BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022896
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 116/286 (40%), Gaps = 38/286 (13%)
Query: 16 VVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASL-RAMVEPSFGKRSVINHT 71
V +IG GV G A++L+ F ++LI + + SL +A+++ S + ++
Sbjct: 5 VAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEA 64
Query: 72 DYLVNGRI--VASP---AINITENEVLTAEGRRVVYDYLVIATGHK--------DPVPKT 118
D+ RI + P A+++ + +G + D +VIATG + +P
Sbjct: 65 DWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPGV 124
Query: 119 RTER-LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-EF 176
T R Q SA +LIVGGG G E+A VT++ G LL
Sbjct: 125 VTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVA--TTARKLGLSVTILEAGDELLVRV 182
Query: 177 IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG-KPV 235
+G + G R L V V+LG V S + + S G + AD +C G +P
Sbjct: 183 LGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEP- 241
Query: 236 GSDWLKDTILKDSLDTHGMLMVDENLRVKG-----QKNIFAIGDIT 276
D L L D + V K +FA+GD+
Sbjct: 242 ----------ADQLARQAGLACDRGVIVDHCGATLAKGVFAVGDVA 277
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 8/205 (3%)
Query: 76 NGRIVASPAINITENEV-LTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI- 133
N I S A+ + E+ + L+ G R+ + ++IATG K V + + + N+
Sbjct: 128 NVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAK-IVSNSAIKGSDLCLTSNEIFD 186
Query: 134 --KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS 191
K +SI+IVGGG GVE A K TL+H+G +L D +++
Sbjct: 187 LEKLPKSIVIVGGGYIGVEFAN--IFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVA 244
Query: 192 KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDT 251
K + + V+ +E + + G TI AD L TG+ + L ++
Sbjct: 245 KGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNE 304
Query: 252 HGMLMVDENLRVKGQKNIFAIGDIT 276
G ++VDE + +I+A+GD+T
Sbjct: 305 FGAVVVDEKMTTN-VSHIWAVGDVT 328
>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei
pdb|2WBA|B Chain B, Properties Of Trypanothione Reductase From T. Brucei
Length = 492
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 12/191 (6%)
Query: 94 TAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI---KSARSILIVGGGPTGVE 150
+A R+ D++++ATG +P + + N+ + R +L VGGG VE
Sbjct: 145 SAVKERLQADHILLATGSWPQMPAI--PGIEHCISSNEAFYLPEPPRRVLTVGGGFISVE 202
Query: 151 LAGEI-AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE---RVNLDS 206
AG A P KVTL ++ + +L ++ L + +++ E +V+L++
Sbjct: 203 FAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNT 262
Query: 207 VSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQ 266
+GS +G T++ D + G+ ++ L+ + L G + VDE R
Sbjct: 263 --DGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTN-V 319
Query: 267 KNIFAIGDITD 277
NI+AIGDITD
Sbjct: 320 PNIYAIGDITD 330
>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|B Chain B, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|C Chain C, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|D Chain D, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOV|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOW|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WP5|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP6|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WPC|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPE|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPF|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
Length = 495
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 12/191 (6%)
Query: 94 TAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI---KSARSILIVGGGPTGVE 150
+A R+ D++++ATG +P + + N+ + R +L VGGG VE
Sbjct: 148 SAVKERLQADHILLATGSWPQMPAI--PGIEHCISSNEAFYLPEPPRRVLTVGGGFISVE 205
Query: 151 LAGEI-AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE---RVNLDS 206
AG A P KVTL ++ + +L ++ L + +++ E +V+L++
Sbjct: 206 FAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNT 265
Query: 207 VSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQ 266
+GS +G T++ D + G+ ++ L+ + L G + VDE R
Sbjct: 266 --DGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTN-V 322
Query: 267 KNIFAIGDITD 277
NI+AIGDITD
Sbjct: 323 PNIYAIGDITD 333
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 28/200 (14%)
Query: 91 EVLTAEGRRVVYDYLVIATGHK---DPVPKTRTERLNQYQAEN------QKIKSARSILI 141
+++T E + YD L++ TG K P+P + R+ + N ++ A++I I
Sbjct: 95 DLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITI 154
Query: 142 VGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK-----VDV 196
+G G G ELA A V L+ R+L K DK +++K V++
Sbjct: 155 IGSGYIGAELAE--AYSNQNYNVNLIDGHERVLY----KYFDKEFTDILAKDYEAHGVNL 208
Query: 197 KLGERVNLDSVSEGSDTYLTST--GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGM 254
LG +V + E D +T T G I +D LC G ++ LK + ++ +G
Sbjct: 209 VLGSKVA--AFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKGKV---AMLDNGA 263
Query: 255 LMVDENLRVKGQKNIFAIGD 274
++ DE + ++IFA GD
Sbjct: 264 IITDEYMH-SSNRDIFAAGD 282
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 102/261 (39%), Gaps = 33/261 (12%)
Query: 30 KSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITE 89
+SLQ + + DP E+F I + A+VE HT + N R
Sbjct: 59 ESLQATPYNVVRDP-EFFRIN-KDVEALVETRAHAIDRAAHTVEIENLR----------- 105
Query: 90 NEVLTAEGRRVVYDYLVIATGHKDPVPK---------TRTERLNQYQAENQKIKSAR--S 138
T E R + YD LV+A G K P T L++ + I +
Sbjct: 106 ----TGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSK 161
Query: 139 ILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVK 197
+IVGGG G+E+A +A D T+V +++ F R L V V
Sbjct: 162 AVIVGGGFIGLEMAVSLA-DMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVH 220
Query: 198 LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMV 257
GE+V G + + T++AD L G + +D L+ LD G ++V
Sbjct: 221 TGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLE--LDPRGAIIV 278
