Query 022897
Match_columns 290
No_of_seqs 292 out of 3977
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:56:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.4E-30 3E-35 253.4 19.7 252 8-289 27-304 (968)
2 PLN00113 leucine-rich repeat r 99.9 5.9E-23 1.3E-27 200.1 14.5 187 91-286 159-349 (968)
3 KOG4194 Membrane glycoprotein 99.8 2.5E-22 5.5E-27 174.2 -0.1 198 84-290 209-437 (873)
4 KOG4194 Membrane glycoprotein 99.8 1.9E-21 4.2E-26 168.7 4.1 164 120-288 169-336 (873)
5 KOG4237 Extracellular matrix p 99.8 1.1E-21 2.3E-26 163.0 -1.4 239 43-290 35-343 (498)
6 KOG0444 Cytoskeletal regulator 99.7 4.1E-19 8.9E-24 155.8 -3.1 180 92-282 99-304 (1255)
7 KOG0617 Ras suppressor protein 99.7 1.2E-19 2.6E-24 135.0 -6.5 184 92-287 29-217 (264)
8 KOG0444 Cytoskeletal regulator 99.7 1.5E-18 3.1E-23 152.4 -1.1 184 91-286 73-285 (1255)
9 KOG0617 Ras suppressor protein 99.7 1.4E-19 3E-24 134.8 -7.8 178 63-260 33-215 (264)
10 KOG0472 Leucine-rich repeat pr 99.6 3E-17 6.6E-22 137.1 1.2 187 86-282 242-541 (565)
11 PRK15370 E3 ubiquitin-protein 99.6 5.4E-14 1.2E-18 131.2 19.5 165 97-287 200-385 (754)
12 cd00116 LRR_RI Leucine-rich re 99.6 9.7E-16 2.1E-20 131.3 5.3 191 91-284 76-293 (319)
13 cd00116 LRR_RI Leucine-rich re 99.6 8.4E-16 1.8E-20 131.7 4.6 212 65-282 25-263 (319)
14 KOG0472 Leucine-rich repeat pr 99.6 8E-18 1.7E-22 140.5 -8.0 159 120-287 133-293 (565)
15 PLN03150 hypothetical protein; 99.6 2.5E-14 5.4E-19 132.3 13.9 156 4-184 366-526 (623)
16 PRK15387 E3 ubiquitin-protein 99.6 1.7E-14 3.8E-19 134.0 11.5 82 201-289 383-465 (788)
17 PLN03210 Resistant to P. syrin 99.5 2E-13 4.3E-18 134.8 17.4 103 174-284 779-885 (1153)
18 KOG0618 Serine/threonine phosp 99.5 3.4E-16 7.4E-21 142.7 -2.3 179 92-280 306-487 (1081)
19 KOG4237 Extracellular matrix p 99.5 1.7E-15 3.8E-20 126.4 0.4 185 97-290 68-319 (498)
20 PLN03210 Resistant to P. syrin 99.5 5.3E-13 1.1E-17 131.8 17.0 85 93-184 631-715 (1153)
21 PRK15370 E3 ubiquitin-protein 99.5 1.9E-13 4.1E-18 127.6 8.8 164 96-284 220-403 (754)
22 KOG0618 Serine/threonine phosp 99.4 5.5E-15 1.2E-19 135.0 -3.6 178 97-286 242-424 (1081)
23 PRK15387 E3 ubiquitin-protein 99.4 5.5E-12 1.2E-16 117.5 14.9 17 95-111 241-257 (788)
24 KOG3207 Beta-tubulin folding c 99.3 5.7E-13 1.2E-17 112.8 2.2 188 91-284 141-341 (505)
25 COG4886 Leucine-rich repeat (L 99.3 2.4E-12 5.3E-17 113.6 6.2 182 92-288 112-296 (394)
26 KOG1259 Nischarin, modulator o 99.3 3.6E-13 7.9E-18 109.2 -0.2 132 148-286 284-416 (490)
27 KOG1909 Ran GTPase-activating 99.3 1.7E-12 3.8E-17 107.0 2.5 188 94-281 90-310 (382)
28 KOG0532 Leucine-rich repeat (L 99.2 1E-13 2.2E-18 120.9 -6.5 177 95-287 74-252 (722)
29 KOG3207 Beta-tubulin folding c 99.2 2E-12 4.3E-17 109.6 1.1 186 93-283 118-315 (505)
30 KOG1909 Ran GTPase-activating 99.2 3.4E-12 7.4E-17 105.3 1.8 216 62-283 29-284 (382)
31 PF14580 LRR_9: Leucine-rich r 99.2 1.2E-11 2.6E-16 95.3 4.3 121 123-251 18-147 (175)
32 PLN03150 hypothetical protein; 99.1 3.2E-10 7E-15 105.2 10.3 109 97-213 419-528 (623)
