BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022897
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 162 GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLG-LANLTNLKELDLRGCGITTSQGLAD 220
G T++G+ L L L+L N+ +T L L NLT + EL+L G + +A
Sbjct: 52 GVTTIEGVQYLNNLIGLELKDNQ------ITDLAPLKNLTKITELELSGNPLKNVSAIAG 105
Query: 221 LPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKI 273
L ++KTLDL IT + LA L NL+ L L N I GL +L L I
Sbjct: 106 LQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 158
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 197 ANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNI 256
A+L + L G G+TT +G+ L NL L+L+D IT + L L + L+LS N +
Sbjct: 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL 97
Query: 257 NGSLESQGLADLPNLKILDLRDCGMTTI 284
+A L ++K LDL +T +
Sbjct: 98 K---NVSAIAGLQSIKTLDLTSTQITDV 122
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 166 MQGLANLRYLQVLDLSWNENITSGSLTRL-GLANLTNLKELDLRGCGITTSQGLADLPNL 224
+ +A L+ ++ LDL TS +T + LA L+NL+ L L IT LA L NL
Sbjct: 100 VSAIAGLQSIKTLDL------TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNL 153
Query: 225 KTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD 278
+ L + + ++ + LA L L L N I+ + LA LPNL + L++
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS---DISPLASLPNLIEVHLKN 204
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 166 MQGLANLRYL-----QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLAD 220
+ GL NL+YL QV DL+ LANL+ L L I+ LA
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLT-------------PLANLSKLTTLKADDNKISDISPLAS 193
Query: 221 LPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNI 256
LPNL + L++ I+ + LA NL + L+ I
Sbjct: 194 LPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 199 LTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNING 258
L N ++ +T + ADL + TL G+TTI+G+ L NL L+L N I
Sbjct: 18 LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI-- 75
Query: 259 SLESQGLADLPNL-KILDLRDCG 280
LA L NL KI +L G
Sbjct: 76 ----TDLAPLKNLTKITELELSG 94
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 188 SGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLE 247
+G T G+ L NL L+L+ IT L +L + L+L + + +A L++++
Sbjct: 51 TGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIK 110
Query: 248 ALDLSWNNINGSLESQGLADLPNLKILDL 276
LDL+ I + LA L NL++L L
Sbjct: 111 TLDLTSTQIT---DVTPLAGLSNLQVLYL 136
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 162 GSGTMQGLANLRYLQVLDLSWNENITSGSLTRL-GLANLTNLKELDLRGCGITTSQGLAD 220
G T++G+ L L L+L N+ +T L L NLT + EL+L G + +A
Sbjct: 58 GVTTIEGIQYLNNLIGLELKDNQ------ITDLTPLKNLTKITELELSGNPLKNVSAIAG 111
Query: 221 LPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKI 273
L ++KTLDL IT + LA L NL+ L L N I GL +L L I
Sbjct: 112 LQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 164
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 166 MQGLANLRYLQVLDLSWN--ENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPN 223
+ L NL + L+LS N +N+++ +A L ++K LDL IT LA L N
Sbjct: 84 LTPLKNLTKITELELSGNPLKNVSA-------IAGLQSIKTLDLTSTQITDVTPLAGLSN 136
Query: 224 LKTLDLRDCGITTIQGLAKLKNLEALDLSWNNIN 257
L+ L L IT I LA L NL+ L + N +N
Sbjct: 137 LQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVN 170
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 166 MQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLK 225
+ GL NL+YL + + N+ LT L ANL+ L L I+ LA LPNL
Sbjct: 153 LAGLTNLQYLSIGNNQVND------LTPL--ANLSKLTTLRADDNKISDISPLASLPNLI 204
Query: 226 TLDLRDCGITTIQGLAKLKNL 246
+ L+D I+ + LA L NL
Sbjct: 205 EVHLKDNQISDVSPLANLSNL 225
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 197 ANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNI 256
A+L + L G+TT +G+ L NL L+L+D IT + L L + L+LS N +
Sbjct: 44 ADLDGIATLSAFNTGVTTIEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPL 103
Query: 257 NGSLESQGLADLPNLKILDLRDCGMTTI 284
+A L ++K LDL +T +
Sbjct: 104 KN---VSAIAGLQSIKTLDLTSTQITDV 128
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 166 MQGLANLRYLQVLDLSWNENITSGSLTRL-GLANLTNLKELDLRGCGITTSQGLADLPNL 224
+ +A L+ ++ LDL TS +T + LA L+NL+ L L IT LA L NL
Sbjct: 106 VSAIAGLQSIKTLDL------TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNL 159
Query: 225 KTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD 278
+ L + + + + LA L L L N I+ + LA LPNL + L+D
Sbjct: 160 QYLSIGNNQVNDLTPLANLSKLTTLRADDNKIS---DISPLASLPNLIEVHLKD 210
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 210 CGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNI 256
+T + ADL + TL + G+TTI+G+ L NL L+L N I
Sbjct: 35 SNVTDAVTQADLDGIATLSAFNTGVTTIEGIQYLNNLIGLELKDNQI 81
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 188 SGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLE 247
+G T G+ L NL L+L+ IT L +L + L+L + + +A L++++
Sbjct: 57 TGVTTIEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIK 116
Query: 248 ALDLSWNNINGSLESQGLADLPNLKIL 274
LDL+ I + LA L NL++L
Sbjct: 117 TLDLTSTQIT---DVTPLAGLSNLQVL 140
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 102/264 (38%), Gaps = 57/264 (21%)
Query: 41 EDDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQS 100
+D+ +PS + + G+ + + + LS T+T + T SL + L +
Sbjct: 337 DDNNIPSTKSNTFTGL----VSLKYLSLSKTFTSLQTLTNETFVSLAHSPLL-------T 385
Query: 101 LNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXX 160
LNL+ N A +F L QL+ILDLG N +
Sbjct: 386 LNLTKNHISKI----ANGTFSWLGQLRILDLGLNEIEQKL-------------------- 421
Query: 161 EGSGTMQGLAN-----LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTS 215
+GL N L Y + L LS + SL RL L+ + L+ I+ S
Sbjct: 422 -SGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLM------LRRVALKNVDISPS 474
Query: 216 QGLADLPNLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNI-------NGSLESQGLA 266
L NL LDL + I I L L+NLE LD NN+ N L
Sbjct: 475 -PFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLK 533
Query: 267 DLPNLKILDLRDCGMTTIQGKIFK 290
L +L IL+L G+ I +FK
Sbjct: 534 GLSHLHILNLESNGLDEIPVGVFK 557
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 166 MQGLANLRYLQVLDLSWNE-----------NITS--------GSLTRLGLANLTNLKELD 206
++ LANL L+ LD+S N+ N+ S +T LG+ LTNL EL
Sbjct: 170 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELS 227
Query: 207 LRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLA 266
L G + LA L NL LDL + I+ + L+ L L L L N I+ GL
Sbjct: 228 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 287
Query: 267 DLPNLKI 273
L NL++
Sbjct: 288 ALTNLEL 294
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 196 LANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN 255