Query: 258 DENLRVKGQKNIFAIGDITDI 278
D +R +IFA GD I
Sbjct: 279 DTRMRTS-DPDIFAGGDCVTI 298
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 26/213 (12%)
Query: 74 LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
+VN R A PA + E R+ +++++A+G +P + + N+
Sbjct: 134 VVNVRESADPASAVKE---------RLETEHILLASGSWPHMPNI--PGIEHCISSNEAF 182
Query: 134 ---KSARSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTRDWL 189
+ R +L VGGG VE AG P + +VTL ++G +L ++ L
Sbjct: 183 YLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQL 242
Query: 190 ISKKVDVKLGE---RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILK 246
+ + + E +V L++ +GS + +G ++ D + G+ S KD L+
Sbjct: 243 TANGIQILTKENPAKVELNA--DGSKSVTFESGKKMDFDLVMMAIGR---SPRTKDLQLQ 297
Query: 247 DS--LDTHGMLMVDENLRVKGQKNIFAIGDITD 277
++ + +G + VDE R NI+AIGD+T+
Sbjct: 298 NAGVMIKNGGVQVDEYSRTN-VSNIYAIGDVTN 329
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 26/213 (12%)
Query: 74 LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
+VN R A PA + E R+ +++++A+G +P + + N+
Sbjct: 133 VVNVRESADPASAVKE---------RLETEHILLASGSWPHMPNI--PGIEHCISSNEAF 181
Query: 134 ---KSARSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTRDWL 189
+ R +L VGGG VE AG P + +VTL ++G +L ++ L
Sbjct: 182 YLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQL 241
Query: 190 ISKKVDVKLGE---RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILK 246
+ + + E +V L++ +GS + +G ++ D + G+ S KD L+
Sbjct: 242 TANGIQILTKENPAKVELNA--DGSKSVTFESGKKMDFDLVMMAIGR---SPRTKDLQLQ 296
Query: 247 DS--LDTHGMLMVDENLRVKGQKNIFAIGDITD 277
++ + +G + VDE R NI+AIGD+T+
Sbjct: 297 NAGVMIKNGGVQVDEYSRTN-VSNIYAIGDVTN 328
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 26/213 (12%)
Query: 74 LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
+VN R A PA + E R+ +++++A+G +P + + N+
Sbjct: 135 VVNVRESADPASAVKE---------RLETEHILLASGSWPHMPNI--PGIEHCISSNEAF 183
Query: 134 ---KSARSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTRDWL 189
+ R +L VGGG VE AG P + +VTL ++G +L ++ L
Sbjct: 184 YLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQL 243
Query: 190 ISKKVDVKLGE---RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILK 246
+ + + E +V L++ +GS + +G ++ D + G+ S KD L+
Sbjct: 244 TANGIQILTKENPAKVELNA--DGSKSVTFESGKKMDFDLVMMAIGR---SPRTKDLQLQ 298
Query: 247 DS--LDTHGMLMVDENLRVKGQKNIFAIGDITD 277
++ + +G + VDE R NI+AIGD+T+
Sbjct: 299 NAGVMIKNGGVQVDEYSRTN-VSNIYAIGDVTN 330
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDV 196
+S++++GGG G+EL G +F K L G L F +K +I K++
Sbjct: 171 KSLVVIGGGYIGIEL-GTAYANFGTKVTILEGAGEILSGF------EKQMAAIIKKRLK- 222
Query: 197 KLGERVNLDSVSEGSD--------TYLTSTGD--TINADCHFLCTGKPVGSDWLKDTILK 246
K G V +++++G++ TY + G+ TI+AD + G+ +D L +
Sbjct: 223 KKGVEVVTNALAKGAEEREDGVTVTY-EANGETKTIDADYVLVTVGRRPNTDELGLEQIG 281
Query: 247 DSLDTHGMLMVDENLRVKGQKNIFAIGDI 275
+ G++ VD+ R NIFAIGDI
Sbjct: 282 IKMTNRGLIEVDQQCRTS-VPNIFAIGDI 309
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 12/147 (8%)
Query: 137 RSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD 195
R +L VGGG VE AG P + +VTL ++G +L ++ L + +
Sbjct: 189 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQ 248
Query: 196 VKLGE---RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDS--LD 250
+ E +V L++ +GS + +G ++ D + G+ S KD L+++ +
Sbjct: 249 ILTKENPAKVELNA--DGSKSVTFESGKKMDFDLVMMAIGR---SPRTKDLQLQNAGVMI 303
Query: 251 THGMLMVDENLRVKGQKNIFAIGDITD 277
+G + VDE R NI+AIGD+T+
Sbjct: 304 KNGGVQVDEYSRTN-VSNIYAIGDVTN 329
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 44/200 (22%)
Query: 15 RVVVIGG---GVAGSLVAKSLQFSADVTLIDPKE-----------YFEITWASL---RAM 57
++V+IG G++ ++ ++ A+++LID + YF T L R +
Sbjct: 4 KIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYI 63
Query: 58 VEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLT----AEGRRVVYDYLVIATGHKD 113
E ++ + L+N +VA EN+++ E + YD L++ATG
Sbjct: 64 TEEELRRQKI----QLLLNREVVAXD----VENQLIAWTRKEEQQWYSYDKLILATGASQ 115
Query: 114 PVPKTR---TERLNQYQ------AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKV 164
+ R TE+L +Y+ A +++++++ ++G GP G E A+DF K
Sbjct: 116 FSTQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGXE-----AIDFLVKXK 170
Query: 165 TLVHKGSRLLEFIGPKAGDK 184
VH LE + PK DK
Sbjct: 171 KTVHVFES-LENLLPKYFDK 189
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 98/217 (45%), Gaps = 33/217 (15%)
Query: 13 NKRVVVIGGGVAGSLVAKSLQFSA---------DVTLIDPKEYFEITWASL--RAMVEPS 61
N VV++G G+AG VA L+ S D T+I P ++ A L +A E
Sbjct: 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVI-PHHLPPLSKAYLAGKATAESL 61
Query: 62 FGKR--SVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKD---PVP 116
+ + + L+ G V AIN +V+ ++GR + YD LV+ATG + PV
Sbjct: 62 YLRTPDAYAAQNIQLLGGTQVT--AINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVA 119
Query: 117 KTRTERLNQYQ-------AE--NQKIKSARSILIVGGGPTGVELAG-EIAVDFPEKKVTL 166
+ N ++ AE +++ + ++++GGG G+E+A I + VTL
Sbjct: 120 SGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANM---HVTL 176
Query: 167 VHKGSRLLEFI-GPKAGDKTRDWLISKKVDVKLGERV 202
+ +R+LE + P VD++ G +V
Sbjct: 177 LDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQV 213
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 31/216 (14%)
Query: 13 NKRVVVIGGGVAGSLVAKSLQFSA---------DVTLIDPKEYFEITWASL--RAMVEPS 61
N VV++G G+AG VA L+ S D T+I P ++ A L +A E
Sbjct: 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVI-PHHLPPLSKAYLAGKATAESL 62
Query: 62 FGKR--SVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKD---PVP 116
+ + + L+ G V AIN +V+ ++GR + YD LV+ATG + PV
Sbjct: 63 YLRTPDAYAAQNIQLLGGTQVT--AINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVA 120
Query: 117 KTRTERLNQYQ-------AE--NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLV 167
+ N ++ AE +++ + ++++GGG G+E+A A+ VTL+
