Query 022896
Match_columns 290
No_of_seqs 175 out of 1920
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 06:56:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1249 Lpd Pyruvate/2-oxoglut 100.0 2.5E-39 5.4E-44 272.6 20.0 272 12-286 3-322 (454)
2 PRK05249 soluble pyridine nucl 100.0 7.8E-39 1.7E-43 277.3 22.1 269 12-283 4-319 (461)
3 PRK06116 glutathione reductase 100.0 7.3E-39 1.6E-43 276.3 20.7 265 13-282 4-311 (450)
4 PLN02507 glutathione reductase 100.0 1.9E-38 4E-43 275.1 22.8 270 11-283 23-347 (499)
5 TIGR01424 gluta_reduc_2 glutat 100.0 1.5E-38 3.2E-43 273.6 21.5 267 13-283 2-310 (446)
6 PRK08010 pyridine nucleotide-d 100.0 2.4E-38 5.2E-43 272.4 21.5 269 13-285 3-303 (441)
7 COG1252 Ndh NADH dehydrogenase 100.0 4E-37 8.6E-42 253.0 27.1 264 12-281 2-306 (405)
8 TIGR01421 gluta_reduc_1 glutat 100.0 5E-38 1.1E-42 270.0 21.0 266 13-283 2-312 (450)
9 PTZ00318 NADH dehydrogenase-li 100.0 6.1E-37 1.3E-41 261.8 27.2 262 11-279 8-321 (424)
10 PRK07846 mycothione reductase; 100.0 4E-37 8.6E-42 264.3 23.0 266 13-284 1-310 (451)
11 PRK06416 dihydrolipoamide dehy 100.0 1.8E-37 4E-42 268.6 20.4 266 12-282 3-317 (462)
12 PRK06467 dihydrolipoamide dehy 100.0 2E-37 4.4E-42 267.7 20.3 266 13-282 4-320 (471)
13 PRK06370 mercuric reductase; V 100.0 5.9E-37 1.3E-41 265.2 21.4 267 12-283 4-318 (463)
14 PRK07251 pyridine nucleotide-d 100.0 1E-36 2.2E-41 262.1 22.2 267 13-283 3-300 (438)
15 PLN02546 glutathione reductase 100.0 1.7E-36 3.7E-41 264.0 22.8 268 12-283 78-397 (558)
16 PRK09754 phenylpropionate diox 100.0 1.1E-35 2.5E-40 252.3 26.9 261 13-281 3-282 (396)
17 PRK13512 coenzyme A disulfide 100.0 1E-35 2.2E-40 255.3 26.1 257 14-279 2-282 (438)
18 TIGR02053 MerA mercuric reduct 100.0 1E-36 2.2E-41 263.9 20.1 265 14-282 1-312 (463)
19 PRK04965 NADH:flavorubredoxin 100.0 1.4E-35 3E-40 250.5 26.1 260 13-280 2-279 (377)
20 TIGR01423 trypano_reduc trypan 100.0 2.4E-36 5.3E-41 260.3 21.6 271 12-283 2-335 (486)
21 PRK14989 nitrite reductase sub 100.0 1.1E-35 2.5E-40 269.4 26.5 264 13-281 3-288 (847)
22 PRK13748 putative mercuric red 100.0 5.5E-36 1.2E-40 265.3 23.4 266 12-283 97-412 (561)
23 TIGR03452 mycothione_red mycot 100.0 8.3E-36 1.8E-40 256.4 23.2 265 13-283 2-312 (452)
24 PRK14694 putative mercuric red 100.0 6.8E-36 1.5E-40 258.6 21.9 267 10-283 3-319 (468)
25 PRK07818 dihydrolipoamide dehy 100.0 5.9E-36 1.3E-40 259.1 21.1 267 13-283 4-320 (466)
26 PRK06292 dihydrolipoamide dehy 100.0 8.3E-36 1.8E-40 258.3 21.4 265 13-283 3-315 (460)
27 PRK07845 flavoprotein disulfid 100.0 8.7E-36 1.9E-40 257.4 20.7 267 13-283 1-321 (466)
28 PRK14727 putative mercuric red 100.0 2.5E-35 5.3E-40 255.5 22.8 267 12-283 15-330 (479)
29 PRK06327 dihydrolipoamide dehy 100.0 1.1E-35 2.4E-40 257.6 19.5 266 13-281 4-329 (475)
30 PTZ00058 glutathione reductase 100.0 4.2E-35 9.1E-40 255.1 23.1 263 11-279 46-378 (561)
31 PRK06115 dihydrolipoamide dehy 100.0 1.9E-35 4.1E-40 255.3 20.2 267 13-283 3-322 (466)
32 TIGR01350 lipoamide_DH dihydro 100.0 2.4E-35 5.2E-40 255.6 20.7 263 13-281 1-314 (461)
33 TIGR03169 Nterm_to_SelD pyridi 100.0 1.9E-34 4.1E-39 242.9 25.0 257 15-280 1-285 (364)
34 PRK05976 dihydrolipoamide dehy 100.0 5.7E-35 1.2E-39 253.3 21.6 264 12-280 3-324 (472)
35 PRK09564 coenzyme A disulfide 100.0 2.2E-34 4.7E-39 248.6 25.0 261 14-280 1-288 (444)
36 TIGR02374 nitri_red_nirB nitri 100.0 4.2E-34 9.1E-39 259.5 25.4 259 16-281 1-279 (785)
37 PTZ00052 thioredoxin reductase 100.0 6.1E-34 1.3E-38 247.2 25.0 260 13-277 5-318 (499)
38 TIGR01438 TGR thioredoxin and 100.0 3.4E-34 7.4E-39 247.6 22.0 261 13-277 2-321 (484)
39 TIGR01292 TRX_reduct thioredox 100.0 2.2E-34 4.8E-39 236.8 19.5 251 14-277 1-276 (300)
40 COG0492 TrxB Thioredoxin reduc 100.0 3.7E-34 7.9E-39 230.5 18.8 255 12-280 2-279 (305)
41 PRK06912 acoL dihydrolipoamide 100.0 1E-33 2.3E-38 244.4 21.3 263 15-282 2-313 (458)
42 PTZ00153 lipoamide dehydrogena 100.0 1.1E-33 2.5E-38 249.2 20.8 204 77-283 249-479 (659)
43 PRK10262 thioredoxin reductase 100.0 6.3E-33 1.4E-37 229.6 20.1 257 12-279 5-292 (321)
44 TIGR03140 AhpF alkyl hydropero 100.0 1.1E-32 2.5E-37 240.5 19.4 256 11-280 210-491 (515)
45 KOG0405 Pyridine nucleotide-di 100.0 8.1E-33 1.8E-37 216.4 15.9 271 12-285 19-336 (478)
46 KOG1335 Dihydrolipoamide dehyd 100.0 1.3E-32 2.7E-37 217.9 16.6 271 12-285 38-363 (506)
47 PRK15317 alkyl hydroperoxide r 100.0 2.5E-32 5.5E-37 238.7 18.6 255 12-280 210-490 (517)
48 TIGR03143 AhpF_homolog putativ 100.0 2E-31 4.4E-36 234.3 20.1 252 13-277 4-284 (555)
49 KOG1336 Monodehydroascorbate/f 100.0 1.5E-30 3.2E-35 212.7 22.5 264 12-282 73-356 (478)
50 TIGR01316 gltA glutamate synth 100.0 3.8E-31 8.3E-36 227.2 18.1 254 11-280 131-429 (449)
51 PRK12831 putative oxidoreducta 100.0 8.6E-31 1.9E-35 225.4 17.7 258 10-281 137-441 (464)
52 PRK09853 putative selenate red 100.0 1.7E-30 3.7E-35 234.9 20.3 254 11-281 537-822 (1019)
53 TIGR03315 Se_ygfK putative sel 100.0 2.4E-29 5.2E-34 228.5 20.0 252 12-281 536-820 (1012)
54 PRK12779 putative bifunctional 100.0 3.7E-29 8.1E-34 229.2 21.4 256 11-280 304-606 (944)
55 PRK11749 dihydropyrimidine deh 100.0 1.6E-29 3.4E-34 218.4 18.0 256 11-280 138-431 (457)
56 PRK12770 putative glutamate sy 100.0 2.3E-29 5E-34 210.5 16.8 259 12-282 17-331 (352)
57 PRK12778 putative bifunctional 100.0 2.5E-29 5.5E-34 228.6 16.1 257 11-281 429-730 (752)
58 TIGR03385 CoA_CoA_reduc CoA-di 100.0 4.6E-28 1E-32 208.1 22.5 248 27-281 1-276 (427)
59 KOG2495 NADH-dehydrogenase (ub 100.0 3.1E-28 6.7E-33 195.9 19.4 265 11-280 53-373 (491)
60 PRK12810 gltD glutamate syntha 100.0 4.7E-28 1E-32 209.5 19.2 259 11-280 141-444 (471)
61 KOG4716 Thioredoxin reductase 100.0 8.7E-29 1.9E-33 193.3 12.6 267 10-280 16-345 (503)
62 PRK12814 putative NADPH-depend 100.0 2E-28 4.4E-33 218.6 16.5 255 12-281 192-481 (652)
63 PRK12775 putative trifunctiona 100.0 9.4E-28 2E-32 221.9 18.5 256 12-280 429-734 (1006)
64 COG1251 NirB NAD(P)H-nitrite r 100.0 2.6E-27 5.7E-32 202.7 17.8 261 13-280 3-283 (793)
65 KOG0404 Thioredoxin reductase 100.0 4E-27 8.7E-32 173.8 14.7 256 13-280 8-297 (322)
66 TIGR01318 gltD_gamma_fam gluta 100.0 1.3E-26 2.8E-31 199.9 19.8 254 12-281 140-446 (467)
67 PRK12769 putative oxidoreducta 99.9 1.9E-26 4.1E-31 206.8 20.2 255 12-281 326-632 (654)
68 COG3634 AhpF Alkyl hydroperoxi 99.9 2E-27 4.4E-32 186.4 11.4 255 12-282 210-495 (520)
69 TIGR01372 soxA sarcosine oxida 99.9 3.1E-26 6.6E-31 212.9 21.2 257 12-282 162-454 (985)
70 PRK13984 putative oxidoreducta 99.9 7.6E-26 1.6E-30 201.9 16.9 259 11-281 281-583 (604)
71 TIGR01317 GOGAT_sm_gam glutama 99.9 2.2E-25 4.8E-30 193.0 18.2 259 12-281 142-459 (485)
72 PLN02852 ferredoxin-NADP+ redu 99.9 5.7E-25 1.2E-29 187.9 19.4 262 10-280 23-400 (491)
73 KOG1346 Programmed cell death 99.9 5.8E-25 1.2E-29 176.5 17.9 268 11-282 176-493 (659)
74 PRK12809 putative oxidoreducta 99.9 5.4E-25 1.2E-29 196.7 19.7 255 12-281 309-615 (639)
75 PLN02172 flavin-containing mon 99.9 9.2E-26 2E-30 193.3 13.3 249 12-276 9-329 (461)
76 COG0446 HcaD Uncharacterized N 99.9 4.4E-24 9.6E-29 183.4 23.1 263 16-282 1-283 (415)
77 KOG3851 Sulfide:quinone oxidor 99.9 3E-24 6.4E-29 166.8 14.0 268 12-285 38-343 (446)
78 PRK12771 putative glutamate sy 99.9 4.7E-24 1E-28 188.7 16.5 257 11-281 135-424 (564)
79 PF00743 FMO-like: Flavin-bind 99.9 3.2E-22 7E-27 173.7 12.7 252 14-276 2-372 (531)
80 COG3486 IucD Lysine/ornithine 99.8 3.2E-19 7E-24 143.9 19.8 270 11-280 3-390 (436)
81 PF07992 Pyr_redox_2: Pyridine 99.8 5.5E-22 1.2E-26 153.5 1.9 170 15-280 1-201 (201)
82 KOG2755 Oxidoreductase [Genera 99.8 3.4E-20 7.4E-25 140.4 10.3 264 15-289 1-333 (334)
83 PF13434 K_oxygenase: L-lysine 99.8 3.3E-20 7.2E-25 153.1 10.7 222 13-234 2-340 (341)
84 PRK06567 putative bifunctional 99.8 7.5E-19 1.6E-23 158.1 14.3 227 10-240 380-733 (1028)
85 COG0493 GltD NADPH-dependent g 99.8 8.4E-19 1.8E-23 148.7 11.7 260 11-279 121-429 (457)
86 KOG0399 Glutamate synthase [Am 99.8 8.9E-19 1.9E-23 155.6 10.1 263 7-280 1779-2099(2142)
87 PF13738 Pyr_redox_3: Pyridine 99.8 7.5E-19 1.6E-23 136.2 7.1 154 17-172 1-201 (203)
88 KOG1399 Flavin-containing mono 99.8 4.4E-18 9.5E-23 143.7 11.1 218 12-245 5-279 (448)
89 COG2072 TrkA Predicted flavopr 99.8 4.8E-18 1E-22 145.3 11.0 162 10-173 5-210 (443)
90 COG1148 HdrA Heterodisulfide r 99.7 4.7E-15 1E-19 122.2 18.8 180 99-283 298-528 (622)
91 PTZ00188 adrenodoxin reductase 99.6 6.2E-15 1.3E-19 124.7 15.0 138 12-156 38-217 (506)
92 PRK05329 anaerobic glycerol-3- 99.6 1.6E-14 3.5E-19 122.1 16.3 142 139-282 218-396 (422)
93 COG2081 Predicted flavoprotein 99.6 4.8E-14 1E-18 114.5 14.8 70 178-247 110-188 (408)
94 KOG1800 Ferredoxin/adrenodoxin 99.6 9.3E-14 2E-18 111.3 15.4 139 12-157 19-180 (468)
95 PF03486 HI0933_like: HI0933-l 99.4 3.4E-12 7.4E-17 107.8 14.0 58 179-236 109-167 (409)
96 PF00070 Pyr_redox: Pyridine n 99.4 2.8E-12 6E-17 83.3 10.3 80 138-219 1-80 (80)
97 PF01266 DAO: FAD dependent ox 99.4 7E-13 1.5E-17 111.7 9.1 66 178-245 146-212 (358)
98 COG4529 Uncharacterized protei 99.4 4.2E-11 9.1E-16 100.0 18.6 159 13-171 1-231 (474)
99 COG0579 Predicted dehydrogenas 99.3 1.1E-11 2.4E-16 104.0 10.5 209 12-246 2-221 (429)
100 TIGR01377 soxA_mon sarcosine o 99.3 4.8E-11 1E-15 101.5 13.7 64 180-245 146-209 (380)
101 TIGR01373 soxB sarcosine oxida 99.3 7.5E-11 1.6E-15 101.2 14.3 55 180-235 184-240 (407)
102 TIGR00292 thiazole biosynthesi 99.3 4.4E-11 9.5E-16 95.0 11.7 38 11-48 19-57 (254)
103 PTZ00383 malate:quinone oxidor 99.3 4.5E-11 9.8E-16 103.6 12.1 64 180-245 212-282 (497)
104 PRK10157 putative oxidoreducta 99.3 6.7E-11 1.5E-15 101.8 13.0 56 180-235 109-164 (428)
105 PRK12409 D-amino acid dehydrog 99.3 4.5E-11 9.7E-16 102.7 11.9 61 180-241 198-263 (410)
106 COG0644 FixC Dehydrogenases (f 99.3 1.1E-10 2.3E-15 99.7 13.5 56 180-235 96-152 (396)
107 TIGR03378 glycerol3P_GlpB glyc 99.3 1.3E-09 2.8E-14 91.6 19.2 106 177-282 261-398 (419)
108 PRK11728 hydroxyglutarate oxid 99.3 6.6E-11 1.4E-15 101.0 11.7 64 179-244 149-212 (393)
109 PRK11259 solA N-methyltryptoph 99.2 1.2E-10 2.6E-15 98.9 12.9 61 179-241 149-209 (376)
110 PRK10015 oxidoreductase; Provi 99.2 1.6E-10 3.5E-15 99.4 13.3 56 180-235 109-164 (429)
111 PRK13977 myosin-cross-reactive 99.2 7.1E-10 1.5E-14 96.2 16.3 42 11-52 20-66 (576)
112 PRK04176 ribulose-1,5-biphosph 99.2 2.3E-10 4.9E-15 91.3 12.3 97 180-278 105-225 (257)
113 PRK08773 2-octaprenyl-3-methyl 99.2 3E-10 6.5E-15 97.0 12.6 57 180-236 114-170 (392)
114 PRK13339 malate:quinone oxidor 99.2 1.8E-10 3.8E-15 99.7 10.9 66 179-245 184-256 (497)
115 PRK06847 hypothetical protein; 99.2 2.2E-10 4.7E-15 97.3 11.2 58 180-237 108-165 (375)
116 PRK11101 glpA sn-glycerol-3-ph 99.2 2.8E-10 6.1E-15 100.7 12.0 66 179-245 149-220 (546)
117 PRK08163 salicylate hydroxylas 99.2 3E-10 6.4E-15 97.2 11.5 58 180-237 110-168 (396)
118 KOG2820 FAD-dependent oxidored 99.2 8E-10 1.7E-14 87.9 12.8 197 11-242 5-218 (399)
119 PRK08020 ubiF 2-octaprenyl-3-m 99.2 4E-10 8.7E-15 96.3 12.2 57 180-236 113-170 (391)
120 COG0654 UbiH 2-polyprenyl-6-me 99.2 6.1E-10 1.3E-14 94.8 12.7 58 180-237 105-164 (387)
121 TIGR03364 HpnW_proposed FAD de 99.2 7.4E-10 1.6E-14 93.7 13.1 52 179-235 145-197 (365)
122 PRK05257 malate:quinone oxidor 99.2 5.7E-10 1.2E-14 97.1 12.5 66 179-245 183-255 (494)
123 PRK07333 2-octaprenyl-6-methox 99.1 4.6E-10 9.9E-15 96.3 11.8 57 180-236 112-168 (403)
124 PRK07190 hypothetical protein; 99.1 5.3E-10 1.2E-14 97.5 12.1 56 180-235 110-165 (487)
125 PRK07608 ubiquinone biosynthes 99.1 6.9E-10 1.5E-14 94.7 12.5 56 180-236 112-168 (388)
126 TIGR02032 GG-red-SF geranylger 99.1 1.4E-09 3E-14 89.2 13.5 56 180-235 92-148 (295)
127 PLN02463 lycopene beta cyclase 99.1 1.6E-09 3.5E-14 93.1 14.2 56 180-236 115-170 (447)
128 PRK05714 2-octaprenyl-3-methyl 99.1 5E-10 1.1E-14 96.1 10.9 58 180-237 113-170 (405)
129 PRK12842 putative succinate de 99.1 3.8E-11 8.2E-16 107.0 3.9 100 134-235 155-275 (574)
130 TIGR03329 Phn_aa_oxid putative 99.1 1E-09 2.2E-14 95.5 12.6 55 179-235 183-237 (460)
131 PRK08013 oxidoreductase; Provi 99.1 1.3E-09 2.8E-14 93.3 12.9 58 180-237 112-170 (400)
132 TIGR01320 mal_quin_oxido malat 99.1 6.8E-10 1.5E-14 96.5 11.3 66 179-245 178-249 (483)
133 PRK07494 2-octaprenyl-6-methox 99.1 1.5E-09 3.3E-14 92.6 13.2 56 180-236 112-168 (388)
134 TIGR00275 flavoprotein, HI0933 99.1 3.3E-09 7.2E-14 90.5 14.2 57 178-235 104-160 (400)
135 PRK09897 hypothetical protein; 99.1 1.8E-09 3.8E-14 94.4 12.6 145 13-158 1-213 (534)
136 PRK11883 protoporphyrinogen ox 99.1 2.1E-09 4.6E-14 93.6 13.1 39 195-233 235-273 (451)
137 PRK00711 D-amino acid dehydrog 99.1 1.5E-09 3.2E-14 93.6 11.9 62 180-243 202-264 (416)
138 COG1233 Phytoene dehydrogenase 99.1 4.3E-10 9.3E-15 98.2 8.5 54 180-233 225-279 (487)
139 PRK07364 2-octaprenyl-6-methox 99.1 1.3E-09 2.8E-14 93.9 11.2 58 180-237 122-183 (415)
140 COG2509 Uncharacterized FAD-de 99.1 7.2E-09 1.6E-13 85.9 14.8 72 169-241 163-235 (486)
141 PRK06834 hypothetical protein; 99.1 2.1E-09 4.5E-14 94.0 12.4 58 180-237 101-158 (488)
142 TIGR01988 Ubi-OHases Ubiquinon 99.1 2.9E-09 6.3E-14 90.8 12.9 57 180-236 107-164 (385)
143 PRK01747 mnmC bifunctional tRN 99.1 9.5E-10 2.1E-14 99.9 10.1 56 179-235 408-463 (662)
144 PRK09126 hypothetical protein; 99.0 5.9E-09 1.3E-13 89.1 13.7 57 181-237 112-169 (392)
145 PTZ00363 rab-GDP dissociation 99.0 1.4E-08 3.1E-13 86.9 15.9 57 180-236 233-291 (443)
146 PRK07233 hypothetical protein; 99.0 1.8E-09 3.8E-14 93.6 10.5 55 180-234 199-253 (434)
147 PRK08849 2-octaprenyl-3-methyl 99.0 3.9E-09 8.4E-14 89.9 12.0 58 180-237 111-169 (384)
148 PRK07588 hypothetical protein; 99.0 2.3E-09 5E-14 91.6 10.3 57 180-237 104-160 (391)
149 PRK06184 hypothetical protein; 99.0 2.7E-09 5.8E-14 94.0 10.7 56 180-235 110-168 (502)
150 COG2907 Predicted NAD/FAD-bind 99.0 5.4E-10 1.2E-14 89.2 5.4 43 13-55 8-50 (447)
151 TIGR01984 UbiH 2-polyprenyl-6- 99.0 3.8E-09 8.3E-14 90.0 11.1 56 180-235 106-162 (382)
152 PF01494 FAD_binding_3: FAD bi 99.0 1.4E-09 3E-14 91.6 8.1 57 180-236 112-173 (356)
153 PRK05868 hypothetical protein; 99.0 3.4E-09 7.5E-14 89.7 10.5 57 180-237 106-162 (372)
154 PRK07045 putative monooxygenas 99.0 6.5E-09 1.4E-13 88.7 12.0 58 180-237 107-167 (388)
155 PRK12416 protoporphyrinogen ox 99.0 2.5E-09 5.3E-14 93.4 9.4 52 180-233 227-278 (463)
156 PRK08244 hypothetical protein; 99.0 7.3E-09 1.6E-13 91.1 11.9 57 180-236 101-160 (493)
157 PRK12266 glpD glycerol-3-phosp 99.0 5.3E-09 1.2E-13 91.9 10.8 62 179-241 155-221 (508)
158 PRK13369 glycerol-3-phosphate 99.0 6.5E-09 1.4E-13 91.4 11.2 62 179-241 155-220 (502)
159 PRK06617 2-octaprenyl-6-methox 99.0 6.5E-09 1.4E-13 88.2 10.8 57 180-237 105-162 (374)
160 PRK06183 mhpA 3-(3-hydroxyphen 98.9 1.8E-08 4E-13 89.5 13.7 58 180-237 114-176 (538)
161 PRK06185 hypothetical protein; 98.9 2.2E-08 4.8E-13 86.0 13.8 56 180-235 109-169 (407)
162 COG0665 DadA Glycine/D-amino a 98.9 6.3E-09 1.4E-13 88.8 10.3 56 179-235 156-212 (387)
163 PRK07843 3-ketosteroid-delta-1 98.9 1.6E-09 3.4E-14 96.2 6.5 106 135-242 159-277 (557)
164 PRK06996 hypothetical protein; 98.9 2.1E-08 4.6E-13 85.8 13.0 54 180-233 116-172 (398)
165 PRK08850 2-octaprenyl-6-methox 98.9 3.2E-08 7E-13 84.9 14.1 57 180-236 112-169 (405)
166 TIGR01292 TRX_reduct thioredox 98.9 2.3E-08 5.1E-13 82.2 12.6 101 138-241 2-118 (300)
167 PRK05732 2-octaprenyl-6-methox 98.9 1.4E-08 3.1E-13 86.9 11.7 57 180-236 113-170 (395)
168 PF13450 NAD_binding_8: NAD(P) 98.9 1.1E-09 2.3E-14 68.3 3.5 37 18-54 1-38 (68)
169 PRK06134 putative FAD-binding 98.9 7.5E-10 1.6E-14 98.8 3.7 58 179-236 217-279 (581)
170 PRK06753 hypothetical protein; 98.9 5.1E-09 1.1E-13 88.9 8.6 55 180-236 99-153 (373)
171 TIGR00562 proto_IX_ox protopor 98.9 1.6E-08 3.6E-13 88.3 11.9 41 194-234 238-278 (462)
172 COG1232 HemY Protoporphyrinoge 98.9 6E-09 1.3E-13 88.3 8.7 60 180-242 216-275 (444)
173 TIGR01790 carotene-cycl lycope 98.9 2.6E-08 5.7E-13 85.0 12.8 55 180-235 86-141 (388)
174 TIGR02023 BchP-ChlP geranylger 98.9 1.8E-08 4E-13 85.9 11.7 55 180-235 93-155 (388)
175 PLN02697 lycopene epsilon cycl 98.9 2.2E-08 4.9E-13 87.5 12.3 55 180-235 193-248 (529)
176 PRK08243 4-hydroxybenzoate 3-m 98.9 2.5E-08 5.4E-13 85.2 12.2 58 180-237 104-165 (392)
177 PF05834 Lycopene_cycl: Lycope 98.9 4.4E-08 9.6E-13 83.0 13.4 55 180-235 88-142 (374)
178 TIGR02734 crtI_fam phytoene de 98.9 2.4E-08 5.3E-13 88.1 12.3 55 180-234 220-275 (502)
179 COG1635 THI4 Ribulose 1,5-bisp 98.9 1.3E-09 2.9E-14 81.6 3.4 38 12-49 29-67 (262)
180 COG1231 Monoamine oxidase [Ami 98.9 2.9E-08 6.2E-13 82.7 11.1 45 12-56 6-51 (450)
181 PRK06475 salicylate hydroxylas 98.9 3.6E-08 7.9E-13 84.4 11.8 58 180-237 108-169 (400)
182 PRK06481 fumarate reductase fl 98.9 3.6E-08 7.9E-13 86.7 11.9 64 179-242 190-259 (506)
183 TIGR01989 COQ6 Ubiquinone bios 98.8 4.5E-08 9.8E-13 84.8 12.2 58 180-237 118-185 (437)
184 PLN02464 glycerol-3-phosphate 98.8 6.9E-08 1.5E-12 86.8 13.6 64 178-242 231-302 (627)
185 PRK08132 FAD-dependent oxidore 98.8 4.7E-08 1E-12 87.1 12.5 58 180-237 126-187 (547)
186 TIGR02730 carot_isom carotene 98.8 2E-08 4.4E-13 88.3 10.0 57 179-235 229-286 (493)
187 PRK06175 L-aspartate oxidase; 98.8 4E-08 8.7E-13 84.7 11.5 39 12-50 3-41 (433)
188 PF01946 Thi4: Thi4 family; PD 98.8 3E-09 6.4E-14 80.1 3.6 38 12-49 16-54 (230)
189 PRK11445 putative oxidoreducta 98.8 5.3E-08 1.1E-12 81.9 11.3 55 180-235 100-157 (351)
190 TIGR01813 flavo_cyto_c flavocy 98.8 1.1E-08 2.4E-13 88.7 6.8 63 179-241 130-199 (439)
191 PF01134 GIDA: Glucose inhibit 98.8 9.8E-09 2.1E-13 85.4 6.1 97 15-111 1-150 (392)
192 PRK05192 tRNA uridine 5-carbox 98.8 1.8E-08 3.9E-13 88.5 7.9 34 12-45 3-37 (618)
193 PLN02612 phytoene desaturase 98.8 5.8E-08 1.3E-12 86.5 11.2 54 180-233 309-364 (567)
194 PRK08274 tricarballylate dehyd 98.8 5.3E-08 1.1E-12 85.2 10.7 55 179-233 131-190 (466)
195 TIGR02731 phytoene_desat phyto 98.8 8E-08 1.7E-12 83.7 11.7 56 179-234 213-275 (453)
196 PF06039 Mqo: Malate:quinone o 98.8 7.6E-08 1.7E-12 80.6 10.8 83 180-263 182-271 (488)
197 TIGR01789 lycopene_cycl lycope 98.7 3.7E-08 8E-13 83.2 8.1 99 15-113 1-138 (370)
198 KOG2853 Possible oxidoreductas 98.7 3.6E-07 7.8E-12 73.2 12.8 208 13-245 86-329 (509)
199 PLN02487 zeta-carotene desatur 98.7 1.2E-07 2.6E-12 83.8 11.2 63 180-242 296-367 (569)
200 PF13738 Pyr_redox_3: Pyridine 98.7 8.4E-08 1.8E-12 74.2 9.1 93 140-234 1-137 (203)
201 TIGR03219 salicylate_mono sali 98.7 6.9E-08 1.5E-12 83.2 8.9 55 180-236 106-160 (414)
202 PRK09754 phenylpropionate diox 98.7 1.5E-07 3.1E-12 80.6 10.7 100 136-237 3-114 (396)
203 KOG0029 Amine oxidase [Seconda 98.7 1.6E-08 3.4E-13 87.8 4.6 46 9-54 11-57 (501)
204 PRK08401 L-aspartate oxidase; 98.7 1.2E-07 2.5E-12 82.7 9.9 56 179-236 120-176 (466)
205 PRK08205 sdhA succinate dehydr 98.7 1.3E-07 2.8E-12 84.7 10.3 57 179-235 140-206 (583)
206 PRK07538 hypothetical protein; 98.7 2.5E-07 5.4E-12 79.7 11.8 57 180-236 103-166 (413)
207 PRK09564 coenzyme A disulfide 98.7 2.1E-07 4.5E-12 81.0 11.3 103 137-239 1-119 (444)
208 COG0578 GlpA Glycerol-3-phosph 98.7 7.2E-08 1.6E-12 83.1 8.1 64 179-243 164-232 (532)
209 PRK07804 L-aspartate oxidase; 98.7 2.7E-07 5.9E-12 81.8 11.3 39 11-49 14-53 (541)
210 KOG2665 Predicted FAD-dependen 98.6 2.9E-07 6.2E-12 73.0 9.5 65 180-245 197-266 (453)
211 PRK07236 hypothetical protein; 98.6 1.5E-07 3.2E-12 80.3 8.6 34 13-46 6-40 (386)
212 PF04820 Trp_halogenase: Trypt 98.6 7.2E-08 1.6E-12 83.5 6.6 55 180-235 155-211 (454)
213 PRK05945 sdhA succinate dehydr 98.6 9.8E-07 2.1E-11 79.0 13.7 57 179-235 135-197 (575)
214 PLN00128 Succinate dehydrogena 98.6 3.3E-07 7.1E-12 82.5 10.4 39 12-50 49-88 (635)
215 PRK09078 sdhA succinate dehydr 98.6 3E-07 6.5E-12 82.5 10.1 56 179-234 149-211 (598)
216 PRK06069 sdhA succinate dehydr 98.6 9.6E-07 2.1E-11 79.1 13.2 55 180-234 138-199 (577)
217 PLN00093 geranylgeranyl diphos 98.6 4.5E-08 9.8E-13 84.6 4.5 39 8-46 34-73 (450)
218 TIGR03140 AhpF alkyl hydropero 98.6 8.8E-07 1.9E-11 78.3 12.4 101 135-237 211-325 (515)
219 COG0029 NadB Aspartate oxidase 98.6 3.1E-07 6.8E-12 77.3 8.7 32 15-46 9-40 (518)
220 PF13454 NAD_binding_9: FAD-NA 98.6 3.3E-07 7.1E-12 67.6 8.0 34 78-111 118-155 (156)
221 PTZ00139 Succinate dehydrogena 98.6 9.1E-07 2E-11 79.6 12.2 56 179-234 166-228 (617)
222 TIGR01812 sdhA_frdA_Gneg succi 98.6 1.4E-06 3.1E-11 78.0 13.0 55 180-234 130-190 (566)
223 PLN02172 flavin-containing mon 98.5 2.8E-06 6.1E-11 73.7 14.4 104 135-240 9-180 (461)
224 TIGR03169 Nterm_to_SelD pyridi 98.5 6E-07 1.3E-11 76.0 10.0 100 138-240 1-112 (364)
225 PRK15317 alkyl hydroperoxide r 98.5 1.3E-06 2.8E-11 77.3 12.4 100 136-237 211-324 (517)
226 PRK07803 sdhA succinate dehydr 98.5 1.3E-06 2.9E-11 78.7 12.6 37 12-48 7-44 (626)
227 PRK07057 sdhA succinate dehydr 98.5 1.4E-06 3E-11 78.1 12.6 40 10-49 9-49 (591)
228 PRK04965 NADH:flavorubredoxin 98.5 8.4E-07 1.8E-11 75.4 10.7 101 137-240 3-116 (377)
229 PRK07208 hypothetical protein; 98.5 8E-08 1.7E-12 84.4 4.5 55 180-234 219-279 (479)
230 PRK13512 coenzyme A disulfide 98.5 1.1E-06 2.4E-11 76.1 11.5 102 137-238 2-120 (438)
231 PRK08958 sdhA succinate dehydr 98.5 4.9E-07 1.1E-11 80.9 9.4 56 179-234 143-205 (588)
232 PRK14989 nitrite reductase sub 98.5 8.3E-07 1.8E-11 82.3 10.4 104 136-241 3-119 (847)
233 PRK06263 sdhA succinate dehydr 98.5 2.1E-06 4.6E-11 76.4 11.8 56 179-234 134-196 (543)
234 TIGR00551 nadB L-aspartate oxi 98.5 1.2E-06 2.6E-11 77.0 9.8 57 179-235 128-189 (488)
235 PLN02268 probable polyamine ox 98.4 2.1E-07 4.5E-12 80.8 4.4 41 193-233 210-250 (435)
236 TIGR00136 gidA glucose-inhibit 98.4 8.1E-07 1.8E-11 78.2 8.0 32 14-45 1-33 (617)
237 COG3380 Predicted NAD/FAD-depe 98.4 2.5E-07 5.5E-12 71.8 4.2 38 14-51 2-40 (331)
238 PTZ00318 NADH dehydrogenase-li 98.4 2.9E-06 6.4E-11 73.2 11.1 101 135-238 9-128 (424)
239 COG3349 Uncharacterized conser 98.4 2.5E-07 5.4E-12 78.6 4.1 41 14-54 1-42 (485)
240 PLN02576 protoporphyrinogen ox 98.4 3.1E-07 6.7E-12 81.1 4.9 42 12-53 11-54 (496)
241 PF12831 FAD_oxidored: FAD dep 98.4 3E-07 6.4E-12 79.3 4.5 36 15-50 1-37 (428)
242 TIGR02360 pbenz_hydroxyl 4-hyd 98.4 3E-07 6.4E-12 78.5 4.4 34 13-46 2-36 (390)
243 TIGR00031 UDP-GALP_mutase UDP- 98.4 3.4E-07 7.4E-12 76.8 4.5 38 13-50 1-39 (377)
244 TIGR02374 nitri_red_nirB nitri 98.4 1.4E-06 3E-11 80.7 8.7 101 139-241 1-114 (785)
245 PLN02568 polyamine oxidase 98.4 3.6E-07 7.8E-12 80.6 4.4 51 181-233 244-294 (539)
246 COG3075 GlpB Anaerobic glycero 98.4 2.1E-05 4.6E-10 63.0 13.5 105 178-282 257-393 (421)
247 TIGR02028 ChlP geranylgeranyl 98.4 3.9E-07 8.4E-12 77.9 4.1 33 14-46 1-34 (398)
248 TIGR02733 desat_CrtD C-3',4' d 98.3 4.3E-07 9.3E-12 80.0 4.3 56 180-235 233-294 (492)
249 PRK12779 putative bifunctional 98.3 3.5E-06 7.5E-11 79.1 10.2 92 135-236 305-406 (944)
250 PRK06126 hypothetical protein; 98.3 5.2E-07 1.1E-11 80.5 4.5 38 9-46 3-41 (545)
251 PRK07236 hypothetical protein; 98.3 7E-06 1.5E-10 70.1 11.1 100 136-237 6-156 (386)
252 KOG2404 Fumarate reductase, fl 98.3 3.3E-06 7.1E-11 67.4 7.8 47 15-61 11-58 (477)
253 COG1249 Lpd Pyruvate/2-oxoglut 98.3 2.9E-06 6.3E-11 72.8 8.2 97 12-117 172-276 (454)
254 PF07992 Pyr_redox_2: Pyridine 98.3 2.3E-06 4.9E-11 66.0 6.8 103 138-242 1-129 (201)
255 PLN02661 Putative thiazole syn 98.3 8.3E-07 1.8E-11 73.0 4.2 37 12-48 91-129 (357)
256 COG1252 Ndh NADH dehydrogenase 98.3 9.3E-06 2E-10 68.3 10.3 99 136-237 3-113 (405)
257 PLN02985 squalene monooxygenas 98.3 8.6E-07 1.9E-11 78.0 4.3 37 10-46 40-77 (514)
258 PTZ00367 squalene epoxidase; P 98.2 8.3E-07 1.8E-11 78.7 3.8 34 12-45 32-66 (567)
259 TIGR02485 CobZ_N-term precorri 98.2 2.3E-06 5.1E-11 74.1 6.6 64 179-242 123-191 (432)
260 COG0445 GidA Flavin-dependent 98.2 9.9E-07 2.1E-11 75.2 3.9 33 13-45 4-37 (621)
261 PRK10262 thioredoxin reductase 98.2 2.3E-05 5E-10 65.2 12.1 99 135-238 5-120 (321)
262 KOG2415 Electron transfer flav 98.2 1E-06 2.2E-11 72.6 3.6 39 12-50 75-120 (621)
263 PRK05335 tRNA (uracil-5-)-meth 98.2 1.6E-06 3.4E-11 73.3 4.3 35 13-47 2-37 (436)
264 KOG2844 Dimethylglycine dehydr 98.2 7.2E-06 1.6E-10 71.5 8.2 83 162-249 172-256 (856)
265 PRK09853 putative selenate red 98.2 1.8E-05 3.9E-10 73.9 11.2 89 135-235 538-635 (1019)
266 PF00743 FMO-like: Flavin-bind 98.2 1.4E-05 3.1E-10 70.4 10.2 142 136-282 1-199 (531)
267 PRK07251 pyridine nucleotide-d 98.2 7.4E-06 1.6E-10 71.1 8.3 94 13-117 157-257 (438)
268 COG0492 TrxB Thioredoxin reduc 98.2 2.9E-05 6.3E-10 63.4 11.2 98 137-238 4-118 (305)
269 TIGR03143 AhpF_homolog putativ 98.2 2.6E-05 5.7E-10 69.6 11.9 99 137-240 5-119 (555)
270 PLN02927 antheraxanthin epoxid 98.2 1.8E-06 3.8E-11 77.4 4.3 35 11-45 79-114 (668)
271 PLN02676 polyamine oxidase 98.2 2.3E-06 4.9E-11 75.0 4.9 40 194-233 245-284 (487)
272 COG0562 Glf UDP-galactopyranos 98.2 2.1E-06 4.6E-11 68.4 4.2 40 13-52 1-41 (374)
273 TIGR01350 lipoamide_DH dihydro 98.2 7.9E-06 1.7E-10 71.5 8.2 96 13-117 170-273 (461)
274 PRK07121 hypothetical protein; 98.2 2.2E-06 4.7E-11 75.5 4.7 37 12-48 19-56 (492)
275 PF00890 FAD_binding_2: FAD bi 98.2 2.1E-06 4.5E-11 74.1 4.4 35 15-49 1-36 (417)
276 PLN02852 ferredoxin-NADP+ redu 98.2 1.1E-05 2.4E-10 70.1 8.7 92 135-235 25-126 (491)
277 PRK07846 mycothione reductase; 98.1 9.5E-06 2.1E-10 70.6 8.2 95 13-117 166-266 (451)
278 PLN02529 lysine-specific histo 98.1 2.4E-06 5.1E-11 77.5 4.5 43 11-53 158-201 (738)
279 TIGR03385 CoA_CoA_reduc CoA-di 98.1 7.2E-06 1.6E-10 71.0 7.1 95 13-115 137-235 (427)
280 PRK09897 hypothetical protein; 98.1 4.1E-05 9E-10 67.4 11.8 99 137-235 2-166 (534)
281 PRK06416 dihydrolipoamide dehy 98.1 1E-05 2.2E-10 70.8 8.1 96 13-117 172-276 (462)
282 PRK12770 putative glutamate sy 98.1 2.1E-05 4.5E-10 66.3 9.6 99 134-234 16-129 (352)
283 PRK08294 phenol 2-monooxygenas 98.1 2.9E-06 6.3E-11 76.7 4.7 36 11-46 30-67 (634)
284 PLN02328 lysine-specific histo 98.1 3.1E-06 6.7E-11 77.3 4.6 44 11-54 236-280 (808)
285 TIGR02732 zeta_caro_desat caro 98.1 3.1E-06 6.7E-11 74.0 4.1 62 180-241 220-290 (474)
286 PF01134 GIDA: Glucose inhibit 98.1 4.3E-05 9.4E-10 64.0 10.6 93 138-233 1-150 (392)
287 PRK11749 dihydropyrimidine deh 98.1 1.8E-05 3.9E-10 69.1 8.7 89 135-234 139-236 (457)
288 PF06100 Strep_67kDa_ant: Stre 98.1 4.9E-05 1.1E-09 64.8 10.8 57 179-235 207-274 (500)
289 TIGR01424 gluta_reduc_2 glutat 98.1 5.1E-05 1.1E-09 66.1 11.3 97 137-240 3-147 (446)
290 KOG0685 Flavin-containing amin 98.1 3.9E-06 8.4E-11 70.5 4.0 44 11-54 19-64 (498)
291 PRK05249 soluble pyridine nucl 98.1 5.9E-05 1.3E-09 66.1 11.6 97 137-238 6-152 (461)
292 PRK12837 3-ketosteroid-delta-1 98.1 4E-06 8.7E-11 74.1 4.3 35 13-48 7-42 (513)
293 PF00732 GMC_oxred_N: GMC oxid 98.1 3.8E-06 8.2E-11 69.0 3.8 64 182-245 196-268 (296)
294 TIGR01316 gltA glutamate synth 98.1 2E-05 4.2E-10 68.6 8.4 91 135-236 132-232 (449)
295 PRK07395 L-aspartate oxidase; 98.0 5.4E-06 1.2E-10 73.7 4.9 37 12-48 8-44 (553)
296 PRK12831 putative oxidoreducta 98.0 2.5E-05 5.5E-10 68.1 8.9 92 135-236 139-242 (464)
297 PF00070 Pyr_redox: Pyridine n 98.0 6.1E-06 1.3E-10 53.4 3.9 34 15-48 1-35 (80)
298 PRK06452 sdhA succinate dehydr 98.0 5.1E-06 1.1E-10 74.2 4.6 37 12-48 4-41 (566)
299 PRK12834 putative FAD-binding 98.0 5.1E-06 1.1E-10 74.1 4.6 34 12-45 3-37 (549)
300 TIGR03452 mycothione_red mycot 98.0 2.1E-05 4.7E-10 68.5 8.3 95 13-117 169-269 (452)
301 KOG1336 Monodehydroascorbate/f 98.0 3.1E-05 6.6E-10 65.2 8.3 100 135-236 73-182 (478)
302 PRK12775 putative trifunctiona 98.0 2.8E-05 6E-10 73.8 8.8 92 135-236 429-531 (1006)
303 PRK12778 putative bifunctional 98.0 3.3E-05 7E-10 71.6 9.2 92 135-236 430-531 (752)
304 PRK06912 acoL dihydrolipoamide 98.0 2.5E-05 5.5E-10 68.2 8.0 96 13-117 170-272 (458)
305 KOG4254 Phytoene desaturase [C 98.0 3.6E-05 7.8E-10 64.3 8.2 67 180-246 265-333 (561)
306 TIGR02462 pyranose_ox pyranose 98.0 6.5E-06 1.4E-10 72.3 4.2 39 14-52 1-40 (544)
307 PRK07845 flavoprotein disulfid 98.0 7E-05 1.5E-09 65.6 10.6 96 137-236 2-152 (466)
308 COG0446 HcaD Uncharacterized N 98.0 1.9E-05 4.2E-10 68.0 7.0 94 13-114 136-238 (415)
309 PRK08071 L-aspartate oxidase; 98.0 8.1E-06 1.7E-10 72.1 4.7 36 13-48 3-38 (510)
310 KOG1298 Squalene monooxygenase 98.0 7.3E-06 1.6E-10 67.0 4.0 35 11-45 43-78 (509)
311 COG1635 THI4 Ribulose 1,5-bisp 98.0 4.8E-05 1E-09 57.6 8.0 138 136-277 30-229 (262)
312 TIGR02053 MerA mercuric reduct 98.0 2.6E-05 5.7E-10 68.2 7.8 96 13-117 166-270 (463)
313 PRK08641 sdhA succinate dehydr 98.0 7.4E-06 1.6E-10 73.5 4.5 35 13-47 3-38 (589)
314 PRK06327 dihydrolipoamide dehy 98.0 2.9E-05 6.2E-10 68.2 8.0 96 13-117 183-288 (475)
315 PRK12835 3-ketosteroid-delta-1 98.0 8.3E-06 1.8E-10 73.1 4.6 39 12-50 10-49 (584)
316 KOG2614 Kynurenine 3-monooxyge 98.0 8.3E-06 1.8E-10 67.4 4.0 35 13-47 2-37 (420)
317 TIGR01421 gluta_reduc_1 glutat 97.9 2.8E-05 6.1E-10 67.7 7.4 96 13-117 166-269 (450)
318 KOG1399 Flavin-containing mono 97.9 0.00021 4.6E-09 61.4 12.4 140 136-280 6-200 (448)
319 KOG1276 Protoporphyrinogen oxi 97.9 1E-05 2.2E-10 67.1 4.2 42 12-53 10-54 (491)
320 PRK12839 hypothetical protein; 97.9 1.1E-05 2.3E-10 72.1 4.8 40 11-50 6-46 (572)
321 PRK07573 sdhA succinate dehydr 97.9 1E-05 2.2E-10 73.2 4.7 35 12-46 34-69 (640)
322 PRK08626 fumarate reductase fl 97.9 1E-05 2.2E-10 73.4 4.6 37 12-48 4-41 (657)
323 PRK12844 3-ketosteroid-delta-1 97.9 1E-05 2.3E-10 72.1 4.5 37 13-49 6-43 (557)
324 PRK08010 pyridine nucleotide-d 97.9 0.00011 2.5E-09 63.9 10.9 99 137-240 4-136 (441)
325 PRK14694 putative mercuric red 97.9 5.2E-05 1.1E-09 66.4 8.8 94 13-117 178-277 (468)
326 PRK06467 dihydrolipoamide dehy 97.9 0.00011 2.4E-09 64.4 10.7 95 137-236 5-149 (471)
327 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 1E-05 2.2E-10 68.8 4.1 35 14-48 1-36 (433)
328 TIGR01318 gltD_gamma_fam gluta 97.9 5.5E-05 1.2E-09 66.1 8.7 91 135-236 140-239 (467)
329 PRK06116 glutathione reductase 97.9 3.1E-05 6.6E-10 67.6 7.1 96 13-117 167-269 (450)
330 PRK06370 mercuric reductase; V 97.9 4.6E-05 1E-09 66.7 8.3 95 13-116 171-274 (463)
331 PRK07818 dihydrolipoamide dehy 97.9 4.3E-05 9.3E-10 67.0 8.0 96 13-117 172-277 (466)
332 PF13454 NAD_binding_9: FAD-NA 97.9 0.00021 4.6E-09 52.7 10.5 42 193-234 114-156 (156)
333 PLN02815 L-aspartate oxidase 97.9 1.7E-05 3.7E-10 71.0 5.2 37 12-49 28-65 (594)
334 PRK12845 3-ketosteroid-delta-1 97.9 1.3E-05 2.8E-10 71.4 4.4 39 11-50 14-53 (564)
335 PRK06854 adenylylsulfate reduc 97.9 1.1E-05 2.3E-10 72.7 3.9 34 13-46 11-47 (608)
336 TIGR01317 GOGAT_sm_gam glutama 97.9 6.8E-05 1.5E-09 65.9 8.8 89 135-234 142-239 (485)
337 PRK02106 choline dehydrogenase 97.9 1.4E-05 3.1E-10 71.5 4.5 61 186-246 208-273 (560)
338 PLN02661 Putative thiazole syn 97.9 0.00025 5.5E-09 58.7 11.3 99 136-235 92-244 (357)
339 PTZ00188 adrenodoxin reductase 97.9 9.8E-05 2.1E-09 63.7 9.2 91 135-235 38-138 (506)
340 PRK09077 L-aspartate oxidase; 97.9 1.5E-05 3.3E-10 70.8 4.6 36 12-47 7-42 (536)
341 KOG2311 NAD/FAD-utilizing prot 97.9 1.8E-05 3.9E-10 66.5 4.5 35 11-45 26-61 (679)
342 PLN02507 glutathione reductase 97.9 5.6E-05 1.2E-09 66.6 7.8 96 13-117 203-304 (499)
343 COG2072 TrkA Predicted flavopr 97.9 0.00069 1.5E-08 58.8 14.3 140 136-281 8-190 (443)
344 PLN03000 amine oxidase 97.9 1.7E-05 3.7E-10 72.7 4.6 43 12-54 183-226 (881)
345 PTZ00052 thioredoxin reductase 97.9 7.3E-05 1.6E-09 66.0 8.4 95 13-117 182-282 (499)
346 PRK08255 salicylyl-CoA 5-hydro 97.9 1.4E-05 3E-10 74.1 4.0 33 14-46 1-36 (765)
347 PRK05976 dihydrolipoamide dehy 97.8 0.0002 4.3E-09 62.9 11.0 97 136-236 4-155 (472)
348 TIGR03315 Se_ygfK putative sel 97.8 0.00011 2.3E-09 69.1 9.7 88 136-235 537-633 (1012)
349 PRK01438 murD UDP-N-acetylmura 97.8 0.00012 2.5E-09 64.5 9.6 83 135-242 15-97 (480)
350 PRK06292 dihydrolipoamide dehy 97.8 7.8E-05 1.7E-09 65.3 7.8 94 13-117 169-272 (460)
351 PRK12810 gltD glutamate syntha 97.8 0.00012 2.6E-09 64.2 8.7 89 135-234 142-239 (471)
352 PRK08275 putative oxidoreducta 97.8 1.8E-05 4E-10 70.6 3.6 35 12-46 8-45 (554)
353 COG1251 NirB NAD(P)H-nitrite r 97.8 0.00021 4.5E-09 63.6 9.9 107 136-244 3-122 (793)
354 PRK09231 fumarate reductase fl 97.8 2.5E-05 5.4E-10 70.1 4.2 35 13-47 4-41 (582)
355 PTZ00306 NADH-dependent fumara 97.8 3.1E-05 6.6E-10 74.8 4.8 40 11-50 407-447 (1167)
356 TIGR02061 aprA adenosine phosp 97.8 2.6E-05 5.6E-10 69.9 4.0 32 15-46 1-37 (614)
357 COG1053 SdhA Succinate dehydro 97.7 3.5E-05 7.6E-10 68.2 4.7 38 11-48 4-42 (562)
358 TIGR01423 trypano_reduc trypan 97.7 8.1E-05 1.8E-09 65.3 7.0 96 13-117 187-292 (486)
359 KOG0404 Thioredoxin reductase 97.7 0.00044 9.6E-09 52.6 9.7 98 136-237 8-126 (322)
360 PLN02976 amine oxidase 97.7 3.3E-05 7.3E-10 73.8 4.5 42 12-53 692-734 (1713)
361 PRK07512 L-aspartate oxidase; 97.7 3.6E-05 7.9E-10 68.0 4.3 35 11-46 7-41 (513)
362 TIGR01176 fum_red_Fp fumarate 97.7 3.5E-05 7.5E-10 69.1 4.1 35 13-47 3-40 (580)
363 PRK13800 putative oxidoreducta 97.7 3.6E-05 7.8E-10 72.6 4.3 35 12-46 12-47 (897)
364 TIGR01438 TGR thioredoxin and 97.7 0.00017 3.7E-09 63.3 8.2 95 13-117 180-283 (484)
365 PRK12809 putative oxidoreducta 97.7 0.00019 4E-09 65.4 8.6 90 135-235 309-407 (639)
366 PRK13748 putative mercuric red 97.7 0.00021 4.5E-09 64.3 8.3 94 13-117 270-369 (561)
367 PRK14727 putative mercuric red 97.7 0.00022 4.7E-09 62.8 8.2 92 13-117 188-287 (479)
368 PRK12769 putative oxidoreducta 97.7 0.00026 5.6E-09 64.7 8.9 90 135-235 326-424 (654)
369 PTZ00058 glutathione reductase 97.6 0.00014 3E-09 64.8 6.9 96 13-117 237-340 (561)
370 TIGR01789 lycopene_cycl lycope 97.6 0.00056 1.2E-08 58.0 10.2 94 138-235 1-138 (370)
371 PRK12843 putative FAD-binding 97.6 6.1E-05 1.3E-09 67.6 4.5 40 12-51 15-55 (578)
372 PRK12814 putative NADPH-depend 97.6 0.00024 5.3E-09 64.7 8.4 90 135-235 192-290 (652)
373 PRK06115 dihydrolipoamide dehy 97.6 0.00077 1.7E-08 59.1 11.2 95 137-236 4-149 (466)
374 COG3380 Predicted NAD/FAD-depe 97.6 0.00049 1.1E-08 54.0 8.6 102 138-241 3-166 (331)
375 KOG2755 Oxidoreductase [Genera 97.6 0.00015 3.3E-09 56.4 5.8 93 138-236 1-105 (334)
376 PLN02785 Protein HOTHEAD 97.6 7.5E-05 1.6E-09 66.9 4.6 35 12-46 54-88 (587)
377 KOG2960 Protein involved in th 97.6 1.3E-05 2.9E-10 60.1 -0.5 36 13-48 76-114 (328)
378 TIGR01372 soxA sarcosine oxida 97.5 0.0011 2.4E-08 63.4 11.8 101 136-238 163-289 (985)
379 PRK05192 tRNA uridine 5-carbox 97.5 0.0011 2.3E-08 59.1 10.8 95 137-234 5-156 (618)
380 TIGR01811 sdhA_Bsu succinate d 97.5 6.8E-05 1.5E-09 67.5 3.3 30 16-45 1-31 (603)
381 PTZ00153 lipoamide dehydrogena 97.5 0.00033 7.1E-09 63.5 7.6 36 13-48 312-348 (659)
382 COG2303 BetA Choline dehydroge 97.5 0.0001 2.3E-09 65.4 4.4 63 183-245 207-276 (542)
383 PRK06126 hypothetical protein; 97.5 0.0012 2.6E-08 59.2 10.9 55 182-236 129-189 (545)
384 TIGR01810 betA choline dehydro 97.5 0.00012 2.5E-09 65.4 4.0 62 185-246 200-266 (532)
385 KOG0399 Glutamate synthase [Am 97.5 0.00053 1.2E-08 63.8 7.9 90 135-235 1784-1882(2142)
386 PLN02546 glutathione reductase 97.4 0.00044 9.5E-09 61.7 6.7 95 13-116 252-353 (558)
387 PRK12771 putative glutamate sy 97.4 0.001 2.2E-08 59.8 9.0 90 134-235 135-234 (564)
388 PRK13984 putative oxidoreducta 97.4 0.00086 1.9E-08 60.8 8.5 89 135-234 282-379 (604)
389 KOG3851 Sulfide:quinone oxidor 97.4 0.00099 2.2E-08 53.6 7.6 103 135-242 38-152 (446)
390 TIGR00136 gidA glucose-inhibit 97.3 0.0039 8.4E-08 55.6 11.6 95 138-235 2-154 (617)
391 TIGR02360 pbenz_hydroxyl 4-hyd 97.3 0.0041 8.8E-08 53.3 11.5 99 137-237 3-165 (390)
392 COG0493 GltD NADPH-dependent g 97.3 0.0009 1.9E-08 57.9 7.2 89 135-234 122-219 (457)
393 PF12831 FAD_oxidored: FAD dep 97.2 0.00048 1E-08 59.6 5.0 94 138-233 1-148 (428)
394 TIGR02028 ChlP geranylgeranyl 97.2 0.007 1.5E-07 52.0 12.0 95 138-235 2-160 (398)
395 COG3573 Predicted oxidoreducta 97.2 0.00045 9.7E-09 55.9 4.3 34 13-46 5-39 (552)
396 KOG1238 Glucose dehydrogenase/ 97.2 0.00037 8E-09 61.3 4.1 37 11-47 55-93 (623)
397 PRK06567 putative bifunctional 97.1 0.0018 4E-08 60.4 7.7 34 135-170 382-415 (1028)
398 PF01946 Thi4: Thi4 family; PD 97.1 0.0057 1.2E-07 46.8 9.0 100 135-236 16-166 (230)
399 KOG2852 Possible oxidoreductas 97.1 0.00021 4.7E-09 56.4 1.2 41 10-50 7-54 (380)
400 PLN00093 geranylgeranyl diphos 97.1 0.013 2.8E-07 51.1 12.1 97 136-235 39-199 (450)
401 COG4529 Uncharacterized protei 97.0 0.012 2.7E-07 50.3 11.1 37 137-173 2-39 (474)
402 KOG2495 NADH-dehydrogenase (ub 97.0 0.0076 1.7E-07 50.6 9.5 100 135-237 54-172 (491)
403 PRK08294 phenol 2-monooxygenas 97.0 0.015 3.3E-07 53.0 12.4 101 136-237 32-212 (634)
404 KOG0042 Glycerol-3-phosphate d 97.0 0.00035 7.6E-09 59.9 1.7 41 12-52 66-107 (680)
405 KOG3855 Monooxygenase involved 97.0 0.00079 1.7E-08 56.0 3.6 32 13-44 36-72 (481)
406 PF00996 GDI: GDP dissociation 96.9 0.0008 1.7E-08 57.6 3.6 55 180-235 233-289 (438)
407 PLN02927 antheraxanthin epoxid 96.9 0.012 2.5E-07 53.5 10.9 101 134-236 79-249 (668)
408 PRK01438 murD UDP-N-acetylmura 96.9 0.0012 2.6E-08 58.1 4.7 33 13-45 16-49 (480)
409 COG1148 HdrA Heterodisulfide r 96.9 0.0029 6.3E-08 53.9 6.5 83 135-219 123-218 (622)
410 COG0569 TrkA K+ transport syst 96.9 0.0012 2.5E-08 51.8 3.7 33 14-46 1-34 (225)
411 KOG1346 Programmed cell death 96.8 0.0018 3.9E-08 54.0 4.6 104 137-243 179-320 (659)
412 COG4716 Myosin-crossreactive a 96.8 0.0045 9.7E-08 51.1 6.7 55 180-234 228-291 (587)
413 PLN02985 squalene monooxygenas 96.8 0.028 6E-07 50.0 12.0 56 181-237 149-210 (514)
414 COG3634 AhpF Alkyl hydroperoxi 96.8 0.0041 9E-08 50.7 6.1 99 135-235 210-325 (520)
415 COG1004 Ugd Predicted UDP-gluc 96.7 0.0098 2.1E-07 49.6 8.2 32 14-45 1-33 (414)
416 PRK08255 salicylyl-CoA 5-hydro 96.7 0.0097 2.1E-07 55.6 9.2 35 138-172 2-36 (765)
417 KOG1800 Ferredoxin/adrenodoxin 96.7 0.01 2.2E-07 49.2 8.0 90 136-235 20-120 (468)
418 KOG1335 Dihydrolipoamide dehyd 96.7 0.0014 3.1E-08 54.0 3.2 96 12-118 210-319 (506)
419 TIGR00137 gid_trmFO tRNA:m(5)U 96.7 0.0066 1.4E-07 52.0 7.3 34 138-173 2-35 (433)
420 COG0445 GidA Flavin-dependent 96.7 0.0079 1.7E-07 52.2 7.6 95 137-234 5-157 (621)
421 TIGR03197 MnmC_Cterm tRNA U-34 96.7 0.0051 1.1E-07 52.5 6.6 56 179-235 135-190 (381)
422 PF01210 NAD_Gly3P_dh_N: NAD-d 96.6 0.002 4.3E-08 47.5 3.3 31 15-45 1-32 (157)
423 PF13241 NAD_binding_7: Putati 96.6 0.0025 5.4E-08 43.2 3.5 34 12-45 6-40 (103)
424 PRK02705 murD UDP-N-acetylmura 96.6 0.0024 5.1E-08 56.0 3.9 33 15-47 2-35 (459)
425 PF00890 FAD_binding_2: FAD bi 96.5 0.039 8.4E-07 47.8 10.9 56 181-236 143-204 (417)
426 PF13434 K_oxygenase: L-lysine 96.5 0.0058 1.2E-07 51.2 5.5 100 138-238 4-162 (341)
427 TIGR01470 cysG_Nterm siroheme 96.5 0.0042 9E-08 47.9 4.3 33 13-45 9-42 (205)
428 PRK14106 murD UDP-N-acetylmura 96.4 0.023 4.9E-07 49.8 9.0 83 135-241 4-86 (450)
429 KOG4405 GDP dissociation inhib 96.4 0.0036 7.9E-08 52.1 3.6 46 12-57 7-53 (547)
430 PRK07121 hypothetical protein; 96.4 0.082 1.8E-06 46.9 12.3 62 180-241 178-246 (492)
431 PRK06719 precorrin-2 dehydroge 96.3 0.0066 1.4E-07 44.6 4.5 33 12-44 12-45 (157)
432 TIGR03862 flavo_PP4765 unchara 96.3 0.019 4.1E-07 48.6 7.6 56 178-235 85-141 (376)
433 PRK09231 fumarate reductase fl 96.3 0.069 1.5E-06 48.3 11.4 54 181-234 135-195 (582)
434 PF02737 3HCDH_N: 3-hydroxyacy 96.3 0.0048 1E-07 46.6 3.5 32 15-46 1-33 (180)
435 TIGR01176 fum_red_Fp fumarate 96.2 0.087 1.9E-06 47.6 11.7 54 181-234 134-194 (580)
436 PRK08275 putative oxidoreducta 96.2 0.12 2.6E-06 46.6 12.4 56 180-235 138-200 (554)
437 TIGR02352 thiamin_ThiO glycine 96.1 0.018 3.9E-07 48.1 6.6 57 178-235 136-193 (337)
438 PRK06249 2-dehydropantoate 2-r 96.1 0.0078 1.7E-07 49.9 4.2 33 13-45 5-38 (313)
439 PRK06718 precorrin-2 dehydroge 96.1 0.0093 2E-07 45.9 4.3 33 12-44 9-42 (202)
440 PRK14106 murD UDP-N-acetylmura 96.1 0.0076 1.6E-07 52.7 4.4 33 13-45 5-38 (450)
441 COG0029 NadB Aspartate oxidase 96.1 0.065 1.4E-06 46.2 9.5 54 180-233 134-194 (518)
442 KOG2614 Kynurenine 3-monooxyge 96.1 0.033 7.2E-07 46.7 7.7 35 136-172 2-36 (420)
443 PF03721 UDPG_MGDP_dh_N: UDP-g 96.1 0.0041 8.8E-08 47.1 2.3 33 14-46 1-34 (185)
444 PRK06854 adenylylsulfate reduc 96.0 0.13 2.8E-06 46.9 12.1 54 181-234 134-194 (608)
445 PRK07819 3-hydroxybutyryl-CoA 96.0 0.0084 1.8E-07 48.9 3.8 34 13-46 5-39 (286)
446 PRK07573 sdhA succinate dehydr 95.9 0.11 2.4E-06 47.6 11.2 52 183-234 174-231 (640)
447 PF02558 ApbA: Ketopantoate re 95.9 0.0093 2E-07 43.6 3.5 30 16-45 1-31 (151)
448 PF10100 DUF2338: Uncharacteri 95.9 0.027 5.8E-07 47.1 6.3 99 137-244 2-104 (429)
449 PRK06452 sdhA succinate dehydr 95.8 0.15 3.3E-06 46.0 11.4 54 180-233 137-196 (566)
450 PRK04148 hypothetical protein; 95.8 0.0079 1.7E-07 42.5 2.6 33 13-46 17-50 (134)
451 PF01262 AlaDh_PNT_C: Alanine 95.8 0.011 2.4E-07 44.1 3.6 34 12-45 19-53 (168)
452 COG1206 Gid NAD(FAD)-utilizing 95.8 0.009 1.9E-07 48.5 3.1 34 13-46 3-37 (439)
453 PRK05708 2-dehydropantoate 2-r 95.8 0.012 2.7E-07 48.5 4.0 33 13-45 2-35 (305)
454 PTZ00367 squalene epoxidase; P 95.8 0.14 3.1E-06 46.0 10.9 34 136-171 33-66 (567)
455 PRK06129 3-hydroxyacyl-CoA deh 95.7 0.011 2.5E-07 48.8 3.5 33 14-46 3-36 (308)
456 TIGR03376 glycerol3P_DH glycer 95.6 0.12 2.5E-06 43.4 9.2 62 136-206 138-199 (342)
457 KOG0405 Pyridine nucleotide-di 95.6 0.11 2.4E-06 42.8 8.7 74 181-259 112-187 (478)
458 PF01488 Shikimate_DH: Shikima 95.6 0.02 4.4E-07 40.9 4.2 34 12-45 11-46 (135)
459 TIGR00518 alaDH alanine dehydr 95.6 0.016 3.6E-07 49.0 4.1 33 13-45 167-200 (370)
460 KOG2311 NAD/FAD-utilizing prot 95.6 0.064 1.4E-06 46.0 7.4 32 135-168 27-58 (679)
461 PRK09424 pntA NAD(P) transhydr 95.5 0.012 2.6E-07 51.7 3.3 35 12-46 164-199 (509)
462 TIGR01470 cysG_Nterm siroheme 95.5 0.074 1.6E-06 41.1 7.2 79 135-240 8-87 (205)
463 PF01593 Amino_oxidase: Flavin 95.5 0.0084 1.8E-07 51.8 2.3 54 181-234 211-264 (450)
464 PRK08229 2-dehydropantoate 2-r 95.5 0.017 3.6E-07 48.6 3.9 33 13-45 2-35 (341)
465 cd01080 NAD_bind_m-THF_DH_Cycl 95.5 0.024 5.3E-07 42.1 4.3 33 12-44 43-77 (168)
466 TIGR01811 sdhA_Bsu succinate d 95.4 0.21 4.6E-06 45.4 10.9 42 192-233 146-194 (603)
467 PRK06522 2-dehydropantoate 2-r 95.3 0.019 4.2E-07 47.3 3.8 31 15-45 2-33 (304)
468 PRK07530 3-hydroxybutyryl-CoA 95.3 0.021 4.5E-07 46.9 3.9 34 13-46 4-38 (292)
469 PRK09260 3-hydroxybutyryl-CoA 95.3 0.019 4.1E-07 47.0 3.6 33 14-46 2-35 (288)
470 PRK07066 3-hydroxybutyryl-CoA 95.3 0.023 5E-07 47.0 4.1 34 13-46 7-41 (321)
471 PRK08293 3-hydroxybutyryl-CoA 95.3 0.02 4.3E-07 46.9 3.7 33 14-46 4-37 (287)
472 KOG3923 D-aspartate oxidase [A 95.3 0.018 3.9E-07 46.1 3.1 35 12-46 2-44 (342)
473 cd00401 AdoHcyase S-adenosyl-L 95.2 0.024 5.3E-07 48.4 4.1 35 12-46 201-236 (413)
474 COG0240 GpsA Glycerol-3-phosph 95.2 0.13 2.8E-06 42.3 7.9 34 14-47 2-36 (329)
475 PF13478 XdhC_C: XdhC Rossmann 95.2 0.016 3.5E-07 41.4 2.5 31 16-46 1-32 (136)
476 PRK12921 2-dehydropantoate 2-r 95.2 0.024 5.2E-07 46.8 3.8 29 15-43 2-31 (305)
477 COG0686 Ald Alanine dehydrogen 95.1 0.02 4.4E-07 46.1 2.9 33 13-45 168-201 (371)
478 PF13450 NAD_binding_8: NAD(P) 95.1 0.064 1.4E-06 33.2 4.6 32 141-174 1-32 (68)
479 PRK06718 precorrin-2 dehydroge 95.0 0.11 2.4E-06 40.0 6.8 33 135-169 9-41 (202)
480 PRK06130 3-hydroxybutyryl-CoA 95.0 0.033 7.1E-07 46.2 4.1 34 13-46 4-38 (311)
481 cd05292 LDH_2 A subgroup of L- 94.9 0.031 6.8E-07 46.1 3.9 33 14-46 1-36 (308)
482 PRK08071 L-aspartate oxidase; 94.9 0.3 6.5E-06 43.5 10.2 54 181-235 132-190 (510)
483 COG2081 Predicted flavoprotein 94.9 0.12 2.5E-06 43.5 6.8 63 137-201 4-100 (408)
484 PRK06035 3-hydroxyacyl-CoA deh 94.9 0.03 6.4E-07 45.9 3.5 33 14-46 4-37 (291)
485 PRK01368 murD UDP-N-acetylmura 94.8 0.04 8.7E-07 48.2 4.4 33 13-45 6-38 (454)
486 PF01593 Amino_oxidase: Flavin 94.8 0.038 8.1E-07 47.7 4.2 33 23-55 1-34 (450)
487 TIGR02354 thiF_fam2 thiamine b 94.7 0.047 1E-06 41.9 4.1 34 12-45 20-55 (200)
488 PRK03369 murD UDP-N-acetylmura 94.7 0.039 8.4E-07 48.8 4.0 33 13-45 12-45 (488)
489 PRK02472 murD UDP-N-acetylmura 94.7 0.042 9.2E-07 48.0 4.3 33 13-45 5-38 (447)
490 PRK08306 dipicolinate synthase 94.7 0.044 9.5E-07 45.0 4.1 34 12-45 151-185 (296)
491 PRK05808 3-hydroxybutyryl-CoA 94.7 0.039 8.4E-07 45.0 3.7 33 14-46 4-37 (282)
492 PF02254 TrkA_N: TrkA-N domain 94.7 0.032 7E-07 38.6 2.8 31 16-46 1-32 (116)
493 PRK01710 murD UDP-N-acetylmura 94.6 0.042 9.1E-07 48.2 4.1 33 13-45 14-47 (458)
494 PF13241 NAD_binding_7: Putati 94.6 0.37 8.1E-06 32.6 7.8 34 135-170 6-39 (103)
495 PRK14618 NAD(P)H-dependent gly 94.5 0.053 1.1E-06 45.3 4.3 34 13-46 4-38 (328)
496 PF00899 ThiF: ThiF family; I 94.5 0.051 1.1E-06 38.9 3.7 34 13-46 2-37 (135)
497 PRK15057 UDP-glucose 6-dehydro 94.5 0.042 9.1E-07 46.9 3.7 32 15-46 2-33 (388)
498 TIGR00936 ahcY adenosylhomocys 94.5 0.053 1.2E-06 46.3 4.2 35 12-46 194-229 (406)
499 PLN02545 3-hydroxybutyryl-CoA 94.5 0.05 1.1E-06 44.7 3.9 34 13-46 4-38 (295)
500 PRK14620 NAD(P)H-dependent gly 94.5 0.04 8.6E-07 46.0 3.4 31 15-45 2-33 (326)
No 1
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.5e-39 Score=272.59 Aligned_cols=272 Identities=24% Similarity=0.310 Sum_probs=212.0
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh--------------hcC-C--------c---ccc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA--------------MVE-P--------S---FGK 64 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~--------------~~~-~--------~---~~~ 64 (290)
.+||++||||||+|..+|.++++ |.+|.++|+...+|+.+..... ... . . +..
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 46999999999999999999986 8889999999655543221100 000 0 0 000
Q ss_pred ccccccc------------ccc--ccceEEeeeeeeeecceEEecC--ceEEeccEEEEccCCCCCCCC---chHHHHHH
Q 022896 65 RSVINHT------------DYL--VNGRIVASPAINITENEVLTAE--GRRVVYDYLVIATGHKDPVPK---TRTERLNQ 125 (290)
Q Consensus 65 ~~~~~~~------------~~~--~~~~~~~~~v~~~~~~~v~~~~--~~~~~~~~vi~a~G~~~~~p~---~~~~~~~~ 125 (290)
..+.... .++ .+++++.+...+.++.++...+ ...++++++|+|||++|..|+ .....+..
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~~ 162 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILD 162 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCeEEe
Confidence 0000000 011 1468899999999988877766 478999999999999987765 33333333
Q ss_pred HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 126 ~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
..........+++++|||+|+.|+|+|..+.. .+.+||++++.+++++.+++++.+.+.+.+++.|++++.++.++.+
T Consensus 163 s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~--LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~ 240 (454)
T COG1249 163 SSDALFLLELPKSLVIVGGGYIGLEFASVFAA--LGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAV 240 (454)
T ss_pred chhhcccccCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEE
Confidence 43433334779999999999999999999996 7999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeEEcCCCc--EEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896 206 SVSEGSDTYLTSTGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS 283 (290)
Q Consensus 206 ~~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~ 283 (290)
+..++++.+.+.+|+ ++++|.+++|+|.+||.+-|.-...+++++++|+|.|| +++++|.|||||+|||++.+..+|
T Consensus 241 ~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah 319 (454)
T COG1249 241 EKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAH 319 (454)
T ss_pred EecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHh
Confidence 887776777777775 79999999999999999966666666688999999999 555558999999999988887666
Q ss_pred CCC
Q 022896 284 MIF 286 (290)
Q Consensus 284 ~~~ 286 (290)
.+.
T Consensus 320 ~A~ 322 (454)
T COG1249 320 VAM 322 (454)
T ss_pred HHH
Confidence 544
No 2
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=7.8e-39 Score=277.27 Aligned_cols=269 Identities=24% Similarity=0.292 Sum_probs=202.7
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhc--------------C--Ccc---------ccc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMV--------------E--PSF---------GKR 65 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~--------------~--~~~---------~~~ 65 (290)
.+|||+||||||+|+++|++|++ |++|+|||+++.+|+.+....... . ..+ ...
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA 83 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence 36999999999999999999986 999999999877776542211000 0 000 000
Q ss_pred cccc------------ccccc--ccceEEeeeeeeeecce--EEecCce--EEeccEEEEccCCCCCCCC---chHHHHH
Q 022896 66 SVIN------------HTDYL--VNGRIVASPAINITENE--VLTAEGR--RVVYDYLVIATGHKDPVPK---TRTERLN 124 (290)
Q Consensus 66 ~~~~------------~~~~~--~~~~~~~~~v~~~~~~~--v~~~~~~--~~~~~~vi~a~G~~~~~p~---~~~~~~~ 124 (290)
.+.. +..++ .+++++.+.+..++.+. +...++. .+.||++|+|||+.|..|+ .....+.
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~v~ 163 (461)
T PRK05249 84 DLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIY 163 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCeEE
Confidence 0000 00111 14577788888888775 3344453 7899999999999987665 2222222
Q ss_pred HHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEee
Q 022896 125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 204 (290)
Q Consensus 125 ~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~ 204 (290)
+..........+++++|+|+|.+|+|+|..+.. .+.+|+++++.+.+++.+++++...+.+.+++.|++++.++.+++
T Consensus 164 ~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~ 241 (461)
T PRK05249 164 DSDSILSLDHLPRSLIIYGAGVIGCEYASIFAA--LGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEK 241 (461)
T ss_pred cHHHhhchhhcCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEE
Confidence 333333334468999999999999999999986 589999999999999889999999999999999999999999999
Q ss_pred cccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896 205 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS 283 (290)
Q Consensus 205 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~ 283 (290)
++.+++++.+.+.+|+++++|.+++|+|.+|+.+++.....++.++++|++.||+++|+ +.|+|||+|||++.+...+
T Consensus 242 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~~~~~~ 319 (461)
T PRK05249 242 VEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGFPSLAS 319 (461)
T ss_pred EEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCCcccHh
Confidence 88766666677777888999999999999999887544444456778899999999998 7999999999998665443
No 3
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=7.3e-39 Score=276.31 Aligned_cols=265 Identities=22% Similarity=0.268 Sum_probs=199.2
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh------------------hh-----hcCCc---cccc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL------------------RA-----MVEPS---FGKR 65 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~------------------~~-----~~~~~---~~~~ 65 (290)
+||++||||||+|++||.+|++ |++|+|||++ .+|+.+... .. .+... ....