33 PF14580 LRR_9: Leucine-rich r 99.1 1.5E-10 3.2E-15 89.3 5.8 126 94-231 17-149 (175)
34 KOG1259 Nischarin, modulator o 99.1 1.8E-11 3.8E-16 99.5 -1.0 130 121-258 281-413 (490)
35 COG4886 Leucine-rich repeat (L 99.0 2.6E-10 5.7E-15 100.7 5.8 173 100-286 97-272 (394)
36 KOG2120 SCF ubiquitin ligase, 99.0 1E-11 2.2E-16 100.7 -4.1 176 97-279 186-373 (419)
37 KOG0532 Leucine-rich repeat (L 99.0 1.3E-11 2.9E-16 107.9 -5.5 156 121-287 72-229 (722)
38 PF13855 LRR_8: Leucine rich r 98.9 8.5E-10 1.8E-14 70.2 3.2 59 222-281 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.9 2.7E-10 5.8E-15 101.1 0.0 177 92-284 91-270 (414)
40 PF08263 LRRNT_2: Leucine rich 98.9 4E-09 8.7E-14 61.6 4.3 41 8-59 1-43 (43)
41 PF13855 LRR_8: Leucine rich r 98.9 1.6E-09 3.5E-14 68.9 2.7 61 96-160 1-61 (61)
42 KOG0531 Protein phosphatase 1, 98.7 7.6E-10 1.6E-14 98.2 -2.5 174 94-284 70-247 (414)
43 COG5238 RNA1 Ran GTPase-activa 98.7 8.8E-09 1.9E-13 82.9 3.1 217 62-284 29-287 (388)
44 KOG2982 Uncharacterized conser 98.7 5.9E-09 1.3E-13 84.9 1.9 182 94-277 69-287 (418)
45 KOG1859 Leucine-rich repeat pr 98.7 4E-10 8.7E-15 101.5 -5.8 127 149-282 165-292 (1096)
46 KOG4658 Apoptotic ATPase [Sign 98.7 1.9E-08 4.2E-13 96.0 4.3 180 95-285 544-733 (889)
47 KOG2120 SCF ubiquitin ligase, 98.5 3.3E-09 7.2E-14 86.3 -3.6 161 91-256 205-375 (419)
48 KOG2982 Uncharacterized conser 98.5 2.8E-08 6.1E-13 81.0 0.8 176 63-252 71-287 (418)
49 KOG3665 ZYG-1-like serine/thre 98.4 9.4E-08 2E-12 89.1 1.9 147 124-275 122-281 (699)
50 KOG1859 Leucine-rich repeat pr 98.4 2.5E-09 5.5E-14 96.5 -8.3 159 91-257 104-292 (1096)
51 PF12799 LRR_4: Leucine Rich r 98.4 6E-07 1.3E-11 52.5 3.8 38 245-284 2-39 (44)
52 COG5238 RNA1 Ran GTPase-activa 98.3 2E-07 4.2E-12 75.3 1.7 193 91-283 87-317 (388)
53 KOG4658 Apoptotic ATPase [Sign 98.3 3.2E-07 7E-12 87.8 3.1 95 84-184 559-653 (889)
54 KOG3665 ZYG-1-like serine/thre 98.2 9.1E-07 2E-11 82.6 4.4 135 148-284 122-265 (699)
55 KOG4579 Leucine-rich repeat (L 98.2 7.3E-08 1.6E-12 69.8 -3.7 130 150-285 29-162 (177)
56 PF12799 LRR_4: Leucine Rich r 98.2 4E-06 8.6E-11 49.0 4.2 39 222-261 1-40 (44)
57 KOG1644 U2-associated snRNP A' 98.1 3.4E-06 7.4E-11 65.3 4.8 81 98-184 44-124 (233)
58 PRK15386 type III secretion pr 98.1 1.4E-05 3.1E-10 69.4 8.8 135 94-254 50-187 (426)
59 KOG4579 Leucine-rich repeat (L 98.1 1.8E-07 3.9E-12 67.8 -3.5 135 122-262 25-164 (177)
60 KOG1644 U2-associated snRNP A' 98.0 1.4E-05 3.1E-10 61.9 6.2 108 124-236 42-154 (233)
61 KOG2739 Leucine-rich acidic nu 97.8 1.3E-05 2.8E-10 64.5 2.8 108 95-208 42-151 (260)
62 KOG2739 Leucine-rich acidic nu 97.7 2E-05 4.3E-10 63.5 2.3 68 168-236 60-130 (260)
63 PRK15386 type III secretion pr 97.6 0.00051 1.1E-08 60.0 10.2 138 119-279 47-187 (426)
64 KOG2123 Uncharacterized conser 97.5 3.8E-06 8.2E-11 68.2 -4.2 99 172-275 18-123 (388)
65 KOG1947 Leucine rich repeat pr 97.4 6E-05 1.3E-09 68.2 1.7 115 95-212 187-307 (482)