Sbjct: 121 SGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAA-TAIK-ANMHVTLL 178
Query: 168 HKGSRLLEFI-GPKAGDKTRDWLISKKVDVKLGERV 202
+R+LE + P VD++ G +V
Sbjct: 179 DTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQV 214
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 126/307 (41%), Gaps = 55/307 (17%)
Query: 16 VVVIGGGVAGSLVA-KSLQFSADVTLIDPKEYF-----------EITW--ASLRAMVE-- 59
++ IGGG G VA K+ F V LI+ K ++ W + L V
Sbjct: 7 LIAIGGGSGGLAVAEKAAAFGKRVALIESKALGGTCVNVGCVPKKVMWYASHLAEAVRDA 66
Query: 60 PSFGKRSVINHTDY--LVNGRIVASPAIN--------------------ITENEVLTAEG 97
P FG ++ D+ LV GR AIN + + EG
Sbjct: 67 PGFGVQASGGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEVEG 126
Query: 98 RRVVYDYLVIATGHKDPVPKTRTERL----NQYQAENQKIKSARSILIVGGGPTGVELAG 153
+R+ D++VIATG + VP+ L + + A Q+ K + I+G G G+ELAG
Sbjct: 127 QRLSADHIVIATGGRPIVPRLPGAELGITSDGFFALQQQPK---RVAIIGAGYIGIELAG 183
Query: 154 EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV-NLDSVSEGSD 212
+ E VT+V RLL P + + ++ ++ L V L+ ++G+
Sbjct: 184 LLRSFGSE--VTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGT- 240
Query: 213 TYLTSTGDTINA-DCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVD--ENLRVKGQKNI 269
T + G + D G+ + L + ++GM+ D +N V G +
Sbjct: 241 TLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPG---V 297
Query: 270 FAIGDIT 276
+A+GDIT
Sbjct: 298 YALGDIT 304
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 27/204 (13%)
Query: 87 ITENEVLTAE-GRRVVYDYLVIATGHKDPVP---KTRTERLNQYQAENQKIKSARSILIV 142
++E +VL E G + Y++IATG +P + ER+ + + +++V
Sbjct: 114 LSERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVVTSTEALSFPEVPKRLIVV 173
Query: 143 GGGPTGVEL--------AGEIAVDFPEKKV-TLVHKGSRLLEFIGPKAGDKTRDWL-ISK 192
GGG G+EL A I +++ ++ + T+ + SR E + K G R + ++
Sbjct: 174 GGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTA 233
Query: 193 KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTH 252
V G RV L+ G+ + AD + G+ ++ L S D
Sbjct: 234 VVPEAKGARVELEG------------GEVLEADRVLVAVGRRPYTEGLSLENAGLSTDER 281
Query: 253 GMLMVDENLRVKGQKNIFAIGDIT 276
G + VDE+LR + +I+AIGD+
Sbjct: 282 GRIPVDEHLRTR-VPHIYAIGDVV 304
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 123/278 (44%), Gaps = 31/278 (11%)
Query: 15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL 74
+VV++G G G +AK L + +VT+ID + + L + + + ++
Sbjct: 10 KVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDW 69
Query: 75 VNGRIVASPAINITENEVLTAEGRRVV--------YDYLVIATGHKDPVPKTRTERL--- 123
R + I + E L GR+VV YD LV+ATG + P+ + +
Sbjct: 70 YRKRGIE---IRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGARAREPQIKGKEYLLT 126
Query: 124 --NQYQAE--NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGP 179
+ A+ + I+++ +I+GGG G+ELAG +A V L+H+G+ L +
Sbjct: 127 LRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAE--AGYHVKLIHRGAMFLG-LDE 183
Query: 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDW 239
+ + +D L V L + L++ EG LT++G I G D
Sbjct: 184 ELSNMIKDMLEETGVKFFLNSEL-LEANEEGV---LTNSG-FIEGKVKICAIGIVPNVDL 238
Query: 240 LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 277
+ + + T +++D+N R K+++AIGD +
Sbjct: 239 AR----RSGIHTGRGILIDDNFRTSA-KDVYAIGDCAE 271
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 80/209 (38%), Gaps = 27/209 (12%)
Query: 87 ITENEVLTAEGRRVVYDYLVIATGHKDPVPKT----------------RTERLNQYQAEN 130
IT V T E YD L+++ G K VP T+R+ Y E
Sbjct: 126 ITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDE- 184
Query: 131 QKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLI 190
K R ++GGG GVE + E VTLV +++ I + +
Sbjct: 185 ---KKPRHATVIGGGFIGVEXVENLRERGIE--VTLVEXANQVXPPIDYEXAAYVHEH-- 237
Query: 191 SKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLD 250
K DV+L +D++ E +G I D L G S K L +L
Sbjct: 238 XKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDXLILAIGVQPESSLAKGAGL--ALG 295
Query: 251 THGMLMVDENLRVKGQKNIFAIGDITDIR 279
G + V+E + +I+AIGD +++
Sbjct: 296 VRGTIKVNEKFQTS-DPHIYAIGDAIEVK 323
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 78/162 (48%), Gaps = 24/162 (14%)
Query: 13 NKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----PKEYFEITWASLRAMVEPSF-- 62
N V++ G G AG VA SL ++ + LI+ P + ++ A L++ +P+
Sbjct: 1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLM 60
Query: 63 --GKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKD------- 113
++ + L++ R+V+ I+ ++L A G + Y +LV+ATG ++
Sbjct: 61 FRPEKFFQDQAIELISDRMVS---IDREGRKLLLASGTAIEYGHLVLATGARNRMLDVPN 117
Query: 114 -PVPKTRTER-LNQYQAENQKIKSARSILIVGGGPTGVELAG 153
+P R L++ + Q++ + ++++G G G+E A
Sbjct: 118 ASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAA 159
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 90/228 (39%), Gaps = 37/228 (16%)
Query: 80 VASPAINITENEVLTAEGRRVVYDYLVIATGHKD-----------PVPKTRT-ERLNQYQ 127
V + + + + V ++GR + Y LV+ATG PV RT E + Q
Sbjct: 80 VTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQ 139
Query: 128 AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKA-GDKTR 186
A ++ +LIVGGG G+ELA V+LV RL+ P D
Sbjct: 140 A---GLRPQSRLLIVGGGVIGLELAATART--AGVHVSLVETQPRLMSRAAPATLADFVA 194
Query: 187 DWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILK 246
+ ++ VD++ ER SV L G I AD + G +
Sbjct: 195 RYHAAQGVDLRF-ERSVTGSV---DGVVLLDDGTRIAADMVVVGIG----------VLAN 240
Query: 247 DSLDTHGMLMVDENLRVKGQ-----KNIFAIGDITDIRVSASMIFPQV 289
D+L L D+ + V +++A+GD+T R S F ++
Sbjct: 241 DALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERI 288
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 90/228 (39%), Gaps = 37/228 (16%)
Query: 80 VASPAINITENEVLTAEGRRVVYDYLVIATGHKD-----------PVPKTRT-ERLNQYQ 127
V + + + + V ++GR + Y LV+ATG PV RT E + Q
Sbjct: 80 VTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQ 139
Query: 128 AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKA-GDKTR 186
A ++ +LIVGGG G+ELA V+LV RL+ P D