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 6999999999999999999986 9999999996 445432110 00 00000 0000
Q ss_pred ccc--------c----ccccc--ccceEEeeeeeeeecceEEecCceEEeccEEEEccCCCCCCCCchH-HHHHHHHHHH
Q 022896 66 SVI--------N----HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT-ERLNQYQAEN 130 (290)
Q Consensus 66 ~~~--------~----~~~~~--~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~-~~~~~~~~~~ 130 (290)
.+. . +...+ .+++++.+.+..+++.++.+ ++.++.||++|+|||++|..|+... ..........
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~ 161 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPSIPDIPGAEYGITSDGFF 161 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCcceeEchhHhh
Confidence 000 0 00111 24678888888888887777 6778999999999999987665221 1111122222
Q ss_pred HHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCC
Q 022896 131 QKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG 210 (290)
Q Consensus 131 ~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~ 210 (290)
.....+++++|+|+|.+|+|+|..+.. .+.+|+++++.+.+++.+++++...+.+.+++.|++++.++.|++++.+++
T Consensus 162 ~~~~~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~ 239 (450)
T PRK06116 162 ALEELPKRVAVVGAGYIAVEFAGVLNG--LGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNAD 239 (450)
T ss_pred CccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCC
Confidence 222357899999999999999999986 589999999998888888889999999999999999999999999976555
Q ss_pred c-eeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896 211 S-DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 282 (290)
Q Consensus 211 ~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~ 282 (290)
+ +.+.+.+|+++++|.+++|+|..|+.+.+.....+++++++|++.||+++|+ ++|||||+|||++.+...
T Consensus 240 g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~~~ 311 (450)
T PRK06116 240 GSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTGRVELT 311 (450)
T ss_pred ceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCCCcCcH
Confidence 4 6677778889999999999999999886543334446788999999999997 799999999999765443
No 4
>PLN02507 glutathione reductase
Probab=100.00 E-value=1.9e-38 Score=275.08 Aligned_cols=270 Identities=20% Similarity=0.223 Sum_probs=199.5
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCC---------CCcccchhhhhh-----h-----------------c
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK---------EYFEITWASLRA-----M-----------------V 58 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~---------~~~~~~~~~~~~-----~-----------------~ 58 (290)
..+||++||||||+|+.+|.+|++ |.+|+|||+. ..+|+.+..... . +
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 346999999999999999999986 9999999962 345544321000 0 0
Q ss_pred C-C---cccccccccc--------c----ccc--ccceEEeeeeeeeecce--EEecCce--EEeccEEEEccCCCCCCC
Q 022896 59 E-P---SFGKRSVINH--------T----DYL--VNGRIVASPAINITENE--VLTAEGR--RVVYDYLVIATGHKDPVP 116 (290)
Q Consensus 59 ~-~---~~~~~~~~~~--------~----~~~--~~~~~~~~~v~~~~~~~--v~~~~~~--~~~~~~vi~a~G~~~~~p 116 (290)
. . .+....+... . ..+ .+++++.+.+..++++. +...++. .+.||+||+|||++|..|
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~p 182 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRP 182 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCCC
Confidence 0 0 0000000000 0 111 24678899999999884 4445654 588999999999997655
Q ss_pred CchH-HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcE
Q 022896 117 KTRT-ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD 195 (290)
Q Consensus 117 ~~~~-~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 195 (290)
+..+ ....+..........+++++|+|+|..|+|+|..+.. .+.+|+++++.+.+++.+++++...+.+.+++.||+
T Consensus 183 ~ipG~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~ 260 (499)
T PLN02507 183 NIPGKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRG--MGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGIN 260 (499)
T ss_pred CCCCccceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCE
Confidence 4211 1111222222223357899999999999999999986 589999999998888888899999999999999999
Q ss_pred EEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccc
Q 022896 196 VKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI 275 (290)
Q Consensus 196 ~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~ 275 (290)
++.++.|++++.+++++.+.+.+|+++++|.+++++|.+|+.+++.....+++++++|++.||+++|+ +.|||||+|||
T Consensus 261 i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv 339 (499)
T PLN02507 261 LHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGDV 339 (499)
T ss_pred EEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEeeEc
Confidence 99999999988666667777778888999999999999999887543333446678899999999998 89999999999
Q ss_pred cCcccccc
Q 022896 276 TDIRVSAS 283 (290)
Q Consensus 276 ~~~~~~~~ 283 (290)
++.+...+
T Consensus 340 ~~~~~l~~ 347 (499)
T PLN02507 340 TNRINLTP 347 (499)
T ss_pred CCCCccHH
Confidence 98665444
No 5
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=1.5e-38 Score=273.57 Aligned_cols=267 Identities=21% Similarity=0.209 Sum_probs=198.1
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hcCC---cccc--
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MVEP---SFGK-- 64 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~~~---~~~~-- 64 (290)
+||++||||||+|++||.++++ |++|+|+|++ .+|+.+..... .+.. .+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 5999999999999999999986 9999999996 45544221000 0000 0000
Q ss_pred ------ccccccc----ccc--ccceEEeeeeeeeecceEEe-cCceEEeccEEEEccCCCCCCCCchHH-HHHHHHHHH
Q 022896 65 ------RSVINHT----DYL--VNGRIVASPAINITENEVLT-AEGRRVVYDYLVIATGHKDPVPKTRTE-RLNQYQAEN 130 (290)
Q Consensus 65 ------~~~~~~~----~~~--~~~~~~~~~v~~~~~~~v~~-~~~~~~~~~~vi~a~G~~~~~p~~~~~-~~~~~~~~~ 130 (290)
.....+. ..+ .+++++.+.+..++++++.. .++..+.||++|+|||++|..|+..+. .........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~~~~~~~~~ 160 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGITSNEAF 160 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCccceechHHhh
Confidence 0000111 111 14678888888888875443 456789999999999999766542211 111112222
Q ss_pred HHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCC
Q 022896 131 QKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG 210 (290)
Q Consensus 131 ~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~ 210 (290)
.....+++++|+|+|..|+|+|..+.. .+.+|+++++.+.+++.+++++...+.+.++++|++++.++.+++++.+++
T Consensus 161 ~l~~~~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~ 238 (446)
T TIGR01424 161 HLPTLPKSILILGGGYIAVEFAGIWRG--LGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDD 238 (446)
T ss_pred cccccCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC
Confidence 222357899999999999999999986 588999999999888888889999999999999999999999998876666
Q ss_pred ceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896 211 SDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS 283 (290)
Q Consensus 211 ~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~ 283 (290)
+..+.+.+|+++++|.+++|+|..|+.+.+.....+++++++|++.||+++|+ ++|||||+|||++.+...+
T Consensus 239 ~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~l~~ 310 (446)
T TIGR01424 239 GLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTDRINLTP 310 (446)
T ss_pred eEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCCCccchh
Confidence 66677778888999999999999999876543334446788899999999998 7999999999998655444
No 6
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=2.4e-38 Score=272.45 Aligned_cols=269 Identities=22% Similarity=0.255 Sum_probs=199.9
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC-cccchhhhhhhc----------CCcccc------cccccc----
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY-FEITWASLRAMV----------EPSFGK------RSVINH---- 70 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~-~~~~~~~~~~~~----------~~~~~~------~~~~~~---- 70 (290)
.|||+||||||+|++||++|++ |++|+|||+.+. +|+.+....... ..++.. .....+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKN 82 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Confidence 5999999999999999999986 999999999763 565442111100 001100 000000
Q ss_pred -ccc--cccceEEeeeeeeeecce--EEecCce-EEeccEEEEccCCCCCCCCchH----HHHHHHHHHHHHHhcCCeEE
Q 022896 71 -TDY--LVNGRIVASPAINITENE--VLTAEGR-RVVYDYLVIATGHKDPVPKTRT----ERLNQYQAENQKIKSARSIL 140 (290)
Q Consensus 71 -~~~--~~~~~~~~~~v~~~~~~~--v~~~~~~-~~~~~~vi~a~G~~~~~p~~~~----~~~~~~~~~~~~~~~~~~v~ 140 (290)
... ..+++++.+.+..++++. +...++. ++.||++|+|||++|..|+..+ ..+.+..........+++++
T Consensus 83 ~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~v~ 162 (441)
T PRK08010 83 FHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLG 162 (441)
T ss_pred HHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCCCEEChhHhhcccccCCeEE
Confidence 011 125678888888888774 3445564 6999999999999976554111 11222233333334578999
Q ss_pred EEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCc
Q 022896 141 IVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD 220 (290)
Q Consensus 141 iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~ 220 (290)
|+|+|..|+|+|..+.. .+.+|+++++.+.+++.+++++...+.+.+++.||+++.++.+++++.+++.+.+.+.++
T Consensus 163 ViGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g- 239 (441)
T PRK08010 163 ILGGGYIGVEFASMFAN--FGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA- 239 (441)
T ss_pred EECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-
Confidence 99999999999999986 589999999999888888888999999999999999999999998887665566665555
Q ss_pred EEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccccCC
Q 022896 221 TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMI 285 (290)
Q Consensus 221 ~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~~~ 285 (290)
++++|.+++|+|.+|+.+++.....+++++++|++.||+++|+ ++|||||+|||++.+...+.+
T Consensus 240 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~~~~~a 303 (441)
T PRK08010 240 QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHT-TADNIWAMGDVTGGLQFTYIS 303 (441)
T ss_pred eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCccchhHH
Confidence 5899999999999999887654444456778899999999998 799999999999977655543
No 7
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=4e-37 Score=253.03 Aligned_cols=264 Identities=31% Similarity=0.437 Sum_probs=205.2
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc---cceEEeeeee
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV---NGRIVASPAI 85 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~ 85 (290)
+++++||||||.+|+.+|..|.+ +.++++||+++++...+.............+...++...++ +++++.++|+
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~ 81 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVT 81 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEE
Confidence 36899999999999999999975 38999999999887665544444333333344444444443 4788999999
Q ss_pred eeecc--eEEecCceEEeccEEEEccCCCCC---CCC-----chHHHHHHHHHHHHHH-------h------cCCeEEEE
Q 022896 86 NITEN--EVLTAEGRRVVYDYLVIATGHKDP---VPK-----TRTERLNQYQAENQKI-------K------SARSILIV 142 (290)
Q Consensus 86 ~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~---~p~-----~~~~~~~~~~~~~~~~-------~------~~~~v~ii 142 (290)
.+|.+ +|.+.++..+.||++|+|+|+.+. +|+ .....+++...+...+ . .-..++|+
T Consensus 82 ~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~Iv 161 (405)
T COG1252 82 DIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIV 161 (405)
T ss_pred EEcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEE
Confidence 99987 688888788999999999999954 444 1122222222222111 1 12369999
Q ss_pred cCchhHHHHHHHHhhhCC-----------CCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc
Q 022896 143 GGGPTGVELAGEIAVDFP-----------EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS 211 (290)
Q Consensus 143 G~g~~~~~~a~~l~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~ 211 (290)
|+|++|.|+|.+|.++.. ..+|+++++.+++++.+++++.....+.|++.||+++.++.|++++.+.
T Consensus 162 GgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~-- 239 (405)
T COG1252 162 GGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG-- 239 (405)
T ss_pred CCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc--
Confidence 999999999999986421 2389999999999999999999999999999999999999998776543
Q ss_pred eeEEcCCCc-EEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896 212 DTYLTSTGD-TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 281 (290)
Q Consensus 212 ~~v~~~~g~-~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~ 281 (290)
+.+.+|+ +|+++.+||++|.++ .+++++. .+.+.+..|++.||+++|..++|+||++|||+..+..
T Consensus 240 --v~~~~g~~~I~~~tvvWaaGv~a-~~~~~~l-~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~ 306 (405)
T COG1252 240 --VTLKDGEEEIPADTVVWAAGVRA-SPLLKDL-SGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP 306 (405)
T ss_pred --EEEccCCeeEecCEEEEcCCCcC-Chhhhhc-ChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC
Confidence 5666776 599999999999998 5677763 2246678899999999999999999999999998764
No 8
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=5e-38 Score=269.98 Aligned_cols=266 Identities=19% Similarity=0.185 Sum_probs=195.3
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hcCCc----cccc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MVEPS----FGKR 65 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~~~~----~~~~ 65 (290)
+|||+||||||+|++||..|++ |++|+|||++. +|+.+..... .+... ....
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 5999999999999999999986 99999999965 4543211000 00000 0000
Q ss_pred cccc------------ccccc--ccceEEeeeeeeeecceEEecCceEEeccEEEEccCCCCCCC-CchHH-HHHHHHHH
Q 022896 66 SVIN------------HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP-KTRTE-RLNQYQAE 129 (290)
Q Consensus 66 ~~~~------------~~~~~--~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p-~~~~~-~~~~~~~~ 129 (290)
.+.. +...+ .+++++.+.....+...+.. ++..+.||++|+|||++|..| +.... ...+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~~~~~~~~~ 159 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAELGTDSDGF 159 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCceeEcHHHh
Confidence 0000 11111 14567777766666666655 556799999999999998766 32111 11111222
Q ss_pred HHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCC
Q 022896 130 NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE 209 (290)
Q Consensus 130 ~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~ 209 (290)
......+++++|||+|.+|+|+|..+.. .+.+|+++++.+.+++.+++++.+.+.+.+++.||+++.++.+++++.++
T Consensus 160 ~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~ 237 (450)
T TIGR01421 160 FALEELPKRVVIVGAGYIAVELAGVLHG--LGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTV 237 (450)
T ss_pred hCccccCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeC
Confidence 2222347899999999999999999986 58999999999998888999999999999999999999999999887654
Q ss_pred Cc-eeEEcCCC-cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896 210 GS-DTYLTSTG-DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS 283 (290)
Q Consensus 210 ~~-~~v~~~~g-~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~ 283 (290)
++ ..+.+.+| +.+++|.|++|+|..|+.+++....++++++++|++.||+++|| ++|+|||+|||++.+...+
T Consensus 238 ~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~~~~~~~ 312 (450)
T TIGR01421 238 EGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVGKVELTP 312 (450)
T ss_pred CceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCCCcccHH
Confidence 43 56666677 57999999999999999987654445557788999999999998 7999999999998765443
No 9
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=6.1e-37 Score=261.77 Aligned_cols=262 Identities=26% Similarity=0.329 Sum_probs=196.4
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEeeeeeee
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINI 87 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~ 87 (290)
..+++|||||||.+|+++|..|.+ +++|+|||+++++.+.+.................++...+. +..++.+.|+.+
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~I 87 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYDV 87 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEEEE
Confidence 346899999999999999999976 79999999999876544332222222111222223333222 467899999999
Q ss_pred ecc--eEEe----------cCceEEeccEEEEccCCCCC---CCCchH-----HHHHHHHHHHHHH--------------
Q 022896 88 TEN--EVLT----------AEGRRVVYDYLVIATGHKDP---VPKTRT-----ERLNQYQAENQKI-------------- 133 (290)
Q Consensus 88 ~~~--~v~~----------~~~~~~~~~~vi~a~G~~~~---~p~~~~-----~~~~~~~~~~~~~-------------- 133 (290)
+++ .+.+ .++.++.||+||+|||+.+. +|+... ..+.+.....+.+
T Consensus 88 d~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~ 167 (424)
T PTZ00318 88 DFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSV 167 (424)
T ss_pred EcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCh
Confidence 976 4555 45678999999999999964 444211 1122222111111
Q ss_pred ---hcCCeEEEEcCchhHHHHHHHHhhhC------------CCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEe
Q 022896 134 ---KSARSILIVGGGPTGVELAGEIAVDF------------PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL 198 (290)
Q Consensus 134 ---~~~~~v~iiG~g~~~~~~a~~l~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~ 198 (290)
...++++|+|+|.+|+|+|..|.+.. .+.+|+++++.+.+++.+++.+.+.+.+.++++||+++.
T Consensus 168 ~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~ 247 (424)
T PTZ00318 168 EERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRT 247 (424)
T ss_pred HHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEe
Confidence 12258999999999999999987631 368899999999888888889999999999999999999
Q ss_pred CceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCc
Q 022896 199 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 278 (290)
Q Consensus 199 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~ 278 (290)
++.|+++..+ .+.+.+|+++++|.+|+++|.+|+ +++...++ +++++|++.||+++|++++|||||+|||+..
T Consensus 248 ~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l--~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~ 320 (424)
T PTZ00318 248 KTAVKEVLDK----EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKV--DKTSRGRISVDDHLRVKPIPNVFALGDCAAN 320 (424)
T ss_pred CCeEEEEeCC----EEEECCCCEEEccEEEEccCCCCc-chhhhcCC--cccCCCcEEeCCCcccCCCCCEEEEeccccC
Confidence 9999877532 356778889999999999999986 57777655 5678899999999997789999999999986
Q ss_pred c
Q 022896 279 R 279 (290)
Q Consensus 279 ~ 279 (290)
+
T Consensus 321 ~ 321 (424)
T PTZ00318 321 E 321 (424)
T ss_pred C
Confidence 4
No 10
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=4e-37 Score=264.31 Aligned_cols=266 Identities=23% Similarity=0.318 Sum_probs=198.4
Q ss_pred CCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCCcccchh-------h-----------hh----hhcC-C----ccc--
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWA-------S-----------LR----AMVE-P----SFG-- 63 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~~~~~~~-------~-----------~~----~~~~-~----~~~-- 63 (290)
+||++||||||+|.+||..+ .|.+|+|+|++.. |+.+. . .. ..+. . ++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~~-GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGTF-GGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI 78 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCCC-CCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence 38999999999999999774 4999999999753 32110 0 00 0011 0 000
Q ss_pred ----cccccc-----cccc-c--ccceEEeeeeeeeecceEEecCceEEeccEEEEccCCCCCCCCch---HHHHHHHHH
Q 022896 64 ----KRSVIN-----HTDY-L--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR---TERLNQYQA 128 (290)
Q Consensus 64 ----~~~~~~-----~~~~-~--~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~~~---~~~~~~~~~ 128 (290)
...... ...+ + .+++++.+.+..++++++.+.++..+.||++|+|||++|..|+.. ...+.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~ 158 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDT 158 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCCCCCCCCcCCccEEchHH
Confidence 000000 0111 1 356788899888888888888777899999999999998766522 111222233
Q ss_pred HHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccC
Q 022896 129 ENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS 208 (290)
Q Consensus 129 ~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~ 208 (290)
.......+++++|+|+|+.|+|+|..+.. .+.+|+++++.+.+++.+++++...+.+.+ +.|++++.++.+++++.+
T Consensus 159 ~~~l~~~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~ 235 (451)
T PRK07846 159 IMRLPELPESLVIVGGGFIAAEFAHVFSA--LGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQD 235 (451)
T ss_pred HhhhhhcCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEc
Confidence 33333457999999999999999999986 589999999999888888888887776654 568999999999988766
Q ss_pred CCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccccC
Q 022896 209 EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM 284 (290)
Q Consensus 209 ~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~~ 284 (290)
++++.+.+.+|+++++|.+++|+|.+|+.+++.....+++++++|++.||+++|+ ++|||||+|||++.+..++.
T Consensus 236 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~~~l~~~ 310 (451)
T PRK07846 236 GSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSPYQLKHV 310 (451)
T ss_pred CCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCccc-CCCCEEEEeecCCCccChhH
Confidence 6666677778889999999999999999998764445557788999999999997 79999999999987655543
No 11
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.8e-37 Score=268.64 Aligned_cols=266 Identities=22% Similarity=0.267 Sum_probs=195.8
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhc----------------------C---Cccccc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMV----------------------E---PSFGKR 65 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~----------------------~---~~~~~~ 65 (290)
..||++||||||+|++||..|++ |++|+|+|++. +|+.+....... . ..+...
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 36999999999999999999986 99999999987 665432211100 0 000000
Q ss_pred cccc------------ccccc--ccceEEeeeeeeeecceEEec--C-ceEEeccEEEEccCCCCCCCC-ch--HHHHHH
Q 022896 66 SVIN------------HTDYL--VNGRIVASPAINITENEVLTA--E-GRRVVYDYLVIATGHKDPVPK-TR--TERLNQ 125 (290)
Q Consensus 66 ~~~~------------~~~~~--~~~~~~~~~v~~~~~~~v~~~--~-~~~~~~~~vi~a~G~~~~~p~-~~--~~~~~~ 125 (290)
.+.. +...+ .+++++.+.+..++++.+... + +..+.||+||+|||++|..|+ .. ...+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~~~~~v~~ 161 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWT 161 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCCCCCeEEc
Confidence 0011 11111 246788888888887755443 2 367999999999999986543 21 111222
Q ss_pred HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 126 ~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
..........+++++|+|+|.+|+|+|..+.. .+.+|+++++.+.+++.+++++...+.+.+++.|++++.++.++++
T Consensus 162 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i 239 (462)
T PRK06416 162 SDEALNLDEVPKSLVVIGGGYIGVEFASAYAS--LGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKV 239 (462)
T ss_pred chHhhCccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 22222222356899999999999999999986 4889999999999888888899999999999999999999999999
Q ss_pred ccCCCceeEEcCCC---cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896 206 SVSEGSDTYLTSTG---DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 282 (290)
Q Consensus 206 ~~~~~~~~v~~~~g---~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~ 282 (290)
+.+++.+.+.+.+| +++++|.+++|+|.+|+.+++.....+++++ +|++.||+++|+ +.|+|||+|||+..+...
T Consensus 240 ~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t-~~~~VyAiGD~~~~~~~~ 317 (462)
T PRK06416 240 EQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRT-NVPNIYAIGDIVGGPMLA 317 (462)
T ss_pred EEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCcc-CCCCEEEeeecCCCcchH
Confidence 87666666665555 6799999999999999988763222333556 899999999997 799999999999765433
No 12
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2e-37 Score=267.72 Aligned_cols=266 Identities=17% Similarity=0.211 Sum_probs=196.3
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hcC---Ccccccc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MVE---PSFGKRS 66 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~~---~~~~~~~ 66 (290)
+||++||||||+|+++|..|++ |++|+|||+++.+|+.+..... .+. .......
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDK 83 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHH
Confidence 6999999999999999999986 9999999998766654311100 000 0000000
Q ss_pred ccccc------------ccc--ccceEEeeeeeeeecceEEe--cCc--eEEeccEEEEccCCCCC-CCCc--hHHHHHH
Q 022896 67 VINHT------------DYL--VNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDP-VPKT--RTERLNQ 125 (290)
Q Consensus 67 ~~~~~------------~~~--~~~~~~~~~v~~~~~~~v~~--~~~--~~~~~~~vi~a~G~~~~-~p~~--~~~~~~~ 125 (290)
..... ..+ .+++++.+.+..++++.+.. .++ .++.||++|+|||++|. .|.. ....+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~v~~ 163 (471)
T PRK06467 84 MRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIWD 163 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCcEEC
Confidence 00000 011 14678888888888776443 345 47899999999999985 3431 1111222
Q ss_pred HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 126 ~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
..........+++++|+|+|..|+|+|..+.. .+.+|+++++.+.+++.+++++...+.+.+++. ++++.++.++.+
T Consensus 164 ~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i 240 (471)
T PRK06467 164 STDALELKEVPKRLLVMGGGIIGLEMGTVYHR--LGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAV 240 (471)
T ss_pred hHHhhccccCCCeEEEECCCHHHHHHHHHHHH--cCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEE
Confidence 22222222456899999999999999999986 589999999999998889999999999999988 999999999988
Q ss_pred ccCCCceeEEcCC--C--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896 206 SVSEGSDTYLTST--G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 281 (290)
Q Consensus 206 ~~~~~~~~v~~~~--g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~ 281 (290)
+.+++...+.+.+ + +++++|.+++|+|..|+.+++.....+++++++|++.||+++|+ ++|+|||+|||++.+..
T Consensus 241 ~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~~~~l 319 (471)
T PRK06467 241 EAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVGQPML 319 (471)
T ss_pred EEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcCCccc
Confidence 8766665555433 2 36999999999999999987655555557788999999999998 89999999999976544
Q ss_pred c
Q 022896 282 A 282 (290)
Q Consensus 282 ~ 282 (290)
.
T Consensus 320 a 320 (471)
T PRK06467 320 A 320 (471)
T ss_pred H
Confidence 3
No 13
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=5.9e-37 Score=265.21 Aligned_cols=267 Identities=21% Similarity=0.219 Sum_probs=192.6
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hcC----Ccccc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MVE----PSFGK 64 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~~----~~~~~ 64 (290)
.+|||+||||||+|++||.+|++ |++|+|||+... |+.+..... .+. .....
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~-GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLL-GGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDF 82 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCcc-CCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCH
Confidence 36999999999999999999986 999999999753 332211100 000 00000
Q ss_pred ccc------------cccccccc---cceEEeeeeeeeecceEEecCceEEeccEEEEccCCCCCCCC---chHHHHHHH
Q 022896 65 RSV------------INHTDYLV---NGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPK---TRTERLNQY 126 (290)
Q Consensus 65 ~~~------------~~~~~~~~---~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~---~~~~~~~~~ 126 (290)
..+ ..+..+++ +++++.+....++..++.. ++.++.||++|+|||++|..|+ .....+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v-~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~~~ 161 (463)
T PRK06370 83 KAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV-GGETLRAKRIFINTGARAAIPPIPGLDEVGYLTN 161 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE-CcEEEEeCEEEEcCCCCCCCCCCCCCCcCceEcc
Confidence 000 01111221 4667777766666666666 4567999999999999977655 221112222
Q ss_pred HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896 127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS 206 (290)
Q Consensus 127 ~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~ 206 (290)
.........+++++|+|+|..|+|+|..+.. .+.+|+++++.+.+++..++++.+.+.+.+++.|++++.++.+.+++
T Consensus 162 ~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~ 239 (463)
T PRK06370 162 ETIFSLDELPEHLVIIGGGYIGLEFAQMFRR--FGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVE 239 (463)
T ss_pred hHhhCccccCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 2222222357999999999999999999986 58899999999988888888899999999999999999999999887
Q ss_pred cCCCceeEEc---CCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896 207 VSEGSDTYLT---STGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS 283 (290)
Q Consensus 207 ~~~~~~~v~~---~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~ 283 (290)
.++++..+.. .+++++++|.|++|+|.+|+.+.+.....+++++++|++.||+++|+ +.|+|||+|||++.+...+
T Consensus 240 ~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~~~~~~ 318 (463)
T PRK06370 240 RDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGRGAFTH 318 (463)
T ss_pred EcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCCCcccHH
Confidence 6655544432 23457999999999999999874322223346678899999999998 7999999999998765544
No 14
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1e-36 Score=262.11 Aligned_cols=267 Identities=18% Similarity=0.218 Sum_probs=194.6
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC-cccchhhhhhhc----------CCccccc------cccc----c
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY-FEITWASLRAMV----------EPSFGKR------SVIN----H 70 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~-~~~~~~~~~~~~----------~~~~~~~------~~~~----~ 70 (290)
+|||+||||||+|++||.+|++ |++|+|||+++. +|+.+....... ..++... ...+ .
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKN 82 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999986 999999999864 454321110000 0011000 0000 0
Q ss_pred cccc--ccceEEeeeeeeeecceEEecC---ceEEeccEEEEccCCCCCCC---Cc-hHHHHHHHHHHHHHHhcCCeEEE
Q 022896 71 TDYL--VNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATGHKDPVP---KT-RTERLNQYQAENQKIKSARSILI 141 (290)
Q Consensus 71 ~~~~--~~~~~~~~~v~~~~~~~v~~~~---~~~~~~~~vi~a~G~~~~~p---~~-~~~~~~~~~~~~~~~~~~~~v~i 141 (290)
.+.+ .+++++.+.+..++..++.... ..++.||++|+|||++|..| +. ....+.+..........+++++|
T Consensus 83 ~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~~~~~~~~~~~~~vvI 162 (438)
T PRK07251 83 YAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLETLPERLGI 162 (438)
T ss_pred HHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCCcEEchHHHhcchhcCCeEEE
Confidence 0111 2467777877777766665532 34789999999999997544 42 11222233333333346789999
Q ss_pred EcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcE
Q 022896 142 VGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDT 221 (290)
Q Consensus 142 iG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~ 221 (290)
||+|..|+|+|..+.. .+.+|+++++.+.+++..++.+...+.+.+++.|++++.++.+++++.+++.+.+.. +|++
T Consensus 163 IGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~ 239 (438)
T PRK07251 163 IGGGNIGLEFAGLYNK--LGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDET 239 (438)
T ss_pred ECCCHHHHHHHHHHHH--cCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeE
Confidence 9999999999999986 588999999999888888888888899999999999999999998876555555543 5668
Q ss_pred EeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896 222 INADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS 283 (290)
Q Consensus 222 ~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~ 283 (290)
+++|.+++|+|..|+.+.+......+.++++|++.||+++|+ +.|||||+|||++.+...+
T Consensus 240 i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t-~~~~IyaiGD~~~~~~~~~ 300 (438)
T PRK07251 240 YRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQT-SVPGVFAVGDVNGGPQFTY 300 (438)
T ss_pred EEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCcccHh
Confidence 999999999999999876554334445678899999999998 7999999999998754433
No 15
>PLN02546 glutathione reductase
Probab=100.00 E-value=1.7e-36 Score=263.96 Aligned_cols=268 Identities=18% Similarity=0.176 Sum_probs=196.4
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCC---------CCcccchhhh------------------h----hhcC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK---------EYFEITWASL------------------R----AMVE 59 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~---------~~~~~~~~~~------------------~----~~~~ 59 (290)
.+|||+||||||+|+.||..|++ |.+|+|+|+. ..+|+.+... . ..+.
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~ 157 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWK 157 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 35999999999999999999986 9999999962 2233321100 0 0000
Q ss_pred ------Cccc------ccccc----cccccc--ccceEEeeeeeeeecceEEecCceEEeccEEEEccCCCCCCCCchH-
Q 022896 60 ------PSFG------KRSVI----NHTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT- 120 (290)
Q Consensus 60 ------~~~~------~~~~~----~~~~~~--~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~- 120 (290)
.++. ..... .+...+ .+++++.+.++.++++.+.. ++..+.||++|+|||++|..|+..+
T Consensus 158 ~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v-~G~~~~~D~LVIATGs~p~~P~IpG~ 236 (558)
T PLN02546 158 YETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV-DGKLYTARNILIAVGGRPFIPDIPGI 236 (558)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE-CCEEEECCEEEEeCCCCCCCCCCCCh
Confidence 0000 00000 111112 14688899999999887766 5678999999999999977665221
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCc
Q 022896 121 ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE 200 (290)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 200 (290)
..+............+++++|||+|..|+|+|..+.. .+.+|+++++.+.+++.+++++...+.+.++++||+++.++
T Consensus 237 ~~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~--~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~ 314 (558)
T PLN02546 237 EHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNG--LKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEE 314 (558)
T ss_pred hhccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHh--cCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCC
Confidence 2222333333333467999999999999999999986 58899999999988888899999999999999999999999
Q ss_pred eEeecccCCC-ceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896 201 RVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 279 (290)
Q Consensus 201 ~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~ 279 (290)
.+.++..+++ .+.+.+.+++...+|.+++++|..|+.+++....++++++++|+|.||+++|+ ++|+|||+|||++.+
T Consensus 315 ~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~~~ 393 (558)
T PLN02546 315 SPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTDRI 393 (558)
T ss_pred EEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCCCc
Confidence 9988865433 35555555554558999999999999887533333446678899999999998 899999999999876
Q ss_pred cccc
Q 022896 280 VSAS 283 (290)
Q Consensus 280 ~~~~ 283 (290)
...+
T Consensus 394 ~l~~ 397 (558)
T PLN02546 394 NLTP 397 (558)
T ss_pred ccHH
Confidence 5544
No 16
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=252.29 Aligned_cols=261 Identities=20% Similarity=0.288 Sum_probs=194.3
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCCCcccchhhh-hhhcCCcccccccccccccc--ccceEEee-eee
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASL-RAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAI 85 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~v~ 85 (290)
..+|+|||||+||++||..|++ + .+|+|++++..+.+....+ .................+++ .++++..+ .|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 4689999999999999999975 4 5899999998765432212 11111111111111111222 24566644 677
Q ss_pred eeecc--eEEecCceEEeccEEEEccCCCCCCCC---c------hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHH
Q 022896 86 NITEN--EVLTAEGRRVVYDYLVIATGHKDPVPK---T------RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGE 154 (290)
Q Consensus 86 ~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~---~------~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~ 154 (290)
.+++. .+.+.++..+.||+||+|||++|..++ . ....+.+...+...+..+++++|+|+|..|+|+|..
T Consensus 83 ~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~ 162 (396)
T PRK09754 83 TLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAAS 162 (396)
T ss_pred EEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence 88775 577778889999999999999975432 1 111233444444555678999999999999999999
Q ss_pred HhhhCCCCeEEEEecCcccccc-CChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896 155 IAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 233 (290)
Q Consensus 155 l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 233 (290)
+.. .+.+|+++++.+.++.. +++.....+.+.++++||+++.++.+++++. ++...+.+.+|+++++|.+++++|.
T Consensus 163 l~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 163 ATQ--RRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred HHH--cCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC
Confidence 986 48899999998887654 5677888899999999999999999988865 4446677788989999999999999
Q ss_pred CCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896 234 PVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 281 (290)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~ 281 (290)
+|+..++...++. .++.+.||+++|+ +.|||||+|||+..+..
T Consensus 240 ~pn~~l~~~~gl~----~~~gi~vd~~~~t-s~~~IyA~GD~a~~~~~ 282 (396)
T PRK09754 240 SANDQLAREANLD----TANGIVIDEACRT-CDPAIFAGGDVAITRLD 282 (396)
T ss_pred ChhhHHHHhcCCC----cCCCEEECCCCcc-CCCCEEEccceEeeeCC
Confidence 9998888776653 2456999999998 79999999999976554
No 17
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=1e-35 Score=255.30 Aligned_cols=257 Identities=17% Similarity=0.290 Sum_probs=193.8
Q ss_pred CcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCccc-cccccc--ccccc--ccceE-Eeeee
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVIN--HTDYL--VNGRI-VASPA 84 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~--~~~~~-~~~~v 84 (290)
++|+|||||++|++||..|++ +++|+|||+++.+.+....+......... ...... ...+. .++++ ..+.|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 589999999999999999964 68999999998776554333222221111 111111 11221 24555 35789
Q ss_pred eeeecc--eEEecCc-----eEEeccEEEEccCCCCCCCCch------HHHHHHHHHHHHHH--hcCCeEEEEcCchhHH
Q 022896 85 INITEN--EVLTAEG-----RRVVYDYLVIATGHKDPVPKTR------TERLNQYQAENQKI--KSARSILIVGGGPTGV 149 (290)
Q Consensus 85 ~~~~~~--~v~~~~~-----~~~~~~~vi~a~G~~~~~p~~~------~~~~~~~~~~~~~~--~~~~~v~iiG~g~~~~ 149 (290)
..++++ .+.+.++ .++.||++|+|||++|..|+.. ...+.+.....+.+ ..+++++|+|+|..|+
T Consensus 82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~ 161 (438)
T PRK13512 82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISL 161 (438)
T ss_pred EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHH
Confidence 999876 4544332 2478999999999998877622 12233333333322 2468999999999999
Q ss_pred HHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEE
Q 022896 150 ELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFL 229 (290)
Q Consensus 150 ~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~ 229 (290)
|+|..+.. .+.+|+++++.+.+++.+++++...+.+.+++.||+++.++.+++++. . .+.+.+|+++++|.+++
T Consensus 162 E~A~~l~~--~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~ 235 (438)
T PRK13512 162 EVLENLYE--RGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIE 235 (438)
T ss_pred HHHHHHHh--CCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEE
Confidence 99999986 588999999999888888889999999999999999999999988753 2 45566788899999999
Q ss_pred ccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896 230 CTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 279 (290)
Q Consensus 230 a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~ 279 (290)
|+|.+|+.++++..++ +++++|++.||+++|+ ++|+|||+|||+..+
T Consensus 236 a~G~~pn~~~l~~~gl--~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~ 282 (438)
T PRK13512 236 GVGTHPNSKFIESSNI--KLDDKGFIPVNDKFET-NVPNIYAIGDIITSH 282 (438)
T ss_pred CcCCCcChHHHHhcCc--ccCCCCcEEECCCccc-CCCCEEEeeeeEEee
Confidence 9999999999887765 5577899999999997 799999999998743
No 18
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=1e-36 Score=263.92 Aligned_cols=265 Identities=24% Similarity=0.284 Sum_probs=193.4
Q ss_pred CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh--------------hhhcC------------Cccc---
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL--------------RAMVE------------PSFG--- 63 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~--------------~~~~~------------~~~~--- 63 (290)
||++||||||+|++||.+|++ |.+|+|||++. +|+.|... ..... .++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 699999999999999999986 99999999976 45443210 00000 0000
Q ss_pred ---cccccc-----cccccc--cceEEeeeeeeeecceEEecCc-eEEeccEEEEccCCCCCCCC---chHHHHHHHHHH
Q 022896 64 ---KRSVIN-----HTDYLV--NGRIVASPAINITENEVLTAEG-RRVVYDYLVIATGHKDPVPK---TRTERLNQYQAE 129 (290)
Q Consensus 64 ---~~~~~~-----~~~~~~--~~~~~~~~v~~~~~~~v~~~~~-~~~~~~~vi~a~G~~~~~p~---~~~~~~~~~~~~ 129 (290)
.+.... +...+. +++++.+.+...+..++...++ ..+.+|++|+|||+.|..|+ .....+.+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~~~~~~~~ 159 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEA 159 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCceECchhh
Confidence 000000 111121 4577888888888777777665 36899999999999976554 221112222222
Q ss_pred HHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCC
Q 022896 130 NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE 209 (290)
Q Consensus 130 ~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~ 209 (290)
......+++++|||+|.+|+|+|..+.. .+.+|+++++.+.+++.+++++...+.+.+++.||+++.++.|++++.++
T Consensus 160 ~~~~~~~~~vvIIGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~ 237 (463)
T TIGR02053 160 LALDRIPESLAVIGGGAIGVELAQAFAR--LGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRG 237 (463)
T ss_pred hCcccCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC
Confidence 2222346899999999999999999986 58899999999988888888999999999999999999999999887665
Q ss_pred CceeEEcC---CCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896 210 GSDTYLTS---TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 282 (290)
Q Consensus 210 ~~~~v~~~---~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~ 282 (290)
+...+.+. +++++++|.+++|+|.+|+.+.+.....+++++++|++.||+++|+ +.|+|||+|||++.+...
T Consensus 238 ~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~~~~~~ 312 (463)
T TIGR02053 238 GGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGGLQLE 312 (463)
T ss_pred CEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccC-CCCCEEEeeecCCCcccH
Confidence 55444432 2357999999999999999874322233346678899999999998 799999999999876543
No 19
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=1.4e-35 Score=250.49 Aligned_cols=260 Identities=24% Similarity=0.355 Sum_probs=196.4
Q ss_pred CCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCccc-ccccc-ccccccc--cceEE-eeee
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVI-NHTDYLV--NGRIV-ASPA 84 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~--~~~~~-~~~v 84 (290)
+++++|||||+||+++|..|++ +.+|+||++++...+.-..+......... .+... ...+++. +++++ ...|
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V 81 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWV 81 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEE
Confidence 4699999999999999999964 68999999988654322222222111111 11111 1222222 45655 5678
Q ss_pred eeeecc--eEEecCceEEeccEEEEccCCCCCCCC---c----hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHH
Q 022896 85 INITEN--EVLTAEGRRVVYDYLVIATGHKDPVPK---T----RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEI 155 (290)
Q Consensus 85 ~~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~---~----~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l 155 (290)
+.++++ .+.+ ++..+.||+||+|||+.|..|+ . ....+..+.........+++++|+|+|.+|+|+|..|
T Consensus 82 ~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L 160 (377)
T PRK04965 82 TDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDL 160 (377)
T ss_pred EEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHH
Confidence 888876 3444 6678999999999999976554 1 1223444544555556789999999999999999999
Q ss_pred hhhCCCCeEEEEecCcccccc-CChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896 156 AVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP 234 (290)
Q Consensus 156 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 234 (290)
.. .+.+|+++++.+.+++. +++.+...+.+.+++.|++++.++.++++..+++...+.+.+|+++++|.+|+|+|.+
T Consensus 161 ~~--~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 161 CR--AGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred Hh--cCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCC
Confidence 86 48899999998887655 4677888899999999999999999998887666677788889999999999999999
Q ss_pred CCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896 235 VGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 280 (290)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~ 280 (290)
|+..+++..++.. .+| +.||+++|+ +.|||||+|||+..+.
T Consensus 239 p~~~l~~~~gl~~---~~g-i~vd~~l~t-s~~~VyA~GD~a~~~~ 279 (377)
T PRK04965 239 PNTALARRAGLAV---NRG-IVVDSYLQT-SAPDIYALGDCAEING 279 (377)
T ss_pred cchHHHHHCCCCc---CCC-EEECCCccc-CCCCEEEeeecEeECC
Confidence 9988888777643 244 999999998 7999999999998653
No 20
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=2.4e-36 Score=260.32 Aligned_cols=271 Identities=22% Similarity=0.216 Sum_probs=198.2
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCC--------CCcccchhhh------------------hh----hcC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPK--------EYFEITWASL------------------RA----MVE 59 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~--------~~~~~~~~~~------------------~~----~~~ 59 (290)
.+||++||||||+|+.||..+++ |.+|+|||++ ..+|+.+... .. .+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 36999999999999999999975 7999999984 3444321100 00 000
Q ss_pred C-----cccccccc------------cccccc---ccceEEeeeeeeeecceEEecC--------ceEEeccEEEEccCC
Q 022896 60 P-----SFGKRSVI------------NHTDYL---VNGRIVASPAINITENEVLTAE--------GRRVVYDYLVIATGH 111 (290)
Q Consensus 60 ~-----~~~~~~~~------------~~~~~~---~~~~~~~~~v~~~~~~~v~~~~--------~~~~~~~~vi~a~G~ 111 (290)
. ........ ....++ .+++++.+....++++++.... ...+.||++|+|||+
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs 161 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGS 161 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCC
Confidence 0 00000000 011122 2578889998888888765532 247999999999999
Q ss_pred CCCCCCchH-HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhh-CCCCeEEEEecCccccccCChhHHHHHHHHH
Q 022896 112 KDPVPKTRT-ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVD-FPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL 189 (290)
Q Consensus 112 ~~~~p~~~~-~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (290)
+|..|+..+ ...............+++++|||+|..|+|+|..+... ..+.+|+++++.+.+++.+++++.+.+.+.+
T Consensus 162 ~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L 241 (486)
T TIGR01423 162 WPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQL 241 (486)
T ss_pred CCCCCCCCChhheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHH
Confidence 987665221 11222222222223579999999999999999877542 1378999999999988889999999999999
Q ss_pred HhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCC
Q 022896 190 ISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKN 268 (290)
Q Consensus 190 ~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~ 268 (290)
++.||+++.++.+++++.++++ ..+.+.+|+++++|.+++|+|..|+..++.....+++++++|++.||+++|+ +.||
T Consensus 242 ~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~ 320 (486)
T TIGR01423 242 RANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPN 320 (486)
T ss_pred HHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcC-CCCC
Confidence 9999999999999988765443 5666667888999999999999999887654444456788899999999997 7999
Q ss_pred eEEeccccCcccccc
Q 022896 269 IFAIGDITDIRVSAS 283 (290)
Q Consensus 269 vfa~Gd~~~~~~~~~ 283 (290)
|||+|||++.+...+
T Consensus 321 IyA~GDv~~~~~l~~ 335 (486)
T TIGR01423 321 IYAIGDVTDRVMLTP 335 (486)
T ss_pred EEEeeecCCCcccHH
Confidence 999999998765443
No 21
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=1.1e-35 Score=269.42 Aligned_cols=264 Identities=18% Similarity=0.281 Sum_probs=205.7
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-----CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEee-ee
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-----SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVAS-PA 84 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-----g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~v 84 (290)
+++++|||+|++|+.+|..|.+ +++|+||++++.+.+....+.................+++. +++++.+ .|
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V 82 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA 82 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence 3589999999999999999942 58999999999877554444433332222222222223332 4566654 68
Q ss_pred eeeecc--eEEecCceEEeccEEEEccCCCCCCCC---ch------HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHH
Q 022896 85 INITEN--EVLTAEGRRVVYDYLVIATGHKDPVPK---TR------TERLNQYQAENQKIKSARSILIVGGGPTGVELAG 153 (290)
Q Consensus 85 ~~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~---~~------~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~ 153 (290)
..++++ .|.+.++.++.||+||+|||++|..|+ .. ...+.+...+......+++++|||+|..|+|+|.
T Consensus 83 ~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~ 162 (847)
T PRK14989 83 ITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAG 162 (847)
T ss_pred EEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHH
Confidence 888876 467778888999999999999976543 21 1234445555555567899999999999999999
Q ss_pred HHhhhCCCCeEEEEecCccccc-cCChhHHHHHHHHHHhCCcEEEeCceEeecccCC--CceeEEcCCCcEEeccEEEEc
Q 022896 154 EIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE--GSDTYLTSTGDTINADCHFLC 230 (290)
Q Consensus 154 ~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~--~~~~v~~~~g~~~~~d~vv~a 230 (290)
.|.. .+.+|+++++.+.+++ .+++.....+.+.+++.||+++.++.++++..++ ....+.+.+|+++++|.|++|
T Consensus 163 ~L~~--~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A 240 (847)
T PRK14989 163 ALKN--LGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFS 240 (847)
T ss_pred HHHH--cCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEEC
Confidence 9997 4889999999988766 5788899999999999999999999998886543 235677789999999999999
Q ss_pred cCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896 231 TGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 281 (290)
Q Consensus 231 ~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~ 281 (290)
+|.+|+..+++..++ +++++|+|.||+++|+ +.|+|||+|||+..+..
T Consensus 241 ~G~rPn~~L~~~~Gl--~~~~~G~I~VD~~l~T-s~p~IYAiGD~a~~~~~ 288 (847)
T PRK14989 241 TGIRPQDKLATQCGL--AVAPRGGIVINDSCQT-SDPDIYAIGECASWNNR 288 (847)
T ss_pred CCcccCchHHhhcCc--cCCCCCcEEECCCCcC-CCCCEEEeecceeEcCc
Confidence 999999998877776 4578899999999998 79999999999987653
No 22
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=5.5e-36 Score=265.34 Aligned_cols=266 Identities=21% Similarity=0.245 Sum_probs=193.7
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhh---------------------h--hcC---Ccccc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLR---------------------A--MVE---PSFGK 64 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~---------------------~--~~~---~~~~~ 64 (290)
..|||+||||||+|+++|.+|++ |.+|+|||++ .+|+.|.... . .+. +....
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 46999999999999999999986 9999999998 5565442110 0 000 00000
Q ss_pred cccc--------c-----ccccc---ccceEEeeeeeeeecceE--EecCc--eEEeccEEEEccCCCCCCCCchH---H
Q 022896 65 RSVI--------N-----HTDYL---VNGRIVASPAINITENEV--LTAEG--RRVVYDYLVIATGHKDPVPKTRT---E 121 (290)
Q Consensus 65 ~~~~--------~-----~~~~~---~~~~~~~~~v~~~~~~~v--~~~~~--~~~~~~~vi~a~G~~~~~p~~~~---~ 121 (290)
..+. . +...+ .+++++.+.+..++++.+ ...++ .++.||++|+|||++|..|+..+ .
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~ 255 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKET 255 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCcc
Confidence 0000 0 01111 146788888888887754 33444 36999999999999977665211 1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCce
Q 022896 122 RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGER 201 (290)
Q Consensus 122 ~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 201 (290)
.+............+++++|||+|.+|+|+|..+.. .+.+|+++.+. .++..+++++.+.+.+.+++.||+++.++.
T Consensus 256 ~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~ 332 (561)
T PRK13748 256 PYWTSTEALVSDTIPERLAVIGSSVVALELAQAFAR--LGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQ 332 (561)
T ss_pred ceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCE
Confidence 111111122222356899999999999999999986 58999999985 455567889999999999999999999999
Q ss_pred EeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896 202 VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 281 (290)
Q Consensus 202 v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~ 281 (290)
+++++.+++.+.+.+.++ ++++|.+++|+|.+|+..++.....+++++++|++.||+++|+ +.|||||+|||++.+..
T Consensus 333 v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~~~~ 410 (561)
T PRK13748 333 ASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQPQF 410 (561)
T ss_pred EEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCccc-CCCCEEEeeecCCCccc
Confidence 998877666666666555 6999999999999999887543334446778899999999998 79999999999987654
Q ss_pred cc
Q 022896 282 AS 283 (290)
Q Consensus 282 ~~ 283 (290)
.+
T Consensus 411 ~~ 412 (561)
T PRK13748 411 VY 412 (561)
T ss_pred hh
Confidence 44
No 23
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=8.3e-36 Score=256.43 Aligned_cols=265 Identities=21% Similarity=0.327 Sum_probs=195.6
Q ss_pred CCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCCcccchh-------hh-----------h----hhcC-----Cccc--
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWA-------SL-----------R----AMVE-----PSFG-- 63 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~~~~~~~-------~~-----------~----~~~~-----~~~~-- 63 (290)
+||++||||||+|..+|..+ .|.+|+|+|++.. |+.+. .. . ..+. .++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~-~g~~V~lie~~~~-GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 79 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF-ADKRIAIVEKGTF-GGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDI 79 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH-CCCeEEEEeCCCC-CCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHH
Confidence 59999999999999997655 4999999998653 32110 00 0 0000 0000
Q ss_pred --------ccccccc-ccc-c----ccceEEeeeeeeeecceEEecCceEEeccEEEEccCCCCCCCCc-hH--HHHHHH
Q 022896 64 --------KRSVINH-TDY-L----VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKT-RT--ERLNQY 126 (290)
Q Consensus 64 --------~~~~~~~-~~~-~----~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~~-~~--~~~~~~ 126 (290)
...+... ..+ . .+++++.+.....+..++.+.++.++.||++|+|||++|..|+. .. ..+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~~~~~~~~~ 159 (452)
T TIGR03452 80 VSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHTN 159 (452)
T ss_pred HHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCCCCCCCCCCCCEEEcH
Confidence 0000000 011 1 35778888888888778888778789999999999999887751 11 112222
Q ss_pred HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896 127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS 206 (290)
Q Consensus 127 ~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~ 206 (290)
.........+++++|+|+|+.++|+|..+.. .+.+|+++++.+.+++.+++++...+.+.+ +.+++++.++.+++++
T Consensus 160 ~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~ 236 (452)
T TIGR03452 160 EDIMRLPELPESLVIVGGGYIAAEFAHVFSA--LGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVE 236 (452)
T ss_pred HHHHhhhhcCCcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEE
Confidence 2333323357999999999999999999986 589999999998888778888887777654 4689999999999988
Q ss_pred cCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896 207 VSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS 283 (290)
Q Consensus 207 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~ 283 (290)
.+++++.+.+.+|+++++|.+++|+|..|+.+++.....+++++++|++.||+++|| ++|+|||+|||++.+...+
T Consensus 237 ~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~l~~ 312 (452)
T TIGR03452 237 QDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSPYQLKH 312 (452)
T ss_pred EcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccCcccChh
Confidence 766667777777888999999999999999988655444556788899999999997 8999999999998765554
No 24
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=6.8e-36 Score=258.61 Aligned_cols=267 Identities=20% Similarity=0.249 Sum_probs=193.1
Q ss_pred cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh-----------------------hcC---Ccc
Q 022896 10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA-----------------------MVE---PSF 62 (290)
Q Consensus 10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~-----------------------~~~---~~~ 62 (290)
...++||+||||||+|+++|.+|++ |.+|+|||++. +|+.|..... .+. +..
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 81 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVV 81 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCcc
Confidence 3457999999999999999999986 99999999974 4543321100 000 000
Q ss_pred ccccc--------cc-----ccccc---ccceEEeeeeeeeecce--EEecCc--eEEeccEEEEccCCCCCCCC---ch
Q 022896 63 GKRSV--------IN-----HTDYL---VNGRIVASPAINITENE--VLTAEG--RRVVYDYLVIATGHKDPVPK---TR 119 (290)
Q Consensus 63 ~~~~~--------~~-----~~~~~---~~~~~~~~~v~~~~~~~--v~~~~~--~~~~~~~vi~a~G~~~~~p~---~~ 119 (290)
....+ .. +...+ .+++++.+.+..++++. +.+.++ .++.||+||+|||++|..|+ ..
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~ 161 (468)
T PRK14694 82 DRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLA 161 (468)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCCC
Confidence 00000 00 00111 24678889999998873 555555 47999999999999976554 21
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeC
Q 022896 120 TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLG 199 (290)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 199 (290)
...+............+++++|+|+|..|+|+|..+.. .+.+|+++.+. ++++.+++++.+.+.+.+++.||+++.+
T Consensus 162 ~~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~--~g~~Vtlv~~~-~~l~~~~~~~~~~l~~~l~~~GI~v~~~ 238 (468)
T PRK14694 162 ETPYLTSTSALELDHIPERLLVIGASVVALELAQAFAR--LGSRVTVLARS-RVLSQEDPAVGEAIEAAFRREGIEVLKQ 238 (468)
T ss_pred CCceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEECC-CCCCCCCHHHHHHHHHHHHhCCCEEEeC
Confidence 11111111222222347899999999999999999986 58899999874 5666778889999999999999999999
Q ss_pred ceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896 200 ERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 279 (290)
Q Consensus 200 ~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~ 279 (290)
+.+++++.+++.+.+.+.++ ++++|.+++|+|.+|+.+++....++++. ++|++.||+++|+ +.|+|||+|||++.+
T Consensus 239 ~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~T-s~~~IyA~GD~~~~~ 315 (468)
T PRK14694 239 TQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQT-TVSGIYAAGDCTDQP 315 (468)
T ss_pred CEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCccc-CCCCEEEEeecCCCc
Confidence 99998876665555655444 79999999999999999876433344443 5789999999998 799999999999876
Q ss_pred cccc
Q 022896 280 VSAS 283 (290)
Q Consensus 280 ~~~~ 283 (290)
...+
T Consensus 316 ~~~~ 319 (468)
T PRK14694 316 QFVY 319 (468)
T ss_pred ccHH
Confidence 5443
No 25
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5.9e-36 Score=259.05 Aligned_cols=267 Identities=19% Similarity=0.215 Sum_probs=188.9
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh--------------cCC-----cccccccccc--
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM--------------VEP-----SFGKRSVINH-- 70 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~--------------~~~-----~~~~~~~~~~-- 70 (290)
+||++||||||+|++||.+|++ |++|+|||++.. |+.+...... ... .........+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~-GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 82 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYW-GGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGA 82 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC-CCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHH
Confidence 5999999999999999999986 999999999743 3221111000 000 0000000000
Q ss_pred ----------------cccc--ccceEEeeeeeeeecceEEe--cCc--eEEeccEEEEccCCCCCCC-Cch-HHHHHHH
Q 022896 71 ----------------TDYL--VNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDPVP-KTR-TERLNQY 126 (290)
Q Consensus 71 ----------------~~~~--~~~~~~~~~v~~~~~~~v~~--~~~--~~~~~~~vi~a~G~~~~~p-~~~-~~~~~~~ 126 (290)
...+ .+++.+.+....++...+.. .++ .++.||++|+|||+.|..| +.. ...+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~~~v~~~ 162 (466)
T PRK07818 83 AFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVVTY 162 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCCCcEEch
Confidence 0001 13456666666677665433 343 4789999999999998654 321 1112222
Q ss_pred HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896 127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS 206 (290)
Q Consensus 127 ~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~ 206 (290)
.........+++++|+|+|..|+|+|..+.. .+.+|+++++.+.+++.+++++...+.+.++++||+++.++.|++++
T Consensus 163 ~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~ 240 (466)
T PRK07818 163 EEQILSRELPKSIVIAGAGAIGMEFAYVLKN--YGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESID 240 (466)
T ss_pred HHHhccccCCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence 2222222357899999999999999999986 58899999999998888888999999999999999999999999887
Q ss_pred cCCCceeEEcC--CC--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896 207 VSEGSDTYLTS--TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 282 (290)
Q Consensus 207 ~~~~~~~v~~~--~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~ 282 (290)
.+++.+.+.+. +| +++++|.+++|+|..|+.+.+.....++.++++|++.||+++|+ +.|+|||+|||++.+...
T Consensus 241 ~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~~~~l~ 319 (466)
T PRK07818 241 DNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTAKLQLA 319 (466)
T ss_pred EeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCCCcccH
Confidence 65555444432 56 37999999999999999886433333446678899999999998 799999999999765443
Q ss_pred c
Q 022896 283 S 283 (290)
Q Consensus 283 ~ 283 (290)
+
T Consensus 320 ~ 320 (466)
T PRK07818 320 H 320 (466)
T ss_pred h
Confidence 3
No 26
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=8.3e-36 Score=258.32 Aligned_cols=265 Identities=26% Similarity=0.359 Sum_probs=194.2
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh------------------hhh----cC---Ccccccc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL------------------RAM----VE---PSFGKRS 66 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~------------------~~~----~~---~~~~~~~ 66 (290)
+||++||||||+|+++|.+|++ |.+|+|||+ +.+|+.|... ... +. .......
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 81 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFKK 81 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHHH
Confidence 5999999999999999999986 999999999 4555544210 000 00 0000000
Q ss_pred cccc-------------cc--ccccceEEeeeeeeeecceEEecCceEEeccEEEEccCCC-CCCCCch---HHHHHHHH
Q 022896 67 VINH-------------TD--YLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHK-DPVPKTR---TERLNQYQ 127 (290)
Q Consensus 67 ~~~~-------------~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~-~~~p~~~---~~~~~~~~ 127 (290)
.... .. ...+++++.+.+..+++..+.+ ++.++.||++|+|||+. |.+|+.. ...+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs~~p~ipg~~~~~~~~~~~~~ 160 (460)
T PRK06292 82 VMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTSD 160 (460)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCCCCCCCCCCcccCCCcEECch
Confidence 0000 00 1123566777777777776666 66789999999999999 8888742 12222222
Q ss_pred HHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeeccc
Q 022896 128 AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV 207 (290)
Q Consensus 128 ~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~ 207 (290)
........+++++|+|+|.+|+|+|..+.. .+.+|+++++.+.+++.+++++...+.+.++++ |+++.++.+.+++.
T Consensus 161 ~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~ 237 (460)
T PRK06292 161 DAFELDKLPKSLAVIGGGVIGLELGQALSR--LGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEK 237 (460)
T ss_pred HHhCccccCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEE
Confidence 232223467999999999999999999986 589999999999888888889999999999999 99999999998876
Q ss_pred CCC-ceeEEcCCC--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccccc
Q 022896 208 SEG-SDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS 283 (290)
Q Consensus 208 ~~~-~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~ 283 (290)
+++ .+.+...++ +++++|.+++|+|..|+.+.+.....+++++++|++.||+++|+ +.|+|||+|||++.+...+
T Consensus 238 ~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~~~~~~ 315 (460)
T PRK06292 238 SGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGKPPLLH 315 (460)
T ss_pred cCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCCCccchh
Confidence 544 344433233 47999999999999999886543334446678899999999998 7999999999998765443
No 27
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=8.7e-36 Score=257.44 Aligned_cols=267 Identities=23% Similarity=0.242 Sum_probs=195.4
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hcCC------ccc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MVEP------SFG 63 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~~~------~~~ 63 (290)
++|++|||||++|+.+|..|++ |.+|+|+|++. +|+.+..... .+.. ...
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 3689999999999999999976 99999999976 3432211000 0000 000
Q ss_pred cccc------------ccccccc--ccceEEeeeeee----eecceE--EecCce--EEeccEEEEccCCCCCCCCc---
Q 022896 64 KRSV------------INHTDYL--VNGRIVASPAIN----ITENEV--LTAEGR--RVVYDYLVIATGHKDPVPKT--- 118 (290)
Q Consensus 64 ~~~~------------~~~~~~~--~~~~~~~~~v~~----~~~~~v--~~~~~~--~~~~~~vi~a~G~~~~~p~~--- 118 (290)
.... ..+.+.+ .+++++.+.+.. ++++.+ ...++. ++.||++|+|||+.|..|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~ 159 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEP 159 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCC
Confidence 0000 0011111 146888888888 555543 344554 68999999999999865431
Q ss_pred hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEe
Q 022896 119 RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL 198 (290)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~ 198 (290)
....+.++.........+++++|+|+|..|+|+|..|.. .+.+|+++++.+.+++.+++.+...+.+.++++||+++.
T Consensus 160 ~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~ 237 (466)
T PRK07845 160 DGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTE--LGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLK 237 (466)
T ss_pred CCceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEc
Confidence 111122222222222346899999999999999999986 589999999999988888889999999999999999999
Q ss_pred CceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCc
Q 022896 199 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 278 (290)
Q Consensus 199 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~ 278 (290)
++.+++++.+++++.+.+.+|+++++|.+++++|..|+.+.+.....+++++++|++.||+++|+ +.|||||+|||++.
T Consensus 238 ~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~ 316 (466)
T PRK07845 238 RSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGV 316 (466)
T ss_pred CCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccCC
Confidence 99999887666667777778889999999999999999886433334446778899999999998 89999999999987
Q ss_pred ccccc
Q 022896 279 RVSAS 283 (290)
Q Consensus 279 ~~~~~ 283 (290)
+...+
T Consensus 317 ~~l~~ 321 (466)
T PRK07845 317 LPLAS 321 (466)
T ss_pred ccchh
Confidence 64443
No 28
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.5e-35 Score=255.48 Aligned_cols=267 Identities=20% Similarity=0.225 Sum_probs=195.5
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhh------------------h----hcC---Cccccc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLR------------------A----MVE---PSFGKR 65 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~------------------~----~~~---~~~~~~ 65 (290)
.++|++|||||++|+++|..|++ |.+|+++|+++.+|+.|.... . .+. +.....
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 94 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRG 94 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHH
Confidence 46999999999999999999986 999999999877776653221 0 000 000000
Q ss_pred c--------ccc-----ccccc---ccceEEeeeeeeeecceE--EecCc--eEEeccEEEEccCCCCCCCCchH---HH
Q 022896 66 S--------VIN-----HTDYL---VNGRIVASPAINITENEV--LTAEG--RRVVYDYLVIATGHKDPVPKTRT---ER 122 (290)
Q Consensus 66 ~--------~~~-----~~~~~---~~~~~~~~~v~~~~~~~v--~~~~~--~~~~~~~vi~a~G~~~~~p~~~~---~~ 122 (290)
. ... +...+ .+++++.+.+...+...+ ...++ .++.||++|+|||++|..|+..+ ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~~ 174 (479)
T PRK14727 95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDTP 174 (479)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcCccc
Confidence 0 000 11111 146778888888887743 34454 36899999999999977655211 11
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceE
Q 022896 123 LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV 202 (290)
Q Consensus 123 ~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v 202 (290)
.............+++++|||+|.+|+|+|..+.. .+.+|+++.+. .++..+++++.+.+.+.+++.|++++.++.+
T Consensus 175 ~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~--~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V 251 (479)
T PRK14727 175 YWTSTEALFSDELPASLTVIGSSVVAAEIAQAYAR--LGSRVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQA 251 (479)
T ss_pred eecchHHhccccCCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCcEE
Confidence 11111111122346899999999999999999986 58999999875 5666788889999999999999999999999
Q ss_pred eecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896 203 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 282 (290)
Q Consensus 203 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~ 282 (290)
+.++.+++.+.+.+.++ ++++|.+++|+|..|+..++.....+++++++|++.||+++|+ +.|+|||+|||++.+...
T Consensus 252 ~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~~~~~ 329 (479)
T PRK14727 252 SLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDLPQFV 329 (479)
T ss_pred EEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeec-CCCCEEEeeecCCcchhh
Confidence 98876666666666555 6999999999999999887544444456788899999999998 799999999999876544
Q ss_pred c
Q 022896 283 S 283 (290)
Q Consensus 283 ~ 283 (290)
+
T Consensus 330 ~ 330 (479)
T PRK14727 330 Y 330 (479)
T ss_pred h
Confidence 3
No 29
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.1e-35 Score=257.56 Aligned_cols=266 Identities=18% Similarity=0.232 Sum_probs=191.6
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcC------CCCcccchhhhhh--------------hcC---Ccc--c-cc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDP------KEYFEITWASLRA--------------MVE---PSF--G-KR 65 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~------~~~~~~~~~~~~~--------------~~~---~~~--~-~~ 65 (290)
.||++||||||+|++||.+|++ |.+|+|||+ ...+|+.+..... ... ..+ . ..
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~ 83 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDG 83 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCC
Confidence 6999999999999999999987 999999998 2334433211100 000 000 0 00
Q ss_pred ------ccc------------cccccc--ccceEEeeeeeeee----cceEEec--CceEEeccEEEEccCCCCCC-CCc
Q 022896 66 ------SVI------------NHTDYL--VNGRIVASPAINIT----ENEVLTA--EGRRVVYDYLVIATGHKDPV-PKT 118 (290)
Q Consensus 66 ------~~~------------~~~~~~--~~~~~~~~~v~~~~----~~~v~~~--~~~~~~~~~vi~a~G~~~~~-p~~ 118 (290)
.+. ...+++ .+++++.+.+..++ ...+.+. ++.+++||++|+|||+.|.. |+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p~~ 163 (475)
T PRK06327 84 VKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGV 163 (475)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCCCC
Confidence 000 000111 24577888888877 4455553 34589999999999999853 331
Q ss_pred --hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEE
Q 022896 119 --RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDV 196 (290)
Q Consensus 119 --~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 196 (290)
....+............+++++|+|+|..|+|+|..+.. .+.+|+++++.+.+++..++++...+.+.+++.||++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i 241 (475)
T PRK06327 164 PFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRR--LGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDI 241 (475)
T ss_pred CCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEE
Confidence 111122222222222357999999999999999999886 5899999999998888888889999999999999999
Q ss_pred EeCceEeecccCCCceeEEcCC--C--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEe
Q 022896 197 KLGERVNLDSVSEGSDTYLTST--G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAI 272 (290)
Q Consensus 197 ~~~~~v~~i~~~~~~~~v~~~~--g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~ 272 (290)
+.++.|++++.+++.+.+...+ | +++++|.+++|+|..|+.+++....+.+.++++|++.||+++|+ +.|+|||+
T Consensus 242 ~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~VyA~ 320 (475)
T PRK06327 242 HLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNVYAI 320 (475)
T ss_pred EeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCcc-CCCCEEEE
Confidence 9999999998766665555433 3 46999999999999999886544444456788899999999998 79999999
Q ss_pred ccccCcccc
Q 022896 273 GDITDIRVS 281 (290)
Q Consensus 273 Gd~~~~~~~ 281 (290)
|||+..+..
T Consensus 321 GD~~~~~~~ 329 (475)
T PRK06327 321 GDVVRGPML 329 (475)
T ss_pred EeccCCcch
Confidence 999986543
No 30
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=4.2e-35 Score=255.14 Aligned_cols=263 Identities=22% Similarity=0.269 Sum_probs=191.8
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh----------------------hhhcCCc--cccc
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL----------------------RAMVEPS--FGKR 65 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~----------------------~~~~~~~--~~~~ 65 (290)
..+||++|||||++|++||..+++ |.+|+|||++. +|+..... ...+... ....
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~ 124 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP 124 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence 357999999999999999999987 99999999974 44432110 0001000 0000
Q ss_pred ccc------------cccccc--ccceEEeeeeeeeecceEE----------------------------ecCceEEecc
Q 022896 66 SVI------------NHTDYL--VNGRIVASPAINITENEVL----------------------------TAEGRRVVYD 103 (290)
Q Consensus 66 ~~~------------~~~~~~--~~~~~~~~~v~~~~~~~v~----------------------------~~~~~~~~~~ 103 (290)
... ...+.+ .+++++.+.....++.++. ..++.++.||
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad 204 (561)
T PTZ00058 125 LLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGK 204 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECC
Confidence 000 011111 1457788887777766542 2356689999
Q ss_pred EEEEccCCCCCCCCchHH-HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHH
Q 022896 104 YLVIATGHKDPVPKTRTE-RLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAG 182 (290)
Q Consensus 104 ~vi~a~G~~~~~p~~~~~-~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (290)
++|+|||++|..|+..+. .......... +..+++++|+|+|..|+|+|..+.. .+.+|+++++.+.+++.+++++.
T Consensus 205 ~lVIATGS~P~~P~IpG~~~v~ts~~~~~-l~~pk~VvIIGgG~iGlE~A~~l~~--~G~~Vtli~~~~~il~~~d~~i~ 281 (561)
T PTZ00058 205 NILIAVGNKPIFPDVKGKEFTISSDDFFK-IKEAKRIGIAGSGYIAVELINVVNR--LGAESYIFARGNRLLRKFDETII 281 (561)
T ss_pred EEEEecCCCCCCCCCCCceeEEEHHHHhh-ccCCCEEEEECCcHHHHHHHHHHHH--cCCcEEEEEecccccccCCHHHH
Confidence 999999999876652221 1111222222 2238999999999999999999986 58999999999988888899999
Q ss_pred HHHHHHHHhCCcEEEeCceEeecccCCC-ceeEEcCCC-cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCC
Q 022896 183 DKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTG-DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN 260 (290)
Q Consensus 183 ~~~~~~~~~~gi~~~~~~~v~~i~~~~~-~~~v~~~~g-~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~ 260 (290)
+.+.+.+++.||+++.++.+++++.+++ ++.+...++ +++++|.|++|+|.+|+.+++...++... +++|+|.||++
T Consensus 282 ~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I~VDe~ 360 (561)
T PTZ00058 282 NELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYIKVDDN 360 (561)
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-cCCCeEEECcC
Confidence 9999999999999999999998876543 344444343 57999999999999999988876555433 46799999999
Q ss_pred ccccCCCCeEEeccccCcc
Q 022896 261 LRVKGQKNIFAIGDITDIR 279 (290)
Q Consensus 261 ~~~~~~~~vfa~Gd~~~~~ 279 (290)
+|| ++|+|||+|||++.+
T Consensus 361 lqT-s~p~IYA~GDv~~~~ 378 (561)
T PTZ00058 361 QRT-SVKHIYAVGDCCMVK 378 (561)
T ss_pred Ccc-CCCCEEEeEeccCcc
Confidence 997 899999999999843
No 31
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.9e-35 Score=255.34 Aligned_cols=267 Identities=18% Similarity=0.237 Sum_probs=187.8
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhh--------------hhcCC----cccc--cccccc-
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLR--------------AMVEP----SFGK--RSVINH- 70 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~--------------~~~~~----~~~~--~~~~~~- 70 (290)
+||++||||||+|++||.++++ |++|+|||++..+|+.+.... ..... .+.- .....+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 4899999999999999999986 999999998665665431110 00000 0000 000000
Q ss_pred -----------------ccccc--cceEEeeeeeeeecceEE--ecCc--eEEeccEEEEccCCCCC-CCCch--HHHHH
Q 022896 71 -----------------TDYLV--NGRIVASPAINITENEVL--TAEG--RRVVYDYLVIATGHKDP-VPKTR--TERLN 124 (290)
Q Consensus 71 -----------------~~~~~--~~~~~~~~v~~~~~~~v~--~~~~--~~~~~~~vi~a~G~~~~-~p~~~--~~~~~ 124 (290)
..+++ +++++.+.....++.++. ..++ .++.||++|+|||++|. +|+.. ...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~~~~~~~~ 162 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRII 162 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCCCCCCeEE
Confidence 01111 356677766555555443 3455 36999999999999974 44421 11111
Q ss_pred HHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEee
Q 022896 125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 204 (290)
Q Consensus 125 ~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~ 204 (290)
+..........+++++|+|+|..|+|+|..+.. .+.+|+++++.+++++.+++++...+.+.+++.||+++.++.+++
T Consensus 163 ~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~--~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~ 240 (466)
T PRK06115 163 DSTGALSLPEVPKHLVVIGAGVIGLELGSVWRR--LGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTG 240 (466)
T ss_pred CHHHHhCCccCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEE
Confidence 222222222357999999999999999999886 589999999999988888888999999999999999999999998
Q ss_pred cccCCCceeEEcC-----CCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcc
Q 022896 205 DSVSEGSDTYLTS-----TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 279 (290)
Q Consensus 205 i~~~~~~~~v~~~-----~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~ 279 (290)
++.+++++.+... +++++++|.|++|+|..|+.+.+.....++.++++| +.+|+++|+ ++|+|||+|||++.+
T Consensus 241 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~~~ 318 (466)
T PRK06115 241 ATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTSGP 318 (466)
T ss_pred EEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCCCc
Confidence 8765555444321 235799999999999999988654333344556666 678999997 899999999999876
Q ss_pred cccc
Q 022896 280 VSAS 283 (290)
Q Consensus 280 ~~~~ 283 (290)
...+
T Consensus 319 ~la~ 322 (466)
T PRK06115 319 MLAH 322 (466)
T ss_pred ccHH
Confidence 5444
No 32
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=2.4e-35 Score=255.65 Aligned_cols=263 Identities=23% Similarity=0.305 Sum_probs=193.9
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh--------------------cCC-----cccccc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM--------------------VEP-----SFGKRS 66 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~--------------------~~~-----~~~~~~ 66 (290)
.|||+|||||++|+++|++|++ |.+|+|||+ +.+|+.+...... ... .+....
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEK 79 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHH
Confidence 3899999999999999999986 999999999 5566543211000 000 000000
Q ss_pred cccc------------cccc--ccceEEeeeeeeeecceEEe--cCc-eEEeccEEEEccCCCCCCCCch----HHHHHH
Q 022896 67 VINH------------TDYL--VNGRIVASPAINITENEVLT--AEG-RRVVYDYLVIATGHKDPVPKTR----TERLNQ 125 (290)
Q Consensus 67 ~~~~------------~~~~--~~~~~~~~~v~~~~~~~v~~--~~~-~~~~~~~vi~a~G~~~~~p~~~----~~~~~~ 125 (290)
.... ..++ .+++++.+.+..+++..+.. .++ .++.||++|+|||+.|..|+.. ...+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~~ 159 (461)
T TIGR01350 80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVIT 159 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCceEEc
Confidence 0000 0000 13567778887777775433 333 4799999999999998655421 111222
Q ss_pred HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 126 ~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
..........+++++|+|+|..|+++|..+.. .+.+|+++++.+.+++.+++++...+.+.+++.|++++.++.++++
T Consensus 160 ~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i 237 (461)
T TIGR01350 160 STGALNLKEVPESLVIIGGGVIGIEFASIFAS--LGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAV 237 (461)
T ss_pred chHHhccccCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 23333323357899999999999999999986 4889999999998888888899999999999999999999999988
Q ss_pred ccCCCceeEEcCCC--cEEeccEEEEccCCCCCch--hhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896 206 SVSEGSDTYLTSTG--DTINADCHFLCTGKPVGSD--WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 281 (290)
Q Consensus 206 ~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~--~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~ 281 (290)
+.+++++.+.+.+| +++++|.+++|+|..|+.+ +++..++ .++++|++.||+++|+ +.|+|||+|||+..+..
