|..|.-+..+ +..+.-.-||+++...+ ..+.|+=..|++..|+|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCC
Confidence 46777777666 56666666666 66777788999887655 334566678899999998544
No 164
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=66.27 E-value=8.2 Score=27.33 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=41.0
Q ss_pred HHHHHHHhccC-CeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 113 DDIRELFSEIG-ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 113 ~dL~~~F~~~G-~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
++|++-|..+| ++..|..+..+ +..+...-||+.....+... .|+=..|+++.|.|+-.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 46777888777 56677666666 56666778888876543333 55667889999888844
No 165
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=65.95 E-value=27 Score=23.31 Aligned_cols=54 Identities=11% Similarity=0.262 Sum_probs=41.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCH----HHHHHHHHH
Q 022894 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARR----SDAFAALKR 158 (290)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~----~~A~~Ai~~ 158 (290)
+|.|.||.-.--...|++.+...-.|.++.+... .+.+.|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~-----~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE-----TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC-----CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5788888877778889999999888988888754 45788888754 556666654
No 166
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=62.49 E-value=31 Score=24.99 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=39.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHhcc-C-CeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHH
Q 022894 100 KLYVSNLHPGVTNDDIRELFSEI-G-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158 (290)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~-G-~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ 158 (290)
.-|+-.++...+..+|++.++.+ + .|.+|..+.-+.+..+ |||++..-+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KK--A~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKK--AYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceE--EEEEECCCCcHHHHHHh
Confidence 35555689999999999888864 3 4556665555544434 99999887777665443
No 167
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=62.05 E-value=29 Score=25.54 Aligned_cols=56 Identities=20% Similarity=0.193 Sum_probs=39.4
Q ss_pred EEEeCCCCCCCHHHHHHHHhcc-C-CeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHH
Q 022894 101 LYVSNLHPGVTNDDIRELFSEI-G-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158 (290)
Q Consensus 101 l~V~nL~~~~te~dL~~~F~~~-G-~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ 158 (290)
.|+--++...+..+|++.++.+ + .|.+|..+.-+.+..+ |||+|....+|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KK--A~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKK--AYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEE--EEEEeCCCCcHHHHHHh
Confidence 4444578899999999998864 3 4556666555544444 99999988887776544
No 168
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=61.41 E-value=20 Score=24.86 Aligned_cols=20 Identities=30% Similarity=0.624 Sum_probs=15.9
Q ss_pred HHHHHHHhccCCeeEEEEEe
Q 022894 113 DDIRELFSEIGELKRYAIHF 132 (290)
Q Consensus 113 ~dL~~~F~~~G~i~~v~i~~ 132 (290)
++|+++|+.+|+|.-+-|..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 68999999999998555443
No 169
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=61.26 E-value=9.5 Score=35.87 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=46.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCe-eEEEEEeCCC---CCCceEEEEEecCHHHHHHHHHHhCCcee
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGEL-KRYAIHFDKN---GRPSGSAEVVYARRSDAFAALKRYNNVLL 164 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i-~~v~i~~d~t---g~~kG~afV~F~~~~~A~~Ai~~lng~~l 164 (290)
.-++|.|.+||+..++++|.+-...|-.- ....+..... ..--..|||.|.++++...-...|+++.|
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 35789999999999999988776654321 1122221111 12246789999999998888888888665
No 170
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=59.31 E-value=26 Score=33.37 Aligned_cols=74 Identities=19% Similarity=0.167 Sum_probs=54.0
Q ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHhcc----CCeeEEEEEeCCCCC--------------------------------
Q 022894 95 IEVGTKLYVSNLHPG-VTNDDIRELFSEI----GELKRYAIHFDKNGR-------------------------------- 137 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~-~te~dL~~~F~~~----G~i~~v~i~~d~tg~-------------------------------- 137 (290)
-.+...|-|=||+|+ |...||..+|+.| |.|..|.|....-|+
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 346678999999986 7788999998866 566666654322110
Q ss_pred ----------------------------------CceEEEEEecCHHHHHHHHHHhCCceeCCee
Q 022894 138 ----------------------------------PSGSAEVVYARRSDAFAALKRYNNVLLDGKP 168 (290)
Q Consensus 138 ----------------------------------~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~ 168 (290)
.-=||.|+|.+.+.+.......+++++....