Sbjct: 140 A---GLRPQSRLLIVGGGVIGLELAAT--ARTAGVHVSLVETQPRLMSRAAPATLADFVA 194
Query: 187 DWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILK 246
+ ++ VD++ ER SV L G I AD + G +
Sbjct: 195 RYHAAQGVDLRF-ERSVTGSV---DGVVLLDDGTRIAADMVVVGIG----------VLAN 240
Query: 247 DSLDTHGMLMVDENLRVKGQ-----KNIFAIGDITDIRVSASMIFPQV 289
D+L L D+ + V +++A+GD+T R S F ++
Sbjct: 241 DALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERI 288
>pdb|2E4G|A Chain A, Rebh With Bound L-Trp
pdb|2E4G|B Chain B, Rebh With Bound L-Trp
pdb|2OAL|A Chain A, Rebh With Bound Fad
pdb|2OAL|B Chain B, Rebh With Bound Fad
pdb|2OAM|A Chain A, Apo Rebh From Lechevalieria Aerocolonigenes
pdb|2OAM|B Chain B, Apo Rebh From Lechevalieria Aerocolonigenes
pdb|2O9Z|A Chain A, Crystal Structure Of Rebh, A Fad-Dependent Halogenase
From Lechevalieria Aerocolonigenes, The Apo Form
pdb|2O9Z|B Chain B, Crystal Structure Of Rebh, A Fad-Dependent Halogenase
From Lechevalieria Aerocolonigenes, The Apo Form
pdb|2OA1|B Chain B, Crystal Structure Of Rebh, A Fad-Dependent Halogenase
From Lechevalieria Aerocolonigenes, The L-Tryptophan
With Fad Complex
pdb|2OA1|A Chain A, Crystal Structure Of Rebh, A Fad-Dependent Halogenase
From Lechevalieria Aerocolonigenes, The L-Tryptophan
With Fad Complex
Length = 550
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 5 RQQQSEGKNKRVVVIGGGVAGSLVA----KSLQFSADVTLI 41
R GK +++++GGG AG + A K+LQ +AD+TL+
Sbjct: 17 RGSHMSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLL 57
>pdb|3T2Z|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T2Z|B Chain B, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T31|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With
Decylubiquinone
pdb|3SZ0|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Sodium
Selenide
pdb|3SZC|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Gold (I)
Cyanide
pdb|3T0K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans With Bound Trisulfide And
Decylubiquinone
Length = 437
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 22/115 (19%)
Query: 13 NKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFE---------ITWASLRAMVE 59
+ VV++G G G A ++L +VTLI +YF+ + W +
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAF 63
Query: 60 PSFGKRSVINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
P I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 64 P-------IRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 111
>pdb|3SZW|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ser Variant From Acidithiobacillus Ferrooxidans In
Complex With Decylubiquinone
Length = 437
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 22/115 (19%)
Query: 13 NKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFE---------ITWASLRAMVE 59
+ VV++G G G A ++L +VTLI +YF+ + W +
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAF 63
Query: 60 PSFGKRSVINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
P I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 64 P-------IRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 111
>pdb|3SZF|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase H198a
Variant From Acidithiobacillus Ferrooxidans In Complex
With Bound Trisulfide And Decylubiquinone
Length = 437
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 22/115 (19%)
Query: 13 NKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFE---------ITWASLRAMVE 59
+ VV++G G G A ++L +VTLI +YF+ + W +
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAF 63
Query: 60 PSFGKRSVINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
P I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 64 P-------IRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 111
>pdb|3SY4|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
pdb|3SYI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
Using 7.0 Kev Diffraction Data
Length = 437
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 22/115 (19%)
Query: 13 NKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFE---------ITWASLRAMVE 59
+ VV++G G G A ++L +VTLI +YF+ + W +
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAF 63
Query: 60 PSFGKRSVINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
P I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 64 P-------IRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 111
>pdb|3SXI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
pdb|3T14|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
pdb|3T2K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Trisulfane
Length = 437
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 22/115 (19%)
Query: 13 NKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFE---------ITWASLRAMVE 59
+ VV++G G G A ++L +VTLI +YF+ + W +
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAF 63
Query: 60 PSFGKRSVINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
P I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 64 P-------IRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 111
>pdb|3SX6|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys356ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
Length = 437
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 22/115 (19%)
Query: 13 NKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFE---------ITWASLRAMVE 59
+ VV++G G G A ++L +VTLI +YF+ + W +
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAF 63
Query: 60 PSFGKRSVINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
P I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 64 P-------IRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 111
>pdb|3T2Y|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
His132ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
Length = 434
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 22/113 (19%)