T Consensus 238 ~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl--~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~~~~~ 314 (461)
T TIGR01350 238 EKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGV--ELDERGRIVVDEYMRT-NVPGIYAIGDVIGGPML 314 (461)
T ss_pred EEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCc--eECCCCcEeeCCCccc-CCCCEEEeeecCCCccc
Confidence 87766666766666 4799999999999999987 4555444 6678899999999998 79999999999976543
No 33
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=1.9e-34 Score=242.91 Aligned_cols=257 Identities=27% Similarity=0.404 Sum_probs=189.5
Q ss_pred cEEEEcCChHHHHHHHHhc----cCCcEEEEcCCCCcccchhhhhhhcCCcc-ccccccccccccc--cceEEeeeeeee
Q 022896 15 RVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSF-GKRSVINHTDYLV--NGRIVASPAINI 87 (290)
Q Consensus 15 dvvIIGaG~aGl~~A~~L~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~v~~~ 87 (290)
+|+|||||++|+++|.+|+ ++++|+|||+++++.+... +........ ..+...+..++++ +++++.+.|+.+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEE
Confidence 5899999999999999994 2689999999987654432 111111111 1222233333332 578888999999
Q ss_pred ecc--eEEecCceEEeccEEEEccCCCCCCCCchH--------HHHHHHHH----HHHHH---hcCCeEEEEcCchhHHH
Q 022896 88 TEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTRT--------ERLNQYQA----ENQKI---KSARSILIVGGGPTGVE 150 (290)
Q Consensus 88 ~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~--------~~~~~~~~----~~~~~---~~~~~v~iiG~g~~~~~ 150 (290)
+++ .+.+.++.++.||+||+|||+.+..|...+ ..+.++.. ..... ...++++|+|+|..++|
T Consensus 80 d~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E 159 (364)
T TIGR03169 80 DPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVE 159 (364)
T ss_pred ecccCEEEECCCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHH
Confidence 876 588888888999999999999965443111 11122221 22222 24579999999999999
Q ss_pred HHHHHhhhC----CCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccE
Q 022896 151 LAGEIAVDF----PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADC 226 (290)
Q Consensus 151 ~a~~l~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~ 226 (290)
+|..|...+ ...+|+++ ..+.++..+++.+...+.+.+++.||+++.++.+++++. + .+.+.+|+++++|.
T Consensus 160 ~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~ 234 (364)
T TIGR03169 160 IALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPD--G--ALILADGRTLPADA 234 (364)
T ss_pred HHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--C--eEEeCCCCEEecCE
Confidence 999997532 12589988 556666677788889999999999999999999987753 2 46667888999999
Q ss_pred EEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896 227 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 280 (290)
Q Consensus 227 vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~ 280 (290)
+++|+|.+|+ .++...++ .++++|++.||+++|++++|||||+|||+..+.
T Consensus 235 vi~a~G~~p~-~~l~~~gl--~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~ 285 (364)
T TIGR03169 235 ILWATGARAP-PWLAESGL--PLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITD 285 (364)
T ss_pred EEEccCCChh-hHHHHcCC--CcCCCCeEEECCccccCCCCCEEEeeeeeecCC
Confidence 9999999986 46665555 457789999999999878999999999997653
No 34
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5.7e-35 Score=253.31 Aligned_cols=264 Identities=21% Similarity=0.257 Sum_probs=188.7
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hcC---Cccccc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MVE---PSFGKR 65 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~~---~~~~~~ 65 (290)
..||++||||||+|++||.+|++ |++|+|+|++ .+|+.+..... .+. ......
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 36999999999999999999986 9999999997 44544311100 000 000000
Q ss_pred ccc------------cccccc--ccceEEeeeeeeeecc-------e--EEecCc--eEEeccEEEEccCCCCCC-CCch
Q 022896 66 SVI------------NHTDYL--VNGRIVASPAINITEN-------E--VLTAEG--RRVVYDYLVIATGHKDPV-PKTR 119 (290)
Q Consensus 66 ~~~------------~~~~~~--~~~~~~~~~v~~~~~~-------~--v~~~~~--~~~~~~~vi~a~G~~~~~-p~~~ 119 (290)
... ...+.+ .+++++.+.+..++++ . +.+.++ .++.||++|+|||++|.. |+..
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~ 161 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLP 161 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCCCC
Confidence 000 000111 1468889999999876 4 444455 579999999999999853 3311
Q ss_pred --HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEE
Q 022896 120 --TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK 197 (290)
Q Consensus 120 --~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~ 197 (290)
...+.+..........+++++|+|+|+.|+|+|..+.. .+.+|+++++.+.+++.+++++...+.+.+++.||+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~--~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~ 239 (472)
T PRK05976 162 FDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLAD--FGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVV 239 (472)
T ss_pred CCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEE
Confidence 11111222222222346899999999999999999986 58999999999988888888999999999999999999
Q ss_pred eCceEeeccc-CCCce-eEEcCCCc--EEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEec
Q 022896 198 LGERVNLDSV-SEGSD-TYLTSTGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIG 273 (290)
Q Consensus 198 ~~~~v~~i~~-~~~~~-~v~~~~g~--~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~G 273 (290)
.++.+++++. .+++. .+.+.+|+ ++++|.+++|+|..|+.+.+....+.+.. .+|++.||+++++ +.|+|||+|
T Consensus 240 ~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~t-s~~~IyAiG 317 (472)
T PRK05976 240 TGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQT-KERHIYAIG 317 (472)
T ss_pred eCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCccc-CCCCEEEee
Confidence 9999988874 13333 33344563 69999999999999988765433333333 4689999999998 699999999
Q ss_pred cccCccc
Q 022896 274 DITDIRV 280 (290)
Q Consensus 274 d~~~~~~ 280 (290)
||++.+.
T Consensus 318 D~~~~~~ 324 (472)
T PRK05976 318 DVIGEPQ 324 (472)
T ss_pred ecCCCcc
Confidence 9997654
No 35
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=2.2e-34 Score=248.64 Aligned_cols=261 Identities=21% Similarity=0.306 Sum_probs=188.4
Q ss_pred CcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCccc--ccccccccccc--ccceEE-eeeee
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG--KRSVINHTDYL--VNGRIV-ASPAI 85 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~-~~~v~ 85 (290)
++|+|||||++|+++|..|++ +.+|+|||+++.+++....+......... .+......+.+ .++++. ...|.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 379999999999999999975 46999999999865432222221111111 11111111112 145554 56888
Q ss_pred eeecc--eEEecC---ceEEe--ccEEEEccCCCCCCCC---chH------HHHHHHHHHHHHH--hcCCeEEEEcCchh
Q 022896 86 NITEN--EVLTAE---GRRVV--YDYLVIATGHKDPVPK---TRT------ERLNQYQAENQKI--KSARSILIVGGGPT 147 (290)
Q Consensus 86 ~~~~~--~v~~~~---~~~~~--~~~vi~a~G~~~~~p~---~~~------~~~~~~~~~~~~~--~~~~~v~iiG~g~~ 147 (290)
.++++ .+.+.+ +..+. ||++|+|||++|..|. ... ..+.+.....+.+ ..+++++|+|+|..
T Consensus 81 ~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~ 160 (444)
T PRK09564 81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFI 160 (444)
T ss_pred EEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHH
Confidence 88765 454433 45566 9999999999975543 211 1122222222222 24689999999999
Q ss_pred HHHHHHHHhhhCCCCeEEEEecCccccc-cCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccE
Q 022896 148 GVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADC 226 (290)
Q Consensus 148 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~ 226 (290)
|+|+|..+.. .+.+|+++.+.+.+++ .+++++.+.+.+.+++.|++++.++.+++++.+++...+.+. +.++++|.
T Consensus 161 g~e~A~~l~~--~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~d~ 237 (444)
T PRK09564 161 GLEAVEAAKH--LGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTD-KGEYEADV 237 (444)
T ss_pred HHHHHHHHHh--cCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeC-CCEEEcCE
Confidence 9999999886 5889999998887765 478889999999999999999999999888654333344444 44799999
Q ss_pred EEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896 227 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 280 (290)
Q Consensus 227 vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~ 280 (290)
+++|+|.+|+.++++..++ +++++|++.||+++|+ ++|||||+|||++.+.
T Consensus 238 vi~a~G~~p~~~~l~~~gl--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~ 288 (444)
T PRK09564 238 VIVATGVKPNTEFLEDTGL--KTLKNGAIIVDEYGET-SIENIYAAGDCATIYN 288 (444)
T ss_pred EEECcCCCcCHHHHHhcCc--cccCCCCEEECCCccc-CCCCEEEeeeEEEEEe
Confidence 9999999999999988776 4567899999999997 7999999999998654
No 36
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=4.2e-34 Score=259.54 Aligned_cols=259 Identities=18% Similarity=0.264 Sum_probs=200.1
Q ss_pred EEEEcCChHHHHHHHHhcc----CCcEEEEcCCCCcccchhhhhhhcCCc-cccccccccccccc--cceEEe-eeeeee
Q 022896 16 VVVIGGGVAGSLVAKSLQF----SADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYLV--NGRIVA-SPAINI 87 (290)
Q Consensus 16 vvIIGaG~aGl~~A~~L~~----g~~v~vie~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~-~~v~~~ 87 (290)
|+|||||+||+++|.+|.+ +++|+|||+++.+++....+....... ...+......+++. ++++.. ..|+.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 6899999999999998843 679999999998765533333332211 11222223333332 456664 578888
Q ss_pred ecc--eEEecCceEEeccEEEEccCCCCCCCC---ch------HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHh
Q 022896 88 TEN--EVLTAEGRRVVYDYLVIATGHKDPVPK---TR------TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIA 156 (290)
Q Consensus 88 ~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~---~~------~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~ 156 (290)
++. .+.+.++.++.||+||+|||+.|..|+ .. ...+.+...+......+++++|||+|..|+|+|..|.
T Consensus 81 d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~ 160 (785)
T TIGR02374 81 DTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQ 160 (785)
T ss_pred ECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHH
Confidence 876 578888889999999999999976543 11 1233444455555567899999999999999999999
Q ss_pred hhCCCCeEEEEecCccccc-cCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 157 VDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 157 ~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
. .+.+|+++++.+.+++ .+++.....+.+.+++.||+++.++.++++..++....+.+.+|+++++|.||+++|.+|
T Consensus 161 ~--~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 161 N--LGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred h--cCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence 7 4889999999888765 477888888999999999999999999888765545667788999999999999999999
Q ss_pred CchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896 236 GSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 281 (290)
Q Consensus 236 ~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~ 281 (290)
+.+++...++.. +|.+.||+++|+ +.|+|||+|||+..+..
T Consensus 239 n~~la~~~gl~~----~ggI~Vd~~~~T-s~p~IyA~GD~a~~~~~ 279 (785)
T TIGR02374 239 NDELAVSAGIKV----NRGIIVNDSMQT-SDPDIYAVGECAEHNGR 279 (785)
T ss_pred CcHHHHhcCCcc----CCCEEECCCccc-CCCCEEEeeecceeCCc
Confidence 999888777643 267999999998 79999999999987654
No 37
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=6.1e-34 Score=247.18 Aligned_cols=260 Identities=21% Similarity=0.192 Sum_probs=187.3
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC--------Ccccchhhhh-----------------------hhcC-
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE--------YFEITWASLR-----------------------AMVE- 59 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~--------~~~~~~~~~~-----------------------~~~~- 59 (290)
+||++||||||+|++||.+|++ |.+|+|||++. .+|+...... ..+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 5999999999999999999986 99999999732 2444321000 0000
Q ss_pred -Ccccccccc-ccc-----------ccc--ccceEEeeeeeeeecceEEecC---ceEEeccEEEEccCCCCCCCC-chH
Q 022896 60 -PSFGKRSVI-NHT-----------DYL--VNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATGHKDPVPK-TRT 120 (290)
Q Consensus 60 -~~~~~~~~~-~~~-----------~~~--~~~~~~~~~v~~~~~~~v~~~~---~~~~~~~~vi~a~G~~~~~p~-~~~ 120 (290)
.......+. ... ..+ .+++++.+.+...+.+++...+ +..++||++|+|||+.|..|. ...
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i~G 164 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPG 164 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCCCC
Confidence 000000000 000 001 1356677777777776665432 357999999999999976653 111
Q ss_pred --HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEe
Q 022896 121 --ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL 198 (290)
Q Consensus 121 --~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~ 198 (290)
...............+++++|+|+|..|+|+|..|.. .+.+|+++.+. .+++.+++.+.+.+.+.+++.||+++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~GV~i~~ 241 (499)
T PTZ00052 165 AKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNE--LGFDVTVAVRS-IPLRGFDRQCSEKVVEYMKEQGTLFLE 241 (499)
T ss_pred ccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcC-cccccCCHHHHHHHHHHHHHcCCEEEc
Confidence 1112222233333456899999999999999999986 58999999874 566778889999999999999999999
Q ss_pred CceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccC
Q 022896 199 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 277 (290)
Q Consensus 199 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~ 277 (290)
++.+++++..++...+.+.+|+++++|.|++++|.+|+.+++....++++++++|++.++++ ++ +.|+|||+|||+.
T Consensus 242 ~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~ 318 (499)
T PTZ00052 242 GVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVE 318 (499)
T ss_pred CCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecC
Confidence 99998887655556677778888999999999999999988754445556788898877777 76 8999999999985
No 38
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=3.4e-34 Score=247.65 Aligned_cols=261 Identities=19% Similarity=0.141 Sum_probs=189.5
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC--------Ccccchhhhh--------------hh------cCCccc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE--------YFEITWASLR--------------AM------VEPSFG 63 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~--------~~~~~~~~~~--------------~~------~~~~~~ 63 (290)
+||++||||||+|+.+|..+++ |.+|++||+.. .+|+.+.... .. ....+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 5899999999999999999986 99999999731 2444321100 00 000000
Q ss_pred c------c--------c----cccccccc--ccceEEeeeeeeeecceEEec--Cc--eEEeccEEEEccCCCCCCCCch
Q 022896 64 K------R--------S----VINHTDYL--VNGRIVASPAINITENEVLTA--EG--RRVVYDYLVIATGHKDPVPKTR 119 (290)
Q Consensus 64 ~------~--------~----~~~~~~~~--~~~~~~~~~v~~~~~~~v~~~--~~--~~~~~~~vi~a~G~~~~~p~~~ 119 (290)
. . . ......++ .+++++.+...+++++++... ++ .++.||++|+|||++|..|+..
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ip 161 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIP 161 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCCC
Confidence 0 0 0 00011112 146789999999998876543 33 4799999999999998766522
Q ss_pred H--HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEE
Q 022896 120 T--ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK 197 (290)
Q Consensus 120 ~--~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~ 197 (290)
+ ....+..........+++++|+|+|.+|+|+|..+.. .+.+|+++.+ +.+++.+++++.+.+.+.|+++||+++
T Consensus 162 G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~ 238 (484)
T TIGR01438 162 GAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAG--IGLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFK 238 (484)
T ss_pred CccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHH--hCCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEE
Confidence 1 1111222222222356899999999999999999986 5899999997 467788899999999999999999999
Q ss_pred eCceEeecccCCCceeEEcCCC---cEEeccEEEEccCCCCCchhhcccccccccCC-CCcEEecCCccccCCCCeEEec
Q 022896 198 LGERVNLDSVSEGSDTYLTSTG---DTINADCHFLCTGKPVGSDWLKDTILKDSLDT-HGMLMVDENLRVKGQKNIFAIG 273 (290)
Q Consensus 198 ~~~~v~~i~~~~~~~~v~~~~g---~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~-~g~~~v~~~~~~~~~~~vfa~G 273 (290)
.++.+++++..++...+...++ +++++|.+++|+|..|+.+++.....++.+++ +|++.||+++|+ +.|+|||+|
T Consensus 239 ~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~G 317 (484)
T TIGR01438 239 RQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVG 317 (484)
T ss_pred eCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEE
Confidence 9999888876555555655444 37999999999999999987654444456665 589999999997 799999999
Q ss_pred cccC
Q 022896 274 DITD 277 (290)
Q Consensus 274 d~~~ 277 (290)
||+.
T Consensus 318 Dv~~ 321 (484)
T TIGR01438 318 DILE 321 (484)
T ss_pred EecC
Confidence 9996
No 39
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=2.2e-34 Score=236.77 Aligned_cols=251 Identities=22% Similarity=0.298 Sum_probs=175.5
Q ss_pred CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh-cCCccc-----cccccccccccc--cceEEeeee
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM-VEPSFG-----KRSVINHTDYLV--NGRIVASPA 84 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~--~~~~~~~~v 84 (290)
+||+|||||++|+++|..|++ |++|+|||++.. ++.+...... ..+.+. .+....+.+++. +..++...|
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v 79 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-GGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEEV 79 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-CcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEEE
Confidence 699999999999999999975 999999999873 3332211100 001111 011111122111 345555788
Q ss_pred eeeecc----eEEecCceEEeccEEEEccCCCCCCCCchHH------HHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHH
Q 022896 85 INITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTE------RLNQYQAENQKIKSARSILIVGGGPTGVELAGE 154 (290)
Q Consensus 85 ~~~~~~----~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~------~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~ 154 (290)
..+++. .+.+.++..+.||++|+|+|..|..|+.... .++...........+++++|+|+|.++++++..
T Consensus 80 ~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~ 159 (300)
T TIGR01292 80 IKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALY 159 (300)
T ss_pred EEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHH
Confidence 888765 3556667789999999999998764432111 111011111233467899999999999999999
Q ss_pred HhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhC-CcEEEeCceEeecccCCCceeEEc-----CCCcEEeccEEE
Q 022896 155 IAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLT-----STGDTINADCHF 228 (290)
Q Consensus 155 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~~-----~~g~~~~~d~vv 228 (290)
+.. .+.+|+++.+.+.+. ....+.+.+++. |++++.++.++++..++....+.. .+++++++|.++
T Consensus 160 l~~--~~~~V~~v~~~~~~~------~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi 231 (300)
T TIGR01292 160 LTR--IAKKVTLVHRRDKFR------AEKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVF 231 (300)
T ss_pred HHh--hcCEEEEEEeCcccC------cCHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEE
Confidence 986 478999999887542 234456667777 999999999988876543223332 223579999999
Q ss_pred EccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccC
Q 022896 229 LCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 277 (290)
Q Consensus 229 ~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~ 277 (290)
+|+|++|+.+++... + .++++|++.+|+++++ ++||||++|||++
T Consensus 232 ~a~G~~~~~~~l~~~-~--~~~~~g~i~v~~~~~t-~~~~vya~GD~~~ 276 (300)
T TIGR01292 232 IAIGHEPNTELLKGL-L--ELDEGGYIVTDEGMRT-SVPGVFAAGDVRD 276 (300)
T ss_pred EeeCCCCChHHHHHh-h--eecCCCcEEECCCCcc-CCCCEEEeecccC
Confidence 999999998888876 3 5578899999999987 8999999999998
No 40
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-34 Score=230.50 Aligned_cols=255 Identities=23% Similarity=0.259 Sum_probs=183.6
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCc-EEEEcCCCCcccchhhhhhhcCCccc-----ccccccccccc--ccceEEee
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SAD-VTLIDPKEYFEITWASLRAMVEPSFG-----KRSVINHTDYL--VNGRIVAS 82 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~-v~vie~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~ 82 (290)
..+||+||||||+||+||.++++ +++ ++|+|+....+.+-.....--.+.+. .+....+.+.. ...++...
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~~ 81 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVED 81 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEEE
Confidence 36999999999999999999987 888 77777654432211111000001111 11122222222 13455667
Q ss_pred eeeeeecc----eEEecCceEEeccEEEEccCCCCCCCC------chHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHH
Q 022896 83 PAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPK------TRTERLNQYQAENQKIKSARSILIVGGGPTGVELA 152 (290)
Q Consensus 83 ~v~~~~~~----~v~~~~~~~~~~~~vi~a~G~~~~~p~------~~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a 152 (290)
.+..++.. .+.++++. +++++||+|||..+..|+ +.+..++.+..+.. +..+++++|+|+|+++++.|
T Consensus 82 ~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~A 159 (305)
T COG0492 82 EVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEA 159 (305)
T ss_pred EEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHHHHH
Confidence 77777654 56777776 999999999999855443 22233444444444 66788999999999999999
Q ss_pred HHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhC-CcEEEeCceEeecccCC-CceeEEcCCC--cEEeccEEE
Q 022896 153 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-KVDVKLGERVNLDSVSE-GSDTYLTSTG--DTINADCHF 228 (290)
Q Consensus 153 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~-~~~~v~~~~g--~~~~~d~vv 228 (290)
.+|.+ ...+|++++|++.+. ..+.+.+.+++. ++++++++.++++..++ .++.+....| +.+.+|.++
T Consensus 160 l~L~~--~a~~Vtlv~r~~~~r------a~~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf 231 (305)
T COG0492 160 LYLSK--IAKKVTLVHRRDEFR------AEEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVF 231 (305)
T ss_pred HHHHH--hcCeEEEEecCcccC------cCHHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEE
Confidence 99997 478899999998873 355666677766 89999999998888766 3344443223 378999999
Q ss_pred EccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896 229 LCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 280 (290)
Q Consensus 229 ~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~ 280 (290)
+++|+.|+..++...+. ++++|++.+|+.++| |+|+|||+||++..+.
T Consensus 232 ~~iG~~p~~~~~~~~~~---~~~~g~I~v~~~~~T-svpGifAaGDv~~~~~ 279 (305)
T COG0492 232 IAIGHLPNTELLKGLGV---LDENGYIVVDEEMET-SVPGIFAAGDVADKNG 279 (305)
T ss_pred EecCCCCchHHHhhccc---cCCCCcEEcCCCccc-CCCCEEEeEeeccCcc
Confidence 99999999999888764 689999999999887 8999999999999875
No 41
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1e-33 Score=244.38 Aligned_cols=263 Identities=22% Similarity=0.233 Sum_probs=187.5
Q ss_pred cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchh--------hh--------------hhhcC----C-cccccc
Q 022896 15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWA--------SL--------------RAMVE----P-SFGKRS 66 (290)
Q Consensus 15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~--------~~--------------~~~~~----~-~~~~~~ 66 (290)
+++||||||+|++||.+|++ |.+|+|||++...| .+. .+ ...+. . ......
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG-~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGG-TCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccc-cCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 89999999999999999986 99999999986432 211 00 00010 0 000000
Q ss_pred cccc------------cccc--ccceEEeeeeeeeecceEEe--cCc-eEEeccEEEEccCCCCCCCC---chHHHHHHH
Q 022896 67 VINH------------TDYL--VNGRIVASPAINITENEVLT--AEG-RRVVYDYLVIATGHKDPVPK---TRTERLNQY 126 (290)
Q Consensus 67 ~~~~------------~~~~--~~~~~~~~~v~~~~~~~v~~--~~~-~~~~~~~vi~a~G~~~~~p~---~~~~~~~~~ 126 (290)
.... ..++ .+++++.+.+..++++.+.. +++ .++.||++|+|||++|..|+ .....+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~~v~~~ 160 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINS 160 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCCeEEcc
Confidence 0000 0111 24678889998888885443 344 47999999999999976443 211112222
Q ss_pred HHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896 127 QAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS 206 (290)
Q Consensus 127 ~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~ 206 (290)
.........+++++|+|+|+.|+|+|..+.. .+.+|+++++.+.+++..++++.+.+.+.+++.||+++.++.+++++
T Consensus 161 ~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~ 238 (458)
T PRK06912 161 KHAMSLPSIPSSLLIVGGGVIGCEFASIYSR--LGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLN 238 (458)
T ss_pred hHHhCccccCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence 2233333357899999999999999999886 58899999999988888888999999999999999999999998887
Q ss_pred cCCCceeEEcCCC-cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896 207 VSEGSDTYLTSTG-DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 282 (290)
Q Consensus 207 ~~~~~~~v~~~~g-~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~ 282 (290)
.++..+.+...++ +++++|.+++|+|..|+.+.+.....++.++++| +.||+++|+ +.|||||+|||++.+...
T Consensus 239 ~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~~~~la 313 (458)
T PRK06912 239 SYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIGGIQLA 313 (458)
T ss_pred EcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeec-CCCCEEEEeecCCCcccH
Confidence 6555444443222 3699999999999999987654333333556666 999999998 799999999999865443
No 42
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-33 Score=249.20 Aligned_cols=204 Identities=22% Similarity=0.278 Sum_probs=154.5
Q ss_pred ceEEeeeeeeeecceEEe-cCceEEeccEEEEccCCCCCCCCc---hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHH
Q 022896 77 GRIVASPAINITENEVLT-AEGRRVVYDYLVIATGHKDPVPKT---RTERLNQYQAENQKIKSARSILIVGGGPTGVELA 152 (290)
Q Consensus 77 ~~~~~~~v~~~~~~~v~~-~~~~~~~~~~vi~a~G~~~~~p~~---~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a 152 (290)
++++.+....++++++.. .++.++.||++|+|||++|.+|+. ....+............+++++|||+|..|+|+|
T Consensus 249 v~vi~G~a~f~~~~~v~v~~~g~~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A 328 (659)
T PTZ00153 249 VQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFM 328 (659)
T ss_pred eEEEEeEEEEecCCeEEEccCCEEEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHH
Confidence 466777777777776654 356789999999999999887761 1111222233322233578999999999999999
Q ss_pred HHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHH-HhCCcEEEeCceEeecccCCCc--eeEEcC-------CC---
Q 022896 153 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL-ISKKVDVKLGERVNLDSVSEGS--DTYLTS-------TG--- 219 (290)
Q Consensus 153 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gi~~~~~~~v~~i~~~~~~--~~v~~~-------~g--- 219 (290)
..+.. .+.+|+++++.+.+++.+++++...+.+.+ ++.||+++.++.|++++.+++. +.+... ++
T Consensus 329 ~~l~~--~G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~ 406 (659)
T PTZ00153 329 DIYTA--LGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKK 406 (659)
T ss_pred HHHHh--CCCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEecccccccccccc
Confidence 99886 588999999999999889988888888875 6789999999999988765433 444321 11
Q ss_pred -----cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccC-----CCCeEEeccccCcccccc
Q 022896 220 -----DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKG-----QKNIFAIGDITDIRVSAS 283 (290)
Q Consensus 220 -----~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~-----~~~vfa~Gd~~~~~~~~~ 283 (290)
+++++|.|++|+|.+|+.+.+.....++.++ +|+|.||+++|+.. +|+|||+|||++.+...+
T Consensus 407 ~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~-~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~ 479 (659)
T PTZ00153 407 NMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMK-RGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAH 479 (659)
T ss_pred ccccceEEEcCEEEEEECcccCCccCCchhcCCccc-CCEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHH
Confidence 2699999999999999998764333344554 58999999999841 699999999998765444
No 43
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=6.3e-33 Score=229.58 Aligned_cols=257 Identities=15% Similarity=0.167 Sum_probs=172.5
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh---cC--Ccccccc-ccccccccc--cceEEee
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM---VE--PSFGKRS-VINHTDYLV--NGRIVAS 82 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~---~~--~~~~~~~-~~~~~~~~~--~~~~~~~ 82 (290)
..+||+||||||+||+||.+|++ |+++++||+.. .++.+...... .. ....... ...+.+... ..++...
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec-CCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee
Confidence 46999999999999999999975 99999999654 33322111100 00 0000000 111111111 1234444
Q ss_pred eeeeeecc--e--EEecCceEEeccEEEEccCCCCCCCCchHH------HHHHHHHHHHHHhcCCeEEEEcCchhHHHHH
Q 022896 83 PAINITEN--E--VLTAEGRRVVYDYLVIATGHKDPVPKTRTE------RLNQYQAENQKIKSARSILIVGGGPTGVELA 152 (290)
Q Consensus 83 ~v~~~~~~--~--v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~------~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a 152 (290)
.+..++.. . +..+ ...+.||+||+|||+.|..|+.... .++.+.........+++++|+|+|.+++|+|
T Consensus 84 ~v~~v~~~~~~~~v~~~-~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A 162 (321)
T PRK10262 84 HINKVDLQNRPFRLTGD-SGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEA 162 (321)
T ss_pred EEEEEEecCCeEEEEec-CCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHH
Confidence 55555543 2 3322 3468999999999999765542211 1111222223345689999999999999999
Q ss_pred HHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCC------CcEEecc
Q 022896 153 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTST------GDTINAD 225 (290)
Q Consensus 153 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~------g~~~~~d 225 (290)
..|.. .+.+|+++.+.+.+. ..+.+.+.+.+.+++.||++++++.++++..++.. ..+.+.+ .+++++|
T Consensus 163 ~~l~~--~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D 238 (321)
T PRK10262 163 LYLSN--IASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVA 238 (321)
T ss_pred HHHHh--hCCEEEEEEECCccC--CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECC
Confidence 99986 488999999987652 33457778888899999999999999888765533 2233222 1379999
Q ss_pred EEEEccCCCCCchhhcccccccccCCCCcEEecC-----CccccCCCCeEEeccccCcc
Q 022896 226 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-----NLRVKGQKNIFAIGDITDIR 279 (290)
Q Consensus 226 ~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~-----~~~~~~~~~vfa~Gd~~~~~ 279 (290)
.|++++|..|+..++.. ++. + ++|++.+|+ ++++ ++|+|||+|||++.+
T Consensus 239 ~vv~a~G~~p~~~l~~~-~l~--~-~~g~i~vd~~~~~~~~~t-~~~~VyA~GD~~~~~ 292 (321)
T PRK10262 239 GLFVAIGHSPNTAIFEG-QLE--L-ENGYIKVQSGIHGNATQT-SIPGVFAAGDVMDHI 292 (321)
T ss_pred EEEEEeCCccChhHhhc-ccc--c-cCCEEEECCCCccccccc-CCCCEEECeeccCCC
Confidence 99999999999887764 343 3 468999998 5566 899999999999754
No 44
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=1.1e-32 Score=240.52 Aligned_cols=256 Identities=21% Similarity=0.273 Sum_probs=176.6
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh---hcCC--ccccccccccccccc--cceEE-e
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA---MVEP--SFGKRSVINHTDYLV--NGRIV-A 81 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~--~~~~~-~ 81 (290)
...+||+||||||+|++||.+|++ |++|+||++. +|+.+..... .... ....+....+.+++. ++++. .
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~ 287 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMEN 287 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcC
Confidence 346999999999999999999987 9999999753 4443321100 0000 000111111111111 34443 3
Q ss_pred eeeeeeecc----eEEecCceEEeccEEEEccCCCCCCCCchHH-H-----HHHHHHHHHHHhcCCeEEEEcCchhHHHH
Q 022896 82 SPAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTE-R-----LNQYQAENQKIKSARSILIVGGGPTGVEL 151 (290)
Q Consensus 82 ~~v~~~~~~----~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~-~-----~~~~~~~~~~~~~~~~v~iiG~g~~~~~~ 151 (290)
..|..++.. .+.+.++..+.||++++|+|+.|..|+.... . +............+++++|+|+|++|+|+
T Consensus 288 ~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~ 367 (515)
T TIGR03140 288 QRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEA 367 (515)
T ss_pred CEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHH
Confidence 566666543 3566677789999999999998654442111 0 00011111233468999999999999999
Q ss_pred HHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHh-CCcEEEeCceEeecccCCCce-eEEcC---CC--cEEec
Q 022896 152 AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTS---TG--DTINA 224 (290)
Q Consensus 152 a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~-~v~~~---~g--~~~~~ 224 (290)
|..|.. .+.+|+++++.+.+. ....+.+.+++ .||+++.++.++++..+++.. .+.+. +| +++++
T Consensus 368 A~~L~~--~g~~Vtli~~~~~l~------~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~ 439 (515)
T TIGR03140 368 AIDLAG--IVRHVTVLEFADELK------ADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDL 439 (515)
T ss_pred HHHHHh--cCcEEEEEEeCCcCC------hhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEc
Confidence 999985 478999999877652 23456667766 699999999998887664442 24432 22 46899
Q ss_pred cEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896 225 DCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 280 (290)
Q Consensus 225 d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~ 280 (290)
|.+++++|..|+.++++.. + +++++|++.||+++|| ++|+|||+|||++.+.
T Consensus 440 D~vi~a~G~~Pn~~~l~~~-~--~~~~~G~I~vd~~~~T-s~p~IyAaGDv~~~~~ 491 (515)
T TIGR03140 440 DGVFVQIGLVPNTEWLKDA-V--ELNRRGEIVIDERGRT-SVPGIFAAGDVTTVPY 491 (515)
T ss_pred CEEEEEeCCcCCchHHhhh-c--ccCCCCeEEECCCCCC-CCCCEEEcccccCCcc
Confidence 9999999999999998764 3 5677899999999998 7999999999998754
No 45
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.1e-33 Score=216.37 Aligned_cols=271 Identities=20% Similarity=0.235 Sum_probs=210.2
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh----------------------hc----CCcccc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA----------------------MV----EPSFGK 64 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~----------------------~~----~~~~~~ 64 (290)
..+|.+|||||..|+++|++.++ |.++.|+|..-.+|+....... .+ ...|.+
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW 98 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDW 98 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcH
Confidence 47999999999999999999987 9999999988544432211000 00 001111
Q ss_pred cccc--------ccccccc------cceEEeeeeeeeecce--EEecCce--EEeccEEEEccCCCCCCCCch-HHHHHH
Q 022896 65 RSVI--------NHTDYLV------NGRIVASPAINITENE--VLTAEGR--RVVYDYLVIATGHKDPVPKTR-TERLNQ 125 (290)
Q Consensus 65 ~~~~--------~~~~~~~------~~~~~~~~v~~~~~~~--v~~~~~~--~~~~~~vi~a~G~~~~~p~~~-~~~~~~ 125 (290)
.... ++...++ .+.++.+....+++.. +...++. .++++++++|+|.+|.+|... .+.-.+
T Consensus 99 ~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gid 178 (478)
T KOG0405|consen 99 KVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGID 178 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhhccc
Confidence 1111 1111111 3477889999998884 5555663 378999999999996655422 222234
Q ss_pred HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 126 ~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
.+.+++....++|++|+|+|+.+.|+|..+.. .+.+++++.|.+.+++.|++.+...+.+.++..||+++.++.++.+
T Consensus 179 SDgff~Lee~Pkr~vvvGaGYIavE~Agi~~g--LgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v 256 (478)
T KOG0405|consen 179 SDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAG--LGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKV 256 (478)
T ss_pred cccccchhhcCceEEEEccceEEEEhhhHHhh--cCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceee
Confidence 45556666779999999999999999999985 6999999999999999999999999999999999999999999988
Q ss_pred ccCCCc-eeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccccC
Q 022896 206 SVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM 284 (290)
Q Consensus 206 ~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~~~ 284 (290)
....++ ..+....|+...+|.+++|+|..|+..-|..+..++.++.+|.|.+|++.+| |.|+||++||+++--+....
T Consensus 257 ~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~gk~~LTPV 335 (478)
T KOG0405|consen 257 IKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTGKINLTPV 335 (478)
T ss_pred eecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccC-CCCceEEeccccCcEecchH
Confidence 776665 6666677766679999999999999999988888999999999999999998 89999999999997665543
Q ss_pred C
Q 022896 285 I 285 (290)
Q Consensus 285 ~ 285 (290)
+
T Consensus 336 A 336 (478)
T KOG0405|consen 336 A 336 (478)
T ss_pred H
Confidence 3
No 46
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.3e-32 Score=217.88 Aligned_cols=271 Identities=18% Similarity=0.260 Sum_probs=212.4
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh-----c---------CC-cccc------c---c
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM-----V---------EP-SFGK------R---S 66 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~-----~---------~~-~~~~------~---~ 66 (290)
.++|++|||+||.|..||...++ |++..++|++..+|+..-..... + .. ++.. . .
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 57999999999999999999976 99999999999877543211110 0 00 0000 0 0
Q ss_pred ccc---------------cccccc--cceEEeeeeeeeecceEEe--cCc--eEEeccEEEEccCCC-CCCCC--chHHH
Q 022896 67 VIN---------------HTDYLV--NGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHK-DPVPK--TRTER 122 (290)
Q Consensus 67 ~~~---------------~~~~~~--~~~~~~~~v~~~~~~~v~~--~~~--~~~~~~~vi~a~G~~-~~~p~--~~~~~ 122 (290)
+.. +...++ ++.++.+....++|.++.. .++ ..+.++++++|||+. +.+|+ -+...
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~IDekk 197 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGITIDEKK 197 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCCCeEecCce
Confidence 000 001111 3466788888888886544 344 478999999999996 77888 34455
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceE
Q 022896 123 LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV 202 (290)
Q Consensus 123 ~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v 202 (290)
+.+....+....-+++++|+|+|..|+|+...+.. .+.+||+++-.+.+.+.++.++.+.+.+.|+..|++|+.++++
T Consensus 198 IVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~r--LGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv 275 (506)
T KOG1335|consen 198 IVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSR--LGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKV 275 (506)
T ss_pred EEecCCccchhhCcceEEEEcCceeeeehhhHHHh--cCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEE
Confidence 55555566666679999999999999999998874 7999999999999999999999999999999999999999999
Q ss_pred eecccCCC-ceeEEc---CCC--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEecccc
Q 022896 203 NLDSVSEG-SDTYLT---STG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 276 (290)
Q Consensus 203 ~~i~~~~~-~~~v~~---~~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~ 276 (290)
.....+.+ .+.++. .++ ++++||.+++++|.+|...-|..+.++++.|+.|++++|..+++ .+|+||++||++
T Consensus 276 ~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~ 354 (506)
T KOG1335|consen 276 TSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVT 354 (506)
T ss_pred EEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccc-cCCceEEecccC
Confidence 99988777 444433 222 47999999999999999888887778888899999999999998 799999999999
Q ss_pred CccccccCC
Q 022896 277 DIRVSASMI 285 (290)
Q Consensus 277 ~~~~~~~~~ 285 (290)
..|..+|.+
T Consensus 355 ~gpMLAhkA 363 (506)
T KOG1335|consen 355 LGPMLAHKA 363 (506)
T ss_pred Ccchhhhhh
Confidence 999887754
No 47
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=2.5e-32 Score=238.66 Aligned_cols=255 Identities=21% Similarity=0.250 Sum_probs=176.3
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcC-Cccc----cccccccccccc--cceEE-ee
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE-PSFG----KRSVINHTDYLV--NGRIV-AS 82 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~--~~~~~-~~ 82 (290)
..+|++||||||+|++||.+|++ |++|+||++. +|+.+.......+ ..+. .+....+.+... ++++. ..
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~ 287 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQ 287 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCC
Confidence 46999999999999999999976 9999999874 4544421110000 0000 011111111111 23333 45
Q ss_pred eeeeeecc----eEEecCceEEeccEEEEccCCCCCCCCchHH-HH-----HHHHHHHHHHhcCCeEEEEcCchhHHHHH
Q 022896 83 PAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTE-RL-----NQYQAENQKIKSARSILIVGGGPTGVELA 152 (290)
Q Consensus 83 ~v~~~~~~----~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~-~~-----~~~~~~~~~~~~~~~v~iiG~g~~~~~~a 152 (290)
.+..++.. .+.+.++.++.|+.+|+|+|.+|..|+.... .+ +...........+++++|+|+|++|+++|
T Consensus 288 ~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A 367 (517)
T PRK15317 288 RASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAA 367 (517)
T ss_pred EEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHH
Confidence 67777653 4566677789999999999998655431111 10 00111122334689999999999999999
Q ss_pred HHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHh-CCcEEEeCceEeecccCCCce-eEEc---CCC--cEEecc
Q 022896 153 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLT---STG--DTINAD 225 (290)
Q Consensus 153 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~-~v~~---~~g--~~~~~d 225 (290)
..|.. .+.+|+++.+.+.+. ....+.+.+.+ .||+++.++.++++..+++.+ .+.. .+| +++++|
T Consensus 368 ~~L~~--~~~~Vtlv~~~~~l~------~~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D 439 (517)
T PRK15317 368 IDLAG--IVKHVTVLEFAPELK------ADQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELE 439 (517)
T ss_pred HHHHh--cCCEEEEEEECcccc------ccHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcC
Confidence 99986 588999999887652 22345556665 699999999999888764442 2332 233 369999
Q ss_pred EEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896 226 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 280 (290)
Q Consensus 226 ~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~ 280 (290)
.+++++|..|+.++++.. +.++++|++.+|+++|+ ++|+|||+|||++.+.
T Consensus 440 ~v~~~~G~~p~~~~l~~~---v~~~~~g~i~vd~~l~T-s~p~IyAaGDv~~~~~ 490 (517)
T PRK15317 440 GVFVQIGLVPNTEWLKGT---VELNRRGEIIVDARGAT-SVPGVFAAGDCTTVPY 490 (517)
T ss_pred EEEEeECCccCchHHhhh---eeeCCCCcEEECcCCCC-CCCCEEECccccCCCC
Confidence 999999999999998765 36678899999999997 8999999999998753
No 48
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=2e-31 Score=234.28 Aligned_cols=252 Identities=17% Similarity=0.238 Sum_probs=168.9
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh-cCCcc---c-cccccccccccc--cceEEeeee
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM-VEPSF---G-KRSVINHTDYLV--NGRIVASPA 84 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~-~~~~~---~-~~~~~~~~~~~~--~~~~~~~~v 84 (290)
.|||+|||||||||+||.+|++ |++|+|||++. +++.+...... ..+.. . ......+.+... ++++..+.|
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~V 82 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQAEV 82 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEeccEE
Confidence 5999999999999999999976 99999999975 44332211110 00000 0 111111111111 356667777
Q ss_pred eeeecc----eEEecCceEEeccEEEEccCCCCCCCCchHHH------HHHHHHHHHHHhcCCeEEEEcCchhHHHHHHH
Q 022896 85 INITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTER------LNQYQAENQKIKSARSILIVGGGPTGVELAGE 154 (290)
Q Consensus 85 ~~~~~~----~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~~------~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~ 154 (290)
..++.. .+.+.++ .+.++++|+|||+.|..|+..+.. ++.+.........+++++|+|+|++|+|+|..
T Consensus 83 ~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~ 161 (555)
T TIGR03143 83 LDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVF 161 (555)
T ss_pred EEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHH
Confidence 777653 2444444 688999999999997655522211 11111112233468999999999999999999
Q ss_pred HhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeE---EcCCCcEE----eccE-
Q 022896 155 IAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY---LTSTGDTI----NADC- 226 (290)
Q Consensus 155 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v---~~~~g~~~----~~d~- 226 (290)
+.. .+.+|+++.+.+.+.. .... ..+.++..||+++.++.|+++..++....+ ...+|+.. ++|.
T Consensus 162 L~~--~g~~Vtli~~~~~~~~--~~~~---~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~ 234 (555)
T TIGR03143 162 LTR--YASKVTVIVREPDFTC--AKLI---AEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAG 234 (555)
T ss_pred HHc--cCCEEEEEEeCCcccc--CHHH---HHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEecccccc
Confidence 885 5899999999876521 1122 222334569999999999888754332222 23456533 3666
Q ss_pred ---EEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccC
Q 022896 227 ---HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 277 (290)
Q Consensus 227 ---vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~ 277 (290)
|++++|..|+..+++. .+ .++++|++.||+++++ ++|+|||+|||+.
T Consensus 235 ~~~Vi~a~G~~Pn~~l~~~-~l--~l~~~G~I~vd~~~~T-s~p~IyAaGDv~~ 284 (555)
T TIGR03143 235 TFGVFVFVGYAPSSELFKG-VV--ELDKRGYIPTNEDMET-NVPGVYAAGDLRP 284 (555)
T ss_pred ceEEEEEeCCCCChhHHhh-hc--ccCCCCeEEeCCcccc-CCCCEEEceeccC
Confidence 9999999999988765 33 5678899999999998 7999999999975
No 49
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.98 E-value=1.5e-30 Score=212.75 Aligned_cols=264 Identities=22% Similarity=0.355 Sum_probs=208.5
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cce-EEeeeee
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGR-IVASPAI 85 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~v~ 85 (290)
....++|||+|++|..|+.+++. -.+++++-++..+.+....+........ .....+..+|++ .++ +..+.|+
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~-~~~a~r~~e~Yke~gIe~~~~t~v~ 151 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVG-EGLAKRTPEFYKEKGIELILGTSVV 151 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeecc-ccccccChhhHhhcCceEEEcceeE
Confidence 35789999999999999999975 4688888887776655533332221111 111122223333 233 3577888
Q ss_pred eeecc--eEEecCceEEeccEEEEccCCC---CCCCC------chHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHH
Q 022896 86 NITEN--EVLTAEGRRVVYDYLVIATGHK---DPVPK------TRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGE 154 (290)
Q Consensus 86 ~~~~~--~v~~~~~~~~~~~~vi~a~G~~---~~~p~------~~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~ 154 (290)
.+|.. ++.+.+|..+.|++++||||+. +.+|+ ...+.+.+............+++++|+|..++|++..
T Consensus 152 ~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~ 231 (478)
T KOG1336|consen 152 KADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAA 231 (478)
T ss_pred EeeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHH
Confidence 88765 6999999999999999999996 45555 3344555555566666678899999999999999999
Q ss_pred HhhhCCCCeEEEEecCccccc-cCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEcCCCcEEeccEEEEcc
Q 022896 155 IAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCT 231 (290)
Q Consensus 155 l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~ 231 (290)
|.. .+.+|+++++.+..++ .+.+.+.+.+++.++++|++++.++.+.+++..+++ ..+.+.+|.++++|.+++.+
T Consensus 232 l~~--~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~Gi 309 (478)
T KOG1336|consen 232 LVS--KAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGI 309 (478)
T ss_pred HHh--cCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEee
Confidence 997 4899999999988877 467789999999999999999999999998877644 67788999999999999999
Q ss_pred CCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896 232 GKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 282 (290)
Q Consensus 232 G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~ 282 (290)
|.+|+.++++. +. .+++.|++.||.++|+ +.|||||+||+++.|...
T Consensus 310 G~~p~t~~~~~-g~--~~~~~G~i~V~~~f~t-~~~~VyAiGDva~fp~~~ 356 (478)
T KOG1336|consen 310 GIKPNTSFLEK-GI--LLDSKGGIKVDEFFQT-SVPNVYAIGDVATFPLKG 356 (478)
T ss_pred ccccccccccc-cc--eecccCCEeehhceee-ccCCcccccceeeccccc
Confidence 99999999987 33 4578999999999999 699999999999988643
No 50
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.97 E-value=3.8e-31 Score=227.23 Aligned_cols=254 Identities=20% Similarity=0.160 Sum_probs=167.6
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcC-Cccccccccccccccc--cceEEeeeeee
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE-PSFGKRSVINHTDYLV--NGRIVASPAIN 86 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~v~~ 86 (290)
...+||+|||||++||++|.+|++ |++|+|||+.+.+++.+.. .+. .....+......+.+. ++++..+...
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~---gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v- 206 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTY---GIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLV- 206 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeee---cCCCccCCHHHHHHHHHHHHhCCcEEEeCCcc-
Confidence 346899999999999999999976 9999999998876644321 010 0111111111111111 3344433322
Q ss_pred eecceEEecCceEEeccEEEEccCC-CCC---CCCchHHHHHHHHHHHH---------------HHhcCCeEEEEcCchh
Q 022896 87 ITENEVLTAEGRRVVYDYLVIATGH-KDP---VPKTRTERLNQYQAENQ---------------KIKSARSILIVGGGPT 147 (290)
Q Consensus 87 ~~~~~v~~~~~~~~~~~~vi~a~G~-~~~---~p~~~~~~~~~~~~~~~---------------~~~~~~~v~iiG~g~~ 147 (290)
...+.+.+. ...||+|++|||+ .|. +|+.....+......+. ....+++++|||+|++
T Consensus 207 --~~~v~~~~~-~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 283 (449)
T TIGR01316 207 --GKTATLEEL-FSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNT 283 (449)
T ss_pred --CCcCCHHHH-HhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHH
Confidence 112333332 3469999999998 454 44432211111111110 1235789999999999
Q ss_pred HHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-e-eEEcC--------
Q 022896 148 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-D-TYLTS-------- 217 (290)
Q Consensus 148 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~-~v~~~-------- 217 (290)
|+|+|..+.. .+.+|+++.+.+... + .......+.+++.||++++++.+.++..++++ + .+.+.
T Consensus 284 a~d~A~~l~~--~G~~Vtlv~~~~~~~--~--~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~ 357 (449)
T TIGR01316 284 AVDSARTALR--LGAEVHCLYRRTRED--M--TARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQI 357 (449)
T ss_pred HHHHHHHHHH--cCCEEEEEeecCccc--C--CCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcC
Confidence 9999999886 488899999875421 1 11223345678899999999999887654332 2 22221
Q ss_pred -CC-----------cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896 218 -TG-----------DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 280 (290)
Q Consensus 218 -~g-----------~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~ 280 (290)
+| .++++|.||+|+|..|+..+++..++ +++++|++.||++++| +.|+|||+|||+..+.
T Consensus 358 ~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl--~~~~~G~i~vd~~~~T-s~~~VfA~GD~~~g~~ 429 (449)
T TIGR01316 358 DSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRL--KTSERGTIVVDEDQRT-SIPGVFAGGDIILGAA 429 (449)
T ss_pred CCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCc--ccCCCCeEEeCCCCcc-CCCCEEEecCCCCCcH
Confidence 22 26999999999999999888877665 5678899999999998 7999999999997664
No 51
>PRK12831 putative oxidoreductase; Provisional
Probab=99.97 E-value=8.6e-31 Score=225.39 Aligned_cols=258 Identities=19% Similarity=0.177 Sum_probs=165.6
Q ss_pred cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccc-cccccccccc--cceEEeeeee
Q 022896 10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKR-SVINHTDYLV--NGRIVASPAI 85 (290)
Q Consensus 10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~v~ 85 (290)
....+||+||||||+||++|++|++ |++|+|||+.+.+|+.+..-.. ....+.+ ......+++. ++++..+...
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip--~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v 214 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIP--EFRLPKETVVKKEIENIKKLGVKIETNVVV 214 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCC--CccCCccHHHHHHHHHHHHcCCEEEcCCEE
Confidence 3457999999999999999999986 9999999998877654421000 0011111 1111111221 2333322211
Q ss_pred eeecceEEecCc-eEEeccEEEEccCCC-CC---CCCchHHHHHHHHHHHH--------------HHhcCCeEEEEcCch
Q 022896 86 NITENEVLTAEG-RRVVYDYLVIATGHK-DP---VPKTRTERLNQYQAENQ--------------KIKSARSILIVGGGP 146 (290)
Q Consensus 86 ~~~~~~v~~~~~-~~~~~~~vi~a~G~~-~~---~p~~~~~~~~~~~~~~~--------------~~~~~~~v~iiG~g~ 146 (290)
. ..+..++. ..+.||+|++|||+. |. +|+.....+.....++. ....+++++|||+|+
T Consensus 215 --~-~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~ 291 (464)
T PRK12831 215 --G-KTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGN 291 (464)
T ss_pred --C-CcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcH
Confidence 1 12233332 235699999999984 54 45432222211111111 124679999999999
Q ss_pred hHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-e-eEEc--------
Q 022896 147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-D-TYLT-------- 216 (290)
Q Consensus 147 ~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~-~v~~-------- 216 (290)
+|+|+|..+.. .+.+|+++.+.... .+... ...+ +.+++.||++++++.+.++..++++ + .+.+
T Consensus 292 va~d~A~~l~r--~Ga~Vtlv~r~~~~--~m~a~-~~e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 365 (464)
T PRK12831 292 VAMDAARTALR--LGAEVHIVYRRSEE--ELPAR-VEEV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEP 365 (464)
T ss_pred HHHHHHHHHHH--cCCEEEEEeecCcc--cCCCC-HHHH-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCc
Confidence 99999999886 47889999986531 12111 1222 3467789999999998887654332 1 1211
Q ss_pred -C---------CCc--EEeccEEEEccCCCCCchhhcc-cccccccCCCCcEEecCC-ccccCCCCeEEeccccCcccc
Q 022896 217 -S---------TGD--TINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVS 281 (290)
Q Consensus 217 -~---------~g~--~~~~d~vv~a~G~~~~~~~l~~-~~~~~~~~~~g~~~v~~~-~~~~~~~~vfa~Gd~~~~~~~ 281 (290)
. +|+ ++++|.||+|+|..|+..++.. .++ .++++|++.+|++ ++| +.|+|||+|||+..+..
T Consensus 366 d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~T-s~pgVfAaGD~~~g~~~ 441 (464)
T PRK12831 366 DASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGL--KINKRGCIVADEETGLT-SKEGVFAGGDAVTGAAT 441 (464)
T ss_pred CCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCc--eECCCCcEEECCCCCcc-CCCCEEEeCCCCCCchH
Confidence 1 232 6999999999999998877765 455 5577899999998 777 89999999999986643
No 52
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.97 E-value=1.7e-30 Score=234.85 Aligned_cols=254 Identities=22% Similarity=0.287 Sum_probs=166.6
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEeeeeeee
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINI 87 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~ 87 (290)
...++|+|||||||||+||++|++ |++|+|||+.+.+|+.....- .....+.+......+++. ++++..+...
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~I--P~~Rlp~evL~~die~l~~~GVe~~~gt~V-- 612 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNII--PQFRIPAELIQHDIEFVKAHGVKFEFGCSP-- 612 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeec--ccccccHHHHHHHHHHHHHcCCEEEeCcee--
Confidence 456899999999999999999986 999999999988775543210 000111111111111111 2333332211
Q ss_pred ecceEEecCceEEeccEEEEccCCCC----CCCCch------HHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhh
Q 022896 88 TENEVLTAEGRRVVYDYLVIATGHKD----PVPKTR------TERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAV 157 (290)
Q Consensus 88 ~~~~v~~~~~~~~~~~~vi~a~G~~~----~~p~~~------~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~ 157 (290)
.+..++.....||+||+|||+.+ .+|+.. ...+..+.........+++|+|||+|++|+|+|..+..
T Consensus 613 ---di~le~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~R 689 (1019)
T PRK09853 613 ---DLTVEQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALR 689 (1019)
T ss_pred ---EEEhhhheeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHh
Confidence 12333444567999999999983 233321 11111111112223468999999999999999988765
Q ss_pred hCCC-CeEEEEecCcc-ccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCce-----------------eEEcCC
Q 022896 158 DFPE-KKVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-----------------TYLTST 218 (290)
Q Consensus 158 ~~~~-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-----------------~v~~~~ 218 (290)
. .+ .+|+++.+++. .++ ...+.+.+.+ +.||+++..+.+.++..+ +.+ .+...+
T Consensus 690 l-gGakeVTLVyRr~~~~MP----A~~eEle~Al-eeGVe~~~~~~p~~I~~d-G~l~~~~~~lg~~d~~Gr~~~v~tg~ 762 (1019)
T PRK09853 690 V-PGVEKVTVVYRRTKQEMP----AWREEYEEAL-EDGVEFKELLNPESFDAD-GTLTCRVMKLGEPDESGRRRPVETGE 762 (1019)
T ss_pred c-CCCceEEEEEccCccccc----ccHHHHHHHH-HcCCEEEeCCceEEEEcC-CcEEEEEEEeecccCCCceEEeeCCC
Confidence 3 33 58999998753 222 2233344433 579999998888777532 221 122334
Q ss_pred CcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896 219 GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 281 (290)
Q Consensus 219 g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~ 281 (290)
+.++++|.||+|+|..|+.+++...++ +++++|++.||+++++ +.|+|||+|||+..+..
T Consensus 763 ~~~I~aD~VIvAIG~~Pntelle~~GL--~ld~~G~I~VDetlqT-s~pgVFAaGD~a~Gp~t 822 (1019)
T PRK09853 763 TVTLEADTVITAIGEQVDTELLKANGI--PLDKKGWPVVDANGET-SLTNVYMIGDVQRGPST 822 (1019)
T ss_pred eEEEEeCEEEECCCCcCChhHHHhcCc--cccCCCCEEeCCCccc-CCCCEEEEeccccCchH
Confidence 457999999999999999999877665 4578899999999998 79999999999976643
No 53
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.97 E-value=2.4e-29 Score=228.47 Aligned_cols=252 Identities=22% Similarity=0.270 Sum_probs=161.4
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEeeeeeeee
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINIT 88 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~ 88 (290)
..+||+|||||||||+||++|++ |++|+|||+++.+|+.....-. ....+.+......+++. ++++..+. +
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP--~~rlp~e~l~~~ie~l~~~GVe~~~g~----~ 609 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIP--EFRISAESIQKDIELVKFHGVEFKYGC----S 609 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeeccc--ccCCCHHHHHHHHHHHHhcCcEEEEec----c
Confidence 46899999999999999999986 9999999999887755422100 00111111111111111 23333221 1
Q ss_pred cceEEecCceEEeccEEEEccCCCCC----CCCchH---HHHHHHHHHH---HHHhcCCeEEEEcCchhHHHHHHHHhhh
Q 022896 89 ENEVLTAEGRRVVYDYLVIATGHKDP----VPKTRT---ERLNQYQAEN---QKIKSARSILIVGGGPTGVELAGEIAVD 158 (290)
Q Consensus 89 ~~~v~~~~~~~~~~~~vi~a~G~~~~----~p~~~~---~~~~~~~~~~---~~~~~~~~v~iiG~g~~~~~~a~~l~~~ 158 (290)
. .+...+.....||+|++|||+.+. +|+... ..++...... .....+++|+|||+|++|+|+|..+...
T Consensus 610 ~-d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl 688 (1012)
T TIGR03315 610 P-DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRV 688 (1012)
T ss_pred c-ceEhhhhhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHh
Confidence 1 122333345569999999999832 333211 1111111111 1234689999999999999999987653
Q ss_pred CCC-CeEEEEecCcc-ccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeE---------------EcCCCc-
Q 022896 159 FPE-KKVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY---------------LTSTGD- 220 (290)
Q Consensus 159 ~~~-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v---------------~~~~g~- 220 (290)
.+ .+|+++.+... .++ .....+.+.+ +.||+++....+.++. ++.+.+ ...+|+
T Consensus 689 -~Ga~kVtLVyRr~~~~Mp----a~~eEl~~al-eeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Gee 760 (1012)
T TIGR03315 689 -PGVEKVTVVYRRTKRYMP----ASREELEEAL-EDGVDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGET 760 (1012)
T ss_pred -CCCceEEEEEccCccccc----cCHHHHHHHH-HcCCEEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecCCCe
Confidence 34 58999998753 222 2223343333 5799999988776665 222211 112343
Q ss_pred -EEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCC-ccccCCCCeEEeccccCcccc
Q 022896 221 -TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVS 281 (290)
Q Consensus 221 -~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~-~~~~~~~~vfa~Gd~~~~~~~ 281 (290)
++++|.||+|+|..|+..+++..++ +++.+|++.+|++ +++ +.|+|||+|||+..+..
T Consensus 761 ~~I~aD~VIvAiG~~Pnt~lle~~GL--~ld~~G~I~VD~~~~~T-s~pgVFAaGD~a~GP~t 820 (1012)
T TIGR03315 761 VDLPADTVIAAVGEQVDTDLLQKNGI--PLDEYGWPVVNQATGET-NITNVFVIGDANRGPAT 820 (1012)
T ss_pred EEEEeCEEEEecCCcCChHHHHhcCc--ccCCCCCEEeCCCCCcc-CCCCEEEEeCcCCCccH
Confidence 6899999999999999999877655 5678899999986 676 79999999999976653
No 54
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=3.7e-29 Score=229.19 Aligned_cols=256 Identities=14% Similarity=0.181 Sum_probs=165.5
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcC-Cccccccccccccccc--cceEEeeeeee
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE-PSFGKRSVINHTDYLV--NGRIVASPAIN 86 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~v~~ 86 (290)
...++|+|||||||||+||++|++ |++|+|||+.+.+|+... ..+. ...+.+......+.+. ++++.......
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~---yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG 380 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR---YGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG 380 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE---ccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec
Confidence 347999999999999999999986 999999999988775432 1111 1111111111111111 33333322211
Q ss_pred eecceEEecCceEEeccEEEEccCCC-C---CCCCchHHHHHHHHHHHHH----------------HhcCCeEEEEcCch
Q 022896 87 ITENEVLTAEGRRVVYDYLVIATGHK-D---PVPKTRTERLNQYQAENQK----------------IKSARSILIVGGGP 146 (290)
Q Consensus 87 ~~~~~v~~~~~~~~~~~~vi~a~G~~-~---~~p~~~~~~~~~~~~~~~~----------------~~~~~~v~iiG~g~ 146 (290)
..+.+++.....||+|++|||+. | .+|+.....++....++.. ...+++|+|||+|+
T Consensus 381 ---~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~ 457 (944)
T PRK12779 381 ---KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGN 457 (944)
T ss_pred ---cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCH
Confidence 13555555556899999999995 4 3565332222221111110 12579999999999
Q ss_pred hHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc--e-eEEc-------
Q 022896 147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--D-TYLT------- 216 (290)
Q Consensus 147 ~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~-~v~~------- 216 (290)
+|+|+|..+.. .+.+|+++.+++.. .+ +.....+.+ ..+.|+++++.+.++++..++++ + .+.+
T Consensus 458 tA~D~A~ta~R--~Ga~Vtlv~rr~~~--~m-pa~~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~ 531 (944)
T PRK12779 458 TAMDAARTAKR--LGGNVTIVYRRTKS--EM-PARVEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGE 531 (944)
T ss_pred HHHHHHHHHHH--cCCEEEEEEecCcc--cc-cccHHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEecc
Confidence 99999999885 47789999887531 11 122233333 34679999999888887654321 1 1110
Q ss_pred --C--------CC--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCC-ccccCCCCeEEeccccCccc
Q 022896 217 --S--------TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRV 280 (290)
Q Consensus 217 --~--------~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~-~~~~~~~~vfa~Gd~~~~~~ 280 (290)
. +| .++++|.||+|+|..|+.. +.....+++++++|.+.+|+. ++| +.|+|||+|||+.++.
T Consensus 532 ~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~-l~~~~~gle~~~~G~I~vd~~~~~T-s~pgVFAaGD~~~G~~ 606 (944)
T PRK12779 532 PDKSGRRSPKPTGEIERVPVDLVIMALGNTANPI-MKDAEPGLKTNKWGTIEVEKGSQRT-SIKGVYSGGDAARGGS 606 (944)
T ss_pred ccCcCceeeecCCceEEEECCEEEEcCCcCCChh-hhhcccCceECCCCCEEECCCCCcc-CCCCEEEEEcCCCChH
Confidence 1 23 3689999999999999754 333334456778899999974 666 7999999999998764
No 55
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.97 E-value=1.6e-29 Score=218.40 Aligned_cols=256 Identities=20% Similarity=0.218 Sum_probs=163.9
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEeeeeeee
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINI 87 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~ 87 (290)
...++|+|||||++||++|.+|++ |++|+|||+.+.+++.+... ........+......+++. ++++......
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g--ip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v-- 213 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG--IPEFRLPKDIVDREVERLLKLGVEIRTNTEV-- 213 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc--CCCccCCHHHHHHHHHHHHHcCCEEEeCCEE--
Confidence 446899999999999999999976 99999999998776443210 0000011111111112221 2334333221
Q ss_pred ecceEEecCceEEeccEEEEccCCC-CC---CCCchHHHHHHHHHHHH---------HHhcCCeEEEEcCchhHHHHHHH
Q 022896 88 TENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTERLNQYQAENQ---------KIKSARSILIVGGGPTGVELAGE 154 (290)
Q Consensus 88 ~~~~v~~~~~~~~~~~~vi~a~G~~-~~---~p~~~~~~~~~~~~~~~---------~~~~~~~v~iiG~g~~~~~~a~~ 154 (290)
. ..+...+. .+.||+||+|||+. +. +|+.....+......+. ....+++++|+|+|.+|+|+|..
T Consensus 214 ~-~~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~ 291 (457)
T PRK11749 214 G-RDITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAART 291 (457)
T ss_pred C-CccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHH
Confidence 1 11222222 37899999999986 43 34422211111111111 12358999999999999999999
Q ss_pred HhhhCCCC-eEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc---eeEE---------------
Q 022896 155 IAVDFPEK-KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS---DTYL--------------- 215 (290)
Q Consensus 155 l~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~---~~v~--------------- 215 (290)
+.. .+. +|+++.+.+... +.. .....+.+++.||++++++.+.++..++++ +.+.
T Consensus 292 l~~--~G~~~Vtlv~~~~~~~--~~~--~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~ 365 (457)
T PRK11749 292 AKR--LGAESVTIVYRRGREE--MPA--SEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRV 365 (457)
T ss_pred HHH--cCCCeEEEeeecCccc--CCC--CHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCccc
Confidence 885 354 899999865421 111 122346678899999999999888755543 3332
Q ss_pred --cCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecC-CccccCCCCeEEeccccCccc
Q 022896 216 --TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIRV 280 (290)
Q Consensus 216 --~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~-~~~~~~~~~vfa~Gd~~~~~~ 280 (290)
..+++++++|.||+|+|..|+..++.. ..++.++++|++.+|+ ++++ +.|+|||+|||+..+.
T Consensus 366 ~~~g~~~~i~~D~vi~a~G~~p~~~l~~~-~~gl~~~~~g~i~vd~~~~~T-s~~~VfA~GD~~~~~~ 431 (457)
T PRK11749 366 PIEGSEFTLPADLVIKAIGQTPNPLILST-TPGLELNRWGTIIADDETGRT-SLPGVFAGGDIVTGAA 431 (457)
T ss_pred CCCCceEEEECCEEEECccCCCCchhhcc-ccCccCCCCCCEEeCCCCCcc-CCCCEEEeCCcCCCch
Confidence 112347999999999999998766542 1223567889999998 6676 7999999999997643
No 56
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=2.3e-29 Score=210.52 Aligned_cols=259 Identities=19% Similarity=0.127 Sum_probs=163.5
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccc-ccccccc-cceEEee-eeeee
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVI-NHTDYLV-NGRIVAS-PAINI 87 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~-~v~~~ 87 (290)
..++|+|||||++|+++|.+|++ |++|++||+.+.+++.+..... ......+... ...++.. ++.+..+ .+...
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~--~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~ 94 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIP--EFRIPIERVREGVKELEEAGVVFHTRTKVCCG 94 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCc--ccccCHHHHHHHHHHHHhCCeEEecCcEEeec
Confidence 45899999999999999999976 9999999999887644321100 0000001010 1111111 2333322 22221
Q ss_pred ec------c-----eEEecCceEEeccEEEEccCCC-CC---CCCchHHHHHHHHHHHH-------------H--HhcCC
Q 022896 88 TE------N-----EVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTERLNQYQAENQ-------------K--IKSAR 137 (290)
Q Consensus 88 ~~------~-----~v~~~~~~~~~~~~vi~a~G~~-~~---~p~~~~~~~~~~~~~~~-------------~--~~~~~ 137 (290)
+. + .+.. ++..+.||+||+|||+. |. +|+.....+........ . ...++
T Consensus 95 ~~~~~~~~~~~~~~~~~~-~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 173 (352)
T PRK12770 95 EPLHEEEGDEFVERIVSL-EELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGK 173 (352)
T ss_pred cccccccccccccccCCH-HHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhccccccccccccccCCC
Confidence 11 0 0111 12246899999999984 44 44422211111111100 0 11268
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCe-EEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEE-
Q 022896 138 SILIVGGGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL- 215 (290)
Q Consensus 138 ~v~iiG~g~~~~~~a~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~- 215 (290)
+++|+|+|.+++++|..+..+ +.+ |+++.+.+.... .......+.++++||++++++.+.+++.+++...+.
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~--g~~~Vtvi~~~~~~~~----~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~ 247 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLL--GAEKVYLAYRRTINEA----PAGKYEIERLIARGVEFLELVTPVRIIGEGRVEGVEL 247 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCeEEEEeecchhhC----CCCHHHHHHHHHcCCEEeeccCceeeecCCcEeEEEE
Confidence 999999999999999998763 554 999987654211 122344566889999999999987776543222222
Q ss_pred -------------------cCCCcEEeccEEEEccCCCCCchhhcc-cccccccCCCCcEEecCCccccCCCCeEEeccc
Q 022896 216 -------------------TSTGDTINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI 275 (290)
Q Consensus 216 -------------------~~~g~~~~~d~vv~a~G~~~~~~~l~~-~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~ 275 (290)
..+++.+++|.+++++|..|+..+..+ .++ .++++|++.+|+++++ +.|+||++|||
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~--~~~~~g~i~vd~~~~t-~~~~vyaiGD~ 324 (352)
T PRK12770 248 AKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGI--ELNRKGEIVVDEKHMT-SREGVFAAGDV 324 (352)
T ss_pred EEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCc--eecCCCcEeeCCCccc-CCCCEEEEccc
Confidence 122347999999999999998776655 444 5677899999999997 79999999999
Q ss_pred cCccccc
Q 022896 276 TDIRVSA 282 (290)
Q Consensus 276 ~~~~~~~ 282 (290)
++.+...
T Consensus 325 ~~~~~~~ 331 (352)
T PRK12770 325 VTGPSKI 331 (352)
T ss_pred ccCcchH
Confidence 9865433
No 57
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=2.5e-29 Score=228.55 Aligned_cols=257 Identities=19% Similarity=0.212 Sum_probs=164.1
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcC-Cccccccccccccccc--cceEEeeeeee
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE-PSFGKRSVINHTDYLV--NGRIVASPAIN 86 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~v~~ 86 (290)
...+||+|||||||||+||++|++ |++|+|||+.+.+++.+.. .+. ...+.+......+++. ++++..+...
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~---gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v- 504 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY---GIPEFRLPKKIVDVEIENLKKLGVKFETDVIV- 504 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee---cCCCCCCCHHHHHHHHHHHHHCCCEEECCCEE-
Confidence 346899999999999999999976 9999999998776644321 111 1111111111111111 3344332221
Q ss_pred eecceEEecCceEEeccEEEEccCCC-CC---CCCchHHHH---HHHHHHHH-----------HHhcCCeEEEEcCchhH
Q 022896 87 ITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTERL---NQYQAENQ-----------KIKSARSILIVGGGPTG 148 (290)
Q Consensus 87 ~~~~~v~~~~~~~~~~~~vi~a~G~~-~~---~p~~~~~~~---~~~~~~~~-----------~~~~~~~v~iiG~g~~~ 148 (290)
. ..+.+++.....||+|++|||+. |. +|+.....+ .++..... ....+++|+|||+|++|
T Consensus 505 -~-~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a 582 (752)
T PRK12778 505 -G-KTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTA 582 (752)
T ss_pred -C-CcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHH
Confidence 1 12344444456799999999984 54 454221111 11111110 12357899999999999
Q ss_pred HHHHHHHhhhCCCCe-EEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEc---------
Q 022896 149 VELAGEIAVDFPEKK-VTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLT--------- 216 (290)
Q Consensus 149 ~~~a~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~--------- 216 (290)
+|+|..+.. .+.+ |+++.+.+.. .++.. ...+ +.+++.||++++++.+.++..++++ ..+.+
T Consensus 583 ~d~A~~~~r--~Ga~~Vtlv~r~~~~--~~~~~-~~e~-~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~ 656 (752)
T PRK12778 583 MDSARTAKR--LGAERVTIVYRRSEE--EMPAR-LEEV-KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPD 656 (752)
T ss_pred HHHHHHHHH--cCCCeEEEeeecCcc--cCCCC-HHHH-HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcC
Confidence 999998875 4665 9999987541 11111 1122 3477889999999988777654332 11221
Q ss_pred CC---------C--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896 217 ST---------G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 281 (290)
Q Consensus 217 ~~---------g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~ 281 (290)
.+ | .++++|.||+|+|..|+..++... .++.++++|++.+|++++| +.|+|||+|||+..+..
T Consensus 657 ~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~-~gl~~~~~G~i~vd~~~~T-s~~gVfA~GD~~~g~~~ 730 (752)
T PRK12778 657 ASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSI-PGLELNRKGTIVVDEEMQS-SIPGIYAGGDIVRGGAT 730 (752)
T ss_pred CCCCCCceecCCCeEEEECCEEEECcCCCCCccccccc-cCceECCCCCEEeCCCCCC-CCCCEEEeCCccCCcHH
Confidence 11 2 268999999999999987665442 1335678899999999887 79999999999987643
No 58
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.96 E-value=4.6e-28 Score=208.14 Aligned_cols=248 Identities=22% Similarity=0.365 Sum_probs=179.0
Q ss_pred HHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCccc--cccccc-cccccc--cceE-Eeeeeeeeecc--eEEec
Q 022896 27 LVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG--KRSVIN-HTDYLV--NGRI-VASPAINITEN--EVLTA 95 (290)
Q Consensus 27 ~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~--~~~~-~~~~v~~~~~~--~v~~~ 95 (290)
+||.+|++ .++|+|||+++.+.+.+..+......... ...... ..+++. ++++ ..+.|+.+++. .+.+.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~ 80 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVR 80 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEE
Confidence 47888864 68999999999876554333332222111 111111 112211 4555 36788888855 34443
Q ss_pred C---ceEEe--ccEEEEccCCCCCCCCch---------HHHHHHHHHHHHHH--hcCCeEEEEcCchhHHHHHHHHhhhC
Q 022896 96 E---GRRVV--YDYLVIATGHKDPVPKTR---------TERLNQYQAENQKI--KSARSILIVGGGPTGVELAGEIAVDF 159 (290)
Q Consensus 96 ~---~~~~~--~~~vi~a~G~~~~~p~~~---------~~~~~~~~~~~~~~--~~~~~v~iiG~g~~~~~~a~~l~~~~ 159 (290)
+ +..+. ||+||+|||++|..|+.. ...+.+.......+ ..+++++|+|+|..|+++|..+..
T Consensus 81 ~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~-- 158 (427)
T TIGR03385 81 NNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRE-- 158 (427)
T ss_pred ECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHh--
Confidence 2 34677 999999999997654411 11223333333333 357899999999999999999986
Q ss_pred CCCeEEEEecCccc-cccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896 160 PEKKVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD 238 (290)
Q Consensus 160 ~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~ 238 (290)
.+.+|+++.+.+.+ .+.+++++...+.+.+++.||+++.++.++++..++. . +.+.+|+++++|.+++|+|.+|+.+
T Consensus 159 ~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 159 RGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIKPNSE 236 (427)
T ss_pred CCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCccCCHH
Confidence 58899999998877 4567778888899999999999999999988865433 2 4556788999999999999999999
Q ss_pred hhcccccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896 239 WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 281 (290)
Q Consensus 239 ~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~ 281 (290)
+++..++ .++++|++.||+++++ +.|+|||+|||+..+..
T Consensus 237 ~l~~~gl--~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~~~ 276 (427)
T TIGR03385 237 LAKDSGL--KLGETGAIWVNEKFQT-SVPNIYAAGDVAESHNI 276 (427)
T ss_pred HHHhcCc--ccCCCCCEEECCCcEe-CCCCEEEeeeeEEeeec
Confidence 9887666 5578899999999998 79999999999986543
No 59
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.96 E-value=3.1e-28 Score=195.94 Aligned_cols=265 Identities=32% Similarity=0.429 Sum_probs=193.2
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc----ccceEEeeeee
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL----VNGRIVASPAI 85 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~ 85 (290)
..+++|+|+|+|.+|.+++..|.. -++|+|+++++++-+.|.......+.-.......+..... ....++.....
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~ 132 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAECT 132 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecccE
Confidence 457899999999999999999975 8999999999998877765444433332222222222221 13466777888
Q ss_pred eeecc--e----EEecCc----eEEeccEEEEccCCCC---CCCC-----chHHHHHHHHHHHHH---------------
Q 022896 86 NITEN--E----VLTAEG----RRVVYDYLVIATGHKD---PVPK-----TRTERLNQYQAENQK--------------- 132 (290)
Q Consensus 86 ~~~~~--~----v~~~~~----~~~~~~~vi~a~G~~~---~~p~-----~~~~~~~~~~~~~~~--------------- 132 (290)
.+|++ . ..+.++ ..+.||++|+|+|+.+ .+|+ .....+++.......