LANLT L+ LD+ ++ LA L NL++L + I+ I L L NL+ L L+ N
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 232
Query: 256 INGSLESQGLADLPNLKILDLRD 278
+ + LA L NL LDL +
Sbjct: 233 LK---DIGTLASLTNLTDLDLAN 252
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 169 LANLRYLQVLDLSWNENITSGSLTRLG-LANLTNLKELDLRGCGITTSQGLADLPNLKTL 227
LA+L L LDL+ N+ ++ L L+ LT L EL L I+ LA L L L
Sbjct: 239 LASLTNLTDLDLANNQ------ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 292
Query: 228 DLRDCGITTIQGLAKLKNLEALDLSWNNI 256
+L + + I ++ LKNL L L +NNI
Sbjct: 293 ELNENQLEDISPISNLKNLTYLTLYFNNI 321
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 196 LANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN 255
LANLTNL L L IT L +L NL L+L I+ I L+ L +L+ L
Sbjct: 108 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG--- 164
Query: 256 INGSLESQGLADLPNLKILDLRDCGMTTI 284
N + + LA+L L+ LD+ ++ I
Sbjct: 165 -NQVTDLKPLANLTTLERLDISSNKVSDI 192
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 86/194 (44%), Gaps = 22/194 (11%)
Query: 94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXX 153
P + LQ L+L++N F G E + S G+ L LDL N F ++ P
Sbjct: 264 PLKSLQYLSLAENKFTG--EIPDFLS-GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 320
Query: 154 XXXXXXXEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLT-NLKELDLRGCGI 212
G M L +R L+VLDLS+NE SG L L NL+ +L LDL
Sbjct: 321 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNE--FSGELPE-SLTNLSASLLTLDLSSNNF 377
Query: 213 TTSQGLADLPN--------LKTLDLRDCGIT--TIQGLAKLKNLEALDLSWNNINGSLES 262
+ LPN L+ L L++ G T L+ L +L LS+N ++G++ S
Sbjct: 378 SG----PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 263 QGLADLPNLKILDL 276
L L L+ L L
Sbjct: 434 S-LGSLSKLRDLKL 446
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 166 MQGLANLRYLQVLDLSWNE-----------NITS--------GSLTRLGLANLTNLKELD 206
++ LANL L+ LD+S N+ N+ S +T LG+ LTNL EL
Sbjct: 166 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELS 223
Query: 207 LRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLA 266
L G + LA L NL LDL + I+ + L+ L L L L N I+ GL
Sbjct: 224 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 283
Query: 267 DLPNLKI 273
L NL++
Sbjct: 284 ALTNLEL 290
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 169 LANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLD 228
L NL L L+LS N I+ S L+ LT+L++L +T + LA+L L+ LD
Sbjct: 125 LKNLTNLNRLELSSNT-ISDIS----ALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLD 179
Query: 229 LRDCGITTIQGLAKLKNLEALDLSWNNI 256
+ ++ I LAKL NLE+L + N I
Sbjct: 180 ISSNKVSDISVLAKLTNLESLIATNNQI 207
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 12/115 (10%)
Query: 166 MQGLANLRYLQVLDLSWNENITSGSLTRL-GLANLTNLKELDLRGCGITTSQGLADLPNL 224
+ L+ L LQ L S N+ +T L LANLT L+ LD+ ++ LA L NL
Sbjct: 144 ISALSGLTSLQQLSFSSNQ------VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 225 KTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQG-LADLPNLKILDLRD 278
++L + I+ I L L NL+ L L+ N L+ G LA L NL LDL +
Sbjct: 198 ESLIATNNQISDITPLGILTNLDELSLNGN----QLKDIGTLASLTNLTDLDLAN 248
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 196 LANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN 255
LANLTNL L L IT L +L NL L+L I+ I L+ L +L+ L S N
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQ 162
Query: 256 INGSLESQGLADLPNLKILDLRDCGMTTI 284
+ + + LA+L L+ LD+ ++ I
Sbjct: 163 VT---DLKPLANLTTLERLDISSNKVSDI 188
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 169 LANLRYLQVLDLSWNENITSGSLTRLG-LANLTNLKELDLRGCGITTSQGLADLPNLKTL 227
LA+L L LDL+ N+ ++ L L+ LT L EL L I+ LA L L L
Sbjct: 235 LASLTNLTDLDLANNQ------ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 288
Query: 228 DLRDCGITTIQGLAKLKNLEALDLSWNNI 256
+L + + I ++ LKNL L L +NNI
Sbjct: 289 ELNENQLEDISPISNLKNLTYLTLYFNNI 317
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 86/194 (44%), Gaps = 22/194 (11%)
Query: 94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXX 153
P + LQ L+L++N F G E + S G+ L LDL N F ++ P
Sbjct: 267 PLKSLQYLSLAENKFTG--EIPDFLS-GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323
Query: 154 XXXXXXXEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLT-NLKELDLRGCGI 212
G M L +R L+VLDLS+NE SG L L NL+ +L LDL
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNE--FSGELPE-SLTNLSASLLTLDLSSNNF 380
Query: 213 TTSQGLADLPN--------LKTLDLRDCGIT--TIQGLAKLKNLEALDLSWNNINGSLES 262
+ LPN L+ L L++ G T L+ L +L LS+N ++G++ S
Sbjct: 381 SG----PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 263 QGLADLPNLKILDL 276
L L L+ L L
Sbjct: 437 S-LGSLSKLRDLKL 449
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 166 MQGLANLRYLQVLDLSWNE-----------NITS--------GSLTRLGLANLTNLKELD 206
++ LANL L+ LD+S N+ N+ S +T LG+ LTNL EL
Sbjct: 169 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELS 226
Query: 207 LRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLA 266
L G + LA L NL LDL + I+ + L+ L L L L N I+ GL
Sbjct: 227 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 286
Query: 267 DLPNLKI 273
L NL++
Sbjct: 287 ALTNLEL 293
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 196 LANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN 255
LANLT L+ LD+ ++ LA L NL++L + I+ I L L NL+ L L+ N
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 231
Query: 256 INGSLESQGLADLPNLKILDLRD 278
+ + LA L NL LDL +
Sbjct: 232 LK---DIGTLASLTNLTDLDLAN 251
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 169 LANLRYLQVLDLSWNENITSGSLTRLG-LANLTNLKELDLRGCGITTSQGLADLPNLKTL 227
LA+L L LDL+ N+ ++ L L+ LT L EL L I+ LA L L L
Sbjct: 238 LASLTNLTDLDLANNQ------ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 291
Query: 228 DLRDCGITTIQGLAKLKNLEALDLSWNNI 256
+L + + I ++ LKNL L L +NNI
Sbjct: 292 ELNENQLEDISPISNLKNLTYLTLYFNNI 320
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 196 LANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN 255
LANLTNL L L IT L +L NL L+L I+ I L+ L +L+ L
Sbjct: 107 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG--- 163
Query: 256 INGSLESQGLADLPNLKILDLRDCGMTTI 284
N + + LA+L L+ LD+ ++ I
Sbjct: 164 -NQVTDLKPLANLTTLERLDISSNKVSDI 191
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 166 MQGLANLRYLQVLDLSWNE-----------NITS--------GSLTRLGLANLTNLKELD 206
++ LANL L+ LD+S N+ N+ S +T LG+ LTNL EL
Sbjct: 166 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELS 223
Query: 207 LRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLA 266
L G + LA L NL LDL + I+ + L+ L L L L N I+ GL
Sbjct: 224 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 283