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~sa 287 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSA 287 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCcccccccc
Confidence 0227899999999999999999998876543
No 171
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=56.20 E-value=1e+02 Score=24.57 Aligned_cols=73 Identities=14% Similarity=0.144 Sum_probs=49.6
Q ss_pred CCCCEEEEeCCCCC---CCHHHHHHHHhccC-CeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 96 EVGTKLYVSNLHPG---VTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 96 ~~~~~l~V~nL~~~---~te~dL~~~F~~~G-~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
.....|.|+..... .+-..|++++.+-| .++++... .....|.|++.++..+|.+.|....-++-.|.+
T Consensus 33 gedpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-------~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAl 105 (127)
T PRK10629 33 QQESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-------NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQ 105 (127)
T ss_pred CCCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-------CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 34567777766444 45667888887765 33444443 236899999999999999988776656656666
Q ss_pred EEec
Q 022894 172 EVVG 175 (290)
Q Consensus 172 ~~a~ 175 (290)
.++.
T Consensus 106 nl~p 109 (127)
T PRK10629 106 QDDN 109 (127)
T ss_pred ecCC
Confidence 6554
No 172
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=54.93 E-value=13 Score=33.96 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=26.8
Q ss_pred EEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecCCCC
Q 022894 142 AEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 179 (290)
Q Consensus 142 afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~~~~ 179 (290)
|||+|++..+|+.|++.+.... ...++|+.|-+..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 7999999999999998655443 35567777765554
No 173
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=51.74 E-value=17 Score=30.70 Aligned_cols=55 Identities=22% Similarity=0.339 Sum_probs=38.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHh-ccCCeeEEEEEeCCCC--CCceEEEEEecCHHHHHHHHHH
Q 022894 99 TKLYVSNLHPGVTNDDIRELFS-EIGELKRYAIHFDKNG--RPSGSAEVVYARRSDAFAALKR 158 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~-~~G~i~~v~i~~d~tg--~~kG~afV~F~~~~~A~~Ai~~ 158 (290)
.++|.. .|++.|.++.. .-+.+..|.+...... ..+|-.||+|.+.+.|.++++.
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 455555 46666665543 2268887776555433 6788999999999999988864
No 174
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=50.58 E-value=54 Score=32.33 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=38.6
Q ss_pred CHHHHHHHHh----ccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022894 111 TNDDIRELFS----EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (290)
Q Consensus 111 te~dL~~~F~----~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (290)
+.-+|..+|. .+|.|+++.+...+..+.....++.|.+.++|..|+..+.
T Consensus 202 ~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 202 PGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 3457778775 6888998888776644556678899999999999988764
No 175
>PRK11901 hypothetical protein; Reviewed
Probab=47.77 E-value=71 Score=29.61 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=38.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEE--EecCHHHHHHHHHHhCC
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEV--VYARRSDAFAALKRYNN 161 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV--~F~~~~~A~~Ai~~lng 161 (290)
..+|-|..+ .+++.|+.|..++. +..+.|.... .|+. -|..| +|.+.++|+.||..|.-
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 345555444 46888888887774 4555554433 4443 35544 79999999999998864
No 176
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=47.12 E-value=61 Score=22.68 Aligned_cols=46 Identities=17% Similarity=0.345 Sum_probs=37.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecC
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR 148 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~ 148 (290)
..+|+|.++.-.--...+++.+.....|..+.+..+ .+.++|+|++
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~-----~~~~~V~~d~ 48 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE-----KGTATVTFDS 48 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc-----cCeEEEEEcC
Confidence 357888888877777889999998888888888765 4569999998
No 177
>PF14893 PNMA: PNMA
Probab=43.68 E-value=34 Score=31.90 Aligned_cols=95 Identities=18% Similarity=0.291 Sum_probs=52.6
Q ss_pred hHHHhhhcCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhc-cCCeeEEEEE---eCCCCCCceEEEEEecCHHHHHHHHHH
Q 022894 83 FEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSE-IGELKRYAIH---FDKNGRPSGSAEVVYARRSDAFAALKR 158 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~dL~~~F~~-~G~i~~v~i~---~d~tg~~kG~afV~F~~~~~A~~Ai~~ 158 (290)
.+++....+ ++.-+.|.|.+||.+|++++|++.+.. +-++-.+.|. +.+.-. .--|+|+|...-+-...=.+
T Consensus 6 L~dWCr~m~---~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~-~~aalve~~e~~n~~~iP~~ 81 (331)
T PF14893_consen 6 LEDWCRGMG---VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN-AKAALVEFAEDVNYSLIPRE 81 (331)
T ss_pred HHHHHHhcC---cChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc-cceeeeecccccchhhCchh
Confidence 445554433 456788999999999999999988753 2222222222 222112 23688988764332221111
Q ss_pred hCCceeCCeeeEEEEecCCCCCCccc
Q 022894 159 YNNVLLDGKPMKIEVVGTNAEIPLQA 184 (290)
Q Consensus 159 lng~~l~G~~i~V~~a~~~~~~~~~~ 184 (290)
+.-.|-..+|-+..+..+..+..