T Consensus 133 ~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~ 212 (491)
T KOG2495|consen 133 KIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSD 212 (491)
T ss_pred eecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCCh
Confidence 88876 2 233344 4689999999999985 4665 122333333322111
Q ss_pred --HhcCCeEEEEcCchhHHHHHHHHhhh--------C----CCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEe
Q 022896 133 --IKSARSILIVGGGPTGVELAGEIAVD--------F----PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL 198 (290)
Q Consensus 133 --~~~~~~v~iiG~g~~~~~~a~~l~~~--------~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~ 198 (290)
.+.--+++|||||++|+|+|.+|... + ...+|++++..+.++..|+..+.....+.+.+.||++..
T Consensus 213 eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~ 292 (491)
T KOG2495|consen 213 EERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDT 292 (491)
T ss_pred HHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeec
Confidence 11234789999999999999988753 1 246899999999999999999999999999999999999
Q ss_pred CceEeecccCCCceeEEcCCCc--EEeccEEEEccCCCCCchhhcccccccccCCCC--cEEecCCccccCCCCeEEecc
Q 022896 199 GERVNLDSVSEGSDTYLTSTGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHG--MLMVDENLRVKGQKNIFAIGD 274 (290)
Q Consensus 199 ~~~v~~i~~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g--~~~v~~~~~~~~~~~vfa~Gd 274 (290)
++.|+. +++..+.+...+|+ +|++..+|++||..|. ++.....-+ .++.+ .+.+|+.+|..+.+||||+||
T Consensus 293 ~t~Vk~--V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~--i~e~~rr~L~vDE~LrV~G~~nvfAiGD 367 (491)
T KOG2495|consen 293 GTMVKK--VTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQ--IDEQGRRGLAVDEWLRVKGVKNVFAIGD 367 (491)
T ss_pred ccEEEe--ecCcEEEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhc--CCccCceeeeeeceeeccCcCceEEecc
Confidence 999954 44556666666774 7999999999999874 455554332 23445 899999999999999999999
Q ss_pred ccCccc
Q 022896 275 ITDIRV 280 (290)
Q Consensus 275 ~~~~~~ 280 (290)
|++.+.
T Consensus 368 ca~~~~ 373 (491)
T KOG2495|consen 368 CADQRG 373 (491)
T ss_pred cccccc
Confidence 995443
No 60
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.96 E-value=4.7e-28 Score=209.52 Aligned_cols=259 Identities=17% Similarity=0.167 Sum_probs=161.3
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCC-ccccccccccccccc--cceEEeeeeee
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYLV--NGRIVASPAIN 86 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~v~~ 86 (290)
...++|+|||||++|+++|.+|++ |++|+|||+.+.+++.+.. .+.. ....+......+++. ++++..+....
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~---gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 217 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRY---GIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVG 217 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeee---cCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEC
Confidence 346899999999999999999976 9999999999887654321 1100 111111111111111 23333332221
Q ss_pred eecceEEecCceEEeccEEEEccCCC-CC---CCCchHHHHHHHHHHH--------H------HHhcCCeEEEEcCchhH
Q 022896 87 ITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTERLNQYQAEN--------Q------KIKSARSILIVGGGPTG 148 (290)
Q Consensus 87 ~~~~~v~~~~~~~~~~~~vi~a~G~~-~~---~p~~~~~~~~~~~~~~--------~------~~~~~~~v~iiG~g~~~ 148 (290)
.+ +.. +.....||++++|+|+. +. +|+.....+......+ . ....+++++|||+|++|
T Consensus 218 ~~---~~~-~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g 293 (471)
T PRK12810 218 KD---ITA-EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTG 293 (471)
T ss_pred Cc---CCH-HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHH
Confidence 11 111 11235799999999997 43 4553222221111110 0 12357999999999999
Q ss_pred HHHHHHHhhhCCCCeEEEEecCccccccC-C----hhHHH-HHHHHHHhCCcEEEeCceEeecccCCCcee-EE-----c
Q 022896 149 VELAGEIAVDFPEKKVTLVHKGSRLLEFI-G----PKAGD-KTRDWLISKKVDVKLGERVNLDSVSEGSDT-YL-----T 216 (290)
Q Consensus 149 ~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-~----~~~~~-~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~-v~-----~ 216 (290)
+|+|..+... ...+|+.+...+...... . +.+.. ...+.+++.|+++++++.++++..+++.+. +. .
T Consensus 294 ~e~A~~~~~~-ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~ 372 (471)
T PRK12810 294 MDCVGTAIRQ-GAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTEL 372 (471)
T ss_pred HHHHHHHHHc-CCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEe
Confidence 9999877652 344788665443221111 0 01111 134567788999999999988865444422 22 2
Q ss_pred CC-------C--cEEeccEEEEccCCCCCc-hhhcccccccccCCCCcEEec-CCccccCCCCeEEeccccCccc
Q 022896 217 ST-------G--DTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVD-ENLRVKGQKNIFAIGDITDIRV 280 (290)
Q Consensus 217 ~~-------g--~~~~~d~vv~a~G~~~~~-~~l~~~~~~~~~~~~g~~~v~-~~~~~~~~~~vfa~Gd~~~~~~ 280 (290)
.+ | +++++|.||+|+|..|+. .++...++ +++++|++.+| +++++ +.|+||++|||++.+.
T Consensus 373 ~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl--~~~~~g~i~vd~~~~~T-s~~gVfa~GD~~~g~~ 444 (471)
T PRK12810 373 GEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGV--ELDERGRVAAPDNAYQT-SNPKVFAAGDMRRGQS 444 (471)
T ss_pred cCCCccccCCceEEEECCEEEECcCcCCCchhhccccCc--ccCCCCCEEeCCCcccC-CCCCEEEccccCCCch
Confidence 12 2 479999999999999874 47766554 56788999998 68887 8999999999998654
No 61
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.7e-29 Score=193.32 Aligned_cols=267 Identities=18% Similarity=0.159 Sum_probs=188.8
Q ss_pred cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC--Ccccchhh---------------------------------
Q 022896 10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE--YFEITWAS--------------------------------- 53 (290)
Q Consensus 10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~--~~~~~~~~--------------------------------- 53 (290)
.+.+||++|||||.+||+||.+++. |.+|.++|-=. ..|..|..
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW 95 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGW 95 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCC
Confidence 3457999999999999999999987 99999998322 12222210
Q ss_pred --hhhhcCCcc-----------cccccccccc-ccccceEEeeeeeeeecceEEe--cCc--eEEeccEEEEccCCCCCC
Q 022896 54 --LRAMVEPSF-----------GKRSVINHTD-YLVNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDPV 115 (290)
Q Consensus 54 --~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~v~~--~~~--~~~~~~~vi~a~G~~~~~ 115 (290)
....+.+++ ..-.+....+ ..+.+..++...++++++++.. .++ +.++++.+++|||.+|.+
T Consensus 96 ~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrY 175 (503)
T KOG4716|consen 96 NVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRY 175 (503)
T ss_pred CCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCCC
Confidence 000011111 0000000000 0112345667777777775433 223 468999999999999877
Q ss_pred CCchH--HHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCC
Q 022896 116 PKTRT--ERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 193 (290)
Q Consensus 116 p~~~~--~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 193 (290)
|+..+ +.-...+.+......+.+.+|+|+++.++|+|.+|.- .+.+++++.|+ .+++.|+.++.+.+.+.++++|
T Consensus 176 p~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~g--fg~~vtVmVRS-I~LrGFDqdmae~v~~~m~~~G 252 (503)
T KOG4716|consen 176 PDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKG--FGYDVTVMVRS-ILLRGFDQDMAELVAEHMEERG 252 (503)
T ss_pred CCCCCceeeeecccccccccCCCCceEEEccceeeeehhhhHhh--cCCCcEEEEEE-eecccccHHHHHHHHHHHHHhC
Confidence 66222 1223344455555677889999999999999999995 78999998876 6778999999999999999999
Q ss_pred cEEEeCceEeecccCCCc-eeEE---cCCC--cEEeccEEEEccCCCCCchhhcccccccccCC-CCcEEecCCccccCC
Q 022896 194 VDVKLGERVNLDSVSEGS-DTYL---TSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDT-HGMLMVDENLRVKGQ 266 (290)
Q Consensus 194 i~~~~~~~v~~i~~~~~~-~~v~---~~~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~-~g~~~v~~~~~~~~~ 266 (290)
++|...+.+..++..+++ ..+. +..+ .+-++|.|++|+|..+..+-+.....++..++ .|.|++|+.-++ +.
T Consensus 253 ikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t-~v 331 (503)
T KOG4716|consen 253 IKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT-NV 331 (503)
T ss_pred CceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhc-CC
Confidence 999999888888765554 3332 2222 25679999999999998887777777777755 488999998887 89
Q ss_pred CCeEEeccccCccc
Q 022896 267 KNIFAIGDITDIRV 280 (290)
Q Consensus 267 ~~vfa~Gd~~~~~~ 280 (290)
|.|||+||+.....
T Consensus 332 p~vyAvGDIl~~kp 345 (503)
T KOG4716|consen 332 PYVYAVGDILEDKP 345 (503)
T ss_pred CceEEecceecCCc
Confidence 99999999987543
No 62
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.96 E-value=2e-28 Score=218.62 Aligned_cols=255 Identities=18% Similarity=0.187 Sum_probs=162.5
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEeeeeeeee
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINIT 88 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~ 88 (290)
..++|+||||||+||++|++|++ |++|+|||+++.+|+.+.... .....+........+.+. ++++..+.+...+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gi--p~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~d 269 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGI--PRFRLPESVIDADIAPLRAMGAEFRFNTVFGRD 269 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecC--CCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCc
Confidence 45899999999999999999986 999999999988775543110 000111111111111111 2333322221111
Q ss_pred cceEEecCceEEeccEEEEccCCCC----CCCCchHHHHHHHHHHHH------HHhcCCeEEEEcCchhHHHHHHHHhhh
Q 022896 89 ENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRTERLNQYQAENQ------KIKSARSILIVGGGPTGVELAGEIAVD 158 (290)
Q Consensus 89 ~~~v~~~~~~~~~~~~vi~a~G~~~----~~p~~~~~~~~~~~~~~~------~~~~~~~v~iiG~g~~~~~~a~~l~~~ 158 (290)
+...+. ...||.|++|||+.+ .+|+.....+......+. ....+++++|||+|++++++|..+...
T Consensus 270 ---v~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~ 345 (652)
T PRK12814 270 ---ITLEEL-QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRL 345 (652)
T ss_pred ---cCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHc
Confidence 112121 235999999999973 345432222211111111 234689999999999999999988752
Q ss_pred CCCCeEEEEecCcc-ccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEE---c---------------CCC
Q 022896 159 FPEKKVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL---T---------------STG 219 (290)
Q Consensus 159 ~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~---~---------------~~g 219 (290)
...+|+++.+... .++.. ...+.+ +.+.||++++++.+.++..+++...+. . .+|
T Consensus 346 -Ga~~Vtlv~r~~~~~mpa~----~~ei~~-a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g 419 (652)
T PRK12814 346 -GAESVTILYRRTREEMPAN----RAEIEE-ALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEG 419 (652)
T ss_pred -CCCeEEEeeecCcccCCCC----HHHHHH-HHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCC
Confidence 3357999998754 22222 223333 345799999999887776554442221 1 123
Q ss_pred c--EEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCC-ccccCCCCeEEeccccCcccc
Q 022896 220 D--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVS 281 (290)
Q Consensus 220 ~--~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~-~~~~~~~~vfa~Gd~~~~~~~ 281 (290)
+ ++++|.||+++|..|+..++...++ .++.+|++.+|++ +++ +.|+|||+||++..+..
T Consensus 420 ~~~~i~~D~VI~AiG~~p~~~ll~~~gl--~~~~~G~I~vd~~~~~T-s~pgVfA~GDv~~g~~~ 481 (652)
T PRK12814 420 SEFTLQADTVISAIGQQVDPPIAEAAGI--GTSRNGTVKVDPETLQT-SVAGVFAGGDCVTGADI 481 (652)
T ss_pred ceEEEECCEEEECCCCcCCcccccccCc--cccCCCcEeeCCCCCcC-CCCCEEEcCCcCCCchH
Confidence 2 6899999999999999888877665 5577899999985 555 89999999999987654
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.96 E-value=9.4e-28 Score=221.86 Aligned_cols=256 Identities=16% Similarity=0.135 Sum_probs=160.4
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCC-ccccccccccccccc--cceEEeeeeeee
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYLV--NGRIVASPAINI 87 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~v~~~ 87 (290)
..++|+|||||||||+||++|++ |++|+|||+.+..|+.... .+.. ..+.+......+++. ++++..+.+...
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~---gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~ 505 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY---GIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK 505 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec---cCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC
Confidence 46899999999999999999976 9999999999877643221 1110 111111111111111 344443332211
Q ss_pred ecceEEecCce-EEeccEEEEccCCC-C---CCCCchHHHHHHHHHHHH---------------HHhcCCeEEEEcCchh
Q 022896 88 TENEVLTAEGR-RVVYDYLVIATGHK-D---PVPKTRTERLNQYQAENQ---------------KIKSARSILIVGGGPT 147 (290)
Q Consensus 88 ~~~~v~~~~~~-~~~~~~vi~a~G~~-~---~~p~~~~~~~~~~~~~~~---------------~~~~~~~v~iiG~g~~ 147 (290)
.+...+.. ...||+||+|||+. | .+|+.....+.....++. ....+++|+|||+|++
T Consensus 506 ---~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~t 582 (1006)
T PRK12775 506 ---TFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNT 582 (1006)
T ss_pred ---ccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHH
Confidence 12222211 24699999999995 4 455533222222222111 1235799999999999
Q ss_pred HHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEc---------
Q 022896 148 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLT--------- 216 (290)
Q Consensus 148 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~--------- 216 (290)
|+++|..+... ....|+++.+..... .. ..... .+.+++.||++++++.+.++..++++ ..+.+
T Consensus 583 A~D~A~~a~rl-Ga~~Vtiv~rr~~~e--m~-a~~~e-~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d 657 (1006)
T PRK12775 583 AMDCLRVAKRL-GAPTVRCVYRRSEAE--AP-ARIEE-IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPD 657 (1006)
T ss_pred HHHHHHHHHHc-CCCEEEEEeecCccc--CC-CCHHH-HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccC
Confidence 99999887752 234688887654321 11 11111 24577889999999998887654332 11211
Q ss_pred C--------CC--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecC-----CccccCCCCeEEeccccCccc
Q 022896 217 S--------TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-----NLRVKGQKNIFAIGDITDIRV 280 (290)
Q Consensus 217 ~--------~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~-----~~~~~~~~~vfa~Gd~~~~~~ 280 (290)
. +| .++++|.|++|+|..|+..++... .++.++.+|.+.+|+ +++| ++|+|||+||++.++.
T Consensus 658 ~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~-~gl~l~~~G~I~vd~~~v~~~~~T-s~pgVFAaGDv~~G~~ 734 (1006)
T PRK12775 658 EKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQST-PGLALNKWGNIAADDGKLESTQST-NLPGVFAGGDIVTGGA 734 (1006)
T ss_pred CCCCccccCCCceEEEEcCEEEECCCcCCChhhhhcc-CCcccCCCCcEEeCCCccccCcCC-CCCCEEEecCcCCCcc
Confidence 1 22 268999999999999987765542 123567889999997 5676 8999999999998764
No 64
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.95 E-value=2.6e-27 Score=202.65 Aligned_cols=261 Identities=22% Similarity=0.296 Sum_probs=210.7
Q ss_pred CCcEEEEcCChHHHHHHHHhcc----CCcEEEEcCCCCcccchhhhhhhcCCcc-cccccccccccccc--ceE-Eeeee
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF----SADVTLIDPKEYFEITWASLRAMVEPSF-GKRSVINHTDYLVN--GRI-VASPA 84 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~----g~~v~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~-~~~~v 84 (290)
+.+++|||.|++|..+..++.+ -+++++|-..++..+.-..++..+.+.. .++....-.+|+.. +.+ ...++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 4789999999999999988843 5899999999888777666666655532 23333444455543 333 46788
Q ss_pred eeeecc--eEEecCceEEeccEEEEccCCCCCCCC---------chHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHH
Q 022896 85 INITEN--EVLTAEGRRVVYDYLVIATGHKDPVPK---------TRTERLNQYQAENQKIKSARSILIVGGGPTGVELAG 153 (290)
Q Consensus 85 ~~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~---------~~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~ 153 (290)
+.+++. .|.++.|..+.||.+++|||+.|++|+ ...+.+.+...+...-+..++.+|||+|.-|+|+|.
T Consensus 83 ~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~ 162 (793)
T COG1251 83 IQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAAR 162 (793)
T ss_pred EEeccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHH
Confidence 999876 588889999999999999999976554 223455556666665556778899999999999999
Q ss_pred HHhhhCCCCeEEEEecCccccc-cCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccC
Q 022896 154 EIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG 232 (290)
Q Consensus 154 ~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G 232 (290)
.|.+ .+.++++++-.+.++. .+++.....++..+++.|++++.+...+++...+....+.+++|..+++|.||+|.|
T Consensus 163 ~L~~--~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~G 240 (793)
T COG1251 163 GLKD--LGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVG 240 (793)
T ss_pred HHHh--CCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecc
Confidence 9997 5889999988877655 477788888999999999999999998888776666889999999999999999999
Q ss_pred CCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896 233 KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 280 (290)
Q Consensus 233 ~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~ 280 (290)
.+|+..+....++.+ +. .|.||.++|| +.|+|||+|.|+....
T Consensus 241 IrPn~ela~~aGlav--nr--GIvvnd~mqT-sdpdIYAvGEcae~~g 283 (793)
T COG1251 241 IRPNDELAKEAGLAV--NR--GIVVNDYMQT-SDPDIYAVGECAEHRG 283 (793)
T ss_pred cccccHhHHhcCcCc--CC--Ceeecccccc-cCCCeeehhhHHHhcC
Confidence 999999999999854 33 7999999999 8999999999987643
No 65
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4e-27 Score=173.82 Aligned_cols=256 Identities=18% Similarity=0.231 Sum_probs=177.9
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc----ccchhhhhhh-cCCccccc-----ccccccccc--ccceE
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF----EITWASLRAM-VEPSFGKR-----SVINHTDYL--VNGRI 79 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~----~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~--~~~~~ 79 (290)
+.+|+|||+||++.+||.|+++ .++.++||---.- |+....-... --+.|++- ....+++.- -+.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 4689999999999999999987 8999999964321 2221111100 01222211 111111110 03466
Q ss_pred Eeeeeeeeecc----eEEecCceEEeccEEEEccCCC---CCCCCc-hH----HHHHHHHHHHH--HHhcCCeEEEEcCc
Q 022896 80 VASPAINITEN----EVLTAEGRRVVYDYLVIATGHK---DPVPKT-RT----ERLNQYQAENQ--KIKSARSILIVGGG 145 (290)
Q Consensus 80 ~~~~v~~~~~~----~v~~~~~~~~~~~~vi~a~G~~---~~~p~~-~~----~~~~~~~~~~~--~~~~~~~v~iiG~g 145 (290)
+...|..++.+ .+++ +.+...+|.+|+|||.. ..+|+. +. +.+..+.-+.. .+...|...|||+|
T Consensus 88 ~tEtVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGG 166 (322)
T KOG0404|consen 88 ITETVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGG 166 (322)
T ss_pred eeeehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCc
Confidence 77788887765 3444 55678999999999987 356763 21 22333332222 34678999999999
Q ss_pred hhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHh-CCcEEEeCceEeecccCCCc---eeEE-cCCC-
Q 022896 146 PTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGS---DTYL-TSTG- 219 (290)
Q Consensus 146 ~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~---~~v~-~~~g- 219 (290)
.+++|-|.+|..+ +.+|++++|++.+ +..+.+.+..++ .+|++++++.+.+...+.+. ..+. ...|
T Consensus 167 DsA~EEA~fLtky--askVyii~Rrd~f------RAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge 238 (322)
T KOG0404|consen 167 DSAMEEALFLTKY--ASKVYIIHRRDHF------RASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGE 238 (322)
T ss_pred HHHHHHHHHHHhh--ccEEEEEEEhhhh------hHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCc
Confidence 9999999999985 8999999999987 677777766655 48999999988555544332 3332 2333
Q ss_pred -cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896 220 -DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 280 (290)
Q Consensus 220 -~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~ 280 (290)
..++.+-+++++|..|+..+++. .++++++|++.+-+.---+++|++||+||+.+..-
T Consensus 239 ~~dl~v~GlFf~IGH~Pat~~l~g---qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~ky 297 (322)
T KOG0404|consen 239 ETDLPVSGLFFAIGHSPATKFLKG---QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKY 297 (322)
T ss_pred ccccccceeEEEecCCchhhHhcC---ceeeccCceEEeccCcccccccceeeccccchHHH
Confidence 47899999999999999999988 33789999999987544448999999999987543
No 66
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.95 E-value=1.3e-26 Score=199.92 Aligned_cols=254 Identities=16% Similarity=0.146 Sum_probs=159.6
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEeeeeeeee
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINIT 88 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~ 88 (290)
..++|+||||||+||++|.+|++ |++|+|+|+.+.+++.+.. .........+......+++. ++++.... .+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~--gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~--~v~ 215 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF--GIPSFKLDKAVLSRRREIFTAMGIEFHLNC--EVG 215 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee--cCccccCCHHHHHHHHHHHHHCCCEEECCC--EeC
Confidence 46899999999999999999976 9999999999887654321 00000111111111112221 22332111 111
Q ss_pred cceEEecCceEEeccEEEEccCCCC----CCCCchHHHHHHHHHHH--------H---------HHhcCCeEEEEcCchh
Q 022896 89 ENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRTERLNQYQAEN--------Q---------KIKSARSILIVGGGPT 147 (290)
Q Consensus 89 ~~~v~~~~~~~~~~~~vi~a~G~~~----~~p~~~~~~~~~~~~~~--------~---------~~~~~~~v~iiG~g~~ 147 (290)
. .+...+ ....||.|++|||+.+ .+|+.....+.....+. . ....+++++|+|+|.+
T Consensus 216 ~-~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 293 (467)
T TIGR01318 216 R-DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDT 293 (467)
T ss_pred C-ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHH
Confidence 1 111111 2347999999999974 34553222211111000 0 0124689999999999
Q ss_pred HHHHHHHHhhhCCC-CeEEEEecCccc-cccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-e-eEEc-------
Q 022896 148 GVELAGEIAVDFPE-KKVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-D-TYLT------- 216 (290)
Q Consensus 148 ~~~~a~~l~~~~~~-~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~-~v~~------- 216 (290)
++++|..+.. .+ .+|+++.+.+.. ++.. .. ..+.+++.||++++++.++++..++++ + .+.+
T Consensus 294 a~d~A~~a~~--~Ga~~Vtvv~r~~~~~~~~~----~~-e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~ 366 (467)
T TIGR01318 294 AMDCVRTAIR--LGAASVTCAYRRDEANMPGS----RR-EVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGE 366 (467)
T ss_pred HHHHHHHHHH--cCCCeEEEEEecCcccCCCC----HH-HHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecc
Confidence 9999998775 35 579999987643 2211 11 234567889999999998888654332 2 1211
Q ss_pred --CC---------C--cEEeccEEEEccCCCCCc-hhhcccccccccCCCCcEEec----CCccccCCCCeEEeccccCc
Q 022896 217 --ST---------G--DTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVD----ENLRVKGQKNIFAIGDITDI 278 (290)
Q Consensus 217 --~~---------g--~~~~~d~vv~a~G~~~~~-~~l~~~~~~~~~~~~g~~~v~----~~~~~~~~~~vfa~Gd~~~~ 278 (290)
.+ | .++++|.||+++|..|+. .++...++ +++++|++.+| .++++ +.|+||++|||++.
T Consensus 367 ~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl--~~~~~g~i~vd~~~~~~~~T-~~~gVfa~GD~~~~ 443 (467)
T TIGR01318 367 PDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGI--TLDSWGRIITGDVSYLPYQT-TNPKIFAGGDAVRG 443 (467)
T ss_pred cCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCc--cCCCCCCEEeCCccccCccC-CCCCEEEECCcCCC
Confidence 11 2 368999999999999974 55665554 56788999999 56776 79999999999987
Q ss_pred ccc
Q 022896 279 RVS 281 (290)
Q Consensus 279 ~~~ 281 (290)
+..
T Consensus 444 ~~~ 446 (467)
T TIGR01318 444 ADL 446 (467)
T ss_pred ccH
Confidence 653
No 67
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=1.9e-26 Score=206.84 Aligned_cols=255 Identities=16% Similarity=0.176 Sum_probs=158.7
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcC-Cccccccccccccccc--cceEEeeeeeee
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE-PSFGKRSVINHTDYLV--NGRIVASPAINI 87 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~v~~~ 87 (290)
..++|+||||||+||++|.+|++ |++|+|||+.+.+|+.+.. .+. .....+.+....+++. ++++..... +
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~---gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~--v 400 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF---GIPAFKLDKSLLARRREIFSAMGIEFELNCE--V 400 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee---cCCCccCCHHHHHHHHHHHHHCCeEEECCCE--e
Confidence 46899999999999999999986 9999999999887754322 111 0111111111111111 223322111 1
Q ss_pred ecceEEecCceEEeccEEEEccCCCC----CCCCchHHHHH--------HHHHHHH-------H--HhcCCeEEEEcCch
Q 022896 88 TENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRTERLN--------QYQAENQ-------K--IKSARSILIVGGGP 146 (290)
Q Consensus 88 ~~~~v~~~~~~~~~~~~vi~a~G~~~----~~p~~~~~~~~--------~~~~~~~-------~--~~~~~~v~iiG~g~ 146 (290)
.. .+...+ ....||.|++|+|+.. .+|+.....+. ....... . ...+++++|||+|+
T Consensus 401 ~~-~i~~~~-~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~ 478 (654)
T PRK12769 401 GK-DISLES-LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGD 478 (654)
T ss_pred CC-cCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcH
Confidence 10 111111 1246999999999862 34442211111 0000000 0 12468999999999
Q ss_pred hHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCC-Cce-eEEc--------
Q 022896 147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLT-------- 216 (290)
Q Consensus 147 ~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~-~~~-~v~~-------- 216 (290)
+|+++|..+... ...+|+++.+.+...... .....+.+++.||++++++.+.++..++ +.+ .+.+
T Consensus 479 ~a~d~A~~a~r~-ga~~Vt~i~~~~~~~~~~----~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 553 (654)
T PRK12769 479 TAMDCVRTALRH-GASNVTCAYRRDEANMPG----SKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEP 553 (654)
T ss_pred HHHHHHHHHHHc-CCCeEEEeEecCCCCCCC----CHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCc
Confidence 999999877652 335799988765432111 1223455788999999999888776433 321 2221
Q ss_pred -CC---------Cc--EEeccEEEEccCCCCCc-hhhcccccccccCCCCcEEecC----CccccCCCCeEEeccccCcc
Q 022896 217 -ST---------GD--TINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVDE----NLRVKGQKNIFAIGDITDIR 279 (290)
Q Consensus 217 -~~---------g~--~~~~d~vv~a~G~~~~~-~~l~~~~~~~~~~~~g~~~v~~----~~~~~~~~~vfa~Gd~~~~~ 279 (290)
.+ |+ ++++|.||+|+|+.|+. .+++..++ +++.+|.+.+|. +++| +.|+|||+||++.++
T Consensus 554 ~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~~~~T-s~~gVfAaGD~~~g~ 630 (654)
T PRK12769 554 DAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGV--TVDKWGRIIADVESQYRYQT-SNPKIFAGGDAVRGA 630 (654)
T ss_pred CCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCC--cCCCCCCEEeCCCcccCccc-CCCCEEEcCCcCCCC
Confidence 11 22 69999999999999874 56666554 667889999986 3676 799999999999876
Q ss_pred cc
Q 022896 280 VS 281 (290)
Q Consensus 280 ~~ 281 (290)
..
T Consensus 631 ~~ 632 (654)
T PRK12769 631 DL 632 (654)
T ss_pred cH
Confidence 54
No 68
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2e-27 Score=186.40 Aligned_cols=255 Identities=22% Similarity=0.299 Sum_probs=176.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhh---hhhhc------CCccccccccccccccccceEE-
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWAS---LRAMV------EPSFGKRSVINHTDYLVNGRIV- 80 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~~~- 80 (290)
..|||+||||||+|.+||.|.+| |.+.-++-.+ +|+.... ...++ .+.+....-...++| .+++.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer--fGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y--~vDimn 285 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQY--DVDVMN 285 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh--hCCeeccccchhheeccccccchHHHHHHHHHHhhc--Cchhhh
Confidence 46999999999999999999975 8776655321 3322211 11111 111111111111111 11111
Q ss_pred eeeeeeeec-------ceEEecCceEEeccEEEEccCCC---CCCCCchH---HHHHHHHHHHHHHhcCCeEEEEcCchh
Q 022896 81 ASPAINITE-------NEVLTAEGRRVVYDYLVIATGHK---DPVPKTRT---ERLNQYQAENQKIKSARSILIVGGGPT 147 (290)
Q Consensus 81 ~~~v~~~~~-------~~v~~~~~~~~~~~~vi~a~G~~---~~~p~~~~---~~~~~~~~~~~~~~~~~~v~iiG~g~~ 147 (290)
-.++..+.+ .++.+++|..+.++.+|+|||++ .++|+... ...-.+.++...++.+|+|+|||||++
T Consensus 286 ~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNS 365 (520)
T COG3634 286 LQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNS 365 (520)
T ss_pred hhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCcc
Confidence 111222222 26889999999999999999999 46787322 222333445567788999999999999
Q ss_pred HHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhC-CcEEEeCceEeecccCCCc-eeEEc---CCCc--
Q 022896 148 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGS-DTYLT---STGD-- 220 (290)
Q Consensus 148 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~-~~v~~---~~g~-- 220 (290)
|.|.|..|+- .-.+|++++-.+.+ +..+.+.+.++.. +++++.+..-+++..+++. ..+.. .+|+
T Consensus 366 GvEAAIDLAG--iv~hVtllEF~~eL------kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~ 437 (520)
T COG3634 366 GVEAAIDLAG--IVEHVTLLEFAPEL------KADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEH 437 (520)
T ss_pred hHHHHHhHHh--hhheeeeeecchhh------hhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCcee
Confidence 9999999984 46789988866554 5666777777664 8999999999988887554 22221 2333
Q ss_pred EEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896 221 TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 282 (290)
Q Consensus 221 ~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~ 282 (290)
.++-+-|++-+|..||++||+.. +++++.|-|.+|.+..| +.|+|||+|||++.|.-+
T Consensus 438 ~l~LeGvFVqIGL~PNT~WLkg~---vel~~rGEIivD~~g~T-svpGvFAAGD~T~~~yKQ 495 (520)
T COG3634 438 HLELEGVFVQIGLLPNTEWLKGA---VELNRRGEIIVDARGET-NVPGVFAAGDCTTVPYKQ 495 (520)
T ss_pred EEEeeeeEEEEecccChhHhhch---hhcCcCccEEEecCCCc-CCCceeecCcccCCccce
Confidence 57788899999999999999987 37789999999999998 899999999999987543
No 69
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.95 E-value=3.1e-26 Score=212.94 Aligned_cols=257 Identities=14% Similarity=0.097 Sum_probs=165.8
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc---ccceEE-eeeeee
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL---VNGRIV-ASPAIN 86 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~v~~ 86 (290)
..+||+|||||||||+||.+|++ |++|+|||+++.+++.+.............+......+.+ .++.+. ...|..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~ 241 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFG 241 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEE
Confidence 35899999999999999999986 9999999999888765532211111000011111111111 123333 344444
Q ss_pred eecc-eE---E-------------e-cCceEEeccEEEEccCCCCC---CCCchHHHHHHH---HHHHH--HHhcCCeEE
Q 022896 87 ITEN-EV---L-------------T-AEGRRVVYDYLVIATGHKDP---VPKTRTERLNQY---QAENQ--KIKSARSIL 140 (290)
Q Consensus 87 ~~~~-~v---~-------------~-~~~~~~~~~~vi~a~G~~~~---~p~~~~~~~~~~---~~~~~--~~~~~~~v~ 140 (290)
+... .+ . . +....+.+++||+|||+.+. +|+.....+... ..... ....+++++
T Consensus 242 i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~Vv 321 (985)
T TIGR01372 242 YYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIV 321 (985)
T ss_pred EecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEE
Confidence 4322 00 0 0 11126899999999999854 344322222111 11111 123579999
Q ss_pred EEcCchhHHHHHHHHhhhCCC-CeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEc-
Q 022896 141 IVGGGPTGVELAGEIAVDFPE-KKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLT- 216 (290)
Q Consensus 141 iiG~g~~~~~~a~~l~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~- 216 (290)
|+|+|+.++++|..|.. .+ ..+++++..+. +...+.+.+++.||+++.++.++++..++.. +.+..
T Consensus 322 ViG~G~~g~e~A~~L~~--~G~~vV~vv~~~~~--------~~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~ 391 (985)
T TIGR01372 322 VATNNDSAYRAAADLLA--AGIAVVAIIDARAD--------VSPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARN 391 (985)
T ss_pred EECCCHHHHHHHHHHHH--cCCceEEEEccCcc--------hhHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEec
Confidence 99999999999999986 36 46788876653 2345677889999999999999888765443 33331
Q ss_pred -CCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896 217 -STGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 282 (290)
Q Consensus 217 -~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~ 282 (290)
.+++++++|.|+++.|..|+.+++...+..+.+++...- +...++.|+||++||+++.....
T Consensus 392 ~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~----~~~~t~v~gVyaaGD~~g~~~~~ 454 (985)
T TIGR01372 392 GGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAA----FLPGDAVQGCILAGAANGLFGLA 454 (985)
T ss_pred CCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCc----eecCCCCCCeEEeeccCCccCHH
Confidence 245689999999999999999999888776555543211 11124689999999999876443
No 70
>PRK13984 putative oxidoreductase; Provisional
Probab=99.94 E-value=7.6e-26 Score=201.85 Aligned_cols=259 Identities=18% Similarity=0.159 Sum_probs=156.1
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcC-Cccccccccccccccc--cceEEeeeeee
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE-PSFGKRSVINHTDYLV--NGRIVASPAIN 86 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~v~~ 86 (290)
...++|+|||+|++|+++|..|++ |++|+|||+.+..++.+.. .+. .....+......+++. ++++..+....
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~---~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 357 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRY---GIPSYRLPDEALDKDIAFIEALGVKIHLNTRVG 357 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEee---cCCcccCCHHHHHHHHHHHHHCCcEEECCCEeC
Confidence 456899999999999999999976 9999999999877654321 110 0111111111111111 22332221111
Q ss_pred eecceEEecCceEEeccEEEEccCCC----CCCCCchHHHHHHHHHHHH----H-------HhcCCeEEEEcCchhHHHH
Q 022896 87 ITENEVLTAEGRRVVYDYLVIATGHK----DPVPKTRTERLNQYQAENQ----K-------IKSARSILIVGGGPTGVEL 151 (290)
Q Consensus 87 ~~~~~v~~~~~~~~~~~~vi~a~G~~----~~~p~~~~~~~~~~~~~~~----~-------~~~~~~v~iiG~g~~~~~~ 151 (290)
.+ +..++ ....||+||+|||+. +.+|+.....+......+. . ...+++++|||+|.+|+|+
T Consensus 358 ~~---~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~ 433 (604)
T PRK13984 358 KD---IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDI 433 (604)
T ss_pred Cc---CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHH
Confidence 11 11111 235799999999986 2455532221111111111 1 1236899999999999999
Q ss_pred HHHHhhhC----CCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCce-eEEc--------C-
Q 022896 152 AGEIAVDF----PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT--------S- 217 (290)
Q Consensus 152 a~~l~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v~~--------~- 217 (290)
|..+.... ...+|+++..... ...++.. ...+.+ +.+.||++++++.+.++..+++.+ .+.. .
T Consensus 434 A~~l~r~~~~~~g~~~V~v~~~~r~-~~~~~~~-~~e~~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~ 510 (604)
T PRK13984 434 ARSMARLQKMEYGEVNVKVTSLERT-FEEMPAD-MEEIEE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEE 510 (604)
T ss_pred HHHHHhccccccCceEEEEeccccC-cccCCCC-HHHHHH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCC
Confidence 99987531 1246777643211 1112212 222333 346799999998887765444331 1111 1
Q ss_pred ----------CCcEEeccEEEEccCCCCCchhhccc-ccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896 218 ----------TGDTINADCHFLCTGKPVGSDWLKDT-ILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 281 (290)
Q Consensus 218 ----------~g~~~~~d~vv~a~G~~~~~~~l~~~-~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~ 281 (290)
+++++++|.|++|+|..|+..++... +..+.+ ++|++.||++++| ++|+|||+||++..+..
T Consensus 511 G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~~T-s~~gVfAaGD~~~~~~~ 583 (604)
T PRK13984 511 GRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYGQT-SIPWLFAGGDIVHGPDI 583 (604)
T ss_pred CCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCCcc-CCCCEEEecCcCCchHH
Confidence 12379999999999999998887642 222233 4688999999998 79999999999988754
No 71
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.94 E-value=2.2e-25 Score=193.02 Aligned_cols=259 Identities=18% Similarity=0.196 Sum_probs=153.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcC-Cccccccccccccccc--cceEEeeeeeee
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE-PSFGKRSVINHTDYLV--NGRIVASPAINI 87 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~v~~~ 87 (290)
..++|+|||||++|+++|.+|++ |++|+|||+.+.+++.... .+. ............+++. ++++..+.....
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~---gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~ 218 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY---GIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV 218 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec---cCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC
Confidence 35899999999999999999976 9999999999876643211 110 0011111111112221 333332222111
Q ss_pred ecceEEecCceEEeccEEEEccCCC-CC---CCCchHHHHHHHHHHH----------------HHHhcCCeEEEEcCchh
Q 022896 88 TENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTERLNQYQAEN----------------QKIKSARSILIVGGGPT 147 (290)
Q Consensus 88 ~~~~v~~~~~~~~~~~~vi~a~G~~-~~---~p~~~~~~~~~~~~~~----------------~~~~~~~~v~iiG~g~~ 147 (290)
+ +. .+.....||.|++|||.. |. +|+.....+......+ .....+++++|+|+|+.
T Consensus 219 ~---~~-~~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~ 294 (485)
T TIGR01317 219 D---IS-ADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDT 294 (485)
T ss_pred c---cC-HHHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHH
Confidence 1 11 112235799999999997 43 4442222221111100 01135799999999999
Q ss_pred HHHHHHHHhhhCCCCeEEEEecCccccccCC-----hh------HHHHHHHHHHhCCcEE-EeCceEeecccCC-Cc-ee
Q 022896 148 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIG-----PK------AGDKTRDWLISKKVDV-KLGERVNLDSVSE-GS-DT 213 (290)
Q Consensus 148 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~gi~~-~~~~~v~~i~~~~-~~-~~ 213 (290)
++++|..+.. ....+|++++..+....... +. ......+..+..|+++ ++++.+.++..++ +. ..
T Consensus 295 g~d~a~~a~~-~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~ 373 (485)
T TIGR01317 295 GADCVGTSLR-HGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTA 373 (485)
T ss_pred HHHHHHHHHH-cCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEE
Confidence 9999876664 24568999987765432110 01 1222334444456654 4455665554432 22 11
Q ss_pred EEc--------CCC-----------cEEeccEEEEccCCC-CCchhhcccccccccCCCCcEEec-CCccccCCCCeEEe
Q 022896 214 YLT--------STG-----------DTINADCHFLCTGKP-VGSDWLKDTILKDSLDTHGMLMVD-ENLRVKGQKNIFAI 272 (290)
Q Consensus 214 v~~--------~~g-----------~~~~~d~vv~a~G~~-~~~~~l~~~~~~~~~~~~g~~~v~-~~~~~~~~~~vfa~ 272 (290)
+.+ .+| .++++|.||+|+|.. |+..++...++ +++++|++.++ ++++| +.|+|||+
T Consensus 374 v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl--~~~~~G~i~~~~~~~~T-s~~gVfAa 450 (485)
T TIGR01317 374 LRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGV--KKTRRGNISAGYDDYST-SIPGVFAA 450 (485)
T ss_pred EEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCc--ccCCCCCEEecCCCceE-CCCCEEEe
Confidence 210 122 269999999999985 77888877665 55778988654 56776 89999999
Q ss_pred ccccCcccc
Q 022896 273 GDITDIRVS 281 (290)
Q Consensus 273 Gd~~~~~~~ 281 (290)
|||++.+..
T Consensus 451 GD~~~g~~~ 459 (485)
T TIGR01317 451 GDCRRGQSL 459 (485)
T ss_pred eccCCCcHH
Confidence 999986543
No 72
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.94 E-value=5.7e-25 Score=187.86 Aligned_cols=262 Identities=15% Similarity=0.125 Sum_probs=155.4
Q ss_pred cCCCCcEEEEcCChHHHHHHHHhc---cCCcEEEEcCCCCcccchhhhhhhcCCcccc--ccccccccccc--cceEEee
Q 022896 10 EGKNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGK--RSVINHTDYLV--NGRIVAS 82 (290)
Q Consensus 10 ~~~~~dvvIIGaG~aGl~~A~~L~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~ 82 (290)
....++|+|||||||||+||.+|. +|++|+|||+.+.+++... ..+.+.... .....+..++. ++.++..
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr---~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~n 99 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR---SGVAPDHPETKNVTNQFSRVATDDRVSFFGN 99 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe---eccCCCcchhHHHHHHHHHHHHHCCeEEEcC
Confidence 344689999999999999999996 4999999999998765332 223222211 11111122221 2233221
Q ss_pred eeeeeecceEEecCceEEeccEEEEccCCCC----CCCCchHHHHH---HHH----------HHHHHHhcCCeEEEEcCc
Q 022896 83 PAINITENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRTERLN---QYQ----------AENQKIKSARSILIVGGG 145 (290)
Q Consensus 83 ~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~----~~p~~~~~~~~---~~~----------~~~~~~~~~~~v~iiG~g 145 (290)
. .+.. .+..++. ...||.||+|+|+.+ .+|+.....+. ++. ........+++++|||+|
T Consensus 100 v--~vg~-dvtl~~L-~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgG 175 (491)
T PLN02852 100 V--TLGR-DVSLSEL-RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQG 175 (491)
T ss_pred E--EECc-cccHHHH-hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCC
Confidence 1 1111 2333333 347999999999873 45653221111 111 111112357999999999
Q ss_pred hhHHHHHHHHhhh------------------C-CCCeEEEEecCccccccCCh-h-------------------------
Q 022896 146 PTGVELAGEIAVD------------------F-PEKKVTLVHKGSRLLEFIGP-K------------------------- 180 (290)
Q Consensus 146 ~~~~~~a~~l~~~------------------~-~~~~v~~~~~~~~~~~~~~~-~------------------------- 180 (290)
+.++++|..|... . .-.+|+++.|+......+.+ +
T Consensus 176 nvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~ 255 (491)
T PLN02852 176 NVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPED 255 (491)
T ss_pred HHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccch
Confidence 9999999988641 0 23579999887642211110 0
Q ss_pred ------------HHHHHHHHHHh---------CCcEEEeCceEeecccC--C-Cc---eeEE---c------------CC
Q 022896 181 ------------AGDKTRDWLIS---------KKVDVKLGERVNLDSVS--E-GS---DTYL---T------------ST 218 (290)
Q Consensus 181 ------------~~~~~~~~~~~---------~gi~~~~~~~v~~i~~~--~-~~---~~v~---~------------~~ 218 (290)
..+.+.+...+ +++.+++.....++..+ + +. +.+. + .+
T Consensus 256 ~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~t 335 (491)
T PLN02852 256 EEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGT 335 (491)
T ss_pred hhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCC
Confidence 11122222222 57888888887777532 1 22 1111 0 13
Q ss_pred Cc--EEeccEEEEccCCC--CCchh-hcccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896 219 GD--TINADCHFLCTGKP--VGSDW-LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 280 (290)
Q Consensus 219 g~--~~~~d~vv~a~G~~--~~~~~-l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~ 280 (290)
|+ ++++|.||.+.|+. |...+ +.. ...+..+.+|++.+|...++ +.|+|||+|||..+|.
T Consensus 336 ge~~~i~~D~Vi~aIG~~~~p~~~l~f~~-~~gv~~n~~G~V~~d~~~~T-~ipGvyAaGDi~~Gp~ 400 (491)
T PLN02852 336 GEFEDLPCGLVLKSIGYKSLPVDGLPFDH-KRGVVPNVHGRVLSSASGAD-TEPGLYVVGWLKRGPT 400 (491)
T ss_pred CCEEEEECCEEEEeecCCCCCCCCCcccc-CcCeeECCCceEEeCCCCcc-CCCCEEEeeeEecCCC
Confidence 33 68999999999997 43332 221 11234567899999987776 7999999999998765
No 73
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.93 E-value=5.8e-25 Score=176.51 Aligned_cols=268 Identities=20% Similarity=0.263 Sum_probs=197.0
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhh----hhhcCCc------c-------------cc
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASL----RAMVEPS------F-------------GK 64 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~----~~~~~~~------~-------------~~ 64 (290)
..+.-.+|||+|.+..+++...+. +.+|++|..++.+.+.-..+ +...++. | ++
T Consensus 176 p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd 255 (659)
T KOG1346|consen 176 PKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPD 255 (659)
T ss_pred cccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCC
Confidence 346779999999999988888852 89999999887655432111 1111110 0 00
Q ss_pred ccccccccccc----cceEE-eeeeeeeecc--eEEecCceEEeccEEEEccCCCCCCCC-------------chHHHHH
Q 022896 65 RSVINHTDYLV----NGRIV-ASPAINITEN--EVLTAEGRRVVYDYLVIATGHKDPVPK-------------TRTERLN 124 (290)
Q Consensus 65 ~~~~~~~~~~~----~~~~~-~~~v~~~~~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~-------------~~~~~~~ 124 (290)
.++..-.++.. ++.++ ...|..++.. .|.++||.++.||.++||||.+|.-.. .......
T Consensus 256 ~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~ 335 (659)
T KOG1346|consen 256 GFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPA 335 (659)
T ss_pred cceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecch
Confidence 11111111111 12333 3355566544 589999999999999999999975332 1122334
Q ss_pred HHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhC--CCCeEEEEecCcccccc-CChhHHHHHHHHHHhCCcEEEeCce
Q 022896 125 QYQAENQKIKSARSILIVGGGPTGVELAGEIAVDF--PEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGER 201 (290)
Q Consensus 125 ~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~--~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~~~~~~~ 201 (290)
+|..+..-....+++.|||+|..|.|+++.|...+ .+.+|+.++.....+.. ++..+.++..+.+++.|+.++++..
T Consensus 336 DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~ 415 (659)
T KOG1346|consen 336 DFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAK 415 (659)
T ss_pred HHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchh
Confidence 45555555566799999999999999999998654 35677777766555444 4556888889999999999999999
Q ss_pred EeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCC-CcEEecCCccccCCCCeEEeccccCccc
Q 022896 202 VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTH-GMLMVDENLRVKGQKNIFAIGDITDIRV 280 (290)
Q Consensus 202 v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~-g~~~v~~~~~~~~~~~vfa~Gd~~~~~~ 280 (290)
|+++..+.....+.++||.++..|.||+|+|..||.++++..+|.+ +++ |...+|..++. ..|||++||++...+
T Consensus 416 v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLei--D~~lGGfrvnaeL~a--r~NvwvAGdaacF~D 491 (659)
T KOG1346|consen 416 VESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEI--DEKLGGFRVNAELKA--RENVWVAGDAACFED 491 (659)
T ss_pred hhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhccccccee--ecccCcEEeeheeec--ccceeeecchhhhhc
Confidence 9999999999999999999999999999999999999999999855 554 88999999997 699999999988776
Q ss_pred cc
Q 022896 281 SA 282 (290)
Q Consensus 281 ~~ 282 (290)
..
T Consensus 492 ~~ 493 (659)
T KOG1346|consen 492 GV 493 (659)
T ss_pred cc
Confidence 54
No 74
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.93 E-value=5.4e-25 Score=196.68 Aligned_cols=255 Identities=17% Similarity=0.203 Sum_probs=158.1
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCC-ccccccccccccccc--cceEEeeeeeee
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYLV--NGRIVASPAINI 87 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~v~~~ 87 (290)
..++|+||||||+||++|+.|++ |++|+|||+.+.+|+.+.. .+.+ .+.........+++. ++++..... +
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~---gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~--v 383 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF---GIPPFKLDKTVLSQRREIFTAMGIDFHLNCE--I 383 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec---cCCcccCCHHHHHHHHHHHHHCCeEEEcCCc--c
Confidence 47999999999999999999976 9999999999987754321 1111 111111111111111 223322211 1
Q ss_pred ecceEEecCceEEeccEEEEccCCCC----CCCCchHHHHHH---HH-----HHHH---------HHhcCCeEEEEcCch
Q 022896 88 TENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRTERLNQ---YQ-----AENQ---------KIKSARSILIVGGGP 146 (290)
Q Consensus 88 ~~~~v~~~~~~~~~~~~vi~a~G~~~----~~p~~~~~~~~~---~~-----~~~~---------~~~~~~~v~iiG~g~ 146 (290)
.. .+...+ ....||.|++|+|+.+ .+|+.....+.. |. .... ....+++++|+|+|.
T Consensus 384 ~~-~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~ 461 (639)
T PRK12809 384 GR-DITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGD 461 (639)
T ss_pred CC-cCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcH
Confidence 11 112211 2346999999999873 345422211111 11 0000 012468999999999
Q ss_pred hHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-ee-EE---cC----
Q 022896 147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DT-YL---TS---- 217 (290)
Q Consensus 147 ~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~-v~---~~---- 217 (290)
++.+++..+... ...+|+++.+.+..... .....+. .+++.||++++.+.++++..++++ +. +. ..
T Consensus 462 ~a~d~a~~~~~~-Ga~~Vt~v~rr~~~~~~---~~~~e~~-~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 536 (639)
T PRK12809 462 TTMDCLRTSIRL-NAASVTCAYRRDEVSMP---GSRKEVV-NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEP 536 (639)
T ss_pred HHHHHHHHHHHc-CCCeEEEeeecCcccCC---CCHHHHH-HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCc
Confidence 999999876642 33589999987543211 1122222 357789999999999888654332 21 11 10
Q ss_pred --C---------C--cEEeccEEEEccCCCCCc-hhhcccccccccCCCCcEEecCC----ccccCCCCeEEeccccCcc
Q 022896 218 --T---------G--DTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVDEN----LRVKGQKNIFAIGDITDIR 279 (290)
Q Consensus 218 --~---------g--~~~~~d~vv~a~G~~~~~-~~l~~~~~~~~~~~~g~~~v~~~----~~~~~~~~vfa~Gd~~~~~ 279 (290)
+ | .++++|.||+|+|.+|+. .++...++ .++++|++.+|++ ++| +.|+|||+||++.++
T Consensus 537 ~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~~~~T-s~~gVfA~GD~~~g~ 613 (639)
T PRK12809 537 GPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGI--KLDKWGLIQTGDVGYLPTQT-HLKKVFAGGDAVHGA 613 (639)
T ss_pred CCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCc--ccCCCCCEEeCCCcccCccc-CCCCEEEcCCCCCCc
Confidence 1 2 268999999999998863 55655444 5678899999863 676 799999999999876
Q ss_pred cc
Q 022896 280 VS 281 (290)
Q Consensus 280 ~~ 281 (290)
..
T Consensus 614 ~~ 615 (639)
T PRK12809 614 DL 615 (639)
T ss_pred hH
Confidence 53
No 75
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.93 E-value=9.2e-26 Score=193.28 Aligned_cols=249 Identities=16% Similarity=0.231 Sum_probs=153.0
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh------------------c-----C--------
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM------------------V-----E-------- 59 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~------------------~-----~-------- 59 (290)
..++|+|||||++||+||++|.+ |++|+|||+++.+|+.|...... . +
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 46899999999999999999976 99999999999999888432100 0 0
Q ss_pred Cccccc-----------cc---cccccccc----c--c---eEEeeeeeeeecc----eEEecCc----eEEeccEEEEc
Q 022896 60 PSFGKR-----------SV---INHTDYLV----N--G---RIVASPAINITEN----EVLTAEG----RRVVYDYLVIA 108 (290)
Q Consensus 60 ~~~~~~-----------~~---~~~~~~~~----~--~---~~~~~~v~~~~~~----~v~~~~~----~~~~~~~vi~a 108 (290)
.+++.. .+ ....++++ . . -.++..|+.+++. .|.+.++ .+..||+||+|
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvA 168 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVC 168 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEe
Confidence 011100 00 01111111 1 1 1245778777754 2444322 24679999999
Q ss_pred cCC--CCCCCCc------hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChh
Q 022896 109 TGH--KDPVPKT------RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPK 180 (290)
Q Consensus 109 ~G~--~~~~p~~------~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~ 180 (290)
+|. .|.+|.. .+..+|...........+++|+|||+|.+|.|+|..|.. ...+|+++.+...+..
T Consensus 169 tG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~--~a~~V~l~~r~~~~~~----- 241 (461)
T PLN02172 169 NGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAK--VAKEVHIASRASESDT----- 241 (461)
T ss_pred ccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHH--hCCeEEEEEeeccccc-----
Confidence 995 4665541 122222222112233478999999999999999999997 4789999998754311
Q ss_pred HHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCC
Q 022896 181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN 260 (290)
Q Consensus 181 ~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~ 260 (290)
.+.+.....++..+..|..+.. ++ .+.+.||+.+++|.||+|||+.++.+||+..+. +..+.+....+-.+
T Consensus 242 -----~~~~~~~~~~v~~~~~I~~~~~-~g--~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~-i~v~~~~v~~Ly~~ 312 (461)
T PLN02172 242 -----YEKLPVPQNNLWMHSEIDTAHE-DG--SIVFKNGKVVYADTIVHCTGYKYHFPFLETNGY-MRIDENRVEPLYKH 312 (461)
T ss_pred -----cccCcCCCCceEECCcccceec-CC--eEEECCCCCccCCEEEECCcCCccccccCcccc-eeeCCCcchhhHHh
Confidence 0011112334455556644432 22 377789998999999999999999999876331 11222221123333
Q ss_pred ccccC-CCCeEEecccc
Q 022896 261 LRVKG-QKNIFAIGDIT 276 (290)
Q Consensus 261 ~~~~~-~~~vfa~Gd~~ 276 (290)
.-... .|++.++|=..
T Consensus 313 ~f~~~~~p~LafiG~~~ 329 (461)
T PLN02172 313 VFPPALAPGLSFIGLPA 329 (461)
T ss_pred hcCCCCCCcEEEEeccc
Confidence 22223 48999999764
No 76
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.93 E-value=4.4e-24 Score=183.40 Aligned_cols=263 Identities=24% Similarity=0.341 Sum_probs=194.4
Q ss_pred EEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCccc--cccccccc-cccccce-EEeeeeeeee
Q 022896 16 VVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG--KRSVINHT-DYLVNGR-IVASPAINIT 88 (290)
Q Consensus 16 vvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~-~~~~~v~~~~ 88 (290)
++|||+|++|+++|..|.+ +.+++++.++....+........+..... ........ ....+.. .....+..++
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id 80 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID 80 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence 5899999999999998854 78898888887655443333222222111 11111101 0111233 3456788888
Q ss_pred cc--eEEecCceEEeccEEEEccCCCCCCCC-------chHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhC
Q 022896 89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK-------TRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDF 159 (290)
Q Consensus 89 ~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~-------~~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~ 159 (290)
+. .+.+.++ ++.||++++|||.+|..+. ...................++++|+|+|..++++|..+..
T Consensus 81 ~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~-- 157 (415)
T COG0446 81 PENKVVLLDDG-EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAK-- 157 (415)
T ss_pred CCCCEEEECCC-cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHH--
Confidence 76 5777777 8999999999999987653 2222333333333333336899999999999999999997
Q ss_pred CCCeEEEEecCccccccCC-hhHHHHHHHHHHhCCcEEEeCceEeecccCCCcee---EEcCCCcEEeccEEEEccCCCC
Q 022896 160 PEKKVTLVHKGSRLLEFIG-PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT---YLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 160 ~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~---v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
.+.+|++++..++++..+. +.+.+.+.+.++++||+++.+..+..++...+... +...++..+++|.+++++|..|
T Consensus 158 ~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 158 RGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred cCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 4899999999999988777 89999999999999999999999988887766533 5677888999999999999999
Q ss_pred CchhhcccccccccCCCCcEEecCCccccCCCCeEEeccccCccccc
Q 022896 236 GSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 282 (290)
Q Consensus 236 ~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~~ 282 (290)
+..+....... ....+|++.||+++++...++||++|||+..+...
T Consensus 238 ~~~l~~~~~~~-~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~ 283 (415)
T COG0446 238 NVVLANDALPG-LALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAE 283 (415)
T ss_pred cHHHHhhCccc-eeccCCCEEEccccccCCCCCEEeccceEeeeccc
Confidence 87777665422 34567899999999883389999999999987665
No 77
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.92 E-value=3e-24 Score=166.81 Aligned_cols=268 Identities=18% Similarity=0.244 Sum_probs=179.0
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccc--hhhhhhhcCCccccccccccccc-cccceEEeeeee
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEIT--WASLRAMVEPSFGKRSVINHTDY-LVNGRIVASPAI 85 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~ 85 (290)
.+++|+|||||.+|+++|..+.+ .-+|.|+|+.+.+.+. |......+... +....+..+. ..+..|+.++|.
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l--~~srr~~a~liP~~a~wi~ekv~ 115 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSL--DSSRRKQASLIPKGATWIKEKVK 115 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhh--hhccCcccccccCCcHHHHHHHH
Confidence 57999999999999999999964 4689999999876543 33222222111 1112222222 234567778899
Q ss_pred eeecc--eEEecCceEEeccEEEEccCCCC---CCCC-------------chHHHHHHHHHHHHHHhcCCeEEE------
Q 022896 86 NITEN--EVLTAEGRRVVYDYLVIATGHKD---PVPK-------------TRTERLNQYQAENQKIKSARSILI------ 141 (290)
Q Consensus 86 ~~~~~--~v~~~~~~~~~~~~vi~a~G~~~---~~p~-------------~~~~~~~~~~~~~~~~~~~~~v~i------ 141 (290)
.++|+ .|.+++|+++.||++|+|+|... .+++ ......+.........+.++-+--
T Consensus 116 ~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpi 195 (446)
T KOG3851|consen 116 EFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPI 195 (446)
T ss_pred hcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCcc
Confidence 99887 69999999999999999999873 2333 223333443444444444433322
Q ss_pred --EcCchhHHHHHHHHhhhC-CCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEc-C
Q 022896 142 --VGGGPTGVELAGEIAVDF-PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT-S 217 (290)
Q Consensus 142 --iG~g~~~~~~a~~l~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~-~ 217 (290)
.|+..-.+-++..+..++ -..++.++....-..-.--....+++.+..++++|++.+..++.+++.++....++. .
T Consensus 196 KCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~ 275 (446)
T KOG3851|consen 196 KCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLD 275 (446)
T ss_pred ccCCCchhhhhhhHHHHHHhCccccccEEEecCccceecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcC
Confidence 344444445555443321 223444444322111122346888899999999999999999977777666644432 2
Q ss_pred C-C--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecC-CccccCCCCeEEeccccCccccccCC
Q 022896 218 T-G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIRVSASMI 285 (290)
Q Consensus 218 ~-g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~-~~~~~~~~~vfa~Gd~~~~~~~~~~~ 285 (290)
+ | ++++++.+-+.....+ ++.+....+ .+..||+.||. ++|++.+||||++|||.+.|+.++++
T Consensus 276 kPG~t~ei~yslLHv~Ppms~-pe~l~~s~~---adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaA 343 (446)
T KOG3851|consen 276 KPGVTEEIEYSLLHVTPPMST-PEVLANSDL---ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAA 343 (446)
T ss_pred CCCceeEEeeeeeeccCCCCC-hhhhhcCcc---cCcccceecChhhhccccCCCceeeccccCCCchhhHH
Confidence 2 5 3688998888777765 788888764 37889999997 69999999999999999999998754
No 78
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.92 E-value=4.7e-24 Score=188.67 Aligned_cols=257 Identities=19% Similarity=0.211 Sum_probs=156.7
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccc--cceEEeeeeeee
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINI 87 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~ 87 (290)
....+|+||||||+||++|..|++ |++|+|+|+.+.+++.+... ......+.+......+... ++++........
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g--ip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~ 212 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG--IPAYRLPREVLDAEIQRILDLGVEVRLGVRVGE 212 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec--CCCccCCHHHHHHHHHHHHHCCCEEEeCCEECC
Confidence 346899999999999999999976 99999999999877544211 0000111111111011111 222221111100
Q ss_pred ecceEEecCceEEeccEEEEccCCCCC----CCCchHHHHHHHHHHHH------HHhcCCeEEEEcCchhHHHHHHHHhh
Q 022896 88 TENEVLTAEGRRVVYDYLVIATGHKDP----VPKTRTERLNQYQAENQ------KIKSARSILIVGGGPTGVELAGEIAV 157 (290)
Q Consensus 88 ~~~~v~~~~~~~~~~~~vi~a~G~~~~----~p~~~~~~~~~~~~~~~------~~~~~~~v~iiG~g~~~~~~a~~l~~ 157 (290)
+ +.. +.....||.+++|+|.... +++.............. ....+++++|+|+|.++++.+..+..
T Consensus 213 ~---~~~-~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~ 288 (564)
T PRK12771 213 D---ITL-EQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARR 288 (564)
T ss_pred c---CCH-HHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHH
Confidence 1 000 0112358999999998732 33311111111111111 12347899999999999999987665
Q ss_pred hCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCce------eEEc----C-------CC-
Q 022896 158 DFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD------TYLT----S-------TG- 219 (290)
Q Consensus 158 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~------~v~~----~-------~g- 219 (290)
. ...+++++.+.+... +. .....+. .+.+.|++++++..+.++..++++. .+.. . +|
T Consensus 289 l-ga~~v~ii~r~~~~~--~~-~~~~~~~-~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~ 363 (564)
T PRK12771 289 L-GAEEVTIVYRRTRED--MP-AHDEEIE-EALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGE 363 (564)
T ss_pred c-CCCEEEEEEecCccc--CC-CCHHHHH-HHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCc
Confidence 2 347788888765321 11 1222233 3456799999999998886554331 1111 1 22
Q ss_pred -cEEeccEEEEccCCCCCchhhcc-cccccccCCCCcEEecCCccccCCCCeEEeccccCcccc
Q 022896 220 -DTINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 281 (290)
Q Consensus 220 -~~~~~d~vv~a~G~~~~~~~l~~-~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~~ 281 (290)
.++++|.||+|+|..|+..++.+ .++ . +++|++.+|++.+.+++|+||++|||+..+..
T Consensus 364 ~~~i~~D~Vi~A~G~~p~~~~~~~~~gl--~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~ 424 (564)
T PRK12771 364 EETLEADLVVLAIGQDIDSAGLESVPGV--E-VGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRT 424 (564)
T ss_pred eEEEECCEEEECcCCCCchhhhhhccCc--c-cCCCCEEeCCCCccCCCCCEEeccCcCCCchH
Confidence 37999999999999998888875 344 3 67899999994444489999999999986543
No 79
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.88 E-value=3.2e-22 Score=173.67 Aligned_cols=252 Identities=22% Similarity=0.333 Sum_probs=127.2
Q ss_pred CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh-------hc-------------CCccc--cc--ccc
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA-------MV-------------EPSFG--KR--SVI 68 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~-------~~-------------~~~~~--~~--~~~ 68 (290)
++|+|||||++||++|..|.+ |+++++||+++.+|+.|..-.. .. -.+++ .. .+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 689999999999999999975 9999999999999999963210 00 01111 00 000
Q ss_pred ---ccccccc---------cceEEeeeeeeeecc---------eEEecC-c--eEEeccEEEEccCCC--CCCC-----C
Q 022896 69 ---NHTDYLV---------NGRIVASPAINITEN---------EVLTAE-G--RRVVYDYLVIATGHK--DPVP-----K 117 (290)
Q Consensus 69 ---~~~~~~~---------~~~~~~~~v~~~~~~---------~v~~~~-~--~~~~~~~vi~a~G~~--~~~p-----~ 117 (290)
+..+|++ ..-.++..|..+... .+.+.+ + .+..+|+|++|+|.. |.+| +
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G 161 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPG 161 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CT
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhh
Confidence 0111111 112235566665431 244433 3 245799999999986 6555 3
Q ss_pred ---chHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc-cc-----------------
Q 022896 118 ---TRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-EF----------------- 176 (290)
Q Consensus 118 ---~~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~-~~----------------- 176 (290)
+.+..+|+..........+|+|+|||+|.||.|+|.++.. ...+|++..|..... +.
T Consensus 162 ~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~--~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~ 239 (531)
T PF00743_consen 162 LEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSR--VAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFS 239 (531)
T ss_dssp GGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTT--TSCCEEEECC-------------------------
T ss_pred hhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHH--hcCCeEEEEeccccccccccccccccccccccccc
Confidence 1222333333233344579999999999999999999986 366677666544311 00
Q ss_pred ------CChhHHHH---------------------------------HHHHHHhCCcEEEeCceEeecccCCCceeEEcC
Q 022896 177 ------IGPKAGDK---------------------------------TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS 217 (290)
Q Consensus 177 ------~~~~~~~~---------------------------------~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~ 217 (290)
+...+.+. +...+....|++.. .|.++ ++ ..+.+.
T Consensus 240 ~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~--~I~~~--~~--~~v~F~ 313 (531)
T PF00743_consen 240 SFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKP--DIKRF--TE--NSVIFE 313 (531)
T ss_dssp -----------------------------------------------------------EE---EEEE---S--SEEEET
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccc--cc--cccccc
Confidence 00001111 11111112222221 12222 12 345678
Q ss_pred CCcEE-eccEEEEccCCCCCchhhcccccccccCCCCcEEecCCcccc--CCCCeEEecccc
Q 022896 218 TGDTI-NADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVK--GQKNIFAIGDIT 276 (290)
Q Consensus 218 ~g~~~-~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~--~~~~vfa~Gd~~ 276 (290)
||+++ ++|.||+|||++...+||++..+.. .++.+.+-.+.-.. .+|++..+|=+.
T Consensus 314 DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~---~~~~~~LYk~vfp~~~~~ptLafIG~~~ 372 (531)
T PF00743_consen 314 DGSTEEDVDVIIFCTGYKFSFPFLDESLIKV---DDNRVRLYKHVFPPNLDHPTLAFIGLVQ 372 (531)
T ss_dssp TSEEEEE-SEEEE---EE---TTB-TTTT-S----SSSSSEETTTEETETTSTTEEESS-SB
T ss_pred ccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccc
Confidence 89765 6999999999999999998765432 23334444443221 358999999864
No 80
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.85 E-value=3.2e-19 Score=143.91 Aligned_cols=270 Identities=17% Similarity=0.196 Sum_probs=173.5
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCCcccchhhhh-----------h---hcCCcccc----------
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYFEITWASLR-----------A---MVEPSFGK---------- 64 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~~~~~~~~~~-----------~---~~~~~~~~---------- 64 (290)
...+|++.||-||+.|+.|..|.+ +.+.+.+||.+.+..+...+- . ..++..+.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 446999999999999999999976 689999999987542222110 0 01111000
Q ss_pred ---------cc---ccccccccccc------eEEeeeee---eeecc-----eEEecCceEEeccEEEEccCCCCCCCC-
Q 022896 65 ---------RS---VINHTDYLVNG------RIVASPAI---NITEN-----EVLTAEGRRVVYDYLVIATGHKDPVPK- 117 (290)
Q Consensus 65 ---------~~---~~~~~~~~~~~------~~~~~~v~---~~~~~-----~v~~~~~~~~~~~~vi~a~G~~~~~p~- 117 (290)
.. ..++.+|++++ --+...|. .++.+ .+.+.++..++++.+|+.+|.+|.+|+
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~~ 162 (436)
T COG3486 83 RLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPPC 162 (436)
T ss_pred hHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCChH
Confidence 00 01111222211 11344555 33333 256667779999999999999999998
Q ss_pred ----chHHHHHHHHHHHH--HHhcCCeEEEEcCchhHHHHHHHHhhhCCCC--eEEEEecCcccccc---------CChh
Q 022896 118 ----TRTERLNQYQAENQ--KIKSARSILIVGGGPTGVELAGEIAVDFPEK--KVTLVHKGSRLLEF---------IGPK 180 (290)
Q Consensus 118 ----~~~~~~~~~~~~~~--~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~--~v~~~~~~~~~~~~---------~~~~ 180 (290)
.....+|+..-... .....++|.|||+|.+|+|+...|....... ++.|+.|+..+.+. +.|+
T Consensus 163 f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~ 242 (436)
T COG3486 163 FRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPE 242 (436)
T ss_pred HhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCch
Confidence 11234444433322 3334556999999999999999988654444 48899998876542 1221
Q ss_pred HHH------------------------------HHHHHH-------HhCCcEEEeCceEeecccCCCc-eeEEc-----C
Q 022896 181 AGD------------------------------KTRDWL-------ISKKVDVKLGERVNLDSVSEGS-DTYLT-----S 217 (290)
Q Consensus 181 ~~~------------------------------~~~~~~-------~~~gi~~~~~~~v~~i~~~~~~-~~v~~-----~ 217 (290)
.+. ++-+.+ .+.++.++.++++..++.++++ +.+.+ .
T Consensus 243 y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~ 322 (436)
T COG3486 243 YTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETG 322 (436)
T ss_pred hHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCC
Confidence 111 111111 1246788999999999888776 55543 2
Q ss_pred CCcEEeccEEEEccCCCCCc-hhhcccccccccCCCCcEEecCCccccC----CCCeEEeccccCccc
Q 022896 218 TGDTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVDENLRVKG----QKNIFAIGDITDIRV 280 (290)
Q Consensus 218 ~g~~~~~d~vv~a~G~~~~~-~~l~~~~~~~~~~~~g~~~v~~~~~~~~----~~~vfa~Gd~~~~~~ 280 (290)
+.++++.|.||+|||+.... .|++...-.+.++++|.+.++++++... .-.||+.|-+...+.
T Consensus 323 ~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHG 390 (436)
T COG3486 323 ELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHG 390 (436)
T ss_pred CceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccccc
Confidence 23478999999999998544 4887766555788999999999866532 236999887765443
No 81
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.84 E-value=5.5e-22 Score=153.54 Aligned_cols=170 Identities=28% Similarity=0.412 Sum_probs=107.7
Q ss_pred cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCc--ccccccc-----ccccc--cccceE-Eeee
Q 022896 15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPS--FGKRSVI-----NHTDY--LVNGRI-VASP 83 (290)
Q Consensus 15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~--~~~~~~-~~~~ 83 (290)
||+|||||+||++||.+|++ +.+++++|+.+...+....+....... ....... ++.+. ..++++ +...
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 79999999999999999985 999999998875432211111110000 0000000 11111 123444 4556
Q ss_pred eeeeecc--eE----------EecCceEEeccEEEEccCCCCC---CCCc----hHHHHHHHHHHHHHHhcCCeEEEEcC
Q 022896 84 AINITEN--EV----------LTAEGRRVVYDYLVIATGHKDP---VPKT----RTERLNQYQAENQKIKSARSILIVGG 144 (290)
Q Consensus 84 v~~~~~~--~v----------~~~~~~~~~~~~vi~a~G~~~~---~p~~----~~~~~~~~~~~~~~~~~~~~v~iiG~ 144 (290)
+..++.. .+ ...++.++.||++|+|+|..|. +|+. ....+.++..........++++|+|
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG- 159 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG- 159 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES-
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccccccccccccc-
Confidence 6666544 11 2345678999999999998854 4542 1133445555555555566888888
Q ss_pred chhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEec
Q 022896 145 GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINA 224 (290)
Q Consensus 145 g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~ 224 (290)
T Consensus 160 -------------------------------------------------------------------------------- 159 (201)
T PF07992_consen 160 -------------------------------------------------------------------------------- 159 (201)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEccCCCCCchhh-cccccccccCCCCcEEecCCccccCCCCeEEeccccCccc
Q 022896 225 DCHFLCTGKPVGSDWL-KDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 280 (290)
Q Consensus 225 d~vv~a~G~~~~~~~l-~~~~~~~~~~~~g~~~v~~~~~~~~~~~vfa~Gd~~~~~~ 280 (290)
.++| +..++ +++++|++.||+++|+ +.||||++|||++.++
T Consensus 160 ------------~~~l~~~~~~--~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~~~ 201 (201)
T PF07992_consen 160 ------------TEFLAEKLGV--ELDENGFIKVDENLQT-SVPGIYAAGDCAGIYD 201 (201)
T ss_dssp ------------TTTSTHHTTS--TBTTTSSBEEBTTSBB-SSTTEEE-GGGBEESE
T ss_pred ------------cccccccccc--cccccccccccccccc-ccccccccccccccCC
Confidence 4455 44444 6688999999999998 6999999999998764
No 82
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.83 E-value=3.4e-20 Score=140.43 Aligned_cols=264 Identities=20% Similarity=0.284 Sum_probs=156.1
Q ss_pred cEEEEcCChHHHHHHHHhc---cCCcEEEEcCCCCcccch--hhhhhhc-CCccccccccccccccccceEEeeeeeeee
Q 022896 15 RVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITW--ASLRAMV-EPSFGKRSVINHTDYLVNGRIVASPAINIT 88 (290)
Q Consensus 15 dvvIIGaG~aGl~~A~~L~---~g~~v~vie~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 88 (290)
+.+|||||+||.+||.+|+ +..+++++...+....-. .....+. ..+........+..-++ .++.+ |...+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~--~~~~~-v~~~~ 77 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFR--RFLND-VVTWD 77 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHH--HHHHh-hhhhc
Confidence 4689999999999999996 488999999987543111 0111000 00000000000000000 12222 33333
Q ss_pred cc--eEEecCceEEeccEEEEccCCCCCCCCc-------hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhC
Q 022896 89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPKT-------RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDF 159 (290)
Q Consensus 89 ~~--~v~~~~~~~~~~~~vi~a~G~~~~~p~~-------~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~ 159 (290)
.+ .+.+.+|.++.|++|++|+|..|..--. ..+...+.+.+...+...|.|+|+|.|..++|++.++.
T Consensus 78 s~ehci~t~~g~~~ky~kKOG~tg~kPklq~E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk--- 154 (334)
T KOG2755|consen 78 SSEHCIHTQNGEKLKYFKLCLCTGYKPKLQVEGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK--- 154 (334)
T ss_pred cccceEEecCCceeeEEEEEEecCCCcceeecCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh---
Confidence 22 5888899999999999999999753210 11122333444456678899999999999999999886
Q ss_pred CCCeEEEEecCcccccc-CChhHHHHHHHHH------------------------------------------------H
Q 022896 160 PEKKVTLVHKGSRLLEF-IGPKAGDKTRDWL------------------------------------------------I 190 (290)
Q Consensus 160 ~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~------------------------------------------------~ 190 (290)
..+|+|....+.+... +++...+-+.-.+ +
T Consensus 155 -~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~ese 233 (334)
T KOG2755|consen 155 -ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESE 233 (334)
T ss_pred -cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhh
Confidence 5677777766555432 2232222222111 0
Q ss_pred hCCcEEEeCceEeecccCCCceeEEc---CCC--cEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCccccC
Q 022896 191 SKKVDVKLGERVNLDSVSEGSDTYLT---STG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKG 265 (290)
Q Consensus 191 ~~gi~~~~~~~v~~i~~~~~~~~v~~---~~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~~~~~ 265 (290)
++-++...++-++....++. ..+.. ..+ ..+.||+++.|+|..|+..+.-...+ ...++|.+.||..+++ +
T Consensus 234 er~l~~l~~~~~~~~d~~d~-~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~l--q~~edggikvdd~m~t-s 309 (334)
T KOG2755|consen 234 NRSLTYLRNCVITSTDTSDN-LSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKML--QITEDGGIKVDDAMET-S 309 (334)
T ss_pred hhhhHHhhhheeeeccchhh-cccccccccccccceeeeeEEEeccccCcCceEEecChh--hhccccCeeehhhccc-c
Confidence 00111111111111111111 11111 111 25789999999999999986655444 5678999999999998 7
Q ss_pred CCCeEEeccccCccccccCCCCCC
Q 022896 266 QKNIFAIGDITDIRVSASMIFPQV 289 (290)
Q Consensus 266 ~~~vfa~Gd~~~~~~~~~~~~~~~ 289 (290)
.|++||+||+++.--..+..|.|.
