Query 022894
Match_columns 290
No_of_seqs 424 out of 2376
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 12:55:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f3j_A RNA and export factor b 100.0 1E-34 3.5E-39 244.9 15.4 154 1-178 15-168 (177)
2 3ulh_A THO complex subunit 4; 99.9 2.2E-22 7.4E-27 154.9 12.7 101 73-175 6-106 (107)
3 4fxv_A ELAV-like protein 1; RN 99.9 2.2E-22 7.4E-27 153.5 12.4 81 96-176 17-98 (99)
4 3q2s_C Cleavage and polyadenyl 99.9 3.6E-23 1.2E-27 181.0 6.3 82 97-178 67-151 (229)
5 3s8s_A Histone-lysine N-methyl 99.9 3.2E-21 1.1E-25 149.9 12.7 83 96-178 4-87 (110)
6 2kt5_A RNA and export factor-b 99.9 3.3E-21 1.1E-25 152.4 12.7 105 73-179 12-116 (124)
7 1h2v_Z 20 kDa nuclear CAP bind 99.9 9.9E-21 3.4E-25 155.5 14.1 85 94-178 35-120 (156)
8 3bs9_A Nucleolysin TIA-1 isofo 99.8 9.9E-21 3.4E-25 139.9 12.1 82 96-177 4-86 (87)
9 2dnz_A Probable RNA-binding pr 99.8 1.4E-20 4.7E-25 141.5 12.4 83 96-178 3-86 (95)
10 2dgs_A DAZ-associated protein 99.8 2.2E-20 7.5E-25 141.7 12.8 86 93-179 5-91 (99)
11 1whw_A Hypothetical protein ri 99.8 1.9E-20 6.4E-25 142.0 12.2 86 94-179 4-90 (99)
12 2cpz_A CUG triplet repeat RNA- 99.8 2E-20 6.8E-25 145.8 12.4 85 95-179 22-107 (115)
13 2lxi_A RNA-binding protein 10; 99.8 3.2E-21 1.1E-25 144.6 7.5 81 98-178 1-84 (91)
14 1x5s_A Cold-inducible RNA-bind 99.8 2E-20 6.9E-25 142.6 12.0 86 94-179 8-94 (102)
15 2dnm_A SRP46 splicing factor; 99.8 1E-20 3.6E-25 144.5 10.4 86 93-178 8-94 (103)
16 2cq0_A Eukaryotic translation 99.8 2.2E-20 7.4E-25 142.7 11.8 84 95-178 12-96 (103)
17 2do4_A Squamous cell carcinoma 99.8 3E-20 1E-24 141.2 12.6 84 95-178 14-97 (100)
18 3md1_A Nuclear and cytoplasmic 99.8 3.8E-20 1.3E-24 135.5 12.1 81 98-178 1-82 (83)
19 2jrs_A RNA-binding protein 39; 99.8 1.1E-20 3.8E-25 146.1 9.8 87 92-178 20-107 (108)
20 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2E-20 7E-25 142.5 10.9 85 95-179 9-94 (102)
21 2lkz_A RNA-binding protein 5; 99.8 8.4E-21 2.9E-25 143.7 8.6 83 94-176 5-94 (95)
22 1x5u_A Splicing factor 3B subu 99.8 3E-20 1E-24 142.3 11.8 85 94-178 11-96 (105)
23 2dgo_A Cytotoxic granule-assoc 99.8 7.1E-20 2.4E-24 142.6 14.0 85 95-179 12-97 (115)
24 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.5E-20 8.4E-25 137.1 10.6 81 95-175 4-85 (85)
25 2cqc_A Arginine/serine-rich sp 99.8 3.2E-20 1.1E-24 139.4 11.3 82 95-176 12-94 (95)
26 2do0_A HnRNP M, heterogeneous 99.8 1.2E-19 4E-24 141.1 14.7 84 95-178 12-95 (114)
27 1x5t_A Splicing factor 3B subu 99.8 2.9E-20 9.9E-25 140.0 10.9 83 96-178 3-87 (96)
28 2e5h_A Zinc finger CCHC-type a 99.8 3E-20 1E-24 139.4 10.9 81 95-175 13-94 (94)
29 2dnh_A Bruno-like 5, RNA bindi 99.8 6.7E-20 2.3E-24 140.4 13.0 84 96-179 13-99 (105)
30 1x4h_A RNA-binding protein 28; 99.8 4.1E-20 1.4E-24 142.8 11.9 86 94-179 11-103 (111)
31 1p27_B RNA-binding protein 8A; 99.8 3.8E-20 1.3E-24 142.0 11.6 85 94-178 19-104 (106)
32 2fy1_A RNA-binding motif prote 99.8 7.1E-20 2.4E-24 143.4 13.2 83 96-178 5-87 (116)
33 4f25_A Polyadenylate-binding p 99.8 3.5E-20 1.2E-24 144.8 11.4 81 97-178 4-84 (115)
34 2ywk_A Putative RNA-binding pr 99.8 3.8E-20 1.3E-24 139.1 11.0 82 95-176 13-94 (95)
35 3p5t_L Cleavage and polyadenyl 99.8 7E-21 2.4E-25 142.2 6.8 81 99-179 2-85 (90)
36 2cq3_A RNA-binding protein 9; 99.8 1.3E-19 4.4E-24 138.4 14.0 84 95-179 12-95 (103)
37 2dgv_A HnRNP M, heterogeneous 99.8 5.2E-20 1.8E-24 137.5 11.5 85 93-178 3-87 (92)
38 2x1f_A MRNA 3'-END-processing 99.8 5.6E-20 1.9E-24 138.7 11.7 83 97-179 1-84 (96)
39 2la6_A RNA-binding protein FUS 99.8 6.1E-20 2.1E-24 139.3 11.8 83 93-175 8-99 (99)
40 2d9p_A Polyadenylate-binding p 99.8 6E-20 2.1E-24 140.2 11.7 84 95-179 12-95 (103)
41 2cph_A RNA binding motif prote 99.8 6.4E-20 2.2E-24 140.9 11.8 86 94-179 11-99 (107)
42 3ex7_B RNA-binding protein 8A; 99.8 3.2E-20 1.1E-24 146.9 10.4 86 93-178 17-103 (126)
43 2dgp_A Bruno-like 4, RNA bindi 99.8 5.6E-20 1.9E-24 141.0 11.1 85 94-178 9-97 (106)
44 2div_A TRNA selenocysteine ass 99.8 7.4E-20 2.5E-24 138.6 11.4 84 95-178 6-95 (99)
45 2cqd_A RNA-binding region cont 99.8 1.5E-19 5E-24 141.1 13.4 83 95-178 14-97 (116)
46 1oo0_B CG8781-PA, drosophila Y 99.8 7.4E-20 2.5E-24 141.4 11.4 86 93-178 21-107 (110)
47 2dng_A Eukaryotic translation 99.8 1.3E-19 4.4E-24 138.5 12.3 82 95-178 12-94 (103)
48 1wi8_A EIF-4B, eukaryotic tran 99.8 8.6E-20 3E-24 139.7 11.2 83 95-179 12-96 (104)
49 2cpf_A RNA binding motif prote 99.8 9E-20 3.1E-24 137.9 11.1 83 96-178 3-89 (98)
50 2dhg_A TRNA selenocysteine ass 99.8 8.4E-20 2.9E-24 139.6 10.9 85 94-178 5-91 (104)
51 2dgx_A KIAA0430 protein; RRM d 99.8 1.4E-19 4.9E-24 136.7 11.8 83 94-178 5-91 (96)
52 2cpe_A RNA-binding protein EWS 99.8 1E-19 3.4E-24 141.3 11.2 85 95-179 12-105 (113)
53 2dgw_A Probable RNA-binding pr 99.8 2.4E-19 8.1E-24 133.8 12.8 83 94-178 6-88 (91)
54 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.9E-19 9.8E-24 136.4 13.2 83 95-178 12-94 (103)
55 1u6f_A Tcubp1, RNA-binding pro 99.8 1.9E-19 6.5E-24 144.8 12.8 85 94-178 38-123 (139)
56 4a8x_A RNA-binding protein wit 99.8 1.2E-19 4E-24 134.3 10.3 82 97-178 3-86 (88)
57 2cqp_A RNA-binding protein 12; 99.8 6.4E-20 2.2E-24 138.7 9.1 83 95-177 12-95 (98)
58 2dh8_A DAZ-associated protein 99.8 8.9E-20 3.1E-24 139.8 9.7 84 95-179 13-97 (105)
59 2kxn_B Transformer-2 protein h 99.8 8E-20 2.7E-24 145.9 9.6 84 95-178 43-127 (129)
60 1x4c_A Splicing factor, argini 99.8 2.6E-19 8.9E-24 138.2 12.2 79 94-178 11-94 (108)
61 3s7r_A Heterogeneous nuclear r 99.8 3E-19 1E-23 132.0 11.7 80 94-174 7-87 (87)
62 2khc_A Testis-specific RNP-typ 99.8 1E-19 3.5E-24 142.4 9.6 81 95-175 37-118 (118)
63 1sjq_A Polypyrimidine tract-bi 99.8 1.3E-19 4.5E-24 139.3 10.0 80 95-179 13-94 (105)
64 3ns6_A Eukaryotic translation 99.8 3.2E-20 1.1E-24 141.5 6.5 81 97-177 5-93 (100)
65 3ucg_A Polyadenylate-binding p 99.8 2.6E-19 8.8E-24 132.8 11.2 79 98-177 6-85 (89)
66 2ek1_A RNA-binding protein 12; 99.8 5.4E-20 1.8E-24 138.3 7.6 81 96-176 13-94 (95)
67 2cqg_A TDP-43, TAR DNA-binding 99.8 4.8E-19 1.6E-23 135.2 13.0 84 94-179 11-95 (103)
68 1x4a_A Splicing factor, argini 99.8 4.6E-19 1.6E-23 136.7 12.7 82 95-178 19-100 (109)
69 3n9u_C Cleavage and polyadenyl 99.8 2.8E-19 9.5E-24 147.3 11.4 82 97-178 54-138 (156)
70 3r27_A HnRNP L, heterogeneous 99.8 3.5E-19 1.2E-23 135.6 11.0 80 94-178 17-98 (100)
71 3pgw_S U1-70K; protein-RNA com 99.8 6.2E-19 2.1E-23 167.8 15.4 84 96-179 100-184 (437)
72 1p1t_A Cleavage stimulation fa 99.8 7.8E-20 2.7E-24 139.6 7.3 84 96-179 6-90 (104)
73 1wez_A HnRNP H', FTP-3, hetero 99.8 1.8E-19 6E-24 138.0 9.1 82 95-178 12-93 (102)
74 2dnq_A RNA-binding protein 4B; 99.8 6E-19 2E-23 131.4 11.6 80 93-179 3-82 (90)
75 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.5E-19 1.9E-23 146.6 12.5 85 94-178 68-153 (165)
76 1s79_A Lupus LA protein; RRM, 99.8 2.3E-19 7.9E-24 137.7 9.3 80 96-176 9-88 (103)
77 2dis_A Unnamed protein product 99.8 3.9E-19 1.3E-23 137.0 10.5 85 95-179 5-94 (109)
78 2dgu_A Heterogeneous nuclear r 99.8 1E-18 3.4E-23 133.6 12.6 80 93-179 6-85 (103)
79 1x4e_A RNA binding motif, sing 99.8 5.9E-20 2E-24 135.3 5.3 79 96-174 3-82 (85)
80 2wbr_A GW182, gawky, LD47780P; 99.8 5.7E-19 1.9E-23 130.6 10.3 74 97-175 6-79 (89)
81 2rs2_A Musashi-1, RNA-binding 99.8 5E-19 1.7E-23 137.0 10.5 84 95-179 22-106 (109)
82 1wg5_A Heterogeneous nuclear r 99.8 4.2E-19 1.4E-23 136.1 9.9 83 95-178 12-95 (104)
83 2fc9_A NCL protein; structure 99.8 7E-19 2.4E-23 133.8 10.9 81 95-178 12-92 (101)
84 2err_A Ataxin-2-binding protei 99.8 5.3E-19 1.8E-23 136.8 10.3 84 94-178 25-108 (109)
85 2cpi_A CCR4-NOT transcription 99.8 3.9E-19 1.3E-23 137.9 9.3 84 95-178 12-102 (111)
86 1x4b_A Heterogeneous nuclear r 99.8 6.9E-19 2.4E-23 137.3 10.8 82 97-179 26-108 (116)
87 2db1_A Heterogeneous nuclear r 99.8 4.3E-19 1.5E-23 139.3 9.6 83 95-178 14-99 (118)
88 2kn4_A Immunoglobulin G-bindin 99.8 9.5E-19 3.3E-23 143.6 11.9 84 95-178 67-151 (158)
89 2cpy_A RNA-binding protein 12; 99.8 3.4E-19 1.2E-23 138.9 8.7 83 95-178 12-95 (114)
90 2m2b_A RNA-binding protein 10; 99.8 1.8E-19 6.1E-24 143.9 7.2 83 95-178 20-109 (131)
91 2lea_A Serine/arginine-rich sp 99.8 1.8E-19 6E-24 144.9 7.2 84 95-178 44-128 (135)
92 2cq4_A RNA binding motif prote 99.8 3.3E-19 1.1E-23 138.7 8.5 81 97-178 24-105 (114)
93 1x5o_A RNA binding motif, sing 99.8 9.9E-19 3.4E-23 135.9 11.2 82 96-177 23-112 (114)
94 2dgt_A RNA-binding protein 30; 99.8 1.7E-18 5.7E-23 129.5 12.0 78 94-178 6-83 (92)
95 1x4d_A Matrin 3; structural ge 99.8 4.1E-19 1.4E-23 136.0 8.5 78 96-178 13-93 (102)
96 2cq1_A PTB-like protein L; RRM 99.8 1.7E-18 5.6E-23 132.5 11.9 79 95-178 12-92 (101)
97 1why_A Hypothetical protein ri 99.8 1.2E-18 4.1E-23 131.6 10.9 79 95-178 14-94 (97)
98 2mss_A Protein (musashi1); RNA 99.8 2.9E-19 1E-23 128.4 7.1 74 100-174 1-75 (75)
99 2fc8_A NCL protein; structure 99.8 1.4E-18 4.8E-23 132.2 11.2 81 95-178 12-93 (102)
100 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.4E-19 8.1E-24 129.4 6.5 75 99-174 1-76 (77)
101 2jwn_A Embryonic polyadenylate 99.8 9.6E-19 3.3E-23 137.9 10.5 81 97-178 35-116 (124)
102 1wex_A Hypothetical protein (r 99.8 1.8E-18 6E-23 133.0 11.6 79 95-178 12-92 (104)
103 2a3j_A U1 small nuclear ribonu 99.8 1.5E-18 5.3E-23 138.1 11.5 84 93-178 24-111 (127)
104 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.2E-19 7.6E-24 136.6 6.4 83 94-178 15-99 (100)
105 2ad9_A Polypyrimidine tract-bi 99.8 9.8E-19 3.4E-23 137.5 10.2 80 95-179 28-109 (119)
106 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.2E-18 4.2E-23 139.8 11.0 80 95-174 60-140 (140)
107 2ki2_A SS-DNA binding protein 99.8 1.6E-19 5.6E-24 134.3 5.3 80 99-179 2-82 (90)
108 2hgl_A HNRPF protein, heteroge 99.8 5.1E-19 1.8E-23 142.5 8.6 82 95-177 41-125 (136)
109 2dnn_A RNA-binding protein 12; 99.8 5.5E-19 1.9E-23 137.0 8.4 79 97-177 15-93 (109)
110 2cpx_A Hypothetical protein FL 99.8 3.1E-19 1.1E-23 138.8 7.1 85 95-179 22-107 (115)
111 2jvr_A Nucleolar protein 3; RN 99.8 8.2E-19 2.8E-23 136.4 9.4 81 95-178 25-106 (111)
112 2dnp_A RNA-binding protein 14; 99.8 2.2E-18 7.7E-23 128.3 11.3 77 95-178 6-82 (90)
113 2cqh_A IGF-II mRNA-binding pro 99.8 1.6E-18 5.5E-23 129.8 10.1 80 94-179 4-85 (93)
114 2cpj_A Non-POU domain-containi 99.8 2.2E-18 7.7E-23 130.6 10.9 79 95-178 12-90 (99)
115 2ytc_A PRE-mRNA-splicing facto 99.8 2.4E-18 8.2E-23 126.5 10.5 78 93-175 7-85 (85)
116 2nlw_A Eukaryotic translation 99.8 6.8E-19 2.3E-23 135.2 7.8 82 95-177 12-100 (105)
117 2hgm_A HNRPF protein, heteroge 99.8 5.6E-19 1.9E-23 140.3 7.5 99 76-176 15-120 (126)
118 1x4g_A Nucleolysin TIAR; struc 99.8 3E-18 1E-22 132.2 11.5 79 96-179 23-101 (109)
119 1wel_A RNA-binding protein 12; 99.8 3.2E-19 1.1E-23 141.1 6.0 82 96-178 23-105 (124)
120 1nu4_A U1A RNA binding domain; 99.8 8.1E-19 2.8E-23 132.3 7.9 84 94-179 4-91 (97)
121 2e5j_A Methenyltetrahydrofolat 99.8 2.3E-18 7.8E-23 130.1 10.2 80 95-178 16-95 (97)
122 2cpd_A Apobec-1 stimulating pr 99.8 6.7E-18 2.3E-22 127.9 12.6 77 95-178 12-90 (99)
123 2la4_A Nuclear and cytoplasmic 99.8 2.1E-18 7.2E-23 131.1 9.6 77 95-176 24-100 (101)
124 2hvz_A Splicing factor, argini 99.8 2E-18 6.8E-23 131.2 8.9 76 99-178 1-76 (101)
125 2xnq_A Nuclear polyadenylated 99.8 6.9E-18 2.4E-22 127.8 11.8 77 94-177 18-95 (97)
126 1fj7_A Nucleolin RBD1, protein 99.8 2.8E-19 9.7E-24 136.0 4.0 83 95-179 14-97 (101)
127 1x4f_A Matrin 3; structural ge 99.8 1.3E-18 4.5E-23 135.3 7.9 80 95-179 22-104 (112)
128 2kvi_A Nuclear polyadenylated 99.8 3.4E-18 1.2E-22 129.0 9.5 77 95-178 7-84 (96)
129 2jvo_A Nucleolar protein 3; nu 99.8 5E-18 1.7E-22 131.2 10.5 77 95-178 28-104 (108)
130 3lqv_A PRE-mRNA branch site pr 99.8 5.3E-18 1.8E-22 131.9 10.7 82 95-178 5-86 (115)
131 2krb_A Eukaryotic translation 99.7 1.5E-18 5E-23 126.9 6.7 73 98-171 1-80 (81)
132 3beg_B Splicing factor, argini 99.7 2.9E-18 9.9E-23 133.9 8.8 76 95-176 13-93 (115)
133 3egn_A RNA-binding protein 40; 99.7 4.2E-18 1.4E-22 137.7 9.9 86 93-178 40-131 (143)
134 2lmi_A GRSF-1, G-rich sequence 99.7 9.7E-19 3.3E-23 134.8 5.8 83 94-177 7-92 (107)
135 4f02_A Polyadenylate-binding p 99.7 9.2E-18 3.1E-22 144.5 12.5 84 95-178 12-96 (213)
136 2dha_A FLJ20171 protein; RRM d 99.7 1.9E-18 6.4E-23 136.8 7.4 82 96-178 21-106 (123)
137 1whx_A Hypothetical protein ri 99.7 6E-18 2.1E-22 131.3 10.0 77 97-178 9-85 (111)
138 2hgn_A Heterogeneous nuclear r 99.7 6.8E-19 2.3E-23 142.2 4.7 81 96-178 44-124 (139)
139 1iqt_A AUF1, heterogeneous nuc 99.7 1.1E-18 3.9E-23 125.2 5.2 74 100-174 1-75 (75)
140 1fjc_A Nucleolin RBD2, protein 99.7 3.2E-18 1.1E-22 128.8 7.8 80 95-178 13-92 (96)
141 1wf1_A RNA-binding protein RAL 99.7 9.2E-18 3.1E-22 129.7 10.6 76 96-178 25-101 (110)
142 2e5g_A U6 snRNA-specific termi 99.7 1E-17 3.6E-22 125.7 10.6 78 95-178 5-83 (94)
143 2xs2_A Deleted in azoospermia- 99.7 3.3E-18 1.1E-22 130.2 7.6 82 95-178 6-87 (102)
144 2e44_A Insulin-like growth fac 99.7 9E-18 3.1E-22 126.3 9.5 81 95-178 12-93 (96)
145 1x5p_A Negative elongation fac 99.7 3.8E-17 1.3E-21 123.3 12.5 77 95-178 12-88 (97)
146 2lcw_A RNA-binding protein FUS 99.6 2.3E-19 7.9E-24 140.1 0.0 83 96-178 5-96 (116)
147 1wg1_A KIAA1579 protein, homol 99.7 1.2E-17 4.2E-22 123.9 9.0 77 96-178 3-79 (88)
148 2i2y_A Fusion protein consists 99.7 1.3E-17 4.4E-22 135.9 9.9 80 95-178 70-149 (150)
149 1fxl_A Paraneoplastic encephal 99.7 4E-17 1.4E-21 133.6 12.6 82 97-178 1-83 (167)
150 2diu_A KIAA0430 protein; struc 99.7 2.1E-17 7.3E-22 123.3 9.9 78 95-181 5-88 (96)
151 3md3_A Nuclear and cytoplasmic 99.7 5E-17 1.7E-21 132.9 12.4 82 94-175 83-165 (166)
152 2qfj_A FBP-interacting repress 99.7 4.2E-17 1.4E-21 139.4 12.4 84 96-179 123-207 (216)
153 1sjr_A Polypyrimidine tract-bi 99.7 4E-17 1.4E-21 134.8 11.1 81 95-178 43-125 (164)
154 2j8a_A Histone-lysine N-methyl 99.7 2.1E-17 7.2E-22 130.3 8.9 78 99-176 3-95 (136)
155 1b7f_A Protein (SXL-lethal pro 99.7 4.1E-17 1.4E-21 134.0 10.5 83 97-179 2-85 (168)
156 2cq2_A Hypothetical protein LO 99.7 3.4E-17 1.2E-21 127.6 8.9 80 94-178 21-107 (114)
157 3zzy_A Polypyrimidine tract-bi 99.7 9.2E-17 3.2E-21 127.9 10.9 79 96-178 26-107 (130)
158 1l3k_A Heterogeneous nuclear r 99.7 1.1E-16 3.7E-21 134.8 11.5 84 94-178 9-93 (196)
159 2dnl_A Cytoplasmic polyadenyla 99.7 9.2E-17 3.1E-21 125.0 10.1 81 94-177 4-88 (114)
160 3md3_A Nuclear and cytoplasmic 99.7 1.3E-16 4.4E-21 130.4 11.4 81 99-179 1-81 (166)
161 2yh0_A Splicing factor U2AF 65 99.7 1.5E-16 5E-21 134.2 12.1 84 95-178 111-195 (198)
162 2g4b_A Splicing factor U2AF 65 99.7 1.3E-16 4.6E-21 131.5 11.4 79 96-174 92-171 (172)
163 4f02_A Polyadenylate-binding p 99.7 1E-16 3.5E-21 137.9 10.7 81 97-178 102-182 (213)
164 2e5i_A Heterogeneous nuclear r 99.7 1.8E-16 6.3E-21 125.4 11.0 75 99-178 26-103 (124)
165 2hzc_A Splicing factor U2AF 65 99.7 1.1E-16 3.8E-21 117.9 9.0 71 96-172 4-85 (87)
166 3d2w_A TAR DNA-binding protein 99.7 7.4E-17 2.5E-21 120.2 8.1 76 95-178 8-85 (89)
167 3tyt_A Heterogeneous nuclear r 99.7 1.8E-16 6.2E-21 136.1 11.1 78 97-178 3-81 (205)
168 1l3k_A Heterogeneous nuclear r 99.7 2.3E-16 7.7E-21 132.8 11.5 83 96-179 102-185 (196)
169 2cjk_A Nuclear polyadenylated 99.7 8.3E-17 2.8E-21 132.1 8.3 80 97-177 86-166 (167)
170 2bz2_A Negative elongation fac 99.7 2.1E-16 7.1E-21 124.6 10.2 77 95-178 36-112 (121)
171 1wf0_A TDP-43, TAR DNA-binding 99.7 6.1E-17 2.1E-21 119.9 6.3 77 96-178 3-79 (88)
172 3nmr_A Cugbp ELAV-like family 99.7 3.5E-16 1.2E-20 129.0 11.3 80 96-175 93-175 (175)
173 1b7f_A Protein (SXL-lethal pro 99.7 4.9E-16 1.7E-20 127.4 12.1 80 95-174 86-168 (168)
174 2qfj_A FBP-interacting repress 99.7 2.9E-16 9.8E-21 134.2 10.3 82 97-178 27-109 (216)
175 2pe8_A Splicing factor 45; RRM 99.7 9.9E-16 3.4E-20 117.8 11.7 81 96-176 6-93 (105)
176 1fxl_A Paraneoplastic encephal 99.6 8.7E-16 3E-20 125.5 11.4 79 96-174 86-167 (167)
177 3nmr_A Cugbp ELAV-like family 99.6 8.9E-16 3E-20 126.6 11.2 83 97-179 2-90 (175)
178 2voo_A Lupus LA protein; RNA-b 99.6 8.2E-16 2.8E-20 130.8 11.2 79 97-176 108-186 (193)
179 3pgw_A U1-A; protein-RNA compl 99.6 1.1E-15 3.9E-20 136.3 11.9 83 94-178 5-91 (282)
180 1fje_B Nucleolin RBD12, protei 99.6 7.2E-16 2.4E-20 127.7 9.2 78 96-177 97-174 (175)
181 3u1l_A PRE-mRNA-splicing facto 99.6 6.1E-16 2.1E-20 135.5 8.7 81 94-179 130-231 (240)
182 2cjk_A Nuclear polyadenylated 99.6 7.6E-16 2.6E-20 126.3 8.0 79 97-177 2-81 (167)
183 2adc_A Polypyrimidine tract-bi 99.6 1.1E-15 3.7E-20 133.0 9.1 80 95-178 31-111 (229)
184 3smz_A Protein raver-1, ribonu 99.6 3E-15 1E-19 133.6 12.1 85 95-179 181-266 (284)
185 2dit_A HIV TAT specific factor 99.6 6.3E-15 2.2E-19 114.2 12.1 80 96-178 13-103 (112)
186 2ghp_A U4/U6 snRNA-associated 99.6 2.4E-15 8.1E-20 134.9 10.4 82 95-177 207-291 (292)
187 3tyt_A Heterogeneous nuclear r 99.6 3.4E-15 1.2E-19 128.1 9.7 78 96-174 121-204 (205)
188 3pgw_A U1-A; protein-RNA compl 99.6 6.1E-15 2.1E-19 131.5 11.5 77 95-175 204-281 (282)
189 3smz_A Protein raver-1, ribonu 99.6 1.1E-14 3.6E-19 130.1 12.7 83 96-178 93-176 (284)
190 1fje_B Nucleolin RBD12, protei 99.6 1.2E-15 4.3E-20 126.2 4.5 85 94-179 9-93 (175)
191 1qm9_A Polypyrimidine tract-bi 99.6 3.9E-15 1.3E-19 125.9 7.5 78 97-178 2-80 (198)
192 3sde_A Paraspeckle component 1 99.6 1.4E-14 4.8E-19 128.3 10.9 80 94-178 18-97 (261)
193 1qm9_A Polypyrimidine tract-bi 99.5 1.1E-14 3.9E-19 123.0 9.2 79 95-177 117-197 (198)
194 1jmt_A Splicing factor U2AF 35 99.5 3.5E-15 1.2E-19 114.4 5.1 72 103-174 20-103 (104)
195 2adc_A Polypyrimidine tract-bi 99.5 2.2E-14 7.4E-19 124.7 10.5 79 95-177 148-228 (229)
196 3v4m_A Splicing factor U2AF 65 99.5 2E-14 7E-19 110.4 9.0 81 96-176 3-96 (105)
197 3sde_A Paraspeckle component 1 99.5 3.1E-14 1E-18 126.2 11.2 83 96-178 94-180 (261)