66 KOG4308 LRR-containing protein 97.4 1.6E-06 3.5E-11 77.6 -8.3 186 98-283 89-304 (478)
67 PF13306 LRR_5: Leucine rich r 97.2 0.002 4.3E-08 47.1 7.0 119 143-271 7-128 (129)
68 PF13306 LRR_5: Leucine rich r 97.0 0.0022 4.8E-08 46.9 5.9 61 90-156 6-66 (129)
69 KOG2123 Uncharacterized conser 96.7 4.1E-05 8.9E-10 62.4 -5.7 89 199-287 18-106 (388)
70 KOG1947 Leucine rich repeat pr 96.6 0.00035 7.7E-09 63.2 -1.2 62 123-184 242-306 (482)
71 KOG4308 LRR-containing protein 96.6 3.2E-05 7E-10 69.4 -7.8 168 91-258 110-304 (478)
72 smart00370 LRR Leucine-rich re 96.1 0.0045 9.8E-08 31.4 1.9 21 269-289 2-22 (26)
73 smart00369 LRR_TYP Leucine-ric 96.1 0.0045 9.8E-08 31.4 1.9 21 269-289 2-22 (26)
74 PF00560 LRR_1: Leucine Rich R 96.0 0.0026 5.6E-08 30.9 0.7 15 271-285 2-16 (22)
75 KOG4341 F-box protein containi 96.0 0.0044 9.6E-08 53.5 2.2 132 122-254 292-436 (483)
76 PF00560 LRR_1: Leucine Rich R 95.6 0.0046 9.9E-08 30.0 0.5 21 245-267 1-21 (22)
77 KOG4341 F-box protein containi 95.2 0.0096 2.1E-07 51.6 1.7 82 199-280 345-437 (483)
78 PF13504 LRR_7: Leucine rich r 95.2 0.013 2.9E-07 26.4 1.3 14 270-283 2-15 (17)
79 smart00369 LRR_TYP Leucine-ric 93.9 0.057 1.2E-06 27.2 2.1 23 243-266 1-23 (26)
80 smart00370 LRR Leucine-rich re 93.9 0.057 1.2E-06 27.2 2.1 23 243-266 1-23 (26)
81 KOG0473 Leucine-rich repeat pr 92.9 0.002 4.3E-08 51.4 -6.5 84 196-281 38-123 (326)
82 KOG3864 Uncharacterized conser 92.3 0.026 5.6E-07 44.2 -1.0 80 98-182 103-185 (221)
83 KOG3864 Uncharacterized conser 92.0 0.032 7E-07 43.7 -0.8 84 124-209 101-185 (221)
84 PF13516 LRR_6: Leucine Rich r 89.5 0.061 1.3E-06 26.5 -0.9 16 269-284 2-17 (24)
85 KOG3763 mRNA export factor TAP 85.9 0.38 8.2E-06 43.5 1.3 64 172-236 217-284 (585)
86 smart00364 LRR_BAC Leucine-ric 82.8 0.89 1.9E-05 22.9 1.3 16 270-285 3-18 (26)
87 smart00365 LRR_SD22 Leucine-ri 81.5 1.5 3.2E-05 22.2 1.8 14 269-282 2-15 (26)
88 smart00368 LRR_RI Leucine rich 79.4 1.8 3.9E-05 22.2 1.8 15 269-283 2-16 (28)
89 KOG3763 mRNA export factor TAP 76.1 1.5 3.2E-05 39.9 1.5 65 196-260 214-286 (585)
90 KOG0473 Leucine-rich repeat pr 75.3 0.065 1.4E-06 43.1 -6.3 86 145-236 39-125 (326)
91 smart00367 LRR_CC Leucine-rich 56.9 8.9 0.00019 19.0 1.5 13 268-280 1-13 (26)
92 KOG4242 Predicted myosin-I-bin 51.9 40 0.00087 30.5 5.5 19 123-141 164-182 (553)
93 KOG4242 Predicted myosin-I-bin 44.0 1.5E+02 0.0032 27.2 7.7 105 174-281 355-480 (553)
94 KOG1665 AFH1-interacting prote 27.2 1.1E+02 0.0024 24.8 3.9 13 202-214 198-210 (302)
95 TIGR00864 PCC polycystin catio 24.1 61 0.0013 36.1 2.6 32 102-137 1-32 (2740)
96 TIGR00864 PCC polycystin catio 21.1 69 0.0015 35.8 2.3 28 82-109 5-32 (2740)
97 PF06764 DUF1223: Protein of u 20.3 51 0.0011 26.2 1.0 11 2-12 8-18 (202)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.4e-30 Score=253.35 Aligned_cols=252 Identities=29% Similarity=0.395 Sum_probs=166.0
Q ss_pred cHHHHHHHHHHhhhhhccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCceEeccccCcEEeeccccccccccccccccccc