T Consensus 82 ---i~g~gg~W~Vv~~p~~~D~e~l~ 104 (331)
T PF14893_consen 82 ---IPGKGGPWRVVFKPPAPDAEFLR 104 (331)
T ss_pred ---cCCCCCceEEEecCCCCCHHHHH
Confidence 12234566766666555544433
No 178
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=40.31 E-value=27 Score=30.84 Aligned_cols=35 Identities=14% Similarity=0.309 Sum_probs=29.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY 128 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v 128 (290)
......+||+-|||..+|++.|.++.+++|.+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34567799999999999999999999999866543
No 179
>PF15063 TC1: Thyroid cancer protein 1
Probab=38.69 E-value=21 Score=25.70 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=23.1
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCee
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELK 126 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~ 126 (290)
.+--+-||-.+++.+.|+.||..-|+.+
T Consensus 26 RKkasaNIFe~vn~~qlqrLF~~sGD~k 53 (79)
T PF15063_consen 26 RKKASANIFENVNLDQLQRLFQKSGDKK 53 (79)
T ss_pred hhhhhhhhhhccCHHHHHHHHHHccchh
Confidence 3444678889999999999999999764
No 180
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=38.19 E-value=1.7e+02 Score=21.90 Aligned_cols=67 Identities=13% Similarity=0.322 Sum_probs=37.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHh-------cc-CCeeEEEE------EeCCCCCCce-EEEEEecCHHHHHHHHHHhCCcee
Q 022894 100 KLYVSNLHPGVTNDDIRELFS-------EI-GELKRYAI------HFDKNGRPSG-SAEVVYARRSDAFAALKRYNNVLL 164 (290)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~-------~~-G~i~~v~i------~~d~tg~~kG-~afV~F~~~~~A~~Ai~~lng~~l 164 (290)
++|| |.++++++++.++.+ .. |.|.++.. .+.-....+| |.++.|.-..++.+.++. ...|
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler--~lri 85 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK--ALKL 85 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH--HhCC
Confidence 4566 677788877665544 33 35555442 1211334455 577888876666666653 2345
Q ss_pred CCeeeE
Q 022894 165 DGKPMK 170 (290)
Q Consensus 165 ~G~~i~ 170 (290)
+...|+
T Consensus 86 ~e~VlR 91 (97)
T CHL00123 86 DENVLR 91 (97)
T ss_pred CCCeEE
Confidence 555554
No 181
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=37.87 E-value=62 Score=23.93 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=33.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEec
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA 147 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~ 147 (290)
+...-|||+|++..+-|.-.+.+.+..++= ++.+.+.... ..||.|-++-
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~~~~n-eqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDG-SAVMVWSDNN-EQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEEccCC-CCCEEEEEeC
Confidence 467789999999888776666666654333 3334444333 6789998873
No 182
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=36.99 E-value=94 Score=31.16 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=38.8
Q ss_pred CCHHHHHHHH----hccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022894 110 VTNDDIRELF----SEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (290)
Q Consensus 110 ~te~dL~~~F----~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (290)
.+.-||..+| ..+|.|+++.+...+.....-++++.|.+.++|.+|+..+.
T Consensus 278 ~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 278 AAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 3446788887 36888998888766644556688999999999998887653
No 183
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=36.90 E-value=90 Score=29.80 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=42.7
Q ss_pred CCEEEEeC-CCCCCCHHHHHHHHh----ccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022894 98 GTKLYVSN-LHPGVTNDDIRELFS----EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (290)
Q Consensus 98 ~~~l~V~n-L~~~~te~dL~~~F~----~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (290)
+..+.++. .+...+..+|..+|. .+|.|.++.+...+......+.++.|.+.++|.+|+..+.