Query: 267 DLPNLKI 273
L NL++
Sbjct: 284 ALTNLEL 290
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 169 LANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLD 228
L NL L L+LS N I+ S L+ LT+L++L+ +T + LA+L L+ LD
Sbjct: 125 LKNLTNLNRLELSSNT-ISDIS----ALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLD 179
Query: 229 LRDCGITTIQGLAKLKNLEALDLSWNNI 256
+ ++ I LAKL NLE+L + N I
Sbjct: 180 ISSNKVSDISVLAKLTNLESLIATNNQI 207
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 12/115 (10%)
Query: 166 MQGLANLRYLQVLDLSWNENITSGSLTRL-GLANLTNLKELDLRGCGITTSQGLADLPNL 224
+ L+ L LQ L+ S N+ +T L LANLT L+ LD+ ++ LA L NL
Sbjct: 144 ISALSGLTSLQQLNFSSNQ------VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 225 KTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQG-LADLPNLKILDLRD 278
++L + I+ I L L NL+ L L+ N L+ G LA L NL LDL +
Sbjct: 198 ESLIATNNQISDITPLGILTNLDELSLNGN----QLKDIGTLASLTNLTDLDLAN 248
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 196 LANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN 255
LANLTNL L L IT L +L NL L+L I+ I L+ L +L+ L+ S N
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQ 162
Query: 256 INGSLESQGLADLPNLKILDLRDCGMTTI 284
+ + + LA+L L+ LD+ ++ I
Sbjct: 163 VT---DLKPLANLTTLERLDISSNKVSDI 188
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 169 LANLRYLQVLDLSWNENITSGSLTRLG-LANLTNLKELDLRGCGITTSQGLADLPNLKTL 227
LA+L L LDL+ N+ ++ L L+ LT L EL L I+ LA L L L
Sbjct: 235 LASLTNLTDLDLANNQ------ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 288
Query: 228 DLRDCGITTIQGLAKLKNLEALDLSWNNI 256
+L + + I ++ LKNL L L +NNI
Sbjct: 289 ELNENQLEDISPISNLKNLTYLTLYFNNI 317
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 166 MQGLANLRYLQVLDLSWNE-----------NITS--------GSLTRLGLANLTNLKELD 206
++ LANL L+ LD+S N+ N+ S +T LG+ LTNL EL
Sbjct: 165 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELS 222
Query: 207 LRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLA 266
L G + LA L NL LDL + I+ + L+ L L L L N I+ GL
Sbjct: 223 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 282
Query: 267 DLPNLKI 273
L NL++
Sbjct: 283 ALTNLEL 289
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 196 LANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN 255
LANLT L+ LD+ ++ LA L NL++L + I+ I L L NL+ L L+ N
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN- 226
Query: 256 INGSLESQG-LADLPNLKILDLRD 278
L+ G LA L NL LDL +
Sbjct: 227 ---QLKDIGTLASLTNLTDLDLAN 247
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 169 LANLRYLQVLDLSWNENITSGSLTRLG-LANLTNLKELDLRGCGITTSQGLADLPNLKTL 227
LA+L L LDL+ N+ ++ L L+ LT L EL L I+ LA L L L
Sbjct: 234 LASLTNLTDLDLANNQ------ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 287
Query: 228 DLRDCGITTIQGLAKLKNLEALDLSWNNI 256
+L + + I ++ LKNL L L +NNI
Sbjct: 288 ELNENQLEDISPISNLKNLTYLTLYFNNI 316
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 196 LANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN 255
LANLTNL L L IT L +L NL L+L I+ I L+ L +L+ L+
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFG--- 159
Query: 256 INGSLESQGLADLPNLKILDLRDCGMTTI 284
N + + LA+L L+ LD+ ++ I
Sbjct: 160 -NQVTDLKPLANLTTLERLDISSNKVSDI 187
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 166 MQGLANLRYLQVLDLSWNE-----------NITS--------GSLTRLGLANLTNLKELD 206
++ LANL L+ LD+S N+ N+ S +T LG+ LTNL EL
Sbjct: 166 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELS 223
Query: 207 LRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLA 266
L G + LA L NL LDL + I+ + L+ L L L L N I+ GL
Sbjct: 224 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 283
Query: 267 DLPNLKI 273
L NL++
Sbjct: 284 ALTNLEL 290
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 169 LANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLD 228
L NL L L+LS N I+ S L+ LT+L++L +T + LA+L L+ LD
Sbjct: 125 LKNLTNLNRLELSSNT-ISDIS----ALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLD 179
Query: 229 LRDCGITTIQGLAKLKNLEALDLSWNNI 256
+ ++ I LAKL NLE+L + N I
Sbjct: 180 ISSNKVSDISVLAKLTNLESLIATNNQI 207
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 12/115 (10%)
Query: 166 MQGLANLRYLQVLDLSWNENITSGSLTRL-GLANLTNLKELDLRGCGITTSQGLADLPNL 224
+ L+ L LQ L S N+ +T L LANLT L+ LD+ ++ LA L NL
Sbjct: 144 ISALSGLTSLQQLSFSSNQ------VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 197
Query: 225 KTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQG-LADLPNLKILDLRD 278
++L + I+ I L L NL+ L L+ N L+ G LA L NL LDL +
Sbjct: 198 ESLIATNNQISDITPLGILTNLDELSLNGN----QLKDIGTLASLTNLTDLDLAN 248
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 196 LANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN 255
LANLTNL L L IT L +L NL L+L I+ I L+ L +L+ L S N
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQ 162
Query: 256 INGSLESQGLADLPNLKILDLRDCGMTTI 284
+ + + LA+L L+ LD+ ++ I
Sbjct: 163 VT---DLKPLANLTTLERLDISSNKVSDI 188
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 169 LANLRYLQVLDLSWNENITSGSLTRLG-LANLTNLKELDLRGCGITTSQGLADLPNLKTL 227
LA+L L LDL+ N+ ++ L L+ LT L EL L I+ LA L L L
Sbjct: 235 LASLTNLTDLDLANNQ------ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 288
Query: 228 DLRDCGITTIQGLAKLKNLEALDLSWNNI 256
+L + + I ++ LKNL L L +NNI
Sbjct: 289 ELNENQLEDISPISNLKNLTYLTLYFNNI 317
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 166 MQGLANLRYLQVLDLSWNE-----------NITS--------GSLTRLGLANLTNLKELD 206
++ LANL L+ LD+S N+ N+ S +T LG+ LTNL EL
Sbjct: 165 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELS 222
Query: 207 LRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLA 266
L G + LA L NL LDL + I+ + L+ L L L L N I+ GL
Sbjct: 223 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 282
Query: 267 DLPNLKI 273
L NL++
Sbjct: 283 ALTNLEL 289
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 196 LANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN 255
LANLT L+ LD+ ++ LA L NL++L + I+ I L L NL+ L L+ N
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN- 226
Query: 256 INGSLESQG-LADLPNLKILDLRD 278
L+ G LA L NL LDL +
Sbjct: 227 ---QLKDIGTLASLTNLTDLDLAN 247
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 169 LANLRYLQVLDLSWNENITSGSLTRLG-LANLTNLKELDLRGCGITTSQGLADLPNLKTL 227
LA+L L LDL+ N+ ++ L L+ LT L EL L I+ LA L L L
Sbjct: 234 LASLTNLTDLDLANNQ------ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 287
Query: 228 DLRDCGITTIQGLAKLKNLEALDLSWNNI 256
+L + + I ++ LKNL L L +NNI
Sbjct: 288 ELNENQLEDISPISNLKNLTYLTLYFNNI 316
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 196 LANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN 255