Q 022897 8 LETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLL 87 (290)
Q Consensus 8 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~~ 87 (290)
.+.|+.||++||+.+.+ + ...+.+|.. ..+|| .|.||.|+. .++|+.++++++. + ...
T Consensus 27 ~~~~~~~l~~~~~~~~~--~----~~~~~~w~~-----~~~~c-~w~gv~c~~-~~~v~~L~L~~~~----i-----~~~ 84 (968)
T PLN00113 27 HAEELELLLSFKSSIND--P----LKYLSNWNS-----SADVC-LWQGITCNN-SSRVVSIDLSGKN----I-----SGK 84 (968)
T ss_pred CHHHHHHHHHHHHhCCC--C----cccCCCCCC-----CCCCC-cCcceecCC-CCcEEEEEecCCC----c-----ccc
Confidence 56899999999999865 4 456789976 67788 999999985 5689999999875 1 111
Q ss_pred CCCcCCCCCCCcEEECCCCcccCccchhhhhhcCC----------------------CCCCcEEECCCCcCCCCchhhcc
Q 022897 88 NMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGS----------------------LKQLKILDLGCNFFNDSILPYLN 145 (290)
Q Consensus 88 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~----------------------l~~L~~L~l~~n~l~~~~~~~l~ 145 (290)
.+..+..+++|+.|++++|.+.+.+|.. .+.. +++|++|++++|.+.+.+|..++
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~---~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~ 161 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSGPIPDD---IFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIG 161 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCCcCChH---HhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHh
Confidence 1233455566666666666655444431 1223 44555555555555555565666
Q ss_pred CCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCC
Q 022897 146 TLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPN 223 (290)
Q Consensus 146 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~ 223 (290)
.+++|++|++++|.+.+..+ ..+..+++|++|++++|.+ .+.+|. .+..+++|++|++++|.++ .|..+..+++
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l--~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQL--VGQIPR-ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred cCCCCCEEECccCcccccCC-hhhhhCcCCCeeeccCCCC--cCcCCh-HHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 66666666666666655443 3556666666666666665 444554 5666667777777776665 5556666777
Q ss_pred CcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 224 LKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 224 L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
|++|++++|.+++ +..+..+++|+.|++++|.+.+.+|.. +..+++|++|++++|.+++.+|..|
T Consensus 238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeeccCCChhH
Confidence 7777777777665 556667777777777777777666665 6667777777777777777766543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=5.9e-23 Score=200.11 Aligned_cols=187 Identities=29% Similarity=0.378 Sum_probs=90.2
Q ss_pred cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897 91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA 170 (290)
Q Consensus 91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 170 (290)
.++.+++|++|++++|.+.+..|. .+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+++..+ ..+.