T Consensus 310 lpdvFa~gDvctt~~~~s~~wqQm 333 (334)
T KOG2755|consen 310 LPDVFAAGDVCTTTWEPSTLWQQM 333 (334)
T ss_pred ccceeeecceeccCCCCchhhhcc
Confidence 999999999999555555555543
No 83
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.83 E-value=3.3e-20 Score=153.11 Aligned_cols=222 Identities=19% Similarity=0.228 Sum_probs=119.9
Q ss_pred CCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCCcccchhhhhh-----------h---cCCccc-------------
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYFEITWASLRA-----------M---VEPSFG------------- 63 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~~~~~~~~~~~-----------~---~~~~~~------------- 63 (290)
.+|+++||.||++|+.|..|.+ ..++..||+.+.+..+...+.. . .++..+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 4899999999999999999975 6999999998864322211100 0 000000
Q ss_pred ---------ccccccccccc-------ccceEEeeeeeeeecc--------eEEe----cCceEEeccEEEEccCCCCCC
Q 022896 64 ---------KRSVINHTDYL-------VNGRIVASPAINITEN--------EVLT----AEGRRVVYDYLVIATGHKDPV 115 (290)
Q Consensus 64 ---------~~~~~~~~~~~-------~~~~~~~~~v~~~~~~--------~v~~----~~~~~~~~~~vi~a~G~~~~~ 115 (290)
......+.+|+ ...-.+...|+.+.+. .|.+ .++..+.++.||+|+|..|.+
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~i 161 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRI 161 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE--
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCC
Confidence 00011111122 1213456677777653 2444 245689999999999999999
Q ss_pred CCch------HHHHHHHHHHH--HHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CC
Q 022896 116 PKTR------TERLNQYQAEN--QKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IG 178 (290)
Q Consensus 116 p~~~------~~~~~~~~~~~--~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~ 178 (290)
|... ...+|...... ......++|+|||+|.+|.|++..|..+.+..+|+++.|++.+.+. +.
T Consensus 162 P~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~ 241 (341)
T PF13434_consen 162 PEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFS 241 (341)
T ss_dssp -GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGS
T ss_pred CcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcC
Confidence 8722 22223322222 2245789999999999999999999987666799999998775431 11
Q ss_pred h-------------------------------hHHHHHHHH-----H-HhCCcEEEeCceEeecccCCC-ceeEEcCC--
Q 022896 179 P-------------------------------KAGDKTRDW-----L-ISKKVDVKLGERVNLDSVSEG-SDTYLTST-- 218 (290)
Q Consensus 179 ~-------------------------------~~~~~~~~~-----~-~~~gi~~~~~~~v~~i~~~~~-~~~v~~~~-- 218 (290)
| ++.+.+-+. + .+..++++.+++|+.++.+++ ++.+.+.+
T Consensus 242 P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~ 321 (341)
T PF13434_consen 242 PEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQ 321 (341)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETT
T ss_pred chhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECC
Confidence 1 222222111 2 223588999999999988774 67766543
Q ss_pred -C--cEEeccEEEEccCCC
Q 022896 219 -G--DTINADCHFLCTGKP 234 (290)
Q Consensus 219 -g--~~~~~d~vv~a~G~~ 234 (290)
+ .++++|.||+|||++
T Consensus 322 ~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 322 TGEEETLEVDAVILATGYR 340 (341)
T ss_dssp T--EEEEEESEEEE---EE
T ss_pred CCCeEEEecCEEEEcCCcc
Confidence 2 378999999999985
No 84
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.80 E-value=7.5e-19 Score=158.10 Aligned_cols=227 Identities=15% Similarity=0.119 Sum_probs=124.6
Q ss_pred cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccc---------hhhhhh----------------hcCCccc
Q 022896 10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT---------WASLRA----------------MVEPSFG 63 (290)
Q Consensus 10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~---------~~~~~~----------------~~~~~~~ 63 (290)
....++|+|||||||||+||++|++ |++|++||+.+..+.+ |..+.. .+..+++
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~~ 459 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRWD 459 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccch
Confidence 3457999999999999999999975 9999999987543221 111110 0111111
Q ss_pred cccccccccccc---cceEEeeeeeeeecceEEecCceEEeccEEEEccCC-CC---CCCCchHHHHHHHHHHHHH----
Q 022896 64 KRSVINHTDYLV---NGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH-KD---PVPKTRTERLNQYQAENQK---- 132 (290)
Q Consensus 64 ~~~~~~~~~~~~---~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~-~~---~~p~~~~~~~~~~~~~~~~---- 132 (290)
..........+. ++.+..+.. +.. .+..++-....||+|++|+|+ .| .+|+.....+.+...++..
T Consensus 460 k~~l~~i~~il~~g~~v~~~~gv~--lG~-dit~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~~ 536 (1028)
T PRK06567 460 KNNLDILRLILERNNNFKYYDGVA--LDF-NITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQSG 536 (1028)
T ss_pred HHHHHHHHHHHhcCCceEEECCeE--ECc-cCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhhc
Confidence 110000000010 112211211 111 122222234679999999999 34 4555332222222221111
Q ss_pred ----------HhcCCeEEEEcCchhHHHHHHHHhhh--------------------------------------------
Q 022896 133 ----------IKSARSILIVGGGPTGVELAGEIAVD-------------------------------------------- 158 (290)
Q Consensus 133 ----------~~~~~~v~iiG~g~~~~~~a~~l~~~-------------------------------------------- 158 (290)
...+++|+|||||++|+|+|.....+
T Consensus 537 ~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~v 616 (1028)
T PRK06567 537 GAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEEL 616 (1028)
T ss_pred ccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccchh
Confidence 12368999999999999999833210
Q ss_pred ----CCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEc---------------C
Q 022896 159 ----FPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLT---------------S 217 (290)
Q Consensus 159 ----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~---------------~ 217 (290)
.....|+++.|...--........+++. ...+.||++.+...+.++..++++ ..+.+ .
T Consensus 617 ~~l~~~~G~VtIvYRr~~~empA~~~~~eEv~-~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~ 695 (1028)
T PRK06567 617 RKVFNKLGGATVYYRGRLQDSPAYKLNHEELI-YALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQS 695 (1028)
T ss_pred hhhhccCCceEEEecCChhhCCCCCCCHHHHH-HHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccc
Confidence 0011277777665321111111123333 345669999999988888765432 11110 1
Q ss_pred ---------------CCcEEeccEEEEccCCCCCchhh
Q 022896 218 ---------------TGDTINADCHFLCTGKPVGSDWL 240 (290)
Q Consensus 218 ---------------~g~~~~~d~vv~a~G~~~~~~~l 240 (290)
...+++||.||+|+|..|+..+.
T Consensus 696 ~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~ 733 (1028)
T PRK06567 696 HEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD 733 (1028)
T ss_pred cccccCCcCcccCCCccccccCCEEEEecccCCccccc
Confidence 11368999999999999987664
No 85
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.79 E-value=8.4e-19 Score=148.70 Aligned_cols=260 Identities=21% Similarity=0.124 Sum_probs=154.2
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccc-cccccccccccc--ceEEeeeeee
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGK-RSVINHTDYLVN--GRIVASPAIN 86 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~v~~ 86 (290)
...++|+||||||+||++|..|.+ |++|+++|+.+..|+.. .+.+...... +......+++.. +++.... .
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll---~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~--~ 195 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLL---LYGIPDFKLPKDILDRRLELLERSGVEFKLNV--R 195 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeE---EecCchhhccchHHHHHHHHHHHcCeEEEEcc--e
Confidence 345999999999999999999986 99999999999877432 2221111111 111111222221 2222111 1
Q ss_pred eecceEEecCceEEeccEEEEccCCC-C---CCCCchHHHHHHHHHHHHH---------------HhcCCeEEEEcCchh
Q 022896 87 ITENEVLTAEGRRVVYDYLVIATGHK-D---PVPKTRTERLNQYQAENQK---------------IKSARSILIVGGGPT 147 (290)
Q Consensus 87 ~~~~~v~~~~~~~~~~~~vi~a~G~~-~---~~p~~~~~~~~~~~~~~~~---------------~~~~~~v~iiG~g~~ 147 (290)
+.. .+..++- .-.||.+++++|.. | .+|+.....++.....+.. ...+++++|||+|.+
T Consensus 196 vG~-~it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~T 273 (457)
T COG0493 196 VGR-DITLEEL-LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDT 273 (457)
T ss_pred ECC-cCCHHHH-HHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCC
Confidence 111 1222222 23469999999987 3 3555332222222221111 012499999999999
Q ss_pred HHHHHHHHhhhCCCCeEEEEecCccc--cccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-ee-E---E--cC-
Q 022896 148 GVELAGEIAVDFPEKKVTLVHKGSRL--LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DT-Y---L--TS- 217 (290)
Q Consensus 148 ~~~~a~~l~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~-v---~--~~- 217 (290)
++|++...... ....++.+.+...- .............+...+.|++..+......+..++++ +. + . ..
T Consensus 274 a~D~~~t~~r~-Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~ 352 (457)
T COG0493 274 AMDCAGTALRL-GAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGE 352 (457)
T ss_pred HHHHHHHHhhc-CCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccC
Confidence 99999766542 33467766532221 01111123344555677788888877777667664443 11 1 1 00
Q ss_pred -------------CCc--EEeccEEEEccCCCCCchhhcccccccccCCCCcEEecCCc-cccCCCCeEEeccccCcc
Q 022896 218 -------------TGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENL-RVKGQKNIFAIGDITDIR 279 (290)
Q Consensus 218 -------------~g~--~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~~~-~~~~~~~vfa~Gd~~~~~ 279 (290)
.|+ ++.+|.|+.|+|..+...........+..+..|.+.+++.+ ++ +.|++||.||+..+.
T Consensus 353 ~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~t-s~~~vfa~gD~~~g~ 429 (457)
T COG0493 353 YVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQT-SIPGVFAGGDAVRGA 429 (457)
T ss_pred cccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccc-cCCCeeeCceeccch
Confidence 122 57899999999988764443222223456788999999998 55 899999999999863
No 86
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.78 E-value=8.9e-19 Score=155.63 Aligned_cols=263 Identities=18% Similarity=0.172 Sum_probs=143.2
Q ss_pred hhccCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccc-cccccccc--cceEEee
Q 022896 7 QQSEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSV-INHTDYLV--NGRIVAS 82 (290)
Q Consensus 7 ~~~~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~ 82 (290)
+|.....++|.|||+||+||+||-+|.+ ||.|+|+||.+..|+. +.+.+.....+... .+..+++. +++++..
T Consensus 1779 pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggl---l~ygipnmkldk~vv~rrv~ll~~egi~f~tn 1855 (2142)
T KOG0399|consen 1779 PPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGL---LMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTN 1855 (2142)
T ss_pred CcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCce---eeecCCccchhHHHHHHHHHHHHhhCceEEee
Confidence 3445567999999999999999999987 9999999999988743 22332222212111 12222221 2222211
Q ss_pred eeeeeecceEEecCceEEeccEEEEccCCC-C---CCCCchHHHH-------HHHHHH-HHH-------HhcCCeEEEEc
Q 022896 83 PAINITENEVLTAEGRRVVYDYLVIATGHK-D---PVPKTRTERL-------NQYQAE-NQK-------IKSARSILIVG 143 (290)
Q Consensus 83 ~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~-~---~~p~~~~~~~-------~~~~~~-~~~-------~~~~~~v~iiG 143 (290)
+.+..+ + .-|+-.-.+|.+|+|+|+. | .+|+.+...+ +..... +.. ..++|+|+|+|
T Consensus 1856 --~eigk~-v-s~d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivig 1931 (2142)
T KOG0399|consen 1856 --TEIGKH-V-SLDELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIG 1931 (2142)
T ss_pred --cccccc-c-cHHHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEEC
Confidence 122221 2 2233445789999999998 3 4566333222 222111 110 12579999999
Q ss_pred CchhHHHHHHHHhhhCCCCeEEEEecCccc---------cccCCh----hH-HHHHHHHH---------------HhCCc
Q 022896 144 GGPTGVELAGEIAVDFPEKKVTLVHKGSRL---------LEFIGP----KA-GDKTRDWL---------------ISKKV 194 (290)
Q Consensus 144 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~---------~~~~~~----~~-~~~~~~~~---------------~~~gi 194 (290)
||.+|-+|...-.. +....|.-++--+.+ .+.++. ++ ..+.++.. ...+-
T Consensus 1932 ggdtg~dcigtsvr-hg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g 2010 (2142)
T KOG0399|consen 1932 GGDTGTDCIGTSVR-HGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNG 2010 (2142)
T ss_pred CCCccccccccchh-hccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCC
Confidence 99999998765442 223333333311111 111100 11 11111111 11111
Q ss_pred EEEeCceEeecccCCC---ceeEE-cC-CCcEEeccEEEEccCCCCCchhhcccccccccCCCCcEEecC-CccccCCCC
Q 022896 195 DVKLGERVNLDSVSEG---SDTYL-TS-TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-NLRVKGQKN 268 (290)
Q Consensus 195 ~~~~~~~v~~i~~~~~---~~~v~-~~-~g~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~~-~~~~~~~~~ 268 (290)
+ +.+-+..+++++.+ .+.+. .. +.+.++||.+++|.|+.. ++......++++.+++..+.+-. .+.+ ..++
T Consensus 2011 ~-v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~g-pe~~~~~~~~~~~d~rsni~t~~~~y~t-~v~~ 2087 (2142)
T KOG0399|consen 2011 N-VTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVG-PEKSVIEQLNLKTDPRSNILTPKDSYST-DVAK 2087 (2142)
T ss_pred c-eeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccC-cchhhhhhcCcccCccccccCCCccccc-cccc
Confidence 1 11222223344322 23332 22 235789999999999864 44444444555778887766543 4666 7999
Q ss_pred eEEeccccCccc
Q 022896 269 IFAIGDITDIRV 280 (290)
Q Consensus 269 vfa~Gd~~~~~~ 280 (290)
+||+|||..+..
T Consensus 2088 vfaagdcrrgqs 2099 (2142)
T KOG0399|consen 2088 VFAAGDCRRGQS 2099 (2142)
T ss_pred eeecccccCCce
Confidence 999999987643
No 87
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.77 E-value=7.5e-19 Score=136.20 Aligned_cols=154 Identities=27% Similarity=0.390 Sum_probs=88.2
Q ss_pred EEEcCChHHHHHHHHhcc-CCc-EEEEcCCCCcccchhhhhhh---cCCccc-------c---ccc------------cc
Q 022896 17 VVIGGGVAGSLVAKSLQF-SAD-VTLIDPKEYFEITWASLRAM---VEPSFG-------K---RSV------------IN 69 (290)
Q Consensus 17 vIIGaG~aGl~~A~~L~~-g~~-v~vie~~~~~~~~~~~~~~~---~~~~~~-------~---~~~------------~~ 69 (290)
+||||||+||++|.+|.+ |.+ ++|||+++.+|+.|...... ..+... . ... ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 699999999999999975 988 99999999999888743211 111100 0 000 00
Q ss_pred ---cccccc------cceE-Eeeeeeeeecc----eEEecCceEEeccEEEEccCC--CCCCCCchH----HHHHHHHHH
Q 022896 70 ---HTDYLV------NGRI-VASPAINITEN----EVLTAEGRRVVYDYLVIATGH--KDPVPKTRT----ERLNQYQAE 129 (290)
Q Consensus 70 ---~~~~~~------~~~~-~~~~v~~~~~~----~v~~~~~~~~~~~~vi~a~G~--~~~~p~~~~----~~~~~~~~~ 129 (290)
..++++ +..+ .+..|+.+... .+.+.++..+.+++||+|||. .|..|.... ..++.....
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~~~~~ 160 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFRPIIHSADWR 160 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCSEEEEGGG-S
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccccccccceEehhhcC
Confidence 001111 1122 34666666654 477777878999999999997 466554222 222222212
Q ss_pred HHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896 130 NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR 172 (290)
Q Consensus 130 ~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~ 172 (290)
......+++|+|||+|.+|++++..|.+. +.+|+++.|++.
T Consensus 161 ~~~~~~~k~V~VVG~G~SA~d~a~~l~~~--g~~V~~~~R~~~ 201 (203)
T PF13738_consen 161 DPEDFKGKRVVVVGGGNSAVDIAYALAKA--GKSVTLVTRSPI 201 (203)
T ss_dssp TTGGCTTSEEEEE--SHHHHHHHHHHTTT--CSEEEEEESS--
T ss_pred ChhhcCCCcEEEEcChHHHHHHHHHHHhh--CCEEEEEecCCC
Confidence 22234679999999999999999999974 699999999874
No 88
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.76 E-value=4.4e-18 Score=143.65 Aligned_cols=218 Identities=20% Similarity=0.310 Sum_probs=128.6
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh--------h--hhcC----------Cc--cccc---
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL--------R--AMVE----------PS--FGKR--- 65 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~--------~--~~~~----------~~--~~~~--- 65 (290)
..++++|||||+|||++|+.|.+ |+++++|||.+.+|+.|... . ..+. ++ ++.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 46899999999999999999976 99999999999999888644 1 0000 01 1111
Q ss_pred c-------ccccccccccce---E--Eee---eeeeeec-c-eEEecCc----eEEeccEEEEccCCC--CCCCCc----
Q 022896 66 S-------VINHTDYLVNGR---I--VAS---PAINITE-N-EVLTAEG----RRVVYDYLVIATGHK--DPVPKT---- 118 (290)
Q Consensus 66 ~-------~~~~~~~~~~~~---~--~~~---~v~~~~~-~-~v~~~~~----~~~~~~~vi~a~G~~--~~~p~~---- 118 (290)
. ...+..+.+... . ... .|..++. . .|...+. ...-+|.|++|+|.. |.+|..
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~ 164 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPG 164 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCc
Confidence 0 001111111111 1 233 2233332 2 2433332 467899999999998 666652
Q ss_pred ----hHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCc
Q 022896 119 ----RTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV 194 (290)
Q Consensus 119 ----~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 194 (290)
.+..+|+..........+++|+|||+|+||.|++..+... ..++.+..+ ...... . ... ....++
T Consensus 165 ~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~--ak~v~~~~~-~~~~~~---~----~~~-~~~~~~ 233 (448)
T KOG1399|consen 165 IESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRV--AKEVHLSVV-SPKVHV---E----PPE-ILGENL 233 (448)
T ss_pred hhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHh--ccCcceeee-cccccc---c----ccc-eeecce
Confidence 2345555554545556789999999999999999997753 445555543 100000 0 000 000122
Q ss_pred EEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhccccc
Q 022896 195 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL 245 (290)
Q Consensus 195 ~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~ 245 (290)
..+.. |+ ...+.+. +...++....+|.+|+|||+....++++....
T Consensus 234 ~~~~~--i~--~~~e~~~-~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~~ 279 (448)
T KOG1399|consen 234 WQVPS--IK--SFTEDGS-VFEKGGPVERVDRIIFCTGYKYKFPFLETLGL 279 (448)
T ss_pred EEccc--cc--cccCcce-EEEcCceeEEeeeEEEeeeeEeecceeccCCc
Confidence 22211 32 1222222 23346668899999999999988888877653
No 89
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.76 E-value=4.8e-18 Score=145.34 Aligned_cols=162 Identities=23% Similarity=0.322 Sum_probs=108.5
Q ss_pred cCCCCcEEEEcCChHHHHHHHHhcc-CCc-EEEEcCCCCcccchhhhhhh-c----C---Cccccccc------c-----
Q 022896 10 EGKNKRVVVIGGGVAGSLVAKSLQF-SAD-VTLIDPKEYFEITWASLRAM-V----E---PSFGKRSV------I----- 68 (290)
Q Consensus 10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~-v~vie~~~~~~~~~~~~~~~-~----~---~~~~~~~~------~----- 68 (290)
...++||+|||||++||++|++|++ |.+ ++||||++..|+.|...+.- + . ..++...+ .
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~ 84 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEI 84 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccH
Confidence 3457999999999999999999976 777 99999999988887643210 0 0 00000000 0
Q ss_pred --cccccccc----ceE-Eeeeeeeeecc------eEEecCceE--EeccEEEEccCCC--CCCCC------chHHHHHH
Q 022896 69 --NHTDYLVN----GRI-VASPAINITEN------EVLTAEGRR--VVYDYLVIATGHK--DPVPK------TRTERLNQ 125 (290)
Q Consensus 69 --~~~~~~~~----~~~-~~~~v~~~~~~------~v~~~~~~~--~~~~~vi~a~G~~--~~~p~------~~~~~~~~ 125 (290)
.+..++.. ..+ ++..|..++.+ .|.++++.. +.+|+||+|||.. |.+|. +.+..+|+
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS 164 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHS 164 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEch
Confidence 01111111 011 22333333332 466666655 4599999999986 66555 44556666
Q ss_pred HHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896 126 YQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 173 (290)
Q Consensus 126 ~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~ 173 (290)
..........+|+|+|||+|.||.+++..|... +.+|+++.|++..
T Consensus 165 ~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~--ga~vt~~qRs~~~ 210 (443)
T COG2072 165 ADWPNPEDLRGKRVLVIGAGASAVDIAPELAEV--GASVTLSQRSPPH 210 (443)
T ss_pred hcCCCccccCCCeEEEECCCccHHHHHHHHHhc--CCeeEEEecCCCc
Confidence 655555566899999999999999999999974 6999999988764
No 90
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.69 E-value=4.7e-15 Score=122.16 Aligned_cols=180 Identities=19% Similarity=0.163 Sum_probs=110.4
Q ss_pred EEeccEEEEccCCCCCCCCc--------h--HHHHHHHHHHHHH-------------HhcCCeEEEE---cCch------
Q 022896 99 RVVYDYLVIATGHKDPVPKT--------R--TERLNQYQAENQK-------------IKSARSILIV---GGGP------ 146 (290)
Q Consensus 99 ~~~~~~vi~a~G~~~~~p~~--------~--~~~~~~~~~~~~~-------------~~~~~~v~ii---G~g~------ 146 (290)
++....+|+|||-.+.-+.. . --+..++..+... -..+++++.| |+..
T Consensus 298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n~ 377 (622)
T COG1148 298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGNP 377 (622)
T ss_pred EEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCcccCCh
Confidence 57788999999987543320 0 1111222222211 1245777764 5433
Q ss_pred --------hHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcC-
Q 022896 147 --------TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS- 217 (290)
Q Consensus 147 --------~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~- 217 (290)
.++..|..++++++..+++++.-.-+. +.....+.+++.=++.||+++.+..-.-.+..++...|...
T Consensus 378 YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRa---fG~~yEefY~~~Q~~~gV~fIRGrvaei~e~p~~~l~V~~Ed 454 (622)
T COG1148 378 YCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRA---FGKDYEEFYVRSQEDYGVRFIRGRVAEIAEFPKKKLIVRVED 454 (622)
T ss_pred hhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeec---cCccHHHHHHhhhhhhchhhhcCChHHheeCCCCeeEEEEEe
Confidence 356667777777888888877643322 23244444454445789999988644333444444444322
Q ss_pred --CC--cEEeccEEEEccCCCCCc---hhhcccccccccCCCCcEEec-CCccc--cCCCCeEEeccccCcccccc
Q 022896 218 --TG--DTINADCHFLCTGKPVGS---DWLKDTILKDSLDTHGMLMVD-ENLRV--KGQKNIFAIGDITDIRVSAS 283 (290)
Q Consensus 218 --~g--~~~~~d~vv~a~G~~~~~---~~l~~~~~~~~~~~~g~~~v~-~~~~~--~~~~~vfa~Gd~~~~~~~~~ 283 (290)
.| .++++|.||+++|..|.. .+... ++++.+++||+... +.++. ++.++||.+|-|.++.+.++
T Consensus 455 Tl~g~~~e~~~DLVVLa~Gmep~~g~~kia~i--LgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPkdI~~ 528 (622)
T COG1148 455 TLTGEVKEIEADLVVLATGMEPSEGAKKIAKI--LGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPKDIAD 528 (622)
T ss_pred ccCccceecccceEEEeeccccCcchHHHHHh--cCcccCCCCccccCCCCcccccccCCcEEEeecccCCccHHH
Confidence 33 378999999999998743 33334 44467889988765 44432 26899999999998887664
No 91
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.64 E-value=6.2e-15 Score=124.74 Aligned_cols=138 Identities=15% Similarity=0.215 Sum_probs=78.0
Q ss_pred CCCcEEEEcCChHHHHHHHHhc-c-CCcEEEEcCCCCcccchhhhhhhcCCcccc--cccccccccc--ccceEEeeeee
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITWASLRAMVEPSFGK--RSVINHTDYL--VNGRIVASPAI 85 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~-~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~v~ 85 (290)
..++|+|||||||||.||.+|. + |++|+|||+.+.+++.+. ..+.++... .....+...+ .++.+.. . .
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR---~GVaPdh~~~k~v~~~f~~~~~~~~v~f~g-n-v 112 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIR---YGVAPDHIHVKNTYKTFDPVFLSPNYRFFG-N-V 112 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEE---EeCCCCCccHHHHHHHHHHHHhhCCeEEEe-e-e
Confidence 4578999999999999999873 3 999999999998875433 333332211 1111111111 1222321 1 1
Q ss_pred eeecceEEecCceEEeccEEEEccCCCC-CCC------------Cch----HHHHHHHHH----------------H---
Q 022896 86 NITENEVLTAEGRRVVYDYLVIATGHKD-PVP------------KTR----TERLNQYQA----------------E--- 129 (290)
Q Consensus 86 ~~~~~~v~~~~~~~~~~~~vi~a~G~~~-~~p------------~~~----~~~~~~~~~----------------~--- 129 (290)
.+.. .+..++- ...||.||+|+|+.+ .+| +.. ......... .
T Consensus 113 ~VG~-Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ay 190 (506)
T PTZ00188 113 HVGV-DLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNY 190 (506)
T ss_pred EecC-ccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEeecCCCCcccccccccc
Confidence 1111 1222222 337999999999883 334 210 001100000 0
Q ss_pred HHHHhcCCeEEEEcCchhHHHHHHHHh
Q 022896 130 NQKIKSARSILIVGGGPTGVELAGEIA 156 (290)
Q Consensus 130 ~~~~~~~~~v~iiG~g~~~~~~a~~l~ 156 (290)
+..+...++++|||+|+.++|+|..|.
T Consensus 191 L~p~~~~~~vvVIG~GNVAlDvARiL~ 217 (506)
T PTZ00188 191 LNSFENFTTSIIIGNGNVSLDIARILI 217 (506)
T ss_pred ccccCCCCcEEEECCCchHHHHHHHHc
Confidence 000114578999999999999999864
No 92
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.63 E-value=1.6e-14 Score=122.14 Aligned_cols=142 Identities=14% Similarity=0.023 Sum_probs=97.4
Q ss_pred EEEEcCchhHHHHH-HHHhh--hCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeE-
Q 022896 139 ILIVGGGPTGVELA-GEIAV--DFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY- 214 (290)
Q Consensus 139 v~iiG~g~~~~~~a-~~l~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v- 214 (290)
-+|++.+..|+|.+ ..+.. ...+.+|+++...+..++.. ++.+.+.+.+++.|++++.++.|++++.+++.+..
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v 295 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAV 295 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEE
Confidence 35667777888887 44431 13689999998887766553 78888999999999999999999998876665443
Q ss_pred EcCCCc--EEeccEEEEccCCCCCchhhc------c--cccccc-------cC----------CCCcEEecCCccc----
Q 022896 215 LTSTGD--TINADCHFLCTGKPVGSDWLK------D--TILKDS-------LD----------THGMLMVDENLRV---- 263 (290)
Q Consensus 215 ~~~~g~--~~~~d~vv~a~G~~~~~~~l~------~--~~~~~~-------~~----------~~g~~~v~~~~~~---- 263 (290)
...+|+ .+++|.+|+|+|..++..+.. + .++++. |. ..-.+.+|++++.
T Consensus 296 ~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~~ 375 (422)
T PRK05329 296 WTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDSQ 375 (422)
T ss_pred EeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccCC
Confidence 334443 589999999999865543311 0 111110 00 1112556666654
Q ss_pred --cCCCCeEEeccccCccccc
Q 022896 264 --KGQKNIFAIGDITDIRVSA 282 (290)
Q Consensus 264 --~~~~~vfa~Gd~~~~~~~~ 282 (290)
+..+|+||+|++.+++++.
T Consensus 376 g~~~~~nl~a~G~vl~g~d~~ 396 (422)
T PRK05329 376 GGPVIENLYAAGAVLGGYDPI 396 (422)
T ss_pred CCeeccceEEeeehhcCCchH
Confidence 2479999999999999875
No 93
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.59 E-value=4.8e-14 Score=114.55 Aligned_cols=70 Identities=19% Similarity=0.074 Sum_probs=59.1
Q ss_pred ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccC--CCCC-------chhhccccccc
Q 022896 178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG--KPVG-------SDWLKDTILKD 247 (290)
Q Consensus 178 ~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G--~~~~-------~~~l~~~~~~~ 247 (290)
...+...+...+++.||++++++.|.+++.++....+.+++|+++.||.+|+|+| +.|. .+++++.++.+
T Consensus 110 A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I 188 (408)
T COG2081 110 ASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTI 188 (408)
T ss_pred hHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence 3478889999999999999999999999998888999999998999999999999 5553 25666666543
No 94
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.58 E-value=9.3e-14 Score=111.35 Aligned_cols=139 Identities=21% Similarity=0.238 Sum_probs=84.1
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcccchhhhhhhcCCcccccc--cccccccccc--ceEEeeee
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRS--VINHTDYLVN--GRIVASPA 84 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~v 84 (290)
....|.|||+||||+.+|.+|-+ +.+|+|+|+.+.++ ...++.+.++-+.-. ...+...... ..++..
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF---GLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gN-- 93 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF---GLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGN-- 93 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc---ceeeeccCCCCcchhhHHHHHHHHhhccceEEEec--
Confidence 45699999999999999999842 79999999998765 334444444433211 1112222111 111111
Q ss_pred eeeecceEEecCceEEeccEEEEccCCC----CCCCCchHHHHHHHHHHHHHH------------hcCCeEEEEcCchhH
Q 022896 85 INITENEVLTAEGRRVVYDYLVIATGHK----DPVPKTRTERLNQYQAENQKI------------KSARSILIVGGGPTG 148 (290)
Q Consensus 85 ~~~~~~~v~~~~~~~~~~~~vi~a~G~~----~~~p~~~~~~~~~~~~~~~~~------------~~~~~v~iiG~g~~~ 148 (290)
..+.. .+.+.+ -+-.||.+++|.|+. ..+|+.....+.+...+..+. ..+.+++|||.|+.+
T Consensus 94 v~vG~-dvsl~e-L~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVA 171 (468)
T KOG1800|consen 94 VKVGR-DVSLKE-LTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVA 171 (468)
T ss_pred ceecc-cccHHH-HhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCcccccceEEEEccCchh
Confidence 01111 122211 134699999999987 468885444443333332221 136899999999999
Q ss_pred HHHHHHHhh
Q 022896 149 VELAGEIAV 157 (290)
Q Consensus 149 ~~~a~~l~~ 157 (290)
+++|..|..
T Consensus 172 lDvARiLls 180 (468)
T KOG1800|consen 172 LDVARILLS 180 (468)
T ss_pred hhhhhhhhC
Confidence 999998863
No 95
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.43 E-value=3.4e-12 Score=107.83 Aligned_cols=58 Identities=22% Similarity=0.160 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCCC
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVG 236 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~ 236 (290)
..+.+.+.+.+++.|++++++++|++++.++++ +.+.+++++++.+|.||+|+|-.+.
T Consensus 109 ~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 109 SSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSY 167 (409)
T ss_dssp HHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCc
Confidence 367888999999999999999999999887777 8888867779999999999997653
No 96
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.43 E-value=2.8e-12 Score=83.33 Aligned_cols=80 Identities=28% Similarity=0.425 Sum_probs=73.4
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcC
Q 022896 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS 217 (290)
Q Consensus 138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~ 217 (290)
+++|+|+|..|+|+|..+.. .+.+|+++++.+.+.+.+++.+...+.+.+++.||++++++.+++++.+++++.+.++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~--~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~ 78 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE--LGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLE 78 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHH--hCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence 68999999999999999997 5899999999999998899999999999999999999999999999988877557776
Q ss_pred CC
Q 022896 218 TG 219 (290)
Q Consensus 218 ~g 219 (290)
||
T Consensus 79 ~g 80 (80)
T PF00070_consen 79 DG 80 (80)
T ss_dssp TS
T ss_pred cC
Confidence 65
No 97
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.42 E-value=7e-13 Score=111.72 Aligned_cols=66 Identities=24% Similarity=0.155 Sum_probs=53.7
Q ss_pred ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCcee-EEcCCCcEEeccEEEEccCCCCCchhhccccc
Q 022896 178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPVGSDWLKDTIL 245 (290)
Q Consensus 178 ~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~ 245 (290)
...+.+.+.+.+++.|++++.+++|+++..+++.+. +.+.+|+ +.+|.||+|+|.+. ..++...+.
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s-~~l~~~~~~ 212 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS-PQLLPLLGL 212 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH-HHHHHTTTT
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccc-eeeeecccc
Confidence 347899999999999999999999999999888877 9999996 99999999999875 456666544
No 98
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.41 E-value=4.2e-11 Score=100.02 Aligned_cols=159 Identities=22% Similarity=0.331 Sum_probs=95.4
Q ss_pred CCcEEEEcCChHHHHHHHHhcc----CCcEEEEcCCCCcccchh------------------------------hhhhh-
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF----SADVTLIDPKEYFEITWA------------------------------SLRAM- 57 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~----g~~v~vie~~~~~~~~~~------------------------------~~~~~- 57 (290)
+++|+|||+|++|+.+|.+|.+ ...+.|||+...+|.-.. .+...
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 4799999999999999999943 334999999987551100 00000
Q ss_pred -----------cCCcccccccc--cccc----ccc-----cceEEeeeeeeeecc------eEEecCceEEeccEEEEcc
Q 022896 58 -----------VEPSFGKRSVI--NHTD----YLV-----NGRIVASPAINITEN------EVLTAEGRRVVYDYLVIAT 109 (290)
Q Consensus 58 -----------~~~~~~~~~~~--~~~~----~~~-----~~~~~~~~v~~~~~~------~v~~~~~~~~~~~~vi~a~ 109 (290)
..+.++.+.+. .+.+ +.. .+.+++..++.+.+. .+...+|....+|-+|+||
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 00001100000 0000 000 134455666555544 3667788889999999999
Q ss_pred CCCCCCCCchHH-------HHHHHH--HHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896 110 GHKDPVPKTRTE-------RLNQYQ--AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS 171 (290)
Q Consensus 110 G~~~~~p~~~~~-------~~~~~~--~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~ 171 (290)
|..+..+..... .+.+.. ..+.......+|+|+|+|.+.++....+..+....+++.+.|..
T Consensus 161 gh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 161 GHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred cCCCCCcchhhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 998544431000 010000 22334455677999999999999999998765556788888654
No 99
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.33 E-value=1.1e-11 Score=103.95 Aligned_cols=209 Identities=16% Similarity=0.078 Sum_probs=114.3
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCCCcccchhhhhhhcCCcccccccccccc-ccccc-eEEeeeeee
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTD-YLVNG-RIVASPAIN 86 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~v~~ 86 (290)
+++||+|||||+.|+++|++|++ + ++|+|+||...++...+...+.+.+.-......++.. +.... .........
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 36999999999999999999975 4 9999999999877554443333222211000001110 00000 000000000
Q ss_pred eecceEEecCceEEeccEEEEccCCCCCCCCchHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCC----
Q 022896 87 ITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEK---- 162 (290)
Q Consensus 87 ~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~---- 162 (290)
.. -......++++|+|..- ...+...........-. .+ ..++- ..+.+.-|..
T Consensus 82 -----~~---~~f~~~g~l~vA~~e~e------~~~L~~l~~~~~~ngv~-~~-------~~ld~-~~i~~~eP~l~~~~ 138 (429)
T COG0579 82 -----LG---IPFINCGKLSVATGEEE------VERLEKLYERGKANGVF-DL-------EILDK-EEIKELEPLLNEGA 138 (429)
T ss_pred -----hC---CcccccCeEEEEEChHH------HHHHHHHHHHHhhCCCc-ce-------eecCH-HHHHhhCccccccc
Confidence 00 11334467888877541 12222111111110000 00 00111 1111111111
Q ss_pred eEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCC-ceeEEcCCCcE-EeccEEEEccCCCCCchhh
Q 022896 163 KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDT-INADCHFLCTGKPVGSDWL 240 (290)
Q Consensus 163 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~-~~~v~~~~g~~-~~~d~vv~a~G~~~~~~~l 240 (290)
.-.+..+.... -...++...+.+.+.++|++++++++|+.++..++ ...+.+.+|++ ++|+.||.|.|... .+++
T Consensus 139 ~aal~~p~~gi--V~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~A-d~la 215 (429)
T COG0579 139 VAALLVPSGGI--VDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYA-DPLA 215 (429)
T ss_pred eeeEEcCCCce--EcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhH-HHHH
Confidence 11122222111 12236788899999999999999999999999888 46667888876 99999999999874 6777
Q ss_pred cccccc
Q 022896 241 KDTILK 246 (290)
Q Consensus 241 ~~~~~~ 246 (290)
...+++
T Consensus 216 ~~~g~~ 221 (429)
T COG0579 216 QMAGIP 221 (429)
T ss_pred HHhCCC
Confidence 776664
No 100
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.31 E-value=4.8e-11 Score=101.54 Aligned_cols=64 Identities=20% Similarity=0.088 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhccccc
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL 245 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~ 245 (290)
.+...+.+.+++.|++++.+++|++++.+++.+.+.+.++ ++.+|.||+|+|.+. ..+....++
T Consensus 146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~-~~l~~~~g~ 209 (380)
T TIGR01377 146 KALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWT-SKLLSPLGI 209 (380)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcch-HHHhhhccc
Confidence 6777888888999999999999999987777777777666 799999999999864 345444333
No 101
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.30 E-value=7.5e-11 Score=101.23 Aligned_cols=55 Identities=15% Similarity=-0.108 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccC-CCc-eeEEcCCCcEEeccEEEEccCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGS-DTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~-~~~-~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
.+...+.+.+++.|++++.+++|++++.. ++. ..+.+.+| ++.++.||+|+|.+.
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 56667788889999999999999998654 344 45677777 699999999988664
No 102
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.29 E-value=4.4e-11 Score=95.02 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=34.6
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE 48 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~ 48 (290)
...+||+||||||+||++|++|++ |.+|+|+||+..++
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~G 57 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFG 57 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 347999999999999999999986 99999999998765
No 103
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.28 E-value=4.5e-11 Score=103.60 Aligned_cols=64 Identities=13% Similarity=-0.014 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHh----CC--cEEEeCceEeecccCCC-ceeEEcCCCcEEeccEEEEccCCCCCchhhccccc
Q 022896 180 KAGDKTRDWLIS----KK--VDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL 245 (290)
Q Consensus 180 ~~~~~~~~~~~~----~g--i~~~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~ 245 (290)
.+...+.+.+++ .| ++++.+++|+.++.+++ .+.+.+.+| ++.+|.||+|+|.+. ..++...++
T Consensus 212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S-~~La~~~Gi 282 (497)
T PTZ00383 212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYS-LLFAQKMGY 282 (497)
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhH-HHHHHHhCC
Confidence 678888888888 77 88999999999987644 467777777 699999999999884 567766554
No 104
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.28 E-value=6.7e-11 Score=101.75 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
.+...+.+.+++.|++++.++.|+++..+++.+.....+|.++.+|.||.|+|...
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 56777788888899999999999988766665443445667899999999999753
No 105
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.28 E-value=4.5e-11 Score=102.71 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC-----cEEeccEEEEccCCCCCchhhc
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG-----DTINADCHFLCTGKPVGSDWLK 241 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g-----~~~~~d~vv~a~G~~~~~~~l~ 241 (290)
.+...+.+.+++.|++++.+++|++++.+++.+.+.+.++ .++.+|.||+|+|.+. ..++.
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s-~~l~~ 263 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS-RALAA 263 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh-HHHHH
Confidence 5677888889999999999999999887666665543332 3789999999999874 34443
No 106
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.27 E-value=1.1e-10 Score=99.68 Aligned_cols=56 Identities=13% Similarity=0.009 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCC-CcEEeccEEEEccCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST-GDTINADCHFLCTGKPV 235 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~-g~~~~~d~vv~a~G~~~ 235 (290)
.+.+.+.+..++.|.+++.++.++.+..++++..+.... +.++.++.||.|.|...
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 567788889999999999999999999888775544333 36899999999999754
No 107
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.26 E-value=1.3e-09 Score=91.62 Aligned_cols=106 Identities=17% Similarity=0.115 Sum_probs=75.9
Q ss_pred CChhHHHHHHHHHHhCCcEEEeCceEeecccCCCcee-EEcCCC--cEEeccEEEEccCCCCCchhhccc--------cc
Q 022896 177 IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTG--DTINADCHFLCTGKPVGSDWLKDT--------IL 245 (290)
Q Consensus 177 ~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~-v~~~~g--~~~~~d~vv~a~G~~~~~~~l~~~--------~~ 245 (290)
....+.+.+.+.+++.|++++.++.|+++..+++.+. +.+.++ ..+.+|.+|+|+|.+-+..++.+. ++
T Consensus 261 ~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L 340 (419)
T TIGR03378 261 LGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGL 340 (419)
T ss_pred cHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCC
Confidence 3457888999999999999999999999887777644 444555 479999999999998333333321 12
Q ss_pred ccc-------cCC----------CCcEEecCCcccc----CCCCeEEeccccCccccc
Q 022896 246 KDS-------LDT----------HGMLMVDENLRVK----GQKNIFAIGDITDIRVSA 282 (290)
Q Consensus 246 ~~~-------~~~----------~g~~~v~~~~~~~----~~~~vfa~Gd~~~~~~~~ 282 (290)
++. |.. .-.+.+|+++|.. ..+|+|++|-+.+++++.
T Consensus 341 ~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~ 398 (419)
T TIGR03378 341 DVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPI 398 (419)
T ss_pred CcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChH
Confidence 221 111 1236788888831 289999999999998864
No 108
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.26 E-value=6.6e-11 Score=101.00 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccc
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 244 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~ 244 (290)
..+...+.+.+++.|++++.+++++.++.+++.+.+.+.+| ++.+|.||+|+|.+. ..++...+
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s-~~l~~~~g 212 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS-DRLAKMAG 212 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch-HHHHHHhC
Confidence 47888889999999999999999998887776677777766 799999999999875 34444333
No 109
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.25 E-value=1.2e-10 Score=98.94 Aligned_cols=61 Identities=20% Similarity=0.095 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhc
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK 241 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~ 241 (290)
..+...+.+.+.+.|++++.+++|++++.+++.+.+.+++| .+.+|.||+|+|.+. ..++.
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~-~~l~~ 209 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV-KDLLP 209 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch-hhhcc
Confidence 35677777788889999999999999988777777888777 799999999999874 34444
No 110
>PRK10015 oxidoreductase; Provisional
Probab=99.24 E-value=1.6e-10 Score=99.37 Aligned_cols=56 Identities=14% Similarity=0.056 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
.+...+.+.+++.|++++.++.|+.+..+++.+.....++.++.+|.||.|.|...
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcch
Confidence 56667778888899999999999888766555443333455799999999999754
No 111
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.22 E-value=7.1e-10 Score=96.19 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=36.5
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-----CCcEEEEcCCCCcccchh
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-----SADVTLIDPKEYFEITWA 52 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-----g~~v~vie~~~~~~~~~~ 52 (290)
....+++|||||++||+||.+|.+ |.+|+|+|+++.+|+...
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 346899999999999999999964 689999999999887654
No 112
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.22 E-value=2.3e-10 Score=91.25 Aligned_cols=97 Identities=16% Similarity=0.078 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCC-c-eeEEcC-----------CCcEEeccEEEEccCCCCCc-hhhccccc
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG-S-DTYLTS-----------TGDTINADCHFLCTGKPVGS-DWLKDTIL 245 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~-~-~~v~~~-----------~g~~~~~d~vv~a~G~~~~~-~~l~~~~~ 245 (290)
.+...+.+.+++.|++++.++.+.++..+++ . ..+... +..++.++.||.|+|..... ..+.....
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~ 184 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGP 184 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcC
Confidence 6778888888999999999999988876554 3 222211 22478999999999976532 22211110
Q ss_pred --ccc-------cCCC-CcEEecCCccccCCCCeEEeccccCc
Q 022896 246 --KDS-------LDTH-GMLMVDENLRVKGQKNIFAIGDITDI 278 (290)
Q Consensus 246 --~~~-------~~~~-g~~~v~~~~~~~~~~~vfa~Gd~~~~ 278 (290)
... +... ....|+.+-+. +|++|++|=+++.
T Consensus 185 ~~~~~~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~ 225 (257)
T PRK04176 185 ELGIEVPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAANA 225 (257)
T ss_pred CcccccCCccccccCchHHHHHhcCCeE--cCCEEEeehhhhh
Confidence 000 1111 22233333333 8999999977654
No 113
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.19 E-value=3e-10 Score=97.02 Aligned_cols=57 Identities=14% Similarity=0.043 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 236 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 236 (290)
.+.+.+.+.+++.|++++.++++++++.+++.+.+++.+|+++.+|.||.|.|..+.
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 677778888888999999999999998887778888888889999999999999864
No 114
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.19 E-value=1.8e-10 Score=99.68 Aligned_cols=66 Identities=21% Similarity=0.144 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHh-CCcEEEeCceEeecccC-CCceeEE---cCCCc--EEeccEEEEccCCCCCchhhccccc
Q 022896 179 PKAGDKTRDWLIS-KKVDVKLGERVNLDSVS-EGSDTYL---TSTGD--TINADCHFLCTGKPVGSDWLKDTIL 245 (290)
Q Consensus 179 ~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~-~~~~~v~---~~~g~--~~~~d~vv~a~G~~~~~~~l~~~~~ 245 (290)
..+.+.+.+.+.+ .|++++.+++|+.++.+ ++.+.+. +.+++ ++.+|.||+|+|.+. ..++...++
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS-~~La~~~Gi 256 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA-IPLLQKSGI 256 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch-HHHHHHcCC
Confidence 3677778777754 59999999999988766 5556554 34453 689999999999985 677776654
No 115
>PRK06847 hypothetical protein; Provisional
Probab=99.18 E-value=2.2e-10 Score=97.34 Aligned_cols=58 Identities=21% Similarity=0.059 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 237 (290)
.+.+.+.+.+++.|++++.++.+++++.+++.+.+.+.+|+++.+|.||.|.|..+..
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKV 165 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcch
Confidence 6777888888888999999999999987777788888889899999999999987644
No 116
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.18 E-value=2.8e-10 Score=100.73 Aligned_cols=66 Identities=11% Similarity=-0.155 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCCce-eEEc---CCC--cEEeccEEEEccCCCCCchhhccccc
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT---STG--DTINADCHFLCTGKPVGSDWLKDTIL 245 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v~~---~~g--~~~~~d~vv~a~G~~~~~~~l~~~~~ 245 (290)
..+...+...++++|++++.+++|+.+..+++.+ .+.+ .++ .++.++.||.|+|.+. ..+....++
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa-~~l~~~~g~ 220 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG-QHIAEYADL 220 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH-HHHHHhcCC
Confidence 3677778888899999999999999988766542 2332 233 3789999999999885 445444443
No 117
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.17 E-value=3e-10 Score=97.23 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHhC-CcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896 180 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 180 ~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 237 (290)
.+.+.+.+.+.+. +++++.++.+++++.+++++.+.+.+|+++.+|.||.|.|..+..
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHH
Confidence 4666777777666 499999999999987777788888888899999999999987543
No 118
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.17 E-value=8e-10 Score=87.85 Aligned_cols=197 Identities=17% Similarity=0.241 Sum_probs=110.6
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCccc--chhhhhhhcCCcccccccccc-----ccccccceEEee
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI--TWASLRAMVEPSFGKRSVINH-----TDYLVNGRIVAS 82 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 82 (290)
.+..|++|||||..|+++|++|++ |.+++++|+-+.+-. ........++..+.+..+..+ ..|..
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~------- 77 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRN------- 77 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHh-------
Confidence 346899999999999999999976 999999999774321 222223334444433322221 11110
Q ss_pred eeeeeecceEEecCceEEeccEEEEccCCCCCCCCchHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCC-
Q 022896 83 PAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPE- 161 (290)
Q Consensus 83 ~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~- 161 (290)
.....+..+......+-.|.. +.+.+.+.......-....+++ ...++.+++++
T Consensus 78 ---------~~~~~g~~~~~~t~~~~~~~~------e~~~~~sv~~~~k~~~l~h~~l----------~seEvrk~fP~~ 132 (399)
T KOG2820|consen 78 ---------LPEESGVKLHCGTGLLISGDP------ERQRLDSVAANLKRKGLAHSVL----------ISEEVRKRFPSN 132 (399)
T ss_pred ---------ChhhhceeecccceeeecCcH------HHHHHHHHHHHHhhhhhhhhhh----------hHHHHHHhCCCC
Confidence 011112222222222221111 1122233332222222222332 23455555552
Q ss_pred Ce-----EEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccC---CCceeEEcCCCcEEeccEEEEccCC
Q 022896 162 KK-----VTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS---EGSDTYLTSTGDTINADCHFLCTGK 233 (290)
Q Consensus 162 ~~-----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~---~~~~~v~~~~g~~~~~d~vv~a~G~ 233 (290)
.+ +.++...... -...+..+.+...+++.|+.++.+..++.++.. +..+.|.+.+|..+.++.+|+++|.
T Consensus 133 ~~l~d~~~G~~n~~gGv--i~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~Ga 210 (399)
T KOG2820|consen 133 IPLPDGWQGVVNESGGV--INAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGA 210 (399)
T ss_pred ccCCcchhhcccccccE--eeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecH
Confidence 11 1111111111 123367788899999999999999999877643 3338888999988999999999999
Q ss_pred CCCchhhcc
Q 022896 234 PVGSDWLKD 242 (290)
Q Consensus 234 ~~~~~~l~~ 242 (290)
+- ..+|..
T Consensus 211 Wi-~klL~~ 218 (399)
T KOG2820|consen 211 WI-NKLLPT 218 (399)
T ss_pred HH-HhhcCc
Confidence 86 456663
No 119
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.17 E-value=4e-10 Score=96.26 Aligned_cols=57 Identities=11% Similarity=0.006 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHhC-CcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896 180 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 236 (290)
Q Consensus 180 ~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 236 (290)
.+.+.+.+.+++. |++++.++.++.++.+++++.+.+.+|+++.+|.||.|.|..+.
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence 5666777777766 99999999999988777777788888889999999999998764
No 120
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.16 E-value=6.1e-10 Score=94.79 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHhCC-cEEEeCceEeecccCCCceeEEcC-CCcEEeccEEEEccCCCCCc
Q 022896 180 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTS-TGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 180 ~~~~~~~~~~~~~g-i~~~~~~~v~~i~~~~~~~~v~~~-~g~~~~~d~vv~a~G~~~~~ 237 (290)
.+.+.+.+.+.+.+ ++++.+++|+.++.+++.+.+++. +|+++++|.+|-|-|..+..
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~v 164 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAV 164 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHH
Confidence 68888888888765 999999999999998888778777 99999999999999987543
No 121
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.16 E-value=7.4e-10 Score=93.73 Aligned_cols=52 Identities=25% Similarity=0.331 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHhC-CcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 179 PKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 179 ~~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
..+...+.+.+.+. |++++.+++|+.++.. .+.+.+| .+.+|.||+|+|.+.
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCCh
Confidence 36777787777765 9999999999888642 5677777 478999999999874
No 122
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.15 E-value=5.7e-10 Score=97.14 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHhCC-cEEEeCceEeecccCCCc-eeEEc---CCCc--EEeccEEEEccCCCCCchhhccccc
Q 022896 179 PKAGDKTRDWLISKK-VDVKLGERVNLDSVSEGS-DTYLT---STGD--TINADCHFLCTGKPVGSDWLKDTIL 245 (290)
Q Consensus 179 ~~~~~~~~~~~~~~g-i~~~~~~~v~~i~~~~~~-~~v~~---~~g~--~~~~d~vv~a~G~~~~~~~l~~~~~ 245 (290)
..+...+.+.+++.| ++++.+++|+.++.++++ +.+.+ .+|+ ++.++.||+|+|.+. ..++...++
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s-~~L~~~~Gi 255 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA-LPLLQKSGI 255 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch-HHHHHHcCC
Confidence 367888888888876 899999999998875554 55543 3453 689999999999985 667766554
No 123
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.15 E-value=4.6e-10 Score=96.31 Aligned_cols=57 Identities=14% Similarity=0.051 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 236 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 236 (290)
.+.+.+.+.+.+.|++++.++.++.++.+++.+.+.+.+|+++.+|.||.|.|..+.
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence 678888888888999999999999998777778888888889999999999998754
No 124
>PRK07190 hypothetical protein; Provisional
Probab=99.15 E-value=5.3e-10 Score=97.53 Aligned_cols=56 Identities=16% Similarity=0.048 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
.+...+.+.+++.|++++.+++++.++.+++++.+.+.+|+++.++.||.|.|...
T Consensus 110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 46666777888899999999999999888887777777888999999999999865
No 125
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.14 E-value=6.9e-10 Score=94.72 Aligned_cols=56 Identities=14% Similarity=-0.022 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHhCC-cEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896 180 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 236 (290)
Q Consensus 180 ~~~~~~~~~~~~~g-i~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 236 (290)
.+...+.+.+++.| ++++ ++.+++++.+++.+.+.+.+|+++.+|.+|.|.|..+.
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSW 168 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCch
Confidence 67778888888887 9999 88998888777778888888888999999999998753
No 126
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.13 E-value=1.4e-09 Score=89.22 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCC-CcEEeccEEEEccCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST-GDTINADCHFLCTGKPV 235 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~-g~~~~~d~vv~a~G~~~ 235 (290)
.+.+.+.+.+++.|++++.++.++.+..+++.+.+...+ +.++++|.||.|+|...
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 577778888888999999999999888777766555443 45799999999999864
No 127
>PLN02463 lycopene beta cyclase
Probab=99.13 E-value=1.6e-09 Score=93.08 Aligned_cols=56 Identities=20% Similarity=0.133 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 236 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 236 (290)
.+.+.+.+.+.+.|++++ ..+|++++.+++...+.+++|+++.+|.||.|+|..+.
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 577778888888899997 56888888877778888889989999999999998653
No 128
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.13 E-value=5e-10 Score=96.08 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 237 (290)
.+.+.+.+.+++.|++++.++.+++++.+++++.+.+.+|+++.+|.+|.|.|..+..
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAV 170 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchh
Confidence 5666777778888999999999999988777888888888899999999999987643
No 129
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.12 E-value=3.8e-11 Score=106.97 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=64.6
Q ss_pred hcCCeEEEEcCch--hHHHHHHHHhhhCCCCeEEEEecCcccccc--------------CChhHHHHHHHHHHhCCcEEE
Q 022896 134 KSARSILIVGGGP--TGVELAGEIAVDFPEKKVTLVHKGSRLLEF--------------IGPKAGDKTRDWLISKKVDVK 197 (290)
Q Consensus 134 ~~~~~v~iiG~g~--~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~gi~~~ 197 (290)
....++.++|++. .+.+.+..+.. .+..++++.+...++.. ....+...+.+.+++.|++++
T Consensus 155 ~~~~~~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~ 232 (574)
T PRK12842 155 PPLKTITFIGMMFNSSNADLKHFFNA--TRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPIL 232 (574)
T ss_pred CCcccccccceecccchHHHHHHHhh--ccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEE
Confidence 4567888899877 56666666553 34444443332222211 113577778888899999999
Q ss_pred eCceEeecccCCCce-eEE--cCCCc-EEecc-EEEEccCCCC
Q 022896 198 LGERVNLDSVSEGSD-TYL--TSTGD-TINAD-CHFLCTGKPV 235 (290)
Q Consensus 198 ~~~~v~~i~~~~~~~-~v~--~~~g~-~~~~d-~vv~a~G~~~ 235 (290)
.++.++++..+++.+ .+. ..+++ .+.++ .||+|+|-.+
T Consensus 233 ~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 233 TGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred eCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 999999988766542 233 33343 47786 7999999665
No 130
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.12 E-value=1e-09 Score=95.52 Aligned_cols=55 Identities=13% Similarity=-0.008 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
..+...+.+.+++.|++++.++.|+.++. ++.+.+.+.+| ++.+|.||+|+|.+.
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s 237 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWM 237 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEcccccc
Confidence 36788888999999999999999988874 34466777777 699999999999663
No 131
>PRK08013 oxidoreductase; Provisional
Probab=99.11 E-value=1.3e-09 Score=93.26 Aligned_cols=58 Identities=7% Similarity=-0.087 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHhC-CcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896 180 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 180 ~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 237 (290)
.+...+.+.+++. |++++.+++++.++.+++.+.+.+.+|+++.+|.||-|-|..+..
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSWL 170 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcHH
Confidence 5667777777774 899999999999988777888888889999999999999987543
No 132
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.11 E-value=6.8e-10 Score=96.53 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCC-ceeEE---cCCCc--EEeccEEEEccCCCCCchhhccccc
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYL---TSTGD--TINADCHFLCTGKPVGSDWLKDTIL 245 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~-~~~v~---~~~g~--~~~~d~vv~a~G~~~~~~~l~~~~~ 245 (290)
..+...+.+.+++.|++++.+++|++++.+++ .+.+. +.+|+ ++.+|.||+|+|.+. ..++...++
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s-~~La~~~Gi 249 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA-LPLLQKSGI 249 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch-HHHHHHcCC
Confidence 47888899999999999999999999887543 44453 23342 689999999999885 566666554
No 133
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.11 E-value=1.5e-09 Score=92.61 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHhC-CcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896 180 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 236 (290)
Q Consensus 180 ~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 236 (290)
.+.+.+.+.+.+. ++. +.+++++.++.+++++.+.+.+|+++.+|.||.|.|..+.
T Consensus 112 ~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 112 LLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSP 168 (388)
T ss_pred HHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCch
Confidence 5667777777776 466 7899999988778888888888889999999999998753
No 134
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.09 E-value=3.3e-09 Score=90.50 Aligned_cols=57 Identities=19% Similarity=0.109 Sum_probs=47.1
Q ss_pred ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 178 ~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
...+...+.+.+++.|++++.++.+++++.+++.+.+.+ +++++.+|.||+|+|...
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 346788888999999999999999999877666666666 456899999999999754
No 135
>PRK09897 hypothetical protein; Provisional
Probab=99.09 E-value=1.8e-09 Score=94.35 Aligned_cols=145 Identities=17% Similarity=0.277 Sum_probs=80.9
Q ss_pred CCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcc-c-chhh------hh----------------hhcC------
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFE-I-TWAS------LR----------------AMVE------ 59 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~-~-~~~~------~~----------------~~~~------ 59 (290)
+++|+|||||++|+++|.+|.+ ..+|+|||++..+| + .|.. +. .+..
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 3689999999999999999954 46999999987654 1 1111 00 0000
Q ss_pred -------------Ccccccccc-c-ccc----ccc-----c--ceEE-eeeeeeeecc----eEEecC-ceEEeccEEEE
Q 022896 60 -------------PSFGKRSVI-N-HTD----YLV-----N--GRIV-ASPAINITEN----EVLTAE-GRRVVYDYLVI 107 (290)
Q Consensus 60 -------------~~~~~~~~~-~-~~~----~~~-----~--~~~~-~~~v~~~~~~----~v~~~~-~~~~~~~~vi~ 107 (290)
..+..+... . +.+ +.. + +.+. ...|+.+... .+.+.+ +..+.+|.||+
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL 160 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI 160 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence 011111000 0 000 000 0 1222 3467777543 344434 46789999999
Q ss_pred ccCCCCC-CCCchHHHH-HHHH-HHHHHHhcCCeEEEEcCchhHHHHHHHHhhh
Q 022896 108 ATGHKDP-VPKTRTERL-NQYQ-AENQKIKSARSILIVGGGPTGVELAGEIAVD 158 (290)
Q Consensus 108 a~G~~~~-~p~~~~~~~-~~~~-~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~ 158 (290)
|+|..+. .+......+ ..+. ...... .+.+|+|+|.|.+++|.+..|..+
T Consensus 161 AtGh~~p~~~~~~~~yi~~pw~~~~~~~i-~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 161 ATGHVWPDEEEATRTYFPSPWSGLMEAKV-DACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred CCCCCCCCCChhhccccCCCCcchhhcCC-CCCeEEEECCCHHHHHHHHHHHhc
Confidence 9998632 111100000 0000 111122 368999999999999999888754
No 136
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.08 E-value=2.1e-09 Score=93.59 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=34.9
Q ss_pred EEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896 195 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 233 (290)
Q Consensus 195 ~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 233 (290)
+++++++|++++.+++++.+.+.+|+++.+|.||+|+..
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPH 273 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCH
Confidence 899999999999888778888888889999999999874
No 137
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.08 E-value=1.5e-09 Score=93.56 Aligned_cols=62 Identities=19% Similarity=0.112 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCce-eEEcCCCcEEeccEEEEccCCCCCchhhccc
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPVGSDWLKDT 243 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~ 243 (290)
.+...+.+.+++.|++++.+++|++++.+++.+ .+.+.++ ++.+|.||+|+|.+. ..++...
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~-~~l~~~~ 264 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS-TALLKPL 264 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch-HHHHHHh
Confidence 677788888899999999999999988766654 4555544 799999999999875 3444443
No 138
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.08 E-value=4.3e-10 Score=98.17 Aligned_cols=54 Identities=20% Similarity=0.168 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGK 233 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~ 233 (290)
.+.+.+.+.+++.|++|+++++|++|..++++ +++...+|+.+++|.||.+...
T Consensus 225 al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 225 ALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 78999999999999999999999999998875 7788888878999999998876
No 139
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.07 E-value=1.3e-09 Score=93.92 Aligned_cols=58 Identities=12% Similarity=0.048 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHhC-CcEEEeCceEeecccCCCceeEEcCC-C--cEEeccEEEEccCCCCCc
Q 022896 180 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTST-G--DTINADCHFLCTGKPVGS 237 (290)
Q Consensus 180 ~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~~~~-g--~~~~~d~vv~a~G~~~~~ 237 (290)
.+.+.+.+.+.+. |++++.++.+++++.+++.+.+.+.+ + .++++|.||.|.|..+..
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~v 183 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSPI 183 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCchh
Confidence 4556666666664 79999999999988777776666543 2 369999999999987643
No 140
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.07 E-value=7.2e-09 Score=85.90 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=61.1
Q ss_pred cCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCCCchhhc
Q 022896 169 KGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSDWLK 241 (290)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~ 241 (290)
+.+++.....+.+.+.+.+.+++.|+++++++.|.+++..+++ ..+.+++|+++++|.||+|+|... .+++.
T Consensus 163 ~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg-~dw~~ 235 (486)
T COG2509 163 YQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG-RDWFE 235 (486)
T ss_pred cccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch-HHHHH
Confidence 4456666677789999999999999999999999999988875 677888999999999999999875 44444
No 141
>PRK06834 hypothetical protein; Provisional
Probab=99.07 E-value=2.1e-09 Score=93.96 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 237 (290)
.+...+.+.+++.|++++.+++++.++.+++++.+.+.+|+++.+|.||.|.|..+..
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 5777788888889999999999999988888888887788889999999999987644
No 142
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.06 E-value=2.9e-09 Score=90.78 Aligned_cols=57 Identities=12% Similarity=-0.024 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhCC-cEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896 180 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 236 (290)
Q Consensus 180 ~~~~~~~~~~~~~g-i~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 236 (290)
.+.+.+.+.+.+.| ++++.++.+++++.+++++.+.+.+|+++.+|.||.|.|....
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH
Confidence 67777888888887 9999999999998877788888889989999999999998653
No 143
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.06 E-value=9.5e-10 Score=99.86 Aligned_cols=56 Identities=11% Similarity=0.049 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
..+...+.+.+++ |++++.++.|++++.+++.+.+.+.+|..+.+|.||+|+|.+.
T Consensus 408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 408 AELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 3678888888888 9999999999998877777778888887788999999999875
No 144
>PRK09126 hypothetical protein; Provisional
Probab=99.04 E-value=5.9e-09 Score=89.11 Aligned_cols=57 Identities=9% Similarity=0.113 Sum_probs=45.1
Q ss_pred HHHHHHHHH-HhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896 181 AGDKTRDWL-ISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 181 ~~~~~~~~~-~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 237 (290)
+.+.+.+.+ +..|++++.++.+++++.+++.+.+.+++|+++.+|.||.|.|..+..
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~v 169 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSAT 169 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCchh
Confidence 344444444 446999999999999887777778888888899999999999987643
No 145
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.04 E-value=1.4e-08 Score=86.94 Aligned_cols=57 Identities=7% Similarity=-0.134 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEcCCCcEEeccEEEEccCCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPVG 236 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~~ 236 (290)
++.+.+.+.++..|.+++.+++|+++..++++ ..+.+.+|+++.++.||....+.|.
T Consensus 233 ~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 233 GLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 78888888899999999999999999877544 6788889999999999998888764
No 146
>PRK07233 hypothetical protein; Provisional
Probab=99.03 E-value=1.8e-09 Score=93.62 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP 234 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 234 (290)
.+.+.+.+.+++.|++++.++.|++++.+++++.+...+++++++|.||+|++..
T Consensus 199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence 6788888889999999999999999988777765555677789999999999854
No 147
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.02 E-value=3.9e-09 Score=89.89 Aligned_cols=58 Identities=10% Similarity=-0.001 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHh-CCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896 180 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 180 ~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 237 (290)
.+...+.+.+.+ .|++++.++++++++.+++++.+.+.+|.++++|.||.|.|..+..
T Consensus 111 ~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 111 LIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQV 169 (384)
T ss_pred HHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchh
Confidence 344455555544 4799999999999988888888888899999999999999987654
No 148
>PRK07588 hypothetical protein; Provisional
Probab=99.01 E-value=2.3e-09 Score=91.56 Aligned_cols=57 Identities=7% Similarity=-0.039 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 237 (290)
.+...+.+.+. .+++++.++++++++.+++++.+.+.+|+++++|.||.|.|..+..
T Consensus 104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~v 160 (391)
T PRK07588 104 DLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHV 160 (391)
T ss_pred HHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccc
Confidence 45555555443 4899999999999988888888888899999999999999987644
No 149
>PRK06184 hypothetical protein; Provisional
Probab=99.01 E-value=2.7e-09 Score=94.03 Aligned_cols=56 Identities=14% Similarity=0.038 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEc---CCCcEEeccEEEEccCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT---STGDTINADCHFLCTGKPV 235 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~---~~g~~~~~d~vv~a~G~~~ 235 (290)
.+.+.+.+.+.+.|++++.++++++++.+++++.+.+ .+++++.+|.||.|.|..+
T Consensus 110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 110 RTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRS 168 (502)
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCch
Confidence 4667778888888999999999999988777766665 5567899999999999875
No 150
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.00 E-value=5.4e-10 Score=89.18 Aligned_cols=43 Identities=26% Similarity=0.360 Sum_probs=39.7
Q ss_pred CCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCCcccchhhhh
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLR 55 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~~~~~~~~~~ 55 (290)
..+|+|||+|++||+||+.|.+.++||+||.+..+|++...+.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~Tv~ 50 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHANTVA 50 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcccceEEEeccccccCccceee
Confidence 5899999999999999999999999999999999998876653
No 151
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.00 E-value=3.8e-09 Score=89.96 Aligned_cols=56 Identities=11% Similarity=0.051 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHh-CCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 180 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 180 ~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
.+.+.+.+.+.+ .|++++.+++++++..+++++.+.+.+|+++.+|.||.|.|...
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 678888888888 59999999999999877777888888888899999999999875
No 152
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.99 E-value=1.4e-09 Score=91.59 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEc--C-CCc--EEeccEEEEccCCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT--S-TGD--TINADCHFLCTGKPVG 236 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~--~-~g~--~~~~d~vv~a~G~~~~ 236 (290)
.+.+.+.+.+++.|++++.++.+..++.++++..+.. . +|+ ++++|.||-|-|.++.
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence 6778888888999999999999998887777644433 2 343 6899999999998864
No 153
>PRK05868 hypothetical protein; Validated
Probab=98.99 E-value=3.4e-09 Score=89.67 Aligned_cols=57 Identities=7% Similarity=-0.095 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 237 (290)
.+.+.+.+.+ ..|+++++++.++.++.+++++.+.+.+|+++.+|.||-|-|.++..
T Consensus 106 ~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~v 162 (372)
T PRK05868 106 DLVELLYGAT-QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNV 162 (372)
T ss_pred HHHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchH
Confidence 3444443322 46899999999999987777788899999999999999999987644
No 154
>PRK07045 putative monooxygenase; Reviewed
Probab=98.99 E-value=6.5e-09 Score=88.70 Aligned_cols=58 Identities=9% Similarity=0.012 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHh-CCcEEEeCceEeecccCCCc--eeEEcCCCcEEeccEEEEccCCCCCc
Q 022896 180 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 180 ~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~~~ 237 (290)
.+.+.+.+.+.. .|++++++++++.++.++++ +.+.+.+|+++.+|.||.|.|.....
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~v 167 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMI 167 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHH
Confidence 456666776654 58999999999999876555 36778888899999999999987543
No 155
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.98 E-value=2.5e-09 Score=93.42 Aligned_cols=52 Identities=19% Similarity=0.114 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 233 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 233 (290)
.+.+.+.+.+++ .+++++++|+.++.+++++.+.+.+|+++.+|.||+++..
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~ 278 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPH 278 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCH
Confidence 455555555543 5799999999999888888888888888999999999864
No 156
>PRK08244 hypothetical protein; Provisional
Probab=98.97 E-value=7.3e-09 Score=91.11 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEc--CCC-cEEeccEEEEccCCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT--STG-DTINADCHFLCTGKPVG 236 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~--~~g-~~~~~d~vv~a~G~~~~ 236 (290)
.+.+.+.+.+++.|++++.++++++++.+++++.+.+ .+| +++.+|.+|.|.|..+.
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 5677788888888999999999999887777765544 345 47999999999998764
No 157
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.96 E-value=5.3e-09 Score=91.93 Aligned_cols=62 Identities=15% Similarity=0.069 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCC---Cc--EEeccEEEEccCCCCCchhhc
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST---GD--TINADCHFLCTGKPVGSDWLK 241 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~---g~--~~~~d~vv~a~G~~~~~~~l~ 241 (290)
..+...+.+.+++.|++++.+++|+.+..+++.+.+.+.+ |+ ++.++.||.|+|.+. ..++.
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa-~~l~~ 221 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV-KQFLD 221 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH-HHHHh
Confidence 3666777777889999999999999987766655555432 43 689999999999885 34433
No 158
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.96 E-value=6.5e-09 Score=91.41 Aligned_cols=62 Identities=13% Similarity=-0.030 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC----cEEeccEEEEccCCCCCchhhc
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG----DTINADCHFLCTGKPVGSDWLK 241 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g----~~~~~d~vv~a~G~~~~~~~l~ 241 (290)
..+...+...+++.|++++.+++|+++..+++.+.+.+.++ .++.++.||.|+|.+. ..+..
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa-~~l~~ 220 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV-TDVIH 220 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH-HHHHh
Confidence 46777778888999999999999998887766566655443 2589999999999875 34433
No 159
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.96 E-value=6.5e-09 Score=88.18 Aligned_cols=57 Identities=5% Similarity=0.001 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhCC-cEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896 180 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 180 ~~~~~~~~~~~~~g-i~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 237 (290)
.+.+.+.+.+.+.+ ++++.++.++++..+++++.+.+.++ ++.+|.||.|-|..+..
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~v 162 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSKV 162 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCchh
Confidence 67888888887764 99999999999887777777888766 89999999999987644
No 160
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.95 E-value=1.8e-08 Score=89.47 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhC-CcEEEeCceEeecccCCCceeEEcC--CC--cEEeccEEEEccCCCCCc
Q 022896 180 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTS--TG--DTINADCHFLCTGKPVGS 237 (290)
Q Consensus 180 ~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~~~--~g--~~~~~d~vv~a~G~~~~~ 237 (290)
.+.+.+.+.+.+. |++++.++++++++.+++++.+.+. +| +++.+|.||-|.|..+..
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~v 176 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSFV 176 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchhH
Confidence 5667777777764 9999999999999888887776654 56 379999999999987643
No 161
>PRK06185 hypothetical protein; Provisional
Probab=98.95 E-value=2.2e-08 Score=86.03 Aligned_cols=56 Identities=18% Similarity=0.089 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHh-CCcEEEeCceEeecccCCCce---eEEcCCCc-EEeccEEEEccCCCC
Q 022896 180 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD---TYLTSTGD-TINADCHFLCTGKPV 235 (290)
Q Consensus 180 ~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~---~v~~~~g~-~~~~d~vv~a~G~~~ 235 (290)
.+...+.+.+.+ .|++++.++.++++..+++.+ .+...+|+ ++.+|.||.|.|...
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHS 169 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCch
Confidence 456666666665 489999999999887766653 34455664 799999999999875
No 162
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.94 E-value=6.3e-09 Score=88.78 Aligned_cols=56 Identities=18% Similarity=-0.031 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHhCC-cEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 179 PKAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 179 ~~~~~~~~~~~~~~g-i~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
..+...+.+.+++.| ..+..++.+..++.+.+...+.+.+|+ +.+|.||+|+|.+.
T Consensus 156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 156 RLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 378888999999999 555668888777664244777888886 99999999999874
No 163
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.93 E-value=1.6e-09 Score=96.22 Aligned_cols=106 Identities=14% Similarity=0.071 Sum_probs=65.2
Q ss_pred cCCeEEEEcCchhHHHHHHH-------HhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeeccc
Q 022896 135 SARSILIVGGGPTGVELAGE-------IAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV 207 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~-------l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~ 207 (290)
.++.++++|++..+++.+.. +.. .+.++++....+.........+...+.+.+++.|++++.++.++++..
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~ 236 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALK--VGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYV 236 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHH--HHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE
Confidence 35567888888887776643 111 122333222222222334556788888889999999999999999887
Q ss_pred CCCc-eeEEc-CCCc--EEecc-EEEEccC-CCCCchhhcc
Q 022896 208 SEGS-DTYLT-STGD--TINAD-CHFLCTG-KPVGSDWLKD 242 (290)
Q Consensus 208 ~~~~-~~v~~-~~g~--~~~~d-~vv~a~G-~~~~~~~l~~ 242 (290)
+++. ..+.. .+++ .+.++ .||+|+| +..|.+++..