198 2ghp_A U4/U6 snRNA-associated 99.5 2.2E-14 7.6E-19 128.5 10.0 82 97-178 116-198 (292)
199 2g4b_A Splicing factor U2AF 65 99.5 3.7E-14 1.3E-18 116.7 10.3 76 97-178 3-89 (172)
200 2yh0_A Splicing factor U2AF 65 99.5 4.4E-14 1.5E-18 118.9 9.9 76 97-178 3-89 (198)
201 3ue2_A Poly(U)-binding-splicin 99.5 1.2E-13 4E-18 108.4 9.9 80 97-176 19-108 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 5.1E-13 1.7E-17 101.6 12.2 76 98-179 10-92 (100)
203 3tht_A Alkylated DNA repair pr 99.4 2.1E-13 7.3E-18 125.3 9.7 77 94-175 14-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 3E-12 1E-16 99.6 10.5 79 96-177 5-93 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 5.8E-12 2E-16 98.7 9.4 83 91-178 11-97 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 1E-11 3.5E-16 91.8 8.5 75 96-178 5-87 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 1.2E-10 4.2E-15 86.4 6.9 73 95-175 12-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 2.5E-09 8.4E-14 92.1 11.7 95 82-176 108-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.6 1.7E-07 5.8E-12 71.1 9.3 73 95-172 18-95 (117)
210 1wey_A Calcipressin 1; structu 98.2 5.2E-06 1.8E-10 62.5 7.8 77 97-178 4-85 (104)
211 2dhx_A Poly (ADP-ribose) polym 98.1 7.8E-05 2.7E-09 55.9 12.5 75 95-177 5-84 (104)
212 1uw4_A UPF3X; nonsense mediate 97.9 0.00011 3.8E-09 54.2 9.7 76 99-174 2-85 (91)
213 1whv_A Poly(A)-specific ribonu 97.7 0.00016 5.4E-09 53.7 8.0 57 96-160 14-70 (100)
214 3ctr_A Poly(A)-specific ribonu 97.4 0.00016 5.3E-09 53.8 4.4 55 98-160 6-60 (101)
215 1wwh_A Nucleoporin 35, nucleop 97.3 0.00091 3.1E-08 51.6 7.8 73 95-174 21-94 (119)
216 2l08_A Regulator of nonsense t 97.0 0.00088 3E-08 49.7 5.3 78 97-174 8-93 (97)
217 3pq1_A Poly(A) RNA polymerase; 96.4 0.0022 7.4E-08 60.8 3.9 56 98-158 53-108 (464)
218 2kn4_A Immunoglobulin G-bindin 95.9 0.007 2.4E-07 48.3 4.2 35 127-162 2-36 (158)
219 3p3d_A Nucleoporin 53; structu 95.4 0.043 1.5E-06 42.8 7.0 77 97-175 6-97 (132)
220 2i2y_A Fusion protein consists 95.0 0.0066 2.2E-07 48.2 1.2 39 137-176 11-50 (150)
221 3d45_A Poly(A)-specific ribonu 93.1 0.27 9.2E-06 47.1 8.4 56 97-160 439-494 (507)
222 4eyt_A Telomerase associated p 86.3 4.3 0.00015 29.3 7.9 59 95-160 9-67 (129)
223 2g0c_A ATP-dependent RNA helic 81.4 3.1 0.0001 28.5 5.4 68 100-175 2-75 (76)
224 3fry_A Probable copper-exporti 68.2 16 0.00055 24.0 6.2 56 98-159 6-61 (73)
225 4f25_A Polyadenylate-binding p 64.1 1.4 4.9E-05 32.7 0.0 18 97-114 96-113 (115)
226 4e8u_A Putative uncharacterize 62.4 15 0.00051 29.7 5.8 50 99-150 13-73 (172)
227 3dxs_X Copper-transporting ATP 51.7 44 0.0015 21.5 6.1 56 99-159 4-63 (74)
228 4bby_A Alkyldihydroxyacetoneph 51.5 9.2 0.00031 37.5 3.4 55 105-159 350-408 (658)
229 1b34_A Protein (small nuclear 43.2 6.2 0.00021 29.9 0.5 8 8-15 75-82 (119)
230 3uly_B Charged multivesicular 41.1 17 0.00058 24.7 2.4 18 270-287 7-24 (69)
231 1yg0_A COP associated protein; 39.8 62 0.0021 19.6 5.6 55 100-159 4-61 (66)
232 4a4j_A Pacszia, cation-transpo 39.6 41 0.0014 21.2 4.3 55 99-158 4-61 (69)
233 2cu1_A Mitogen-activated prote 37.7 56 0.0019 23.9 4.8 66 105-178 23-89 (103)
234 3j21_T 50S ribosomal protein L 36.5 66 0.0022 22.7 5.0 55 102-158 26-82 (86)
235 3pgw_S U1-70K; protein-RNA com 35.6 3.2 0.00011 38.8 -2.7 14 115-128 9-22 (437)
236 2xmw_A PACS-N, cation-transpor 35.3 78 0.0027 19.5 6.3 56 99-159 5-63 (71)
237 2kt2_A Mercuric reductase; nme 34.9 80 0.0027 19.4 6.3 54 100-158 3-59 (69)
238 2w7a_A LINE-1 ORF1P; RNA-bindi 34.7 1E+02 0.0035 22.4 6.0 75 98-172 3-98 (100)
239 3pm9_A Putative oxidoreductase 33.5 42 0.0014 31.4 4.7 54 107-160 195-252 (476)
240 1wvf_A 4-cresol dehydrogenase 33.4 19 0.00066 34.0 2.4 44 114-157 217-262 (520)
241 1q8l_A Copper-transporting ATP 32.6 1.1E+02 0.0036 20.1 7.3 57 98-159 10-70 (84)
242 1cpz_A Protein (COPZ); copper 32.4 86 0.0029 19.0 7.3 55 99-158 2-60 (68)
243 2l3m_A Copper-ION-binding prot 31.1 95 0.0032 19.1 6.1 56 99-159 7-66 (71)
244 3ts2_A Protein LIN-28 homolog 30.2 5.8 0.0002 31.3 -1.6 29 112-147 1-29 (148)
245 1aw0_A Menkes copper-transport 29.8 91 0.0031 19.2 4.8 56 99-159 5-64 (72)
246 2ofg_X Zinc-transporting ATPas 29.8 1.5E+02 0.0051 21.0 6.9 56 99-159 10-69 (111)
247 3fut_A Dimethyladenosine trans 29.2 52 0.0018 28.3 4.3 30 98-128 110-139 (271)
248 1osd_A MERP, hypothetical prot 28.9 1E+02 0.0036 18.9 6.8 56 99-159 5-64 (72)
249 2lfv_A Protein DAMX; cell divi 34.9 12 0.00041 27.7 0.0 61 98-163 25-88 (106)
250 3bgu_A Ferredoxin-like protein 28.3 1.4E+02 0.0049 21.8 6.1 55 100-154 24-88 (116)
251 2g9o_A Copper-transporting ATP 28.0 91 0.0031 21.1 4.7 56 99-159 5-64 (90)
252 2okq_A Hypothetical protein YB 27.9 1.6E+02 0.0056 22.7 6.3 44 115-158 50-109 (141)
253 3lpe_A Putative transcription 27.7 1.4E+02 0.0046 21.0 5.6 34 125-162 40-73 (92)
254 3bb5_A Stress responsive alpha 27.6 1.8E+02 0.0063 21.4 6.7 57 99-155 22-90 (121)
255 3cjk_B Copper-transporting ATP 27.3 1.2E+02 0.004 19.0 6.2 55 100-159 5-63 (75)
256 1kvi_A Copper-transporting ATP 27.2 1.2E+02 0.0042 19.2 7.1 57 98-159 9-69 (79)
257 2yko_A LINE-1 ORF1P; RNA-bindi 26.5 2.3E+02 0.0078 23.9 7.5 77 97-173 51-148 (233)
258 1yjr_A Copper-transporting ATP 26.1 1.2E+02 0.0042 18.8 7.3 57 98-159 5-65 (75)
259 2kyz_A Heavy metal binding pro 24.9 72 0.0025 19.8 3.5 53 100-158 4-56 (67)
260 2qyc_A Ferredoxin-like protein 24.7 1.9E+02 0.0063 20.4 6.7 54 101-154 8-71 (103)
261 1fvq_A Copper-transporting ATP 24.4 1.3E+02 0.0044 18.5 4.8 55 100-159 5-62 (72)
262 2ew9_A Copper-transporting ATP 24.3 1.4E+02 0.0049 21.7 5.6 56 99-159 82-141 (149)
263 2uuu_A Alkyldihydroxyacetoneph 24.3 40 0.0014 32.5 2.8 54 107-160 282-339 (584)
264 3uzu_A Ribosomal RNA small sub 24.2 33 0.0011 29.7 2.0 34 98-131 114-147 (279)
265 1p6t_A Potential copper-transp 24.2 1.8E+02 0.0061 21.3 6.2 57 98-159 75-135 (151)
266 3ced_A Methionine import ATP-b 23.5 2E+02 0.0068 20.3 6.5 64 97-160 19-86 (98)
267 1y3j_A Copper-transporting ATP 23.2 99 0.0034 19.6 4.0 56 99-159 5-64 (77)
268 1mwy_A ZNTA; open-faced beta-s 23.1 1.4E+02 0.0049 18.5 7.7 56 99-159 5-62 (73)
269 2gpv_G Nuclear receptor corepr 22.7 38 0.0013 18.0 1.3 10 6-15 2-11 (26)
270 1qyr_A KSGA, high level kasuga 22.6 63 0.0021 27.3 3.5 29 99-127 91-119 (252)
271 2v94_A RPS24, 30S ribosomal pr 21.1 1.6E+02 0.0054 21.7 4.9 46 108-154 37-88 (107)
272 1opz_A Potential copper-transp 21.1 1.5E+02 0.0053 18.2 7.5 56 99-159 8-67 (76)
273 2e7g_A Putative ribosome-bindi 20.9 1.4E+02 0.0047 22.5 4.8 36 122-160 43-79 (129)
274 2ns6_A Mobilization protein A; 20.9 1.5E+02 0.0051 23.9 5.2 50 97-148 69-126 (185)
275 2i3t_B Spindle assembly checkp 20.7 46 0.0016 21.3 1.6 15 3-17 23-37 (54)
276 2qif_A Copper chaperone COPZ; 20.6 1.4E+02 0.0049 17.6 6.3 56 99-159 4-63 (69)
277 3u5e_X 60S ribosomal protein L 20.4 1.2E+02 0.0041 23.6 4.3 54 102-157 82-137 (142)
278 1xn9_A 30S ribosomal protein S 20.4 1.3E+02 0.0044 21.9 4.3 46 108-154 28-79 (101)
279 1vyi_A RNA polymerase alpha su 20.4 41 0.0014 24.3 1.5 16 4-19 44-59 (112)
280 2lxm_B Charged multivesicular 20.3 79 0.0027 20.5 2.7 18 270-287 19-36 (57)
281 4a17_R RPL23A, 60S ribosomal p 20.2 1.2E+02 0.0041 23.8 4.3 53 103-157 91-145 (150)
282 3ftd_A Dimethyladenosine trans 20.2 69 0.0024 26.9 3.2 30 99-128 96-125 (249)
No 1
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=100.00 E-value=1e-34 Score=244.88 Aligned_cols=154 Identities=45% Similarity=0.755 Sum_probs=121.9
Q ss_pred CCCCCCCCHHHHHHhccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCc
Q 022894 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARRGPLSNARPSSYTIAKSFRRTRNFPWQH 80 (290)
Q Consensus 1 m~~~ld~slddii~~~~~~~~~~~~~~~~rg~g~g~g~~~~~~~~~g~g~~r~~~~~~~r~~~y~~~~~~~~~~~~~~~~ 80 (290)
||++|||||||||+++++..+++ |++++.+ ++.++...+..|+++|.++. ..+..|+|
T Consensus 15 m~~~ld~sLDdii~~~r~~~r~~------r~~~~r~------------~~~~~~~~g~~r~~~y~~~~----~~~~~w~~ 72 (177)
T 2f3j_A 15 MADKMDMSLDDIIKLNRNQRRVN------RGGGPRR------------NRPAIARGGRNRPAPYSRPK----PLPDKWQH 72 (177)
T ss_dssp CCCSSSCCHHHHHHHHHTCCSCS------SSCCSSS------------SSCCCTTTSSTTTCCSSSCC----CCTTCSSC
T ss_pred hhhhhccCHHHHHhhcccCCCCC------CCCCCCC------------CCCCCCCCCcCCCCCCCCCc----Cccccccc
Confidence 89999999999999886543211 1110000 01111112245677888653 45889999
Q ss_pred hhhHHHhhhcCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022894 81 DLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (290)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (290)
|.|++.. .......+.++|||+|||+.+++++|+++|++||+|+.|.|+.++++.+++||||+|.+.++|++||+.||
T Consensus 73 d~~~~~~--~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~ln 150 (177)
T 2f3j_A 73 DLFDSGC--GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK 150 (177)
T ss_dssp SSSCSSC--CCCSSCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHST
T ss_pred ccccccc--CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhC
Confidence 9998765 22345677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeCCeeeEEEEecCCC
Q 022894 161 NVLLDGKPMKIEVVGTNA 178 (290)
Q Consensus 161 g~~l~G~~i~V~~a~~~~ 178 (290)
++.|+++.|+|+++....
T Consensus 151 g~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 151 GVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp TCBCSSSBCEEEEESSGG
T ss_pred CCEECCEEEEEEEecCCC
Confidence 999999999999997654
No 2
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.88 E-value=2.2e-22 Score=154.87 Aligned_cols=101 Identities=50% Similarity=0.881 Sum_probs=79.7
Q ss_pred CCCCCCCchhhHHHhhhcCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHH
Q 022894 73 TRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDA 152 (290)
Q Consensus 73 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A 152 (290)
..+..|+|++|..... ..+..++.++|||+|||+.+++++|+++|++||.|+.|.|+.++++++++||||+|.+.++|
T Consensus 6 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a 83 (107)
T 3ulh_A 6 QLPDKWQHDLFDSGFG--GGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADA 83 (107)
T ss_dssp --------------------CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHH
T ss_pred CCCcccccccccCCCC--CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHH
Confidence 4477899999887652 34556788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeCCeeeEEEEec
Q 022894 153 FAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 153 ~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
++||+.||+..|+|+.|+|+++.
T Consensus 84 ~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 84 LKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHhCCCEeCCcEEEEEEeC
Confidence 99999999999999999999985
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=153.49 Aligned_cols=81 Identities=33% Similarity=0.452 Sum_probs=78.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
..+++|||+|||+++|+++|+++|++||+|.+|.|+.|+ ++.++|||||+|.+.++|++||+.||+..|+|++|+|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 357899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cC
Q 022894 175 GT 176 (290)
Q Consensus 175 ~~ 176 (290)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 4
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.87 E-value=3.6e-23 Score=181.02 Aligned_cols=82 Identities=20% Similarity=0.253 Sum_probs=77.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccC--CeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIG--ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G--~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
..++|||+||+++||+++|+++|++|| .|++|.|+.|+ +++++|||||+|.+.++|++||+.||++.|+++.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 99999999998 999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+.+..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 87554
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=3.2e-21 Score=149.85 Aligned_cols=83 Identities=13% Similarity=0.184 Sum_probs=78.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
++.++|||+|||+++++++|+++|++||+|.+|.|++|+ +++++|||||+|.+.++|++||+.||+..|+|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999999999 8999999999999999999999999999999999999998
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 6543
No 6
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.86 E-value=3.3e-21 Score=152.36 Aligned_cols=105 Identities=47% Similarity=0.846 Sum_probs=93.9
Q ss_pred CCCCCCCchhhHHHhhhcCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHH
Q 022894 73 TRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDA 152 (290)
Q Consensus 73 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A 152 (290)
..+..|+|+.+++.. ...+.....++|||+|||+.+++++|+++|+.||.|+.|.|+.++++++++||||+|.+.++|
T Consensus 12 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A 89 (124)
T 2kt5_A 12 RDPDKWQHDLFDSGC--GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADA 89 (124)
T ss_dssp CCCCCCCCCCCCCCC--CCCCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHH
T ss_pred CCCccccccccccCC--CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHH
Confidence 346789998887654 233456788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeCCeeeEEEEecCCCC
Q 022894 153 FAALKRYNNVLLDGKPMKIEVVGTNAE 179 (290)
Q Consensus 153 ~~Ai~~lng~~l~G~~i~V~~a~~~~~ 179 (290)
++||+.||+..|+|+.|+|+++.+...
T Consensus 90 ~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 90 LKAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp HHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred HHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 999999999999999999999987654
No 7
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=9.9e-21 Score=155.49 Aligned_cols=85 Identities=29% Similarity=0.378 Sum_probs=80.2
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
..++.++|||.|||+++|+++|+++|++||+|+.|.|+.++ ++.+++||||+|.+.++|++||+.||++.|+++.|+|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34578999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EecCCC
Q 022894 173 VVGTNA 178 (290)
Q Consensus 173 ~a~~~~ 178 (290)
++.+..
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 998644
No 8
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=9.9e-21 Score=139.91 Aligned_cols=82 Identities=20% Similarity=0.345 Sum_probs=76.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
.+.++|||+|||+++++++|+++|+.||.|.+|.|+.++ ++.+++||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 467899999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred cCC
Q 022894 175 GTN 177 (290)
Q Consensus 175 ~~~ 177 (290)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 865
No 9
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=141.51 Aligned_cols=83 Identities=28% Similarity=0.474 Sum_probs=79.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
++.++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||++.|+++.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 478999999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 8765
No 10
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=141.67 Aligned_cols=86 Identities=16% Similarity=0.310 Sum_probs=80.3
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
+...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+ ||++.|+++.|+|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 345678999999999999999999999999999999999998 89999999999999999999998 9999999999999
Q ss_pred EEecCCCC
Q 022894 172 EVVGTNAE 179 (290)
Q Consensus 172 ~~a~~~~~ 179 (290)
+++.++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2dgs_A 84 KRAEPRDS 91 (99)
T ss_dssp EECCCCCC
T ss_pred EECCCCcc
Confidence 99987654
No 11
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=141.96 Aligned_cols=86 Identities=23% Similarity=0.368 Sum_probs=81.2
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
...+.++|||+|||+++++++|+++|+.||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||++.|+++.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34578999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 022894 173 VVGTNAE 179 (290)
Q Consensus 173 ~a~~~~~ 179 (290)
++.++..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9987653
No 12
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=2e-20 Score=145.84 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=80.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.++.++|||+|||+++++++|+++|+.||.|+.|.|+.++ ++.+++||||+|.+.++|++||+.||++.|+++.|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 022894 174 VGTNAE 179 (290)
Q Consensus 174 a~~~~~ 179 (290)
+.++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 987653
No 13
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=3.2e-21 Score=144.62 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=75.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccC-CeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhC-CceeCCeeeEEEEe
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYN-NVLLDGKPMKIEVV 174 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G-~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~ln-g~~l~G~~i~V~~a 174 (290)
+++|||+|||+++|+++|+++|++|| +|++|.|+.|+ ++.++|||||+|.+.++|++||+.++ +..|+|++|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 89999999998 89999999999999999999999875 57899999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.+++
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8765
No 14
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=142.56 Aligned_cols=86 Identities=21% Similarity=0.381 Sum_probs=81.0
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
..++.++|||.|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||++.|+++.|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34578999999999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 022894 173 VVGTNAE 179 (290)
Q Consensus 173 ~a~~~~~ 179 (290)
++.+...