LANLTNL L L IT L +L NL L+L I+ I L+ L +L+ L+
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFG--- 159
Query: 256 INGSLESQGLADLPNLKILDLRDCGMTTI 284
N + + LA+L L+ LD+ ++ I
Sbjct: 160 -NQVTDLKPLANLTTLERLDISSNKVSDI 187
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQG---LAD 220
G G+ L L+ L LS N L ++ AN +L L +RG G L
Sbjct: 289 GLPSGMKGLNLLKKLVLSVNH---FDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEK 345
Query: 221 LPNLKTLDLRDCGIT-----TIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILD 275
L NL+TLDL I ++Q L L +L+ L+LS N G L+SQ + P L++LD
Sbjct: 346 LGNLQTLDLSHNDIEASDCCSLQ-LKNLSHLQTLNLSHNEPLG-LQSQAFKECPQLELLD 403
Query: 276 L 276
L
Sbjct: 404 L 404
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 84/209 (40%), Gaps = 45/209 (21%)
Query: 55 GVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYEN 114
GV C + L L++ + + D S L N+S LQ+LNLS N G
Sbjct: 339 GVGCLEKLGNLQTLDLSHND-IEASDCCSLQLKNLS------HLQTLNLSHNEPLGLQS- 390
Query: 115 KAYDSFGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXXEGSGTMQGLANLRY 174
+F QL++LDL + NL +
Sbjct: 391 ---QAFKECPQLELLDLA------------------------FTRLHINAPQSPFQNLHF 423
Query: 175 LQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCG-----ITTSQGLADLPNLKTLDL 229
LQVL+L++ TS + LA L L+ L+L+G IT + L + +L+ L L
Sbjct: 424 LQVLNLTYCFLDTSN---QHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLIL 480
Query: 230 RDCGITTI--QGLAKLKNLEALDLSWNNI 256
CG+ +I Q L + +DLS N++
Sbjct: 481 SSCGLLSIDQQAFHSLGKMSHVDLSHNSL 509
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 192 TRLGLANLTNLKELDLRGCGITT--SQGLADLPNLKTLDLRDCGITTI--QGLAKLKNLE 247
T GLA ++++ LDL + + S+ L +LK L+L I I + L NL+
Sbjct: 259 TFAGLAR-SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317
Query: 248 ALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
L+LS+N + G L S LP + +DL+ + IQ + FK
Sbjct: 318 VLNLSYNLL-GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 77/197 (39%), Gaps = 47/197 (23%)
Query: 109 RGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXXEGSGTMQG 168
GF + F +LK LK+L+L N N G
Sbjct: 275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKI----------------------ADEAFYG 312
Query: 169 LANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLR--GCGITTSQGLADLPNLKT 226
L NL QVL+LS+N G L L + +DL+ I Q L L+T
Sbjct: 313 LDNL---QVLNLSYN---LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366
Query: 227 LDLRDCGITTIQGLA----------KLKNLEALDLSWNNINGS---LES----QGLADLP 269
LDLRD +TTI + KL L ++L+ N I+ S LE+ L +P
Sbjct: 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426
Query: 270 NLKILDLRDCGMTTIQG 286
+L+IL L ++ G
Sbjct: 427 HLQILILNQNRFSSCSG 443
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 72/186 (38%), Gaps = 56/186 (30%)
Query: 95 FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDL-GCNFFNDSILPXXXXXXXXXXX 153
F L++L L+ N R S SL +L+ L + C + P
Sbjct: 126 FAGLETLTLARNPLRALPA-----SIASLNRLRELSIRACPELTELPEPLAST------- 173
Query: 154 XXXXXXXEGSGTMQGLANLRYLQVLDLSWN------------ENITS-----GSLTRLGL 196
+ SG QGL NL Q L L W +N+ S L+ LG
Sbjct: 174 -------DASGEHQGLVNL---QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP 223
Query: 197 A--NLTNLKELDLRGCGITTSQGLADLP-------NLKTLDLRDCG--ITTIQGLAKLKN 245
A +L L+ELDLRGC L + P LK L L+DC +T + +L
Sbjct: 224 AIHHLPKLEELDLRGCT-----ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278
Query: 246 LEALDL 251
LE LDL
Sbjct: 279 LEKLDL 284
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 24/112 (21%)
Query: 195 GLANLTNLKELDLRGCGITTS--------------QGLADLPNLKTLDLRDCGITTIQG- 239
+A+L L+EL +R C T QGL NL++L L GI ++
Sbjct: 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV---NLQSLRLEWTGIRSLPAS 201
Query: 240 LAKLKNLEALDLSWNNINGSLESQGLA--DLPNLKILDLRDCGMTTIQGKIF 289
+A L+NL++L + N L + G A LP L+ LDLR C IF
Sbjct: 202 IANLQNLKSLKIR----NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF 249
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 195 GLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWN 254
GL +L L+ L L IT L+ L L TL L D I I LA+L L+ L LS N
Sbjct: 127 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLARLTKLQNLYLSKN 186
Query: 255 NINGSLESQGLADLPNLKILDL 276
+I+ + + L L NL +L+L
Sbjct: 187 HIS---DLRALRGLKNLDVLEL 205
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 211 GITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPN 270
GI+ GL LP L++L L + IT I L++L L+ L L N I + L L N
Sbjct: 121 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLARLTKLQN 180
Query: 271 L-----KILDLR 277
L I DLR
Sbjct: 181 LYLSKNHISDLR 192
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 184 ENITSGSLTRLGLAN-LTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAK 242
+N+ S+T N L ++ ++ I + QG+ LPN+ L L +T I+ LA
Sbjct: 27 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLAN 86
Query: 243 LKNLEALDLSWNNI-------------------NGSLESQGLADLPNLKILDLRDCGMTT 283
LKNL L L N + NG + GL LP L+ L L + +T
Sbjct: 87 LKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD 146
Query: 284 I 284
I
Sbjct: 147 I 147
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 10/129 (7%)
Query: 169 LANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPN---LK 225
L NLR+LQ L+LS+NE + L L+ LD+ + + N L+
Sbjct: 371 LKNLRHLQYLNLSYNEPL---GLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLR 427
Query: 226 TLDLRDCGITTIQG--LAKLKNLEALDLSWNNI-NGSLESQGLADLP-NLKILDLRDCGM 281
L+L C + T LA L++L L+L N+ +GS+ L + +L+IL L C +
Sbjct: 428 VLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNL 487
Query: 282 TTIQGKIFK 290
+I + F
Sbjct: 488 LSIDQQAFH 496
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCG-----ITTSQGLADLPNLK 225
NL L+VL+LS TS LA L +L+ L+L+G I+ + L + +L+
Sbjct: 422 NLHLLRVLNLSHCLLDTSNQHL---LAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLE 478
Query: 226 TLDLRDCGITTI--QGLAKLKNLEALDLSWNNING 258
L L C + +I Q L+N+ LDLS N++ G
Sbjct: 479 ILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 211 GITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPN 270
GI+ GL LP L++L L + IT I L++L L+ L L N I+ + GL L N
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 182
Query: 271 L-----KILDLR 277
L I DLR
Sbjct: 183 LYLSKNHISDLR 194
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 184 ENITSGSLTRLGLAN-LTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAK 242
+N+ S+T N L ++ ++ I + QG+ LPN+ L L +T I+ LA
Sbjct: 29 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLAN 88
Query: 243 LKNLEALDLSWNNI-------------------NGSLESQGLADLPNLKILDLRDCGMTT 283