T Consensus 131 G~~~~~~~~~~~~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 131 GEILRIGGKTAKDVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred CCEEEeCCcccCCCCCCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHH
Confidence 44444432 223344457888874 4788888888777655556678899999999999986653
No 184
>PF12643 MazG-like: MazG-like family
Probab=35.40 E-value=12 Score=28.42 Aligned_cols=16 Identities=38% Similarity=0.754 Sum_probs=14.2
Q ss_pred CCCCCCCC---HHHHHHhc
Q 022894 1 MATHVDMS---LDDIIKSR 16 (290)
Q Consensus 1 m~~~ld~s---lddii~~~ 16 (290)
||++|+.+ ||++|.++
T Consensus 51 La~rLGid~~~lD~~i~~K 69 (98)
T PF12643_consen 51 LADRLGIDFRELDEIIKEK 69 (98)
T ss_pred HHHHhCCCHHHHHHHHHHH
Confidence 67999999 99999876
No 185
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=35.31 E-value=59 Score=24.18 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=22.9
Q ss_pred EEEEecCHHHHHHHHHHh-CCceeCCeeeEEEEe
Q 022894 142 AEVVYARRSDAFAALKRY-NNVLLDGKPMKIEVV 174 (290)
Q Consensus 142 afV~F~~~~~A~~Ai~~l-ng~~l~G~~i~V~~a 174 (290)
|+|+|.++.-|+..++.- +...++...+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 689999999999888532 224556666666543
No 186
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=34.39 E-value=19 Score=36.34 Aligned_cols=72 Identities=25% Similarity=0.240 Sum_probs=54.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
.+||+.|-...-+..-|..+|..+.+++.+.++..- .+....-++++|..+..+..|. .|.++.+....+++
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKCLKS 584 (681)
T ss_pred CceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhh-ccccccccccceec
Confidence 388999988888888899999999998877776654 5555557999999998887665 56666665554443
No 187
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=34.29 E-value=16 Score=34.69 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=44.6
Q ss_pred CEEEEeCCCCCCC--------HHHHHHHHhc--cCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHH
Q 022894 99 TKLYVSNLHPGVT--------NDDIRELFSE--IGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALK 157 (290)
Q Consensus 99 ~~l~V~nL~~~~t--------e~dL~~~F~~--~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~ 157 (290)
..+|+.++....+ .++|+..|.. .+++..+.+.++. ...+.|..||+|.....|++++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3455555544433 3589999988 6777778777777 77788999999999999998884
No 188
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=33.95 E-value=1.1e+02 Score=24.92 Aligned_cols=53 Identities=11% Similarity=0.144 Sum_probs=34.8
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-cC-CeeEEEEEeCCCCCCceEEEEEecCHHHHHHH
Q 022894 101 LYVSNLHPGVTNDDIRELFSE-IG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAA 155 (290)
Q Consensus 101 l~V~nL~~~~te~dL~~~F~~-~G-~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~A 155 (290)
.||--++...+..+|++.++. |+ .|..|..+.-+.+..+ |||.+....+|...
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KK--A~V~L~~~~~aidv 138 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKK--AYIRLSPDVDALDV 138 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceE--EEEEECCCCcHHHH
Confidence 344457888999999988886 43 3445555544444444 99999776665443
No 189
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=33.79 E-value=22 Score=26.43 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=19.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHH
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELF 119 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F 119 (290)
...+|.|+|||....+++|++.+
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeE
Confidence 56899999999999999998653
No 190
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=33.65 E-value=65 Score=28.94 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=25.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEE
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIH 131 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~ 131 (290)
.....|.||||++|..-|..++...-.+..+.++
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 4567799999999999999999876555444444
No 191
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=32.14 E-value=2.2e+02 Score=21.93 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=31.0
Q ss_pred HHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCe
Q 022894 113 DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK 167 (290)
Q Consensus 113 ~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~ 167 (290)
.+|.++++.+| |.+..|..|.. .+.-|+++++.+.+..- .+|...+++-+