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9987653
No 15
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=144.51 Aligned_cols=86 Identities=24% Similarity=0.336 Sum_probs=80.9
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
+..++.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||++.|+++.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345678999999999999999999999999999999999998 7999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 022894 172 EVVGTNA 178 (290)
Q Consensus 172 ~~a~~~~ 178 (290)
+++.+..
T Consensus 88 ~~a~~~~ 94 (103)
T 2dnm_A 88 QVARYGR 94 (103)
T ss_dssp EECSSCC
T ss_pred EECCcCC
Confidence 9998665
No 16
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.2e-20 Score=142.72 Aligned_cols=84 Identities=25% Similarity=0.375 Sum_probs=80.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.++.++|||+|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||++.|+++.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4568999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+.++.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98765
No 17
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3e-20 Score=141.15 Aligned_cols=84 Identities=21% Similarity=0.378 Sum_probs=79.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
..+.++|||+|||+++++++|+++|+.||.|..|.|+.++++++++||||+|.+.++|++||+.||++.|+++.|+|+++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.++.
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8765
No 18
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=3.8e-20 Score=135.55 Aligned_cols=81 Identities=21% Similarity=0.392 Sum_probs=77.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
+++|||+|||+++++++|+++|+.||+|.+|.|+.++ ++.+++||||+|.+.++|++|++.||+..|+|+.|+|+++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 4689999999999999999999999999999999997 899999999999999999999999999999999999999987
Q ss_pred CC
Q 022894 177 NA 178 (290)
Q Consensus 177 ~~ 178 (290)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 19
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=146.15 Aligned_cols=87 Identities=29% Similarity=0.486 Sum_probs=81.2
Q ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeE
Q 022894 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (290)
Q Consensus 92 ~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~ 170 (290)
+...+..++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445678999999999999999999999999999999999997 899999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 022894 171 IEVVGTNA 178 (290)
Q Consensus 171 V~~a~~~~ 178 (290)
|+++.++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998764
No 20
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2e-20 Score=142.51 Aligned_cols=85 Identities=22% Similarity=0.309 Sum_probs=80.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
..+.++|||+|||+++++++|+++|+.||+|+.|.|+.++ ++.+++||||+|.+.++|++||+.||++.|+++.|+|++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 4578999999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 022894 174 VGTNAE 179 (290)
Q Consensus 174 a~~~~~ 179 (290)
+.+...
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987653
No 21
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=8.4e-21 Score=143.67 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=76.2
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCC--eeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCc----eeCC
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGE--LKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNV----LLDG 166 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~--i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~----~l~G 166 (290)
....-.||||+|||+++|+++|+++|++||. |.+|.|+.|+ +++++|||||+|.+.++|++||+.||+. .|+|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3456689999999999999999999999995 6689999998 8999999999999999999999999986 5999
Q ss_pred eeeEEEEecC
Q 022894 167 KPMKIEVVGT 176 (290)
Q Consensus 167 ~~i~V~~a~~ 176 (290)
++|.|+||++
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999874
No 22
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3e-20 Score=142.30 Aligned_cols=85 Identities=24% Similarity=0.349 Sum_probs=80.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||++.|+++.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34578999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EecCCC
Q 022894 173 VVGTNA 178 (290)
Q Consensus 173 ~a~~~~ 178 (290)
++.+..
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 998765
No 23
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=7.1e-20 Score=142.60 Aligned_cols=85 Identities=20% Similarity=0.373 Sum_probs=80.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
....++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||++.|+++.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4568999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 022894 174 VGTNAE 179 (290)
Q Consensus 174 a~~~~~ 179 (290)
+.+...
T Consensus 92 a~~~~~ 97 (115)
T 2dgo_A 92 ATRKPP 97 (115)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 987764
No 24
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=2.5e-20 Score=137.15 Aligned_cols=81 Identities=23% Similarity=0.346 Sum_probs=77.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3578999999999999999999999999999999999986 889999999999999999999999999999999999998
Q ss_pred ec
Q 022894 174 VG 175 (290)
Q Consensus 174 a~ 175 (290)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 25
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.2e-20 Score=139.41 Aligned_cols=82 Identities=29% Similarity=0.376 Sum_probs=78.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.++.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|++++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4568999999999999999999999999999999999998 789999999999999999999999999999999999999
Q ss_pred ecC
Q 022894 174 VGT 176 (290)
Q Consensus 174 a~~ 176 (290)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 26
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-19 Score=141.06 Aligned_cols=84 Identities=27% Similarity=0.446 Sum_probs=79.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
.++.++|||+|||+++++++|+++|++||.|++|.|+.++++++++||||+|.+.++|++||+.||++.|+++.|+|+++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
....
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7544
No 27
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.9e-20 Score=140.01 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=79.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEE-EEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY-AIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v-~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.+.++|||+|||+++++++|+++|+.||.|..| .|+.++ ++.+++||||+|.+.++|++||+.||+..|+++.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 468999999999999999999999999999999 999996 999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+.+..
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 98765
No 28
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=139.39 Aligned_cols=81 Identities=27% Similarity=0.401 Sum_probs=77.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.++.++|||+|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+++.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 4568999999999999999999999999999999999998 789999999999999999999999999999999999999
Q ss_pred ec
Q 022894 174 VG 175 (290)
Q Consensus 174 a~ 175 (290)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 29
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=6.7e-20 Score=140.35 Aligned_cols=84 Identities=20% Similarity=0.332 Sum_probs=79.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC---eeeEEE
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG---KPMKIE 172 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G---~~i~V~ 172 (290)
++.++|||+|||+++++++|+++|+.||.|+.|.|+.++++.+++||||+|.+.++|++||+.||+..|.+ +.|+|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred EecCCCC
Q 022894 173 VVGTNAE 179 (290)
Q Consensus 173 ~a~~~~~ 179 (290)
++.+...
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987664
No 30
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.1e-20 Score=142.85 Aligned_cols=86 Identities=20% Similarity=0.382 Sum_probs=80.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhC------CceeCC
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYN------NVLLDG 166 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~ln------g~~l~G 166 (290)
...+.++|||+|||+++++++|+++|+.||+|..|.|+.++ ++.+++||||+|.+.++|++||+.|| ++.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34578999999999999999999999999999999999998 89999999999999999999999999 999999
Q ss_pred eeeEEEEecCCCC
Q 022894 167 KPMKIEVVGTNAE 179 (290)
Q Consensus 167 ~~i~V~~a~~~~~ 179 (290)
+.|+|+++.++..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999987653
No 31
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.8e-20 Score=141.98 Aligned_cols=85 Identities=28% Similarity=0.436 Sum_probs=80.1
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
...+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||++.|+|+.|+|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EecCCC
Q 022894 173 VVGTNA 178 (290)
Q Consensus 173 ~a~~~~ 178 (290)
++.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998764
No 32
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=7.1e-20 Score=143.41 Aligned_cols=83 Identities=22% Similarity=0.360 Sum_probs=79.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
+..++|||+|||+++++++|+++|++||.|+.|.|+.++++.+++||||+|.+.++|++||+.||+..|+++.|+|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 022894 176 TNA 178 (290)
Q Consensus 176 ~~~ 178 (290)
+..
T Consensus 85 ~~~ 87 (116)
T 2fy1_A 85 KPS 87 (116)
T ss_dssp CSS
T ss_pred CCC
Confidence 655
No 33
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=3.5e-20 Score=144.82 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=75.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
..++|||+|||+++++++|+++|++||.|.+|.|+.|+. .++|||||+|.+.++|++||+.||++.|+|+.|+|+++.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 467999999999999999999999999999999999863 3799999999999999999999999999999999999876
Q ss_pred CC
Q 022894 177 NA 178 (290)
Q Consensus 177 ~~ 178 (290)
+.
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 55
No 34
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=3.8e-20 Score=139.07 Aligned_cols=82 Identities=24% Similarity=0.411 Sum_probs=77.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
.++.++|||.|||+.+++++|+++|++||+|..|.|+.++++.+++||||+|.+.++|++||+.||++.|+++.|+|+++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 45679999999999999999999999999999999999998999999999999999999999999999999999999987
Q ss_pred cC
Q 022894 175 GT 176 (290)
Q Consensus 175 ~~ 176 (290)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 35
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=7e-21 Score=142.18 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=71.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccC--CeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIG--ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G--~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
.+|||+|||+++|+++|+++|+.|| .|.+|.|+.|+ +++++|||||+|.+.++|++||+.||+..|+|+.|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999998 99999999999999999999999999999999999999998
Q ss_pred CCCC
Q 022894 176 TNAE 179 (290)
Q Consensus 176 ~~~~ 179 (290)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7654
No 36
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-19 Score=138.41 Aligned_cols=84 Identities=20% Similarity=0.392 Sum_probs=78.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
..+.++|||+|||+++++++|+++|+.||.|..|.|+.++.. +++||||+|.+.++|++||+.||++.|+++.|+|+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 456899999999999999999999999999999999998754 8999999999999999999999999999999999999
Q ss_pred cCCCC
Q 022894 175 GTNAE 179 (290)
Q Consensus 175 ~~~~~ 179 (290)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2cq3_A 91 TARVM 95 (103)
T ss_dssp CSSCC
T ss_pred ccCCC
Confidence 87764
No 37
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=5.2e-20 Score=137.54 Aligned_cols=85 Identities=22% Similarity=0.352 Sum_probs=79.1
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
++.++.++|||+|||+++++++|+++|++||+|..|.|+.+ ++.+++||||+|.+.++|++||+.||+..|+++.|+|+
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999874 78899999999999999999999999999999999999
Q ss_pred EecCCC
Q 022894 173 VVGTNA 178 (290)
Q Consensus 173 ~a~~~~ 178 (290)
++.+..
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 998765
No 38
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=5.6e-20 Score=138.73 Aligned_cols=83 Identities=19% Similarity=0.313 Sum_probs=79.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
++++|||+|||+++++++|+++|++||.|.+|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+|+.|+|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999998 89999999999999999999999999999999999999998
Q ss_pred CCCC
Q 022894 176 TNAE 179 (290)
Q Consensus 176 ~~~~ 179 (290)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7663
No 39
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=6.1e-20 Score=139.31 Aligned_cols=83 Identities=23% Similarity=0.433 Sum_probs=78.6
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeE--------EEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCce
Q 022894 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR--------YAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVL 163 (290)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~--------v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~ 163 (290)
++..+.++|||+|||+++++++|+++|++||.|.. |.|+.++ +++++|||||+|.+.++|++||+.||+..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 45567899999999999999999999999999999 9999997 89999999999999999999999999999
Q ss_pred eCCeeeEEEEec
Q 022894 164 LDGKPMKIEVVG 175 (290)
Q Consensus 164 l~G~~i~V~~a~ 175 (290)
|+|+.|+|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 40
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6e-20 Score=140.24 Aligned_cols=84 Identities=24% Similarity=0.443 Sum_probs=79.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
..+.++|||+|||+++++++|+++|+.||.|..|.|+.+ ++.+++||||+|.+.++|++||+.||++.|+++.|+|+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 347899999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 022894 175 GTNAE 179 (290)
Q Consensus 175 ~~~~~ 179 (290)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2d9p_A 91 QRKEE 95 (103)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 87653
No 41
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.4e-20 Score=140.87 Aligned_cols=86 Identities=26% Similarity=0.357 Sum_probs=80.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeC-C-CCCCceEEEEEecCHHHHHHHHHHh-CCceeCCeeeE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-K-NGRPSGSAEVVYARRSDAFAALKRY-NNVLLDGKPMK 170 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d-~-tg~~kG~afV~F~~~~~A~~Ai~~l-ng~~l~G~~i~ 170 (290)
.....++|||+|||+++++++|+++|+.||.|..|.|+.+ + ++.+++||||+|.+.++|++||+.| |++.|+++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3457899999999999999999999999999999999999 5 8999999999999999999999999 99999999999
Q ss_pred EEEecCCCC
Q 022894 171 IEVVGTNAE 179 (290)
Q Consensus 171 V~~a~~~~~ 179 (290)
|+++.++..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987653
No 42
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=3.2e-20 Score=146.90 Aligned_cols=86 Identities=28% Similarity=0.432 Sum_probs=80.8
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
......++|||.|||+++|+++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||++.|+++.|+|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 445678899999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 022894 172 EVVGTNA 178 (290)
Q Consensus 172 ~~a~~~~ 178 (290)
+++.+..
T Consensus 97 ~~a~~~~ 103 (126)
T 3ex7_B 97 DWCFVRG 103 (126)
T ss_dssp EESEESS
T ss_pred EEecCCC
Confidence 9998654
No 43
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=5.6e-20 Score=141.03 Aligned_cols=85 Identities=19% Similarity=0.388 Sum_probs=79.7
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCcee---CCeee
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLL---DGKPM 169 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l---~G~~i 169 (290)
...+.++|||+|||+++++++|+++|++||+|.+|.|+.++ ++++++||||+|.+.++|++||+.||+..+ +++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 34578999999999999999999999999999999999998 899999999999999999999999999998 89999
Q ss_pred EEEEecCCC
Q 022894 170 KIEVVGTNA 178 (290)
Q Consensus 170 ~V~~a~~~~ 178 (290)
+|+++.+..
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999998765
No 44
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.4e-20 Score=138.63 Aligned_cols=84 Identities=23% Similarity=0.344 Sum_probs=79.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCee-EEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCee----
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELK-RYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP---- 168 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~-~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~---- 168 (290)
..+.++|||+|||+++++++|+++|++||+|. .|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45789999999999999999999999999999 99999998 8999999999999999999999999999999999
Q ss_pred eEEEEecCCC
Q 022894 169 MKIEVVGTNA 178 (290)
Q Consensus 169 i~V~~a~~~~ 178 (290)
|+|+++.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999987654
No 45
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=141.13 Aligned_cols=83 Identities=25% Similarity=0.370 Sum_probs=78.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
..+.++|||.|||+++++++|+++|++||+|+.|.|+.++ ++++++||||+|.+.++|++||+.||+ .|+++.|+|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 4568999999999999999999999999999999999998 899999999999999999999999998 89999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+.+..
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97654
No 46
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=7.4e-20 Score=141.40 Aligned_cols=86 Identities=26% Similarity=0.427 Sum_probs=80.6
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
+...+.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+|+.|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345577899999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 022894 172 EVVGTNA 178 (290)
Q Consensus 172 ~~a~~~~ 178 (290)
+++.++.
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9998764
No 47
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=1.3e-19 Score=138.49 Aligned_cols=82 Identities=21% Similarity=0.361 Sum_probs=77.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
..+.++|||+|||+++++++|+++|+.|+ |..|.|+.++ +++++|||||+|.+.++|++|| .||++.|+++.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45689999999999999999999999996 9999999998 8999999999999999999999 9999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98765
No 48
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.6e-20 Score=139.69 Aligned_cols=83 Identities=19% Similarity=0.310 Sum_probs=77.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-C-CCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N-GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-t-g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
..+.++|||.|||+++++++|+++|+.|| |..|.|+.++ + +++++||||+|.+.++|++|| .||+..|+++.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34679999999999999999999999999 9999999998 5 899999999999999999999 999999999999999
Q ss_pred EecCCCC
Q 022894 173 VVGTNAE 179 (290)
Q Consensus 173 ~a~~~~~ 179 (290)
++.++..
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987653
No 49
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9e-20 Score=137.91 Aligned_cols=83 Identities=25% Similarity=0.435 Sum_probs=77.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCC--C--CCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN--G--RPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~t--g--~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
.+.++|||+|||+++++++|+++|+.||+|..|.|+.++. + .+++||||+|.+.++|++||+.||++.|+++.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4689999999999999999999999999999999998763 3 88999999999999999999999999999999999
Q ss_pred EEecCCC
Q 022894 172 EVVGTNA 178 (290)
Q Consensus 172 ~~a~~~~ 178 (290)
+++.+..
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9998765
No 50
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=8.4e-20 Score=139.58 Aligned_cols=85 Identities=21% Similarity=0.333 Sum_probs=80.1
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhc-cCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCce-eCCeeeEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSE-IGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL-LDGKPMKI 171 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~-~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~-l~G~~i~V 171 (290)
...+.++|||+|||+++++++|+++|+. ||.|..|.|+.++++.+++||||+|.+.++|++||+.||+.. |+++.|+|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 3457899999999999999999999999 999999999999999999999999999999999999999999 99999999
Q ss_pred EEecCCC
Q 022894 172 EVVGTNA 178 (290)
Q Consensus 172 ~~a~~~~ 178 (290)
+++.+..
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9997665
No 51
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=136.70 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=76.9
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHH----HHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeee
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~----~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i 169 (290)
+....++|||+|||+++++++|+ ++|++||+|++|.|+.++.. ++||||+|.+.++|++||+.||+..|+|+.|
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34567899999999999999999 99999999999999998844 8899999999999999999999999999999
Q ss_pred EEEEecCCC
Q 022894 170 KIEVVGTNA 178 (290)
Q Consensus 170 ~V~~a~~~~ 178 (290)
+|+++.+..
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999998665
No 52
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=141.31 Aligned_cols=85 Identities=28% Similarity=0.484 Sum_probs=79.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCee--------EEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeC
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELK--------RYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~--------~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 165 (290)
....++|||+|||+++++++|+++|+.||.|. .|.|+.++ ++++++||||+|.+.++|++||+.||++.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45689999999999999999999999999999 69999997 8999999999999999999999999999999
Q ss_pred CeeeEEEEecCCCC
Q 022894 166 GKPMKIEVVGTNAE 179 (290)
Q Consensus 166 G~~i~V~~a~~~~~ 179 (290)
++.|+|+++.+...
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999987653
No 53
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-19 Score=133.84 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=78.4
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.....++|||+|||+++++++|+++|+.| .|..|.|+.+.+++++|||||+|.+.++|++||+ ||+..|+++.|+|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 34578999999999999999999999999 9999999999999999999999999999999999 999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+.+.+
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98765
No 54
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.9e-19 Score=136.44 Aligned_cols=83 Identities=30% Similarity=0.292 Sum_probs=77.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
....++|||+|||+.+++++|+++|+.||.|+.|.|+.++.. +++||||+|.+.++|++||+.||++.|+++.|+|+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 456899999999999999999999999999999999998743 6899999999999999999999999999999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.+..
T Consensus 91 ~~~~ 94 (103)
T 2cqi_A 91 TTPS 94 (103)
T ss_dssp CCTT
T ss_pred CCCc
Confidence 8755
No 55
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=144.81 Aligned_cols=85 Identities=21% Similarity=0.296 Sum_probs=80.3
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
.....++|||+|||+++++++|+++|+.||+|++|.|+.++ ++++++||||+|.+.++|++||+.||+..|+++.|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred EecCCC
Q 022894 173 VVGTNA 178 (290)
Q Consensus 173 ~a~~~~ 178 (290)
++.+..
T Consensus 118 ~a~~~~ 123 (139)
T 1u6f_A 118 LAASGH 123 (139)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998765
No 56
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=134.29 Aligned_cols=82 Identities=27% Similarity=0.359 Sum_probs=76.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCC-CceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGR-PSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~-~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
..++|||+|||+++++++|+++|++||.|..|.|+.++ ++. +++||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 57899999999999999999999999999999999887 444 8999999999999999999999999999999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 57
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=6.4e-20 Score=138.74 Aligned_cols=83 Identities=22% Similarity=0.235 Sum_probs=77.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.+..++|||+|||+++++++|+++|+.||.|..+.++.++ ++++++||||+|.+.++|++||+.||+..|+++.|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4467899999999999999999999999999988777776 899999999999999999999999999999999999999
Q ss_pred ecCC
Q 022894 174 VGTN 177 (290)
Q Consensus 174 a~~~ 177 (290)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 58
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=8.9e-20 Score=139.76 Aligned_cols=84 Identities=23% Similarity=0.268 Sum_probs=79.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.+..++|||+|||+++++++|+++|+.||+|..|.|+.++ ++.+++||||+|.+.++|++||+. |++.|+++.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 4578999999999999999999999999999999999997 899999999999999999999988 99999999999999
Q ss_pred ecCCCC
Q 022894 174 VGTNAE 179 (290)
Q Consensus 174 a~~~~~ 179 (290)
+.++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 987653
No 59
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=8e-20 Score=145.87 Aligned_cols=84 Identities=30% Similarity=0.379 Sum_probs=79.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.++.++|||.|||+++++++|+++|+.||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+|++|+|++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4578999999999999999999999999999999999998 889999999999999999999999999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+.++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 97654
No 60
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.6e-19 Score=138.17 Aligned_cols=79 Identities=20% Similarity=0.361 Sum_probs=73.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC-----ee
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG-----KP 168 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G-----~~ 168 (290)
+....++|||.|||+++++++|+++|++||+|+.|.|+.+ +||||+|.+.++|++||+.||++.|++ +.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 3456899999999999999999999999999999999865 899999999999999999999999999 99
Q ss_pred eEEEEecCCC
Q 022894 169 MKIEVVGTNA 178 (290)
Q Consensus 169 i~V~~a~~~~ 178 (290)
|+|+++.++.
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999998754
No 61
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=3e-19 Score=132.02 Aligned_cols=80 Identities=21% Similarity=0.392 Sum_probs=74.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+ +++..|+|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34578999999999999999999999999999999999998 89999999999999999999995 58889999999998
Q ss_pred Ee
Q 022894 173 VV 174 (290)
Q Consensus 173 ~a 174 (290)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 62
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1e-19 Score=142.36 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=76.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.+..++|||+|||+++++++|+++|++||.|.+|.|+.++ ++++++||||+|.+.++|++||+.||++.|+++.|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4567999999999999999999999999999999999997 899999999999999999999999999999999999998
Q ss_pred ec
Q 022894 174 VG 175 (290)
Q Consensus 174 a~ 175 (290)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 63
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=139.25 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=73.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCC--ceeCCeeeEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKIE 172 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng--~~l~G~~i~V~ 172 (290)
.++.++|||+|||+++|+++|+++|++||.|++|.|+.+ +|||||+|.+.++|++||+.|++ .+|+|++|.|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 457899999999999999999999999999999999865 79999999999999999998864 78999999999
Q ss_pred EecCCCC
Q 022894 173 VVGTNAE 179 (290)
Q Consensus 173 ~a~~~~~ 179 (290)
+++++..
T Consensus 88 ~A~~~~~ 94 (105)
T 1sjq_A 88 FSNHKEL 94 (105)
T ss_dssp CCSSSSC
T ss_pred EcCCCCC
Confidence 9987654
No 64
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=3.2e-20 Score=141.45 Aligned_cols=81 Identities=19% Similarity=0.225 Sum_probs=77.3
Q ss_pred CCCEEEEeCCCC------CCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCC-ee
Q 022894 97 VGTKLYVSNLHP------GVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG-KP 168 (290)
Q Consensus 97 ~~~~l~V~nL~~------~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G-~~ 168 (290)
..++|||+|||+ ++++++|+++|++||.|.+|.|+.++ |++++|||||+|.+.++|++||+.||++.|++ +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999 79999999999999999999999999999999 99
Q ss_pred eEEEEecCC
Q 022894 169 MKIEVVGTN 177 (290)
Q Consensus 169 i~V~~a~~~ 177 (290)
|+|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998753
No 65
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=2.6e-19 Score=132.78 Aligned_cols=79 Identities=27% Similarity=0.497 Sum_probs=76.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
.++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++|+ .||+..|+|+.|+|+++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 5899999999999999999999999999999999998 9999999999999999999999 9999999999999999876
Q ss_pred C
Q 022894 177 N 177 (290)
Q Consensus 177 ~ 177 (290)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 66
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=5.4e-20 Score=138.26 Aligned_cols=81 Identities=22% Similarity=0.259 Sum_probs=74.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
++.++|||.|||+++++++|+++|++||.|..+.++.++ ++++++||||+|.+.++|++||+.||++.|+++.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 456999999999999999999999999999988888877 8899999999999999999999999999999999999987
Q ss_pred cC
Q 022894 175 GT 176 (290)
Q Consensus 175 ~~ 176 (290)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 67
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.8e-19 Score=135.18 Aligned_cols=84 Identities=19% Similarity=0.309 Sum_probs=77.9
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
...+.++|||.|||+++++++|+++|+.||+|+.|.|+.++ ++.++|||||+|.+.++|++||+ +++.|+|+.|.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34567999999999999999999999999999999999998 89999999999999999999998 4789999999999
Q ss_pred EecCCCC
Q 022894 173 VVGTNAE 179 (290)
Q Consensus 173 ~a~~~~~ 179 (290)
++.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9987764
No 68
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.6e-19 Score=136.74 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=75.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
..+.++|||.|||+++++++|+++|++||.|+.|.|..+ +.+++||||+|.+.++|++||+.||++.|+++.|+|+++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 346799999999999999999999999999999988654 457899999999999999999999999999999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
++..