LKNL L L N + NG + GL LP L+ L L + +T
Sbjct: 89 LKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD 148
Query: 284 I 284
I
Sbjct: 149 I 149
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 211 GITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPN 270
GI+ GL LP L++L L + IT I L++L L+ L L N I+ + GL L N
Sbjct: 120 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 179
Query: 271 L-----KILDLR 277
L I DLR
Sbjct: 180 LYLSKNHISDLR 191
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 184 ENITSGSLTRLGLAN-LTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAK 242
+N+ S+T N L ++ ++ I + QG+ LPN+ L L +T I+ L
Sbjct: 26 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTN 85
Query: 243 LKNLEALDLSWNNI-------------------NGSLESQGLADLPNLKILDLRDCGMTT 283
LKNL L L N I NG + GL LP L+ L L + +T
Sbjct: 86 LKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD 145
Query: 284 I 284
I
Sbjct: 146 I 146
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 212 ITTSQGLADLP-----NLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQG 264
I T + LA++P N + L+L++ I I+ L++LE L LS N+ +E
Sbjct: 20 ICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLS-KNLVRKIEVGA 78
Query: 265 LADLPNLKILDLRDCGMTTIQGKIFK 290
LP+L L+L D +TT+ + F+
Sbjct: 79 FNGLPSLNTLELFDNRLTTVPTQAFE 104
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 84/249 (33%), Gaps = 38/249 (15%)
Query: 46 PSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYD--RTSASLLNMSLFHPFEELQSLNL 103
P+ C + + T R + ++ + Y + S ++ F L+ L L
Sbjct: 7 PAACSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQL 66
Query: 104 SDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXXEGS 163
S N R E A++ SL L++ D
Sbjct: 67 SKNLVRKI-EVGAFNGLPSLNTLELFD-------------------------------NR 94
Query: 164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL---RGCGITTSQGLAD 220
T YL L W N S+ + +L+ LDL + +
Sbjct: 95 LTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEG 154
Query: 221 LPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCG 280
L NL+ L+L C + I L L LE L+LS N ++ + L +L+ L L
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLD-LIRPGSFQGLTSLRKLWLMHAQ 213
Query: 281 MTTIQGKIF 289
+ TI+ F
Sbjct: 214 VATIERNAF 222
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 211 GITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPN 270
GI+ GL LP L++L L + IT I L++L L+ L L N I+ + GL L N
Sbjct: 121 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 180
Query: 271 L-----KILDLR 277
L I DLR
Sbjct: 181 LYLSKNHISDLR 192
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 184 ENITSGSLTRLGLAN-LTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAK 242
+N+ S+T N L ++ ++ I + QG+ LPN+ L L +T I+ LA
Sbjct: 27 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLAN 86
Query: 243 LKNLEALDLSWNNI-------------------NGSLESQGLADLPNLKILDLRDCGMTT 283
LKNL L L N + NG + GL LP L+ L L + +T
Sbjct: 87 LKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD 146
Query: 284 I 284
I
Sbjct: 147 I 147
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 211 GITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPN 270
GI+ GL LP L++L L + IT I L++L L+ L L N I+ + GL L N
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 182
Query: 271 L-----KILDLR 277
L I DLR
Sbjct: 183 LYLSKNHISDLR 194
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 184 ENITSGSLTRLGLAN-LTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAK 242
+N+ S+T N L ++ ++ I + QG+ LPN+ L L +T I+ LA
Sbjct: 29 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLAN 88
Query: 243 LKNLEALDLSWNNI-------------------NGSLESQGLADLPNLKILDLRDCGMTT 283
LKNL L L N + NG + GL LP L+ L L + +T
Sbjct: 89 LKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD 148
Query: 284 I 284
I
Sbjct: 149 I 149
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 211 GITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPN 270
GI+ GL LP L++L L + IT I L++L L+ L L N I+ + GL L N
Sbjct: 143 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 202
Query: 271 L-----KILDLR 277
L I DLR
Sbjct: 203 LYLSKNHISDLR 214
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 19/109 (17%)
Query: 195 GLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWN 254
G+ L NL L+L IT + LPN+ L L +T I+ LA LKNL L L N
Sbjct: 61 GIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN 120
Query: 255 NI-------------------NGSLESQGLADLPNLKILDLRDCGMTTI 284
+ NG + GL LP L+ L L + +T I
Sbjct: 121 KVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI 169
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 211 GITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPN 270
GI+ GL LP L++L L + IT I L++L L+ L L N I+ + GL L N
Sbjct: 141 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 200
Query: 271 L-----KILDLR 277
L I DLR
Sbjct: 201 LYLSKNHISDLR 212
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 19/105 (18%)
Query: 199 LTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNI-- 256
L ++ ++ I + QG+ LPN+ L L +T I+ L LKNL L L N I
Sbjct: 63 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD 122
Query: 257 -----------------NGSLESQGLADLPNLKILDLRDCGMTTI 284
NG + GL LP L+ L L + +T I
Sbjct: 123 LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI 167
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 211 GITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPN 270
GI+ GL LP L++L L + IT I L++L L+ L L N I+ + GL L N
Sbjct: 141 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 200
Query: 271 L-----KILDLR 277
L I DLR
Sbjct: 201 LYLSKNHISDLR 212
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 184 ENITSGSLTRLGLAN-LTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAK 242
+N+ S+T N L ++ ++ I + QG+ LPN+ L L +T I+ L
Sbjct: 47 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTN 106
Query: 243 LKNLEALDLSWNNI-------------------NGSLESQGLADLPNLKILDLRDCGMTT 283
LKNL L L N I NG + GL LP L+ L L + +T
Sbjct: 107 LKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD 166
Query: 284 I 284
I
Sbjct: 167 I 167
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 211 GITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPN 270
GI+ GL LP L++L L + IT I L++L L+ L L N I+ + GL L N
Sbjct: 141 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 200
Query: 271 L-----KILDLR 277
L I DLR
Sbjct: 201 LYLSKNHISDLR 212
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 19/105 (18%)
Query: 199 LTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNI-- 256
L ++ ++ I + QG+ LPN+ L L +T I+ L LKNL L L N I