T Consensus 237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 237 EDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 6554 22322 2443 57785 5888775 6665555443
No 164
>PRK06996 hypothetical protein; Provisional
Probab=98.93 E-value=2.1e-08 Score=85.79 Aligned_cols=54 Identities=11% Similarity=-0.035 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC---cEEeccEEEEccCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG---DTINADCHFLCTGK 233 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g---~~~~~d~vv~a~G~ 233 (290)
.+.+.+.+.+++.|++++.+++++.++.+++++.+.+.++ +++.+|.||-|.|.
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence 6788888889999999999999988887777777877654 58999999999995
No 165
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.93 E-value=3.2e-08 Score=84.93 Aligned_cols=57 Identities=12% Similarity=0.030 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHh-CCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896 180 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 236 (290)
Q Consensus 180 ~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 236 (290)
.+...+.+.+.+ .|++++.+++++.++.+++.+.+.+.+|+++.+|.||.|.|..+.
T Consensus 112 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 112 VIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 344556666655 479999999999998777778888889999999999999998653
No 166
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.92 E-value=2.3e-08 Score=82.18 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=80.3
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc---c--------cccC-----ChhHHHHHHHHHHhCCcEEEeCce
Q 022896 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR---L--------LEFI-----GPKAGDKTRDWLISKKVDVKLGER 201 (290)
Q Consensus 138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~---~--------~~~~-----~~~~~~~~~~~~~~~gi~~~~~~~ 201 (290)
+++|||+|+.|+.+|..|.. .+.+++++++.+. + .+.+ ..++...+.+.+++.|++++. +.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~ 78 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR--ANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EE 78 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH--CCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EE
Confidence 68999999999999999986 4889999997641 0 0111 246677888888999999998 88
Q ss_pred EeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhc
Q 022896 202 VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK 241 (290)
Q Consensus 202 v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~ 241 (290)
+..++.+++.+.+.+.++.++.+|.+|+|+|.+|+.+.++
T Consensus 79 v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~ 118 (300)
T TIGR01292 79 VIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIP 118 (300)
T ss_pred EEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCC
Confidence 8888877777778877888999999999999988654333
No 167
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.92 E-value=1.4e-08 Score=86.86 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHh-CCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896 180 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 236 (290)
Q Consensus 180 ~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 236 (290)
.+...+.+.+.+ .|++++.++.++++..+++++.+.+.+|.++.+|.||.|.|.++.
T Consensus 113 ~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 113 DVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA 170 (395)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence 345566666655 589999999999888777778888888888999999999998753
No 168
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.92 E-value=1.1e-09 Score=68.26 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=32.2
Q ss_pred EEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh
Q 022896 18 VIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL 54 (290)
Q Consensus 18 IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~ 54 (290)
|||||++||++|++|++ |.+|+|+|+++.+|+.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~ 38 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSF 38 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEE
Confidence 89999999999999976 99999999999998776543
No 169
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.92 E-value=7.5e-10 Score=98.77 Aligned_cols=58 Identities=14% Similarity=-0.074 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeE--EcCCCc-EEec-cEEEEccCCCCC
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTY--LTSTGD-TINA-DCHFLCTGKPVG 236 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v--~~~~g~-~~~~-d~vv~a~G~~~~ 236 (290)
..+...+.+.+++.|++++.++.++++..+++. ..+ ...++. .+.+ +.||+|+|-..+
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 357788889999999999999999998765544 223 333443 5788 999999987653
No 170
>PRK06753 hypothetical protein; Provisional
Probab=98.91 E-value=5.1e-09 Score=88.88 Aligned_cols=55 Identities=13% Similarity=0.039 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 236 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 236 (290)
.+.+.+.+.+. +.++++++++++++.+++++.+++.+|+++.+|.||.|.|.++.
T Consensus 99 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 99 TLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred HHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 34444444433 46789999999998877788888889999999999999997654
No 171
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.91 E-value=1.6e-08 Score=88.31 Aligned_cols=41 Identities=20% Similarity=0.147 Sum_probs=36.1
Q ss_pred cEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896 194 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP 234 (290)
Q Consensus 194 i~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 234 (290)
.+++.+++|+.++.+++++.+++.+|+++.+|.||++++..
T Consensus 238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 68999999999998888888888888889999999998753
No 172
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.91 E-value=6e-09 Score=88.31 Aligned_cols=60 Identities=20% Similarity=0.176 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcc
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKD 242 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~ 242 (290)
.+.+.+.+.+... ++.+++|+.+..+..+..+.+.+|+++.+|.||+++..+-...++.+
T Consensus 216 ~l~~al~~~l~~~---i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~ 275 (444)
T COG1232 216 SLIEALAEKLEAK---IRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGD 275 (444)
T ss_pred HHHHHHHHHhhhc---eeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCC
Confidence 4555555555544 99999999999987778888889999999999999876554455555
No 173
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.91 E-value=2.6e-08 Score=85.00 Aligned_cols=55 Identities=11% Similarity=-0.055 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccC-CCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~-~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
.+.+.+.+.+.+.|++++ ...+..+..+ ++...+.+.+|+++.++.||.|+|..+
T Consensus 86 ~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 86 RLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 677778888888899987 4567777665 445777778888899999999999875
No 174
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.91 E-value=1.8e-08 Score=85.88 Aligned_cols=55 Identities=15% Similarity=0.048 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCC------C--cEEeccEEEEccCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST------G--DTINADCHFLCTGKPV 235 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~------g--~~~~~d~vv~a~G~~~ 235 (290)
.+.+.+.+.+.+.|++++.+ .++++..+++.+.+...+ | .++.+|.||.|.|..+
T Consensus 93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 93 VFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred HHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence 57777888888889999765 587787777766665442 2 3789999999999754
No 175
>PLN02697 lycopene epsilon cyclase
Probab=98.90 E-value=2.2e-08 Score=87.53 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCcee-EEcCCCcEEeccEEEEccCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
.+.+.+.+.+.+.|+++ .++.|+.+..++++.. +...+|.++.++.||.|+|..+
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 67777888888889998 5678888877666644 3456778899999999999876
No 176
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.89 E-value=2.5e-08 Score=85.21 Aligned_cols=58 Identities=9% Similarity=-0.021 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeeccc-CCCceeEEc-CCCc--EEeccEEEEccCCCCCc
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSV-SEGSDTYLT-STGD--TINADCHFLCTGKPVGS 237 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~-~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~~~ 237 (290)
.+.+.+.+...+.|+++++++.+++++. +++...+.. .+|+ ++.+|.||-|-|.....
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~v 165 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGVS 165 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCch
Confidence 4455566666778999999999987765 455555555 4564 68999999999987643
No 177
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.89 E-value=4.4e-08 Score=82.96 Aligned_cols=55 Identities=15% Similarity=0.056 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
.+.+.+.+.+...| .++.+..|++++..++...+.+.+|+++.++.||-|.|..+
T Consensus 88 ~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 88 DFYEFLLERAAAGG-VIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHHHHHHhhhCC-eEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 56666777777444 45677899999888887888899999999999999999654
No 178
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.89 E-value=2.4e-08 Score=88.11 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKP 234 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~ 234 (290)
.+.+.+.+.+++.|++++.++.|+++..+++. +.|.+.+|+++.+|.||++++..
T Consensus 220 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 220 ALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 67888999999999999999999999877655 57788888889999999998864
No 179
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.88 E-value=1.3e-09 Score=81.56 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=34.6
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCccc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI 49 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~ 49 (290)
...||+||||||+||+||++|++ |.+|+|||++-.+|+
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG 67 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG 67 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC
Confidence 36899999999999999999986 999999999987764
No 180
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.87 E-value=2.9e-08 Score=82.69 Aligned_cols=45 Identities=24% Similarity=0.379 Sum_probs=39.5
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhh
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA 56 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~ 56 (290)
...||+|||||.+||++|++|++ |++|+|+|.++.+|+.....+.
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~ 51 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA 51 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec
Confidence 46999999999999999999988 9999999999998876554443
No 181
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.85 E-value=3.6e-08 Score=84.45 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHh-CCcEEEeCceEeecccCCCceeEEc---CCCcEEeccEEEEccCCCCCc
Q 022896 180 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLT---STGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 180 ~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~~v~~---~~g~~~~~d~vv~a~G~~~~~ 237 (290)
.+.+.+.+.+.+ .++++++++++++++.+++++.+++ .+++++++|.||-|-|..+..
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSML 169 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHhH
Confidence 577777777765 4899999999999987777766654 344579999999999987543
No 182
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.85 E-value=3.6e-08 Score=86.73 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc---eeEEcCCCc--EEeccEEEEccC-CCCCchhhcc
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS---DTYLTSTGD--TINADCHFLCTG-KPVGSDWLKD 242 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~---~~v~~~~g~--~~~~d~vv~a~G-~~~~~~~l~~ 242 (290)
..+...+.+.+++.|++++.++.++++..+++. +.+...+++ ++.++.||+|+| +..+.+++..
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK 259 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence 357778888899999999999999999765553 333334433 688999999998 6666555544
No 183
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.85 E-value=4.5e-08 Score=84.76 Aligned_cols=58 Identities=10% Similarity=0.029 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhCC---cEEEeCceEeecccC-------CCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896 180 KAGDKTRDWLISKK---VDVKLGERVNLDSVS-------EGSDTYLTSTGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 180 ~~~~~~~~~~~~~g---i~~~~~~~v~~i~~~-------~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 237 (290)
.+...+.+.+++.+ ++++.++++++++.+ ++.+++.+.+|+++.+|.+|-|-|..+..
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNV 185 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChh
Confidence 56666777777764 999999999888642 34578888899999999999999987644
No 184
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.84 E-value=6.9e-08 Score=86.80 Aligned_cols=64 Identities=14% Similarity=-0.090 Sum_probs=47.1
Q ss_pred ChhHHHHHHHHHHhCCcEEEeCceEeecccCC--Cc-eeEEc---CCCc--EEeccEEEEccCCCCCchhhcc
Q 022896 178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSE--GS-DTYLT---STGD--TINADCHFLCTGKPVGSDWLKD 242 (290)
Q Consensus 178 ~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~--~~-~~v~~---~~g~--~~~~d~vv~a~G~~~~~~~l~~ 242 (290)
+..+...+.+.+++.|++++.++.|+++..++ +. ..+.. .+++ ++.+|.||+|+|.+. ..++..
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws-~~l~~~ 302 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC-DEVRKM 302 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH-HHHHHh
Confidence 44788889999999999999999999887653 33 23332 2343 689999999999885 344443
No 185
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.84 E-value=4.7e-08 Score=87.10 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhC-CcEEEeCceEeecccCCCceeEE--cCCCc-EEeccEEEEccCCCCCc
Q 022896 180 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYL--TSTGD-TINADCHFLCTGKPVGS 237 (290)
Q Consensus 180 ~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~~~v~--~~~g~-~~~~d~vv~a~G~~~~~ 237 (290)
.+...+.+.+.+. +++++.++++++++.+++++.+. ..+|+ ++.+|.||.|.|..+..
T Consensus 126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~v 187 (547)
T PRK08132 126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSPL 187 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcHH
Confidence 4566677777665 79999999999998877775544 34554 68999999999987643
No 186
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.84 E-value=2e-08 Score=88.31 Aligned_cols=57 Identities=12% Similarity=0.020 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCC
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
..+.+.+.+.+++.|++++.+++|+++..+++. ..+.+.+|+++.+|.||++++.+.
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHH
Confidence 367888999999999999999999999876554 667778888899999999998653
No 187
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.84 E-value=4e-08 Score=84.70 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=34.8
Q ss_pred CCCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCCcccc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEIT 50 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~~~~~ 50 (290)
..+||||||+|.|||+||..+++|.+|+|+||.+..++.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhccCCCEEEEecCCCCCCc
Confidence 358999999999999999999779999999999876544
No 188
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.82 E-value=3e-09 Score=80.11 Aligned_cols=38 Identities=26% Similarity=0.206 Sum_probs=31.2
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCccc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI 49 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~ 49 (290)
..+||+||||||+||+||++|++ |++|++||++..+|+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG 54 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG 54 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 46999999999999999999987 999999999987764
No 189
>PRK11445 putative oxidoreductase; Provisional
Probab=98.81 E-value=5.3e-08 Score=81.90 Aligned_cols=55 Identities=15% Similarity=-0.006 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEc-CCCc--EEeccEEEEccCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT-STGD--TINADCHFLCTGKPV 235 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~ 235 (290)
.+...+.+. .+.|++++.++.++.++.+++++.+.. .+|+ ++.+|.||.|.|..+
T Consensus 100 ~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 100 KFDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred HHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 344444443 456899999999999887777766664 4564 689999999999864
No 190
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.79 E-value=1.1e-08 Score=88.68 Aligned_cols=63 Identities=13% Similarity=0.059 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCC-c---eeEEcCCCc--EEeccEEEEccCC-CCCchhhc
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-S---DTYLTSTGD--TINADCHFLCTGK-PVGSDWLK 241 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~-~---~~v~~~~g~--~~~~d~vv~a~G~-~~~~~~l~ 241 (290)
..+...+.+.+++.|++++.++.++++..+++ . +.+...+++ .+.++.||+|+|. ..|.+++.
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~ 199 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIA 199 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHH
Confidence 46788888899999999999999999987543 2 333334453 4789999999994 44444443
No 191
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.79 E-value=9.8e-09 Score=85.43 Aligned_cols=97 Identities=25% Similarity=0.300 Sum_probs=56.9
Q ss_pred cEEEEcCChHHHHHHHHhcc-CCcEEEE-cCCCCcccc------------------------hhhhhh--hc-----CCc
Q 022896 15 RVVVIGGGVAGSLVAKSLQF-SADVTLI-DPKEYFEIT------------------------WASLRA--MV-----EPS 61 (290)
Q Consensus 15 dvvIIGaG~aGl~~A~~L~~-g~~v~vi-e~~~~~~~~------------------------~~~~~~--~~-----~~~ 61 (290)
||+|||||.||+.||+.+++ |.+|+|+ .+.+.++.. ...... .+ +..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 89999999999999999987 9999999 333322210 000000 00 000
Q ss_pred --ccc-------------ccccccccccccceEEeeeeeeeecc-----eEEecCceEEeccEEEEccCC
Q 022896 62 --FGK-------------RSVINHTDYLVNGRIVASPAINITEN-----EVLTAEGRRVVYDYLVIATGH 111 (290)
Q Consensus 62 --~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~~~-----~v~~~~~~~~~~~~vi~a~G~ 111 (290)
... ..+....+-..+..++++.|+.+..+ -|.+.+|..+.++.+|+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 000 00000011122467788899888764 378889999999999999999
No 192
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.79 E-value=1.8e-08 Score=88.50 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=31.4
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
.++||+|||||+||+.||..+++ |.+|+++|++.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 36999999999999999999987 99999999983
No 193
>PLN02612 phytoene desaturase
Probab=98.79 E-value=5.8e-08 Score=86.46 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEcCCCcEEeccEEEEccCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGK 233 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~ 233 (290)
.+.+.+.+.+++.|.++++++.|++|+.++++ ..+.+.+|+++++|.||++++.
T Consensus 309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 57788888888899999999999999876555 4467778889999999999864
No 194
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.78 E-value=5.3e-08 Score=85.15 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEc--CCC--cEEeccEEEEccCC
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLT--STG--DTINADCHFLCTGK 233 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~--~~g--~~~~~d~vv~a~G~ 233 (290)
..+...+.+.+++.|++++.++.++++..+++. ..+.. .++ ..+.++.||+|+|-
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 367778888899999999999999998876554 23332 333 36789999999984
No 195
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.78 E-value=8e-08 Score=83.74 Aligned_cols=56 Identities=16% Similarity=0.282 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEcCCCc-----EEeccEEEEccCCC
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGD-----TINADCHFLCTGKP 234 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~~~g~-----~~~~d~vv~a~G~~ 234 (290)
..+.+.+.+.+++.|.+++.++.|++|+.++++ ..+.+.+|+ ++.+|.||++++..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~ 275 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVD 275 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHH
Confidence 357788888898999999999999999754443 345555554 78999999998754
No 196
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.78 E-value=7.6e-08 Score=80.62 Aligned_cols=83 Identities=14% Similarity=0.158 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHhC-CcEEEeCceEeecccCCCc-eeEEc---CCC--cEEeccEEEEccCCCCCchhhcccccccccCCC
Q 022896 180 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGS-DTYLT---STG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTH 252 (290)
Q Consensus 180 ~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~-~~v~~---~~g--~~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~ 252 (290)
.+++.+.+.+.+. |++++++++|++++..+++ +.+.. .+| .++.+++|++.+|-. ..+++...+++-.....
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~-aL~LLqksgi~e~~gyg 260 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGG-ALPLLQKSGIPEGKGYG 260 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchH-hHHHHHHcCChhhcccC
Confidence 6777777777777 9999999999999887666 66654 223 479999999999987 48899988875322333
Q ss_pred CcEEecCCccc
Q 022896 253 GMLMVDENLRV 263 (290)
Q Consensus 253 g~~~v~~~~~~ 263 (290)
|++.--.++.+
T Consensus 261 gfPVsG~fl~~ 271 (488)
T PF06039_consen 261 GFPVSGQFLRC 271 (488)
T ss_pred CCcccceEEec
Confidence 44333344544
No 197
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.74 E-value=3.7e-08 Score=83.15 Aligned_cols=99 Identities=21% Similarity=0.355 Sum_probs=62.4
Q ss_pred cEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCccc--chhhhhhhcC------------Cccccc------------
Q 022896 15 RVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEI--TWASLRAMVE------------PSFGKR------------ 65 (290)
Q Consensus 15 dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~~--~~~~~~~~~~------------~~~~~~------------ 65 (290)
||+|||||+||+++|.+|++ |.+|+|+|+.+..++ .|........ ..+...
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 79999999999999999963 899999999885543 1221111110 000000
Q ss_pred -cccc-----c----ccccccceEEeeeeeeeecceEEecCceEEeccEEEEccCCCC
Q 022896 66 -SVIN-----H----TDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKD 113 (290)
Q Consensus 66 -~~~~-----~----~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~ 113 (290)
.+.. + .+.+....+....|..++++.+.+.+|.++.++.||-|.|..+
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence 0000 0 0000111223567777777777778888999999999999774
No 198
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.74 E-value=3.6e-07 Score=73.22 Aligned_cols=208 Identities=17% Similarity=0.175 Sum_probs=104.8
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-----CCcEEEEcCCCCcccchhhhhh-hcCCccccccccccc----cccccceEEee
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-----SADVTLIDPKEYFEITWASLRA-MVEPSFGKRSVINHT----DYLVNGRIVAS 82 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-----g~~v~vie~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~ 82 (290)
+.||+|||||-.|.+.|+.|++ |.+|+|+|++..+......+.. .+...|.-...+++. +++++.. .
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~---e 162 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAR---E 162 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHH---H
Confidence 6899999999999999999962 7999999999876433222221 111111111111110 1111110 0
Q ss_pred eeeeeecceEEecCceEEeccEEEEccCCCCCCCCchHHHHHHHHHHHHHHhcCCeEEEEcCchhHHHHHHHHhhhCCCC
Q 022896 83 PAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEK 162 (290)
Q Consensus 83 ~v~~~~~~~v~~~~~~~~~~~~vi~a~G~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~iiG~g~~~~~~a~~l~~~~~~~ 162 (290)
....++...+ +-......++++|.-.. ...+.+..+...+. +.++- +--...|.++++..
T Consensus 163 hl~~~d~~~v---dl~f~P~GyL~LA~ee~-------ae~m~s~~kvQ~e~--GAk~e--------Lls~d~Lt~rfPwl 222 (509)
T KOG2853|consen 163 HLGILDSEQV---DLNFFPTGYLRLASEEE-------AEMMRSNSKVQNEL--GAKVE--------LLSPDELTKRFPWL 222 (509)
T ss_pred hhccccCCCC---CcccCCCceEEEcchhh-------HHHHHHhHHHHHhh--cchhc--------ccCHHHHhhhCCcc
Confidence 0011111111 11234455777774211 22233333333232 22221 11334566666654
Q ss_pred eE---EEEecCccccccCCh-hHHHHHHHHHHhCCcEEEeCceEeecccC----------CC----------ceeEEcCC
Q 022896 163 KV---TLVHKGSRLLEFIGP-KAGDKTRDWLISKKVDVKLGERVNLDSVS----------EG----------SDTYLTST 218 (290)
Q Consensus 163 ~v---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gi~~~~~~~v~~i~~~----------~~----------~~~v~~~~ 218 (290)
++ .+..-+-.--.-+++ .+...+++.....|+.+..+ +|..++++ ++ ++.+...+
T Consensus 223 ntegVaLa~lG~e~EGwfdpw~LLs~~rrk~~~lGv~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d 301 (509)
T KOG2853|consen 223 NTEGVALASLGVEKEGWFDPWALLSGIRRKAITLGVQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMND 301 (509)
T ss_pred cccceeeeecccccccccCHHHHHHHHHHHhhhhcceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEecCc
Confidence 43 222222111112444 47778888888899998866 44444433 22 13334444
Q ss_pred C--cEEeccEEEEccCCCCCchhhccccc
Q 022896 219 G--DTINADCHFLCTGKPVGSDWLKDTIL 245 (290)
Q Consensus 219 g--~~~~~d~vv~a~G~~~~~~~l~~~~~ 245 (290)
+ ..++++.+|.|.|.+. -......++
T Consensus 302 ~~~r~vk~al~V~aAGa~s-~QvArlAgI 329 (509)
T KOG2853|consen 302 ALARPVKFALCVNAAGAWS-GQVARLAGI 329 (509)
T ss_pred hhcCceeEEEEEeccCccH-HHHHHHhcc
Confidence 4 3688999999999885 444444444
No 199
>PLN02487 zeta-carotene desaturase
Probab=98.73 E-value=1.2e-07 Score=83.79 Aligned_cols=63 Identities=8% Similarity=0.043 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCC--c----eeEEc---CCCcEEeccEEEEccCCCCCchhhcc
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG--S----DTYLT---STGDTINADCHFLCTGKPVGSDWLKD 242 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~--~----~~v~~---~~g~~~~~d~vv~a~G~~~~~~~l~~ 242 (290)
.+.+.+.+.++++|.+++.++.|+++..+.+ + ..+.+ .+++.+.+|.||++++......++.+
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~ 367 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPE 367 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCc
Confidence 5888899999999999999999999987632 2 33444 33457899999999997643344443
No 200
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.72 E-value=8.4e-08 Score=74.20 Aligned_cols=93 Identities=24% Similarity=0.327 Sum_probs=66.5
Q ss_pred EEEcCchhHHHHHHHHhhhCCCCe-EEEEecCcccccc------------------------C-----------------
Q 022896 140 LIVGGGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLEF------------------------I----------------- 177 (290)
Q Consensus 140 ~iiG~g~~~~~~a~~l~~~~~~~~-v~~~~~~~~~~~~------------------------~----------------- 177 (290)
+|||+|++|+.+|..|.+. +.+ +.++++.+.+... +
T Consensus 1 ~IIGaG~aGl~~a~~l~~~--g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER--GIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT--T---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhC--CCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 6899999999999999874 666 9999976543110 0
Q ss_pred --ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896 178 --GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP 234 (290)
Q Consensus 178 --~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 234 (290)
.+++.+.+.+.+++.+++++.++.|++++.+++++.+.+.+++++.+|.||+|+|..
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SS
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeecc
Confidence 113445677888889999999999999999988899999998889999999999973
No 201
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.71 E-value=6.9e-08 Score=83.16 Aligned_cols=55 Identities=15% Similarity=0.035 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 236 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 236 (290)
.+...+.+.+. +..++.++.+++++.+++++.+.+.+|+++++|.||.|.|.+..
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 44444444442 35677899999998777788888889989999999999998753
No 202
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.70 E-value=1.5e-07 Score=80.58 Aligned_cols=100 Identities=17% Similarity=0.248 Sum_probs=72.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---cCChhHH---------HHHHHHHHhCCcEEEeCceEe
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---FIGPKAG---------DKTRDWLISKKVDVKLGERVN 203 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---~~~~~~~---------~~~~~~~~~~gi~~~~~~~v~ 203 (290)
.++++|||+|+.|+.+|..|..+....+|+++.+.+...- .+...+. ..-.+.+.+.|++++.++.|+
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 4689999999999999999987655668999987654311 1111110 001345677899999999997
Q ss_pred ecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896 204 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 204 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 237 (290)
.+..+. ..+.+.+|+++.+|.+|+|||..|..
T Consensus 83 ~id~~~--~~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGRDT--RELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEECCC--CEEEECCCCEEEcCEEEEccCCCCCC
Confidence 776644 34566788899999999999998753
No 203
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.70 E-value=1.6e-08 Score=87.76 Aligned_cols=46 Identities=33% Similarity=0.499 Sum_probs=39.7
Q ss_pred ccCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh
Q 022896 9 SEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL 54 (290)
Q Consensus 9 ~~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~ 54 (290)
.....++|+|||||+|||+||++|.. |++|+|+|.++..|+.....
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~ 57 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTF 57 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEE
Confidence 34457899999999999999999986 99999999999998765443
No 204
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.69 E-value=1.2e-07 Score=82.72 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCCce-eEEcCCCcEEeccEEEEccCCCCC
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPVG 236 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~~ 236 (290)
..+...+.+.+++.|++++.+ .++.+..+++.+ .+.. +++.+.++.||+|||-...
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 367888888899999999876 676665544443 3443 5668999999999997653
No 205
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.69 E-value=1.3e-07 Score=84.67 Aligned_cols=57 Identities=14% Similarity=-0.031 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCC----Cc-eeE---EcCCCc--EEeccEEEEccCCCC
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE----GS-DTY---LTSTGD--TINADCHFLCTGKPV 235 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~----~~-~~v---~~~~g~--~~~~d~vv~a~G~~~ 235 (290)
..+...+.+.+++.||+++.++.++++..++ +. ..+ ...+|+ .+.++.||+|||-..
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 3577778888888999999999999887554 33 333 234554 578999999998644
No 206
>PRK07538 hypothetical protein; Provisional
Probab=98.69 E-value=2.5e-07 Score=79.66 Aligned_cols=57 Identities=12% Similarity=-0.020 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHh-CC-cEEEeCceEeecccCCCceeEEcCCC-----cEEeccEEEEccCCCCC
Q 022896 180 KAGDKTRDWLIS-KK-VDVKLGERVNLDSVSEGSDTYLTSTG-----DTINADCHFLCTGKPVG 236 (290)
Q Consensus 180 ~~~~~~~~~~~~-~g-i~~~~~~~v~~i~~~~~~~~v~~~~g-----~~~~~d~vv~a~G~~~~ 236 (290)
.+.+.+.+.+.+ .| .+++.++++++++.+++++.+.+.++ +++.+|.||-|-|..+.
T Consensus 103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHH
Confidence 566666666654 35 57999999999887666544443332 48999999999998653
No 207
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.68 E-value=2.1e-07 Score=80.95 Aligned_cols=103 Identities=21% Similarity=0.196 Sum_probs=75.5
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------ccC-----C--hhHHHHHHHHHHhCCcEEEeCceEe
Q 022896 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------EFI-----G--PKAGDKTRDWLISKKVDVKLGERVN 203 (290)
Q Consensus 137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~------~~~-----~--~~~~~~~~~~~~~~gi~~~~~~~v~ 203 (290)
++++|||+|..|+.+|..|.+..+..+|+++++.+.+. +.+ . .++.....+.+++.|++++.++.++
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 37999999999999999998754567999999887531 111 1 1122233466788899999999998
Q ss_pred ecccCCCceeEEc-CCCcEEe--ccEEEEccCCCCCchh
Q 022896 204 LDSVSEGSDTYLT-STGDTIN--ADCHFLCTGKPVGSDW 239 (290)
Q Consensus 204 ~i~~~~~~~~v~~-~~g~~~~--~d~vv~a~G~~~~~~~ 239 (290)
.++.+++.+.+.. .+|+.+. +|.+|+|||..|..+-
T Consensus 81 ~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 119 (444)
T PRK09564 81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPP 119 (444)
T ss_pred EEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCC
Confidence 8887776666653 2355666 9999999999886543
No 208
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.68 E-value=7.2e-08 Score=83.06 Aligned_cols=64 Identities=16% Similarity=0.041 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcC---CCc--EEeccEEEEccCCCCCchhhccc
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS---TGD--TINADCHFLCTGKPVGSDWLKDT 243 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~---~g~--~~~~d~vv~a~G~~~~~~~l~~~ 243 (290)
..+.-.......++|.+++..++|+.+..+++-+.|... +|+ ++.++.||.|+|.+. ..++...
T Consensus 164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~-d~i~~~~ 232 (532)
T COG0578 164 ARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWV-DEILEMA 232 (532)
T ss_pred HHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccH-HHHHHhh
Confidence 367777778888999999999999999888874445433 233 688999999999985 5666554
No 209
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.66 E-value=2.7e-07 Score=81.83 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=34.6
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCccc
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI 49 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~ 49 (290)
...+||+|||+|.|||+||.++++ |.+|+|+||....++
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 346999999999999999999986 999999999887553
No 210
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.63 E-value=2.9e-07 Score=72.99 Aligned_cols=65 Identities=8% Similarity=-0.079 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-----eeEEcCCCcEEeccEEEEccCCCCCchhhccccc
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-----DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL 245 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-----~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~~ 245 (290)
.+...+-+.++..|-.+..+-++..+....+. +.+....++++++..+|.|+|.+. .......++
T Consensus 197 ~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s-dr~aa~sgc 266 (453)
T KOG2665|consen 197 SVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS-DRCAALSGC 266 (453)
T ss_pred HHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH-hHHHHHhCC
Confidence 45566667788999999999999888765553 445555567999999999999885 444444444
No 211
>PRK07236 hypothetical protein; Provisional
Probab=98.63 E-value=1.5e-07 Score=80.35 Aligned_cols=34 Identities=32% Similarity=0.448 Sum_probs=31.5
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
.+||+|||||++||++|..|++ |.+|+|+|+.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4899999999999999999986 999999999863
No 212
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.62 E-value=7.2e-08 Score=83.46 Aligned_cols=55 Identities=24% Similarity=0.206 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEcCCCcEEeccEEEEccCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
.+.+.|.+...+.|++++.++ |..+..++++ ..+.+.+|+++++|.+|=|+|...
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 678889999999999999886 6556655555 567888899999999999999864
No 213
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.61 E-value=9.8e-07 Score=78.98 Aligned_cols=57 Identities=12% Similarity=-0.032 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeE---EcCCCc--EEeccEEEEccCCCC
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTY---LTSTGD--TINADCHFLCTGKPV 235 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v---~~~~g~--~~~~d~vv~a~G~~~ 235 (290)
..+...+.+.+++.||+++.++.++++..+++. ..+ ...+|+ .+.++.||+|||-..
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 367777888888899999999999888765543 222 334564 588999999999753
No 214
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.61 E-value=3.3e-07 Score=82.48 Aligned_cols=39 Identities=23% Similarity=0.128 Sum_probs=34.0
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT 50 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~ 50 (290)
..+||+|||+|.|||+||.++++ |.+|+|+||....++.
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~ 88 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH 88 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence 35899999999999999999976 9999999998765543
No 215
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.60 E-value=3e-07 Score=82.48 Aligned_cols=56 Identities=11% Similarity=0.003 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCC-Cc-eeEE---cCCCc--EEeccEEEEccCCC
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GS-DTYL---TSTGD--TINADCHFLCTGKP 234 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~-~~-~~v~---~~~g~--~~~~d~vv~a~G~~ 234 (290)
..+...+.+.+++.||+++.++.++++..++ +. ..+. ..+|+ .+.++.||+|||--
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 211 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY 211 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 3577778888888999999999999887654 32 3332 34664 67899999999854
No 216
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.60 E-value=9.6e-07 Score=79.12 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHh-CCcEEEeCceEeecccCCCc-eeE---EcCCCc--EEeccEEEEccCCC
Q 022896 180 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGS-DTY---LTSTGD--TINADCHFLCTGKP 234 (290)
Q Consensus 180 ~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~-~~v---~~~~g~--~~~~d~vv~a~G~~ 234 (290)
.+...+.+.+.+ .||+++.++.++++..+++. ..+ ...+|+ .+.++.||+|||-.
T Consensus 138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 566777777765 69999999999888765554 222 334664 57899999999965
No 217
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.59 E-value=4.5e-08 Score=84.58 Aligned_cols=39 Identities=38% Similarity=0.539 Sum_probs=34.4
Q ss_pred hccCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 8 QSEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 8 ~~~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
++..+++||+||||||+|+++|+.|++ |++|+|+|+...
T Consensus 34 ~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 34 KLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 355568999999999999999999986 999999999753
No 218
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.58 E-value=8.8e-07 Score=78.29 Aligned_cols=101 Identities=18% Similarity=0.261 Sum_probs=80.0
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc--ccc------------ccCChhHHHHHHHHHHhCCcEEEeCc
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS--RLL------------EFIGPKAGDKTRDWLISKKVDVKLGE 200 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~gi~~~~~~ 200 (290)
...+++|||+|+.|+.+|..+.. .+.+++++.... .+. ....+++...+.+.+++.|++++.++
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~--~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~ 288 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAAR--KGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQ 288 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCC
Confidence 45789999999999999999986 588998886311 110 01234567778888899999999999
Q ss_pred eEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896 201 RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 201 ~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 237 (290)
.|+.+..+++...+.+.+|+.+.+|.+|+|+|..+..
T Consensus 289 ~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 289 RAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCC
Confidence 9988877766677777888889999999999987643
No 219
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.58 E-value=3.1e-07 Score=77.32 Aligned_cols=32 Identities=38% Similarity=0.454 Sum_probs=30.6
Q ss_pred cEEEEcCChHHHHHHHHhccCCcEEEEcCCCC
Q 022896 15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY 46 (290)
Q Consensus 15 dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~ 46 (290)
||+|||+|.|||++|..|.+.++|+|+.|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPSFRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCCCcEEEEeCCCC
Confidence 89999999999999999999999999999874
No 220
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.57 E-value=3.3e-07 Score=67.59 Aligned_cols=34 Identities=38% Similarity=0.645 Sum_probs=28.3
Q ss_pred eEEeeeeeeeecc----eEEecCceEEeccEEEEccCC
Q 022896 78 RIVASPAINITEN----EVLTAEGRRVVYDYLVIATGH 111 (290)
Q Consensus 78 ~~~~~~v~~~~~~----~v~~~~~~~~~~~~vi~a~G~ 111 (290)
.++...|+.+... .+.+.+|..+.+|.||+|+|.
T Consensus 118 ~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 118 RHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred EEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 4567788888765 478889999999999999996
No 221
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.57 E-value=9.1e-07 Score=79.61 Aligned_cols=56 Identities=9% Similarity=-0.029 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeeccc-CCCc-eeE---EcCCCc--EEeccEEEEccCCC
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSV-SEGS-DTY---LTSTGD--TINADCHFLCTGKP 234 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~-~~~~-~~v---~~~~g~--~~~~d~vv~a~G~~ 234 (290)
..+...+.+.+++.|++++.++.++++.. +++. ..+ ...+|+ .+.++.||+|||--
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 36777888888889999999999998776 3433 333 234564 57899999999743
No 222
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.55 E-value=1.4e-06 Score=78.03 Aligned_cols=55 Identities=15% Similarity=-0.076 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCce-eE---EcCCCc--EEeccEEEEccCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TY---LTSTGD--TINADCHFLCTGKP 234 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v---~~~~g~--~~~~d~vv~a~G~~ 234 (290)
.+...+.+.+++.|++++.++.++++..+++.+ .+ ...+|+ .+.++.||+|+|-.
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 566777787888899999999999887665542 22 234564 58899999999964
No 223
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.55 E-value=2.8e-06 Score=73.70 Aligned_cols=104 Identities=13% Similarity=0.205 Sum_probs=76.0
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--------------------------------------
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------------------------------------- 176 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~-------------------------------------- 176 (290)
..++|+|||+|++|+-+|..+.. .+.+++++++.+.+...
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~--~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m 86 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRR--EGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECM 86 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHh--cCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhc
Confidence 45899999999999999999986 37788888865432110
Q ss_pred ----C------------------ChhHHHHHHHHHHhCCcE--EEeCceEeecccCCCceeEEcCCC--c--EEeccEEE
Q 022896 177 ----I------------------GPKAGDKTRDWLISKKVD--VKLGERVNLDSVSEGSDTYLTSTG--D--TINADCHF 228 (290)
Q Consensus 177 ----~------------------~~~~~~~~~~~~~~~gi~--~~~~~~v~~i~~~~~~~~v~~~~g--~--~~~~d~vv 228 (290)
+ ..++.+.+.+.++..|++ ++++++|++++..++.+.+.+.++ . +..+|.||
T Consensus 87 ~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 87 GYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred cCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEE
Confidence 0 024566677777888988 889999999988777777765432 2 46799999
Q ss_pred EccCC--CCCchhh
Q 022896 229 LCTGK--PVGSDWL 240 (290)
Q Consensus 229 ~a~G~--~~~~~~l 240 (290)
+|+|. .|+.+-+
T Consensus 167 vAtG~~~~P~~P~i 180 (461)
T PLN02172 167 VCNGHYTEPNVAHI 180 (461)
T ss_pred EeccCCCCCcCCCC
Confidence 99994 4544433
No 224
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.55 E-value=6e-07 Score=76.00 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=72.6
Q ss_pred eEEEEcCchhHHHHHHHHhhh-CCCCeEEEEecCccccc--cC---------ChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 138 SILIVGGGPTGVELAGEIAVD-FPEKKVTLVHKGSRLLE--FI---------GPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 138 ~v~iiG~g~~~~~~a~~l~~~-~~~~~v~~~~~~~~~~~--~~---------~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
+++|||+|..|+.+|..+..+ .+..+|+++++.+.+.- .+ ..++...+.+.+++.|++++.+ .++.+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 589999999999999988643 35789999998765321 00 1123334566677889999876 67666
Q ss_pred ccCCCceeEEcCCCcEEeccEEEEccCCCCCchhh
Q 022896 206 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL 240 (290)
Q Consensus 206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l 240 (290)
+.+.+ .+.+.+|+++.+|.+|+|+|..+..+-+
T Consensus 80 d~~~~--~V~~~~g~~~~yD~LviAtG~~~~~~~i 112 (364)
T TIGR03169 80 DPDRR--KVLLANRPPLSYDVLSLDVGSTTPLSGV 112 (364)
T ss_pred ecccC--EEEECCCCcccccEEEEccCCCCCCCCC
Confidence 65544 5667788889999999999998865443
No 225
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.55 E-value=1.3e-06 Score=77.34 Aligned_cols=100 Identities=23% Similarity=0.261 Sum_probs=79.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc--cc------------cccCChhHHHHHHHHHHhCCcEEEeCce
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS--RL------------LEFIGPKAGDKTRDWLISKKVDVKLGER 201 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~--~~------------~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 201 (290)
..+++|||+|+.|+.+|..+.. .+.++.++.... .. .....+++.+.+.+.+++.|++++.++.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~--~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~ 288 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAAR--KGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQR 288 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCE
Confidence 4689999999999999999986 488888886421 00 0012336778888889999999999999
Q ss_pred EeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896 202 VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 202 v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 237 (290)
++.+...++...+.+.+|+++.+|.+|+|+|..+..
T Consensus 289 V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 289 ASKLEPAAGLIEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 998887766677777888889999999999987643
No 226
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.54 E-value=1.3e-06 Score=78.74 Aligned_cols=37 Identities=27% Similarity=0.252 Sum_probs=33.1
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE 48 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~ 48 (290)
..+||+|||||.|||+||..+++ |.+|+|+||....+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 46899999999999999999976 99999999987544
No 227
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.54 E-value=1.4e-06 Score=78.13 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=34.3
Q ss_pred cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCccc
Q 022896 10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI 49 (290)
Q Consensus 10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~ 49 (290)
....+||+|||||.|||+||.++++ |.+|+||||....++
T Consensus 9 ~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g 49 (591)
T PRK07057 9 PRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS 49 (591)
T ss_pred ccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 3456899999999999999999976 999999999865443
No 228
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.54 E-value=8.4e-07 Score=75.44 Aligned_cols=101 Identities=15% Similarity=0.080 Sum_probs=73.1
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc---ccC--------C-hhHHH-HHHHHHHhCCcEEEeCceEe
Q 022896 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---EFI--------G-PKAGD-KTRDWLISKKVDVKLGERVN 203 (290)
Q Consensus 137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~---~~~--------~-~~~~~-~~~~~~~~~gi~~~~~~~v~ 203 (290)
++++|||+|..|+.+|..+.+..+..+++++.+.+... +.+ . .++.. ...+.+++.|++++.++.|+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 58999999999999999998766778999998766421 111 0 01111 13355677899999999998
Q ss_pred ecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhh
Q 022896 204 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL 240 (290)
Q Consensus 204 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l 240 (290)
.++.+.. .+.+ ++..+.+|.+|+|||..|..+-+
T Consensus 83 ~id~~~~--~v~~-~~~~~~yd~LVlATG~~~~~p~i 116 (377)
T PRK04965 83 DIDAEAQ--VVKS-QGNQWQYDKLVLATGASAFVPPI 116 (377)
T ss_pred EEECCCC--EEEE-CCeEEeCCEEEECCCCCCCCCCC
Confidence 8876544 3333 56689999999999998865433
No 229
>PRK07208 hypothetical protein; Provisional
Probab=98.53 E-value=8e-08 Score=84.38 Aligned_cols=55 Identities=15% Similarity=0.035 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCce--eEE--cCCCc--EEeccEEEEccCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD--TYL--TSTGD--TINADCHFLCTGKP 234 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~--~v~--~~~g~--~~~~d~vv~a~G~~ 234 (290)
.+.+.+.+.+++.|++++.+++|+++..++++. .+. ..+|+ ++.+|.||++++..
T Consensus 219 ~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 219 QLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred hHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence 677888899999999999999999998877652 222 23453 58899999998754
No 230
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.53 E-value=1.1e-06 Score=76.12 Aligned_cols=102 Identities=18% Similarity=0.138 Sum_probs=72.6
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------ccCC----hhHHHHH----HHHHHhCCcEEEeCceE
Q 022896 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------EFIG----PKAGDKT----RDWLISKKVDVKLGERV 202 (290)
Q Consensus 137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~------~~~~----~~~~~~~----~~~~~~~gi~~~~~~~v 202 (290)
++++|||+|..|+.+|..|++..++.+|+++++.+.+. +.+. ......+ .+..++.|++++.++.|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 48999999999999999998765678999999886432 1100 0011111 23335679999999999
Q ss_pred eecccCCCceeEEcCC-Cc--EEeccEEEEccCCCCCch
Q 022896 203 NLDSVSEGSDTYLTST-GD--TINADCHFLCTGKPVGSD 238 (290)
Q Consensus 203 ~~i~~~~~~~~v~~~~-g~--~~~~d~vv~a~G~~~~~~ 238 (290)
+.++.+++.+.+...+ ++ ++.+|.+|+|||..|+.+
T Consensus 82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~ 120 (438)
T PRK13512 82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSL 120 (438)
T ss_pred EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCC
Confidence 9888877666665432 22 468999999999998643
No 231
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.53 E-value=4.9e-07 Score=80.88 Aligned_cols=56 Identities=13% Similarity=-0.003 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccC-CCc-eeEE---cCCCc--EEeccEEEEccCCC
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVS-EGS-DTYL---TSTGD--TINADCHFLCTGKP 234 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~-~~~-~~v~---~~~g~--~~~~d~vv~a~G~~ 234 (290)
..+...+.+.+.+.|++++.++.++++..+ ++. ..+. ..+|+ .+.++.||+|||--
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA 205 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence 357777777778889999999999888764 333 3332 34564 57899999999854
No 232
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.50 E-value=8.3e-07 Score=82.29 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=75.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhC--CCCeEEEEecCcccc------c-cCC----hhHHHHHHHHHHhCCcEEEeCceE
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDF--PEKKVTLVHKGSRLL------E-FIG----PKAGDKTRDWLISKKVDVKLGERV 202 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~--~~~~v~~~~~~~~~~------~-~~~----~~~~~~~~~~~~~~gi~~~~~~~v 202 (290)
.++++|||+|..|+.+|..|..+. .+.+|+++.+.+.+. + .+. .++.....+++++.||+++.++.+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V 82 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA 82 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence 358999999999999999987542 357899998876642 0 011 122222356678899999999998
Q ss_pred eecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhc
Q 022896 203 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK 241 (290)
Q Consensus 203 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~ 241 (290)
+.+..+ ...+.+.+|+++.||.+|+|||..|..+-++
T Consensus 83 ~~Id~~--~~~V~~~~G~~i~yD~LVIATGs~p~~p~ip 119 (847)
T PRK14989 83 ITINRQ--EKVIHSSAGRTVFYDKLIMATGSYPWIPPIK 119 (847)
T ss_pred EEEeCC--CcEEEECCCcEEECCEEEECCCCCcCCCCCC
Confidence 766553 3456677888899999999999988654443
No 233
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.47 E-value=2.1e-06 Score=76.39 Aligned_cols=56 Identities=18% Similarity=0.155 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEE---cCCCc--EEeccEEEEccCCC
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYL---TSTGD--TINADCHFLCTGKP 234 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~---~~~g~--~~~~d~vv~a~G~~ 234 (290)
..+...+.+.+++.||+++.++.++++..++++ ..+. ..+|+ .+.++.||+|||-.
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 467777888888899999999999988765543 2222 24564 58899999999964
No 234
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.45 E-value=1.2e-06 Score=76.97 Aligned_cols=57 Identities=16% Similarity=0.070 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHh-CCcEEEeCceEeecccCCCce-eEEcCC-C--cEEeccEEEEccCCCC
Q 022896 179 PKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTST-G--DTINADCHFLCTGKPV 235 (290)
Q Consensus 179 ~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~-~v~~~~-g--~~~~~d~vv~a~G~~~ 235 (290)
..+...+.+.+++ .||+++.++.++++..+++.+ .+...+ + ..+.++.||+|+|-..
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 3677778888887 699999999999887665542 233222 3 3689999999999754
No 235
>PLN02268 probable polyamine oxidase
Probab=98.43 E-value=2.1e-07 Score=80.76 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=36.8
Q ss_pred CcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896 193 KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 233 (290)
Q Consensus 193 gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 233 (290)
+++++.+++|+++..+++++.+++.+|+++.+|.||+|++.
T Consensus 210 ~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 210 GLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred cCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence 67899999999999888888888888888999999999864
No 236
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.43 E-value=8.1e-07 Score=78.17 Aligned_cols=32 Identities=34% Similarity=0.374 Sum_probs=29.8
Q ss_pred CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
+||+|||||++|+.+|..+++ |.+|+|+|++.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 699999999999999999976 99999999874
No 237
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.43 E-value=2.5e-07 Score=71.76 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=33.9
Q ss_pred CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccch
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW 51 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~ 51 (290)
.+|+|||+|++|++||+.|+. |.+|+||||+.-.|+..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRl 40 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRL 40 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccch
Confidence 479999999999999999986 99999999999776543
No 238
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.42 E-value=2.9e-06 Score=73.22 Aligned_cols=101 Identities=11% Similarity=0.036 Sum_probs=72.4
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--C---------ChhHHHHHHHHHHhCCcEEEeCceEe
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--I---------GPKAGDKTRDWLISKKVDVKLGERVN 203 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~gi~~~~~~~v~ 203 (290)
..++++|||+|..|+.+|..|.. ...+|+++++.+.+.-. + .......+.+.++..+++++. ..|+
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~--~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~ 85 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDP--KKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR-AVVY 85 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCc--CCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE-EEEE
Confidence 45799999999999999988863 46789999987764210 0 112333355666777888875 4787
Q ss_pred ecccCCCceeEEc--------CCCcEEeccEEEEccCCCCCch
Q 022896 204 LDSVSEGSDTYLT--------STGDTINADCHFLCTGKPVGSD 238 (290)
Q Consensus 204 ~i~~~~~~~~v~~--------~~g~~~~~d~vv~a~G~~~~~~ 238 (290)
.++.+++.+.+.. .+|.+++||.+|+|+|..+..+
T Consensus 86 ~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~ 128 (424)
T PTZ00318 86 DVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF 128 (424)
T ss_pred EEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCC
Confidence 7877766655521 4566899999999999987543
No 239
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=2.5e-07 Score=78.58 Aligned_cols=41 Identities=34% Similarity=0.383 Sum_probs=36.5
Q ss_pred CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL 54 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~ 54 (290)
++|+|+|||+|||+||++|+. |++|+|+|+++.+|+-....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~ 42 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASW 42 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeee
Confidence 579999999999999999986 99999999999998665443
No 240
>PLN02576 protoporphyrinogen oxidase
Probab=98.40 E-value=3.1e-07 Score=81.06 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=36.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCCcccchhh
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYFEITWAS 53 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~~~~~~~~ 53 (290)
.++||+|||||++||+||++|++ |++|+|+|+++.+|+....
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence 46899999999999999999974 8999999999998876443
No 241
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.40 E-value=3e-07 Score=79.33 Aligned_cols=36 Identities=36% Similarity=0.459 Sum_probs=29.5
Q ss_pred cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccc
Q 022896 15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT 50 (290)
Q Consensus 15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~ 50 (290)
||||||||++|++||+.+++ |.+|+|+|+.+.+|+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~ 37 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGM 37 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCc
Confidence 89999999999999999987 9999999999987754
No 242
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.39 E-value=3e-07 Score=78.50 Aligned_cols=34 Identities=24% Similarity=0.467 Sum_probs=31.6
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
.+||+||||||+|+++|..|++ |++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 5899999999999999999976 999999999874
No 243
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.39 E-value=3.4e-07 Score=76.78 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=34.5
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT 50 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~ 50 (290)
++|++|||||++|+++|++|++ |.+|+|+|+++..|+.
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~ 39 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN 39 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 3799999999999999999986 9999999999888764
No 244
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.38 E-value=1.4e-06 Score=80.69 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=74.4
Q ss_pred EEEEcCchhHHHHHHHHhhhC-CCCeEEEEecCccccc---cCC---------hhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 139 ILIVGGGPTGVELAGEIAVDF-PEKKVTLVHKGSRLLE---FIG---------PKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 139 v~iiG~g~~~~~~a~~l~~~~-~~~~v~~~~~~~~~~~---~~~---------~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
++|||+|..|+.+|..+.... .+.+|+++.+.+.+.- .+. .++.....+++++.|++++.++.|+.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 589999999999999987643 4569999998776420 011 112222356778899999999999877
Q ss_pred ccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhc
Q 022896 206 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK 241 (290)
Q Consensus 206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~ 241 (290)
+.+. ..+.+.+|+++.||.+|+|||..|+.+-++
T Consensus 81 d~~~--k~V~~~~g~~~~yD~LVlATGs~p~~p~ip 114 (785)
T TIGR02374 81 DTDQ--KQVITDAGRTLSYDKLILATGSYPFILPIP 114 (785)
T ss_pred ECCC--CEEEECCCcEeeCCEEEECCCCCcCCCCCC
Confidence 6543 456777888999999999999988654433
No 245
>PLN02568 polyamine oxidase
Probab=98.37 E-value=3.6e-07 Score=80.64 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896 181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 233 (290)
Q Consensus 181 ~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 233 (290)
+.+.+.+.+. +-++++++.|+.|+.+++++.+.+.+|+++.+|.||+++..
T Consensus 244 Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 244 VIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred HHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCH
Confidence 4444444332 33689999999999888888898889988999999998764
No 246
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.36 E-value=2.1e-05 Score=63.03 Aligned_cols=105 Identities=16% Similarity=0.137 Sum_probs=69.8
Q ss_pred ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCc--EEeccEEEEccCCCCCchhhcc------c--ccc
Q 022896 178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGD--TINADCHFLCTGKPVGSDWLKD------T--ILK 246 (290)
Q Consensus 178 ~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~--~~~~d~vv~a~G~~~~~~~l~~------~--~~~ 246 (290)
.-++.+.+...+++.|.-+..+.+|.......+. ..+-+.+.. .+.+|..|+|+|.--+..+..+ - .+.
T Consensus 257 GiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ld 336 (421)
T COG3075 257 GIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLD 336 (421)
T ss_pred hhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhcc
Confidence 3478888999999999999999999888777776 344455554 4679999999997543221111 0 011
Q ss_pred c-------ccCC----------CCcEEecCCcccc----CCCCeEEeccccCccccc
Q 022896 247 D-------SLDT----------HGMLMVDENLRVK----GQKNIFAIGDITDIRVSA 282 (290)
Q Consensus 247 ~-------~~~~----------~g~~~v~~~~~~~----~~~~vfa~Gd~~~~~~~~ 282 (290)
+ +|.. .-.+.+|++++.. .+.|+|++|.+.+++++.
T Consensus 337 i~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi 393 (421)
T COG3075 337 ILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPI 393 (421)
T ss_pred cccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHH
Confidence 1 1111 1235566666652 257999999999998875
No 247
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.35 E-value=3.9e-07 Score=77.93 Aligned_cols=33 Identities=36% Similarity=0.522 Sum_probs=30.5
Q ss_pred CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
+||+||||||+|++||+.|++ |++|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 589999999999999999986 999999999764
No 248
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.34 E-value=4.3e-07 Score=80.02 Aligned_cols=56 Identities=14% Similarity=0.060 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCC-----cEEeccEEEEccCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTG-----DTINADCHFLCTGKPV 235 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g-----~~~~~d~vv~a~G~~~ 235 (290)
.+.+.+.+.+++.|.+++.+++|++|..+++. ..+...++ +++.+|.||+++....
T Consensus 233 ~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~ 294 (492)
T TIGR02733 233 TLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQS 294 (492)
T ss_pred HHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHH
Confidence 68888999999999999999999999887664 23333333 5789999999987643
No 249
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.33 E-value=3.5e-06 Score=79.07 Aligned_cols=92 Identities=20% Similarity=0.042 Sum_probs=71.4
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
.+++|+|||+|+.|+.+|..|.. .+.+|+++++.+.+... ++.++.....+.+++.|++++.++.+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG-- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG-- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec--
Confidence 57999999999999999999996 59999999987755432 234566667778889999999988662
Q ss_pred ccCCCceeEEcCCCcEEeccEEEEccCCC-CC
Q 022896 206 SVSEGSDTYLTSTGDTINADCHFLCTGKP-VG 236 (290)
Q Consensus 206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~-~~ 236 (290)
..+.+.+.....+|.|++|+|.+ |.
T Consensus 381 ------~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 381 ------KTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred ------cEEeHHHhccccCCEEEEeCCCCCCC
Confidence 23444555556799999999984 43
No 250
>PRK06126 hypothetical protein; Provisional
Probab=98.33 E-value=5.2e-07 Score=80.54 Aligned_cols=38 Identities=26% Similarity=0.438 Sum_probs=33.5
Q ss_pred ccCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 9 SEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 9 ~~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
|+...+||+||||||+||++|..|++ |++|+|||+.+.
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 34456999999999999999999986 999999999864
No 251
>PRK07236 hypothetical protein; Provisional
Probab=98.32 E-value=7e-06 Score=70.11 Aligned_cols=100 Identities=16% Similarity=0.064 Sum_probs=73.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------CChhHHHHH------------------------
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------IGPKAGDKT------------------------ 185 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~------~~~~~~~~~------------------------ 185 (290)
..+|+|||+|.+|+.+|..|.+ .+.+|+++++.+..... +.+...+.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 83 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRR--AGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD 83 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence 4789999999999999999997 58999999987643211 111111111
Q ss_pred -------------------HHHHHh--CCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896 186 -------------------RDWLIS--KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 186 -------------------~~~~~~--~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 237 (290)
.+.+.+ .+++++.++.+++++.+++.+.+.+.+|+++.+|.||.|-|..+..
T Consensus 84 g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 84 GRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred CCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchH
Confidence 111111 2457899999999988877888888999999999999999976543
No 252
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.30 E-value=3.3e-06 Score=67.38 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=39.1
Q ss_pred cEEEEcCChHHHHHHHHhc-cCCcEEEEcCCCCcccchhhhhhhcCCc
Q 022896 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS 61 (290)
Q Consensus 15 dvvIIGaG~aGl~~A~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~ 61 (290)
-|+|||+|.|||+++..+- ++..|+++|+....|++.....+.++..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA 58 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGA 58 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCC
Confidence 5999999999999999995 5777999999999998876666555443
No 253
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.30 E-value=2.9e-06 Score=72.85 Aligned_cols=97 Identities=19% Similarity=0.272 Sum_probs=64.6
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeec
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITE 89 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~ 89 (290)
...+++|||||+.|+-.|..+++ |.+|||+|+.+.+-... .++........+.+ ....+. ...+..+..
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~-------D~ei~~~~~~~l~~--~gv~i~~~~~v~~~~~ 242 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGE-------DPEISKELTKQLEK--GGVKILLNTKVTAVEK 242 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcC-------CHHHHHHHHHHHHh--CCeEEEccceEEEEEe
Confidence 45889999999999999999987 99999999998754211 11111111111111 122232 344444443
Q ss_pred c----eEEecCce--EEeccEEEEccCCCCCCCC
Q 022896 90 N----EVLTAEGR--RVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 90 ~----~v~~~~~~--~~~~~~vi~a~G~~~~~p~ 117 (290)
. .+.++++. .+.+|.+++|+|-.|+.++
T Consensus 243 ~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 243 KDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred cCCeEEEEEecCCCCEEEeeEEEEccCCccCCCC
Confidence 2 35555555 6889999999999999886
No 254
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.29 E-value=2.3e-06 Score=66.02 Aligned_cols=103 Identities=26% Similarity=0.319 Sum_probs=72.2
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---CCh-----------hHH--H--HHHHHHHhCCcEEEeC
Q 022896 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---IGP-----------KAG--D--KTRDWLISKKVDVKLG 199 (290)
Q Consensus 138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---~~~-----------~~~--~--~~~~~~~~~gi~~~~~ 199 (290)
+++|||+|+.|+.+|..|.. .+.++.++.+.+..... ... ... . .+.+.+...+++++.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~--~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 78 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR--PGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLN 78 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHH
T ss_pred CEEEEecHHHHHHHHHHHhc--CCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeec
Confidence 68999999999999999995 69999999766532110 000 011 1 3344457789999888
Q ss_pred ceEeecccCCCc-----eeE---EcCCCcEEeccEEEEccCCCCCchhhcc
Q 022896 200 ERVNLDSVSEGS-----DTY---LTSTGDTINADCHFLCTGKPVGSDWLKD 242 (290)
Q Consensus 200 ~~v~~i~~~~~~-----~~v---~~~~g~~~~~d~vv~a~G~~~~~~~l~~ 242 (290)
.++.++....+. ..+ ...++.++.+|.+|+|+|..|+.+.++.
T Consensus 79 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g 129 (201)
T PF07992_consen 79 AKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPG 129 (201)
T ss_dssp HTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTT
T ss_pred cccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCC
Confidence 999888776663 122 3455668999999999998876554443
No 255
>PLN02661 Putative thiazole synthesis
Probab=98.28 E-value=8.3e-07 Score=72.99 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=33.2
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCCcc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYFE 48 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~~~ 48 (290)
.++||+|||||++|+++|++|++ |++|+|||++...+
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~G 129 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPG 129 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccc
Confidence 46899999999999999999973 89999999987765
No 256
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.27 E-value=9.3e-06 Score=68.26 Aligned_cols=99 Identities=21% Similarity=0.231 Sum_probs=72.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----------CChhHHHHHHHHHHhCC-cEEEeCceEe
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----------IGPKAGDKTRDWLISKK-VDVKLGERVN 203 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g-i~~~~~~~v~ 203 (290)
.++++|+|+|..|+.++..|....++.+++++++.+.++-. ........+.+.+++.+ ++++.+ +|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence 57999999999999999999874224789999998765321 12234445777777555 888866 565
Q ss_pred ecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896 204 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 204 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 237 (290)
+|+.+. .+|.+.++..+.||.+|+++|+.++.
T Consensus 82 ~ID~~~--k~V~~~~~~~i~YD~LVvalGs~~~~ 113 (405)
T COG1252 82 DIDRDA--KKVTLADLGEISYDYLVVALGSETNY 113 (405)
T ss_pred EEcccC--CEEEeCCCccccccEEEEecCCcCCc
Confidence 555544 45666666789999999999998865
No 257
>PLN02985 squalene monooxygenase
Probab=98.26 E-value=8.6e-07 Score=78.01 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=32.9
Q ss_pred cCCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 10 ~~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
....+||+|||||++|+++|..|++ |++|+|+|+...
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 3457999999999999999999976 999999999753
No 258
>PTZ00367 squalene epoxidase; Provisional
Probab=98.24 E-value=8.3e-07 Score=78.68 Aligned_cols=34 Identities=26% Similarity=0.542 Sum_probs=31.6
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
..+||+|||||++|+++|..|++ |++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999986 99999999976
No 259
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.24 E-value=2.3e-06 Score=74.08 Aligned_cols=64 Identities=20% Similarity=0.288 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccC--CCc-eeEEcC-CCcEEeccEEEEccC-CCCCchhhcc
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVS--EGS-DTYLTS-TGDTINADCHFLCTG-KPVGSDWLKD 242 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~--~~~-~~v~~~-~g~~~~~d~vv~a~G-~~~~~~~l~~ 242 (290)
..+...+.+.+++.|++++.++.++++..+ ++. ..+... ++..+.++.||+|+| +..|.+++..
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~ 191 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK 191 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence 357788888899999999999999998765 233 333332 335789999999999 4445555544
No 260
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=9.9e-07 Score=75.20 Aligned_cols=33 Identities=33% Similarity=0.373 Sum_probs=30.3
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
.+||+|||||-||+.||+..++ |.+++++--+-
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 4999999999999999999988 99999998665
No 261
>PRK10262 thioredoxin reductase; Provisional
Probab=98.24 E-value=2.3e-05 Score=65.16 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=69.5
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------------cc-----CChhHHHHHHHHHHhCCcEEE
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------------EF-----IGPKAGDKTRDWLISKKVDVK 197 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~------------~~-----~~~~~~~~~~~~~~~~gi~~~ 197 (290)
..++++|||+|+.|+.+|..+..+ +.++.+++..+ .. +. ..+.+.+.+.+.....+++++
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~--g~~~~~ie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARA--NLQPVLITGME-KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEII 81 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHC--CCCeEEEEeec-CCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 467899999999999999999864 66777775321 11 01 112346667777777888887
Q ss_pred eCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896 198 LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD 238 (290)
Q Consensus 198 ~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~ 238 (290)
.+ .++.++..++.+.+...++ .+.+|.||+|+|..|+.+
T Consensus 82 ~~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG~~~~~~ 120 (321)
T PRK10262 82 FD-HINKVDLQNRPFRLTGDSG-EYTCDALIIATGASARYL 120 (321)
T ss_pred ee-EEEEEEecCCeEEEEecCC-EEEECEEEECCCCCCCCC
Confidence 65 4556666666566655444 689999999999987643
No 262
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.23 E-value=1e-06 Score=72.61 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=33.5
Q ss_pred CCCcEEEEcCChHHHHHHHHhc-------cCCcEEEEcCCCCcccc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQ-------FSADVTLIDPKEYFEIT 50 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~-------~g~~v~vie~~~~~~~~ 50 (290)
..+||+|||||||||+||.+|+ +..+|.|+|+...+|++
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Ggh 120 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGH 120 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCc
Confidence 4699999999999999999984 26899999999976643
No 263
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.20 E-value=1.6e-06 Score=73.26 Aligned_cols=35 Identities=37% Similarity=0.352 Sum_probs=31.3
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF 47 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~ 47 (290)
+.||+|||||++|+.+|+.|++ |.+|+|+|+.+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 4799999999999999999976 9999999986643
No 264
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.19 E-value=7.2e-06 Score=71.52 Aligned_cols=83 Identities=16% Similarity=0.018 Sum_probs=60.8
Q ss_pred CeEEEEecCccccccCCh-hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCCCchh
Q 022896 162 KKVTLVHKGSRLLEFIGP-KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSDW 239 (290)
Q Consensus 162 ~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~ 239 (290)
....++.+.+.. .+| .+...+....++.|..++++|.|+++....++ ..|++.-| .+++..+|-|+|.+. .+.
T Consensus 172 v~g~Ly~P~DG~---~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA-r~V 246 (856)
T KOG2844|consen 172 VYGGLYSPGDGV---MDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA-REV 246 (856)
T ss_pred heeeeecCCCcc---cCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH-HHh
Confidence 344566665543 333 57888999999999999999999999765554 67888888 699999999999996 344
Q ss_pred hccccccccc
Q 022896 240 LKDTILKDSL 249 (290)
Q Consensus 240 l~~~~~~~~~ 249 (290)
-...++.+++
T Consensus 247 g~m~gvkvPL 256 (856)
T KOG2844|consen 247 GAMAGVKVPL 256 (856)
T ss_pred hhhcCCcccc
Confidence 4444444443
No 265
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.18 E-value=1.8e-05 Score=73.89 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=66.7
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
.+++|+|||+|++|+.+|..|+. .+.+|+++++.+.+... .+.+......+.+++.|++++.++.+ .+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar--~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di 614 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLAR--AGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DL 614 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EE
Confidence 46899999999999999999986 48899999987654322 12344455557788889999999876 12
Q ss_pred ccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 206 SVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
. ..+.....+|.||+|||.++
T Consensus 615 ~---------le~L~~~gYDaVILATGA~~ 635 (1019)
T PRK09853 615 T---------VEQLKNEGYDYVVVAIGADK 635 (1019)
T ss_pred E---------hhhheeccCCEEEECcCCCC
Confidence 2 12233456999999999875
No 266
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.18 E-value=1.4e-05 Score=70.44 Aligned_cols=142 Identities=16% Similarity=0.165 Sum_probs=88.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC--------------------------------------
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-------------------------------------- 177 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-------------------------------------- 177 (290)
.|+|+|||+|.+|+-.+..+.+ .+.+++++++.+.++...
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e--~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p 78 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLE--EGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP 78 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHH--TT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred CCEEEEECccHHHHHHHHHHHH--CCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence 3799999999999999999987 488999999776543210
Q ss_pred ----ChhHHHHHHHHHHhCCc--EEEeCceEeecccCC-----CceeEEcCC-Cc--EEeccEEEEccCCCC--Cchhhc
Q 022896 178 ----GPKAGDKTRDWLISKKV--DVKLGERVNLDSVSE-----GSDTYLTST-GD--TINADCHFLCTGKPV--GSDWLK 241 (290)
Q Consensus 178 ----~~~~~~~~~~~~~~~gi--~~~~~~~v~~i~~~~-----~~~~v~~~~-g~--~~~~d~vv~a~G~~~--~~~~l~ 241 (290)
..++.+.++..++..++ .+.++++|++++..+ +++.+++.+ |+ +..+|.||+|+|... +.|.-.
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~ 158 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPS 158 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhh
Confidence 12567778888888887 478999999887643 236666544 42 456999999999753 323200
Q ss_pred ccccccccCCCCcEEecCCcccc---CCCCeEEeccccCccccc
Q 022896 242 DTILKDSLDTHGMLMVDENLRVK---GQKNIFAIGDITDIRVSA 282 (290)
Q Consensus 242 ~~~~~~~~~~~g~~~v~~~~~~~---~~~~vfa~Gd~~~~~~~~ 282 (290)
-.+++ .-.|.+.-...++.. ..++|-++|-..++.+.+
T Consensus 159 ~~G~e---~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa 199 (531)
T PF00743_consen 159 FPGLE---KFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIA 199 (531)
T ss_dssp -CTGG---GHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHH
T ss_pred hhhhh---cCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHH
Confidence 12221 124666655554432 367899999876555443
No 267
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.18 E-value=7.4e-06 Score=71.14 Aligned_cols=94 Identities=21% Similarity=0.302 Sum_probs=61.3
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc--ccceEE-eeeeeeee
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIV-ASPAINIT 88 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~v~~~~ 88 (290)
..+++|||||++|+.+|..|++ |.+|+++++.+.+..... +.... ...+.+ .++.++ ...+..++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~-------~~~~~----~~~~~l~~~GI~i~~~~~V~~i~ 225 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREE-------PSVAA----LAKQYMEEDGITFLLNAHTTEVK 225 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCC-------HHHHH----HHHHHHHHcCCEEEcCCEEEEEE
Confidence 4689999999999999999976 999999999876431110 00000 011111 134443 34556665
Q ss_pred cc--e-EEecCceEEeccEEEEccCCCCCCCC
Q 022896 89 EN--E-VLTAEGRRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 89 ~~--~-v~~~~~~~~~~~~vi~a~G~~~~~p~ 117 (290)
.+ . +...++.++.+|.+++|+|..|+.+.
T Consensus 226 ~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~ 257 (438)
T PRK07251 226 NDGDQVLVVTEDETYRFDALLYATGRKPNTEP 257 (438)
T ss_pred ecCCEEEEEECCeEEEcCEEEEeeCCCCCccc
Confidence 33 2 23345678999999999999987654
No 268
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=2.9e-05 Score=63.44 Aligned_cols=98 Identities=21% Similarity=0.312 Sum_probs=72.7
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCe-EEEEecCcc---------------ccc-cCChhHHHHHHHHHHhCCcEEEeC
Q 022896 137 RSILIVGGGPTGVELAGEIAVDFPEKK-VTLVHKGSR---------------LLE-FIGPKAGDKTRDWLISKKVDVKLG 199 (290)
Q Consensus 137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~-v~~~~~~~~---------------~~~-~~~~~~~~~~~~~~~~~gi~~~~~ 199 (290)
.+++|||+|+.|+.+|.++.. .+.+ +.++..... +.. ...+++.+.+++..+..++++..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r--~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~- 80 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAAR--AGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE- 80 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHH--cCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-
Confidence 479999999999999999885 3555 444443211 111 13457888888888889999998
Q ss_pred ceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCch
Q 022896 200 ERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD 238 (290)
Q Consensus 200 ~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~ 238 (290)
..+..++..++.+.+.+.+|+ ++++.||+|+|..+..+
T Consensus 81 ~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 81 DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKL 118 (305)
T ss_pred EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCC
Confidence 667666665557888888886 99999999999877554
No 269
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.18 E-value=2.6e-05 Score=69.63 Aligned_cols=99 Identities=17% Similarity=0.171 Sum_probs=74.0
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc------------c----CChhHHHHHHHHHHhCCcEEEeCc
Q 022896 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE------------F----IGPKAGDKTRDWLISKKVDVKLGE 200 (290)
Q Consensus 137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~------------~----~~~~~~~~~~~~~~~~gi~~~~~~ 200 (290)
.+++|||+|+.|+.+|..+.. .+.+|+++++.. +.. . ....+...+.+.+++.|++++ ++
T Consensus 5 yDVvIIGgGpAGL~AA~~lar--~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~ 80 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGR--AKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QA 80 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-cc
Confidence 579999999999999999986 488999998753 211 0 112456677778888899986 66
Q ss_pred eEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhh
Q 022896 201 RVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL 240 (290)
Q Consensus 201 ~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l 240 (290)
.++.+..+++...+.+.++ .+.++.+|+|||.+|..+-+
T Consensus 81 ~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~i 119 (555)
T TIGR03143 81 EVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGF 119 (555)
T ss_pred EEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCC
Confidence 7877776555566666665 68999999999998865433
No 270
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.17 E-value=1.8e-06 Score=77.38 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=32.0
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
..+.+|+|||||++||++|..|++ |++|+|||+..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 346999999999999999999986 99999999975
No 271
>PLN02676 polyamine oxidase
Probab=98.17 E-value=2.3e-06 Score=74.98 Aligned_cols=40 Identities=23% Similarity=0.138 Sum_probs=36.6
Q ss_pred cEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCC
Q 022896 194 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 233 (290)
Q Consensus 194 i~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 233 (290)
.+++++++|++|+.+++++.|.+.+|+++.+|.||++.+.
T Consensus 245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl 284 (487)
T PLN02676 245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSL 284 (487)
T ss_pred CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccCh
Confidence 5799999999999988889999999989999999999874
No 272
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.17 E-value=2.1e-06 Score=68.39 Aligned_cols=40 Identities=13% Similarity=0.256 Sum_probs=36.4
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchh
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWA 52 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~ 52 (290)
++|++|||||.+|+.+|..|++ |.+|+|+||++..|++.-
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaY 41 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAY 41 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccc
Confidence 4799999999999999998876 999999999999997754
No 273
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.16 E-value=7.9e-06 Score=71.50 Aligned_cols=96 Identities=19% Similarity=0.233 Sum_probs=61.0
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN 90 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 90 (290)
..+++|||||++|+.+|..|++ |.+|+++|+.+.+.... ...........+.+ .+++++ ...+..++..
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~-------~~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~ 240 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGE-------DAEVSKVVAKALKK--KGVKILTNTKVTAVEKN 240 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCC-------CHHHHHHHHHHHHH--cCCEEEeCCEEEEEEEe
Confidence 4789999999999999999976 99999999987643211 01110000111111 133443 3355555432
Q ss_pred ----eEEecCc--eEEeccEEEEccCCCCCCCC
Q 022896 91 ----EVLTAEG--RRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 91 ----~v~~~~~--~~~~~~~vi~a~G~~~~~p~ 117 (290)
.+...++ .++.+|.+++|+|..|+.+.
T Consensus 241 ~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~ 273 (461)
T TIGR01350 241 DDQVVYENKGGETETLTGEKVLVAVGRKPNTEG 273 (461)
T ss_pred CCEEEEEEeCCcEEEEEeCEEEEecCCcccCCC
Confidence 2344455 47999999999999988763
No 274
>PRK07121 hypothetical protein; Validated
Probab=98.16 E-value=2.2e-06 Score=75.50 Aligned_cols=37 Identities=27% Similarity=0.282 Sum_probs=33.5
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE 48 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~ 48 (290)
..+||||||+|.+|++||+++++ |.+|+|+||....+
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~g 56 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAG 56 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 46999999999999999999986 99999999988644
No 275
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.16 E-value=2.1e-06 Score=74.14 Aligned_cols=35 Identities=37% Similarity=0.424 Sum_probs=30.2
Q ss_pred cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCccc
Q 022896 15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI 49 (290)
Q Consensus 15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~ 49 (290)
||||||+|.|||+||++|++ |.+|+|+||....++
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 89999999999999999986 999999999997554
No 276
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.15 E-value=1.1e-05 Score=70.10 Aligned_cols=92 Identities=12% Similarity=0.117 Sum_probs=66.7
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC----------ChhHHHHHHHHHHhCCcEEEeCceEee
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI----------GPKAGDKTRDWLISKKVDVKLGERVNL 204 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~gi~~~~~~~v~~ 204 (290)
.+++|+|||+|+.|+.+|..|..+..+.+|+++++.+.+.... .......+.+.++..+++++.+..+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg- 103 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG- 103 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC-
Confidence 4689999999999999999998644689999999988654211 11334456666778899999887661
Q ss_pred cccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 205 DSVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 205 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
..+...+- ...+|.||+|+|.++
T Consensus 104 -------~dvtl~~L-~~~yDaVIlAtGa~~ 126 (491)
T PLN02852 104 -------RDVSLSEL-RDLYHVVVLAYGAES 126 (491)
T ss_pred -------ccccHHHH-hhhCCEEEEecCCCC
Confidence 11222222 246999999999875
No 277
>PRK07846 mycothione reductase; Reviewed
Probab=98.14 E-value=9.5e-06 Score=70.59 Aligned_cols=95 Identities=15% Similarity=0.234 Sum_probs=62.2
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN 90 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 90 (290)
..+++|||||+.|+.+|..|++ |.+|+++++.+.+.... .++.. ..+..+. ..++.+. ...+..++..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~-------d~~~~-~~l~~l~--~~~v~i~~~~~v~~i~~~ 235 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHL-------DDDIS-ERFTELA--SKRWDVRLGRNVVGVSQD 235 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccccc-------CHHHH-HHHHHHH--hcCeEEEeCCEEEEEEEc
Confidence 4789999999999999999976 99999999987543110 11110 0011111 0123332 4455555432
Q ss_pred ----eEEecCceEEeccEEEEccCCCCCCCC
Q 022896 91 ----EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 91 ----~v~~~~~~~~~~~~vi~a~G~~~~~p~ 117 (290)
.+.+.++.++.+|.+++|+|.+|+.+.