T Consensus 97 ~~~~ 100 (109)
T 1x4a_A 97 RSGR 100 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 7654
No 69
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=147.35 Aligned_cols=82 Identities=20% Similarity=0.329 Sum_probs=76.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccC--CeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIG--ELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G--~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
..++|||+|||+++++++|+++|+.|| .|.+|.|+.|+ +++++|||||+|.+.++|++||+.||++.|+|+.|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 99999999998 999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+.+..
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 97543
No 70
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=3.5e-19 Score=135.61 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=72.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCce--eCCeeeEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVL--LDGKPMKI 171 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~--l~G~~i~V 171 (290)
..+++++|||+|||+.+|+++|+++|++||.|.+|.|+. .++||||+|.+.++|.+||+.||+.. |.|++|.|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 345789999999999999999999999999999999984 47999999999999999999999865 88999999
Q ss_pred EEecCCC
Q 022894 172 EVVGTNA 178 (290)
Q Consensus 172 ~~a~~~~ 178 (290)
++++.+.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998653
No 71
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=6.2e-19 Score=167.79 Aligned_cols=84 Identities=24% Similarity=0.431 Sum_probs=79.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
.+.++|||+|||+.||+++|+++|++||.|+.|.|+.++ ++.++|||||+|.+.++|++||+.||++.|+|+.|+|+++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 022894 175 GTNAE 179 (290)
Q Consensus 175 ~~~~~ 179 (290)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 86653
No 72
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.8e-20 Score=139.65 Aligned_cols=84 Identities=19% Similarity=0.512 Sum_probs=79.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
...++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 356899999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 022894 175 GTNAE 179 (290)
Q Consensus 175 ~~~~~ 179 (290)
.+...
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 87653
No 73
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-19 Score=138.03 Aligned_cols=82 Identities=24% Similarity=0.360 Sum_probs=75.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
....++|||+|||+++|+++|+++|+.||. ++|.|+.|++++++|||||+|.+.++|++|| .+|++.|+++.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 346789999999999999999999999995 5999999999999999999999999999999 57999999999999988
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.+..
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 74
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6e-19 Score=131.44 Aligned_cols=80 Identities=24% Similarity=0.349 Sum_probs=74.2
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
+..++.++|||+|||+++++++|+++|++||+|..|.|+ ++||||+|.+.++|++||+.||+..|+++.|+|+
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 345678999999999999999999999999999999998 6899999999999999999999999999999999
Q ss_pred EecCCCC
Q 022894 173 VVGTNAE 179 (290)
Q Consensus 173 ~a~~~~~ 179 (290)
++.+...
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9987653
No 75
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=5.5e-19 Score=146.58 Aligned_cols=85 Identities=26% Similarity=0.431 Sum_probs=79.7
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
...+.++|||.|||+.+++++|+++|++||.|..|.|+.++ ++.+++||||+|.+.++|++||+.||++.|+|+.|.|+
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred EecCCC
Q 022894 173 VVGTNA 178 (290)
Q Consensus 173 ~a~~~~ 178 (290)
|+.+..
T Consensus 148 ~a~~~~ 153 (165)
T 1rk8_A 148 WCFVKG 153 (165)
T ss_dssp ESEECC
T ss_pred EecCCC
Confidence 998765
No 76
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-19 Score=137.68 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=75.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
...++|||+|||+++|+++|+++|++||+|.+|.|+.++.+.++|||||+|.+.++|++||+ +|++.|+|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 35689999999999999999999999999999999999889999999999999999999998 89999999999999876
Q ss_pred C
Q 022894 176 T 176 (290)
Q Consensus 176 ~ 176 (290)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 77
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.9e-19 Score=136.99 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=78.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCC-eeEEEEE-eCC-CCCCceEEEEEecCHHHHHHHHHHhC--CceeCCeee
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGE-LKRYAIH-FDK-NGRPSGSAEVVYARRSDAFAALKRYN--NVLLDGKPM 169 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~-i~~v~i~-~d~-tg~~kG~afV~F~~~~~A~~Ai~~ln--g~~l~G~~i 169 (290)
..+.++|||+|||+++++++|+++|+.||. |.+|.|+ .++ ++.+++||||+|.+.++|++||+.|| ++.|+|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346799999999999999999999999998 9999998 677 78999999999999999999999996 599999999
Q ss_pred EEEEecCCCC
Q 022894 170 KIEVVGTNAE 179 (290)
Q Consensus 170 ~V~~a~~~~~ 179 (290)
+|+++.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 78
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=1e-18 Score=133.57 Aligned_cols=80 Identities=26% Similarity=0.375 Sum_probs=74.0
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
+...+.++|||.|||+++|+++|+++|++||.|+.|.|+ ++||||+|.+.++|++||+.||++.|+++.|+|+
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 345678999999999999999999999999999999887 5699999999999999999999999999999999
Q ss_pred EecCCCC
Q 022894 173 VVGTNAE 179 (290)
Q Consensus 173 ~a~~~~~ 179 (290)
++.+...
T Consensus 79 ~a~~~~~ 85 (103)
T 2dgu_A 79 FAKPPDQ 85 (103)
T ss_dssp ECCCCCC
T ss_pred EcCCCcc
Confidence 9987664
No 79
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.9e-20 Score=135.30 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=74.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
++.++|||+|||+++++++|+++|++||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+++.|+|++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 478999999999999999999999999999999999998 8999999999999999999999999999999999987754
No 80
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=5.7e-19 Score=130.58 Aligned_cols=74 Identities=23% Similarity=0.262 Sum_probs=70.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
.+..|||+||++.+||++|+++|.+||+|+++.+.. ++|||||+|.++++|++|++.||+++|.+++|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 578999999999999999999999999999999874 69999999999999999999999999999999999984
No 81
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=5e-19 Score=136.96 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=75.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
....++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+.++ +.|+|+.|+|++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEE
Confidence 3467999999999999999999999999999999999998 89999999999999999999998864 999999999999
Q ss_pred ecCCCC
Q 022894 174 VGTNAE 179 (290)
Q Consensus 174 a~~~~~ 179 (290)
+.+...
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987653
No 82
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.2e-19 Score=136.11 Aligned_cols=83 Identities=20% Similarity=0.257 Sum_probs=76.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeE-EEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~-v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
....++|||+|||+++|+++|+++|+.||.|.. |.|+.+.+++++|||||+|.+.++|++||+. |+..|+++.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 356799999999999999999999999999997 8888888999999999999999999999987 99999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+.+..
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87544
No 83
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7e-19 Score=133.77 Aligned_cols=81 Identities=25% Similarity=0.408 Sum_probs=74.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
..+.++|||+|||+++++++|+++|++||.| .|+.+.++++++||||+|.+.++|++||+.||++.|+++.|+|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 4568999999999999999999999999977 5666678899999999999999999999999999999999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.++.
T Consensus 89 ~~~~ 92 (101)
T 2fc9_A 89 GPRG 92 (101)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8764
No 84
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.3e-19 Score=136.76 Aligned_cols=84 Identities=19% Similarity=0.366 Sum_probs=77.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.....++|||+|||+++++++|+++|++||.|..|.|+.++. .+++||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345789999999999999999999999999999999998864 3899999999999999999999999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+.++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 98653
No 85
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.9e-19 Score=137.92 Aligned_cols=84 Identities=27% Similarity=0.459 Sum_probs=77.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHhccCCeeEEEEEeCC-CC---CCceEEEEEecCHHHHHHHHHHhCCceeCCe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIR---ELFSEIGELKRYAIHFDK-NG---RPSGSAEVVYARRSDAFAALKRYNNVLLDGK 167 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~---~~F~~~G~i~~v~i~~d~-tg---~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~ 167 (290)
....++|||.|||+++++++|+ ++|++||+|.+|.|+.++ ++ .++|||||+|.+.++|++||+.||++.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3467899999999999999999 999999999999999887 43 5669999999999999999999999999999
Q ss_pred eeEEEEecCCC
Q 022894 168 PMKIEVVGTNA 178 (290)
Q Consensus 168 ~i~V~~a~~~~ 178 (290)
.|+|+++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998765
No 86
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.9e-19 Score=137.26 Aligned_cols=82 Identities=20% Similarity=0.296 Sum_probs=77.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
..++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+. +++.|+|+.|+|+++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 46899999999999999999999999999999999998 899999999999999999999987 9999999999999998
Q ss_pred CCCC
Q 022894 176 TNAE 179 (290)
Q Consensus 176 ~~~~ 179 (290)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7653
No 87
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=4.3e-19 Score=139.32 Aligned_cols=83 Identities=17% Similarity=0.181 Sum_probs=77.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCC---eeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGE---LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~---i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
....++|||+|||+++|+++|+++|+.||. |..|.|+.++.++++|||||+|.+.++|++||+ ||++.|+++.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 346799999999999999999999999999 899999999999999999999999999999998 9999999999999
Q ss_pred EEecCCC
Q 022894 172 EVVGTNA 178 (290)
Q Consensus 172 ~~a~~~~ 178 (290)
.++....
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9986543
No 88
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=9.5e-19 Score=143.62 Aligned_cols=84 Identities=25% Similarity=0.376 Sum_probs=79.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
....++|||+|||+++++++|+++|+.||.|..|.|+.|+ ++.++|||||+|.+.++|++||+.||++.|+|+.|.|++
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+.+..
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 98764
No 89
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.4e-19 Score=138.91 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=77.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCe-eEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGEL-KRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i-~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
..+.++|||+|||+++|+++|+++|+.||.| ..|.|+.|++++++|||||+|.+.++|++||+. |++.|+++.|.|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3467899999999999999999999999999 899999999999999999999999999999976 99999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+.+..
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97654
No 90
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-19 Score=143.95 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=78.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeE--EEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCc----eeCCe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR--YAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNV----LLDGK 167 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~--v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~----~l~G~ 167 (290)
....++|||+|||+++|+++|+++|++||.|.. |.|+.|+ +++++|||||+|.+. +|++||+.||+. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999999976 9999999 999999999999999 999999999999 99999
Q ss_pred eeEEEEecCCC
Q 022894 168 PMKIEVVGTNA 178 (290)
Q Consensus 168 ~i~V~~a~~~~ 178 (290)
.|+|+++.+..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998754
No 91
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=1.8e-19 Score=144.95 Aligned_cols=84 Identities=25% Similarity=0.376 Sum_probs=79.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.+..++|||+|||+++|+++|+++|+.||.|+.|.|+.++ ++.++|||||+|.+.++|++||+.||+..|+++.|+|++
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+++..
T Consensus 124 a~~~~ 128 (135)
T 2lea_A 124 ARYGR 128 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98765
No 92
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.3e-19 Score=138.71 Aligned_cols=81 Identities=19% Similarity=0.324 Sum_probs=76.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
..++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|| .||++.|+|+.|+|+++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 46899999999999999999999999999999999998 7999999999999999999999 999999999999999987
Q ss_pred CCC
Q 022894 176 TNA 178 (290)
Q Consensus 176 ~~~ 178 (290)
+..
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 643
No 93
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.9e-19 Score=135.87 Aligned_cols=82 Identities=18% Similarity=0.340 Sum_probs=77.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCcee--------CCe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL--------DGK 167 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l--------~G~ 167 (290)
...++|||+|||+++++++|+++|+.||.|..|.|+.++++.+++||||+|.+.++|++||+.||+..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999 577
Q ss_pred eeEEEEecCC
Q 022894 168 PMKIEVVGTN 177 (290)
Q Consensus 168 ~i~V~~a~~~ 177 (290)
+|.|.|+.+.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999998754
No 94
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=129.53 Aligned_cols=78 Identities=29% Similarity=0.411 Sum_probs=72.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.....++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||++.|+++.|+|++
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45678999999999999999999999999999999987 45999999999999999999999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+.++.
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98765
No 95
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4.1e-19 Score=136.00 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=71.5
Q ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCC--ceeCCeeeEEE
Q 022894 96 EVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKIE 172 (290)
Q Consensus 96 ~~~~~l~V~nL~~-~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng--~~l~G~~i~V~ 172 (290)
+++++|||+|||+ .+|+++|+++|++||.|.+|.|+.+ ++||||+|++.++|++||+.||+ ..|+|++|.|+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 4689999999999 9999999999999999999999865 58999999999999999999885 46999999999
Q ss_pred EecCCC
Q 022894 173 VVGTNA 178 (290)
Q Consensus 173 ~a~~~~ 178 (290)
+++...
T Consensus 88 ~a~~~~ 93 (102)
T 1x4d_A 88 LSQKYK 93 (102)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 998654
No 96
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=132.46 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=72.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHh--CCceeCCeeeEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY--NNVLLDGKPMKIE 172 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~l--ng~~l~G~~i~V~ 172 (290)
.+++++|||+|||+.+++++|+++|++||.|++|.|+.+ ++||||+|.+.++|++||+.| ++..|+|++|.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 357899999999999999999999999999999988854 799999999999999999987 4688999999999
Q ss_pred EecCCC
Q 022894 173 VVGTNA 178 (290)
Q Consensus 173 ~a~~~~ 178 (290)
+++++.
T Consensus 87 ~a~~~~ 92 (101)
T 2cq1_A 87 YSNHKE 92 (101)
T ss_dssp ECSCSS
T ss_pred EcCccc
Confidence 998665
No 97
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=131.62 Aligned_cols=79 Identities=16% Similarity=0.267 Sum_probs=73.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC--CeeeEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD--GKPMKIE 172 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~--G~~i~V~ 172 (290)
.++.++|||.|||+++++++|+++|++||.|++|.|..+ ++||||+|.+.++|++||+.||++.|+ ++.|+|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 346799999999999999999999999999999988754 789999999999999999999999999 9999999
Q ss_pred EecCCC
Q 022894 173 VVGTNA 178 (290)
Q Consensus 173 ~a~~~~ 178 (290)
++.++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998765
No 98
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=2.9e-19 Score=128.42 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=71.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
+|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++|++ ||+..|+|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998 89999999999999999999996 9999999999999875
No 99
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=132.23 Aligned_cols=81 Identities=22% Similarity=0.319 Sum_probs=74.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
..+.++|||.|||+++++++|+++|+.| ..|.++.++ ++.+++||||+|.+.++|++||+.||++.|+++.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4578999999999999999999999977 467788887 899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
++++.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98765
No 100
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-19 Score=129.36 Aligned_cols=75 Identities=24% Similarity=0.368 Sum_probs=72.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
++|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++|++.++ ..|+|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999998 89999999999999999999999999 9999999999986
No 101
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=9.6e-19 Score=137.95 Aligned_cols=81 Identities=31% Similarity=0.492 Sum_probs=76.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
..++|||+|||+++++++|+++|+.||.|.+|.|+.++ ++.+++||||+|.+.++|++|| .||++.|+|+.|+|+++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 46899999999999999999999999999999999997 8999999999999999999999 899999999999999987
Q ss_pred CCC
Q 022894 176 TNA 178 (290)
Q Consensus 176 ~~~ 178 (290)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 102
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=133.00 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=71.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCC--ceeCCeeeEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKIE 172 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng--~~l~G~~i~V~ 172 (290)
.+++++|||+|||+.+++++|+++|++||.|.+|.|+.+ ++||||+|.+.++|++||+.|++ ..|+|++|.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 457899999999999999999999999999999998853 79999999999999999998865 45999999999
Q ss_pred EecCCC
Q 022894 173 VVGTNA 178 (290)
Q Consensus 173 ~a~~~~ 178 (290)
++..+.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 998655
No 103
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=138.06 Aligned_cols=84 Identities=21% Similarity=0.384 Sum_probs=75.7
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHH----HHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCee
Q 022894 93 SGIEVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP 168 (290)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~----~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~ 168 (290)
+..++.++|||+|||+.+++++|+ ++|++||.|.+|.+. .+++++|||||+|.+.++|++||+.||+..|.|++
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 345678999999999999999876 699999999987764 46788999999999999999999999999999999
Q ss_pred eEEEEecCCC
Q 022894 169 MKIEVVGTNA 178 (290)
Q Consensus 169 i~V~~a~~~~ 178 (290)
|+|+++..+.
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999998765
No 104
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-19 Score=136.64 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=74.7
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC--CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK--NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~--tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
.....++|||+|||+++++++|+++|+.|| |.+|.|+.++ +++++|||||+|.+.++|++|| .||+..|+|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345789999999999999999999999999 9999999987 7899999999999999999999 99999999999999
Q ss_pred EEecCCC
Q 022894 172 EVVGTNA 178 (290)
Q Consensus 172 ~~a~~~~ 178 (290)
+++.+..
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998654
No 105
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.8e-19 Score=137.45 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=73.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCC--ceeCCeeeEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN--VLLDGKPMKIE 172 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng--~~l~G~~i~V~ 172 (290)
.+++++|||+|||+++++++|+++|++||.|++|.|+.+ ++||||+|++.++|++||+.|++ ..|+|++|+|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 457899999999999999999999999999999999865 79999999999999999999874 68999999999
Q ss_pred EecCCCC
Q 022894 173 VVGTNAE 179 (290)
Q Consensus 173 ~a~~~~~ 179 (290)
+++++..
T Consensus 103 ~a~~k~~ 109 (119)
T 2ad9_A 103 FSNHKEL 109 (119)
T ss_dssp ECSSSSC
T ss_pred EccCCCC
Confidence 9987653
No 106
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=139.79 Aligned_cols=80 Identities=24% Similarity=0.355 Sum_probs=75.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
..+.++|||+|||+.+++++|+++|+.||+|..|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+|+.|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3468999999999999999999999999999999999997 899999999999999999999999999999999999997
Q ss_pred e
Q 022894 174 V 174 (290)
Q Consensus 174 a 174 (290)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 107
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=1.6e-19 Score=134.35 Aligned_cols=80 Identities=23% Similarity=0.441 Sum_probs=73.1
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecCC
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 177 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~~ 177 (290)
++|||+|||+++++++|+++|+.||+|.+|.|+.++ ++.+++||||+|.+.+ |++|++.||+..|+|+.|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999999999998 8999999999999999 99999999999999999999999876
Q ss_pred CC
Q 022894 178 AE 179 (290)
Q Consensus 178 ~~ 179 (290)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 108
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=5.1e-19 Score=142.47 Aligned_cols=82 Identities=17% Similarity=0.177 Sum_probs=76.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCC---eeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGE---LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~---i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
....++|||+|||+++|+++|+++|+.||. |..|.|++|+.++++|||||+|.+.++|++||+ ||+..|+++.|+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 346799999999999999999999999999 889999999999999999999999999999998 9999999999999
Q ss_pred EEecCC
Q 022894 172 EVVGTN 177 (290)
Q Consensus 172 ~~a~~~ 177 (290)
.++.+.
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 988643
No 109
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=5.5e-19 Score=137.00 Aligned_cols=79 Identities=19% Similarity=0.325 Sum_probs=74.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
..++|||+|||+++|++||+++|+.| .|..|.|+.|++++++|||||+|.+.++|++|| .+|++.|+++.|.|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 45799999999999999999999999 899999999999999999999999999999999 7999999999999988764
Q ss_pred C
Q 022894 177 N 177 (290)
Q Consensus 177 ~ 177 (290)
.
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 110
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.1e-19 Score=138.83 Aligned_cols=85 Identities=33% Similarity=0.426 Sum_probs=74.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.++.++|||+|||+++|+++|+++|+.||.|..|.+..+. ++.+++||||+|.+.++|++||+.||++.|+++.|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999999543332222 788999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 022894 174 VGTNAE 179 (290)
Q Consensus 174 a~~~~~ 179 (290)
+.+...
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 987653
No 111
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=8.2e-19 Score=136.41 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=72.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccC-CeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G-~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
....++|||+|||+++++++|+++|++|| +|..|.|..+ .++|||||+|.+.++|++||+.||+.+|+|+.|+|++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34678999999999999999999999999 8999888643 4789999999999999999999999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+...+
T Consensus 102 a~~~p 106 (111)
T 2jvr_A 102 DDNPP 106 (111)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 87543
No 112
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=128.30 Aligned_cols=77 Identities=23% Similarity=0.342 Sum_probs=72.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
..+.++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||++.|+++.|+|+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4578999999999999999999999999999999998 449999999999999999999999999999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.+..
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 113
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=129.78 Aligned_cols=80 Identities=34% Similarity=0.437 Sum_probs=71.7
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCC-eeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCC-ceeCCeeeEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGE-LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN-VLLDGKPMKI 171 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~-i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng-~~l~G~~i~V 171 (290)
.....++|||+|||+++++++|+++|++||. |..+.+. +++||||+|.+.++|++||+.||+ +.|+++.|+|
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 4567899999999999999999999999999 6655553 478999999999999999999999 9999999999
Q ss_pred EEecCCCC
Q 022894 172 EVVGTNAE 179 (290)
Q Consensus 172 ~~a~~~~~ 179 (290)
+++.++..
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99987653
No 114
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=130.57 Aligned_cols=79 Identities=28% Similarity=0.444 Sum_probs=73.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
..+.++|||+|||+.+++++|+++|++||+|..|.|..+ ++||||+|.+.++|++||+.||++.|+++.|+|+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 456789999999999999999999999999999999843 789999999999999999999999999999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.+..
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8765
No 115
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=126.50 Aligned_cols=78 Identities=23% Similarity=0.369 Sum_probs=72.0
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHh-CCceeCCeeeEE
Q 022894 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY-NNVLLDGKPMKI 171 (290)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~l-ng~~l~G~~i~V 171 (290)
+...+.++|||+|||+++++++|+++|++||.|..|.|+. +++||||+|.+.++|++|++.| |+..|+|++|+|
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3445789999999999999999999999999999999985 4799999999999999999999 999999999999
Q ss_pred EEec
Q 022894 172 EVVG 175 (290)
Q Consensus 172 ~~a~ 175 (290)
++++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 116
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=6.8e-19 Score=135.19 Aligned_cols=82 Identities=18% Similarity=0.298 Sum_probs=75.3
Q ss_pred CCCCCEEEEeCCCCCC------CHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCe-
Q 022894 95 IEVGTKLYVSNLHPGV------TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK- 167 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~------te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~- 167 (290)
....++|||+|||+.+ |+++|+++|++||.|..|.|+ ..++.++|||||+|.+.++|++||+.||+..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 3457899999999999 789999999999999999888 45889999999999999999999999999999998
Q ss_pred eeEEEEecCC
Q 022894 168 PMKIEVVGTN 177 (290)
Q Consensus 168 ~i~V~~a~~~ 177 (290)
+|+|+++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998654
No 117
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.77 E-value=5.6e-19 Score=140.33 Aligned_cols=99 Identities=17% Similarity=0.208 Sum_probs=74.6
Q ss_pred CCCCchhhHHHhhh-----cCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCee--EEEEEeCCCCCCceEEEEEecC
Q 022894 76 FPWQHDLFEDSLRA-----AGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELK--RYAIHFDKNGRPSGSAEVVYAR 148 (290)
Q Consensus 76 ~~~~~d~~~~~~~~-----~~~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~--~v~i~~d~tg~~kG~afV~F~~ 148 (290)
..|+++++...... .........++|||+|||+++|+++|+++|+.| .|+ .|.|++|+.++++|||||+|.+
T Consensus 15 ~~~~~~~~s~~g~~~~~~g~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~ 93 (126)
T 2hgm_A 15 VPRGSHMASMTGGQQMGRGSNSADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFAS 93 (126)
T ss_dssp --------------------CTTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESS
T ss_pred cccccccccccCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECC
Confidence 45777766543321 112234567899999999999999999999999 677 8999999999999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022894 149 RSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 149 ~~~A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
.++|++||+. ++..|+++.|.|.++.+
T Consensus 94 ~e~A~~Al~~-~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 94 QELAEKALGK-HKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp TTHHHHHHTT-TTCCBTTBCCCCEEECH
T ss_pred HHHHHHHHHH-CCCEECCEEEEEEECCH
Confidence 9999999975 77999999999998854
No 118
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3e-18 Score=132.21 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=74.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
...++|||+|||+.+++++|+++|+.||.|..|.|+.+ ++||||+|.+.++|++||+.||++.|+|+.|+|+++.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 46899999999999999999999999999999999865 7899999999999999999999999999999999998
Q ss_pred CCCC
Q 022894 176 TNAE 179 (290)
Q Consensus 176 ~~~~ 179 (290)
+...