Query: 15 RVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFE---------ITWASLRAMVEPS 61
VV++G G G A ++L +VTLI +YF+ + W + P
Sbjct: 3 HVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFP- 61
Query: 62 FGKRSVINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 62 ------IRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 108
>pdb|3KPK|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans, C160a Mutant
Length = 434
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 22/113 (19%)
Query: 15 RVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFE---------ITWASLRAMVEPS 61
VV++G G G A ++L +VTLI +YF+ + W + P
Sbjct: 3 HVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFP- 61
Query: 62 FGKRSVINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 62 ------IRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 108
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 128 AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF 176
A + + S +LIVG GP G+ LA ++A FP+ + +V + +E
Sbjct: 24 AHTEAVPSQVDVLIVGCGPAGLTLAAQLAA-FPDIRTCIVEQKEGPMEL 71
>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione
Reductase
Length = 500
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 19/195 (9%)
Query: 96 EGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAG-- 153
EGR ++ IA G+K P + E IK ++ I IVG G VEL
Sbjct: 141 EGRNIL-----IAVGNKPVFPPVKGIENTISSDEFFNIKESKKIGIVGSGYIAVELINVI 195
Query: 154 -EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD-VKLGERVNLDSVSEGS 211
+ +D + +G+R+L + + + ++ V + V + VS+ +
Sbjct: 196 KRLGID-----SYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKN 250
Query: 212 DTYLTSTGDTINADCHFL-CTGKPVGSDWLKDTILKDSLDT-HGMLMVDENLRVKGQKNI 269
+ S G H + C G+ ++ LK + K +++T + ++VDEN R NI
Sbjct: 251 LSIHLSDGRIYEHFDHVIYCVGRSPDTENLK--LEKLNVETNNNYIVVDENQRT-SVNNI 307
Query: 270 FAIGDITDIRVSASM 284
+A+GD ++ S +
Sbjct: 308 YAVGDCCMVKKSKEI 322
>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYX|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
Length = 430
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 84 AINITENEVLTAEGRRVVYDYLVIATGHK 112
+I+ N V T G+++ YDYLVIATG K
Sbjct: 80 SIDPDANTVTTQSGKKIEYDYLVIATGPK 108
>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
Length = 430
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 84 AINITENEVLTAEGRRVVYDYLVIATGHK 112
+I+ N V T G+++ YDYLVIATG K
Sbjct: 80 SIDPDANTVTTQSGKKIEYDYLVIATGPK 108
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 127/281 (45%), Gaps = 35/281 (12%)
Query: 12 KNKRVVVIGGGVAGSLVAK-SLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSV-IN 69
K+ +++++G G AG AK +L D+T+I+ ++Y L ++ + + I
Sbjct: 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIK 67
Query: 70 HTDYLV--NGRIVASP-AINITENEVLTA--EGRRVVYDYLVIATG---HKDPVPKTRTE 121
D+ N +++ S A +I N L G ++ Y+ L+IA+G +K VP E
Sbjct: 68 KNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHA-DE 126
Query: 122 RLNQYQAEN-----QKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF 176
+ Y ++ + K+ I+GGG G+ELA I + ++ LE+
Sbjct: 127 IFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGII------LEY 180
Query: 177 IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 236
+ D+ + K+D +LG ++ +S E GD I + C G
Sbjct: 181 PLERQLDRDGGLFLKDKLD-RLGIKIYTNSNFE-------EMGDLIRSSCVITAVGVKPN 232
Query: 237 SDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 277
D++KDT + + ++V++++ K+I+A GD+ +
Sbjct: 233 LDFIKDT----EIASKRGILVNDHMET-SIKDIYACGDVAE 268
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 90/204 (44%), Gaps = 29/204 (14%)
Query: 90 NEVLTAEGRRVVYDYLVIATGHK---DPVP---KTRTERLNQYQAENQKIKSARSILIVG 143
+++ TA G + +++ATG K VP + RT+ + + + + + ++G
Sbjct: 92 HQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIG 151
Query: 144 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKT-RDWLIS-KKVDVKLGER 201
GG +GVE A ++A + + LLEF D+ +D L S K VD+ L +
Sbjct: 152 GGNSGVEAAIDLAG---------IVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQ 202
Query: 202 VNLDSVSEGSDTYLTSTGDTINADCH-------FLCTGKPVGSDWLKDTILKDSLDTHGM 254
+ +GS D ++ D H F+ G ++WL+ + ++ + G
Sbjct: 203 TT-EVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRM---GE 258
Query: 255 LMVDENLRVKGQKNIFAIGDITDI 278
+++D K +FA GD T +
Sbjct: 259 IIIDAKCETN-VKGVFAAGDCTTV 281
>pdb|3LOV|A Chain A, Crystal Structure Of Putative Protoporphyrinogen Oxidase
(Yp_001813199.1) From Exiguobacterium Sp. 255-15 At 2.06
A Resolution
Length = 475
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 173
S++ ++IVGGG TG+ A FP+ +TL+ G RL
Sbjct: 3 SSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL 41
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 140
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 140
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 155 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 189
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 140
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 107 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 141
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 140
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 155 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 189
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 311
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 3/146 (2%)
Query: 134 KSARSILIVGGGPTGVELAGEI-AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK 192
++ + L VGGG +E AG A +V L ++G +L + + + L +
Sbjct: 185 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRAN 244
Query: 193 KVDVKLGER-VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDT 251
++V+ E + ++G+ + +G + D L G+ S L+ +
Sbjct: 245 GINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAK 304
Query: 252 HGMLMVDENLRVKGQKNIFAIGDITD 277
+G + VD + NI+AIGD+TD
Sbjct: 305 NGAIKVDAYSKTN-VDNIYAIGDVTD 329