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~-~n~lFgy~E~~d~~a~m---~~~a~~ev~qk 76 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEE-ENLLFGYWEYEDFEADM---AKMAETEVCQK 76 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCC-cccEEEEEEEcChHHHH---HHHhCCHHHHH
Confidence 35777888886 66666666652 12459999999554443 34455555443
No 192
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=31.06 E-value=17 Score=25.48 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=26.6
Q ss_pred HHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022894 113 DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (290)
Q Consensus 113 ~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (290)
++|++.|..+....++. +=.+|..|.+.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~v---------kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV---------KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhh---------hhhhccCCCCHHHHHHHHHHhh
Confidence 67888876654443221 1148999999999988887653
No 193
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=30.74 E-value=1.9e+02 Score=22.16 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=30.6
Q ss_pred HHHHHhccCCeeEEEEEeCC--CC--------------CCceEEEEEecCHHHHHHHHHHh
Q 022894 115 IRELFSEIGELKRYAIHFDK--NG--------------RPSGSAEVVYARRSDAFAALKRY 159 (290)
Q Consensus 115 L~~~F~~~G~i~~v~i~~d~--tg--------------~~kG~afV~F~~~~~A~~Ai~~l 159 (290)
..++|..||.+..+...-+. .| ..--|.+|+|.+.+...++..++
T Consensus 25 a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 25 AAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 45788999988766554432 22 23458899999999988887764
No 194
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=29.01 E-value=3.6e+02 Score=22.87 Aligned_cols=16 Identities=19% Similarity=0.520 Sum_probs=9.3
Q ss_pred CCCCCCCChhHHHHHH
Q 022894 265 KKNPVDKSADDLDKEL 280 (290)
Q Consensus 265 r~~~~~~~~~~ld~el 280 (290)
+..+|.---||+|.++
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (182)
T PRK06958 165 PSAPAGGGFDEMDDDI 180 (182)
T ss_pred cCCCCCCCcccccccC
Confidence 3444446667777654
No 195
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.92 E-value=46 Score=28.53 Aligned_cols=18 Identities=44% Similarity=0.530 Sum_probs=15.9
Q ss_pred CCChhHHHHHHHHHHHhh
Q 022894 270 DKSADDLDKELDNYHAEA 287 (290)
Q Consensus 270 ~~~~~~ld~el~~y~~~~ 287 (290)
++..+|||+|||+...|+
T Consensus 157 eide~dL~aELdaL~~E~ 174 (218)
T KOG1655|consen 157 DIDEADLDAELDALGQEL 174 (218)
T ss_pred CcCHHHHHHHHHHHHhHh
Confidence 689999999999987775
No 196
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=28.66 E-value=1.2e+02 Score=27.57 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=44.6
Q ss_pred CCCCEEEEeCCCCC------------CCHHHHHHHHhccCCeeEEEEEe-CC-----CCCC-----ceEE---------E
Q 022894 96 EVGTKLYVSNLHPG------------VTNDDIRELFSEIGELKRYAIHF-DK-----NGRP-----SGSA---------E 143 (290)
Q Consensus 96 ~~~~~l~V~nL~~~------------~te~dL~~~F~~~G~i~~v~i~~-d~-----tg~~-----kG~a---------f 143 (290)
+..-|||+-.||-. -+++-|...|+.||.|..|.|+. |+ +++. ++|+ |
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 44567888777632 35677999999999999887643 22 4443 3333 3
Q ss_pred EEecCHHHHHHHHHHhCCcee
Q 022894 144 VVYARRSDAFAALKRYNNVLL 164 (290)
Q Consensus 144 V~F~~~~~A~~Ai~~lng~~l 164 (290)
|.|........|+..|.+..+
T Consensus 227 vqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchH
Confidence 455555555667777777554
No 197
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=28.36 E-value=2.1e+02 Score=19.91 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=28.2
Q ss_pred HHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022894 113 DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (290)
Q Consensus 113 ~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (290)
.+|.+++.++| +.-+.+. . +| .-++.|+.|.+.+.++++++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~s-G-sG-~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMS-G-SG-GGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEE-T-TS-SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecC-C-CC-CCCeEEEEECCHHHHHHHHHHHH
Confidence 45667778888 4444443 1 10 03477888888889888887763
No 198
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=28.11 E-value=68 Score=22.47 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=20.0
Q ss_pred EEEEEecCHHHHHHHHHHhCCcee
Q 022894 141 SAEVVYARRSDAFAALKRYNNVLL 164 (290)
Q Consensus 141 ~afV~F~~~~~A~~Ai~~lng~~l 164 (290)
+.+|+|.+..+|.+|-+.|....|
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 689999999999999988765544
No 199
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=27.87 E-value=46 Score=20.44 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHhccC
Q 022894 108 PGVTNDDIRELFSEIG 123 (290)
Q Consensus 108 ~~~te~dL~~~F~~~G 123 (290)
.++++++|+++|....