T Consensus 98 ~~~~ 101 (109)
T 1x4g_A 98 ESPD 101 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7653
No 119
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.2e-19 Score=141.08 Aligned_cols=82 Identities=17% Similarity=0.285 Sum_probs=74.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEe-CCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHF-DKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~-d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
...++|||+|||+++|+++|+++|+.||.|..+.++. +.+++++|||||+|.+.++|++||+ ||++.|+++.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4679999999999999999999999999998854444 4599999999999999999999998 9999999999999998
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.++.
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7644
No 120
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.76 E-value=8.1e-19 Score=132.26 Aligned_cols=84 Identities=23% Similarity=0.449 Sum_probs=75.6
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHH----HHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeee
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~----~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i 169 (290)
..++.++|||+|||+++++++|+ ++|++||.|..|.|. +++.+++||||+|.+.++|++|++.||+..|+|+.|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS--RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC--HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE--cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 35678999999999999999999 999999999998876 356678999999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 022894 170 KIEVVGTNAE 179 (290)
Q Consensus 170 ~V~~a~~~~~ 179 (290)
+|+++.++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987653
No 121
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=130.13 Aligned_cols=80 Identities=16% Similarity=0.331 Sum_probs=72.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
.+..++|||+|||+++++++|+++|++||.|. +.++.+ .+++||||+|.+.++|++||+.||+..|+|+.|+|+++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34678999999999999999999999999997 666654 67899999999999999999999999999999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 122
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.7e-18 Score=127.94 Aligned_cols=77 Identities=29% Similarity=0.429 Sum_probs=71.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc--CCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEI--GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~--G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
..+.++|||+|||+++++++|+++|++| |.|..|.+. ++||||+|.+.++|++||+.||++.|+++.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4578999999999999999999999999 999988875 6799999999999999999999999999999999
Q ss_pred EecCCC
Q 022894 173 VVGTNA 178 (290)
Q Consensus 173 ~a~~~~ 178 (290)
++.+..
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 998765
No 123
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.1e-18 Score=131.12 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=72.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
....++|||+|||+++++++|+++|+.||.|.+|.|. ++++||||+|.+.++|++||+.||++.|+|+.|+|+++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3467999999999999999999999999999999998 46899999999999999999999999999999999998
Q ss_pred cC
Q 022894 175 GT 176 (290)
Q Consensus 175 ~~ 176 (290)
++
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 124
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=131.25 Aligned_cols=76 Identities=26% Similarity=0.396 Sum_probs=72.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecCCC
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~~~ 178 (290)
++|||+|||+++|+++|+++|++||+|..|.|+.+ +++||||+|.+.++|++|++.||+..|+|+.|+|+++.+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999999877 68999999999999999999999999999999999998765
No 125
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=6.9e-18 Score=127.78 Aligned_cols=77 Identities=21% Similarity=0.373 Sum_probs=71.7
Q ss_pred CCCCCCEEEEeCCCC-CCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 94 GIEVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~-~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
..++.++|||+|||+ ++++++|+++|+.||.|..|.|. ++||||+|.+.++|++||+.||+..|+|+.|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 456789999999998 99999999999999999999884 7899999999999999999999999999999999
Q ss_pred EecCC
Q 022894 173 VVGTN 177 (290)
Q Consensus 173 ~a~~~ 177 (290)
+++++
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98765
No 126
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-19 Score=135.99 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=74.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
....++|||+|||+++++++|+++|+.||.|.. .++.+. ++.++|||||+|.+.++|++||+ ||+..|+++.|+|++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 346789999999999999999999999999987 555665 78999999999999999999998 999999999999999
Q ss_pred ecCCCC
Q 022894 174 VGTNAE 179 (290)
Q Consensus 174 a~~~~~ 179 (290)
+.++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 987653
No 127
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=135.28 Aligned_cols=80 Identities=21% Similarity=0.351 Sum_probs=72.0
Q ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhC--CceeCCeeeEE
Q 022894 95 IEVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN--NVLLDGKPMKI 171 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~-~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln--g~~l~G~~i~V 171 (290)
.+++++|||+|||++ +++++|+++|++||.|.+|.|+ ++++||||+|.+.++|++||+.|| ...|+|++|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346899999999998 9999999999999999999997 358999999999999999999886 46699999999
Q ss_pred EEecCCCC
Q 022894 172 EVVGTNAE 179 (290)
Q Consensus 172 ~~a~~~~~ 179 (290)
++++....
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99986653
No 128
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.4e-18 Score=129.02 Aligned_cols=77 Identities=22% Similarity=0.353 Sum_probs=71.6
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~-~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.++.++|||+|||+ ++++++|+++|++||.|..|.|. ++||||+|.+.++|++||+.||+..|+|+.|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45789999999999 99999999999999999999985 78999999999999999999999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+.+..
T Consensus 80 a~~~~ 84 (96)
T 2kvi_A 80 SSSNA 84 (96)
T ss_dssp EECCC
T ss_pred cCcCC
Confidence 98765
No 129
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.75 E-value=5e-18 Score=131.19 Aligned_cols=77 Identities=21% Similarity=0.322 Sum_probs=72.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
....++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++|++.||+..|+|+.|.|+++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 4578999999999999999999999999999999998 789999999999999999999999999999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.+..
T Consensus 101 ~~~~ 104 (108)
T 2jvo_A 101 KLPA 104 (108)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8765
No 130
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=5.3e-18 Score=131.94 Aligned_cols=82 Identities=22% Similarity=0.344 Sum_probs=75.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
.+++++|||+|||+.+++++|+++|+.||.|..|.|+.+. .+++||||+|.+.++|++|++.||+..|+|+.|.|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP--ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST--TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC--CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 4568999999999999999999999999999999998764 45899999999999999999999999999999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.+..
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 7543
No 131
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=126.86 Aligned_cols=73 Identities=21% Similarity=0.348 Sum_probs=68.0
Q ss_pred CCEEEEeCCCCCC------CHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCe-eeE
Q 022894 98 GTKLYVSNLHPGV------TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK-PMK 170 (290)
Q Consensus 98 ~~~l~V~nL~~~~------te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~-~i~ 170 (290)
+++|||+|||+.+ ++++|+++|++||+|.+|.|+ ..+++++|||||+|.+.++|++||+.||+..|+|+ +|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 4799999999999 779999999999999999887 45889999999999999999999999999999999 887
Q ss_pred E
Q 022894 171 I 171 (290)
Q Consensus 171 V 171 (290)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 132
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=2.9e-18 Score=133.90 Aligned_cols=76 Identities=21% Similarity=0.383 Sum_probs=65.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCee-----e
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP-----M 169 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~-----i 169 (290)
....++|||.|||+++++++|+++|++||+|+.|.|+.+ +||||+|.+.++|++||+.||+++|+|+. |
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 346799999999999999999999999999999999855 89999999999999999999999999998 5
Q ss_pred EEEEecC
Q 022894 170 KIEVVGT 176 (290)
Q Consensus 170 ~V~~a~~ 176 (290)
+|+.+.+
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 5555443
No 133
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.75 E-value=4.2e-18 Score=137.73 Aligned_cols=86 Identities=28% Similarity=0.378 Sum_probs=75.9
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEE------EEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC
Q 022894 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY------AIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (290)
Q Consensus 93 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v------~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 166 (290)
....+.++|||+|||+++|+++|+++|+.||.|..| .|....++.++|||||+|.+.++|++||+.||+..|+|
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 345678999999999999999999999999999864 23223478899999999999999999999999999999
Q ss_pred eeeEEEEecCCC
Q 022894 167 KPMKIEVVGTNA 178 (290)
Q Consensus 167 ~~i~V~~a~~~~ 178 (290)
+.|+|+++.+..
T Consensus 120 ~~l~V~~a~~~~ 131 (143)
T 3egn_A 120 KPMVVQFARSAR 131 (143)
T ss_dssp EECEEEECCCSC
T ss_pred cEEEEEECCCCC
Confidence 999999997654
No 134
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=9.7e-19 Score=134.78 Aligned_cols=83 Identities=13% Similarity=0.207 Sum_probs=77.2
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCC---eeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGE---LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~---i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~ 170 (290)
.....++|||+|||+++|+++|+++|+.||. |..|.|+.++.++++|||||+|.+.++|++||+ +|+..|+++.|+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3457899999999999999999999999988 899999999889999999999999999999998 999999999999
Q ss_pred EEEecCC
Q 022894 171 IEVVGTN 177 (290)
Q Consensus 171 V~~a~~~ 177 (290)
|.++.+.
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998754
No 135
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.75 E-value=9.2e-18 Score=144.52 Aligned_cols=84 Identities=31% Similarity=0.381 Sum_probs=77.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
..+.++|||+|||+++|+++|+++|++||+|++|.|+.|+ +++++|||||+|.+.++|++||+.||+..+.++.|+|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999998
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 86554
No 136
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-18 Score=136.80 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=75.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCe----eEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGEL----KRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i----~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
...++|||+|||+++|++||+++|+.||.| ..|.|+.+++++++|||||+|.+.++|++||+. |++.|.++.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 367999999999999999999999999986 689999999999999999999999999999976 999999999999
Q ss_pred EEecCCC
Q 022894 172 EVVGTNA 178 (290)
Q Consensus 172 ~~a~~~~ 178 (290)
..+.+..
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9886543
No 137
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6e-18 Score=131.31 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=72.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
..++|||+|||+.+++++|+++|++||.|..|.|+. +++||||+|.+.++|++||+.||+..|+++.|.|+|+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 468999999999999999999999999999998873 578999999999999999999999999999999999987
Q ss_pred CC
Q 022894 177 NA 178 (290)
Q Consensus 177 ~~ 178 (290)
..
T Consensus 84 ~~ 85 (111)
T 1whx_A 84 GV 85 (111)
T ss_dssp TT
T ss_pred Cc
Confidence 55
No 138
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.74 E-value=6.8e-19 Score=142.24 Aligned_cols=81 Identities=23% Similarity=0.361 Sum_probs=75.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
...++|||+|||+++|+++|+++|++|| |++|.|++|++++++|||||+|.+.++|++|| .+|+..|+++.|+|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4678999999999999999999999999 77999999999999999999999999999999 889999999999999887
Q ss_pred CCC
Q 022894 176 TNA 178 (290)
Q Consensus 176 ~~~ 178 (290)
+..
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 139
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=1.1e-18 Score=125.19 Aligned_cols=74 Identities=19% Similarity=0.366 Sum_probs=70.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
+|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++|++ +++..|+|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999998 89999999999999999999997 4899999999999875
No 140
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-18 Score=128.84 Aligned_cols=80 Identities=21% Similarity=0.432 Sum_probs=72.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
..+.++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|++||+.||+..|+|+.|+|+++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 4567999999999999999999999999988765 347788999999999999999999999999999999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.++.
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7664
No 141
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=9.2e-18 Score=129.70 Aligned_cols=76 Identities=25% Similarity=0.480 Sum_probs=70.9
Q ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~-~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
...++|||+|||++ +++++|+++|++||+|..|.| +++||||+|.+.++|++||+.||++.|+++.|+|+++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45689999999999 999999999999999999988 3889999999999999999999999999999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.+..
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 142
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=125.72 Aligned_cols=78 Identities=21% Similarity=0.242 Sum_probs=69.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
....++|||+|||+++++++|+++|++||.|.+| +.++ ++. ||||+|.+.++|++||+ ||++.|+|+.|.|++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3457899999999999999999999999999987 5555 554 99999999999999999 999999999999998
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+.+..
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 76554
No 143
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=3.3e-18 Score=130.23 Aligned_cols=82 Identities=18% Similarity=0.325 Sum_probs=76.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
....++|||+|||+++++++|+++|+.||.|..|.|+.++++.++|||||+|.+.++|++||+ +++.|+|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345789999999999999999999999999999999999999999999999999999999997 999999999999998
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.+..
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7655
No 144
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=9e-18 Score=126.32 Aligned_cols=81 Identities=19% Similarity=0.319 Sum_probs=72.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEE-EEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY-AIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v-~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
....++|||+|||+++++++|+++|+.||.|..| .|+.++. .+.|||+|.+.++|++||+.||+..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999 4777752 23499999999999999999999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+.++.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98763
No 145
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.8e-17 Score=123.35 Aligned_cols=77 Identities=22% Similarity=0.347 Sum_probs=71.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
..+.++|||+|| ++++++|+++|++||+|..|.|. .+++||||+|.+.++|++||+.||+..|+++.|+|+++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 346799999996 89999999999999999999985 56899999999999999999999999999999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.++.
T Consensus 85 ~~~~ 88 (97)
T 1x5p_A 85 RKQP 88 (97)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8765
No 146
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2.3e-19 Score=140.06 Aligned_cols=83 Identities=24% Similarity=0.451 Sum_probs=78.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeE--------EEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCC
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKR--------YAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~--------v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 166 (290)
.+.++|||+|||+++++++|+++|+.||.|.. |.|+.++ ++.+++||||+|.+.++|++||+.||+..|++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 46789999999999999999999999999998 8899997 89999999999999999999999999999999
Q ss_pred eeeEEEEecCCC
Q 022894 167 KPMKIEVVGTNA 178 (290)
Q Consensus 167 ~~i~V~~a~~~~ 178 (290)
+.|+|+++.++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999998664
No 147
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=1.2e-17 Score=123.90 Aligned_cols=77 Identities=19% Similarity=0.310 Sum_probs=71.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
...++|||+|||+++++++|+++|++| .|.+|.|. +++|||||+|.+.++|++|++.||+..|+|++|+|+++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 357899999999999999999999999 99999885 678999999999999999999999999999999999987
Q ss_pred CCC
Q 022894 176 TNA 178 (290)
Q Consensus 176 ~~~ 178 (290)
.+.
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 148
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=1.3e-17 Score=135.90 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=74.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
..+.++|||+|||+++++++|+++|+.||.|.+|.|+.+ ++|||||+|.+.++|++||+.||++.|+|++|+|+++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 456799999999999999999999999999999999876 5899999999999999999999999999999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.++.
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 149
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.72 E-value=4e-17 Score=133.56 Aligned_cols=82 Identities=29% Similarity=0.427 Sum_probs=78.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
+.++|||+|||+++++++|+++|+.||+|.+|.++.++ ++.+++||||+|.+.++|++|++.||+..|.++.|+|+++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999998 99999999999999999999999999999999999999998
Q ss_pred CCC
Q 022894 176 TNA 178 (290)
Q Consensus 176 ~~~ 178 (290)
+..
T Consensus 81 ~~~ 83 (167)
T 1fxl_A 81 PSS 83 (167)
T ss_dssp CCC
T ss_pred CCc
Confidence 655
No 150
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=123.35 Aligned_cols=78 Identities=24% Similarity=0.262 Sum_probs=68.6
Q ss_pred CCCCCE-EEEeCCCCCCCHHH----HHHHHhcc-CCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCee
Q 022894 95 IEVGTK-LYVSNLHPGVTNDD----IRELFSEI-GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP 168 (290)
Q Consensus 95 ~~~~~~-l~V~nL~~~~te~d----L~~~F~~~-G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~ 168 (290)
.+++.+ |||.|||+.+++++ |+++|++| |+|.+| ++ |||||+|.+.++|++|++.||+.+|.|++
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 445666 99999999999988 55899999 599987 22 99999999999999999999999999999
Q ss_pred eEEEEecCCCCCC
Q 022894 169 MKIEVVGTNAEIP 181 (290)
Q Consensus 169 i~V~~a~~~~~~~ 181 (290)
|+|++|+.+.+.-
T Consensus 76 i~v~~A~~~sd~~ 88 (96)
T 2diu_A 76 IIVSFTPKNRELC 88 (96)
T ss_dssp CEEESSCCSCCCC
T ss_pred EEEEecCCCccee
Confidence 9999999887543
No 151
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=5e-17 Score=132.86 Aligned_cols=82 Identities=21% Similarity=0.392 Sum_probs=77.9
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
...+.++|||.|||+.+++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34567899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred Eec
Q 022894 173 VVG 175 (290)
Q Consensus 173 ~a~ 175 (290)
|++
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 152
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=4.2e-17 Score=139.41 Aligned_cols=84 Identities=21% Similarity=0.405 Sum_probs=79.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
...++|||.|||+.+++++|+++|+.||.|+.|.|+.++ ++.+++||||+|.+.++|++|++.||+..|+|+.|+|+++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 357899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 022894 175 GTNAE 179 (290)
Q Consensus 175 ~~~~~ 179 (290)
.+.+.
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87653
No 153
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=4e-17 Score=134.76 Aligned_cols=81 Identities=19% Similarity=0.161 Sum_probs=72.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC--eeeEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG--KPMKIE 172 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G--~~i~V~ 172 (290)
.....+|||.||++.+|+++|+++|++||+|++|.|..+ .+++||||+|.+.++|++|++.||+..|.+ +.|+|+
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 344567999999999999999999999999999998754 357899999999999999999999999966 999999
Q ss_pred EecCCC
Q 022894 173 VVGTNA 178 (290)
Q Consensus 173 ~a~~~~ 178 (290)
|++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998764
No 154
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.1e-17 Score=130.28 Aligned_cols=78 Identities=18% Similarity=0.314 Sum_probs=71.2
Q ss_pred CEEEEeCC----CCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecC----HHH----HHHHHH--HhCCce
Q 022894 99 TKLYVSNL----HPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYAR----RSD----AFAALK--RYNNVL 163 (290)
Q Consensus 99 ~~l~V~nL----~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~----~~~----A~~Ai~--~lng~~ 163 (290)
++|||+|| |+.|++++|+++|++||+|.+|.++.|+ |+.++|||||+|.+ +++ |.+||+ .||+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 79999999 9999999999999999999999999999 99999999999996 333 888988 789999
Q ss_pred eCCeeeEEEEecC
Q 022894 164 LDGKPMKIEVVGT 176 (290)
Q Consensus 164 l~G~~i~V~~a~~ 176 (290)
|+|++|+|.+-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998653
No 155
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=4.1e-17 Score=133.96 Aligned_cols=83 Identities=27% Similarity=0.362 Sum_probs=78.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
+.++|||+|||+++++++|+++|+.||+|.+|.|+.++ ++.++|||||+|.+.++|++|++.||+..|.++.|.|+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999999999999999999999999999999987 89999999999999999999999999999999999999998
Q ss_pred CCCC
Q 022894 176 TNAE 179 (290)
Q Consensus 176 ~~~~ 179 (290)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 6653
No 156
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=127.56 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=71.2
Q ss_pred CCCCCCEEEE--eCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCcee-----CC
Q 022894 94 GIEVGTKLYV--SNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL-----DG 166 (290)
Q Consensus 94 ~~~~~~~l~V--~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l-----~G 166 (290)
..++.++||| +||++++++++|+++|++||+|.+|.|.. .++||||+|.+.++|++|++.||+.+| .+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 3456889999 66999999999999999999999988763 378999999999999999999999998 78
Q ss_pred eeeEEEEecCCC
Q 022894 167 KPMKIEVVGTNA 178 (290)
Q Consensus 167 ~~i~V~~a~~~~ 178 (290)
++|.|.++...+
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 999999997544
No 157
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=9.2e-17 Score=127.88 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=71.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceE-EEEEecCHHHHHHHHHHhCCceeCC--eeeEEE
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGS-AEVVYARRSDAFAALKRYNNVLLDG--KPMKIE 172 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~-afV~F~~~~~A~~Ai~~lng~~l~G--~~i~V~ 172 (290)
..-..|||.||++.+|+++|+++|++||+|.+|.|..+ .++| |||+|.+.++|++|++.||+..|.+ +.|+|+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34467889999999999999999999999999988753 3678 9999999999999999999999998 899999
Q ss_pred EecCCC
Q 022894 173 VVGTNA 178 (290)
Q Consensus 173 ~a~~~~ 178 (290)
++++..
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998654
No 158
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=1.1e-16 Score=134.83 Aligned_cols=84 Identities=23% Similarity=0.290 Sum_probs=76.9
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIE 172 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~ 172 (290)
.....++|||+|||+++|+++|+++|+.||.|.+|.|+.++ ++.++|||||+|.+.++|++||+. ++..|+|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 34578999999999999999999999999999999999998 899999999999999999999965 8999999999999
Q ss_pred EecCCC
Q 022894 173 VVGTNA 178 (290)
Q Consensus 173 ~a~~~~ 178 (290)
++.+..
T Consensus 88 ~~~~~~ 93 (196)
T 1l3k_A 88 RAVSRE 93 (196)
T ss_dssp ECCC--
T ss_pred cccCcc
Confidence 987654
No 159
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=9.2e-17 Score=125.03 Aligned_cols=81 Identities=23% Similarity=0.270 Sum_probs=70.4
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-C---CCCceEEEEEecCHHHHHHHHHHhCCceeCCeee
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N---GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-t---g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i 169 (290)
.....++|||+|||+++++++|+++|++||+|. +.++.+. + ++++|||||+|.+.++|++||+.|+ .|+|+.|
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 345689999999999999999999999999999 8887776 5 7999999999999999999999984 5888888
Q ss_pred EEEEecCC
Q 022894 170 KIEVVGTN 177 (290)
Q Consensus 170 ~V~~a~~~ 177 (290)
.|..+.+.
T Consensus 81 ~~~~~~~~ 88 (114)
T 2dnl_A 81 LCVSSPTI 88 (114)
T ss_dssp EEECCSSS
T ss_pred EeccCCCc
Confidence 87755433
No 160
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.3e-16 Score=130.37 Aligned_cols=81 Identities=28% Similarity=0.365 Sum_probs=76.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecCCC
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~~~ 178 (290)
++|||+|||+++|+++|+++|+.||+|.+|.|+.++++.+++||||+|.+.++|++|++.||+..|.++.|.|+++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999999999988899999999999999999999999999999999999987655
Q ss_pred C
Q 022894 179 E 179 (290)
Q Consensus 179 ~ 179 (290)
.
T Consensus 81 ~ 81 (166)
T 3md3_A 81 Q 81 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 161
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.69 E-value=1.5e-16 Score=134.19 Aligned_cols=84 Identities=23% Similarity=0.354 Sum_probs=79.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
....++|||.|||+.+++++|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|++|++.||+..|+|+.|+|++
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3567999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+.++.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98765
No 162
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.69 E-value=1.3e-16 Score=131.45 Aligned_cols=79 Identities=23% Similarity=0.351 Sum_probs=76.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
...++|||+|||+.+++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++|++.||+..|+|+.|.|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 457899999999999999999999999999999999997 9999999999999999999999999999999999999987
No 163
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=1e-16 Score=137.94 Aligned_cols=81 Identities=19% Similarity=0.337 Sum_probs=75.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
..++|||+|||+.+|+++|+++|+.||.|+.|.|+.|.. .++|||||+|.+.++|++||+.||++.|+|++|+|+++.+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 457999999999999999999999999999999998863 3699999999999999999999999999999999999976
Q ss_pred CC
Q 022894 177 NA 178 (290)
Q Consensus 177 ~~ 178 (290)
+.