T Consensus 236 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 236 GSGVTLRLDDGSTVEADVLLVATGRVPNGDL 266 (451)
T ss_pred CCEEEEEECCCcEeecCEEEEEECCccCccc
Confidence 355567778999999999999987654
No 278
>PLN02529 lysine-specific histone demethylase 1
Probab=98.14 E-value=2.4e-06 Score=77.54 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=37.7
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhh
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWAS 53 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~ 53 (290)
...+||+|||||++||+||+.|++ |++|+|+|+++.+|+....
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t 201 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYT 201 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceee
Confidence 346899999999999999999976 9999999999988876443
No 279
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.13 E-value=7.2e-06 Score=71.01 Aligned_cols=95 Identities=23% Similarity=0.248 Sum_probs=61.1
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN 90 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 90 (290)
..+++|||||++|+.+|..|++ |.+|+++++.+.+.... ............+.+ .+++++ ...+..++.+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~------~~~~~~~~~~~~l~~--~gV~v~~~~~v~~i~~~ 208 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKL------FDEEMNQIVEEELKK--HEINLRLNEEVDSIEGE 208 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccc------cCHHHHHHHHHHHHH--cCCEEEeCCEEEEEecC
Confidence 4789999999999999999976 89999999987642110 000000000001111 134443 4456666544
Q ss_pred e--EEecCceEEeccEEEEccCCCCCC
Q 022896 91 E--VLTAEGRRVVYDYLVIATGHKDPV 115 (290)
Q Consensus 91 ~--v~~~~~~~~~~~~vi~a~G~~~~~ 115 (290)
. +.+.++.++.+|.+++|+|..|..
T Consensus 209 ~~~v~~~~g~~i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 209 ERVKVFTSGGVYQADMVILATGIKPNS 235 (427)
T ss_pred CCEEEEcCCCEEEeCEEEECCCccCCH
Confidence 2 355677889999999999999764
No 280
>PRK09897 hypothetical protein; Provisional
Probab=98.12 E-value=4.1e-05 Score=67.40 Aligned_cols=99 Identities=18% Similarity=0.110 Sum_probs=69.2
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc----------------------------------------
Q 022896 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------------------------------------- 176 (290)
Q Consensus 137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------------------------------------- 176 (290)
++|+|||+|++|+-++..|.......+|++++++..+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 5899999999999999999764344578888875443211
Q ss_pred --------------CCh---------hHHHHHHHHHHhCC--cEEEeCceEeecccCCCceeEEcCC-CcEEeccEEEEc
Q 022896 177 --------------IGP---------KAGDKTRDWLISKK--VDVKLGERVNLDSVSEGSDTYLTST-GDTINADCHFLC 230 (290)
Q Consensus 177 --------------~~~---------~~~~~~~~~~~~~g--i~~~~~~~v~~i~~~~~~~~v~~~~-g~~~~~d~vv~a 230 (290)
+.+ +....+.+.+.+.| ++++.++.|+.++.+++++.+.+.+ |..+.+|.||+|
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLA 161 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIA 161 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEEC
Confidence 000 01111223334455 7888899999998877778887755 468999999999
Q ss_pred cCCCC
Q 022896 231 TGKPV 235 (290)
Q Consensus 231 ~G~~~ 235 (290)
+|..+
T Consensus 162 tGh~~ 166 (534)
T PRK09897 162 TGHVW 166 (534)
T ss_pred CCCCC
Confidence 99754
No 281
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.12 E-value=1e-05 Score=70.82 Aligned_cols=96 Identities=22% Similarity=0.302 Sum_probs=61.1
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN 90 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 90 (290)
..+++|||||++|+.+|..|++ |.+|+++++.+.+.... .+.........+.+ .++.++ ...+..++..
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------~~~~~~~l~~~l~~--~gV~i~~~~~V~~i~~~ 242 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGE-------DKEISKLAERALKK--RGIKIKTGAKAKKVEQT 242 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcC-------CHHHHHHHHHHHHH--cCCEEEeCCEEEEEEEe
Confidence 4789999999999999999975 99999999987643211 11111100001111 134443 3356666543
Q ss_pred ----eEEecCc---eEEeccEEEEccCCCCCCCC
Q 022896 91 ----EVLTAEG---RRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 91 ----~v~~~~~---~~~~~~~vi~a~G~~~~~p~ 117 (290)
.+.+.++ .++.+|.+++|+|..|+...
T Consensus 243 ~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 243 DDGVTVTLEDGGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred CCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence 2344444 67899999999999987653
No 282
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.12 E-value=2.1e-05 Score=66.29 Aligned_cols=99 Identities=17% Similarity=0.107 Sum_probs=67.8
Q ss_pred hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEee
Q 022896 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNL 204 (290)
Q Consensus 134 ~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~ 204 (290)
..+++++|||+|+.|+++|..+.. .+.+++++++.+.+... ...+......+.+.+.|++++.++.+..
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~ 93 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLAC--LGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCC 93 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEee
Confidence 357899999999999999999986 48899999988765421 1223333445567777999999998865
Q ss_pred ccc----CCCceeEEc--CCCcEEeccEEEEccCCC
Q 022896 205 DSV----SEGSDTYLT--STGDTINADCHFLCTGKP 234 (290)
Q Consensus 205 i~~----~~~~~~v~~--~~g~~~~~d~vv~a~G~~ 234 (290)
+.. +.+...... .++..+.+|.+|+|+|.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 94 GEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW 129 (352)
T ss_pred ccccccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence 432 111111111 112247899999999984
No 283
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.12 E-value=2.9e-06 Score=76.67 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=32.3
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCC
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEY 46 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~ 46 (290)
..++||+||||||+||++|..|++ |.+|+|||+.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 347899999999999999999975 899999999864
No 284
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.11 E-value=3.1e-06 Score=77.27 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=37.9
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL 54 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~ 54 (290)
....+|+|||||++||++|++|.+ |++|+|+|++..+|+.....
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~ 280 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTM 280 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCccccc
Confidence 346899999999999999999975 99999999999888664433
No 285
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.09 E-value=3.1e-06 Score=74.00 Aligned_cols=62 Identities=13% Similarity=0.090 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCC--Cc----eeEEcCCC---cEEeccEEEEccCCCCCchhhc
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSE--GS----DTYLTSTG---DTINADCHFLCTGKPVGSDWLK 241 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~--~~----~~v~~~~g---~~~~~d~vv~a~G~~~~~~~l~ 241 (290)
.+.+.+.+.++++|.+++.++.|++++.++ ++ ..+...+| +++++|.||+|++......++.
T Consensus 220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~ 290 (474)
T TIGR02732 220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLP 290 (474)
T ss_pred hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCC
Confidence 466778889999999999999999998754 22 22234333 4689999999998654334443
No 286
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.09 E-value=4.3e-05 Score=64.05 Aligned_cols=93 Identities=29% Similarity=0.364 Sum_probs=66.9
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC-ccccc-----------------------------------------
Q 022896 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG-SRLLE----------------------------------------- 175 (290)
Q Consensus 138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~-~~~~~----------------------------------------- 175 (290)
+|+|||+|..|+++|..+++ .+.+|.++... +.+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr--~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN 78 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAAR--MGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLN 78 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccc
Confidence 58999999999999999997 59999988422 11100
Q ss_pred ------------cCC-hhHHHHHHHHHHh-CCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCC
Q 022896 176 ------------FIG-PKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGK 233 (290)
Q Consensus 176 ------------~~~-~~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~ 233 (290)
..+ ..+...+++.++. .+++++ ...|+++..+++. ..|.+.+|+.+.+|.||+|||.
T Consensus 79 ~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 79 RSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred ccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 011 1456667777777 689997 4578888776665 7788999999999999999998
No 287
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.08 E-value=1.8e-05 Score=69.11 Aligned_cols=89 Identities=18% Similarity=0.294 Sum_probs=67.4
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
.+++++|||+|+.|+.+|..|.. .+.+|+++++.+.+... ...++.....+.+++.|++++.++.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~--~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~- 215 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR--KGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR- 215 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC-
Confidence 46899999999999999999986 48899999987765321 2445666777888899999999987621
Q ss_pred ccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896 206 SVSEGSDTYLTSTGDTINADCHFLCTGKP 234 (290)
Q Consensus 206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 234 (290)
.+...+. .+.+|.||+|+|..
T Consensus 216 -------~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 -------DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred -------ccCHHHH-HhhCCEEEEccCCC
Confidence 1122222 37899999999985
No 288
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.08 E-value=4.9e-05 Score=64.83 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCC--ceeE----EcCCCc--EE---eccEEEEccCCCC
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG--SDTY----LTSTGD--TI---NADCHFLCTGKPV 235 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~--~~~v----~~~~g~--~~---~~d~vv~a~G~~~ 235 (290)
+.+...+.+.|+++||++.+++.|+.+..+.. ...+ ...+|+ ++ +-|.|++..|+..
T Consensus 207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence 36788899999999999999999999987533 2211 224553 33 3799999988754
No 289
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.07 E-value=5.1e-05 Score=66.06 Aligned_cols=97 Identities=22% Similarity=0.265 Sum_probs=66.6
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------------------------C----C-------
Q 022896 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------------------------I----G------- 178 (290)
Q Consensus 137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------------------------~----~------- 178 (290)
..++|||+|+.|+.+|..+++ .+.+|.++++. .+... + .
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (446)
T TIGR01424 3 YDLFVIGAGSGGVRAARLAAN--HGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWK 79 (446)
T ss_pred ccEEEECCCHHHHHHHHHHHh--CCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHH
Confidence 468999999999999999987 58999999863 22110 0 0
Q ss_pred ----------hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhh
Q 022896 179 ----------PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL 240 (290)
Q Consensus 179 ----------~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l 240 (290)
..+...+++.+++.|++++.+ .++.+ +.+.+.+. .+|+++.+|.+|+|||.+|..+-+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v--~~~~v~v~-~~g~~~~~d~lIiATGs~p~~p~i 147 (446)
T TIGR01424 80 KLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLV--GPNTVEVL-QDGTTYTAKKILIAVGGRPQKPNL 147 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEe--cCCEEEEe-cCCeEEEcCEEEEecCCcCCCCCC
Confidence 012334555677789999877 44333 33344443 456789999999999999865433
No 290
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.07 E-value=3.9e-06 Score=70.45 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=37.1
Q ss_pred CCCCcEEEEcCChHHHHHHHHhc-c-CCcEEEEcCCCCcccchhhh
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITWASL 54 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~-~-g~~v~vie~~~~~~~~~~~~ 54 (290)
....+|+|||||+|||+||.+|- . ..+++|+|..+..|+.....
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti 64 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTI 64 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeE
Confidence 34579999999999999999996 4 57899999999988765443
No 291
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.06 E-value=5.9e-05 Score=66.06 Aligned_cols=97 Identities=21% Similarity=0.231 Sum_probs=67.5
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------CCh-------------------------------
Q 022896 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------IGP------------------------------- 179 (290)
Q Consensus 137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~------~~~------------------------------- 179 (290)
.+++|||+|+.|+.+|..+.+ .+.+|.++++.+.+... .+.
T Consensus 6 yDvvVIGaGpaG~~aA~~la~--~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAK--LGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA 83 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHh--CCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence 579999999999999999987 48899999986443211 000
Q ss_pred h-----------HHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCc--EEeccEEEEccCCCCCch
Q 022896 180 K-----------AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD--TINADCHFLCTGKPVGSD 238 (290)
Q Consensus 180 ~-----------~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~ 238 (290)
+ +...+.+.+++.|++++.+... ..+.+.+.+...+|+ ++.+|.+|+|||..|..+
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~---~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p 152 (461)
T PRK05249 84 DLLARADHVINKQVEVRRGQYERNRVDLIQGRAR---FVDPHTVEVECPDGEVETLTADKIVIATGSRPYRP 152 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE---EecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence 0 0112334566789999877532 234455667666664 789999999999988643
No 292
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.06 E-value=4e-06 Score=74.10 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=31.8
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE 48 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~ 48 (290)
.+||||||+| +||+||+++++ |.+|+||||....+
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~G 42 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFG 42 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 6899999999 99999999976 99999999987644
No 293
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.05 E-value=3.8e-06 Score=69.01 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=44.3
Q ss_pred HHHHHHHHHhCCcEEEeCceEeecccC--CCc---eeEEcCCCc----EEeccEEEEccCCCCCchhhccccc
Q 022896 182 GDKTRDWLISKKVDVKLGERVNLDSVS--EGS---DTYLTSTGD----TINADCHFLCTGKPVGSDWLKDTIL 245 (290)
Q Consensus 182 ~~~~~~~~~~~gi~~~~~~~v~~i~~~--~~~---~~v~~~~g~----~~~~d~vv~a~G~~~~~~~l~~~~~ 245 (290)
...+...++..|+++++++.|+++..+ ++. +.+...++. .+.++.||+|.|.--.+.+|..+++
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 444556565669999999999999554 333 334444554 4678999999997656677777766
No 294
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.05 E-value=2e-05 Score=68.61 Aligned_cols=91 Identities=19% Similarity=0.163 Sum_probs=66.7
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------cCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
.+++++|||+|+.|+.+|..|.. .+.+|+++++.+.+.. .++.++.....+.+++.|++++.++.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~-- 207 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAK--AGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG-- 207 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC--
Confidence 46799999999999999999986 4889999998765421 1344566666677888999999987551
Q ss_pred ccCCCceeEEcCCCcEEeccEEEEccCC-CCC
Q 022896 206 SVSEGSDTYLTSTGDTINADCHFLCTGK-PVG 236 (290)
Q Consensus 206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~-~~~ 236 (290)
..+.+.+. ...+|.||+|+|. .|.
T Consensus 208 ------~~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 208 ------KTATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred ------CcCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 11222222 3569999999997 454
No 295
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.05 E-value=5.4e-06 Score=73.73 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=33.4
Q ss_pred CCCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCCcc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFE 48 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~~~ 48 (290)
..+||+|||+|.|||+||.++++|.+|+|+||....+
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~~G~~V~lieK~~~~g 44 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLPSHLRVGLITKDTLKT 44 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhhcCCCEEEEEccCCCC
Confidence 3689999999999999999998899999999987644
No 296
>PRK12831 putative oxidoreductase; Provisional
Probab=98.05 E-value=2.5e-05 Score=68.14 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=66.4
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CCh-hHHHHHHHHHHhCCcEEEeCceEee
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGP-KAGDKTRDWLISKKVDVKLGERVNL 204 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~gi~~~~~~~v~~ 204 (290)
.+++++|||+|+.|+.+|..+.. .+.+|+++++.+.+... +.. .+.....+.+++.|++++.++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~ 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAK--MGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC
Confidence 57899999999999999999997 48899999976543211 122 2555566788889999999986621
Q ss_pred cccCCCceeEEcCCC-cEEeccEEEEccCC-CCC
Q 022896 205 DSVSEGSDTYLTSTG-DTINADCHFLCTGK-PVG 236 (290)
Q Consensus 205 i~~~~~~~~v~~~~g-~~~~~d~vv~a~G~-~~~ 236 (290)
.+...+. +.+.+|.||+|+|. .|.
T Consensus 217 --------~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 217 --------TVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred --------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 1122222 24579999999998 454
No 297
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.04 E-value=6.1e-06 Score=53.35 Aligned_cols=34 Identities=44% Similarity=0.638 Sum_probs=31.2
Q ss_pred cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896 15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE 48 (290)
Q Consensus 15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~ 48 (290)
+++|||||+.|+-+|..|++ |.+|+|+++++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999976 99999999998765
No 298
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.04 E-value=5.1e-06 Score=74.24 Aligned_cols=37 Identities=30% Similarity=0.347 Sum_probs=32.8
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE 48 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~ 48 (290)
..+||+|||+|.|||+||..+++ |.+|+|+||....+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~ 41 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTR 41 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 46899999999999999999976 99999999986533
No 299
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.04 E-value=5.1e-06 Score=74.09 Aligned_cols=34 Identities=32% Similarity=0.531 Sum_probs=31.8
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
.++||||||+|.+||+||.++++ |.+|+||||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 36899999999999999999976 99999999998
No 300
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.04 E-value=2.1e-05 Score=68.45 Aligned_cols=95 Identities=16% Similarity=0.240 Sum_probs=61.2
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN 90 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 90 (290)
..+++|||||+.|+.+|..|++ |.+|++|++.+.+.... .++... .+..+.. .++.+. ...+..+..+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~-------d~~~~~-~l~~~~~--~gI~i~~~~~V~~i~~~ 238 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHL-------DEDISD-RFTEIAK--KKWDIRLGRNVTAVEQD 238 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccccc-------CHHHHH-HHHHHHh--cCCEEEeCCEEEEEEEc
Confidence 4789999999999999999976 99999999987642110 111100 0111110 123332 3445555432
Q ss_pred ----eEEecCceEEeccEEEEccCCCCCCCC
Q 022896 91 ----EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 91 ----~v~~~~~~~~~~~~vi~a~G~~~~~p~ 117 (290)
.+.+.++.++.+|.+++|+|.+|+...
T Consensus 239 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 239 GDGVTLTLDDGSTVTADVLLVATGRVPNGDL 269 (452)
T ss_pred CCeEEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence 345556778999999999999987654
No 301
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.01 E-value=3.1e-05 Score=65.24 Aligned_cols=100 Identities=23% Similarity=0.363 Sum_probs=76.2
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc----------cCChhHHHHHHHHHHhCCcEEEeCceEee
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE----------FIGPKAGDKTRDWLISKKVDVKLGERVNL 204 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~gi~~~~~~~v~~ 204 (290)
..+.++|+|+|+.+.-++..+....+...++++.+...+.. .....+.....++.+++||+++.++.|+.
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~ 152 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVK 152 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEE
Confidence 46889999999988888888877656667787775543211 11234555667789999999999999977
Q ss_pred cccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896 205 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 236 (290)
Q Consensus 205 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 236 (290)
++... .++.+.+|++++++.+++|||+.+.
T Consensus 153 ~D~~~--K~l~~~~Ge~~kys~LilATGs~~~ 182 (478)
T KOG1336|consen 153 ADLAS--KTLVLGNGETLKYSKLIIATGSSAK 182 (478)
T ss_pred eeccc--cEEEeCCCceeecceEEEeecCccc
Confidence 76644 5677889999999999999999543
No 302
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.00 E-value=2.8e-05 Score=73.81 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=67.4
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
.+++|+|||+|+.|+.+|..|.. .+.+|+++++.+.+... ...++.....+.+++.|++++.++.+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~--~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg-- 504 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK--YGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG-- 504 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC--
Confidence 35799999999999999999996 48999999987655322 244677777888999999999987541
Q ss_pred ccCCCceeEEcCCC-cEEeccEEEEccCCC-CC
Q 022896 206 SVSEGSDTYLTSTG-DTINADCHFLCTGKP-VG 236 (290)
Q Consensus 206 ~~~~~~~~v~~~~g-~~~~~d~vv~a~G~~-~~ 236 (290)
..+++ .+- +...+|.||+|+|.+ |.
T Consensus 505 ----~~~~~--~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 505 ----KTFTV--PQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred ----CccCH--HHHhhccCCCEEEEecCCCCCC
Confidence 11111 111 124689999999985 44
No 303
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.00 E-value=3.3e-05 Score=71.64 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=66.9
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
.+++|+|||+|+.|+.+|..|.. .+.+|+++++.+.+... ++.++.....+.+++.|++++.++.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~-- 505 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAK--RGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG-- 505 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC--
Confidence 46899999999999999999986 58999999986543221 233455555677888999999987651
Q ss_pred ccCCCceeEEcCCCcEEeccEEEEccCCC-CC
Q 022896 206 SVSEGSDTYLTSTGDTINADCHFLCTGKP-VG 236 (290)
Q Consensus 206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~-~~ 236 (290)
. .+...+.....+|.||+|+|.+ |.
T Consensus 506 ----~--~v~~~~l~~~~ydavvlAtGa~~~~ 531 (752)
T PRK12778 506 ----K--TITIEELEEEGFKGIFIASGAGLPN 531 (752)
T ss_pred ----C--cCCHHHHhhcCCCEEEEeCCCCCCC
Confidence 1 1222333356799999999984 54
No 304
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.99 E-value=2.5e-05 Score=68.19 Aligned_cols=96 Identities=17% Similarity=0.263 Sum_probs=59.9
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN 90 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 90 (290)
..+++|||||++|+.+|..|.+ |.+|+++++.+.+.... .++........+.+ .+++++ ...+..++..
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~-------d~e~~~~l~~~L~~--~GI~i~~~~~V~~i~~~ 240 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGE-------DEDIAHILREKLEN--DGVKIFTGAALKGLNSY 240 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccc-------cHHHHHHHHHHHHH--CCCEEEECCEEEEEEEc
Confidence 4689999999999999999976 99999999987643211 01111111111111 134443 3345555543
Q ss_pred --eEEe-cCc--eEEeccEEEEccCCCCCCCC
Q 022896 91 --EVLT-AEG--RRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 91 --~v~~-~~~--~~~~~~~vi~a~G~~~~~p~ 117 (290)
.+.. .++ .++.+|.+++|+|..|+...
T Consensus 241 ~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~ 272 (458)
T PRK06912 241 KKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQ 272 (458)
T ss_pred CCEEEEEECCceEEEEeCEEEEecCCccCCCC
Confidence 2222 233 36899999999999988654
No 305
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.99 E-value=3.6e-05 Score=64.31 Aligned_cols=67 Identities=7% Similarity=-0.082 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCCCCc-hhhcccccc
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGS-DWLKDTILK 246 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~-~~l~~~~~~ 246 (290)
.+...+.+-+++.|.++.+...|.+|..+++. +.|.+.||+++.+..|+.-++.+--. .++....++
T Consensus 265 avs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~LP 333 (561)
T KOG4254|consen 265 AVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEALP 333 (561)
T ss_pred HHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCccCC
Confidence 67888899999999999999999999888866 88899999999998887776655322 555555443
No 306
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.99 E-value=6.5e-06 Score=72.31 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=35.6
Q ss_pred CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchh
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWA 52 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~ 52 (290)
+||+|||+||+|+++|++|++ |++|+|||++...++.|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 699999999999999999975 999999999998886664
No 307
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.99 E-value=7e-05 Score=65.58 Aligned_cols=96 Identities=28% Similarity=0.322 Sum_probs=68.1
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----------------------------CC---------
Q 022896 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-----------------------------IG--------- 178 (290)
Q Consensus 137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~-----------------------------~~--------- 178 (290)
++++|||+|+.|+.+|..+.+ .+.+|.++++.+ +... ..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~--~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQ--LGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV 78 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence 579999999999999999987 488999998754 1100 00
Q ss_pred -h------------hHHHHHHHHHHhCCcEEEeCceEeecc--cCCCceeEEcCCCc--EEeccEEEEccCCCCC
Q 022896 179 -P------------KAGDKTRDWLISKKVDVKLGERVNLDS--VSEGSDTYLTSTGD--TINADCHFLCTGKPVG 236 (290)
Q Consensus 179 -~------------~~~~~~~~~~~~~gi~~~~~~~v~~i~--~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~ 236 (290)
- .+...+.+.+++.|++++.+.-. .++ .+++.+.+.+.+|+ ++.+|.+|+|||..|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~-~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGR-LIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR 152 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE-EeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence 0 01123445667789999887543 222 45566777777775 7999999999999885
No 308
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.98 E-value=1.9e-05 Score=67.95 Aligned_cols=94 Identities=19% Similarity=0.338 Sum_probs=63.9
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceE-Eeeeeeeeecc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRI-VASPAINITEN 90 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~ 90 (290)
..+++|||+|+.|+.+|.+|++ |++|+++|+.+..++.... +.+... +....+.. ++++ ....+..++..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~------~~~~~~-~~~~l~~~-gi~~~~~~~~~~i~~~ 207 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD------PEVAEE-LAELLEKY-GVELLLGTKVVGVEGK 207 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh------HHHHHH-HHHHHHHC-CcEEEeCCceEEEEcc
Confidence 4799999999999999999975 9999999999987754321 111111 11111111 1333 34455555543
Q ss_pred e-------EEecCceEEeccEEEEccCCCCC
Q 022896 91 E-------VLTAEGRRVVYDYLVIATGHKDP 114 (290)
Q Consensus 91 ~-------v~~~~~~~~~~~~vi~a~G~~~~ 114 (290)
. +...++..+.+|.+++++|.+|+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 208 GNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred cCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 1 46677788999999999999985
No 309
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.98 E-value=8.1e-06 Score=72.07 Aligned_cols=36 Identities=33% Similarity=0.451 Sum_probs=32.8
Q ss_pred CCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCCcc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFE 48 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~~~ 48 (290)
.+||+|||+|.|||+||.++++|.+|+|+||....+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~g~~V~lveK~~~~~ 38 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCHEYNVIIITKKTKRN 38 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhcCCCEEEEeccCCCC
Confidence 589999999999999999998899999999988543
No 310
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.98 E-value=7.3e-06 Score=66.99 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=32.0
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
....||+|||||.+|.+.|+.|++ |.+|+||||+=
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 346999999999999999999987 99999999975
No 311
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.98 E-value=4.8e-05 Score=57.64 Aligned_cols=138 Identities=20% Similarity=0.227 Sum_probs=89.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC--------------------------------------
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-------------------------------------- 177 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-------------------------------------- 177 (290)
.-.|+|+|+|++|+.+|.+|++ .+.+|.+++++-.+....
T Consensus 30 esDViIVGaGPsGLtAAyyLAk--~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~d 107 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAK--AGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVAD 107 (262)
T ss_pred hccEEEECcCcchHHHHHHHHh--CCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEec
Confidence 4689999999999999999997 489999999776543211
Q ss_pred ChhHHHHHHHHHHhCCcEEEeCceEeecccCCC-c-eeEEc------CCC-----cEEeccEEEEccCCCCCc-hhhccc
Q 022896 178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-S-DTYLT------STG-----DTINADCHFLCTGKPVGS-DWLKDT 243 (290)
Q Consensus 178 ~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~-~-~~v~~------~~g-----~~~~~d~vv~a~G~~~~~-~~l~~~ 243 (290)
...+...+....-+.|.+++..+.++++...++ . ..+.. ..+ -.++++.||-+||+.... .++...
T Consensus 108 s~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr 187 (262)
T COG1635 108 SAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKR 187 (262)
T ss_pred HHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHh
Confidence 224444555666677899999999998877666 2 22221 122 368899999999987532 333222
Q ss_pred c--cccc-------cCCCC-cEEecCCccccCCCCeEEeccccC
Q 022896 244 I--LKDS-------LDTHG-MLMVDENLRVKGQKNIFAIGDITD 277 (290)
Q Consensus 244 ~--~~~~-------~~~~g-~~~v~~~~~~~~~~~vfa~Gd~~~ 277 (290)
+ +..+ +.+.+ .+.|+.+.+ -+||+|++|=+++
T Consensus 188 ~~~l~~~~~Ge~~mw~e~~E~lvV~~T~e--V~pgL~vaGMa~~ 229 (262)
T COG1635 188 IPELGIEVPGEKSMWAERGEDLVVENTGE--VYPGLYVAGMAVN 229 (262)
T ss_pred ccccccccCCCcchhhhHHHHHHHhcccc--ccCCeEeehhhHH
Confidence 1 1111 11111 233333444 3899999997754
No 312
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.98 E-value=2.6e-05 Score=68.25 Aligned_cols=96 Identities=19% Similarity=0.242 Sum_probs=59.7
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN 90 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 90 (290)
..+++|||+|++|+.+|..|++ |.+|+++++.+.+.... .+.........+. ..+++++ ...+..+..+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------d~~~~~~l~~~l~--~~gV~i~~~~~V~~i~~~ 236 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPRE-------EPEISAAVEEALA--EEGIEVVTSAQVKAVSVR 236 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCcc-------CHHHHHHHHHHHH--HcCCEEEcCcEEEEEEEc
Confidence 4789999999999999999976 99999999987543211 1111110001111 1134443 2345555432
Q ss_pred ----eEEec---CceEEeccEEEEccCCCCCCCC
Q 022896 91 ----EVLTA---EGRRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 91 ----~v~~~---~~~~~~~~~vi~a~G~~~~~p~ 117 (290)
.+.+. ++.++.+|.+++|+|..|+...
T Consensus 237 ~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 237 GGGKIITVEKPGGQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred CCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCC
Confidence 23322 2357999999999999987663
No 313
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.98 E-value=7.4e-06 Score=73.51 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=31.5
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF 47 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~ 47 (290)
+.||||||+|.|||+||.++++ |.+|+|+||....
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~ 38 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK 38 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 4699999999999999999976 9999999987753
No 314
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.97 E-value=2.9e-05 Score=68.17 Aligned_cols=96 Identities=21% Similarity=0.266 Sum_probs=60.4
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN 90 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 90 (290)
..+++|||+|+.|+.+|..|++ |.+|+++++.+.+.... .+.........+.. .++.+. ...+..++..
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------d~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~ 253 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAA-------DEQVAKEAAKAFTK--QGLDIHLGVKIGEIKTG 253 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcC-------CHHHHHHHHHHHHH--cCcEEEeCcEEEEEEEc
Confidence 4799999999999999999976 99999999987543110 11111111111111 134443 3355555532
Q ss_pred ----eEEecC--c--eEEeccEEEEccCCCCCCCC
Q 022896 91 ----EVLTAE--G--RRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 91 ----~v~~~~--~--~~~~~~~vi~a~G~~~~~p~ 117 (290)
.+...+ + ..+.+|.+++|+|..|+.+.
T Consensus 254 ~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 254 GKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred CCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCC
Confidence 233333 2 46899999999999988764
No 315
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.97 E-value=8.3e-06 Score=73.09 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=34.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT 50 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~ 50 (290)
.+.||||||+|.+||+||+.+++ |.+|+|+||....++.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 36899999999999999999975 9999999999876654
No 316
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.95 E-value=8.3e-06 Score=67.41 Aligned_cols=35 Identities=31% Similarity=0.580 Sum_probs=31.8
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF 47 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~ 47 (290)
+.+|+|||||++|+++|..|.+ |.+|+|+|+.+.+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 4789999999999999999976 9999999997754
No 317
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.95 E-value=2.8e-05 Score=67.70 Aligned_cols=96 Identities=18% Similarity=0.196 Sum_probs=60.1
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN 90 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 90 (290)
..+++|||||..|+-+|..|++ |.+|+++++.+.+.... .+.........+.. .++.+. ...+..+...
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~-------d~~~~~~~~~~l~~--~gI~i~~~~~v~~i~~~ 236 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSF-------DSMISETITEEYEK--EGINVHKLSKPVKVEKT 236 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCccc-------CHHHHHHHHHHHHH--cCCEEEcCCEEEEEEEe
Confidence 4789999999999999999976 99999999987543111 11111110011110 123333 2344444321
Q ss_pred -----eEEecCc-eEEeccEEEEccCCCCCCCC
Q 022896 91 -----EVLTAEG-RRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 91 -----~v~~~~~-~~~~~~~vi~a~G~~~~~p~ 117 (290)
.+.+.++ ..+.+|.+++|+|..|+...
T Consensus 237 ~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~ 269 (450)
T TIGR01421 237 VEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKG 269 (450)
T ss_pred CCceEEEEECCCcEEEEcCEEEEeeCCCcCccc
Confidence 2445556 57899999999999987653
No 318
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.94 E-value=0.00021 Score=61.40 Aligned_cols=140 Identities=14% Similarity=0.189 Sum_probs=90.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC--------------------------------------
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-------------------------------------- 177 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-------------------------------------- 177 (290)
.++++|||+|++|+-.|..|.. .+.++++++|.+.+....
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~--~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLR--EGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCceEEECcchHHHHHHHHHHH--CCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 6899999999999999999986 488888888766542100
Q ss_pred ----C-hhHHHHHHHHHHhCCc--EEEeCceEeecccCC-CceeEEcCCC----cEEeccEEEEccCCC--CCchhhccc
Q 022896 178 ----G-PKAGDKTRDWLISKKV--DVKLGERVNLDSVSE-GSDTYLTSTG----DTINADCHFLCTGKP--VGSDWLKDT 243 (290)
Q Consensus 178 ----~-~~~~~~~~~~~~~~gi--~~~~~~~v~~i~~~~-~~~~v~~~~g----~~~~~d~vv~a~G~~--~~~~~l~~~ 243 (290)
. .++.+.+...++..++ .+..++++..++... +.+.|.+.++ ++.-+|.|++|+|.. |+.+.+...
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~ 163 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP 163 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence 1 1556667777777776 577788777777666 6777765444 366799999999987 444444332
Q ss_pred ccccccCCCCcEEecCCccc---cCCCCeEEeccccCccc
Q 022896 244 ILKDSLDTHGMLMVDENLRV---KGQKNIFAIGDITDIRV 280 (290)
Q Consensus 244 ~~~~~~~~~g~~~v~~~~~~---~~~~~vfa~Gd~~~~~~ 280 (290)
++ + .=.|.+.---.++. -..+.|.++|--.++.+
T Consensus 164 ~~--~-~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~D 200 (448)
T KOG1399|consen 164 GI--E-SFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMD 200 (448)
T ss_pred ch--h-hcCCcceehhhccCcccccCceEEEECCCccHHH
Confidence 11 1 11233333222322 13467888876555443
No 319
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.94 E-value=1e-05 Score=67.05 Aligned_cols=42 Identities=26% Similarity=0.303 Sum_probs=35.3
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCCCcccchhh
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWAS 53 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~~~~~~~~~ 53 (290)
+.++|+|+|||++||++|++|++ + ..++++|+.+..|+....
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 46899999999999999999975 4 556779999999866544
No 320
>PRK12839 hypothetical protein; Provisional
Probab=97.94 E-value=1.1e-05 Score=72.12 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=35.1
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccc
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT 50 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~ 50 (290)
..++||+|||+|.+|+++|++|++ |.+|+|||++...++.
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 46 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA 46 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 347999999999999999999975 9999999999876644
No 321
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.94 E-value=1e-05 Score=73.24 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=31.4
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
..+||+|||||.|||+||.++++ |.+|+|+|+...
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~ 69 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDS 69 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 35899999999999999999976 999999998654
No 322
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.94 E-value=1e-05 Score=73.44 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=32.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE 48 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~ 48 (290)
...||+|||||.|||+||..+++ |.+|+|+|+....+
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 46899999999999999999975 99999999987543
No 323
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.93 E-value=1e-05 Score=72.13 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=33.4
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCccc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI 49 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~ 49 (290)
++||+|||+|.+|+++|++|++ |.+|+|||+....++
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG 43 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGG 43 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 6899999999999999999986 999999999876543
No 324
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.93 E-value=0.00011 Score=63.86 Aligned_cols=99 Identities=20% Similarity=0.203 Sum_probs=65.3
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc-cccc------CCh-----------hHH----------HHH---
Q 022896 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR-LLEF------IGP-----------KAG----------DKT--- 185 (290)
Q Consensus 137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~-~~~~------~~~-----------~~~----------~~~--- 185 (290)
.+++|||+|+.|+.+|..+.. .+.+|.++++.+. +... .+. .+. ..+
T Consensus 4 yDvvVIGgGpaGl~aA~~la~--~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAK--AGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNK 81 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHH--CCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999987 4889999998643 2110 000 110 111
Q ss_pred -HHHHHh-CCcEEEeCceEeecccCCCceeEEcCCCc-EEeccEEEEccCCCCCchhh
Q 022896 186 -RDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGD-TINADCHFLCTGKPVGSDWL 240 (290)
Q Consensus 186 -~~~~~~-~gi~~~~~~~v~~i~~~~~~~~v~~~~g~-~~~~d~vv~a~G~~~~~~~l 240 (290)
.+.+.+ .|++++.+. ++. .+.+.+.+.+.+|. ++.+|.+|+|||..|..+-+
T Consensus 82 ~~~~~~~~~gv~~~~g~-~~~--i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i 136 (441)
T PRK08010 82 NFHNLADMPNIDVIDGQ-AEF--INNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPI 136 (441)
T ss_pred HHHHHhhcCCcEEEEEE-EEE--ecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCC
Confidence 112223 389988764 322 34455777777775 69999999999998865433
No 325
>PRK14694 putative mercuric reductase; Provisional
Probab=97.93 E-value=5.2e-05 Score=66.45 Aligned_cols=94 Identities=18% Similarity=0.260 Sum_probs=58.6
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEEe-eeeeeeecc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITEN 90 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~ 90 (290)
..+++|||+|+.|+.+|..|++ |.+|+++++...+.. ..+.........+.+ .+++++. ..+..++.+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~--------~~~~~~~~l~~~l~~--~GI~v~~~~~v~~i~~~ 247 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ--------EDPAVGEAIEAAFRR--EGIEVLKQTQASEVDYN 247 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC--------CCHHHHHHHHHHHHh--CCCEEEeCCEEEEEEEc
Confidence 4689999999999999999976 999999997543321 011111111111111 1344443 355555432
Q ss_pred ----eEEecCceEEeccEEEEccCCCCCCCC
Q 022896 91 ----EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 91 ----~v~~~~~~~~~~~~vi~a~G~~~~~p~ 117 (290)
.+.+ ++.++.+|.+++|+|..|+...
T Consensus 248 ~~~~~v~~-~~~~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 248 GREFILET-NAGTLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred CCEEEEEE-CCCEEEeCEEEEccCCCCCcCC
Confidence 1333 3346999999999999987654
No 326
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.92 E-value=0.00011 Score=64.41 Aligned_cols=95 Identities=20% Similarity=0.156 Sum_probs=65.8
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc------CCh-------------------------------
Q 022896 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF------IGP------------------------------- 179 (290)
Q Consensus 137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~------~~~------------------------------- 179 (290)
..++|||+|+.|+.+|..++. .+.+|.++++.+.+... .+.
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAAD--LGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 579999999999999999986 48999999976443210 000
Q ss_pred hH-----------HHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC--cEEeccEEEEccCCCCC
Q 022896 180 KA-----------GDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG--DTINADCHFLCTGKPVG 236 (290)
Q Consensus 180 ~~-----------~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~ 236 (290)
.+ ...+...+++.||+++.+.-. ..+++.+.+...+| +++.+|.+|+|||.+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~---~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~ 149 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGK---FTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPI 149 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE---EccCCEEEEecCCCceEEEEcCEEEEeCCCCCC
Confidence 01 011123456679999977533 23455566766666 47899999999999885
No 327
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.92 E-value=1e-05 Score=68.77 Aligned_cols=35 Identities=37% Similarity=0.363 Sum_probs=31.1
Q ss_pred CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE 48 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~ 48 (290)
.||+|||||++|+.+|+.|++ |.+|+|||+++..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 479999999999999999976 99999999877543
No 328
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.92 E-value=5.5e-05 Score=66.11 Aligned_cols=91 Identities=16% Similarity=0.256 Sum_probs=67.3
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------cCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
.+++++|||+|+.|+.+|..+.. .+.+|+++++.+.+.. .+..++.....+.+++.|++++.++.+...
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc
Confidence 46899999999999999999986 4889999998765421 124455566678889999999999877211
Q ss_pred ccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896 206 SVSEGSDTYLTSTGDTINADCHFLCTGKPVG 236 (290)
Q Consensus 206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 236 (290)
+... +....+|.||+|+|..+.
T Consensus 218 --------~~~~-~~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 218 --------ISLD-DLLEDYDAVFLGVGTYRS 239 (467)
T ss_pred --------cCHH-HHHhcCCEEEEEeCCCCC
Confidence 1111 113479999999999763
No 329
>PRK06116 glutathione reductase; Validated
Probab=97.92 E-value=3.1e-05 Score=67.58 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=62.2
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN 90 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 90 (290)
..+++|||+|+.|+.+|..|.+ |.+|+++++++.+...+ .+.........+.+ .+++++ ...+..+..+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-------~~~~~~~l~~~L~~--~GV~i~~~~~V~~i~~~ 237 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGF-------DPDIRETLVEEMEK--KGIRLHTNAVPKAVEKN 237 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcccc-------CHHHHHHHHHHHHH--CCcEEECCCEEEEEEEc
Confidence 4789999999999999999976 99999999987542111 11110111111111 133443 3455555431
Q ss_pred -----eEEecCceEEeccEEEEccCCCCCCCC
Q 022896 91 -----EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 91 -----~v~~~~~~~~~~~~vi~a~G~~~~~p~ 117 (290)
.+.+.++..+.+|.+++|+|..|+...
T Consensus 238 ~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 238 ADGSLTLTLEDGETLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred CCceEEEEEcCCcEEEeCEEEEeeCCCcCCCC
Confidence 355567778999999999999987664
No 330
>PRK06370 mercuric reductase; Validated
Probab=97.92 E-value=4.6e-05 Score=66.69 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=60.2
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN 90 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 90 (290)
..+++|||||+.|+.+|..|++ |.+|+++++.+.+.... .+.........+.+ .+++++ ...+..++..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~-------~~~~~~~l~~~l~~--~GV~i~~~~~V~~i~~~ 241 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPRE-------DEDVAAAVREILER--EGIDVRLNAECIRVERD 241 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCccc-------CHHHHHHHHHHHHh--CCCEEEeCCEEEEEEEc
Confidence 4789999999999999999976 99999999987653211 00110000001111 134443 3455566532
Q ss_pred ----eEEe---cCceEEeccEEEEccCCCCCCC
Q 022896 91 ----EVLT---AEGRRVVYDYLVIATGHKDPVP 116 (290)
Q Consensus 91 ----~v~~---~~~~~~~~~~vi~a~G~~~~~p 116 (290)
.+.. .++..+.+|.+++|+|.+|+..
T Consensus 242 ~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 242 GDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred CCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 1222 2345799999999999998765
No 331
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.92 E-value=4.3e-05 Score=66.96 Aligned_cols=96 Identities=21% Similarity=0.265 Sum_probs=60.1
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN 90 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 90 (290)
..+++|||||+.|+.+|..|++ |.+|+|+++.+.+.... .+.........+.+ .+++++ ...+..+...
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~-------d~~~~~~l~~~l~~--~gV~i~~~~~v~~i~~~ 242 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNE-------DAEVSKEIAKQYKK--LGVKILTGTKVESIDDN 242 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCcc-------CHHHHHHHHHHHHH--CCCEEEECCEEEEEEEe
Confidence 4689999999999999999976 99999999877543211 01110110111111 134443 3455555432
Q ss_pred ----eEEec--Cc--eEEeccEEEEccCCCCCCCC
Q 022896 91 ----EVLTA--EG--RRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 91 ----~v~~~--~~--~~~~~~~vi~a~G~~~~~p~ 117 (290)
.+.+. ++ .++.+|.+++|+|.+|+...
T Consensus 243 ~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~ 277 (466)
T PRK07818 243 GSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEG 277 (466)
T ss_pred CCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCC
Confidence 13332 44 46899999999999988653
No 332
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.91 E-value=0.00021 Score=52.65 Aligned_cols=42 Identities=24% Similarity=0.307 Sum_probs=34.1
Q ss_pred CcEEE-eCceEeecccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896 193 KVDVK-LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP 234 (290)
Q Consensus 193 gi~~~-~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 234 (290)
++++. ...+|+.++..+++..+.+.+|..+.+|.||+|+|.+
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh~ 156 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGHQ 156 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCCC
Confidence 54443 3558888888888888889999999999999999963
No 333
>PLN02815 L-aspartate oxidase
Probab=97.89 E-value=1.7e-05 Score=71.01 Aligned_cols=37 Identities=32% Similarity=0.355 Sum_probs=32.7
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCccc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI 49 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~ 49 (290)
..+||+|||+|.|||+||.++++ | +|+|+||....++
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 45899999999999999999987 7 9999999886543
No 334
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.89 E-value=1.3e-05 Score=71.44 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=34.2
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccc
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT 50 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~ 50 (290)
..++||||||+| +|++||..+++ |.+|+|+||.+.+|+.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS 53 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence 347999999999 89999999976 9999999999876653
No 335
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.89 E-value=1.1e-05 Score=72.75 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=31.1
Q ss_pred CCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEY 46 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~ 46 (290)
.+||+|||||.|||+||.++++ |.+|+||||...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 5899999999999999999975 899999999864
No 336
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.89 E-value=6.8e-05 Score=65.86 Aligned_cols=89 Identities=19% Similarity=0.295 Sum_probs=66.4
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------cCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
.+++++|||+|+.|+.+|..|.. .+.+|+++++.+.+.. .++..+.....+.+++.|++++.++.+. .
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~--~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~-~ 218 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR--AGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIG-V 218 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeC-C
Confidence 45899999999999999999986 4789999998775421 1234556666678888999999998873 1
Q ss_pred ccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896 206 SVSEGSDTYLTSTGDTINADCHFLCTGKP 234 (290)
Q Consensus 206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 234 (290)
.... ++....+|.|++|+|.+
T Consensus 219 ~~~~--------~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 219 DISA--------DELKEQFDAVVLAGGAT 239 (485)
T ss_pred ccCH--------HHHHhhCCEEEEccCCC
Confidence 1110 11235799999999987
No 337
>PRK02106 choline dehydrogenase; Validated
Probab=97.88 E-value=1.4e-05 Score=71.52 Aligned_cols=61 Identities=8% Similarity=-0.085 Sum_probs=42.6
Q ss_pred HHHHHhCCcEEEeCceEeecccCCCc-eeEEc--CCCc--EEeccEEEEccCCCCCchhhcccccc
Q 022896 186 RDWLISKKVDVKLGERVNLDSVSEGS-DTYLT--STGD--TINADCHFLCTGKPVGSDWLKDTILK 246 (290)
Q Consensus 186 ~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~--~~g~--~~~~d~vv~a~G~~~~~~~l~~~~~~ 246 (290)
....++.|++++.++.|+++..+++. ..|+. .++. .+.++.||+|+|..-.+.+|..+++.
T Consensus 208 ~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG 273 (560)
T PRK02106 208 DPALKRPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIG 273 (560)
T ss_pred ccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCC
Confidence 33344678999999999999887543 33332 3332 46799999999987666777666653
No 338
>PLN02661 Putative thiazole synthesis
Probab=97.88 E-value=0.00025 Score=58.66 Aligned_cols=99 Identities=16% Similarity=0.125 Sum_probs=66.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------------------------CC----------
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------------------------IG---------- 178 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------------------------~~---------- 178 (290)
.-+++|||+|.+|+-+|..+.+ .++.+|.++++...+... ++
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~-~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~h 170 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSK-NPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKH 170 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHH-cCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecc
Confidence 4689999999999999999985 257899999876543110 00
Q ss_pred -hhHHHHHHHHH-HhCCcEEEeCceEeecccCCCc-eeEEc------CC--C------cEEeccEEEEccCCCC
Q 022896 179 -PKAGDKTRDWL-ISKKVDVKLGERVNLDSVSEGS-DTYLT------ST--G------DTINADCHFLCTGKPV 235 (290)
Q Consensus 179 -~~~~~~~~~~~-~~~gi~~~~~~~v~~i~~~~~~-~~v~~------~~--g------~~~~~d~vv~a~G~~~ 235 (290)
..+...+.+.+ ++.|++++.++.+.++..+++. ..+.. .+ + ..+.++.||+|||...
T Consensus 171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence 11122344433 4478999999999888776554 23321 11 1 2689999999999654
No 339
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.87 E-value=9.8e-05 Score=63.68 Aligned_cols=91 Identities=14% Similarity=0.181 Sum_probs=62.7
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC----C------hhHHHHHHHHHHhCCcEEEeCceEee
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI----G------PKAGDKTRDWLISKKVDVKLGERVNL 204 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~gi~~~~~~~v~~ 204 (290)
.+++|+|||+|++|+.+|..+..+ .+.+|+++++.+.+.... . ..+...+.+.+...+++++.+..+-.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~ 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC
Confidence 468999999999999999977643 488999999988764321 1 13445555566678888886555411
Q ss_pred cccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 205 DSVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 205 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
. +.. +.-...+|.||+|+|.++
T Consensus 117 ------D--vt~-eeL~~~YDAVIlAtGA~~ 138 (506)
T PTZ00188 117 ------D--LKM-EELRNHYNCVIFCCGASE 138 (506)
T ss_pred ------c--cCH-HHHHhcCCEEEEEcCCCC
Confidence 0 111 111237999999999875
No 340
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.87 E-value=1.5e-05 Score=70.80 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=32.3
Q ss_pred CCCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCCc
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYF 47 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~~ 47 (290)
..+||+|||+|.|||+||.++++..+|+|+||....
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~~~ 42 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPLS 42 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHCCCEEEEeccCCC
Confidence 358999999999999999999877899999998753
No 341
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=1.8e-05 Score=66.53 Aligned_cols=35 Identities=34% Similarity=0.372 Sum_probs=31.4
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
...|||+|||||-||..||...++ |.+.+++..+-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 457999999999999999999988 99999998664
No 342
>PLN02507 glutathione reductase
Probab=97.86 E-value=5.6e-05 Score=66.62 Aligned_cols=96 Identities=24% Similarity=0.254 Sum_probs=60.6
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN 90 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 90 (290)
..+++|||||+.|+-+|..|++ |.+|+|+++.+.+.... .+.........+.+ .+++++ ...+..+...
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~-------d~~~~~~l~~~l~~--~GI~i~~~~~V~~i~~~ 273 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGF-------DDEMRAVVARNLEG--RGINLHPRTNLTQLTKT 273 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCccc-------CHHHHHHHHHHHHh--CCCEEEeCCEEEEEEEe
Confidence 4689999999999999999976 99999999877432110 11110000001111 133333 2344454421
Q ss_pred ----eEEecCceEEeccEEEEccCCCCCCCC
Q 022896 91 ----EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 91 ----~v~~~~~~~~~~~~vi~a~G~~~~~p~ 117 (290)
.+.+.++.++.+|.+++|+|..|+...
T Consensus 274 ~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 274 EGGIKVITDHGEEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred CCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence 355567778999999999999987654
No 343
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.86 E-value=0.00069 Score=58.79 Aligned_cols=140 Identities=19% Similarity=0.239 Sum_probs=87.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCe-EEEEecCcccccc------------------------C--------ChhHH
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLEF------------------------I--------GPKAG 182 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~-v~~~~~~~~~~~~------------------------~--------~~~~~ 182 (290)
..+|+|||+|.+|+-+|..|.++ +.. +.++++.+.+... + .....
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~--g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~ 85 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQA--GVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK 85 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHc--CCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHH
Confidence 46899999999999999999985 444 8888877543210 0 11256
Q ss_pred HHHHHHHHhCCcE--EEeCceEeecccCCC--ceeEEcCCCcE--EeccEEEEccCCCCCchhhcc-cccccccCCCCcE
Q 022896 183 DKTRDWLISKKVD--VKLGERVNLDSVSEG--SDTYLTSTGDT--INADCHFLCTGKPVGSDWLKD-TILKDSLDTHGML 255 (290)
Q Consensus 183 ~~~~~~~~~~gi~--~~~~~~v~~i~~~~~--~~~v~~~~g~~--~~~d~vv~a~G~~~~~~~l~~-~~~~~~~~~~g~~ 255 (290)
..+.+.+++.++. +..++.|+.+..+++ ...|.+++|.. +.+|.||+|||+.. .+.+.. .+. .+..|.+
T Consensus 86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~-~P~iP~~~G~---~~f~g~~ 161 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLS-EPYIPDFAGL---DEFKGRI 161 (443)
T ss_pred HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCC-CCCCCCCCCc---cCCCceE
Confidence 6677778777653 455666666666554 47777777765 55999999999843 233222 121 1223443
Q ss_pred EecCCcc---ccCCCCeEEeccccCcccc
Q 022896 256 MVDENLR---VKGQKNIFAIGDITDIRVS 281 (290)
Q Consensus 256 ~v~~~~~---~~~~~~vfa~Gd~~~~~~~ 281 (290)
.--.++. ...-++|-++|--++.-+.
T Consensus 162 ~HS~~~~~~~~~~GKrV~VIG~GaSA~di 190 (443)
T COG2072 162 LHSADWPNPEDLRGKRVLVIGAGASAVDI 190 (443)
T ss_pred EchhcCCCccccCCCeEEEECCCccHHHH
Confidence 3332221 1246889999876655443
No 344
>PLN03000 amine oxidase
Probab=97.85 E-value=1.7e-05 Score=72.75 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=38.2
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhh
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL 54 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~ 54 (290)
...+|+|||||++||++|++|++ |++|+|+|+++..|+.....
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~ 226 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTK 226 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCccee
Confidence 46899999999999999999976 99999999999988776544
No 345
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.85 E-value=7.3e-05 Score=65.95 Aligned_cols=95 Identities=20% Similarity=0.269 Sum_probs=57.7
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEEe-eeeeeeec-
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITE- 89 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~- 89 (290)
..+++|||||+.|+.+|..|++ |.+|++++++..+. . + .+.........+.+ .+++++. ..+..+..
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~-~---~----d~~~~~~l~~~l~~--~GV~i~~~~~v~~v~~~ 251 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR-G---F----DRQCSEKVVEYMKE--QGTLFLEGVVPINIEKM 251 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc-c---C----CHHHHHHHHHHHHH--cCCEEEcCCeEEEEEEc
Confidence 3589999999999999999976 99999998743221 1 1 01111110111111 1233332 22333321
Q ss_pred --c-eEEecCceEEeccEEEEccCCCCCCCC
Q 022896 90 --N-EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 90 --~-~v~~~~~~~~~~~~vi~a~G~~~~~p~ 117 (290)
. .+.+.++.++.+|.+++|+|..|+...
T Consensus 252 ~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 252 DDKIKVLFSDGTTELFDTVLYATGRKPDIKG 282 (499)
T ss_pred CCeEEEEECCCCEEEcCEEEEeeCCCCCccc
Confidence 1 355566778899999999999987654
No 346
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.85 E-value=1.4e-05 Score=74.06 Aligned_cols=33 Identities=33% Similarity=0.576 Sum_probs=30.2
Q ss_pred CcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCC
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEY 46 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~ 46 (290)
++|+||||||+||++|..|++ |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 479999999999999999974 799999999885
No 347
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.85 E-value=0.0002 Score=62.95 Aligned_cols=97 Identities=27% Similarity=0.283 Sum_probs=66.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------------------------C-------Chh-
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------------------------I-------GPK- 180 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------------------------~-------~~~- 180 (290)
..+++|||+|+.|+.+|..+.. .+.+|.++++.. +... + ...
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 80 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQ--LGLKTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDF 80 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHh--CCCeEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence 4579999999999999999987 489999999752 2100 0 000
Q ss_pred -------------HHHHHHHHHHhCCcEEEeCceEeecccC-----CCceeEEcCCC--cEEeccEEEEccCCCCC
Q 022896 181 -------------AGDKTRDWLISKKVDVKLGERVNLDSVS-----EGSDTYLTSTG--DTINADCHFLCTGKPVG 236 (290)
Q Consensus 181 -------------~~~~~~~~~~~~gi~~~~~~~v~~i~~~-----~~~~~v~~~~g--~~~~~d~vv~a~G~~~~ 236 (290)
+.....+.+++.|++++.+.- +.+... ++.+.+.+.+| +++.+|.+|+|||..|.
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a-~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~ 155 (472)
T PRK05976 81 AKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIG-RILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPV 155 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCC
Confidence 111223445677999998753 333322 22567777676 47999999999999885
No 348
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.85 E-value=0.00011 Score=69.13 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=63.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLDS 206 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~ 206 (290)
+++|+|||+|+.|+.+|..|+. .+.+|+++++.+.+... .+.+......+.+.+.|++++.++...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr--~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d--- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLAR--AGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD--- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc---
Confidence 5799999999999999999986 58999999987654322 123444455567788899999874210
Q ss_pred cCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 207 VSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 207 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
+...+.....+|.|++|+|.++
T Consensus 612 -------~~ve~l~~~gYDaVIIATGA~~ 633 (1012)
T TIGR03315 612 -------LTVAELKNQGYKYVILAIGAWK 633 (1012)
T ss_pred -------eEhhhhhcccccEEEECCCCCC
Confidence 1122233466999999999875
No 349
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.85 E-value=0.00012 Score=64.55 Aligned_cols=83 Identities=18% Similarity=0.196 Sum_probs=64.9
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeE
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY 214 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v 214 (290)
.+++++|+|+|.+|+++|..|.. .+.+|+++++.+. .....+.+.+++.|++++.+..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~--~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~----------- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLE--LGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT----------- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc-----------
Confidence 57899999999999999999986 4889999886653 334455667888999998876542
Q ss_pred EcCCCcEEeccEEEEccCCCCCchhhcc
Q 022896 215 LTSTGDTINADCHFLCTGKPVGSDWLKD 242 (290)
Q Consensus 215 ~~~~g~~~~~d~vv~a~G~~~~~~~l~~ 242 (290)
....+|.||+++|..|+.+++..
T Consensus 75 -----~~~~~D~Vv~s~Gi~~~~~~~~~ 97 (480)
T PRK01438 75 -----LPEDTDLVVTSPGWRPDAPLLAA 97 (480)
T ss_pred -----ccCCCCEEEECCCcCCCCHHHHH
Confidence 12458999999999998887543
No 350
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.81 E-value=7.8e-05 Score=65.27 Aligned_cols=94 Identities=22% Similarity=0.352 Sum_probs=58.2
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccccc-ceEE-eeeeeeeec
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVN-GRIV-ASPAINITE 89 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~v~~~~~ 89 (290)
..+++|||+|+.|+.+|..|++ |.+|+++++.+.+.... .+.... ...+.+.. +.++ ...+..+..
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------d~~~~~----~~~~~l~~~I~i~~~~~v~~i~~ 237 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLE-------DPEVSK----QAQKILSKEFKIKLGAKVTSVEK 237 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcch-------hHHHHH----HHHHHHhhccEEEcCCEEEEEEE
Confidence 4789999999999999999976 99999999987653211 011100 01111110 2222 234444432
Q ss_pred c---eEE--e--cCceEEeccEEEEccCCCCCCCC
Q 022896 90 N---EVL--T--AEGRRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 90 ~---~v~--~--~~~~~~~~~~vi~a~G~~~~~p~ 117 (290)
. .+. . .++.++.+|.+++|+|..|+.+.
T Consensus 238 ~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 238 SGDEKVEELEKGGKTETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred cCCceEEEEEcCCceEEEEeCEEEEccCCccCCCC
Confidence 1 232 1 23357899999999999988764
No 351
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.79 E-value=0.00012 Score=64.20 Aligned_cols=89 Identities=20% Similarity=0.370 Sum_probs=65.9
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
.+++++|||+|+.|+.+|..+.. .+.+|+++++.+.+... ...++.....+.+.+.|++++.++.+..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~- 218 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR--AGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK- 218 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-
Confidence 45799999999999999999986 58899999987665321 2334555666778899999999987731
Q ss_pred ccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896 206 SVSEGSDTYLTSTGDTINADCHFLCTGKP 234 (290)
Q Consensus 206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 234 (290)
... . +.....+|.|++|+|..
T Consensus 219 ~~~-------~-~~~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 219 DIT-------A-EELLAEYDAVFLGTGAY 239 (471)
T ss_pred cCC-------H-HHHHhhCCEEEEecCCC
Confidence 110 0 11135799999999997
No 352
>PRK08275 putative oxidoreductase; Provisional
Probab=97.79 E-value=1.8e-05 Score=70.63 Aligned_cols=35 Identities=29% Similarity=0.479 Sum_probs=31.4
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEY 46 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~ 46 (290)
..+||+|||||.|||+||.++++ |.+|+|+||...
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 35899999999999999999964 689999999875
No 353
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.78 E-value=0.00021 Score=63.56 Aligned_cols=107 Identities=18% Similarity=0.222 Sum_probs=77.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCC-CCeEEEEecCcccc-------ccCC-----hhHHHHHHHHHHhCCcEEEeCceE
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLL-------EFIG-----PKAGDKTRDWLISKKVDVKLGERV 202 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~-~~~v~~~~~~~~~~-------~~~~-----~~~~~~~~~~~~~~gi~~~~~~~v 202 (290)
..+++|||+|..|..+.+++.+..+ ...++++...++.. +.+. .++...-.++.+++||+++.+.++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 4689999999999999988876322 24677776444321 1111 134444568889999999999999
Q ss_pred eecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcccc
Q 022896 203 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 244 (290)
Q Consensus 203 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~~~ 244 (290)
..+ +.....|.++.|.++.||.+++|||+.|..+-+++..
T Consensus 83 ~~i--dr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~ 122 (793)
T COG1251 83 IQI--DRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSD 122 (793)
T ss_pred EEe--ccCcceEEccCCcEeecceeEEecCccccccCCCCCC
Confidence 544 4556678889999999999999999998765555544
No 354
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.77 E-value=2.5e-05 Score=70.09 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=31.1
Q ss_pred CCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYF 47 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~ 47 (290)
.+||+|||||.|||+||..+++ +.+|+|+||....
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~ 41 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM 41 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 5899999999999999999974 4899999998653
No 355
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.75 E-value=3.1e-05 Score=74.84 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=34.9
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccc
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT 50 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~ 50 (290)
....||||||+|.||++||.++++ |.+|+|+||....++.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 346999999999999999999976 9999999999876543
No 356
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.75 E-value=2.6e-05 Score=69.95 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=29.3
Q ss_pred cEEEEcCChHHHHHHHHhc----c-CCcEEEEcCCCC
Q 022896 15 RVVVIGGGVAGSLVAKSLQ----F-SADVTLIDPKEY 46 (290)
Q Consensus 15 dvvIIGaG~aGl~~A~~L~----~-g~~v~vie~~~~ 46 (290)
||||||||.|||+||..++ + |.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999996 4 899999999764
No 357
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.75 E-value=3.5e-05 Score=68.21 Aligned_cols=38 Identities=32% Similarity=0.244 Sum_probs=34.0
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE 48 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~ 48 (290)
..++||||||||.|||.||..++. |.+|+|+||....+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 447999999999999999999986 99999999988644
No 358
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.75 E-value=8.1e-05 Score=65.30 Aligned_cols=96 Identities=19% Similarity=0.233 Sum_probs=59.3
Q ss_pred CCcEEEEcCChHHHHHHHHhc---c-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeee
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQ---F-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINI 87 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~---~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~ 87 (290)
..+++|||||+.|+.+|..+. + |.+|+|+++.+.+.... .+.........+.. .++.++ ...+..+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~-------d~~~~~~l~~~L~~--~GI~i~~~~~v~~i 257 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGF-------DSTLRKELTKQLRA--NGINIMTNENPAKV 257 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccccc-------CHHHHHHHHHHHHH--cCCEEEcCCEEEEE
Confidence 478999999999999997653 3 89999999987643111 11111111111111 123333 2334444
Q ss_pred ecc-----eEEecCceEEeccEEEEccCCCCCCCC
Q 022896 88 TEN-----EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 88 ~~~-----~v~~~~~~~~~~~~vi~a~G~~~~~p~ 117 (290)
... .+.+.++.++.+|.+++|+|..|+...
T Consensus 258 ~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~ 292 (486)
T TIGR01423 258 TLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQT 292 (486)
T ss_pred EEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCccc
Confidence 321 355556778999999999999987653
No 359
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00044 Score=52.61 Aligned_cols=98 Identities=23% Similarity=0.220 Sum_probs=71.0
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEE--------------------EecCcccccc-CChhHHHHHHHHHHhCCc
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTL--------------------VHKGSRLLEF-IGPKAGDKTRDWLISKKV 194 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~--------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~gi 194 (290)
..+++|||+|+.+...|.+++.. +.+-.+ ++..+.|... ..+++.+.+++..++.|.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaara--elkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt 85 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARA--ELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGT 85 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhc--ccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcc
Confidence 46899999999998888877642 322222 2233333322 356899999999999999
Q ss_pred EEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc
Q 022896 195 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 237 (290)
Q Consensus 195 ~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 237 (290)
+++.. .|.+++.+...+.+-++. +.+.+|.||+|||....-
T Consensus 86 ~i~tE-tVskv~~sskpF~l~td~-~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 86 EIITE-TVSKVDLSSKPFKLWTDA-RPVTADAVILATGASAKR 126 (322)
T ss_pred eeeee-ehhhccccCCCeEEEecC-CceeeeeEEEecccceee
Confidence 99866 566677777777776644 479999999999987643
No 360
>PLN02976 amine oxidase
Probab=97.73 E-value=3.3e-05 Score=73.82 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=37.3
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhh
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWAS 53 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~ 53 (290)
..+||+|||||++|+++|++|.+ |++|+|||+++.+|+.+..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 45899999999999999999975 9999999999988876544
No 361
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.71 E-value=3.6e-05 Score=68.03 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=31.4
Q ss_pred CCCCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCC
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY 46 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~ 46 (290)
..+.||+|||+|.|||+||.+++ +.+|+|+||...
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa-~~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA-PRPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC-cCCEEEEECCCC
Confidence 34699999999999999999997 679999999875
No 362
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.70 E-value=3.5e-05 Score=69.06 Aligned_cols=35 Identities=31% Similarity=0.308 Sum_probs=31.1
Q ss_pred CCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYF 47 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~ 47 (290)
.+||+|||||.|||+||..+++ |.+|+|+||....
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~ 40 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPM 40 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 5899999999999999999964 5899999998753
No 363
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.70 E-value=3.6e-05 Score=72.59 Aligned_cols=35 Identities=34% Similarity=0.517 Sum_probs=31.8
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
..+||+|||||.|||+||.++++ |.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 46899999999999999999976 999999999764
No 364
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.70 E-value=0.00017 Score=63.35 Aligned_cols=95 Identities=15% Similarity=0.151 Sum_probs=55.8
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEEe-eeeeeeec-
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITE- 89 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~- 89 (290)
..+++|||||+.|+-+|..|++ |.+|+++++...+.. ..+.........+.. .++.++. ..+..+..
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~--------~d~~~~~~l~~~L~~--~gV~i~~~~~v~~v~~~ 249 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--------FDQDCANKVGEHMEE--HGVKFKRQFVPIKVEQI 249 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccccc--------cCHHHHHHHHHHHHH--cCCEEEeCceEEEEEEc
Confidence 3679999999999999999976 999999997432211 011111111111111 1333332 22233321
Q ss_pred --c-eEEecCc---eEEeccEEEEccCCCCCCCC
Q 022896 90 --N-EVLTAEG---RRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 90 --~-~v~~~~~---~~~~~~~vi~a~G~~~~~p~ 117 (290)
. .+...++ .++.+|.+++|+|..|+...
T Consensus 250 ~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~ 283 (484)
T TIGR01438 250 EAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRK 283 (484)
T ss_pred CCeEEEEEecCCcceEEEeCEEEEEecCCcCCCc
Confidence 1 2434343 37899999999999987653
No 365
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.69 E-value=0.00019 Score=65.38 Aligned_cols=90 Identities=17% Similarity=0.239 Sum_probs=67.0
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------cCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
.+++++|||+|+.|+.+|..|.. .+.+|+++++.+.+.. .++........+.+++.|++++.++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC-
Confidence 47999999999999999999996 4889999998876432 13445555666788899999999987621
Q ss_pred ccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 206 SVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
. +...+ ....+|.|++|+|..+
T Consensus 386 -----~--~~~~~-l~~~~DaV~latGa~~ 407 (639)
T PRK12809 386 -----D--ITFSD-LTSEYDAVFIGVGTYG 407 (639)
T ss_pred -----c--CCHHH-HHhcCCEEEEeCCCCC
Confidence 0 11111 1346899999999864
No 366
>PRK13748 putative mercuric reductase; Provisional
Probab=97.66 E-value=0.00021 Score=64.28 Aligned_cols=94 Identities=20% Similarity=0.298 Sum_probs=57.5
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN 90 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 90 (290)
..+++|||||+.|+-+|..|.+ |.+|+++++...+.. . .+.........+.. .++.++ ...+..+...
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~----~----d~~~~~~l~~~l~~--~gI~i~~~~~v~~i~~~ 339 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFR----E----DPAIGEAVTAAFRA--EGIEVLEHTQASQVAHV 339 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccc----c----CHHHHHHHHHHHHH--CCCEEEcCCEEEEEEec
Confidence 4789999999999999999976 999999998543211 0 11111110111111 133433 3345555322
Q ss_pred ----eEEecCceEEeccEEEEccCCCCCCCC
Q 022896 91 ----EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 91 ----~v~~~~~~~~~~~~vi~a~G~~~~~p~ 117 (290)
.+.++++ ++.+|.+++|+|..|+...
T Consensus 340 ~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~ 369 (561)
T PRK13748 340 DGEFVLTTGHG-ELRADKLLVATGRAPNTRS 369 (561)
T ss_pred CCEEEEEecCC-eEEeCEEEEccCCCcCCCC
Confidence 2333333 6999999999999987653
No 367
>PRK14727 putative mercuric reductase; Provisional
Probab=97.66 E-value=0.00022 Score=62.77 Aligned_cols=92 Identities=18% Similarity=0.266 Sum_probs=57.0
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc--ccceEE-eeeeeeee
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIV-ASPAINIT 88 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~v~~~~ 88 (290)
..+++|||+|+.|+.+|..|++ |.+|+++++...+.. . .+... ..+.+.+ .++.++ ...+..+.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~----~----d~~~~----~~l~~~L~~~GV~i~~~~~V~~i~ 255 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFR----E----DPLLG----ETLTACFEKEGIEVLNNTQASLVE 255 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCc----c----hHHHH----HHHHHHHHhCCCEEEcCcEEEEEE
Confidence 3789999999999999999976 999999998543221 0 01110 1111111 133433 33444443
Q ss_pred cc----eEEecCceEEeccEEEEccCCCCCCCC
Q 022896 89 EN----EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 89 ~~----~v~~~~~~~~~~~~vi~a~G~~~~~p~ 117 (290)
.. .+...++ ++.+|.+++|+|..|+...
T Consensus 256 ~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 256 HDDNGFVLTTGHG-ELRAEKLLISTGRHANTHD 287 (479)
T ss_pred EeCCEEEEEEcCC-eEEeCEEEEccCCCCCccC
Confidence 21 2333343 6889999999999987653
No 368
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.65 E-value=0.00026 Score=64.70 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=65.5
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
.+++|+|||+|+.|+.+|..|.. .+.+|+++++.+.+... +...+.....+.+++.|++++.++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC-
Confidence 46899999999999999999986 58899999987654321 2345555566778889999999987621
Q ss_pred ccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 206 SVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
+ +...+ ....+|.|++|+|...
T Consensus 403 --~-----i~~~~-~~~~~DavilAtGa~~ 424 (654)
T PRK12769 403 --D-----ISLES-LLEDYDAVFVGVGTYR 424 (654)
T ss_pred --c-----CCHHH-HHhcCCEEEEeCCCCC
Confidence 0 11111 1246999999999754
No 369
>PTZ00058 glutathione reductase; Provisional
Probab=97.65 E-value=0.00014 Score=64.79 Aligned_cols=96 Identities=11% Similarity=0.168 Sum_probs=58.2
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeecc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITEN 90 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 90 (290)
..+++|||||..|+.+|..|++ |.+|+++++++.+.... .+.........+.+ .++.++ ...+..+...
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~-------d~~i~~~l~~~L~~--~GV~i~~~~~V~~I~~~ 307 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKF-------DETIINELENDMKK--NNINIITHANVEEIEKV 307 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccC-------CHHHHHHHHHHHHH--CCCEEEeCCEEEEEEec
Confidence 5789999999999999999976 99999999987543111 11111110111111 123332 2334444321
Q ss_pred -----eEEe-cCceEEeccEEEEccCCCCCCCC
Q 022896 91 -----EVLT-AEGRRVVYDYLVIATGHKDPVPK 117 (290)
Q Consensus 91 -----~v~~-~~~~~~~~~~vi~a~G~~~~~p~ 117 (290)
.+.. .++.++.+|.|++|+|..|+...
T Consensus 308 ~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~ 340 (561)
T PTZ00058 308 KEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTED 340 (561)
T ss_pred CCCcEEEEECCCCEEEECCEEEECcCCCCCccc
Confidence 1222 33457999999999999987554
No 370
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.64 E-value=0.00056 Score=58.00 Aligned_cols=94 Identities=21% Similarity=0.288 Sum_probs=62.2
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-----cCChhHH------------------------------
Q 022896 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-----FIGPKAG------------------------------ 182 (290)
Q Consensus 138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-----~~~~~~~------------------------------ 182 (290)
.++|||+|..|+.+|..|.+..++.+|.++++.+.+.+ .....+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 47999999999999999987546889999998764322 1111111
Q ss_pred --------HHHHHHH-HhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 183 --------DKTRDWL-ISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 183 --------~~~~~~~-~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
..+.+.+ ++.+..++.++.|+.+ +++++.+ .+|+++.+|.||.|.|..+
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFKP 138 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCCC
Confidence 0111222 2223336668888766 3444443 6888999999999999775
No 371
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.63 E-value=6.1e-05 Score=67.64 Aligned_cols=40 Identities=33% Similarity=0.362 Sum_probs=34.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccch
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW 51 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~ 51 (290)
.++||+|||+|.+|+++|..+++ |++|+|+|+....++..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence 36899999999999999999975 99999999988766543
No 372
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.63 E-value=0.00024 Score=64.73 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=65.5
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------cCChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
.+++++|||+|+.|+.+|..|.. .+.+|+++++.+.+.. .....+.....+.+++.|++++.++.+. .
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~--~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~ 268 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR--KGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R 268 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C
Confidence 46899999999999999999986 4889999998765421 1234555666777888999999888651 1
Q ss_pred ccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 206 SVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
. +...+. ...+|.|++|+|.++
T Consensus 269 d-------v~~~~~-~~~~DaVilAtGa~~ 290 (652)
T PRK12814 269 D-------ITLEEL-QKEFDAVLLAVGAQK 290 (652)
T ss_pred c-------cCHHHH-HhhcCEEEEEcCCCC
Confidence 1 111111 235999999999875
No 373
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.62 E-value=0.00077 Score=59.11 Aligned_cols=95 Identities=23% Similarity=0.185 Sum_probs=61.1
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC------Chh-----------------------------H
Q 022896 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI------GPK-----------------------------A 181 (290)
Q Consensus 137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~------~~~-----------------------------~ 181 (290)
..++|||+|+.|+.+|..++. .+.+|.++++.+.+...- +.+ +
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~--~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~ 81 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQ--LGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNL 81 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCH
Confidence 479999999999999999987 489999999643322110 000 0
Q ss_pred H--------------HHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCc--EEeccEEEEccCCCCC
Q 022896 182 G--------------DKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD--TINADCHFLCTGKPVG 236 (290)
Q Consensus 182 ~--------------~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~ 236 (290)
. ..+...++..+++++.+.. ++. +++.+.+...+|+ ++.+|.+|+|||.+|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a--~~~-~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~ 149 (466)
T PRK06115 82 AQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG--RLD-GVGKVVVKAEDGSETQLEAKDIVIATGSEPT 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE--EEc-cCCEEEEEcCCCceEEEEeCEEEEeCCCCCC
Confidence 0 1122233445677776542 122 2344566666664 6999999999999874
No 374
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.61 E-value=0.00049 Score=54.02 Aligned_cols=102 Identities=23% Similarity=0.229 Sum_probs=71.8
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC-------------------ChhHHHHHHHH----------
Q 022896 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-------------------GPKAGDKTRDW---------- 188 (290)
Q Consensus 138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-------------------~~~~~~~~~~~---------- 188 (290)
+++|||+|..|+.+|..|.. .+.+|++++++......+ ..++...+.+.