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~ 233 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGKIPN----SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP-YEIG 233 (968)
T ss_pred HHhcCCCCCEEECccCcccccCCh----hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC-hhHh
Confidence 345555566666665555554444 45555555555555555555555555555555555555555554333 2445
Q ss_pred cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCC
Q 022897 171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNL 246 (290)
Q Consensus 171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L 246 (290)
.+++|++|++++|.+ .+.+|. .+..+++|++|++++|.+. .|..+..+++|++|++++|.+++ +..+..+++|
T Consensus 234 ~l~~L~~L~L~~n~l--~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 310 (968)
T PLN00113 234 GLTSLNHLDLVYNNL--TGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310 (968)
T ss_pred cCCCCCEEECcCcee--ccccCh-hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence 555555555555544 333333 4444455555555554443 33344444444444444444443 3333444444
Q ss_pred CEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897 247 EALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG 286 (290)
Q Consensus 247 ~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~ 286 (290)
+.|++++|.+++.+|.. +..+++|+.|++++|.+++.+|
T Consensus 311 ~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 311 EILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred cEEECCCCccCCcCChh-HhcCCCCCEEECcCCCCcCcCC
Confidence 44444444444333333 3344444444444444443333
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.5e-22 Score=174.16 Aligned_cols=198 Identities=28% Similarity=0.349 Sum_probs=151.2
Q ss_pred ccccCCCcCCCCCCCcEEECCCCcc------------------------cCccchhhhhhcCCCCCCcEEECCCCcCCCC
Q 022897 84 ASLLNMSLFHPFEELQSLNLSDNWF------------------------RGFYENKAYDSFGSLKQLKILDLGCNFFNDS 139 (290)
Q Consensus 84 ~~~~~~~~~~~~~~L~~L~l~~n~l------------------------~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 139 (290)
+..++...|.++++|+.|+|..|.+ .....+ .|..+.++++|+|+.|+++..
T Consensus 209 ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG----~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 209 ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG----AFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc----ceeeecccceeecccchhhhh
Confidence 4445555555555666655555554 333333 566677777777777777655
Q ss_pred chhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcC
Q 022897 140 ILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQG 217 (290)
Q Consensus 140 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~ 217 (290)
--..+.++..|+.|++++|.+....+ +.....++|++|+|+.|.+ ..+++..+..+..|+.|+|+.|.++ ...+
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~-d~WsftqkL~~LdLs~N~i---~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHI-DSWSFTQKLKELDLSSNRI---TRLDEGSFRVLSQLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred hcccccccchhhhhccchhhhheeec-chhhhcccceeEecccccc---ccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence 45556677888888888888775433 4677778888888888884 4566667888888888888888887 4556
Q ss_pred CCCCCCCcEEEccCCCCCC-----ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccCC
Q 022897 218 LADLPNLKTLDLRDCGITT-----IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290 (290)
Q Consensus 218 ~~~l~~L~~L~l~~n~l~~-----~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f~ 290 (290)
+..+++|+.|+|+.|.++. ...+..+++|+.|++.+|++. .||..+|.++++|++|||.+|.|..+-|++|.
T Consensus 361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccc
Confidence 7888999999999998877 345777999999999999998 89998899999999999999999999999984
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.9e-21 Score=168.71 Aligned_cols=164 Identities=27% Similarity=0.310 Sum_probs=69.6
Q ss_pred cCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccC
Q 022897 120 FGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANL 199 (290)
Q Consensus 120 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 199 (290)
|..-.++++|+|++|.++..--..|..+.+|..|.|+.|.++. .+...|..+++|+.|+|..|.+ ..+....|..+
T Consensus 169 fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN~i---rive~ltFqgL 244 (873)
T KOG4194|consen 169 FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRNRI---RIVEGLTFQGL 244 (873)
T ss_pred CCCCCCceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhhhcchhhhhhccccce---eeehhhhhcCc
Confidence 3333344444444444433333333334444444444444432 2223444444444444444442 11111133334
Q ss_pred CCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEe
Q 022897 200 TNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILD 275 (290)
Q Consensus 200 ~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~ 275 (290)
++|+.|.|..|++. ...+|..+.++++|+|+.|+++. -.++..++.|++|++|+|.+. .|....++-.++|++|+
T Consensus 245 ~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~Ld 323 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELD 323 (873)
T ss_pred hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh-eeecchhhhcccceeEe
Confidence 44444444444443 23334444455555555555444 333444555555555555554 33322244445555555
Q ss_pred cCCCCCccccccc
Q 022897 276 LRDCGMTTIQGKI 288 (290)
Q Consensus 276 L~~n~l~~~~~~~ 288 (290)
|++|+|+...++.