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 3/146 (2%)
Query: 134 KSARSILIVGGGPTGVELAGEI-AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK 192
++ + L VGGG +E AG A +V L ++G +L + + + L +
Sbjct: 185 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRAN 244
Query: 193 KVDVKLGER-VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDT 251
++V+ E + ++G+ + +G + D L G+ S L+ +
Sbjct: 245 GINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAK 304
Query: 252 HGMLMVDENLRVKGQKNIFAIGDITD 277
+G + VD + NI+AIGD+TD
Sbjct: 305 NGAIKVDAYSKTN-VDNIYAIGDVTD 329
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 3/146 (2%)
Query: 134 KSARSILIVGGGPTGVELAGEI-AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK 192
++ + L VGGG +E AG A +V L ++G +L + + + L +
Sbjct: 186 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRAN 245
Query: 193 KVDVKLGER-VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDT 251
++V+ E + ++G+ + +G + D L G+ S L+ +
Sbjct: 246 GINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAK 305
Query: 252 HGMLMVDENLRVKGQKNIFAIGDITD 277
+G + VD + NI+AIGD+TD
Sbjct: 306 NGAIKVDAYSKTN-VDNIYAIGDVTD 330
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 3/146 (2%)
Query: 134 KSARSILIVGGGPTGVELAGEI-AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK 192
++ + L VGGG +E AG A +V L ++G +L + + + L +
Sbjct: 186 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRAN 245
Query: 193 KVDVKLGER-VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDT 251
++V+ E + ++G+ + +G + D L G+ S L+ +
Sbjct: 246 GINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAK 305
Query: 252 HGMLMVDENLRVKGQKNIFAIGDITD 277
+G + VD + NI+AIGD+TD
Sbjct: 306 NGAIKVDAYSKTN-VDNIYAIGDVTD 330
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 29/204 (14%)
Query: 90 NEVLTAEGRRVVYDYLVIATGHK---DPVP---KTRTERLNQYQAENQKIKSARSILIVG 143
+++ TA G + ++IATG K VP + RT+ + + + + + ++G
Sbjct: 303 HQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIG 362
Query: 144 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKT-RDWLIS-KKVDVKLGER 201
GG +GVE A ++A + + LLEF D+ +D + S K VD+ L +
Sbjct: 363 GGNSGVEAAIDLAG---------IVEHVTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQ 413
Query: 202 VNLDSVSEGSDTYLTSTGDTINADCH-------FLCTGKPVGSDWLKDTILKDSLDTHGM 254
+ +GS D ++ D H F+ G + WL+ + ++ + G
Sbjct: 414 TT-EVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRM---GE 469
Query: 255 LMVDENLRVKGQKNIFAIGDITDI 278
+++D K +FA GD T +
Sbjct: 470 IIIDAKCETS-VKGVFAAGDCTTV 492
>pdb|1KYQ|A Chain A, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis.
pdb|1KYQ|B Chain B, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis.
pdb|1KYQ|C Chain C, Met8p: A Bifunctional Nad-Dependent Dehydrogenase And
Ferrochelatase Involved In Siroheme Synthesis
Length = 274
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 6 QQQSEGKNKRVVVIGGGVAG-SLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGK 64
Q + K+KR+++IGGG G + + K +TL+ P L + P FGK
Sbjct: 6 QLAHQLKDKRILLIGGGEVGLTRLYKLXPTGCKLTLVSP---------DLHKSIIPKFGK 56
Query: 65 R-SVINHTDYLVNGRIVASPAINITENEV 92
+ DY + + +P + T+NE+
Sbjct: 57 FIQNKDQPDYREDAKRFINPNWDPTKNEI 85
>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
Biosynthetic Enzyme Rebc
pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0P|A Chain A, K252c-Soaked Rebc
pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
Length = 549
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 13/64 (20%)
Query: 139 ILIVGGGPTGVELA--------GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLI 190
+LI+GGGP G+ LA G + V+ + +T G+ IGP++ + R W +
Sbjct: 29 VLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGT-----IGPRSMELFRRWGV 83
Query: 191 SKKV 194
+K++
Sbjct: 84 AKQI 87
>pdb|3BBN|D Chain D, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 201
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 63 GKRSVINHTDYLVNGRIVASPAINITENEVLTAE 96
G R ++NH LVNGRIV P+ + + A
Sbjct: 106 GARQLVNHRHILVNGRIVDIPSYRCKPQDTIMAR 139
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 119/295 (40%), Gaps = 53/295 (17%)
Query: 17 VVIGGGVAGSLVAKSL---QFSADVTLIDPKEYFEITWASLRAMVEPSFGK------RSV 67
V+IGG AG A + +A+V ++ E + L ++ + R+V
Sbjct: 40 VIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNV 99
Query: 68 INHTD-YLVNGRIVASPAINITENEVLTAEGRRV------VYDYLVIATGHKDPVPKTRT 120
D Y ++ ++ TE +++ AE + YD L+IATG + +P+
Sbjct: 100 KTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEG 159
Query: 121 ERLNQYQAENQKIKSARSIL------------IVGGGPTGVELAGEIAVDFPEKKVTLVH 168
L + I A IL I+GGG G+E+A E V+ KKV ++
Sbjct: 160 RDLQGVHLL-KTIPDAERILKTLETNKVEDVTIIGGGAIGLEMA-ETFVELG-KKVRMIE 216
Query: 169 KGSR--------LLEFIGPKAGDKTRDWLISKKVDV-KLGERVNLDSVSEGSDTYLTSTG 219
+ + E+I +A + L ++ V K ERV +G
Sbjct: 217 RNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKG--------- 267
Query: 220 DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD 274
T AD + G +D+L+ T ++ + G + V+ ++ Q +++A GD
Sbjct: 268 -TYKADLVLVSVGVKPNTDFLEGTNIR--TNHKGAIEVNAYMQTNVQ-DVYAAGD 318
>pdb|2APG|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna)suggests
A Mechanism For Regioselective Chlorination
pdb|2AQJ|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna) Suggests
A Mechanism For Regioselective Chlorination
pdb|2AR8|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna)suggests
A Mechanism For Regioselective Chlorination
pdb|2ARD|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna) Suggests
A Mechanism For Regioselective Chlorination
Length = 538
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Query: 14 KRVVVIGGGVAGSLVA----KSLQFSADVTLID 42
K +V++GGG AG + A ++LQ A++TLI+
Sbjct: 6 KNIVIVGGGTAGWMAASYLVRALQQQANITLIE 38
>pdb|2JKC|A Chain A, Crystal Structure Of E346d Of Tryptophan 7-Halogenase
(Prna)
Length = 538