Sbjct: 63 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD 122
Query: 257 -----------------NGSLESQGLADLPNLKILDLRDCGMTTI 284
NG + GL LP L+ L L + +T I
Sbjct: 123 LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI 167
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 211 GITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPN 270
GI+ GL LP L++L L + IT I L++L L+ L L N I+ + GL L N
Sbjct: 118 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 177
Query: 271 L-----KILDLR 277
L I DLR
Sbjct: 178 LYLSKNHISDLR 189
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 184 ENITSGSLTRLGLAN-LTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAK 242
+N+ S+T N L ++ ++ I + QG+ LPN+ L L +T I+ L
Sbjct: 24 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTN 83
Query: 243 LKNLEALDLSWNNI-------------------NGSLESQGLADLPNLKILDLRDCGMTT 283
LKNL L L N I NG + GL LP L+ L L + +T
Sbjct: 84 LKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD 143
Query: 284 I 284
I
Sbjct: 144 I 144
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 212 ITTSQGLADLP-----NLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNINGSLESQG 264
I T + LA++P N + L+L++ I I+ L++LE L LS N+ +E
Sbjct: 20 ICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLS-KNLVRKIEVGA 78
Query: 265 LADLPNLKILDLRDCGMTTIQGKIFK 290
LP+L L+L D +TT+ + F+
Sbjct: 79 FNGLPSLNTLELFDNRLTTVPTQAFE 104
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 84/249 (33%), Gaps = 38/249 (15%)
Query: 46 PSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYD--RTSASLLNMSLFHPFEELQSLNL 103
P+ C + + T R + ++ + Y + S ++ F L+ L L
Sbjct: 7 PAACSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQL 66
Query: 104 SDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXXEGS 163
S N R E A++ SL L++ D
Sbjct: 67 SKNLVRKI-EVGAFNGLPSLNTLELFD-------------------------------NR 94
Query: 164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL---RGCGITTSQGLAD 220
T YL L W N S+ + +L+ LDL + +
Sbjct: 95 LTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEG 154
Query: 221 LPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCG 280
L NL+ L+L C + I L L LE L+LS N ++ + L +L+ L L
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLD-LIRPGSFQGLTSLRKLWLMHAQ 213
Query: 281 MTTIQGKIF 289
+ TI+ F
Sbjct: 214 VATIERNAF 222
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 211 GITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPN 270
GI+ GL LP L++L L + IT I L++L L+ L L N I+ + L L N
Sbjct: 118 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLACLTKLQN 177
Query: 271 L-----KILDLRD-CGM 281
L I DLR CG+
Sbjct: 178 LYLSKNHISDLRALCGL 194
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 184 ENITSGSLTRLGLAN-LTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAK 242
+N+ S+T N L ++ ++ I + QG+ LPN+ L L +T I+ LA
Sbjct: 24 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLAN 83
Query: 243 LKNLEALDLSWNNI-------------------NGSLESQGLADLPNLKILDLRDCGMTT 283
LKNL L L N + NG + GL LP L+ L L + +T
Sbjct: 84 LKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD 143
Query: 284 I 284
I
Sbjct: 144 I 144
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 161 EGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLAD 220
E ++QG+ L L+ L+L+ N+ IT S L+NL L L + IT L +
Sbjct: 54 EKVASIQGIEYLTNLEYLNLNGNQ-ITDIS----PLSNLVKLTNLYIGTNKITDISALQN 108
Query: 221 LPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN 255
L NL+ L L + I+ I LA L +L+L N+
Sbjct: 109 LTNLRELYLNEDNISDISPLANLTKXYSLNLGANH 143
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 223 NLKTLDLRDCGI--TTIQGLAKLKNLEALDLSWNNINGSLESQG 264
NL LDLR+ I T QGL +LK L +L++S+NN+ G + G
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 70/194 (36%), Gaps = 49/194 (25%)
Query: 101 LNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXX 160
LNL +N + N SF L+ L+IL L N +
Sbjct: 69 LNLHENQIQIIKVN----SFKHLRHLEILQLSRNHIRTIEI------------------- 105
Query: 161 EGSGTMQGLANLRYLQVLD-------------LS-----WNENITSGSLTRLGLANLTNL 202
G GLANL L++ D LS W N S+ + +L
Sbjct: 106 ---GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162
Query: 203 KELDL---RGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGS 259
+ LDL + + L NL+ L+L C + I L L L+ LDLS N+++
Sbjct: 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI 222
Query: 260 LES--QGLADLPNL 271
QGL L L
Sbjct: 223 RPGSFQGLMHLQKL 236
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 19/81 (23%)
Query: 196 LANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN 255
L NL NL+ELDL I TS D NL+ L L +L++L+LS+N
Sbjct: 346 LENLENLRELDLSHDDIETS----DCCNLQ--------------LRNLSHLQSLNLSYNE 387
Query: 256 INGSLESQGLADLPNLKILDL 276
SL+++ + P L++LDL
Sbjct: 388 -PLSLKTEAFKECPQLELLDL 407
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 169 LANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLD 228
L NL +LQ L+LS+NE + SL L+ LDL + + NL L
Sbjct: 372 LRNLSHLQSLNLSYNEPL---SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428
Query: 229 LRDCG-----ITTIQGLAKLKNLEALDLSWNNI-NGSLE-SQGLADLPNLKILDLRDCGM 281
+ + I++ Q L L+ L+L N+ G+++ + L L L+IL L C +
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488
Query: 282 TTIQGKIF 289
++I F
Sbjct: 489 SSIDQHAF 496
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 94/249 (37%), Gaps = 44/249 (17%)
Query: 48 DCCDDWEGVKCNATTRR----VMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNL 103
C + + V C TRR V Q + T LN + + ++ F L+ L L
Sbjct: 51 SCSNQFSKVVC---TRRGLSEVPQGIPSNTRYLNLME-NNIQMIQADTFRHLHHLEVLQL 106
Query: 104 SDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXXEGS 163
N R E A++ SL L++ D N+ +++P S
Sbjct: 107 GRNSIRQI-EVGAFNGLASLNTLELFD---NWL--TVIP--------------------S 140
Query: 164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL---RGCGITTSQGLAD 220
G + L+ LR L W N S+ + +L LDL + +
Sbjct: 141 GAFEYLSKLREL------WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Query: 221 LPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCG 280
L NLK L+L C I + L L LE L++S N+ + L +LK L + +
Sbjct: 195 LFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQ 253
Query: 281 MTTIQGKIF 289
++ I+ F
Sbjct: 254 VSLIERNAF 262
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 185 NITSGSLTRLGLANLTNLKELDLRGCGITTSQGL-----ADLPNLKTLDLRDCGITTI-- 237
N+T L RL AN T +L G T L LP LK L+L+ ++ +
Sbjct: 36 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD 95
Query: 238 QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ 285
+ A NL L L N+I +++ NL LDL G+++ +
Sbjct: 96 KTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTK 142