T Consensus 181 ~~ 182 (213)
T 4f02_A 181 RK 182 (213)
T ss_dssp HH
T ss_pred Cc
Confidence 54
No 164
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=1.8e-16 Score=125.36 Aligned_cols=75 Identities=21% Similarity=0.178 Sum_probs=67.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceE-EEEEecCHHHHHHHHHHhCCceeCC--eeeEEEEec
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGS-AEVVYARRSDAFAALKRYNNVLLDG--KPMKIEVVG 175 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~-afV~F~~~~~A~~Ai~~lng~~l~G--~~i~V~~a~ 175 (290)
..|||.||++.+++++|+++|++||.|++|.|+. + .|| |||+|.+.++|++|++.||+..|.+ +.|+|++++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4578999999999999999999999999999865 2 376 9999999999999999999999988 589999998
Q ss_pred CCC
Q 022894 176 TNA 178 (290)
Q Consensus 176 ~~~ 178 (290)
+..
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 165
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.68 E-value=1.1e-16 Score=117.91 Aligned_cols=71 Identities=21% Similarity=0.454 Sum_probs=66.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc----C-------CeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCcee
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEI----G-------ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL 164 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~----G-------~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l 164 (290)
.+.++|||+|||+++++++|+++|++| | .|.+|.+..+ ++||||+|.+.++|++|+ .||+..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 467899999999999999999999999 8 8999988754 899999999999999999 9999999
Q ss_pred CCeeeEEE
Q 022894 165 DGKPMKIE 172 (290)
Q Consensus 165 ~G~~i~V~ 172 (290)
+|+.|+|+
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99999997
No 166
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.68 E-value=7.4e-17 Score=120.22 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=62.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCc--eeCCeeeEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV--LLDGKPMKIE 172 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~--~l~G~~i~V~ 172 (290)
..+.++|||+|||+++|+++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|++ +++. .++++.|.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 457899999999999999999999999999999999875 68999999999999884 4454 4569999999
Q ss_pred EecCCC
Q 022894 173 VVGTNA 178 (290)
Q Consensus 173 ~a~~~~ 178 (290)
++.++.
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 987654
No 167
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.68 E-value=1.8e-16 Score=136.09 Aligned_cols=78 Identities=22% Similarity=0.237 Sum_probs=72.9
Q ss_pred CCCEEEEeCCC-CCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLH-PGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~-~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
++++|||+||| +.+++++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++||+.||++.|.|++|.|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 57999999999 89999999999999999999999865 37999999999999999999999999999999999987
Q ss_pred CCC
Q 022894 176 TNA 178 (290)
Q Consensus 176 ~~~ 178 (290)
...
T Consensus 79 ~~~ 81 (205)
T 3tyt_A 79 QPA 81 (205)
T ss_dssp CSC
T ss_pred CCc
Confidence 554
No 168
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=2.3e-16 Score=132.83 Aligned_cols=83 Identities=16% Similarity=0.307 Sum_probs=75.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
...++|||.|||+++|+++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++||+. ++..|+|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 456899999999999999999999999999999999998 899999999999999999999976 899999999999999
Q ss_pred cCCCC
Q 022894 175 GTNAE 179 (290)
Q Consensus 175 ~~~~~ 179 (290)
.++..
T Consensus 181 ~~k~~ 185 (196)
T 1l3k_A 181 LSKQE 185 (196)
T ss_dssp C----
T ss_pred CChhH
Confidence 87764
No 169
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=8.3e-17 Score=132.09 Aligned_cols=80 Identities=19% Similarity=0.332 Sum_probs=76.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
..++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++|++ +++..|+|+.|+|+++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 46799999999999999999999999999999999997 89999999999999999999997 89999999999999998
Q ss_pred CC
Q 022894 176 TN 177 (290)
Q Consensus 176 ~~ 177 (290)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 170
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.67 E-value=2.1e-16 Score=124.59 Aligned_cols=77 Identities=22% Similarity=0.347 Sum_probs=71.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
..+.++|||+|| ++++++|+++|+.||+|.+|.|. .+++||||+|.+.++|++||+.||+..|+++.|+|+++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 456899999996 69999999999999999999986 56899999999999999999999999999999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.+..
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8765
No 171
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.1e-17 Score=119.93 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=66.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
.+.++|||+|||+++++++|+++|++||+|.+|.|+.+ +++||||+|.+.++|++|+.. .+.++++.|.|+++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 46799999999999999999999999999999998865 689999999999999865432 356699999999887
Q ss_pred CCC
Q 022894 176 TNA 178 (290)
Q Consensus 176 ~~~ 178 (290)
++.
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 665
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=3.5e-16 Score=129.05 Aligned_cols=80 Identities=25% Similarity=0.393 Sum_probs=74.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC---CeeeEEE
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD---GKPMKIE 172 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~---G~~i~V~ 172 (290)
...++|||+|||+.+|+++|+++|+.||.|..|.|+.++++.++|||||+|.+.++|++|++.||+..+. +++|+|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 3678999999999999999999999999999999999999999999999999999999999999998776 4999999
Q ss_pred Eec
Q 022894 173 VVG 175 (290)
Q Consensus 173 ~a~ 175 (290)
||.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 173
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.67 E-value=4.9e-16 Score=127.44 Aligned_cols=80 Identities=35% Similarity=0.601 Sum_probs=75.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCC--eeeEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDG--KPMKI 171 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G--~~i~V 171 (290)
....++|||.|||+.+++++|+++|+.||.|..|.|+.++ ++.+++||||+|.+.++|.+|++.||+..|+| ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3467899999999999999999999999999999999998 89999999999999999999999999999988 99999
Q ss_pred EEe
Q 022894 172 EVV 174 (290)
Q Consensus 172 ~~a 174 (290)
++|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 174
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=2.9e-16 Score=134.18 Aligned_cols=82 Identities=26% Similarity=0.414 Sum_probs=74.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
..++|||+|||+++|+++|+++|+.||+|.+|.|+.++ ++.+++||||+|.+.++|++||+.||+..|+++.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 57899999999999999999999999999999999998 89999999999999999999999999999999999998876
Q ss_pred CCC
Q 022894 176 TNA 178 (290)
Q Consensus 176 ~~~ 178 (290)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 175
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=9.9e-16 Score=117.77 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=72.8
Q ss_pred CCCCEEEEeCCCC-----CCCHHHHHHHHhccCCeeEEEEEeCC--CCCCceEEEEEecCHHHHHHHHHHhCCceeCCee
Q 022894 96 EVGTKLYVSNLHP-----GVTNDDIRELFSEIGELKRYAIHFDK--NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP 168 (290)
Q Consensus 96 ~~~~~l~V~nL~~-----~~te~dL~~~F~~~G~i~~v~i~~d~--tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~ 168 (290)
.++++|+|.||.. +.++++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|++|++.||+..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4688999999952 23789999999999999999999986 3688999999999999999999999999999999
Q ss_pred eEEEEecC
Q 022894 169 MKIEVVGT 176 (290)
Q Consensus 169 i~V~~a~~ 176 (290)
|.|+++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 176
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.65 E-value=8.7e-16 Score=125.51 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=73.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCee--eEEE
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKP--MKIE 172 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~--i~V~ 172 (290)
...++|||.|||+.+++++|+++|+.||.|..+.++.+. ++.+++||||+|.+.++|++|++.||+..|+|+. |.|+
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 456899999999999999999999999999999999998 8999999999999999999999999999999975 7777
Q ss_pred Ee
Q 022894 173 VV 174 (290)
Q Consensus 173 ~a 174 (290)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 65
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=8.9e-16 Score=126.57 Aligned_cols=83 Identities=19% Similarity=0.368 Sum_probs=75.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CC--CCceEEEEEecCHHHHHHHHHHhCCceeC---CeeeE
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NG--RPSGSAEVVYARRSDAFAALKRYNNVLLD---GKPMK 170 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg--~~kG~afV~F~~~~~A~~Ai~~lng~~l~---G~~i~ 170 (290)
..++|||+|||+++|+++|+++|++||+|.+|.|+.++ ++ ++++||||+|.+.++|++|++.||+..+. .+.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998 54 89999999999999999999999998876 67888
Q ss_pred EEEecCCCC
Q 022894 171 IEVVGTNAE 179 (290)
Q Consensus 171 V~~a~~~~~ 179 (290)
|.++.+...
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888776554
No 178
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=8.2e-16 Score=130.82 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=73.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecC
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
..++|||+|||+++|+++|+++|++||.|..|.|+.+.++.++|||||+|.+.++|++||+.+ +..|+|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 358999999999999999999999999999999999999999999999999999999999765 4699999999998764
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=1.1e-15 Score=136.30 Aligned_cols=83 Identities=23% Similarity=0.426 Sum_probs=76.4
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHH----HHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeee
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~----~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i 169 (290)
...+.++|||+|||+++++++|+ ++|+.||.|.+|.|+. +++++|||||+|.+.++|++||+.||+..|.++.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 45678999999999999999976 8999999999998875 67889999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 022894 170 KIEVVGTNA 178 (290)
Q Consensus 170 ~V~~a~~~~ 178 (290)
+|+++....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997655
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.63 E-value=7.2e-16 Score=127.69 Aligned_cols=78 Identities=22% Similarity=0.428 Sum_probs=72.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
...++|||.|||+.+++++|+++|+.||.|..+ ..++.+++||||+|.+.++|.+|++.||+..|+|+.|+|+++.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 456899999999999999999999999988755 5588999999999999999999999999999999999999998
Q ss_pred CC
Q 022894 176 TN 177 (290)
Q Consensus 176 ~~ 177 (290)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 181
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=6.1e-16 Score=135.50 Aligned_cols=81 Identities=19% Similarity=0.277 Sum_probs=71.8
Q ss_pred CCCCCCEEEEeCCCCCC---------CHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCcee
Q 022894 94 GIEVGTKLYVSNLHPGV---------TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL 164 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~---------te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l 164 (290)
.....++|||+||++.+ ++++|+++|++||+|++|.|+. ++|||||+|.+.++|+.|++.|++..|
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 35678999999999998 7999999999999999999984 589999999999999999999999999
Q ss_pred ------------CCeeeEEEEecCCCC
Q 022894 165 ------------DGKPMKIEVVGTNAE 179 (290)
Q Consensus 165 ------------~G~~i~V~~a~~~~~ 179 (290)
+++.|.|.||.+.+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987764
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=7.6e-16 Score=126.29 Aligned_cols=79 Identities=24% Similarity=0.385 Sum_probs=73.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
++++|||+|||+++|+++|+++|+.||.|.+|.|+.++ ++.++|||||+|.+.++|++||+. .+.|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 46899999999999999999999999999999999997 899999999999999999999984 578999999999876
Q ss_pred CC
Q 022894 176 TN 177 (290)
Q Consensus 176 ~~ 177 (290)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=1.1e-15 Score=132.96 Aligned_cols=80 Identities=33% Similarity=0.417 Sum_probs=74.8
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~-~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.+++++|||+|||+ ++++++|+++|+.||.|.+|.|+.++ ++||||+|.+.++|++||+.||+..|+++.|.|++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45789999999999 99999999999999999999999875 78999999999999999999999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+....
T Consensus 107 a~~~~ 111 (229)
T 2adc_A 107 SKHQN 111 (229)
T ss_dssp CSCCC
T ss_pred ecCcc
Confidence 87654
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.61 E-value=3e-15 Score=133.64 Aligned_cols=85 Identities=18% Similarity=0.250 Sum_probs=80.2
Q ss_pred CCCCCEEEEeCCCCCC-CHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGV-TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~-te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
....++|||.|||+.+ ++++|+++|+.||.|..|.|+.+.++.+++||||+|.+.++|.+|++.||+..|+|++|+|.+
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3567899999999995 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 022894 174 VGTNAE 179 (290)
Q Consensus 174 a~~~~~ 179 (290)
+.+...
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 987764
No 185
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.3e-15 Score=114.24 Aligned_cols=80 Identities=16% Similarity=0.376 Sum_probs=69.9
Q ss_pred CCCCEEEEeCCCCCCC-----------HHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCcee
Q 022894 96 EVGTKLYVSNLHPGVT-----------NDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLL 164 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~t-----------e~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l 164 (290)
.++++|+|.||..... +++|+++|++||+|.+|.| .++ .++|||||+|.+.++|++||+.||+..|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4689999999944332 5899999999999999965 555 3799999999999999999999999999
Q ss_pred CCeeeEEEEecCCC
Q 022894 165 DGKPMKIEVVGTNA 178 (290)
Q Consensus 165 ~G~~i~V~~a~~~~ 178 (290)
++++|+|+++.+..
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 99999999998755
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.60 E-value=2.4e-15 Score=134.86 Aligned_cols=82 Identities=20% Similarity=0.341 Sum_probs=76.9
Q ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHhccCCeeEEEEEeCCC--CCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 95 IEVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKN--GRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~-~te~dL~~~F~~~G~i~~v~i~~d~t--g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
....++|||.|||+. +++++|+++|+.||.|..|.|+.+.. +.++|||||+|.+.++|.+|| .||+..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 456799999999999 99999999999999999999999885 999999999999999999999 99999999999999
Q ss_pred EEecCC
Q 022894 172 EVVGTN 177 (290)
Q Consensus 172 ~~a~~~ 177 (290)
+++.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999875
No 187
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.59 E-value=3.4e-15 Score=128.07 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=70.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCe--eEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCe----ee
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGEL--KRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK----PM 169 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i--~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~----~i 169 (290)
+++++|||+|||+.+|+++|+++|++||.| .+|.|+.++ +.+++||||+|.+.++|.+||..||+.+|.+. ++
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 467899999999999999999999999999 889888776 45579999999999999999999999999887 57
Q ss_pred EEEEe
Q 022894 170 KIEVV 174 (290)
Q Consensus 170 ~V~~a 174 (290)
.|.|+
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77665
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.59 E-value=6.1e-15 Score=131.53 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=72.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC-CeeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~-G~~i~V~~ 173 (290)
..+.++|||.|||+.+++++|+++|+.||.|++|.|+.++ ++||||+|.+.++|++||+.||+..|+ |+.|+|+|
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 4567899999999999999999999999999999999664 589999999999999999999999999 99999999
Q ss_pred ec
Q 022894 174 VG 175 (290)
Q Consensus 174 a~ 175 (290)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.58 E-value=1.1e-14 Score=130.12 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=78.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEe
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVV 174 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a 174 (290)
+..++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+|++.||+..|+++.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 357899999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred cCCC
Q 022894 175 GTNA 178 (290)
Q Consensus 175 ~~~~ 178 (290)
.+..
T Consensus 173 ~~~~ 176 (284)
T 3smz_A 173 DAGQ 176 (284)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 7654
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.56 E-value=1.2e-15 Score=126.22 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=73.5
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
...+.++|||+|||+++++++|+++|..||.|..+.+....++.++|||||+|.+.++|++|| +||+..|.++.|.|++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 456789999999999999999999999999876633333337889999999999999999999 5999999999999999
Q ss_pred ecCCCC
Q 022894 174 VGTNAE 179 (290)
Q Consensus 174 a~~~~~ 179 (290)
+.+...
T Consensus 88 ~~~~~~ 93 (175)
T 1fje_B 88 PKGRDS 93 (175)
T ss_dssp CCCSSC
T ss_pred CCCccc
Confidence 886543
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.56 E-value=3.9e-15 Score=125.91 Aligned_cols=78 Identities=33% Similarity=0.446 Sum_probs=73.1
Q ss_pred CCCEEEEeCCCC-CCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~-~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
.+++|||+|||+ .+++++|+++|+.||.|.+|.|+.++ ++||||+|.+.++|++|++.||+..|+++.|.|+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 468999999999 99999999999999999999998775 7899999999999999999999999999999999987
Q ss_pred CCC
Q 022894 176 TNA 178 (290)
Q Consensus 176 ~~~ 178 (290)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=1.4e-14 Score=128.34 Aligned_cols=80 Identities=24% Similarity=0.360 Sum_probs=73.3
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 94 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
.....++|||+|||+++|+++|+++|+.||.|..|.|.. ++|||||+|.+.++|++||+.||+..|.++.|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345678999999999999999999999999999999974 479999999999999999999999999999999999
Q ss_pred ecCCC
Q 022894 174 VGTNA 178 (290)
Q Consensus 174 a~~~~ 178 (290)
+.+..
T Consensus 93 a~~~~ 97 (261)
T 3sde_A 93 ATHGA 97 (261)
T ss_dssp CCCSS
T ss_pred cccCC
Confidence 87643
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=123.01 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=72.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccC-CeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC-CeeeEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIE 172 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G-~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~-G~~i~V~ 172 (290)
.++.++|||.|||+.+++++|+++|+.|| .|..|.|+.+ .++||||+|.+.++|++|++.||+..|+ ++.|+|+
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 35689999999999999999999999999 9999998754 3789999999999999999999999999 9999999
Q ss_pred EecCC
Q 022894 173 VVGTN 177 (290)
Q Consensus 173 ~a~~~ 177 (290)
|++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99764
No 194
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=3.5e-15 Score=114.43 Aligned_cols=72 Identities=22% Similarity=0.398 Sum_probs=64.8
Q ss_pred EeCCCCCCCHHHHHHHH------------hccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeE
Q 022894 103 VSNLHPGVTNDDIRELF------------SEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (290)
Q Consensus 103 V~nL~~~~te~dL~~~F------------~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~ 170 (290)
+.+|++.+++++|+++| ++||+|.+|.|+.+.+++++|||||+|.+.++|++|++.||+..|+|++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56677777887777666 999999999999888889999999999999999999999999999999999
Q ss_pred EEEe
Q 022894 171 IEVV 174 (290)
Q Consensus 171 V~~a 174 (290)
|+++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=2.2e-14 Score=124.66 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=72.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccC-CeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC-CeeeEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD-GKPMKIE 172 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G-~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~-G~~i~V~ 172 (290)
.++.++|||.|||+.+++++|+++|+.|| .|..|.|+.+ .++||||+|.+.++|++||+.||+..|+ ++.|+|+
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 35689999999999999999999999999 9999998653 3789999999999999999999999999 9999999
Q ss_pred EecCC
Q 022894 173 VVGTN 177 (290)
Q Consensus 173 ~a~~~ 177 (290)
|++++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99864
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.54 E-value=2e-14 Score=110.35 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=70.9
Q ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHhccCCeeEEEEEeCCC---CCCceEEEEEecCHHHHHHHHHHhCCc
Q 022894 96 EVGTKLYVSNL--HPGVT--------NDDIRELFSEIGELKRYAIHFDKN---GRPSGSAEVVYARRSDAFAALKRYNNV 162 (290)
Q Consensus 96 ~~~~~l~V~nL--~~~~t--------e~dL~~~F~~~G~i~~v~i~~d~t---g~~kG~afV~F~~~~~A~~Ai~~lng~ 162 (290)
.+++.|.|.|+ +..+. ++||+++|++||+|.+|.|+.++. ..++||+||+|.+.++|++|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 36889999998 33443 368999999999999999998873 368999999999999999999999999
Q ss_pred eeCCeeeEEEEecC
Q 022894 163 LLDGKPMKIEVVGT 176 (290)
Q Consensus 163 ~l~G~~i~V~~a~~ 176 (290)
.|+|+.|+|+++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999864
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.53 E-value=3.1e-14 Score=126.16 Aligned_cols=83 Identities=29% Similarity=0.461 Sum_probs=75.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCC-ceeC---CeeeEE
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNN-VLLD---GKPMKI 171 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng-~~l~---G~~i~V 171 (290)
.+.++|||.|||+.+|+++|+++|+.||.|..|.|+.+.++.++|||||+|.+.++|.+||+.||+ ..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 357899999999999999999999999999999999999999999999999999999999999955 4444 999999
Q ss_pred EEecCCC
Q 022894 172 EVVGTNA 178 (290)
Q Consensus 172 ~~a~~~~ 178 (290)
+++.+..
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9987654
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.53 E-value=2.2e-14 Score=128.50 Aligned_cols=82 Identities=17% Similarity=0.251 Sum_probs=71.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccC-CeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEec
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVG 175 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G-~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~ 175 (290)
..++|||+|||+.+++++|+++|+.|| .|..|.|+.++.+.+++||||+|.+.++|++|++.||+..|+++.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999998888899999999999999999999999999999999999987
Q ss_pred CCC
Q 022894 176 TNA 178 (290)
Q Consensus 176 ~~~ 178 (290)
+..
T Consensus 196 ~~~ 198 (292)
T 2ghp_A 196 PLE 198 (292)
T ss_dssp CC-
T ss_pred CCc
Confidence 655
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.53 E-value=3.7e-14 Score=116.68 Aligned_cols=76 Identities=18% Similarity=0.392 Sum_probs=68.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc----C-------CeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEI----G-------ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~----G-------~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 165 (290)
+.++|||+|||+++|+++|+++|++| | .|.++.+. .+++||||+|.++++|++|+ .||+..|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 57899999999999999999999999 6 67777766 45899999999999999999 99999999
Q ss_pred CeeeEEEEecCCC
Q 022894 166 GKPMKIEVVGTNA 178 (290)
Q Consensus 166 G~~i~V~~a~~~~ 178 (290)
|+.|.|+++....
T Consensus 77 g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 77 GQSLKIRRPHDYQ 89 (172)
T ss_dssp TEECEEECCSSCC
T ss_pred CceeeecCCcccC
Confidence 9999999876543
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.51 E-value=4.4e-14 Score=118.89 Aligned_cols=76 Identities=18% Similarity=0.404 Sum_probs=67.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc----C-------CeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEI----G-------ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~----G-------~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 165 (290)
..++|||+|||+++|+++|+++|+.| | .|.++.+. .+++||||+|.+.++|++|| .||++.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 57999999999999999999999999 5 56666554 56899999999999999999 89999999
Q ss_pred CeeeEEEEecCCC
Q 022894 166 GKPMKIEVVGTNA 178 (290)
Q Consensus 166 G~~i~V~~a~~~~ 178 (290)
|+.|.|+++....
T Consensus 77 g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 77 GQSLKIRRPHDYQ 89 (198)
T ss_dssp TEEEEEECCCCCC
T ss_pred CceEEEeCCCCCC
Confidence 9999999886543
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.49 E-value=1.2e-13 Score=108.36 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=70.5
Q ss_pred CCCEEEEeCCC--CCC---CHHHHHHHHhccCCeeEEEEEeCC-C----CCCceEEEEEecCHHHHHHHHHHhCCceeCC
Q 022894 97 VGTKLYVSNLH--PGV---TNDDIRELFSEIGELKRYAIHFDK-N----GRPSGSAEVVYARRSDAFAALKRYNNVLLDG 166 (290)
Q Consensus 97 ~~~~l~V~nL~--~~~---te~dL~~~F~~~G~i~~v~i~~d~-t----g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 166 (290)
++++|+|.|+- .++ .++||+++|++||+|.+|.|+.++ + ++++||+||+|.+.++|.+|++.||+..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 68999999983 222 368999999999999999999886 2 4678999999999999999999999999999
Q ss_pred eeeEEEEecC
Q 022894 167 KPMKIEVVGT 176 (290)
Q Consensus 167 ~~i~V~~a~~ 176 (290)
+.|.|+++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5.1e-13 Score=101.62 Aligned_cols=76 Identities=22% Similarity=0.263 Sum_probs=64.1
Q ss_pred CCEEEEeCCC-------CCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeE
Q 022894 98 GTKLYVSNLH-------PGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMK 170 (290)
Q Consensus 98 ~~~l~V~nL~-------~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~ 170 (290)
..+|.|.-.. ..+++++|+++|++||+|++|.|+ ++++|||||+|.+.++|++||+.++ .+.+++|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEE
Confidence 4566666543 468999999999999999999988 3679999999999999999998854 46799999
Q ss_pred EEEecCCCC
Q 022894 171 IEVVGTNAE 179 (290)
Q Consensus 171 V~~a~~~~~ 179 (290)
|+|+.+...