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678999999998764
No 200
>PRK10905 cell division protein DamX; Validated
Probab=27.11 E-value=1.8e+02 Score=27.03 Aligned_cols=58 Identities=26% Similarity=0.315 Sum_probs=37.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEE--EecCHHHHHHHHHHhCC
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEV--VYARRSDAFAALKRYNN 161 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV--~F~~~~~A~~Ai~~lng 161 (290)
.+|-|.-+. +++.|++|-.+++ +....+.... +|+. -|..+ .|.+.++|++||+.|.-
T Consensus 248 YTLQL~A~S---s~~~l~~fakKlg-L~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 248 YTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred eEEEEEecC---CHHHHHHHHHHcC-CCceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCH
Confidence 455554444 6788888888874 4433333332 4442 24433 79999999999998864
No 201
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=26.73 E-value=96 Score=23.52 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=33.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCH
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARR 149 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~ 149 (290)
+...-|||++++..+-+.-.+.+-+.++. -++.+.+..+.. .||.|-++-+.
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~~~e-qG~~~~t~G~~ 76 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWATNTE-SGFEFQTFGEN 76 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcCCCC-CCcEEEecCCC
Confidence 46778999999887766555555555543 334444433334 49999888754
No 202
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=26.48 E-value=53 Score=32.46 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=34.2
Q ss_pred ceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecCCC
Q 022894 139 SGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (290)
Q Consensus 139 kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~~~ 178 (290)
..+++++|++++.+.+|+..+++....+..+.|++.....
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~ 102 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEV 102 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccc
Confidence 4599999999999999999999999888888877665443
No 203
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=25.26 E-value=1.3e+02 Score=21.81 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=21.9
Q ss_pred CceEEEEEecCHHHHHHHHHHhCCce
Q 022894 138 PSGSAEVVYARRSDAFAALKRYNNVL 163 (290)
Q Consensus 138 ~kG~afV~F~~~~~A~~Ai~~lng~~ 163 (290)
.+||-|||=.++.++..|++.+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 68999999999999999998776544
No 204
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=23.65 E-value=1.8e+02 Score=25.02 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=36.9
Q ss_pred CCHHHHHHH---HhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeee
Q 022894 110 VTNDDIREL---FSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169 (290)
Q Consensus 110 ~te~dL~~~---F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i 169 (290)
+++++|++| ...|| |.. .|+.|. ++...-+.|+.=.+.+.+..|++.|....+.-...
T Consensus 39 i~~~~lk~F~k~AkKyG-V~y-av~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~~~~~ 100 (204)
T PF12687_consen 39 ITDEDLKEFKKEAKKYG-VDY-AVKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLKKEKR 100 (204)
T ss_pred cCHhhHHHHHHHHHHcC-Cce-EEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhhhhhh
Confidence 456666655 56787 333 456666 44445566666677888888998887766654433
No 205
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.46 E-value=2.3e+02 Score=23.21 Aligned_cols=47 Identities=15% Similarity=0.357 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022894 105 NLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (290)
Q Consensus 105 nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (290)
.|+..+.++-|+++.+-.|.|.... -+| ..+.|-+.+...+|++.+-
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D--------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD--------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc--------EEEEeccHHHHHHHHHHHH
Confidence 3777888899999999999887665 333 4677899999999998763
No 206
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=23.14 E-value=33 Score=30.74 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=55.2
Q ss_pred CCCCEEEEeCCCCCCCHHH-H--HHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 96 EVGTKLYVSNLHPGVTNDD-I--RELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~d-L--~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
+.-..+++.|+-..+..+- | ...|+.|-.+....++.+.-+....++|+.|.......++-..-+.+.+.-.+|++.
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeec
Confidence 3445677888766666655 3 778888888888888888877778899999998776666665555566655555543
No 207
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=22.98 E-value=1.8e+02 Score=21.74 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=27.1
Q ss_pred EEEEeCCCCCCCHHHHHH---HHhccCCeeEEEE--Ee-CCCCCCceEEEEEec
Q 022894 100 KLYVSNLHPGVTNDDIRE---LFSEIGELKRYAI--HF-DKNGRPSGSAEVVYA 147 (290)
Q Consensus 100 ~l~V~nL~~~~te~dL~~---~F~~~G~i~~v~i--~~-d~tg~~kG~afV~F~ 147 (290)
..|+.|||.++.+..+.. +|..+.+-..|.+ .. .....+.|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 458999999998877654 4545543333333 11 225566777655443
No 208
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=22.46 E-value=2.1e+02 Score=24.06 Aligned_cols=75 Identities=17% Similarity=0.237 Sum_probs=41.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCce--EEE-EEecCH---HHHHHHHHHhCCceeCCeeeEEEE
Q 022894 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSG--SAE-VVYARR---SDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG--~af-V~F~~~---~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.|.|.-=|..++-++|-++|-+.-....+ . +.+.-.| |-- |-+.+. +.|++.++++....+..++|.+++
T Consensus 59 ~V~V~yDp~~isy~~LL~~ff~ihDPT~~--n--rQGnD~GtqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI 134 (174)
T COG0225 59 AVEVTYDPKVISYEELLEVFFEIHDPTSL--N--RQGNDRGTQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEI 134 (174)
T ss_pred EEEEEeCCccccHHHHHHHHheecCCCCC--C--ccCCcccccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEe
Confidence 56776667788888888887654222211 1 1111111 222 233333 345556666666667777888887
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
..-..