T Consensus 3 siaIVGaGiAGl~aA~~L~~--aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W 80 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALRE--AGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW 80 (331)
T ss_pred cEEEEccchHHHHHHHHHHh--cCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence 68999999999999999997 599999999766543211 00111111111
Q ss_pred --------------------------------HHhCCcEEEeCceEeecccCCCceeEEcCCCc-EEeccEEEEccCCCC
Q 022896 189 --------------------------------LISKKVDVKLGERVNLDSVSEGSDTYLTSTGD-TINADCHFLCTGKPV 235 (290)
Q Consensus 189 --------------------------------~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~-~~~~d~vv~a~G~~~ 235 (290)
+..-..++..++.|+++...++..++.+++|. ...+|.|++++...-
T Consensus 81 ~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ 160 (331)
T COG3380 81 TPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQ 160 (331)
T ss_pred cccccccccCCCCCCCCCCccccCcchHHHHHHHhccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCc
Confidence 22235667889999999888888999886664 678999999988654
Q ss_pred Cchhhc
Q 022896 236 GSDWLK 241 (290)
Q Consensus 236 ~~~~l~ 241 (290)
...+|.
T Consensus 161 ~~~LLt 166 (331)
T COG3380 161 TATLLT 166 (331)
T ss_pred chhhcC
Confidence 455553
No 375
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=97.61 E-value=0.00015 Score=56.39 Aligned_cols=93 Identities=24% Similarity=0.332 Sum_probs=61.7
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcE----------EE--eCceEeec
Q 022896 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD----------VK--LGERVNLD 205 (290)
Q Consensus 138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~----------~~--~~~~v~~i 205 (290)
+.+|+|||..|..+|..|+..++..++.++..++.. ... .....+.+.+++..++ +. .+. | .
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~v-ksv--tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~-v--~ 74 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV-KSV--TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND-V--V 74 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH-HHH--hhHHHHHHHHHhcCccccchhhhcccHHHHHHh-h--h
Confidence 468999999999999999998899999988876532 110 1111222333333322 11 011 2 2
Q ss_pred ccCCCceeEEcCCCcEEeccEEEEccCCCCC
Q 022896 206 SVSEGSDTYLTSTGDTINADCHFLCTGKPVG 236 (290)
Q Consensus 206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 236 (290)
.++...-.+.+.+|+.+.|+.+++|+|++|.
T Consensus 75 ~~~s~ehci~t~~g~~~ky~kKOG~tg~kPk 105 (334)
T KOG2755|consen 75 TWDSSEHCIHTQNGEKLKYFKLCLCTGYKPK 105 (334)
T ss_pred hhccccceEEecCCceeeEEEEEEecCCCcc
Confidence 3344455678889999999999999999984
No 376
>PLN02785 Protein HOTHEAD
Probab=97.60 E-value=7.5e-05 Score=66.87 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=32.4
Q ss_pred CCCcEEEEcCChHHHHHHHHhccCCcEEEEcCCCC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY 46 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~ 46 (290)
..||+||||||.+|+.+|.+|.++.+|+|||++..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCC
Confidence 36999999999999999999988899999999874
No 377
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.56 E-value=1.3e-05 Score=60.08 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=31.7
Q ss_pred CCcEEEEcCChHHHHHHHHhcc---CCcEEEEcCCCCcc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFE 48 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~---g~~v~vie~~~~~~ 48 (290)
..||+|||||.+||++|+++.+ +.+|.+||..-..|
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG 114 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG 114 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence 5899999999999999999962 89999999886554
No 378
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.54 E-value=0.0011 Score=63.39 Aligned_cols=101 Identities=19% Similarity=0.087 Sum_probs=67.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC-----------ChhHHHHHHHHHHhC-CcEEEeCceEe
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-----------GPKAGDKTRDWLISK-KVDVKLGERVN 203 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-gi~~~~~~~v~ 203 (290)
..+|+|||+|+.|+.+|..+.. .+.+|++++..+.+.... ..++...+.+.+++. +++++.++.+.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar--~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~ 240 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAAR--AGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAF 240 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEE
Confidence 4689999999999999999986 589999999876543321 113334455566655 59999999886
Q ss_pred ecccCCCceeEE-------------cCCC-cEEeccEEEEccCCCCCch
Q 022896 204 LDSVSEGSDTYL-------------TSTG-DTINADCHFLCTGKPVGSD 238 (290)
Q Consensus 204 ~i~~~~~~~~v~-------------~~~g-~~~~~d~vv~a~G~~~~~~ 238 (290)
.+........+. ..+. .++.+|.||+|||..+...
T Consensus 241 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~ 289 (985)
T TIGR01372 241 GYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPL 289 (985)
T ss_pred EEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCC
Confidence 653311111110 0011 1588999999999987544
No 379
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.54 E-value=0.0011 Score=59.08 Aligned_cols=95 Identities=23% Similarity=0.218 Sum_probs=66.0
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc-cccc----------------------------------------
Q 022896 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS-RLLE---------------------------------------- 175 (290)
Q Consensus 137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~-~~~~---------------------------------------- 175 (290)
-.|+|||+|..|+++|..++. .+.+|.++++.. .+..
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR--~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAAR--MGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ceEEEECchHHHHHHHHHHHH--cCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 479999999999999998885 588898888762 1100
Q ss_pred -------------cCCh-hHHHHHHHHHHhC-CcEEEeCceEeecccCCCc-eeEEcCCCcEEeccEEEEccCCC
Q 022896 176 -------------FIGP-KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKP 234 (290)
Q Consensus 176 -------------~~~~-~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~ 234 (290)
.++. .+...+.+.+++. |++++ ...++++..+++. ..|.+.+|..+.++.||+|+|..
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 0000 1233445555544 88886 4567776655555 55778889899999999999953
No 380
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.52 E-value=6.8e-05 Score=67.54 Aligned_cols=30 Identities=33% Similarity=0.520 Sum_probs=28.3
Q ss_pred EEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 16 VVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 16 vvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
|+|||+|.|||+||..+++ |.+|+|+||..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 6999999999999999986 99999999987
No 381
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.52 E-value=0.00033 Score=63.47 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=31.8
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcc
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE 48 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~ 48 (290)
..+++|||||+.|+.+|..|.+ |.+|+++|+.+.+.
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll 348 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL 348 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 4689999999999999999876 99999999987643
No 382
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.52 E-value=0.0001 Score=65.43 Aligned_cols=63 Identities=14% Similarity=0.068 Sum_probs=46.4
Q ss_pred HHHHHHHHhCCcEEEeCceEeecccCCCc---eeEEcCCC---c-EEeccEEEEccCCCCCchhhccccc
Q 022896 183 DKTRDWLISKKVDVKLGERVNLDSVSEGS---DTYLTSTG---D-TINADCHFLCTGKPVGSDWLKDTIL 245 (290)
Q Consensus 183 ~~~~~~~~~~gi~~~~~~~v~~i~~~~~~---~~v~~~~g---~-~~~~d~vv~a~G~~~~~~~l~~~~~ 245 (290)
..+...++..++++.+++.++.+..+++. +.+...++ + ....+.||+|+|...++.+|..+++
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgi 276 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGI 276 (542)
T ss_pred hcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCC
Confidence 33445677788999999999999998887 33333333 2 3568999999998877777776664
No 383
>PRK06126 hypothetical protein; Provisional
Probab=97.50 E-value=0.0012 Score=59.23 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=40.5
Q ss_pred HHHHHHHHHh-CCcEEEeCceEeecccCCCceeEEc---CCCc--EEeccEEEEccCCCCC
Q 022896 182 GDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLT---STGD--TINADCHFLCTGKPVG 236 (290)
Q Consensus 182 ~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~~v~~---~~g~--~~~~d~vv~a~G~~~~ 236 (290)
...+.+.+++ .|+++++++++++++.+++++.+.+ .+|+ ++.+|.||.|.|..+.
T Consensus 129 ~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 129 EPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred HHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 3344555554 4899999999999988777655543 3454 6899999999998753
No 384
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.47 E-value=0.00012 Score=65.35 Aligned_cols=62 Identities=11% Similarity=-0.001 Sum_probs=43.0
Q ss_pred HHHHHHhCCcEEEeCceEeecccCCCc-eeEEcC-CCc---EEeccEEEEccCCCCCchhhcccccc
Q 022896 185 TRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTS-TGD---TINADCHFLCTGKPVGSDWLKDTILK 246 (290)
Q Consensus 185 ~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~-~g~---~~~~d~vv~a~G~~~~~~~l~~~~~~ 246 (290)
+....++.|++++.++.|+++..+++. ..|+.. +++ .+.++.||+|.|..-.+.+|..++++
T Consensus 200 l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG 266 (532)
T TIGR01810 200 LHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIG 266 (532)
T ss_pred hhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCC
Confidence 444444678999999999999887554 334332 222 35799999999986567777666653
No 385
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.45 E-value=0.00053 Score=63.78 Aligned_cols=90 Identities=17% Similarity=0.269 Sum_probs=70.1
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
.+++|.|||+|++|+.+|.+|.. .+..|++++|.++.... +++.+.+.=.+.+.+.||+|+.+++|-.-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk--~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~ 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNK--AGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhh--cCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc
Confidence 47999999999999999999986 69999999999987542 34456666677889999999999887211
Q ss_pred ccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 206 SVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
+. -|+-.-+.|.+|+|+|+..
T Consensus 1862 --------vs-~d~l~~~~daiv~a~gst~ 1882 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGSTT 1882 (2142)
T ss_pred --------cc-HHHHhhccCeEEEEeCCCC
Confidence 11 1333457899999999753
No 386
>PLN02546 glutathione reductase
Probab=97.39 E-value=0.00044 Score=61.65 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=56.6
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCccccccccccccccccceEE-eeeeeeeec-
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITE- 89 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~- 89 (290)
..+++|||||+.|+.+|..|.. +.+|+++++.+.+...+ .+.........+.. .+++++ ...+..+..
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~-------d~~~~~~l~~~L~~--~GV~i~~~~~v~~i~~~ 322 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGF-------DEEVRDFVAEQMSL--RGIEFHTEESPQAIIKS 322 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccccc-------CHHHHHHHHHHHHH--CCcEEEeCCEEEEEEEc
Confidence 4789999999999999999976 99999999877542111 11100000001111 133333 233444432
Q ss_pred --c--eEEecCceEEeccEEEEccCCCCCCC
Q 022896 90 --N--EVLTAEGRRVVYDYLVIATGHKDPVP 116 (290)
Q Consensus 90 --~--~v~~~~~~~~~~~~vi~a~G~~~~~p 116 (290)
. .+...++....+|.+++|+|..|+..
T Consensus 323 ~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 323 ADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred CCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 1 23333444445899999999998765
No 387
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.38 E-value=0.001 Score=59.79 Aligned_cols=90 Identities=22% Similarity=0.378 Sum_probs=64.4
Q ss_pred hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceE-e
Q 022896 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERV-N 203 (290)
Q Consensus 134 ~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v-~ 203 (290)
..+++|+|+|+|+.|+.+|..+.. .+.+|+++++.+.+... +..+....-.+.+++.|+++..++.+ .
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~ 212 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGE 212 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECC
Confidence 467999999999999999999986 47889999977654321 23344555556778899999988766 3
Q ss_pred ecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 204 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 204 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
.+..+. ....+|.|++|+|.+.
T Consensus 213 ~~~~~~----------~~~~~D~Vi~AtG~~~ 234 (564)
T PRK12771 213 DITLEQ----------LEGEFDAVFVAIGAQL 234 (564)
T ss_pred cCCHHH----------HHhhCCEEEEeeCCCC
Confidence 222110 1124899999999875
No 388
>PRK13984 putative oxidoreductase; Provisional
Probab=97.37 E-value=0.00086 Score=60.84 Aligned_cols=89 Identities=26% Similarity=0.269 Sum_probs=65.3
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
.+++++|||+|+.|+.+|..|.. .+.+|+++++.+..... +..++.....+.+++.|++++.++.+..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~--~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~- 358 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLAT--MGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK- 358 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC-
Confidence 57889999999999999999986 48899999887654221 2234445556778889999999988731
Q ss_pred ccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896 206 SVSEGSDTYLTSTGDTINADCHFLCTGKP 234 (290)
Q Consensus 206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 234 (290)
+ +...+ ....+|.||+|+|..
T Consensus 359 --~-----~~~~~-~~~~yD~vilAtGa~ 379 (604)
T PRK13984 359 --D-----IPLEE-LREKHDAVFLSTGFT 379 (604)
T ss_pred --c-----CCHHH-HHhcCCEEEEEcCcC
Confidence 1 11111 135799999999976
No 389
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.37 E-value=0.00099 Score=53.55 Aligned_cols=103 Identities=22% Similarity=0.353 Sum_probs=66.9
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhH---HHHHHHH---------HHhCCcEEEeCceE
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKA---GDKTRDW---------LISKKVDVKLGERV 202 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~---------~~~~gi~~~~~~~v 202 (290)
.--+++|+|||..|+.+|..+....+..+|.++++.+.- .++|.+ ...++.. +--.|.+++. ..|
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H--yYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~-ekv 114 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH--YYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIK-EKV 114 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc--ccCcceEEeccchhhhhhccCcccccccCCcHHHH-HHH
Confidence 346899999999999999999887777889999876542 111110 0001100 0111222221 233
Q ss_pred eecccCCCceeEEcCCCcEEeccEEEEccCCCCCchhhcc
Q 022896 203 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKD 242 (290)
Q Consensus 203 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~l~~ 242 (290)
+ +.++++.++.+.+|++|.+|.+|+|+|.+-+.+.++.
T Consensus 115 ~--~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkG 152 (446)
T KOG3851|consen 115 K--EFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKG 152 (446)
T ss_pred H--hcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcC
Confidence 2 3456667788899999999999999999876666554
No 390
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.33 E-value=0.0039 Score=55.60 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=64.0
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc------------------cc-----------------------
Q 022896 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------------------EF----------------------- 176 (290)
Q Consensus 138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~------------------~~----------------------- 176 (290)
.++|+|+|..|+++|..++. .+.+|.++++..... ..
T Consensus 2 DViVIGaG~AGl~aA~ala~--~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln 79 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAAR--MGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLN 79 (617)
T ss_pred eEEEECccHHHHHHHHHHHH--CCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecc
Confidence 58899999999999998886 477787777542100 00
Q ss_pred -------------CCh-hHHHHHHHHHHhC-CcEEEeCceEeecccC-CC-ceeEEcCCCcEEeccEEEEccCCCC
Q 022896 177 -------------IGP-KAGDKTRDWLISK-KVDVKLGERVNLDSVS-EG-SDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 177 -------------~~~-~~~~~~~~~~~~~-gi~~~~~~~v~~i~~~-~~-~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
+++ .+...+.+.+++. |++++.+ .+..+..+ ++ ...|.+.+|..+.|+.||+|+|...
T Consensus 80 ~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 80 SSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred cCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 000 1223455666665 7888766 45555443 33 3677888888999999999999884
No 391
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.31 E-value=0.0041 Score=53.29 Aligned_cols=99 Identities=13% Similarity=0.105 Sum_probs=67.9
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc--cc--------------------------------------
Q 022896 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--EF-------------------------------------- 176 (290)
Q Consensus 137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~--~~-------------------------------------- 176 (290)
.+|+|||+|+.|+-+|..|.+ .+.+|+++++.+... ..
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD 80 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH--CCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC
Confidence 579999999999999999986 488888888765310 00
Q ss_pred -------C-------------ChhHHHHHHHHHHhCCcEEEeCceEeeccc-CCCceeEEcC-CCc--EEeccEEEEccC
Q 022896 177 -------I-------------GPKAGDKTRDWLISKKVDVKLGERVNLDSV-SEGSDTYLTS-TGD--TINADCHFLCTG 232 (290)
Q Consensus 177 -------~-------------~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~-~~~~~~v~~~-~g~--~~~~d~vv~a~G 232 (290)
+ ...+...+.+.+.+.|++++.+..+..+.. +++...+.+. +|+ ++++|.||-|-|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG 160 (390)
T TIGR02360 81 GQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDG 160 (390)
T ss_pred CEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCC
Confidence 0 012234455666667888888887655533 4445556554 665 689999999999
Q ss_pred CCCCc
Q 022896 233 KPVGS 237 (290)
Q Consensus 233 ~~~~~ 237 (290)
..+..
T Consensus 161 ~~S~V 165 (390)
T TIGR02360 161 FHGVS 165 (390)
T ss_pred Cchhh
Confidence 87543
No 392
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.29 E-value=0.0009 Score=57.88 Aligned_cols=89 Identities=21% Similarity=0.301 Sum_probs=68.2
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc---------CChhHHHHHHHHHHhCCcEEEeCceEeec
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLD 205 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~v~~i 205 (290)
.+++|+|||+|+.++.+|..|+. .+..|+++.+.+..... +..++.....+.|++.|++|+.++.+-.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~--~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~- 198 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSR--AGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR- 198 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHh--CCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC-
Confidence 46999999999999999999996 59999999887765432 3457778888999999999999998721
Q ss_pred ccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896 206 SVSEGSDTYLTSTGDTINADCHFLCTGKP 234 (290)
Q Consensus 206 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 234 (290)
. ++.+ .-.-++|.|++++|..
T Consensus 199 -----~--it~~-~L~~e~Dav~l~~G~~ 219 (457)
T COG0493 199 -----D--ITLE-ELLKEYDAVFLATGAG 219 (457)
T ss_pred -----c--CCHH-HHHHhhCEEEEecccc
Confidence 1 1111 1123469999999964
No 393
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.23 E-value=0.00048 Score=59.64 Aligned_cols=94 Identities=31% Similarity=0.398 Sum_probs=25.9
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc-----------------------------------------
Q 022896 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----------------------------------------- 176 (290)
Q Consensus 138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~----------------------------------------- 176 (290)
.|+|||+|..|+-+|..++. .+.+|.++++.+.+...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr--~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~ 78 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAAR--AGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDR 78 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHH--TTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-----------
T ss_pred CEEEECccHHHHHHHHHHHH--CCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccc
Confidence 48999999999999998886 59999999977653210
Q ss_pred --------CCh-hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEcC--CC-cEEeccEEEEccCC
Q 022896 177 --------IGP-KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTS--TG-DTINADCHFLCTGK 233 (290)
Q Consensus 177 --------~~~-~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~~--~g-~~~~~d~vv~a~G~ 233 (290)
+++ .+...+.+.+++.|+++++++.+..+..+++. ..|... +| .++.++.+|-|||-
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 79 YGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 001 11223556667789999999999999887755 333333 34 47999999999993
No 394
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.22 E-value=0.007 Score=51.98 Aligned_cols=95 Identities=20% Similarity=0.207 Sum_probs=61.8
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc------------c-----------------------------
Q 022896 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE------------F----------------------------- 176 (290)
Q Consensus 138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~------------~----------------------------- 176 (290)
+|+|||+|+.|..+|..++. .+.+|.++++...... .
T Consensus 2 ~VvIVGaGPAG~~aA~~la~--~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~ 79 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS--AGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGR 79 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh--CCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEecc
Confidence 68999999999999998886 4778888876532100 0
Q ss_pred ----------C-ChhHHHHHHHHHHhCCcEEEeCceEeeccc---CCCceeEEc--CC-----C--cEEeccEEEEccCC
Q 022896 177 ----------I-GPKAGDKTRDWLISKKVDVKLGERVNLDSV---SEGSDTYLT--ST-----G--DTINADCHFLCTGK 233 (290)
Q Consensus 177 ----------~-~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~---~~~~~~v~~--~~-----g--~~~~~d~vv~a~G~ 233 (290)
+ ...+.+.+.+.+.+.|++++.++ +..++. .++...+.. .+ | .++.++.||.|.|.
T Consensus 80 ~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~ 158 (398)
T TIGR02028 80 TLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGA 158 (398)
T ss_pred CCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCc
Confidence 0 01233346666777899998775 554532 223334432 21 3 37899999999997
Q ss_pred CC
Q 022896 234 PV 235 (290)
Q Consensus 234 ~~ 235 (290)
.+
T Consensus 159 ~S 160 (398)
T TIGR02028 159 NS 160 (398)
T ss_pred ch
Confidence 65
No 395
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.22 E-value=0.00045 Score=55.88 Aligned_cols=34 Identities=29% Similarity=0.474 Sum_probs=31.2
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
.+|++|||||.+||-+|.+|+. |.+|+|+|.+..
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 6899999999999999999985 999999998763
No 396
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.22 E-value=0.00037 Score=61.28 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=33.4
Q ss_pred CCCCcEEEEcCChHHHHHHHHhcc--CCcEEEEcCCCCc
Q 022896 11 GKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYF 47 (290)
Q Consensus 11 ~~~~dvvIIGaG~aGl~~A~~L~~--g~~v~vie~~~~~ 47 (290)
...||.||||||.||..+|..|.+ ..+|+|+|++...
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 457999999999999999999987 5999999998765
No 397
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.12 E-value=0.0018 Score=60.44 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=31.1
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG 170 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~ 170 (290)
.+++|+|||+|+.|+.+|..|.. .+.+|+++++.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~--~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLR--SGHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHh--CCCeEEEEccc
Confidence 57899999999999999999996 59999999974
No 398
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.11 E-value=0.0057 Score=46.81 Aligned_cols=100 Identities=20% Similarity=0.120 Sum_probs=65.7
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC-------------------------------------
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI------------------------------------- 177 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~------------------------------------- 177 (290)
....++|+|+|++|+.+|..|++. +.+|.+++++..+....
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~--g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~ 93 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA--GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVA 93 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH--TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES
T ss_pred ccCCEEEECCChhHHHHHHHHHHC--CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEE
Confidence 457899999999999999999985 99999999776543210
Q ss_pred -ChhHHHHHHHHHHhCCcEEEeCceEeecccCCC-c-eeEEc------CCC-----cEEeccEEEEccCCCCC
Q 022896 178 -GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-S-DTYLT------STG-----DTINADCHFLCTGKPVG 236 (290)
Q Consensus 178 -~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~-~-~~v~~------~~g-----~~~~~d~vv~a~G~~~~ 236 (290)
..++...+.....+.|++++..+.++++-..++ . ..+.. ..| -.+++..||-|||+...
T Consensus 94 d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~ 166 (230)
T PF01946_consen 94 DSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAE 166 (230)
T ss_dssp -HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSS
T ss_pred cHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchH
Confidence 113444455566668999999999988876553 3 22221 222 27899999999998764
No 399
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.07 E-value=0.00021 Score=56.40 Aligned_cols=41 Identities=34% Similarity=0.574 Sum_probs=34.1
Q ss_pred cCCCCcEEEEcCChHHHHHHHHhcc-------CCcEEEEcCCCCcccc
Q 022896 10 EGKNKRVVVIGGGVAGSLVAKSLQF-------SADVTLIDPKEYFEIT 50 (290)
Q Consensus 10 ~~~~~dvvIIGaG~aGl~~A~~L~~-------g~~v~vie~~~~~~~~ 50 (290)
+.+.++++|||||+.|.++|++|.+ .+++++||+....++.
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga 54 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA 54 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence 3446999999999999999999953 2799999998876544
No 400
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.06 E-value=0.013 Score=51.11 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=62.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc----------------------------------------
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------------------------------------- 175 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------------------------------------- 175 (290)
.-+|+|||+|+.|.-+|..++. .+.+|.++++......
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~--~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~ 116 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAK--GGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDI 116 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEe
Confidence 3578888888888888888875 4777877775532100
Q ss_pred --------c---C-ChhHHHHHHHHHHhCCcEEEeCceEeecccC---CCceeEEcCC-------C--cEEeccEEEEcc
Q 022896 176 --------F---I-GPKAGDKTRDWLISKKVDVKLGERVNLDSVS---EGSDTYLTST-------G--DTINADCHFLCT 231 (290)
Q Consensus 176 --------~---~-~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~---~~~~~v~~~~-------g--~~~~~d~vv~a~ 231 (290)
. . ...+.+.+.+.+.+.|++++.+ .++++..+ ++.+.+.+.+ | .++.+|.||-|.
T Consensus 117 ~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgAD 195 (450)
T PLN00093 117 GKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGAD 195 (450)
T ss_pred cccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcC
Confidence 0 0 1124445666777889999866 46555532 2334444321 3 479999999999
Q ss_pred CCCC
Q 022896 232 GKPV 235 (290)
Q Consensus 232 G~~~ 235 (290)
|...
T Consensus 196 G~~S 199 (450)
T PLN00093 196 GANS 199 (450)
T ss_pred Ccch
Confidence 9754
No 401
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02 E-value=0.012 Score=50.32 Aligned_cols=37 Identities=16% Similarity=0.350 Sum_probs=28.6
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCC-eEEEEecCccc
Q 022896 137 RSILIVGGGPTGVELAGEIAVDFPEK-KVTLVHKGSRL 173 (290)
Q Consensus 137 ~~v~iiG~g~~~~~~a~~l~~~~~~~-~v~~~~~~~~~ 173 (290)
.+|+|||+|.+|+.+|..|.+..... .+.++++.+.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 57999999999999999987643333 38888876654
No 402
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.99 E-value=0.0076 Score=50.60 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=69.8
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc--cC---------ChhHHHHHHHHHHhC--CcEEEeCce
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE--FI---------GPKAGDKTRDWLISK--KVDVKLGER 201 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~--~~---------~~~~~~~~~~~~~~~--gi~~~~~~~ 201 (290)
..++|+|+|+|-.|..+...|.. .-.+|+++.++..|+- .+ .+.+.+.+....+.. +++++ ..+
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldt--s~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~-eAe 130 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDT--SLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYL-EAE 130 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccc--cccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEE-ecc
Confidence 57899999999999999988875 5778999998877631 11 235666777777666 34444 334
Q ss_pred EeecccCCCceeE--EcCCC----cEEeccEEEEccCCCCCc
Q 022896 202 VNLDSVSEGSDTY--LTSTG----DTINADCHFLCTGKPVGS 237 (290)
Q Consensus 202 v~~i~~~~~~~~v--~~~~g----~~~~~d~vv~a~G~~~~~ 237 (290)
-..++.+.+.+.. .+.++ -.+.||.+|+|+|..+++
T Consensus 131 c~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T 172 (491)
T KOG2495|consen 131 CTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT 172 (491)
T ss_pred cEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCC
Confidence 4445555555443 33444 368899999999999875
No 403
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.99 E-value=0.015 Score=53.02 Aligned_cols=101 Identities=24% Similarity=0.325 Sum_probs=68.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc----------------------------------------
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------------------------------------- 175 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------------------------------------- 175 (290)
..+|+|||+|++|+-+|..|..+ .+.++.++++.+....
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~-~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAF-PDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcC-CCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 46899999999999999999851 3778888875432100
Q ss_pred ------------------c--------C-ChhHHHHHHHHHHhCC--cEEEeCceEeecccCCC---ceeEEcC------
Q 022896 176 ------------------F--------I-GPKAGDKTRDWLISKK--VDVKLGERVNLDSVSEG---SDTYLTS------ 217 (290)
Q Consensus 176 ------------------~--------~-~~~~~~~~~~~~~~~g--i~~~~~~~v~~i~~~~~---~~~v~~~------ 217 (290)
. . ...+...+.+.+.+.+ +++..++.+++++.++. .+++++.
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~ 190 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEH 190 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCC
Confidence 0 0 0123444566666665 57888999988876542 3555543
Q ss_pred CC--cEEeccEEEEccCCCCCc
Q 022896 218 TG--DTINADCHFLCTGKPVGS 237 (290)
Q Consensus 218 ~g--~~~~~d~vv~a~G~~~~~ 237 (290)
+| +++.+|.||-|-|.++..
T Consensus 191 ~g~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 191 EGEEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred CCceEEEEeCEEEECCCCchHH
Confidence 35 479999999999987644
No 404
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.97 E-value=0.00035 Score=59.94 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=35.7
Q ss_pred CCCcEEEEcCChHHHHHHHHhc-cCCcEEEEcCCCCcccchh
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA 52 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~-~g~~v~vie~~~~~~~~~~ 52 (290)
..+||+|||||..|..||.-.+ ||+++.++|+++...+..+
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS 107 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence 3599999999999999999986 7999999999997665543
No 405
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.96 E-value=0.00079 Score=55.96 Aligned_cols=32 Identities=34% Similarity=0.535 Sum_probs=29.3
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-----CCcEEEEcCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-----SADVTLIDPK 44 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-----g~~v~vie~~ 44 (290)
.+||+||||||+|++.|..|+. ..+|+++|..
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 6999999999999999999963 5899999987
No 406
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.94 E-value=0.0008 Score=57.64 Aligned_cols=55 Identities=11% Similarity=-0.099 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCc--eeEEcCCCcEEeccEEEEccCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
++.+.+-+...-.|..+..++.|.++..++++ ..+. .+|+++.|+.||....+-|
T Consensus 233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~-s~ge~v~~k~vI~dpsy~p 289 (438)
T PF00996_consen 233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVK-SEGEVVKAKKVIGDPSYLP 289 (438)
T ss_dssp HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEE-ETTEEEEESEEEEEGGGBG
T ss_pred cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEe-cCCEEEEcCEEEECCccCc
Confidence 88889998888999999999999999875544 3334 4888999999998877665
No 407
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.93 E-value=0.012 Score=53.53 Aligned_cols=101 Identities=19% Similarity=0.113 Sum_probs=66.7
Q ss_pred hcCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc---------cCChhHHHH--------------------
Q 022896 134 KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDK-------------------- 184 (290)
Q Consensus 134 ~~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~-------------------- 184 (290)
....+|+|||+|..|+-+|..|.+ .+.+|+++++.+.... .+.+...+.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r--~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~ 156 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKK--KGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITG 156 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccc
Confidence 456889999999999999999997 4889999997642100 011100000
Q ss_pred ---------------------------------------HHHHHHh-CCcE-EEeCceEeecccCCCceeEEcCCCcEEe
Q 022896 185 ---------------------------------------TRDWLIS-KKVD-VKLGERVNLDSVSEGSDTYLTSTGDTIN 223 (290)
Q Consensus 185 ---------------------------------------~~~~~~~-~gi~-~~~~~~v~~i~~~~~~~~v~~~~g~~~~ 223 (290)
+.+.|.+ .+.+ ++.+++|++++.+++.+.+.+.+|+++.
T Consensus 157 ~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~ 236 (668)
T PLN02927 157 DRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYE 236 (668)
T ss_pred ceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEE
Confidence 1111111 1111 3456677777666667778888888899
Q ss_pred ccEEEEccCCCCC
Q 022896 224 ADCHFLCTGKPVG 236 (290)
Q Consensus 224 ~d~vv~a~G~~~~ 236 (290)
+|.||.|-|.+..
T Consensus 237 aDlVVGADG~~S~ 249 (668)
T PLN02927 237 GDLLVGADGIWSK 249 (668)
T ss_pred cCEEEECCCCCcH
Confidence 9999999998753
No 408
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.92 E-value=0.0012 Score=58.14 Aligned_cols=33 Identities=42% Similarity=0.504 Sum_probs=29.8
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
..+++|||+|.+|+++|..|++ |.+|+++|+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999975 99999999765
No 409
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.92 E-value=0.0029 Score=53.86 Aligned_cols=83 Identities=24% Similarity=0.182 Sum_probs=64.5
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC-------Ch------hHHHHHHHHHHhCCcEEEeCce
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-------GP------KAGDKTRDWLISKKVDVKLGER 201 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-------~~------~~~~~~~~~~~~~gi~~~~~~~ 201 (290)
..++++|||||.+|++.|..|++ .+.+++++++.+.+...+ +. -+...+.+.....+|++++.++
T Consensus 123 v~~svLVIGGGvAGitAAl~La~--~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~Tyae 200 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELAD--MGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAE 200 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHH--cCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeee
Confidence 35899999999999999999997 599999999988775431 11 1334455555667999999999
Q ss_pred EeecccCCCceeEEcCCC
Q 022896 202 VNLDSVSEGSDTYLTSTG 219 (290)
Q Consensus 202 v~~i~~~~~~~~v~~~~g 219 (290)
|++++.+-+.+++.....
T Consensus 201 V~ev~G~vGnF~vki~kk 218 (622)
T COG1148 201 VEEVSGSVGNFTVKIEKK 218 (622)
T ss_pred eeeecccccceEEEEecc
Confidence 999988888877765443
No 410
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.86 E-value=0.0012 Score=51.79 Aligned_cols=33 Identities=36% Similarity=0.587 Sum_probs=30.3
Q ss_pred CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
++++|||+|..|.+.|..|.+ |++|+++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 479999999999999999976 999999999874
No 411
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.83 E-value=0.0018 Score=54.04 Aligned_cols=104 Identities=19% Similarity=0.274 Sum_probs=68.1
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHH-------------------------------
Q 022896 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKT------------------------------- 185 (290)
Q Consensus 137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------------------------------- 185 (290)
-..+|+|+|..++.....+....+..++-++...+.. +++.|.+++.+
T Consensus 179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepel-PYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~F 257 (659)
T KOG1346|consen 179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPEL-PYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGF 257 (659)
T ss_pred CceeEEcCCchhhhcccccccCCCCceEEeeccCccC-cccCCCcchhceecCCCChhhheeecccCCccceeEecCCcc
Confidence 3578999998887777777765566666666544332 22222222221
Q ss_pred ------HHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCCCc-hhhccc
Q 022896 186 ------RDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS-DWLKDT 243 (290)
Q Consensus 186 ------~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~-~~l~~~ 243 (290)
.......||.+..+.++..+...+ ..|.++||.+|.||.+++|||..|.. +.++..
T Consensus 258 fvspeDLp~~~nGGvAvl~G~kvvkid~~d--~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A 320 (659)
T KOG1346|consen 258 FVSPEDLPKAVNGGVAVLRGRKVVKIDEED--KKVILNDGTTIGYDKCLIATGVRPKKLQVFEEA 320 (659)
T ss_pred eeChhHCcccccCceEEEeccceEEeeccc--CeEEecCCcEeehhheeeecCcCcccchhhhhc
Confidence 122344688999999996555444 45677899999999999999998853 444443
No 412
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=96.83 E-value=0.0045 Score=51.10 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-----eeE-EcCCCcEEe---ccEEEEccCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-----DTY-LTSTGDTIN---ADCHFLCTGKP 234 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-----~~v-~~~~g~~~~---~d~vv~a~G~~ 234 (290)
.+...+...|+++||++.++.+|+.++++... ..+ ...+++.++ -|.|++..|+.
T Consensus 228 SlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTNgsi 291 (587)
T COG4716 228 SLVLPLITYLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTNGSI 291 (587)
T ss_pred HHHHHHHHHHHHcCCceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEeccee
Confidence 67788999999999999999999999876443 111 356666554 57777766653
No 413
>PLN02985 squalene monooxygenase
Probab=96.78 E-value=0.028 Score=49.97 Aligned_cols=56 Identities=23% Similarity=0.200 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhC-CcEEEeCceEeecccCCCc---eeEEcCCCcE--EeccEEEEccCCCCCc
Q 022896 181 AGDKTRDWLISK-KVDVKLGERVNLDSVSEGS---DTYLTSTGDT--INADCHFLCTGKPVGS 237 (290)
Q Consensus 181 ~~~~~~~~~~~~-gi~~~~~~~v~~i~~~~~~---~~v~~~~g~~--~~~d~vv~a~G~~~~~ 237 (290)
+...+.+.+++. |++++.++ ++++..+++. +.+...+|++ +.+|.+|.|.|..+..
T Consensus 149 l~~~L~~~a~~~~~V~i~~gt-vv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~v 210 (514)
T PLN02985 149 FVQRLRQKASSLPNVRLEEGT-VKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNL 210 (514)
T ss_pred HHHHHHHHHHhCCCeEEEeee-EEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchHH
Confidence 445556666554 78888664 4444433332 3334456653 5689999999987643
No 414
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0041 Score=50.74 Aligned_cols=99 Identities=26% Similarity=0.269 Sum_probs=71.3
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC-----------ccc---cccCChhHHHHHHHHHHhCCcEEEeCc
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG-----------SRL---LEFIGPKAGDKTRDWLISKKVDVKLGE 200 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~-----------~~~---~~~~~~~~~~~~~~~~~~~gi~~~~~~ 200 (290)
..-.|+|+|+|+.|...|-+.+. .+.+..++..+ +.+ ...-.+++...+.+..++..++++...
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaAR--KGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~q 287 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAAR--KGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQ 287 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHh--hcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhh
Confidence 45789999999999888876653 34443332210 011 112356899999999999999998777
Q ss_pred eEeecccC---CCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 201 RVNLDSVS---EGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 201 ~v~~i~~~---~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
..+.++.. ++-..+++.+|-.+++..+|++||.+.
T Consensus 288 ra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW 325 (520)
T COG3634 288 RASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW 325 (520)
T ss_pred hhhcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence 76666553 334888999999999999999999754
No 415
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.73 E-value=0.0098 Score=49.60 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=29.8
Q ss_pred CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
+++.|||.|..||+.|.-|++ ||+|+.+|.++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 579999999999999999987 99999999876
No 416
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.73 E-value=0.0097 Score=55.55 Aligned_cols=35 Identities=31% Similarity=0.542 Sum_probs=29.6
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR 172 (290)
Q Consensus 138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~ 172 (290)
+|+|||+|+.|+-+|..|..+.++.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 68999999999999998887445789999997764
No 417
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.01 Score=49.18 Aligned_cols=90 Identities=19% Similarity=0.124 Sum_probs=66.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc----------CChhHHHHHHHHHHhCCcEEEeCceE-ee
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----------IGPKAGDKTRDWLISKKVDVKLGERV-NL 204 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~gi~~~~~~~v-~~ 204 (290)
..+|-|||+|+.|+-.|..|..+.++.+|+++++.+.+... ..+...+.+.+.++.....+..+.+| +.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~d 99 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGRD 99 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceeccc
Confidence 34899999999999999998876678999999988765331 12345667888888888998888777 22
Q ss_pred cccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 205 DSVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 205 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
+... .-+-.+|.||+|.|...
T Consensus 100 vsl~----------eL~~~ydavvLaYGa~~ 120 (468)
T KOG1800|consen 100 VSLK----------ELTDNYDAVVLAYGADG 120 (468)
T ss_pred ccHH----------HHhhcccEEEEEecCCC
Confidence 2211 11356899999998753
No 418
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.72 E-value=0.0014 Score=54.01 Aligned_cols=96 Identities=17% Similarity=0.220 Sum_probs=63.6
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhhcCCcccccccccccccc--ccceE-Eeeeeeee
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRI-VASPAINI 87 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~v~~~ 87 (290)
-..+.+|||||..||..+.--.+ |.+||++|-.+..++... .+... .+...+ ++..| +.++|..+
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD-------~Eisk----~~qr~L~kQgikF~l~tkv~~a 278 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD-------GEISK----AFQRVLQKQGIKFKLGTKVTSA 278 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC-------HHHHH----HHHHHHHhcCceeEeccEEEEe
Confidence 35899999999999999988877 999999999887664421 11111 111111 23333 35566665
Q ss_pred ecc-----eEEec-----CceEEeccEEEEccCCCCCCCCc
Q 022896 88 TEN-----EVLTA-----EGRRVVYDYLVIATGHKDPVPKT 118 (290)
Q Consensus 88 ~~~-----~v~~~-----~~~~~~~~~vi~a~G~~~~~p~~ 118 (290)
.+. .+.+. ....+++|.+.+|+|-+|...+.
T Consensus 279 ~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GL 319 (506)
T KOG1335|consen 279 TRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGL 319 (506)
T ss_pred eccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCC
Confidence 543 22222 23478999999999999988773
No 419
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.71 E-value=0.0066 Score=52.04 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=29.8
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccc
Q 022896 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 173 (290)
Q Consensus 138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~ 173 (290)
+|+|||+|..|+++|..|+. .+.+|+++++.+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr--~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQ--AGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCcEEEEeccccc
Confidence 68999999999999999986 48999999976553
No 420
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.69 E-value=0.0079 Score=52.21 Aligned_cols=95 Identities=24% Similarity=0.246 Sum_probs=63.0
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccc-----------------------------------------
Q 022896 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE----------------------------------------- 175 (290)
Q Consensus 137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~----------------------------------------- 175 (290)
..|+|||+|..|+|+|...+. .+.++.++........
T Consensus 5 ~DVIVIGgGHAG~EAA~AaAR--mG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~L 82 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAAR--MGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRML 82 (621)
T ss_pred CceEEECCCccchHHHHhhhc--cCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhc
Confidence 579999999999999987774 6877777653222100
Q ss_pred -------------cCCh-hHHHHHHHHHHh-CCcEEEeCceEeecccCCC--ceeEEcCCCcEEeccEEEEccCCC
Q 022896 176 -------------FIGP-KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTGKP 234 (290)
Q Consensus 176 -------------~~~~-~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G~~ 234 (290)
..+. .+...+++.++. .++.++.++ |.++..+++ ...|.+.+|..+.|+.||++||.-
T Consensus 83 N~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 83 NSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred cCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhh-hHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 0011 123334444443 478877654 444555444 388899999999999999999863
No 421
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.69 E-value=0.0051 Score=52.51 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCCC
Q 022896 179 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 179 ~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
..+...+.+.+++ |++++.++.|++++.+++.+.+.+.+|+.+.+|.||+|+|.+.
T Consensus 135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 135 PQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 4678888888888 9999999999999877777888888887799999999999875
No 422
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.64 E-value=0.002 Score=47.54 Aligned_cols=31 Identities=35% Similarity=0.461 Sum_probs=28.8
Q ss_pred cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
+|.|||||..|.++|..|+. |++|+++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999975 99999999986
No 423
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.63 E-value=0.0025 Score=43.25 Aligned_cols=34 Identities=44% Similarity=0.609 Sum_probs=29.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
..++++|||||..|..-+..|.+ |.+|+|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 35899999999999999999976 99999999975
No 424
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.57 E-value=0.0024 Score=56.03 Aligned_cols=33 Identities=27% Similarity=0.258 Sum_probs=29.7
Q ss_pred cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc
Q 022896 15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF 47 (290)
Q Consensus 15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~ 47 (290)
+|+|||.|++|+++|+.|.+ |++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 58999999999999999975 9999999987653
No 425
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.50 E-value=0.039 Score=47.76 Aligned_cols=56 Identities=21% Similarity=0.211 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeE--E-cCCCc--EEeccEEEEccCCCCC
Q 022896 181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTY--L-TSTGD--TINADCHFLCTGKPVG 236 (290)
Q Consensus 181 ~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v--~-~~~g~--~~~~d~vv~a~G~~~~ 236 (290)
+...+.+.+++.|++++.++.++++..+++. ..+ . ..+|+ .+.++.||+|+|-...
T Consensus 143 ~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 143 LIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 5666788889999999999999999887665 233 3 24554 5789999999996544
No 426
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.50 E-value=0.0058 Score=51.16 Aligned_cols=100 Identities=18% Similarity=0.153 Sum_probs=56.9
Q ss_pred eEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcccccc--C--------------------------------------
Q 022896 138 SILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--I-------------------------------------- 177 (290)
Q Consensus 138 ~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~--~-------------------------------------- 177 (290)
.++.||.|+..+.+|..+.+. ...++.++++.+.+... +
T Consensus 4 D~igIG~GP~nLslA~~l~~~-~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~ 82 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEH-GDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLY 82 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHH-H---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HH
T ss_pred eEEEEeeCHHHHHHHHHhhhc-CCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChh
Confidence 578999999999999998875 35788888876654210 0
Q ss_pred -----------ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCc----eeEEcC----CCcEEeccEEEEccCCCCCch
Q 022896 178 -----------GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS----DTYLTS----TGDTINADCHFLCTGKPVGSD 238 (290)
Q Consensus 178 -----------~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~----~~v~~~----~g~~~~~d~vv~a~G~~~~~~ 238 (290)
..++.+.+.-.+++.+-.+.++..|++|+...+. +.|.+. +++++.++.||+++|..|..|
T Consensus 83 ~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP 162 (341)
T PF13434_consen 83 EFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP 162 (341)
T ss_dssp HHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred hhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence 0022222322233345448889999999876553 666652 346899999999999877643
No 427
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.48 E-value=0.0042 Score=47.91 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=29.9
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
..+|+|||||.+|..-+..|.+ |.+|+|++++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 5799999999999999999976 99999999864
No 428
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.41 E-value=0.023 Score=49.75 Aligned_cols=83 Identities=22% Similarity=0.254 Sum_probs=59.2
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeE
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY 214 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v 214 (290)
.+++++|+|+|..|..+|..|.+ .+.+|+++++.... .+ ....+.+.+.|++++.+....
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~--~G~~V~~~d~~~~~------~~-~~~~~~l~~~~~~~~~~~~~~----------- 63 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKK--LGAKVILTDEKEED------QL-KEALEELGELGIELVLGEYPE----------- 63 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCchH------HH-HHHHHHHHhcCCEEEeCCcch-----------
Confidence 46899999999999999999997 48999998876421 22 333345667788876655432
Q ss_pred EcCCCcEEeccEEEEccCCCCCchhhc
Q 022896 215 LTSTGDTINADCHFLCTGKPVGSDWLK 241 (290)
Q Consensus 215 ~~~~g~~~~~d~vv~a~G~~~~~~~l~ 241 (290)
...-.+|.||.++|..++.+.+.
T Consensus 64 ----~~~~~~d~vv~~~g~~~~~~~~~ 86 (450)
T PRK14106 64 ----EFLEGVDLVVVSPGVPLDSPPVV 86 (450)
T ss_pred ----hHhhcCCEEEECCCCCCCCHHHH
Confidence 01125899999999888766554
No 429
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.0036 Score=52.05 Aligned_cols=46 Identities=33% Similarity=0.527 Sum_probs=40.5
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhhhh
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM 57 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~~~ 57 (290)
..+|+||||-|..=-..|....+ |.+|+=+|+++++|+.|..+...
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 46999999999998888888877 99999999999999999876543
No 430
>PRK07121 hypothetical protein; Validated
Probab=96.36 E-value=0.082 Score=46.87 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCC-c-eeEEc-CCCc--EEec-cEEEEccCCC-CCchhhc
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG-S-DTYLT-STGD--TINA-DCHFLCTGKP-VGSDWLK 241 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~-~-~~v~~-~~g~--~~~~-d~vv~a~G~~-~~~~~l~ 241 (290)
.+...+.+.+++.|++++.++.++++..+++ . ..+.. .+++ .+.+ +.||+|+|-. .|.+++.
T Consensus 178 ~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 178 MLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 4666777888889999999999999876543 3 33332 2333 5778 9999999953 3444443
No 431
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.34 E-value=0.0066 Score=44.63 Aligned_cols=33 Identities=42% Similarity=0.544 Sum_probs=28.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK 44 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~ 44 (290)
...+|+|||||..|..-|..|.+ |++|+|+++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 46899999999999999999864 9999999643
No 432
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.32 E-value=0.019 Score=48.56 Aligned_cols=56 Identities=21% Similarity=0.124 Sum_probs=45.5
Q ss_pred ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCC-cEEeccEEEEccCCCC
Q 022896 178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG-DTINADCHFLCTGKPV 235 (290)
Q Consensus 178 ~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g-~~~~~d~vv~a~G~~~ 235 (290)
...+.+.+...+++.||++++++.|+.+ ++++..+.+.++ +.+.+|.||+|+|-.+
T Consensus 85 A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 85 AAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 3478889999999999999999999988 344566665443 4699999999999865
No 433
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.27 E-value=0.069 Score=48.32 Aligned_cols=54 Identities=15% Similarity=0.014 Sum_probs=36.5
Q ss_pred HHHHHHHHHHh-CCcEEEeCceEeecccCCCcee----EEcCCCc--EEeccEEEEccCCC
Q 022896 181 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDT----YLTSTGD--TINADCHFLCTGKP 234 (290)
Q Consensus 181 ~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~~----v~~~~g~--~~~~d~vv~a~G~~ 234 (290)
+...+.+.+.+ .+|+++.++.++++..+++.+. +...+|+ .+.++.||+|+|-.
T Consensus 135 i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 195 (582)
T PRK09231 135 MLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGA 195 (582)
T ss_pred HHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCC
Confidence 33444444444 4799999999988876555432 2345664 68899999999853
No 434
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.27 E-value=0.0048 Score=46.56 Aligned_cols=32 Identities=34% Similarity=0.428 Sum_probs=27.0
Q ss_pred cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
+|.|||+|..|...|..+.. |++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 48999999999999999975 999999999774
No 435
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.22 E-value=0.087 Score=47.63 Aligned_cols=54 Identities=20% Similarity=0.022 Sum_probs=36.3
Q ss_pred HHHHHHHHHHh-CCcEEEeCceEeecccCCCce-e---EEcCCCc--EEeccEEEEccCCC
Q 022896 181 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-T---YLTSTGD--TINADCHFLCTGKP 234 (290)
Q Consensus 181 ~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~~~-~---v~~~~g~--~~~~d~vv~a~G~~ 234 (290)
+...+.+.+.+ .+|+++.++.++++..+++.+ . +...+|+ .+.++.||+|+|-.
T Consensus 134 i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (580)
T TIGR01176 134 MLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGA 194 (580)
T ss_pred HHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCC
Confidence 44445555544 478999999888877655542 2 2334664 67899999999853
No 436
>PRK08275 putative oxidoreductase; Provisional
Probab=96.17 E-value=0.12 Score=46.61 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccC-CCc-eeEE---cCCCc--EEeccEEEEccCCCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGS-DTYL---TSTGD--TINADCHFLCTGKPV 235 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~-~~~-~~v~---~~~g~--~~~~d~vv~a~G~~~ 235 (290)
.+...+.+.+++.|++++.++.++++..+ ++. ..+. ..+|+ .+.++.||+|||-..
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 46677788888899999999999998765 333 2232 34564 578999999999754
No 437
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.12 E-value=0.018 Score=48.14 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=48.1
Q ss_pred ChhHHHHHHHHHHhCCcEEEeCceEeecccCCCce-eEEcCCCcEEeccEEEEccCCCC
Q 022896 178 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPV 235 (290)
Q Consensus 178 ~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~ 235 (290)
...+...+.+.+++.|++++.+++|+.++.+++.+ .+.+.+| ++.+|.||+|+|.+.
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWA 193 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence 44788899999999999999999999998766653 4666666 799999999999875
No 438
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.09 E-value=0.0078 Score=49.89 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=30.2
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
.++|+|||+|..|...|..|++ |++|+++.|+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4689999999999999999986 99999999965
No 439
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.09 E-value=0.0093 Score=45.89 Aligned_cols=33 Identities=39% Similarity=0.627 Sum_probs=29.4
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK 44 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~ 44 (290)
..++++|||||-.|...|..|.+ |++|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 35899999999999999999865 9999999874
No 440
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.09 E-value=0.0076 Score=52.71 Aligned_cols=33 Identities=48% Similarity=0.675 Sum_probs=30.4
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
.++++|||+|.+|+++|..|.+ |++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5889999999999999999975 99999999975
No 441
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.09 E-value=0.065 Score=46.20 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHh-CCcEEEeCceEeecccCCC-ce-eEEc--CCC--cEEeccEEEEccCC
Q 022896 180 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEG-SD-TYLT--STG--DTINADCHFLCTGK 233 (290)
Q Consensus 180 ~~~~~~~~~~~~-~gi~~~~~~~v~~i~~~~~-~~-~v~~--~~g--~~~~~d~vv~a~G~ 233 (290)
.+...+.+..++ .+|+++.++.+.++..+++ .+ .+.. .++ .++.++.||+|||-
T Consensus 134 ~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 134 EIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 344445566655 6999999988887877777 33 3332 323 46789999999984
No 442
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.08 E-value=0.033 Score=46.72 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=29.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCcc
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSR 172 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~ 172 (290)
..+|+|+|||..|+-.|..+.. .+.++.+++.++.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r--~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHR--KGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHH--cCCeEEEEeeccc
Confidence 3589999999999999999986 6889988886544
No 443
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.08 E-value=0.0041 Score=47.14 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=26.0
Q ss_pred CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
++|.|||.|..||.+|..|+. |++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 479999999999999999986 999999999875
No 444
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.05 E-value=0.13 Score=46.86 Aligned_cols=54 Identities=9% Similarity=-0.070 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCC-cEEEeCceEeecccCCCc-eeE---EcCCCc--EEeccEEEEccCCC
Q 022896 181 AGDKTRDWLISKK-VDVKLGERVNLDSVSEGS-DTY---LTSTGD--TINADCHFLCTGKP 234 (290)
Q Consensus 181 ~~~~~~~~~~~~g-i~~~~~~~v~~i~~~~~~-~~v---~~~~g~--~~~~d~vv~a~G~~ 234 (290)
+...+.+.+++.+ ++++.++.++++..+++. ..+ ...+|+ .+.++.||+|+|-.
T Consensus 134 ~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (608)
T PRK06854 134 YKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGA 194 (608)
T ss_pred HHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCch
Confidence 3444555666665 999999999888655543 222 234554 68899999999953
No 445
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.96 E-value=0.0084 Score=48.91 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=30.5
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
..+|.|||+|.-|...|..|.. |++|+++|+++.
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 3589999999999999999875 999999999874
No 446
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.94 E-value=0.11 Score=47.56 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEc---CCCc--EEeccEEEEccCCC
Q 022896 183 DKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLT---STGD--TINADCHFLCTGKP 234 (290)
Q Consensus 183 ~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~---~~g~--~~~~d~vv~a~G~~ 234 (290)
+.+.+.+++.||+++.++.++++..+++. ..+.. .+|+ .+.++.||+|||--
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~ 231 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGY 231 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCc
Confidence 44555677889999999999988765544 33332 2454 58899999999863
No 447
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.90 E-value=0.0093 Score=43.57 Aligned_cols=30 Identities=40% Similarity=0.625 Sum_probs=27.8
Q ss_pred EEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 16 VVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 16 vvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
|+|+|+|..|...|++|++ |++|+++.+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999976 99999999965
No 448
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.89 E-value=0.027 Score=47.10 Aligned_cols=99 Identities=18% Similarity=0.125 Sum_probs=64.9
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeEE-
Q 022896 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL- 215 (290)
Q Consensus 137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~- 215 (290)
++|+|+|+|+.|+++|..+.. ....++.++.|.. .=++.+.+.+.+.+-.+.....-.....-.+++.+.
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~-~~~~~vGi~~R~S--------~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~ 72 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKK-HGNCRVGIVGRES--------VRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDH 72 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHh-ccCceeeeecCcc--------hhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhH
Confidence 589999999999999999987 3567899888844 445667777777655555444333333334444332
Q ss_pred -cCCCcE--EeccEEEEccCCCCCchhhcccc
Q 022896 216 -TSTGDT--INADCHFLCTGKPVGSDWLKDTI 244 (290)
Q Consensus 216 -~~~g~~--~~~d~vv~a~G~~~~~~~l~~~~ 244 (290)
..+=+. =+.|.+|+|+......+.|++..
T Consensus 73 ~~~~~~~i~g~WdtlILavtaDAY~~VL~ql~ 104 (429)
T PF10100_consen 73 VFQDYEEIEGEWDTLILAVTADAYLDVLQQLP 104 (429)
T ss_pred hhcCHHHhcccccEEEEEechHHHHHHHHhcC
Confidence 111122 24789999998877666666543
No 449
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.82 E-value=0.15 Score=46.01 Aligned_cols=54 Identities=11% Similarity=-0.139 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEEc---CCCc--EEeccEEEEccCC
Q 022896 180 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLT---STGD--TINADCHFLCTGK 233 (290)
Q Consensus 180 ~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~~---~~g~--~~~~d~vv~a~G~ 233 (290)
.+...+.+.+++.||+++.++.++++..+++. ..+.. .+|+ .+.++.||+|||-
T Consensus 137 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 137 ALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 35556667777789999999999888776554 33322 2443 5789999999984
No 450
>PRK04148 hypothetical protein; Provisional
Probab=95.80 E-value=0.0079 Score=42.52 Aligned_cols=33 Identities=42% Similarity=0.416 Sum_probs=29.7
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
..++++||.| .|.+.|..|++ |++|+.+|-++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 4689999999 89999999976 999999999875
No 451
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.79 E-value=0.011 Score=44.06 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=28.6
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
...+++|+|+|.+|..||..|.. |++++++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 35899999999999999999986 99999999854
No 452
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.77 E-value=0.009 Score=48.49 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=30.4
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
..-|-|||||.||-.|||++++ |.+|.++|-++.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 4678999999999999999975 999999998764
No 453
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.76 E-value=0.012 Score=48.50 Aligned_cols=33 Identities=30% Similarity=0.284 Sum_probs=30.0
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
.++++|||+|..|...|.+|.+ |.+|+++.|..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 3679999999999999999987 89999999964
No 454
>PTZ00367 squalene epoxidase; Provisional
Probab=95.76 E-value=0.14 Score=46.03 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=28.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCc
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGS 171 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~ 171 (290)
..+|+|||+|..|+-+|..|.+ .+.+|+++++.+
T Consensus 33 ~~dViIVGaGiaGlalA~aLar--~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSK--QGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHh--cCCEEEEEcccc
Confidence 3579999999999999999986 488999998764
No 455
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.69 E-value=0.011 Score=48.80 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=29.8
Q ss_pred CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
++|.|||+|..|.+.|..|.+ |++|+++|+++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 479999999999999999975 999999999864
No 456
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=95.63 E-value=0.12 Score=43.37 Aligned_cols=62 Identities=11% Similarity=-0.032 Sum_probs=39.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecc
Q 022896 136 ARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS 206 (290)
Q Consensus 136 ~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~ 206 (290)
+.++.++.|...+.|++... -..+++....+. -..+..+.+.+.+...-+.++....+..++
T Consensus 138 ~~~~~~lsGP~~A~Eva~~~-----pt~~~ia~~~~~----~~~~~a~~~~~lf~~~~frv~~s~Dv~GvE 199 (342)
T TIGR03376 138 GIPCGVLSGANLANEVAKEK-----FSETTVGYRDPA----DFDVDARVLKALFHRPYFRVNVVDDVAGVE 199 (342)
T ss_pred CCCeEEeeCcchHHHHHcCC-----CceEEEEeCCCc----chHHHHHHHHHHhCCCCEEEEEcCCcccch
Confidence 45777777777666666433 234454444310 002677888888888888888887776665
No 457
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.63 E-value=0.11 Score=42.78 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCc--EEeccEEEEccCCCCCchhhcccccccccCCCCcEEec
Q 022896 181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVD 258 (290)
Q Consensus 181 ~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~~l~~~~~~~~~~~~g~~~v~ 258 (290)
+....+..|...+++++.+.-- -.+++.+.+...+|+ .+.+..+++|+|-+|..|-++...+. .+.||++.+.
T Consensus 112 LngIY~~~L~k~~V~~i~G~a~---f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~g--idSDgff~Le 186 (478)
T KOG0405|consen 112 LNGIYKRNLAKAAVKLIEGRAR---FVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELG--IDSDGFFDLE 186 (478)
T ss_pred HHHHHHhhccccceeEEeeeEE---EcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhhc--cccccccchh
Confidence 3444566667778888877532 245666778777774 47899999999999887766655553 4667776665
Q ss_pred C
Q 022896 259 E 259 (290)
Q Consensus 259 ~ 259 (290)
+
T Consensus 187 e 187 (478)
T KOG0405|consen 187 E 187 (478)
T ss_pred h
Confidence 5
No 458
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.61 E-value=0.02 Score=40.94 Aligned_cols=34 Identities=41% Similarity=0.586 Sum_probs=30.0
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCc-EEEEcCCC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SAD-VTLIDPKE 45 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~-v~vie~~~ 45 (290)
...+++|||+|-+|-+++++|.. |.+ ++|+.|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 46899999999999999999975 876 99999864
No 459
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.57 E-value=0.016 Score=49.05 Aligned_cols=33 Identities=39% Similarity=0.503 Sum_probs=30.0
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
..+++|||+|.+|+.+|..|+. |.+|+++|++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4779999999999999999986 99999999864
No 460
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.56 E-value=0.064 Score=46.02 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=24.9
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEe
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVH 168 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~ 168 (290)
..-.|+|||+|..|+|.|...+. .+.+..++.
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR--~Ga~TlLlT 58 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAAR--LGARTLLLT 58 (679)
T ss_pred CcccEEEECCCccchHHHHHHHh--cCCceEEee
Confidence 34589999999999999987764 576666665
No 461
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.55 E-value=0.012 Score=51.66 Aligned_cols=35 Identities=31% Similarity=0.352 Sum_probs=31.2
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
...+|+|+|+|++|+.++..++. |.+|+++|.++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 36899999999999999999976 999999998764
No 462
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.52 E-value=0.074 Score=41.06 Aligned_cols=79 Identities=11% Similarity=0.053 Sum_probs=51.2
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccCChhHHHHHHHHHHhCCcEEEeCceEeecccCCCceeE
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY 214 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v 214 (290)
.+++++|+|+|.+|..-+..|.+ .+.+|+++.+... ..+.+..++.+++++...- .
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~~~----------~~l~~l~~~~~i~~~~~~~------~------ 63 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLK--AGAQLRVIAEELE----------SELTLLAEQGGITWLARCF------D------ 63 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCCCC----------HHHHHHHHcCCEEEEeCCC------C------
Confidence 47899999999999999998886 5889999876432 3333434444555543221 0
Q ss_pred EcCCCcEEeccEEEEccCCC-CCchhh
Q 022896 215 LTSTGDTINADCHFLCTGKP-VGSDWL 240 (290)
Q Consensus 215 ~~~~g~~~~~d~vv~a~G~~-~~~~~l 240 (290)
.+..-.++.||.|||-. .|.++.
T Consensus 64 ---~~dl~~~~lVi~at~d~~ln~~i~ 87 (205)
T TIGR01470 64 ---ADILEGAFLVIAATDDEELNRRVA 87 (205)
T ss_pred ---HHHhCCcEEEEECCCCHHHHHHHH
Confidence 01123489999999875 444333
No 463
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.51 E-value=0.0084 Score=51.81 Aligned_cols=54 Identities=19% Similarity=0.081 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhCCcEEEeCceEeecccCCCceeEEcCCCcEEeccEEEEccCCC
Q 022896 181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP 234 (290)
Q Consensus 181 ~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 234 (290)
+...+.......|.+++.+++|++|+.+++++.+.+.+|+++.||.||+|++..
T Consensus 211 ~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 211 LSLALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPS 264 (450)
T ss_dssp THHHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HH
T ss_pred hhHHHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchh
Confidence 344445555556779999999999999999999999999999999999998754
No 464
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.47 E-value=0.017 Score=48.55 Aligned_cols=33 Identities=36% Similarity=0.537 Sum_probs=29.5
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
+++|.|||+|..|.+.|..|.+ |++|+++++++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 3679999999999999999976 99999999853
No 465
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.46 E-value=0.024 Score=42.09 Aligned_cols=33 Identities=36% Similarity=0.429 Sum_probs=28.9
Q ss_pred CCCcEEEEcCCh-HHHHHHHHhcc-CCcEEEEcCC
Q 022896 12 KNKRVVVIGGGV-AGSLVAKSLQF-SADVTLIDPK 44 (290)
Q Consensus 12 ~~~dvvIIGaG~-aGl~~A~~L~~-g~~v~vie~~ 44 (290)
..++++|||+|- +|..+|.+|.+ |.+|+++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 469999999995 79999999975 8899999985
No 466
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.44 E-value=0.21 Score=45.42 Aligned_cols=42 Identities=29% Similarity=0.255 Sum_probs=30.0
Q ss_pred CCcEEEeCceEeecccCCC-c-eeEEc---CCCc--EEeccEEEEccCC
Q 022896 192 KKVDVKLGERVNLDSVSEG-S-DTYLT---STGD--TINADCHFLCTGK 233 (290)
Q Consensus 192 ~gi~~~~~~~v~~i~~~~~-~-~~v~~---~~g~--~~~~d~vv~a~G~ 233 (290)
.||+++.++.++++..+++ . ..+.. .+|+ .+.++.||+|||-
T Consensus 146 ~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 146 GLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred CCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 4899999999988866443 2 33332 2453 5789999999985
No 467
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.35 E-value=0.019 Score=47.31 Aligned_cols=31 Identities=29% Similarity=0.606 Sum_probs=28.4
Q ss_pred cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
+++|||+|..|...|..|.+ |++|+++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999976 89999999854
No 468
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.33 E-value=0.021 Score=46.86 Aligned_cols=34 Identities=35% Similarity=0.364 Sum_probs=30.4
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
..+|.|||+|..|.+.|..|.+ |++|+++|+++.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 3679999999999999999975 999999998764
No 469
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.32 E-value=0.019 Score=47.02 Aligned_cols=33 Identities=33% Similarity=0.518 Sum_probs=29.7
Q ss_pred CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
.+|.|||+|..|.+.|..|.+ |++|+++|+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 469999999999999999975 999999999864
No 470
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.31 E-value=0.023 Score=46.98 Aligned_cols=34 Identities=32% Similarity=0.282 Sum_probs=30.3
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
..+|.|||+|..|...|..+.. |++|+++|+.+.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4679999999999999999875 999999999764
No 471
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.31 E-value=0.02 Score=46.86 Aligned_cols=33 Identities=42% Similarity=0.541 Sum_probs=29.8
Q ss_pred CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
.+|.|||+|..|.+.|..|++ |++|+++|+++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 579999999999999999975 999999998763
No 472
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.26 E-value=0.018 Score=46.07 Aligned_cols=35 Identities=37% Similarity=0.432 Sum_probs=28.2
Q ss_pred CCCcEEEEcCChHHHHHHHHhc--------cCCcEEEEcCCCC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQ--------FSADVTLIDPKEY 46 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~--------~g~~v~vie~~~~ 46 (290)
+..+++|||+|..||+.|..+. +..+|++++.+..
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~ 44 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT 44 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence 3589999999999999996653 2478999987664
No 473
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.23 E-value=0.024 Score=48.42 Aligned_cols=35 Identities=31% Similarity=0.279 Sum_probs=30.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
....|+|+|+|+.|+.+|..|+. |.+|+++|.++.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 35789999999999999999975 999999998753
No 474
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.19 E-value=0.13 Score=42.29 Aligned_cols=34 Identities=32% Similarity=0.434 Sum_probs=30.6
Q ss_pred CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCCc
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF 47 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~~ 47 (290)
.+|.|||+|.=|-+.|..|++ |++|.+.-+++..
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~ 36 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEI 36 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHH
Confidence 579999999999999999986 8999999998753
No 475
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.19 E-value=0.016 Score=41.37 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=26.6
Q ss_pred EEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 16 VVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 16 vvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
++|+|+|+.+.++|..++. |++|+++|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 5899999999999999987 999999999864
No 476
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.17 E-value=0.024 Score=46.78 Aligned_cols=29 Identities=31% Similarity=0.497 Sum_probs=27.4
Q ss_pred cEEEEcCChHHHHHHHHhcc-CCcEEEEcC
Q 022896 15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDP 43 (290)
Q Consensus 15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~ 43 (290)
+|+|||+|..|...|..|.+ |++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 69999999999999999976 999999998
No 477
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.07 E-value=0.02 Score=46.08 Aligned_cols=33 Identities=45% Similarity=0.585 Sum_probs=30.1
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
.-+|+|||||.+|..+|+-+.- |.+|+++|.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 5789999999999999999865 99999999984
No 478
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.06 E-value=0.064 Score=33.16 Aligned_cols=32 Identities=34% Similarity=0.441 Sum_probs=27.7
Q ss_pred EEcCchhHHHHHHHHhhhCCCCeEEEEecCcccc
Q 022896 141 IVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL 174 (290)
Q Consensus 141 iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~ 174 (290)
|||+|.+|+.+|..|.+. +.+|+++++.+.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA--GYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHT--TSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHC--CCcEEEEecCcccC
Confidence 799999999999999974 88999999988764
No 479
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.01 E-value=0.11 Score=40.00 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=28.8
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEec
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHK 169 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~ 169 (290)
.+++++|+|+|..|...+..|.+ .+.+|+++.+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~--~ga~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLK--YGAHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEcC
Confidence 57999999999999999998887 3789999874
No 480
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.96 E-value=0.033 Score=46.17 Aligned_cols=34 Identities=32% Similarity=0.389 Sum_probs=30.2
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
..+|.|||+|..|.+.|..|.+ |++|+++|+++.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 4679999999999999999975 999999998763
No 481
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.94 E-value=0.031 Score=46.13 Aligned_cols=33 Identities=27% Similarity=0.551 Sum_probs=28.6
Q ss_pred CcEEEEcCChHHHHHHHHhcc-C--CcEEEEcCCCC
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEY 46 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~-g--~~v~vie~~~~ 46 (290)
++|.|||+|..|.++|+.|.. | .++.++|++..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 369999999999999999964 6 58999999764
No 482
>PRK08071 L-aspartate oxidase; Provisional
Probab=94.94 E-value=0.3 Score=43.55 Aligned_cols=54 Identities=24% Similarity=0.108 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCcEEEeCceEeecccCCCc-eeEE--cCCCc--EEeccEEEEccCCCC
Q 022896 181 AGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYL--TSTGD--TINADCHFLCTGKPV 235 (290)
Q Consensus 181 ~~~~~~~~~~~~gi~~~~~~~v~~i~~~~~~-~~v~--~~~g~--~~~~d~vv~a~G~~~ 235 (290)
+...+.+.++ .||+++.++.++++..+++. ..+. ..+|+ .+.++.||+|+|-..
T Consensus 132 i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 132 LLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 4444555454 58999999988877655443 2232 23443 578999999998644
No 483
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=94.86 E-value=0.12 Score=43.51 Aligned_cols=63 Identities=27% Similarity=0.431 Sum_probs=47.1
Q ss_pred CeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecCccccccC-----------------------C-----------hhHH
Q 022896 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-----------------------G-----------PKAG 182 (290)
Q Consensus 137 ~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-----------------------~-----------~~~~ 182 (290)
..|+|||+|++|+.+|..+.+ .+.+|.++++.+.+.+.+ + .-..
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~--~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAK--AGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhh--cCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 579999999999999999986 599999999877654311 0 0112
Q ss_pred HHHHHHHHhCCcEEEeCce
Q 022896 183 DKTRDWLISKKVDVKLGER 201 (290)
Q Consensus 183 ~~~~~~~~~~gi~~~~~~~ 201 (290)
+.+.+++++.||+++..+.
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~ 100 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDL 100 (408)
T ss_pred HHHHHHHHhcCCeeEEccC
Confidence 3467788899999886553
No 484
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.86 E-value=0.03 Score=45.93 Aligned_cols=33 Identities=36% Similarity=0.500 Sum_probs=29.8
Q ss_pred CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
.+|.|||+|..|.+.|..|++ |++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 579999999999999999975 999999999764
No 485
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.80 E-value=0.04 Score=48.16 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=29.8
Q ss_pred CCcEEEEcCChHHHHHHHHhccCCcEEEEcCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE 45 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~ 45 (290)
.++|+|+|.|.+|.++|..|.+|.+|++.|.+.
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~g~~v~v~D~~~ 38 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQNKYDVIVYDDLK 38 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhCCCEEEEECCCC
Confidence 368999999999999999998899999999653
No 486
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.78 E-value=0.038 Score=47.75 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=27.7
Q ss_pred hHHHHHHHHhcc-CCcEEEEcCCCCcccchhhhh
Q 022896 23 VAGSLVAKSLQF-SADVTLIDPKEYFEITWASLR 55 (290)
Q Consensus 23 ~aGl~~A~~L~~-g~~v~vie~~~~~~~~~~~~~ 55 (290)
+|||+||++|++ |.+|+|+|+++.+|+......
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~ 34 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFR 34 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEec
Confidence 589999999976 999999999999997655443
No 487
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.72 E-value=0.047 Score=41.94 Aligned_cols=34 Identities=29% Similarity=0.296 Sum_probs=30.6
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE 45 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~ 45 (290)
...+|+|||+|-.|..+|..|.+ |. +++++|.+.
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 46899999999999999999987 87 699999984
No 488
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.70 E-value=0.039 Score=48.80 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=29.2
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
..+|+|+|.|.+|++++..|+. |.+|++.|.++
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4689999999999999999865 99999999653
No 489
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.69 E-value=0.042 Score=48.04 Aligned_cols=33 Identities=42% Similarity=0.485 Sum_probs=29.7
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
.+.++|+|+|.+|+++|..|++ |++|++.|++.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4679999999999999999975 99999999765
No 490
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.69 E-value=0.044 Score=44.96 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=30.9
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
...+++|||.|.+|..+|..|++ |.+|++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35899999999999999999976 99999999974
No 491
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.67 E-value=0.039 Score=45.00 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=29.7
Q ss_pred CcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 14 ~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
.+|.|||+|..|.+.|..|.+ |++|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 579999999999999999975 999999998764
No 492
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.66 E-value=0.032 Score=38.61 Aligned_cols=31 Identities=39% Similarity=0.506 Sum_probs=26.9
Q ss_pred EEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 16 VVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 16 vvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
++|+|.|..|..+|..|.+ +.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 6899999999999999987 559999999764
No 493
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.64 E-value=0.042 Score=48.20 Aligned_cols=33 Identities=42% Similarity=0.469 Sum_probs=29.9
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
.++++|+|.|.+|+++|..|++ |++|++.|+++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 4689999999999999999975 99999999865
No 494
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.56 E-value=0.37 Score=32.55 Aligned_cols=34 Identities=29% Similarity=0.518 Sum_probs=29.6
Q ss_pred cCCeEEEEcCchhHHHHHHHHhhhCCCCeEEEEecC
Q 022896 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKG 170 (290)
Q Consensus 135 ~~~~v~iiG~g~~~~~~a~~l~~~~~~~~v~~~~~~ 170 (290)
.+++++|+|+|..|..-+..|.+ .+.+++++.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~--~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLE--AGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCC--CTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEECCc
Confidence 57999999999999999999886 58999999877
No 495
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.53 E-value=0.053 Score=45.32 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=30.2
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
.++|.|||+|.-|.+.|..|.+ |++|+++++++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~ 38 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE 38 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 3579999999999999999975 999999999653
No 496
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.53 E-value=0.051 Score=38.85 Aligned_cols=34 Identities=47% Similarity=0.642 Sum_probs=29.6
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CC-cEEEEcCCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKEY 46 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~-~v~vie~~~~ 46 (290)
+.+|+|||+|-.|..+|..|.+ |. +++++|.+..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 4789999999999999999987 85 7999999764
No 497
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.51 E-value=0.042 Score=46.88 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=29.1
Q ss_pred cEEEEcCChHHHHHHHHhccCCcEEEEcCCCC
Q 022896 15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY 46 (290)
Q Consensus 15 dvvIIGaG~aGl~~A~~L~~g~~v~vie~~~~ 46 (290)
+|.|||.|..|+..|..++.|++|+++|+++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQNHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhCCcEEEEECCHH
Confidence 68999999999999988778999999999874
No 498
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.49 E-value=0.053 Score=46.27 Aligned_cols=35 Identities=29% Similarity=0.264 Sum_probs=31.2
Q ss_pred CCCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 12 ~~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
....|+|||.|+.|..+|..|+. |.+|+++|.++.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 36899999999999999999986 999999998663
No 499
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.46 E-value=0.05 Score=44.71 Aligned_cols=34 Identities=35% Similarity=0.401 Sum_probs=30.1
Q ss_pred CCcEEEEcCChHHHHHHHHhcc-CCcEEEEcCCCC
Q 022896 13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (290)
Q Consensus 13 ~~dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~~ 46 (290)
..+|.|||+|..|...|..|.. |++|+++|+++.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 3579999999999999999975 999999998763
No 500
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.46 E-value=0.04 Score=45.99 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=28.5
Q ss_pred cEEEEcCChHHHHHHHHhcc-CCcEEEEcCCC
Q 022896 15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE 45 (290)
Q Consensus 15 dvvIIGaG~aGl~~A~~L~~-g~~v~vie~~~ 45 (290)
++.|||+|..|.+.|..|.+ |++|+++++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999976 89999999965
Done!