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 98/257 (38%), Gaps = 55/257 (21%)
Query: 51 DDWEGVKCNATT----RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDN 106
+D G+K N T + + LS ++T + T SL + L LNL+ N
Sbjct: 344 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-------SPLHILNLTKN 396
Query: 107 WFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXXEGSGTM 166
D+F L L++LDLG N + T
Sbjct: 397 KISKIES----DAFSWLGHLEVLDLGLNEIGQEL------------------------TG 428
Query: 167 QGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGI----TTSQGLADLP 222
Q L + + LS+N+ + LTR A + +L+ L LR + ++ L
Sbjct: 429 QEWRGLENIFEIYLSYNKYL---QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 485
Query: 223 NLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNI-------NGSLESQGLADLPNLKI 273
NL LDL + I I L L+ LE LDL NN+ N L L +L I
Sbjct: 486 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 545
Query: 274 LDLRDCGMTTIQGKIFK 290
L+L G I ++FK
Sbjct: 546 LNLESNGFDEIPVEVFK 562
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 98/257 (38%), Gaps = 55/257 (21%)
Query: 51 DDWEGVKCNATT----RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDN 106
+D G+K N T + + LS ++T + T SL + L LNL+ N
Sbjct: 349 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-------SPLHILNLTKN 401
Query: 107 WFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXXEGSGTM 166
D+F L L++LDLG N + T
Sbjct: 402 KISKIES----DAFSWLGHLEVLDLGLNEIGQEL------------------------TG 433
Query: 167 QGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGI----TTSQGLADLP 222
Q L + + LS+N+ + LTR A + +L+ L LR + ++ L
Sbjct: 434 QEWRGLENIFEIYLSYNKYL---QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 490
Query: 223 NLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNI-------NGSLESQGLADLPNLKI 273
NL LDL + I I L L+ LE LDL NN+ N L L +L I
Sbjct: 491 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 550
Query: 274 LDLRDCGMTTIQGKIFK 290
L+L G I ++FK
Sbjct: 551 LNLESNGFDEIPVEVFK 567
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 185 NITSGSLTRLGLANLTNLKELDLRGCGITTSQGL-----ADLPNLKTLDLRDCGITTI-- 237
N+T L RL AN T +L G T L LP LK L+L+ ++ +
Sbjct: 41 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD 100
Query: 238 QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ 285
+ A NL L L N+I +++ NL LDL G+++ +
Sbjct: 101 KTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTK 147
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 185 NITSGSLTRLGLANLTNLKELDLRGCGITTSQGL-----ADLPNLKTLDLRDCGITTI-- 237
N+T L RL AN T +L G T L LP LK L+L+ ++ +
Sbjct: 31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD 90
Query: 238 QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ 285
+ A NL L L N+I +++ NL LDL G+++ +
Sbjct: 91 KTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTK 137
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 98/257 (38%), Gaps = 55/257 (21%)
Query: 51 DDWEGVKCNATT----RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDN 106
+D G+K N T + + LS ++T + T SL + L LNL+ N
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-------SPLHILNLTKN 391
Query: 107 WFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXXEGSGTM 166
D+F L L++LDLG N + T
Sbjct: 392 KISKIES----DAFSWLGHLEVLDLGLNEIGQEL------------------------TG 423
Query: 167 QGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGI----TTSQGLADLP 222
Q L + + LS+N+ + LTR A + +L+ L LR + ++ L
Sbjct: 424 QEWRGLENIFEIYLSYNKYL---QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480
Query: 223 NLKTLDLRDCGITTIQG--LAKLKNLEALDLSWNNI-------NGSLESQGLADLPNLKI 273
NL LDL + I I L L+ LE LDL NN+ N L L +L I
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540
Query: 274 LDLRDCGMTTIQGKIFK 290
L+L G I ++FK
Sbjct: 541 LNLESNGFDEIPVEVFK 557
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 249 LDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
LDLSWN + L S P L++LDL C + TI+ ++
Sbjct: 35 LDLSWNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 75
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 249 LDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290
LDLSWN + L S P L++LDL C + TI+ ++
Sbjct: 34 LDLSWNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 74
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 175 LQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGI 234
++VL L+ + L +L L +L LR LA L L+ L D +
Sbjct: 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA----LPPALAALRCLEVLQASDNAL 498
Query: 235 TTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD---CGMTTIQGKI 288
+ G+A L L+ L L N + S Q L P L +L+L+ C IQ ++
Sbjct: 499 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 555
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 175 LQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGI 234
++VL L+ + L +L L +L LR LA L L+ L D +
Sbjct: 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA----LPPALAALRCLEVLQASDNAL 498
Query: 235 TTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD---CGMTTIQGKI 288
+ G+A L L+ L L N + S Q L P L +L+L+ C IQ ++
Sbjct: 499 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 555
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 241 AKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
+L NL +L LS N++N + S+ +PNL+ LDL + T+ +F
Sbjct: 61 TRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLHTLDEFLF 108
>pdb|1O99|A Chain A, Crystal Structure Of The S62a Mutant Of Phosphoglycerate
Mutase From Bacillus Stearothermophilus Complexed With
2-Phosphoglycerate
Length = 511
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 30 YDDKILPSWVGEDDGMPSDCCDDWEGVK-CNATTRRVMQLSLTYT-ERLNYYDR 81
YD+ +LPS + +DG P D + + N R +Q+S T+T E +DR
Sbjct: 229 YDEFVLPSVIVREDGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDR 282
>pdb|1EJJ|A Chain A, Crystal Structural Analysis Of Phosphoglycerate Mutase
Cocrystallized With 3-Phosphoglycerate
pdb|1EQJ|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From Bacillus
Stearothermophilus Complexed With 2-Phosphoglycerate
pdb|1O98|A Chain A, 1.4a Crystal Structure Of Phosphoglycerate Mutase From
Bacillus Stearothermophilus Complexed With
2-Phosphoglycerate
Length = 511
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 30 YDDKILPSWVGEDDGMPSDCCDDWEGVK-CNATTRRVMQLSLTYT-ERLNYYDR 81
YD+ +LPS + +DG P D + + N R +Q+S T+T E +DR
Sbjct: 229 YDEFVLPSVIVREDGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDR 282
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 243 LKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
L LE LDLS+N+I +L Q LPNLK L L + ++ IF