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Query: 14 KRVVVIGGGVAGSLVA----KSLQFSADVTLID 42
K +V++GGG AG + A ++LQ A++TLI+
Sbjct: 6 KNIVIVGGGTAGWMAASYLVRALQQQANITLIE 38
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 12 KNKRVVVIGGGVAGSLVAKSL-QFSADVTLID--PKEYFEITW 51
K KRVV IGGG +G++ A S+ ++ +VT+I+ PK E +
Sbjct: 154 KGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAY 196
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 5 RQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSAD--VTLI-------DPKEYFEITWASLR 55
R + N +V++GGG AGSL+A L D V LI DP + W +L+
Sbjct: 9 RAKVEHAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQ 68
>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
Length = 549
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
Query: 139 ILIVGGGPTGVELA--------GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLI 190
+LI+GGGP G+ LA G + VD + +T + IGP++ + R W +
Sbjct: 29 VLILGGGPVGMALALDLAHRQVGHLVVDAGDGTIT-----HPKVSTIGPRSMELFRRWGV 83
Query: 191 SKKV 194
+K++
Sbjct: 84 AKQI 87
>pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (e.c.2.7.7.7) Mutant/dna
Complex
pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
Complex
pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
Complex
pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And
Manganese
pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc
Only
pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And
Manganese
pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only
pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate
And Europium (Iii) Ion
pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Short Dna Fragment Carrying 2'-0-
Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3'
pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Dna Tetramer Carrying
2'-O-(3-Aminopropyl)- Rna Modification
5'-D(Tt)-Ap(U)-D(T)-3'
Length = 605
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 118 TRTERLNQYQAENQKIKSARSILIVGGGP-TGVELAGEIAVDFPEKKVTLVHKG------ 170
+ T++L E Q IK + GG P T E+ E+A+D+P KV L ++G
Sbjct: 258 SSTKQLQTILFEKQGIKPLKKT--PGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKS 315
Query: 171 ---SRLLEFIGPKAG 182
+L I PK G
Sbjct: 316 TYTDKLPLMINPKTG 330
>pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna
Polymerase I Complexed With DTMP
pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna
Polymerase I Complexed With Deoxynucleoside Triphosphate
And Pyrophosphate
Length = 605
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 118 TRTERLNQYQAENQKIKSARSILIVGGGP-TGVELAGEIAVDFPEKKVTLVHKG------ 170
+ T++L E Q IK + GG P T E+ E+A+D+P KV L ++G
Sbjct: 258 SSTKQLQTILFEKQGIKPLKKT--PGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKS 315
Query: 171 ---SRLLEFIGPKAG 182
+L I PK G
Sbjct: 316 TYTDKLPLMINPKTG 330
>pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Dna
Length = 605
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 118 TRTERLNQYQAENQKIKSARSILIVGGGP-TGVELAGEIAVDFPEKKVTLVHKG------ 170
+ T++L E Q IK + GG P T E+ E+A+D+P KV L ++G
Sbjct: 258 SSTKQLQTILFEKQGIKPLKKT--PGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKS 315
Query: 171 ---SRLLEFIGPKAG 182
+L I PK G
Sbjct: 316 TYTDKLPLMINPKTG 330
>pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
Complex
Length = 605
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 118 TRTERLNQYQAENQKIKSARSILIVGGGP-TGVELAGEIAVDFPEKKVTLVHKG------ 170
+ T++L E Q IK + GG P T E+ E+A+D+P KV L ++G
Sbjct: 258 SSTKQLQTILFEKQGIKPLKKT--PGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKS 315
Query: 171 ---SRLLEFIGPKAG 182
+L I PK G
Sbjct: 316 TYTDKLPLMINPKTG 330
>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
Length = 493
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 24/102 (23%)
Query: 85 INITENEVLTAEGRRVVYDYLVIATG----------HKDPVPKTRT---ERLNQYQAENQ 131
+++ +N V +G ++ Y+ +IATG K+RT ++ +++ +
Sbjct: 116 LDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEK 175
Query: 132 KIKSARSILIVGGGPTGVELAG-----------EIAVDFPEK 162
+ +SI I+GGG G ELA E+ FPEK
Sbjct: 176 ISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK 217
>pdb|1YTL|A Chain A, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
pdb|1YTL|B Chain B, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
pdb|1YTL|C Chain C, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
pdb|1YTL|D Chain D, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
Length = 174
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 114 PVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 173
P PK T N K+ R +LIVG P + E F EK +T+V GS +
Sbjct: 14 PGPKMATLLEKGKPVANMIKKAKRPLLIVG--PDMTDEMFERVKKFVEKDITVVATGSAI 71
Query: 174 LEFIGPKAGDKT 185
FI G+K
Sbjct: 72 TRFIDAGLGEKV 83
>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
pdb|4DNA|B Chain B, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
Length = 463
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 76/193 (39%), Gaps = 16/193 (8%)
Query: 93 LTAEGRRVVYDYLVIATG-HKDPVPKTRTERLNQYQAENQKIKS-ARSILIVGGGPTGVE 150
L A G+ V + +VIA G H P L E + + SILI GGG VE
Sbjct: 125 LLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPESILIAGGGYIAVE 184
Query: 151 LAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV 207
A + V K TL+++G +L K + + L E + + SV
Sbjct: 185 FANIFHGLGV-----KTTLIYRGKEILSRFDQDXRRGLHAAXEEKGIRI-LCEDI-IQSV 237
Query: 208 SEGSD---TYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVK 264
S +D T I AD L G+ ++ L + G ++VD R
Sbjct: 238 SADADGRRVATTXKHGEIVADQVXLALGRXPNTNGLGLEAAGVRTNELGAIIVDAFSRTS 297
Query: 265 GQKNIFAIGDITD 277
I+A+GD+TD
Sbjct: 298 -TPGIYALGDVTD 309
>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis
Inducing Factor (Aif)
Length = 514
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 24/102 (23%)