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999887653
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.44 E-value=2.1e-13 Score=125.35 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=66.7
Q ss_pred CCCCCCEEEEeC--CCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC---Ce-
Q 022894 94 GIEVGTKLYVSN--LHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD---GK- 167 (290)
Q Consensus 94 ~~~~~~~l~V~n--L~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~---G~- 167 (290)
..+++.+|||+| |++.+||++|+++|++||+|++|.|.. +++||||+|.+.++|++||+.||+.++. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 356789999999 589999999999999999999887653 5799999999999999999999999883 44
Q ss_pred -eeEEEEec
Q 022894 168 -PMKIEVVG 175 (290)
Q Consensus 168 -~i~V~~a~ 175 (290)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57777774
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.37 E-value=3e-12 Score=99.64 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=66.4
Q ss_pred CCCCEEEEeCCC--CCC--------CHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC
Q 022894 96 EVGTKLYVSNLH--PGV--------TNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (290)
Q Consensus 96 ~~~~~l~V~nL~--~~~--------te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 165 (290)
.+++.|.|.|+= ... .++||+++|++||.|.+|.|..+. ++||+||+|.+.++|++|++.||+..|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 357789999982 221 135789999999999999886553 5899999999999999999999999999
Q ss_pred CeeeEEEEecCC
Q 022894 166 GKPMKIEVVGTN 177 (290)
Q Consensus 166 G~~i~V~~a~~~ 177 (290)
|+.|.|+++...
T Consensus 82 GR~i~v~~~~~~ 93 (114)
T 3s6e_A 82 GKMITAAYVPLP 93 (114)
T ss_dssp TEECEEEEECHH
T ss_pred CEEEEEEEEcHH
Confidence 999999998643
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=5.8e-12 Score=98.69 Aligned_cols=83 Identities=23% Similarity=0.290 Sum_probs=72.9
Q ss_pred CCCCCCCCCEEEEeCCCCC-CCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecC-HHHHHHHHHHhC--CceeCC
Q 022894 91 GISGIEVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR-RSDAFAALKRYN--NVLLDG 166 (290)
Q Consensus 91 ~~~~~~~~~~l~V~nL~~~-~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~-~~~A~~Ai~~ln--g~~l~G 166 (290)
+....++++.|||.||++. +++++|+++|++||+|..|.+..+.+ +|||.|.+ .++|++|++.|| +.+|++
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 4456779999999999999 99999999999999999999987752 69999999 899999999995 688999
Q ss_pred eeeEEEEecCCC
Q 022894 167 KPMKIEVVGTNA 178 (290)
Q Consensus 167 ~~i~V~~a~~~~ 178 (290)
..+++++.....
T Consensus 86 ~~~~~evL~Gee 97 (121)
T 1owx_A 86 KEVTWEVLEGEV 97 (121)
T ss_dssp SSEEEEECCHHH
T ss_pred cEEEEEECCCHH
Confidence 999998775433
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1e-11 Score=91.76 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=64.4
Q ss_pred CCCCEEEEeCCCC----CCCH----HHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCe
Q 022894 96 EVGTKLYVSNLHP----GVTN----DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGK 167 (290)
Q Consensus 96 ~~~~~l~V~nL~~----~~te----~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~ 167 (290)
++..||+|.-++. ++-+ .+|.+.|.+||+|..++|..|+ +||+|.+.++|.+||+ ||+..|+|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 4677888887762 2333 5789999999999999999764 8999999999999997 999999999
Q ss_pred eeEEEEecCCC
Q 022894 168 PMKIEVVGTNA 178 (290)
Q Consensus 168 ~i~V~~a~~~~ 178 (290)
.|+|+++.++.
T Consensus 77 ~LkV~lkt~dW 87 (91)
T 2dnr_A 77 TITIALKSPSG 87 (91)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEeCCCCc
Confidence 99999998876
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.2e-10 Score=86.43 Aligned_cols=73 Identities=15% Similarity=0.248 Sum_probs=62.4
Q ss_pred CCCCCEEEEeCCCCC------CCH---HHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC
Q 022894 95 IEVGTKLYVSNLHPG------VTN---DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLD 165 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~------~te---~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 165 (290)
-++..||+|.-++.. ..+ .+|.+.|.+||+|..++|..|+ +||+|.+.++|.+||+ ||+.+|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 357889999988643 222 4688999999999999999774 9999999999999997 9999999
Q ss_pred CeeeEEEEec
Q 022894 166 GKPMKIEVVG 175 (290)
Q Consensus 166 G~~i~V~~a~ 175 (290)
|+.|+|++..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999999754
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.00 E-value=2.5e-09 Score=92.08 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=73.0
Q ss_pred hhHHHhhhcCCCCCCCCCEEEEeCCC-----CCCCHHHHHHHHhccCCeeEEEEEeCC-----CCCCceEEEEEecCHHH
Q 022894 82 LFEDSLRAAGISGIEVGTKLYVSNLH-----PGVTNDDIRELFSEIGELKRYAIHFDK-----NGRPSGSAEVVYARRSD 151 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~V~nL~-----~~~te~dL~~~F~~~G~i~~v~i~~d~-----tg~~kG~afV~F~~~~~ 151 (290)
.+.+.....-.........+.+.|+- ..-.+++|.+.|++||.|.+|.|+.+. +++++|++||+|.+.++
T Consensus 108 ~l~~~l~~~l~~~~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~ 187 (222)
T 3dxb_A 108 QLKEFLDANLAGSAMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASE 187 (222)
T ss_dssp HHHHHHHHHSCCSCCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHH
T ss_pred HHHHHHHhhccccccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHH
Confidence 33333333333334455666676662 234467899999999999999998654 44899999999999999
Q ss_pred HHHHHHHhCCceeCCeeeEEEEecC
Q 022894 152 AFAALKRYNNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 152 A~~Ai~~lng~~l~G~~i~V~~a~~ 176 (290)
|++||+.||+..|+|+.|.|+++..
T Consensus 188 a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 188 THKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHhcCceECCeEEEEEEcCH
Confidence 9999999999999999999999753
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.64 E-value=1.7e-07 Score=71.06 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=67.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc-----CCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeee
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEI-----GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~-----G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i 169 (290)
.+..++|-|-|||..|+++.|+.|++++ +.|++|.+..| .+-|+|+|.+...|-+|.-+|++.+|++++|
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 3457899999999999999999999999 99999999977 4569999999999999999999999999999
Q ss_pred EEE
Q 022894 170 KIE 172 (290)
Q Consensus 170 ~V~ 172 (290)
+|-
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 986
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.19 E-value=5.2e-06 Score=62.55 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=64.5
Q ss_pred CCCEEEEeCCCCCC-CH----HHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEE
Q 022894 97 VGTKLYVSNLHPGV-TN----DDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKI 171 (290)
Q Consensus 97 ~~~~l~V~nL~~~~-te----~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V 171 (290)
-.++|+|.||+..| .. +.++++|..|.++...... ++-.-..|.|.++++|.+|-..|++..++|+.|+|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l-----kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF-----KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE-----TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec-----CcceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 46889999998754 32 5678999999999887666 33446799999999999999999999999999999
Q ss_pred EEecCCC
Q 022894 172 EVVGTNA 178 (290)
Q Consensus 172 ~~a~~~~ 178 (290)
-++++..
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9998543
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=7.8e-05 Score=55.91 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=61.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc-----CCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeee
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEI-----GELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPM 169 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~-----G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i 169 (290)
....++|.|.|||..+.++.|+-+|+.- |+|..|.... ..|+|+|.+.+.|++.++. ..+.|++..|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 4567899999999999999999999872 6888877752 5799999999999998843 4789999999
Q ss_pred EEEEecCC
Q 022894 170 KIEVVGTN 177 (290)
Q Consensus 170 ~V~~a~~~ 177 (290)
.|...-+.
T Consensus 77 sV~P~~~~ 84 (104)
T 2dhx_A 77 SLRPAPPR 84 (104)
T ss_dssp EEEECCCC
T ss_pred EEEcCCCC
Confidence 99764433
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.88 E-value=0.00011 Score=54.19 Aligned_cols=76 Identities=14% Similarity=0.288 Sum_probs=59.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CC--CCceEEEEEecCHHHHHHHHHHhCCceeCCe-----eeE
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NG--RPSGSAEVVYARRSDAFAALKRYNNVLLDGK-----PMK 170 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg--~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~-----~i~ 170 (290)
++|.|.+||+.+||+++.+.+..+..+.....+..+ +. ..-.-|||.|.+.+++....+.++++.+.+. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 689999999999999999999988877666655544 22 2345799999999999999999999887432 335
Q ss_pred EEEe
Q 022894 171 IEVV 174 (290)
Q Consensus 171 V~~a 174 (290)
|++|
T Consensus 82 VE~A 85 (91)
T 1uw4_A 82 VEFA 85 (91)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6655
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.70 E-value=0.00016 Score=53.65 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=47.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022894 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (290)
Q Consensus 96 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (290)
.....++| .+|..+...||.++|+.||.|. |..+.|. .|||.|.+++.|..|+..+.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 34566777 9999999999999999999554 6666664 69999999999999998763
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.40 E-value=0.00016 Score=53.84 Aligned_cols=55 Identities=22% Similarity=0.176 Sum_probs=46.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (290)
...++| ++|.++...||.++|+.|| -..|..+.|. .|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 456677 9999999999999999998 4457777664 69999999999999998775
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.29 E-value=0.00091 Score=51.56 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=57.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC-eeeEEEE
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDG-KPMKIEV 173 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G-~~i~V~~ 173 (290)
....+-|.|-+.|+.. ...|-..|++||+|.+.... ....+-.|.|.+..+|++|| ..|+..|++ -.|-|..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-----~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-----NTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-----SSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-----CCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEE
Confidence 3457889999999874 56677889999999977652 22458999999999999999 569999986 4455655
Q ss_pred e
Q 022894 174 V 174 (290)
Q Consensus 174 a 174 (290)
.
T Consensus 94 ~ 94 (119)
T 1wwh_A 94 C 94 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.04 E-value=0.00088 Score=49.74 Aligned_cols=78 Identities=13% Similarity=0.249 Sum_probs=54.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CC--CCceEEEEEecCHHHHHHHHHHhCCceeCCe-----e
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NG--RPSGSAEVVYARRSDAFAALKRYNNVLLDGK-----P 168 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg--~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~-----~ 168 (290)
.+-+|.|..||+.+||+++.+.+..+-++.....+..+ +- ..-.-|||.|.+.+++..-.+.++++.+.+. +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 46789999999999999988887765443322221111 11 1124589999999999999999999887432 3
Q ss_pred eEEEEe
Q 022894 169 MKIEVV 174 (290)
Q Consensus 169 i~V~~a 174 (290)
..|++|
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 456655
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.36 E-value=0.0022 Score=60.84 Aligned_cols=56 Identities=7% Similarity=0.067 Sum_probs=41.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHH
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ 158 (290)
.++|||. +|..+++.+|.++|++||+|.++.+..++ .-||.|+|.+.+++.+++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHhc
Confidence 5899997 89999999999999999999987665432 36999999999998877643
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.86 E-value=0.007 Score=48.30 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=28.5
Q ss_pred EEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCc
Q 022894 127 RYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV 162 (290)
Q Consensus 127 ~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~ 162 (290)
.+.|..+.. .++|||||+|.+.++|++|++.+++.
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhccc
Confidence 355666654 58999999999999999999988753
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.43 E-value=0.043 Score=42.80 Aligned_cols=77 Identities=13% Similarity=0.216 Sum_probs=53.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeE-EEEEeC--------C-CC-----CCceEEEEEecCHHHHHHHHHHhCC
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFD--------K-NG-----RPSGSAEVVYARRSDAFAALKRYNN 161 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~-v~i~~d--------~-tg-----~~kG~afV~F~~~~~A~~Ai~~lng 161 (290)
..+-|.|-+.|+..+ ..+-+.|++||.|.+ +.+..+ + .. ....+..|+|+++.+|++|| ..|+
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 356677888877654 556678999999875 211110 0 00 12457899999999999999 6799
Q ss_pred ceeCCeeeEEEEec
Q 022894 162 VLLDGKPMKIEVVG 175 (290)
Q Consensus 162 ~~l~G~~i~V~~a~ 175 (290)
..|+|.-|-|....
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999877787664
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.98 E-value=0.0066 Score=48.17 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=35.7
Q ss_pred CCceEEEEEecCHHHHHHHHHHh-CCceeCCeeeEEEEecC
Q 022894 137 RPSGSAEVVYARRSDAFAALKRY-NNVLLDGKPMKIEVVGT 176 (290)
Q Consensus 137 ~~kG~afV~F~~~~~A~~Ai~~l-ng~~l~G~~i~V~~a~~ 176 (290)
..+|+++|+|.+.++|++|++.| |+..|+| .|.|.++..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 56899999999999999999999 9999999 999987654
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.09 E-value=0.27 Score=47.11 Aligned_cols=56 Identities=21% Similarity=0.216 Sum_probs=45.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (290)
....++|+ +|..+...+|.++|+.||.| +|.++.+ -.|||.|.+.+.|..+++.++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 45677776 88899999999999999954 4555533 269999999999999999885
No 222
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=86.29 E-value=4.3 Score=29.30 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=47.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022894 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (290)
Q Consensus 95 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (290)
....|-|.|-|+|..+-..++--.....|---.|..+ .|.|.|.|.+.++...||..|-
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHHE
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHHH
Confidence 4578999999999999998887666666655556554 4679999999999999998873
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=81.41 E-value=3.1 Score=28.52 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=42.2
Q ss_pred EEEEeCC-CCCCCHHHHHHHHhccCC-----eeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEE
Q 022894 100 KLYVSNL-HPGVTNDDIRELFSEIGE-----LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 100 ~l~V~nL-~~~~te~dL~~~F~~~G~-----i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~ 173 (290)
+|||.-= -..+...+|..++..-+. |-.|.|. ..|.||+-.. +.|..+++.|+...+.++.+.|+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEE
Confidence 4555311 234666777777764443 4456665 2378998876 468889999999999999999987
Q ss_pred ec
Q 022894 174 VG 175 (290)
Q Consensus 174 a~ 175 (290)
+.
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 224
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=68.23 E-value=16 Score=23.96 Aligned_cols=56 Identities=11% Similarity=0.027 Sum_probs=43.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHh
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 159 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~l 159 (290)
..+|.|.++.-.--...|++.+.. -.|..+.+... .+.+.|+|.+.++..++|+.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----CCEEEEEECCHHHHHHHHHHc
Confidence 357889999888788899999988 77887777643 467889998777777788664
No 225
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=64.09 E-value=1.4 Score=32.71 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=0.0
Q ss_pred CCCEEEEeCCCCCCCHHH
Q 022894 97 VGTKLYVSNLHPGVTNDD 114 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~d 114 (290)
..++|||+|||+++|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 457899999999999874
No 226
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=62.40 E-value=15 Score=29.71 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=35.9
Q ss_pred CEEEEeCCCC-C--------CCHHHHHHHH--hccCCeeEEEEEeCCCCCCceEEEEEecCHH
Q 022894 99 TKLYVSNLHP-G--------VTNDDIRELF--SEIGELKRYAIHFDKNGRPSGSAEVVYARRS 150 (290)
Q Consensus 99 ~~l~V~nL~~-~--------~te~dL~~~F--~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~ 150 (290)
-++.|-|+|. . .+..+|.+.| ..|.+++ |..++++.+ +.|+|.|+|.+.-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCCh
Confidence 3566778876 1 3457899977 8997765 666777655 5789999999743
No 227
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=51.69 E-value=44 Score=21.49 Aligned_cols=56 Identities=9% Similarity=0.219 Sum_probs=42.1
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEec----CHHHHHHHHHHh
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA----RRSDAFAALKRY 159 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~----~~~~A~~Ai~~l 159 (290)
.++.|.++.-.--...|+..+...-.|..+.+... .+.+.|+|. +.++..++|+.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL-----QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG-----GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46788888876667789999998878888777643 456889885 566777777664
No 228
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=51.48 E-value=9.2 Score=37.54 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=42.4
Q ss_pred CCCCCCCHHHHHHHHh----ccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHh
Q 022894 105 NLHPGVTNDDIRELFS----EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRY 159 (290)
Q Consensus 105 nL~~~~te~dL~~~F~----~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~l 159 (290)
.++.+.+--||..+|- .+|.|+++.|...+......+++|.|.+.++|.+|+..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 3455556668999983 688899888776654455678899999999999988766
No 229
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=43.19 E-value=6.2 Score=29.88 Aligned_cols=8 Identities=25% Similarity=0.563 Sum_probs=4.1
Q ss_pred CHHHHHHh
Q 022894 8 SLDDIIKS 15 (290)
Q Consensus 8 slddii~~ 15 (290)
.+|.++.+
T Consensus 75 ~~d~~l~~ 82 (119)
T 1b34_A 75 PLDTLLVD 82 (119)
T ss_dssp CHHHHTC-
T ss_pred ccchhHhh
Confidence 56666644
No 230
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B
Probab=41.08 E-value=17 Score=24.73 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=15.2
Q ss_pred CCChhHHHHHHHHHHHhh
Q 022894 270 DKSADDLDKELDNYHAEA 287 (290)
Q Consensus 270 ~~~~~~ld~el~~y~~~~ 287 (290)
.+..+||++|||+.-.|.
T Consensus 7 diDE~eL~aELdaL~~e~ 24 (69)
T 3uly_B 7 ELDEDDLEAELDALGDEL 24 (69)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 688999999999877653
No 231
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=39.79 E-value=62 Score=19.61 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=36.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEec---CHHHHHHHHHHh
Q 022894 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA---RRSDAFAALKRY 159 (290)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~---~~~~A~~Ai~~l 159 (290)
++.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|. +.++..++++.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE-----KKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT-----TTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC-----CCEEEEEECCCCCHHHHHHHHHHc
Confidence 4667777655556778888888877887777643 456788886 345555666543
No 232
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=39.56 E-value=41 Score=21.25 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=39.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEec---CHHHHHHHHHH
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA---RRSDAFAALKR 158 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~---~~~~A~~Ai~~ 158 (290)
.++.|.++.-..-...|+..+...-.|..+.+... ...+.|+|. +.++..++|+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA-----LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCHHHHHHHHHH
Confidence 46788888876667889999998878888877654 346788874 34556666654
No 233
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=37.66 E-value=56 Score=23.88 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHHHH-hccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeeeEEEEecCCC
Q 022894 105 NLHPGVTNDDIRELF-SEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNA 178 (290)
Q Consensus 105 nL~~~~te~dL~~~F-~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~~l~G~~i~V~~a~~~~ 178 (290)
-++.-++-+||..-. ..||.-.++....+ -..|-..+.+|..+||+.|+-. ..-+.|+|-+..++.
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~-------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~~ 89 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN-------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVINGS 89 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS-------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECCC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc-------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCCC
Confidence 356778888876544 56887665544411 3688999999999999988654 345567776665554
No 234
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.45 E-value=66 Score=22.75 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=36.7
Q ss_pred EEeCCCCCCCHHHHHHHHhcc-C-CeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHH
Q 022894 102 YVSNLHPGVTNDDIRELFSEI-G-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158 (290)
Q Consensus 102 ~V~nL~~~~te~dL~~~F~~~-G-~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ 158 (290)
|+-.++...+..+|++.++.+ + .|..|..+.-+.+..+ |||++..-.+|......
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KK--A~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKK--AYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEE--EEEEECTTSCHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceE--EEEEcCCCCcHHHHHHh
Confidence 344478889999999888764 3 4456665554444434 99999877666654433
No 235
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=35.62 E-value=3.2 Score=38.77 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=10.1
Q ss_pred HHHHHhccCCeeEE
Q 022894 115 IRELFSEIGELKRY 128 (290)
Q Consensus 115 L~~~F~~~G~i~~v 128 (290)
|.+||..+++|..|
T Consensus 9 L~~lF~p~pPl~~~ 22 (437)
T 3pgw_S 9 LLALFAPRDPIPYL 22 (437)
T ss_pred HHHhcCCCCCCcCC
Confidence 66777777777765
No 236
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=35.30 E-value=78 Score=19.45 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=38.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecC---HHHHHHHHHHh
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR---RSDAFAALKRY 159 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~---~~~A~~Ai~~l 159 (290)
.++.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .++...+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA-----LEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc-----CCEEEEEECCCCCHHHHHHHHHHc
Confidence 46788888765556778888988878888877643 3568888874 34445556544
No 237
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=34.90 E-value=80 Score=19.43 Aligned_cols=54 Identities=11% Similarity=0.239 Sum_probs=38.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecC---HHHHHHHHHH
Q 022894 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR---RSDAFAALKR 158 (290)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~---~~~A~~Ai~~ 158 (290)
++.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .++...+|+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP-----KGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT-----TTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc-----CCEEEEEECCCCCHHHHHHHHHH
Confidence 5778888766666788899988877888877644 3467788864 3455566654
No 238
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=34.69 E-value=1e+02 Score=22.38 Aligned_cols=75 Identities=12% Similarity=0.231 Sum_probs=41.6
Q ss_pred CCEEEEeCCCCCCCHHH--HHHHHh----c-c---C-----CeeEEEEEeCC-C--CCCceEEEEEecCHH---HHHHHH
Q 022894 98 GTKLYVSNLHPGVTNDD--IRELFS----E-I---G-----ELKRYAIHFDK-N--GRPSGSAEVVYARRS---DAFAAL 156 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~d--L~~~F~----~-~---G-----~i~~v~i~~d~-t--g~~kG~afV~F~~~~---~A~~Ai 156 (290)
-+.|.|-+||....+.. +..||. + | + .|..+.-...+ + ....-.-.|.|.... ...+|.
T Consensus 3 r~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaa 82 (100)
T 2w7a_A 3 MGNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 82 (100)
T ss_dssp TTEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHH
T ss_pred ccceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 47899999998733222 344432 2 2 1 23333322222 1 112235566776654 455555
Q ss_pred HHhCCceeCCeeeEEE
Q 022894 157 KRYNNVLLDGKPMKIE 172 (290)
Q Consensus 157 ~~lng~~l~G~~i~V~ 172 (290)
.+...+++.|.+|.+.
T Consensus 83 r~k~~vtykg~pirls 98 (100)
T 2w7a_A 83 REKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHHCCEEETTEEEEEE
T ss_pred HHhCceeeCCcceeec
Confidence 5666788999998875
No 239
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=33.49 E-value=42 Score=31.41 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHh----ccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022894 107 HPGVTNDDIRELFS----EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (290)
Q Consensus 107 ~~~~te~dL~~~F~----~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (290)
..+.+.-||..+|- .+|.|.++.+...+.......+++.|.+.++|.+++..+.
T Consensus 195 ~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~ 252 (476)
T 3pm9_A 195 KKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQ 252 (476)
T ss_dssp SCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHHH
T ss_pred cCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHHH
Confidence 33444456777763 5677888877665544556678999999999998887763
No 240
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=33.43 E-value=19 Score=34.03 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=31.2
Q ss_pred HHHHHH--hccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHH
Q 022894 114 DIRELF--SEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALK 157 (290)
Q Consensus 114 dL~~~F--~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~ 157 (290)
+|..|| +.+|.|+++.+...+.......+++.|.+.++|.+|++
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~ 262 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVD 262 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHH
Confidence 567777 36899998887666544445577899998777666443
No 241
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=32.63 E-value=1.1e+02 Score=20.15 Aligned_cols=57 Identities=14% Similarity=0.225 Sum_probs=41.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEec----CHHHHHHHHHHh
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA----RRSDAFAALKRY 159 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~----~~~~A~~Ai~~l 159 (290)
..+|.|.++.-..-...|+..+...-.|..+.+... ...+.|+|. +.++...+|+.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD-----NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST-----TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 456889998877677889999998888887777543 356888885 345566667654
No 242
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=32.38 E-value=86 Score=19.03 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=39.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecC----HHHHHHHHHH
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKR 158 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~ 158 (290)
.++.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .++...+++.