Sbjct: 346 LDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 44/113 (38%), Gaps = 29/113 (25%)
Query: 90 SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPXXXXXXX 149
S+F F +L+ L L+ N +N +F L L L+L NF
Sbjct: 293 SVFSHFTDLEQLTLAQNEINKIDDN----AFWGLTHLLKLNLSQNFL------------- 335
Query: 150 XXXXXXXXXXXEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNL 202
GS + NL L+VLDLS+N G + LGL NL L
Sbjct: 336 ------------GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 186 ITSGSLTRLGLAN-----------LTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGI 234
I S L+RL L N L NL+ L +R + + L L L+ LDL I
Sbjct: 103 IPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEI 162
Query: 235 TTIQGLAKLKNLEALDLS 252
T GL +LK + +DL+
Sbjct: 163 TNTGGLTRLKKVNWIDLT 180
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 16/124 (12%)
Query: 166 MQGLANLRYL-----QVLDLSWNENITSG---SLTRLGLANLTN-----LKELDLRGCGI 212
MQ NL+ L Q+ DLS +++T S+ R L NL L L L +
Sbjct: 59 MQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNEL 118
Query: 213 TTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLK 272
+ L L NL+ L +R+ + +I L L LE LDL N I + GL L +
Sbjct: 119 RDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN---TGGLTRLKKVN 175
Query: 273 ILDL 276
+DL
Sbjct: 176 WIDL 179
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 195 GLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWN 254
G+ TNLKEL L I+ L DL L+ L + + + G+ L L L N
Sbjct: 58 GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNN 116
Query: 255 NINGSLESQGLADLPNLKILDLRDCGMTTI 284
+ ++ L L NL+IL +R+ + +I
Sbjct: 117 ELR---DTDSLIHLKNLEILSIRNNKLKSI 143
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADL 221
G GL++L L++ S+ EN T L NL LDL C + + L
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTE-----LRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 222 PNLKTLDLRDCGITTIQGLAK--LKNLEALDLSWNNINGSLESQGLADLPN 270
+L+ L++ ++ L +L+ LD S N+I S + Q L P+
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS-KKQELQHFPS 543
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADL 221
G GL++L L++ S+ EN T L NL LDL C + + L
Sbjct: 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTE-----LRNLTFLDLSQCQLEQLSPTAFNSL 517
Query: 222 PNLKTLDLRDCGITTIQGLAK--LKNLEALDLSWNNINGSLESQGLADLPN 270
+L+ L++ ++ L +L+ LD S N+I S + Q L P+
Sbjct: 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS-KKQELQHFPS 567
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 185 NITSGSLTRLGLAN-LTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKL 243
N+ S+T N L ++ ++ I + QG+ LPN++ L L + I L +L
Sbjct: 25 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKEL 84
Query: 244 KNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
NL L L+ N + SL + L NLK L L + + ++ +F
Sbjct: 85 TNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 199 LTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNING 258
L ++ ++ I + QG+ LPN++ L L + I L +L NL L L+ N +
Sbjct: 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ- 98
Query: 259 SLESQGLADLPNLKILDLRDCGMTTIQGKIF 289
SL + L NLK L L + + ++ +F
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 14/124 (11%)
Query: 163 SGTMQGLANLRY----LQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGL 218
S Q LA+LR ++ LDLS N ++ LA T L+ L+L + + L
Sbjct: 20 SSLKQALASLRQSAWNVKELDLSGN---PLSQISAADLAPFTKLELLNLSSNVLYETLDL 76
Query: 219 ADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLAD----LPNLKIL 274
L L+TLDL + +Q L ++E L + NNI+ S+G L N KI
Sbjct: 77 ESLSTLRTLDLNN---NYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT 133
Query: 275 DLRD 278
LRD
Sbjct: 134 MLRD 137
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADL 221
G GL++L L++ S+ EN T L NL LDL C + + L
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTE-----LRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 222 PNLKTLDLRDCGITTIQGLAK--LKNLEALDLSWNNINGSLESQGLADLP-NLKILDL 276
+L+ L++ ++ L +L+ LD S N+I S + Q L P +L L+L
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS-KKQELQHFPSSLAFLNL 255
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 29/99 (29%)
Query: 166 MQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLK 225
++GLA + L+VLDL N + T LG + L + L PNL+
Sbjct: 208 LEGLAYCQELKVLDLQDN------TFTHLGSSAL---------------AIALKSWPNLR 246
Query: 226 TLDLRDC------GITTIQGLAKLKN--LEALDLSWNNI 256
L L DC + +KL+N L+ L L +N I
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 285
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 29/99 (29%)
Query: 166 MQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLK 225
++GLA + L+VLDL N + T LG + L + L PNL+
Sbjct: 209 LEGLAYCQELKVLDLQDN------TFTHLGSSAL---------------AIALKSWPNLR 247
Query: 226 TLDLRDC------GITTIQGLAKLKN--LEALDLSWNNI 256
L L DC + +KL+N L+ L L +N I
Sbjct: 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 53/152 (34%), Gaps = 8/152 (5%)
Query: 46 PSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSD 105
PS C V C + + + ++ Y + L +F L+ L L
Sbjct: 14 PSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGS 73
Query: 106 NWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPXXXXXXXXXXXXXXXXXXEGSGT 165
N F SL QL +LDLG N ++LP + +
Sbjct: 74 NQLGAL----PVGVFDSLTQLTVLDLGTNQL--TVLPSAVFDRLVHLKELFMCCNKLTEL 127
Query: 166 MQGLANLRYLQVLDLSWNE--NITSGSLTRLG 195
+G+ L +L L L N+ +I G+ RL
Sbjct: 128 PRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 184 ENITSGSLTRLGLANLTNLKELDLRGCGI---TTSQGLADLPNLKTLDLRDCGITTI 237
+N SG L L NL L+L G I +T + L L NLK+LDL +C +T +
Sbjct: 73 DNRVSGGLEVLA-EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 242 KLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI---QGKIFK 290
K NL L+LS N I + L L NLK LDL +C +T + + +FK
Sbjct: 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFK 137
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 14/124 (11%)
Query: 163 SGTMQGLANLRY----LQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGL 218
S Q LA+LR ++ LDLS N ++ LA T L+ L+L + + L
Sbjct: 20 SSLKQALASLRQSAWNVKELDLSGN---PLSQISAADLAPFTKLELLNLSSNVLYETLDL 76
Query: 219 ADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLAD----LPNLKIL 274
L L+TLDL + +Q L ++E L + NNI+ S+G L N KI
Sbjct: 77 ESLSTLRTLDLNN---NYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT 133
Query: 275 DLRD 278
LRD
Sbjct: 134 MLRD 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,105,477
Number of Sequences: 62578
Number of extensions: 304529
Number of successful extensions: 1016
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 247
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)