T Consensus 135 ~p~~~ 139 (174)
T COG0225 135 EPAKN 139 (174)
T ss_pred ecccc
Confidence 65443
No 209
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=22.21 E-value=3e+02 Score=19.62 Aligned_cols=62 Identities=8% Similarity=0.065 Sum_probs=38.7
Q ss_pred EEEeCCCCCCCHHHHHHHHh-------ccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCcee
Q 022894 101 LYVSNLHPGVTNDDIRELFS-------EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL 164 (290)
Q Consensus 101 l~V~nL~~~~te~dL~~~F~-------~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l 164 (290)
|...+||..+|.++|.+... ++-.|.-+.-..+.. ..+-||+.+=.+.+...++-+. .++..
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d-~~k~~Cly~Ap~~eaV~~~~~~-aG~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSED-DGKIFCLYEAPDEEAVREHARR-AGLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecC-CCeEEEEEECCCHHHHHHHHHH-cCCCc
Confidence 45678998899999887654 333444443333331 2366888888888777766654 35443
No 210
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=22.10 E-value=1.1e+02 Score=29.22 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHHh----ccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHH
Q 022894 105 NLHPGVTNDDIRELFS----EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 156 (290)
Q Consensus 105 nL~~~~te~dL~~~F~----~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai 156 (290)
+|-.+-|--||+.||- ..|.|+.|.|...+..++...||+-.++-+++++++
T Consensus 231 slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~gi~sf~~v~k~f 286 (511)
T KOG1232|consen 231 SLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIGIESFDDVQKVF 286 (511)
T ss_pred hhcccCccccchhheecCCceeeEEeeEEEeecCCCcceeEEEEccccHHHHHHHH
Confidence 4445556678999993 678889999988877777888999888887777643
No 211
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=21.40 E-value=1.5e+02 Score=23.43 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=8.2
Q ss_pred HhCCceeCCeeeEE
Q 022894 158 RYNNVLLDGKPMKI 171 (290)
Q Consensus 158 ~lng~~l~G~~i~V 171 (290)
.|+...|.|..|+.
T Consensus 55 r~pEcYirGttIky 68 (134)
T KOG3293|consen 55 RMPECYIRGTTIKY 68 (134)
T ss_pred ecceeEEecceeEE
Confidence 45556666666653
No 212
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=21.21 E-value=2.9e+02 Score=19.14 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=26.8
Q ss_pred HHHHHHHHhccC-CeeEEEEEeCCCCCCceEEEEEec-CHHHHHHHHHHhCC
Q 022894 112 NDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYA-RRSDAFAALKRYNN 161 (290)
Q Consensus 112 e~dL~~~F~~~G-~i~~v~i~~d~tg~~kG~afV~F~-~~~~A~~Ai~~lng 161 (290)
-.++-+.|+.++ .+.+|.-...+.....=+-||+|+ ..++.++|++.|..
T Consensus 14 L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 14 LARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 456677787775 333333222222222224467766 55567778877754
No 213
>PF11004 Kdo_hydroxy: 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase; InterPro: IPR021266 This bacterial family of proteins has no known function.