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK-----KEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHH
Confidence 36788888877677889999988877887777643 4568888863 4455555644
No 243
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=31.09 E-value=95 Score=19.13 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=38.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecC----HHHHHHHHHHh
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (290)
.+|.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .++...+|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA-----EGTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46788888765555678888888877887777643 4567888863 45556666553
No 244
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=30.24 E-value=5.8 Score=31.29 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=16.7
Q ss_pred HHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEec
Q 022894 112 NDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA 147 (290)
Q Consensus 112 e~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~ 147 (290)
++|+.+||...|.|+... ..+||+||+.+
T Consensus 1 ~~~~~~l~~~~G~Vkwfn-------~~kGfGFI~~~ 29 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFN-------VRMGFGFLSMT 29 (148)
T ss_dssp -----CCEEEEEEEEEEE-------TTTTEEEEEEE
T ss_pred CCcccccccceeEEEEEE-------CCCCeeEEeeC
Confidence 356677777777776332 23889999865
No 245
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=29.79 E-value=91 Score=19.24 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=38.1
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecC----HHHHHHHHHHh
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (290)
.++.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .++...+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA-----NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT-----TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc-----CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 46778887655455678888888777777777643 4568888863 45566666654
No 246
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=29.75 E-value=1.5e+02 Score=20.99 Aligned_cols=56 Identities=9% Similarity=0.138 Sum_probs=41.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecC----HHHHHHHHHHh
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (290)
.+|.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .++...+|+.+
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~-----~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA-----TGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT-----TTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46788888877777889999998877888877643 4578899874 35556666554
No 247
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=29.21 E-value=52 Score=28.26 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=24.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEE
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRY 128 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v 128 (290)
..-+.|.|||+.++..-|..++.. ..+..+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 356789999999999999999987 555443
No 248
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=28.89 E-value=1e+02 Score=18.92 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=39.8
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecC----HHHHHHHHHHh
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (290)
.++.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .++...+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE-----TRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 45778888776667789999988878888777643 4568888863 45556666554
No 249
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=34.91 E-value=12 Score=27.74 Aligned_cols=61 Identities=23% Similarity=0.246 Sum_probs=35.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCC-CCCCceEEE--EEecCHHHHHHHHHHhCCce
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSGSAE--VVYARRSDAFAALKRYNNVL 163 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~-tg~~kG~af--V~F~~~~~A~~Ai~~lng~~ 163 (290)
..+|-|..+ .++++|..+..+.. +..+.+.... .++. -|.. =.|.+.++|.+|++.|....
T Consensus 25 ~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 25 HYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 445544333 35666777776664 3444444322 3332 2332 27999999999999886433
No 250
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=28.32 E-value=1.4e+02 Score=21.77 Aligned_cols=55 Identities=22% Similarity=0.189 Sum_probs=33.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHhc-------cCCeeEEEEEeCCCCCCce--EE-EEEecCHHHHHH
Q 022894 100 KLYVSNLHPGVTNDDIRELFSE-------IGELKRYAIHFDKNGRPSG--SA-EVVYARRSDAFA 154 (290)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~-------~G~i~~v~i~~d~tg~~kG--~a-fV~F~~~~~A~~ 154 (290)
.|.+-.|...++++++.++.+. .-.|+.+.+-.+.+...++ ++ +++|++.++.++
T Consensus 24 HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~~~~g~d~~l~~~F~s~edl~~ 88 (116)
T 3bgu_A 24 HIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLGLAAGNYDFAVVADLDGEDGFRA 88 (116)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCSCSTTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCCCCCCeeEEEEEEECCHHHHHH
Confidence 3444468888888876655433 3456677777665433232 33 468888766554
No 251
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=27.97 E-value=91 Score=21.09 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=39.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecC----HHHHHHHHHHh
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (290)
.+|.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .++..++|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~-----~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE-----NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT-----TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc-----CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 46778887765556778888988878888877644 4568888863 45566667654
No 252
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=27.87 E-value=1.6e+02 Score=22.71 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=32.0
Q ss_pred HHHHHhccCCeeEEEEEeCC--CCC--------------CceEEEEEecCHHHHHHHHHH
Q 022894 115 IRELFSEIGELKRYAIHFDK--NGR--------------PSGSAEVVYARRSDAFAALKR 158 (290)
Q Consensus 115 L~~~F~~~G~i~~v~i~~d~--tg~--------------~kG~afV~F~~~~~A~~Ai~~ 158 (290)
-.++|.+||.+..+.+.-|. .|+ .--|.+|+|.+.+...++.++
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 34789999998877655442 232 345889999999998888754
No 253
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=27.69 E-value=1.4e+02 Score=21.04 Aligned_cols=34 Identities=15% Similarity=0.020 Sum_probs=25.3
Q ss_pred eeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhCCc
Q 022894 125 LKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNV 162 (290)
Q Consensus 125 i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~lng~ 162 (290)
|..+.+.. ...||.||+++..++...+|+...++
T Consensus 40 i~~v~vP~----~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASE----SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECT----TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEec----ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 44554442 37999999999999888888776653
No 254
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=27.59 E-value=1.8e+02 Score=21.36 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=35.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHh-------ccCCeeEEEEEeCCC--CCCce--EE-EEEecCHHHHHHH
Q 022894 99 TKLYVSNLHPGVTNDDIRELFS-------EIGELKRYAIHFDKN--GRPSG--SA-EVVYARRSDAFAA 155 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~-------~~G~i~~v~i~~d~t--g~~kG--~a-fV~F~~~~~A~~A 155 (290)
.-|.+-.|...++++++.++.. +.-.|+++.+-.+.+ +..++ ++ +++|++.++.+.-
T Consensus 22 ~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y 90 (121)
T 3bb5_A 22 YHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAY 90 (121)
T ss_dssp EEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHH
Confidence 4455557888888887655543 355677777766653 33333 33 4689988766543
No 255
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=27.26 E-value=1.2e+02 Score=19.00 Aligned_cols=55 Identities=9% Similarity=0.189 Sum_probs=38.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecC----HHHHHHHHHHh
Q 022894 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (290)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (290)
+|.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .++...+|+.+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE-----EKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5778887765556778888888877887777643 4568888863 45566667654
No 256
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=27.24 E-value=1.2e+02 Score=19.20 Aligned_cols=57 Identities=9% Similarity=0.185 Sum_probs=41.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecC----HHHHHHHHHHh
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (290)
..++.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .++..++|+.+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE-----EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG-----GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc-----CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 356889999887778889999988877777776643 4568888864 45566667654
No 257
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=26.52 E-value=2.3e+02 Score=23.86 Aligned_cols=77 Identities=13% Similarity=0.219 Sum_probs=42.9
Q ss_pred CCCEEEEeCCCCCCC--HHHHHHHHh-----ccCCe--------eEEEEEeCC-C--CCCceEEEEEecCHH---HHHHH
Q 022894 97 VGTKLYVSNLHPGVT--NDDIRELFS-----EIGEL--------KRYAIHFDK-N--GRPSGSAEVVYARRS---DAFAA 155 (290)
Q Consensus 97 ~~~~l~V~nL~~~~t--e~dL~~~F~-----~~G~i--------~~v~i~~d~-t--g~~kG~afV~F~~~~---~A~~A 155 (290)
.-+.|.|-+||.... +..+..||. .|-.+ ..+.-...+ + ....-.-.|.|.... ...+|
T Consensus 51 Rr~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILka 130 (233)
T 2yko_A 51 KRPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRA 130 (233)
T ss_dssp TTTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHH
T ss_pred cccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHH
Confidence 468999999999876 444555543 24322 222111111 0 011223566666554 44555
Q ss_pred HHHhCCceeCCeeeEEEE
Q 022894 156 LKRYNNVLLDGKPMKIEV 173 (290)
Q Consensus 156 i~~lng~~l~G~~i~V~~ 173 (290)
......+++.|.+|.+..
T Consensus 131 aR~k~~vtykG~pIrlsa 148 (233)
T 2yko_A 131 AREKGRVTLKGKPIRLTV 148 (233)
T ss_dssp HHTTSCEEETTEEEEEEE
T ss_pred HHHhcccccCCCceEEeC
Confidence 555567889999988764
No 258
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=26.05 E-value=1.2e+02 Score=18.76 Aligned_cols=57 Identities=11% Similarity=0.160 Sum_probs=40.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecC----HHHHHHHHHHh
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (290)
..++.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .+....+++.+
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 65 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA-----TNKAHIKYDPEIIGPRDIIHTIESL 65 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT-----TTEEEEEECTTTTHHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 457889999877777889999988877888777643 4568888864 23444555443
No 259
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=24.92 E-value=72 Score=19.78 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=34.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHH
Q 022894 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKR 158 (290)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ 158 (290)
++.|.++.-..-...|+..+... .|..+.+... .+.+.|+|...++...+++.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~-----~~~~~v~~~~~~~i~~~i~~ 56 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVE-----EKKVVVETENLDSVLKKLEE 56 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETT-----TTEEEEECSCHHHHHHHHHT
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECC-----CCEEEEEECCHHHHHHHHHH
Confidence 46676766554556788888888 7887777643 45688888765344455543
No 260
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=24.68 E-value=1.9e+02 Score=20.38 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=33.2
Q ss_pred EEEeCCCCCCCHHHHHHHH-------hccCCeeEEEEEeCCCCCCce---EEEEEecCHHHHHH
Q 022894 101 LYVSNLHPGVTNDDIRELF-------SEIGELKRYAIHFDKNGRPSG---SAEVVYARRSDAFA 154 (290)
Q Consensus 101 l~V~nL~~~~te~dL~~~F-------~~~G~i~~v~i~~d~tg~~kG---~afV~F~~~~~A~~ 154 (290)
|.+-.|...++++++.++. ...-.|+.+.+-.+.+...++ ..+++|++.++.+.
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVAARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCCTTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCCCCCCCccEEEEEEECCHHHHHH
Confidence 3334578888877655443 235677888887776433232 33568998876543
No 261
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=24.36 E-value=1.3e+02 Score=18.45 Aligned_cols=55 Identities=11% Similarity=0.190 Sum_probs=35.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEec---CHHHHHHHHHHh
Q 022894 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA---RRSDAFAALKRY 159 (290)
Q Consensus 100 ~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~---~~~~A~~Ai~~l 159 (290)
++.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|. +.+....+++.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLV-----TNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTT-----TTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCHHHHHHHHHHC
Confidence 5678777655555678888888777776665432 456788886 345556666554
No 262
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=24.29 E-value=1.4e+02 Score=21.72 Aligned_cols=56 Identities=9% Similarity=0.176 Sum_probs=41.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEec----CHHHHHHHHHHh
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA----RRSDAFAALKRY 159 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~----~~~~A~~Ai~~l 159 (290)
.+|.|.++.-..-...|+..+...-.|..+.+... ...+.|+|. +.++..++|+.+
T Consensus 82 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 82 IELTITGMTCASCVHNIESKLTRTNGITYASVALA-----TSKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETT-----TTEEEEECCTTTSCHHHHHHHHHHH
T ss_pred eEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcC-----CCEEEEEECCCCCCHHHHHHHHHhC
Confidence 46888888866666778888888877888877643 456888886 456667777665
No 263
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=24.28 E-value=40 Score=32.51 Aligned_cols=54 Identities=7% Similarity=0.121 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHh----ccCCeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022894 107 HPGVTNDDIRELFS----EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYN 160 (290)
Q Consensus 107 ~~~~te~dL~~~F~----~~G~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~~ln 160 (290)
+.+.+.-||..+|- .+|.|.++.+...+.....-++++.|.+.++|.+|+..+.
T Consensus 282 ~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 282 ARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp -----CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccCCCcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHH
Confidence 33334456777763 5678888877665544445678999999999999887664
No 264
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=24.24 E-value=33 Score=29.67 Aligned_cols=34 Identities=12% Similarity=-0.003 Sum_probs=25.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEE
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIH 131 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~ 131 (290)
...+.|.|||+.++..-|..++.....+..+.++
T Consensus 114 ~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 114 PSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred CceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 3467899999999999999999765455544443
No 265
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=24.22 E-value=1.8e+02 Score=21.28 Aligned_cols=57 Identities=14% Similarity=0.239 Sum_probs=41.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEec----CHHHHHHHHHHh
Q 022894 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYA----RRSDAFAALKRY 159 (290)
Q Consensus 98 ~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~----~~~~A~~Ai~~l 159 (290)
..+|.|.++.-..-...|+..+...-.|..+.+... ...+.|+|. +.++..++|+.+
T Consensus 75 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 75 KAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA-----LETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETT-----TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred ccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEcc-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 346888888877777889999988877877766543 346888886 456667777665
No 266
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=23.51 E-value=2e+02 Score=20.32 Aligned_cols=64 Identities=8% Similarity=-0.159 Sum_probs=40.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEe-CC-CCCCceEEEEEec--CHHHHHHHHHHhC
Q 022894 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHF-DK-NGRPSGSAEVVYA--RRSDAFAALKRYN 160 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~-d~-tg~~kG~afV~F~--~~~~A~~Ai~~ln 160 (290)
....|.|.-....+.+..|.++...|+.-.+|..-. +. .+..-|+-+|++. +.++.++|++.|.
T Consensus 19 ~~~lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~ 86 (98)
T 3ced_A 19 DAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELI 86 (98)
T ss_dssp TCEEEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHH
Confidence 344555554445567777888888887544332111 22 4456788899988 4677888888774
No 267
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=23.16 E-value=99 Score=19.64 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=38.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecC----HHHHHHHHHHh
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (290)
.+|.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .++..++|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALM-----AGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTT-----TTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 36778888766667788898888777776655432 3457888863 45566667654
No 268
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=23.13 E-value=1.4e+02 Score=18.54 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=40.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecC--HHHHHHHHHHh
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR--RSDAFAALKRY 159 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~--~~~A~~Ai~~l 159 (290)
.++.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .++...+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~-----~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFA-----TEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETT-----TTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEec-----CCEEEEEECCCCHHHHHHHHHHc
Confidence 46788998876667789999988877888777643 3567888875 34455566554
No 269
>2gpv_G Nuclear receptor corepressor 2; estrogen related receptor, ERR, ERRG, ESRRG, nuclear recepto steroid receptor, SMRT, tamoxifen, transcription; HET: OHT; 2.85A {Homo sapiens}
Probab=22.68 E-value=38 Score=18.00 Aligned_cols=10 Identities=40% Similarity=0.803 Sum_probs=7.8
Q ss_pred CCCHHHHHHh
Q 022894 6 DMSLDDIIKS 15 (290)
Q Consensus 6 d~slddii~~ 15 (290)
+|-|++||..
T Consensus 2 n~gleaiirk 11 (26)
T 2gpv_G 2 NMGLEAIIRK 11 (26)
T ss_pred ccCHHHHHHH
Confidence 6788898864
No 270
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=22.59 E-value=63 Score=27.31 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=22.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeE
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKR 127 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~ 127 (290)
..+.|.|||+.++...|..++...-.+..
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~ 119 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIAD 119 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcce
Confidence 46889999999999999888875433443
No 271
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=21.13 E-value=1.6e+02 Score=21.66 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHh-ccCC---eeEEEEEeCC--CCCCceEEEEEecCHHHHHH
Q 022894 108 PGVTNDDIRELFS-EIGE---LKRYAIHFDK--NGRPSGSAEVVYARRSDAFA 154 (290)
Q Consensus 108 ~~~te~dL~~~F~-~~G~---i~~v~i~~d~--tg~~kG~afV~F~~~~~A~~ 154 (290)
.+++..+|++-+. .|.. ++-|.=+... .+++.|||.| |++.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4678888877665 3433 2223222233 4577788765 677766654
No 272
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=21.07 E-value=1.5e+02 Score=18.17 Aligned_cols=56 Identities=9% Similarity=0.201 Sum_probs=39.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecC----HHHHHHHHHHh
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (290)
.++.|.++.-..-...|+..+...-.|..+.+... ...+.|+|.. .++...+++.+
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLA-----TETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGG-----GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46889998877667779999988777877776543 4567888863 45556666554
No 273
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=20.92 E-value=1.4e+02 Score=22.49 Aligned_cols=36 Identities=11% Similarity=-0.111 Sum_probs=20.9
Q ss_pred cCCeeEEEEEeCCCCCCceEEEEE-ecCHHHHHHHHHHhC
Q 022894 122 IGELKRYAIHFDKNGRPSGSAEVV-YARRSDAFAALKRYN 160 (290)
Q Consensus 122 ~G~i~~v~i~~d~tg~~kG~afV~-F~~~~~A~~Ai~~ln 160 (290)
+=.|..|.|..|- +...+||. |-+.++.+.+++.|+
T Consensus 43 ~vtVt~V~vS~Dl---~~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDF---SACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTS---CCEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCC---cEEEEEEEecCChhhHHHHHHHHH
Confidence 3478888888773 34456666 555554444444443
No 274
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=20.89 E-value=1.5e+02 Score=23.93 Aligned_cols=50 Identities=16% Similarity=-0.009 Sum_probs=32.8
Q ss_pred CCCEEEEeCCCCCCCHHH--------HHHHHhccCCeeEEEEEeCCCCCCceEEEEEecC
Q 022894 97 VGTKLYVSNLHPGVTNDD--------IRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR 148 (290)
Q Consensus 97 ~~~~l~V~nL~~~~te~d--------L~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~ 148 (290)
...+=||=-||..++.++ ++++|..+|-|.++.|+.+.. ..-.|.|-|.+
T Consensus 69 ~lare~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~--~NpHaHim~t~ 126 (185)
T 2ns6_A 69 RLFKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGG--ENPHCHLMISE 126 (185)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETT--TEEEEEEEECC
T ss_pred eEEEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCC--CCceEEEEEee
Confidence 344555667999999876 445577788888888886432 22356666654
No 275
>2i3t_B Spindle assembly checkpoint component; WD40 protein, beta propeller, mitotic spindle checkpoint, cell cycle; 2.80A {Saccharomyces cerevisiae}
Probab=20.66 E-value=46 Score=21.30 Aligned_cols=15 Identities=13% Similarity=0.521 Sum_probs=11.2
Q ss_pred CCCCCCHHHHHHhcc
Q 022894 3 THVDMSLDDIIKSRK 17 (290)
Q Consensus 3 ~~ld~slddii~~~~ 17 (290)
..+.+||+||++.++
T Consensus 23 ~~~E~sfeEllA~sR 37 (54)
T 2i3t_B 23 GRLEFSLEEVLAISR 37 (54)
T ss_dssp --CBCCHHHHHHHTT
T ss_pred ccceeeHHHHHHHhc
Confidence 457999999998763
No 276
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=20.61 E-value=1.4e+02 Score=17.65 Aligned_cols=56 Identities=13% Similarity=0.224 Sum_probs=37.1
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEEEEEeCCCCCCceEEEEEecC----HHHHHHHHHHh
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYAR----RSDAFAALKRY 159 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v~i~~d~tg~~kG~afV~F~~----~~~A~~Ai~~l 159 (290)
.++.|.++.-..-...|+..+...-.|..+.+... .+.+.|+|.. .+....+++.+
T Consensus 4 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (69)
T 2qif_A 4 KTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLE-----AGKVDVSFDADKVSVKDIADAIEDQ 63 (69)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35778887755455668888888777877776533 4567888863 44555666543
No 277
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=20.43 E-value=1.2e+02 Score=23.55 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=35.3
Q ss_pred EEeCCCCCCCHHHHHHHHhc-cC-CeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHH
Q 022894 102 YVSNLHPGVTNDDIRELFSE-IG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALK 157 (290)
Q Consensus 102 ~V~nL~~~~te~dL~~~F~~-~G-~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~ 157 (290)
||--++...+..+|++.++. |+ .|..|..+.-+.+..+ |||.+..-.+|.....
T Consensus 82 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KK--AyV~L~~~~daldvAn 137 (142)
T 3u5e_X 82 LVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKK--AYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEE--EEEEECTTCCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceE--EEEEeCCCCcHHHHHH
Confidence 34447888999999888775 33 4556666555544444 9999987666555433
No 278
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=20.40 E-value=1.3e+02 Score=21.85 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHhc-cCC---eeEEE-EEeCC-CCCCceEEEEEecCHHHHHH
Q 022894 108 PGVTNDDIRELFSE-IGE---LKRYA-IHFDK-NGRPSGSAEVVYARRSDAFA 154 (290)
Q Consensus 108 ~~~te~dL~~~F~~-~G~---i~~v~-i~~d~-tg~~kG~afV~F~~~~~A~~ 154 (290)
.+++..+|++-+.+ |.. ++-|. +...- .+++.|||.| |++.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk 79 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQ 79 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56788888877753 332 22222 22222 4567777765 666665544
No 279
>1vyi_A RNA polymerase alpha subunit; transferase, replication, transcription, RNA-directed RNA polymerase, phosphorylation; HET: GOL; 1.5A {Rabies virus} SCOP: d.293.1.1
Probab=20.36 E-value=41 Score=24.34 Aligned_cols=16 Identities=44% Similarity=0.729 Sum_probs=13.0
Q ss_pred CCCCCHHHHHHhccCC
Q 022894 4 HVDMSLDDIIKSRKKS 19 (290)
Q Consensus 4 ~ld~slddii~~~~~~ 19 (290)
.|-|-||||++..+.-
T Consensus 44 qlkmnlDdIv~~a~~i 59 (112)
T 1vyi_A 44 QLKMNLDDIVKEAKNV 59 (112)
T ss_dssp GGCCCHHHHHHHHTTS
T ss_pred HHhccHHHHHHHHhcC
Confidence 5789999999987543
No 280
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=20.35 E-value=79 Score=20.55 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=14.5
Q ss_pred CCChhHHHHHHHHHHHhh
Q 022894 270 DKSADDLDKELDNYHAEA 287 (290)
Q Consensus 270 ~~~~~~ld~el~~y~~~~ 287 (290)
.+..+||++||+..-.|.
T Consensus 19 diDEdEL~aELe~LeqE~ 36 (57)
T 2lxm_B 19 ELDEDDLEAELDALGDEL 36 (57)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 588899999999876553
No 281
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=20.23 E-value=1.2e+02 Score=23.80 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=34.8
Q ss_pred EeCCCCCCCHHHHHHHHhc-cC-CeeEEEEEeCCCCCCceEEEEEecCHHHHHHHHH
Q 022894 103 VSNLHPGVTNDDIRELFSE-IG-ELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALK 157 (290)
Q Consensus 103 V~nL~~~~te~dL~~~F~~-~G-~i~~v~i~~d~tg~~kG~afV~F~~~~~A~~Ai~ 157 (290)
|--++...+..+|++.++. |+ .|..|..+.-+.+..+ |||.+..-.+|.....
T Consensus 91 vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KK--AyV~La~~~dAldvAn 145 (150)
T 4a17_R 91 VFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKK--AYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEE--EEEEECSSSCHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEE--EEEEcCCCCcHHHHHH
Confidence 3347788999999888775 33 4556666555555444 9999987666655433
No 282
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=20.16 E-value=69 Score=26.91 Aligned_cols=30 Identities=17% Similarity=-0.059 Sum_probs=23.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeeEE
Q 022894 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRY 128 (290)
Q Consensus 99 ~~l~V~nL~~~~te~dL~~~F~~~G~i~~v 128 (290)
..+.|.|||+.++..-|..++.....+..+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~ 125 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLA 125 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceE
Confidence 458899999999999999999865444433
Done!