Query: 85 INITENEVLTAEGRRVVYDYLVIATG----------HKDPVPKTRT---ERLNQYQAENQ 131
+++ +N V +G ++ Y+ +IATG K+RT ++ +++ +
Sbjct: 134 LDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEK 193
Query: 132 KIKSARSILIVGGGPTGVELAG-----------EIAVDFPEK 162
+ +SI I+GGG G ELA E+ FPEK
Sbjct: 194 ISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK 235
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 9 SEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLI-------DPKEYFEITWAS 53
++G + V++GGG AG+ VA L + +VT++ +P++ EIT S
Sbjct: 2 TDGSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPS 53
>pdb|2J47|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex
With A Imidazole-Pugnac Hybrid Inhibitor
pdb|2W4X|A Chain A, Btgh84 In Complex With Stz
pdb|2W66|A Chain A, Btgh84 In Complex With Hq602
pdb|2W66|B Chain B, Btgh84 In Complex With Hq602
pdb|2W67|A Chain A, Btgh84 In Complex With Fma34
pdb|2W67|B Chain B, Btgh84 In Complex With Fma34
pdb|2WCA|A Chain A, Btgh84 In Complex With N-Butyl Pugnac
pdb|2XJ7|A Chain A, Btgh84 In Complex With 6-Acetamido-6-Deoxy-Castanospermine
pdb|2XJ7|B Chain B, Btgh84 In Complex With 6-Acetamido-6-Deoxy-Castanospermine
pdb|2XM1|A Chain A, Btgh84 In Complex With N-Acetyl Gluconolactam
pdb|2XM1|B Chain B, Btgh84 In Complex With N-Acetyl Gluconolactam
pdb|2XM2|A Chain A, Btgh84 In Complex With Lognac
pdb|2XM2|B Chain B, Btgh84 In Complex With Lognac
Length = 716
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 206 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 244
S S + YLT+ GD +N + TG V SD +D I
Sbjct: 285 SWSNPNGNYLTTLGDKLNPSIQIMWTGDRVISDITRDGI 323
>pdb|2CHO|A Chain A, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity
pdb|2CHO|B Chain B, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity
Length = 716
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 206 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 244
S S + YLT+ GD +N + TG V SD +D I
Sbjct: 285 SWSNPNGNYLTTLGDKLNPSIQIMWTGDRVISDITRDGI 323
>pdb|2J4G|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex
With N-Butyl-Thiazoline Inhibitor
pdb|2J4G|B Chain B, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex
With N-Butyl-Thiazoline Inhibitor
Length = 715
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 206 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 244
S S + YLT+ GD +N + TG V SD +D I
Sbjct: 284 SWSNPNGNYLTTLGDKLNPSIQIMWTGDRVISDITRDGI 322
>pdb|2JIW|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-glcnacase In Complex
With 2-acetylamino-2-deoxy-1-epivalienamine
pdb|2JIW|B Chain B, Bacteroides Thetaiotaomicron Gh84 O-glcnacase In Complex
With 2-acetylamino-2-deoxy-1-epivalienamine
Length = 716
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 206 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 244
S S + YLT+ GD +N + TG V SD +D I
Sbjct: 285 SWSNPNGNYLTTLGDKLNPSIQIMWTGDRVISDITRDGI 323
>pdb|2WZI|A Chain A, Btgh84 D243n In Complex With 5f-Oxazoline
pdb|2WZI|B Chain B, Btgh84 D243n In Complex With 5f-Oxazoline
Length = 737
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 206 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 244
S S + YLT+ GD +N + TG V SD +D I
Sbjct: 306 SWSNPNGNYLTTLGDKLNPSIQIMWTGDRVISDITRDGI 344
>pdb|2WZH|A Chain A, Btgh84 D242n In Complex With Meumb-Derived Oxazoline
pdb|4AIU|A Chain A, A Complex Structure Of Btgh84
Length = 737
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 206 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 244
S S + YLT+ GD +N + TG V SD +D I
Sbjct: 306 SWSNPNGNYLTTLGDKLNPSIQIMWTGDRVISDITRDGI 344
>pdb|2VVN|A Chain A, Btgh84 In Complex With Nh-Butylthiazoline
pdb|2VVN|B Chain B, Btgh84 In Complex With Nh-Butylthiazoline
pdb|2VVS|A Chain A, Btgh84 Structure In Complex With Pugnac
pdb|2X0H|A Chain A, Btgh84 Michaelis Complex
pdb|2X0H|B Chain B, Btgh84 Michaelis Complex
pdb|4AIS|A Chain A, A Complex Structure Of Btgh84
pdb|4AIS|B Chain B, A Complex Structure Of Btgh84
Length = 737
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 206 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 244
S S + YLT+ GD +N + TG V SD +D I
Sbjct: 306 SWSNPNGNYLTTLGDKLNPSIQIMWTGDRVISDITRDGI 344
>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ6|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ8|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ9|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|G Chain G, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|H Chain H, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|J Chain J, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|K Chain K, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 464
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 3 SRRQQQSEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLID 42
+R + EG KR++VIGGG G + + + A+VTLI+
Sbjct: 159 TRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIE 199
>pdb|2Z10|A Chain A, Crystal Structure Of Putative Acetyltransferase
pdb|2Z11|A Chain A, Crystal Structure Of Putative Acetyltransferase
Length = 194
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 148 GVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNL-- 204
G E+AG I+V PE + + G+ L + F G A + + L+ +V ERV
Sbjct: 71 GKEVAGRISVIAPEPEHAKLELGTMLFKPFWGSPANKEAKXLLLRHAFEVLRAERVQFKV 130
Query: 205 DSVSEGSDTYLTSTG 219
D +E S L + G
Sbjct: 131 DLRNERSQRALEALG 145
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 134 KSARSILIVGGGPTGVELAGEI 155
+S S+++VG GP G+ LAGE+
Sbjct: 10 RSDASVIVVGAGPAGLMLAGEL 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,373,852
Number of Sequences: 62578
Number of extensions: 345815
Number of successful extensions: 1408
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 1293
Number of HSP's gapped (non-prelim): 151
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)