Probab=21.05 E-value=92 Score=28.21 Aligned_cols=46 Identities=24% Similarity=0.421 Sum_probs=31.7
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-hccCCeeEEEEEeCC-CCCCce
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELF-SEIGELKRYAIHFDK-NGRPSG 140 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F-~~~G~i~~v~i~~d~-tg~~kG 140 (290)
..+.++.||+-+|++.++++|. .|+ ..+-..+.-.|.++. ++.-+|
T Consensus 17 ~LE~G~VL~fP~l~F~l~~~E~-~fL~p~~~d~k~KNIs~~p~~~~l~G 64 (281)
T PF11004_consen 17 ALEQGKVLYFPQLRFPLSPEER-AFLDPAIVDPKRKNISYRPNTGSLRG 64 (281)
T ss_pred HhhCCCEEEeCCCCCCCChhHH-hhcChhhhCCCCCceeecCCCCceec
Confidence 4578999999999999999887 444 344344444566666 455555
No 214
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=21.00 E-value=3.4e+02 Score=27.13 Aligned_cols=65 Identities=22% Similarity=0.325 Sum_probs=39.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecCC
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~~ 177 (290)
+-.|.-+||.++ |.|.++.-+...--.++|-| ++|+++++|.+||.. +..-.|..|.|.+.-|+
T Consensus 355 gl~iL~GNLaP~-------------GaViK~sa~~~~~~~~~G~A-~VF~see~a~~ai~~--g~i~~gdVvViRyeGPk 418 (535)
T TIGR00110 355 GLAILKGNLAPN-------------GAVVKIAGVDEDMTKFEGPA-KVFESEEEALEAILG--GKIKEGDVVVIRYEGPK 418 (535)
T ss_pred CEEEEecCCCcC-------------CeEEEecccCCcccEEEEeE-EEECCHHHHHHHHhc--CCCCCCeEEEEeCCCCC
Confidence 446666677543 34444332222112345555 569999999999964 44456778888887776
Q ss_pred C
Q 022894 178 A 178 (290)
Q Consensus 178 ~ 178 (290)
-
T Consensus 419 G 419 (535)
T TIGR00110 419 G 419 (535)
T ss_pred C
Confidence 4
No 215
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=20.99 E-value=1.6e+02 Score=27.66 Aligned_cols=50 Identities=14% Similarity=0.276 Sum_probs=34.7
Q ss_pred CCCEEEEeCCCC----CCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHH
Q 022894 97 VGTKLYVSNLHP----GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAAL 156 (290)
Q Consensus 97 ~~~~l~V~nL~~----~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai 156 (290)
....|||.|=+. .++.++|+.+.+..-. .+.|+.| -||++|.. +++...+
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvD-------EAY~eF~~-~~~~~l~ 198 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVID-------EAYIEFSP-ESSLELL 198 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEe-------CchhhcCC-chhhhhc
Confidence 467889986532 4778999999988755 3445555 39999998 4444443
No 216
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=20.85 E-value=2.4e+02 Score=17.97 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=22.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCee
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELK 126 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~ 126 (290)
..++|.+.....+.++|++++..+|-..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v 29 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKV 29 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEE
Confidence 4678888776788999999999998643
No 217
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.44 E-value=2.1e+02 Score=25.50 Aligned_cols=73 Identities=10% Similarity=0.058 Sum_probs=44.1
Q ss_pred CCEEEEeCCCC-----CCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEe---cCHHHHHHHHHHhCCceeCCeee
Q 022894 98 GTKLYVSNLHP-----GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVY---ARRSDAFAALKRYNNVLLDGKPM 169 (290)
Q Consensus 98 ~~~l~V~nL~~-----~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F---~~~~~A~~Ai~~lng~~l~G~~i 169 (290)
..+|.|.|++. ..+.++|.+++..+.....+.++.|. +.+++.- .+.+....+++.+....-..+..
T Consensus 137 ~v~l~lEN~~~~~~~l~~~~~el~~ll~~~~~~~~lg~~lDt-----~H~~~~g~~~~~~~~~~~~~~~~~~~~g~~~i~ 211 (274)
T TIGR00587 137 IVTILLENMAGQGSELGRSFEELAYIIKVIVDKRRIGVCLDT-----CHFFAAGYDITTKAYFEVVKNEFDVVVGFKYLK 211 (274)
T ss_pred CCEEEEEeCCCCCCccCCCHHHHHHHHHhcCCCCceEEEEEh-----hhHHhcCCCcCCHHHHHHHHHHHHHhcCHhhee
Confidence 47899999973 35889999999988755567788773 2333322 23555666665544322113344
Q ss_pred EEEEec
Q 022894 170 KIEVVG 175 (290)
Q Consensus 170 ~V~~a~ 175 (290)
.|.+..
T Consensus 212 ~vHl~D 217 (274)
T TIGR00587 212 AIHLND 217 (274)
T ss_pred EEEEEc
Confidence 444443
Done!