T Consensus 324 Ls~N~i~~l~~~s 336 (873)
T KOG4194|consen 324 LSSNRITRLDEGS 336 (873)
T ss_pred ccccccccCChhH
Confidence 5555555544443
No 5
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=1.1e-21 Score=162.98 Aligned_cols=239 Identities=25% Similarity=0.276 Sum_probs=174.8
Q ss_pred CCCCCCCCCCC---CceEeccccCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhh
Q 022897 43 DGMPSDCCDDW---EGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDS 119 (290)
Q Consensus 43 ~~~~~~~c~~w---~gv~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 119 (290)
..|+..|.++- .-|.|+.....-++-+|+.......++.+.++.+++..|+.+++|++|+|++|+|+.+.|. +
T Consensus 35 ~~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~----A 110 (498)
T KOG4237|consen 35 SACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD----A 110 (498)
T ss_pred ccCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChH----h
Confidence 34777772254 4589987777777889999888888888999999999999999999999999999999888 8
Q ss_pred cCCCCCCcEEECCC-CcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhcc
Q 022897 120 FGSLKQLKILDLGC-NFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLAN 198 (290)
Q Consensus 120 l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 198 (290)
|.+++.|..|-+.+ |+++......|.++.+|+.|.+.-|.+... ....+..++++..|.+..|.+ ..+....+..
T Consensus 111 F~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci-r~~al~dL~~l~lLslyDn~~---q~i~~~tf~~ 186 (498)
T KOG4237|consen 111 FKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI-RQDALRDLPSLSLLSLYDNKI---QSICKGTFQG 186 (498)
T ss_pred hhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch-hHHHHHHhhhcchhcccchhh---hhhccccccc
Confidence 99998888887766 888876666777788888887777777643 334666667776666666653 2233223444
Q ss_pred CCCccEEEcCCCCCC----------------------------------------------------------------C
Q 022897 199 LTNLKELDLRGCGIT----------------------------------------------------------------T 214 (290)
Q Consensus 199 ~~~L~~L~l~~n~l~----------------------------------------------------------------~ 214 (290)
+.+++.+.+..|.+. .
T Consensus 187 l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP 266 (498)
T KOG4237|consen 187 LAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICP 266 (498)
T ss_pred hhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcCh
Confidence 444444444433200 1
Q ss_pred CcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccCC
Q 022897 215 SQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290 (290)
Q Consensus 215 ~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f~ 290 (290)
...|..+++|+.|++++|.+++ ..+|.....+++|.|..|++. .+...+|.++..|+.|+|.+|+|+...|.+|+
T Consensus 267 ~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 267 AKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred HHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 1234566788888888888887 556777778888888888876 66666688888888888888888888887774
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.70 E-value=4.1e-19 Score=155.84 Aligned_cols=180 Identities=27% Similarity=0.320 Sum_probs=109.7
Q ss_pred CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897 92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN 171 (290)
Q Consensus 92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 171 (290)
+..+..|+.|+|++|++...+. .+..-+++-+|+||+|++....-+.+.++..|-+|+|++|.+.. .|| .+..
T Consensus 99 iF~l~dLt~lDLShNqL~EvP~-----~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPP-Q~RR 171 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLREVPT-----NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPP-QIRR 171 (1255)
T ss_pred hcccccceeeecchhhhhhcch-----hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh-cCH-HHHH
Confidence 4456666666666666654322 34444555555555555543222223345555555555555432 121 3444
Q ss_pred C------------------------CCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcE
Q 022897 172 L------------------------RYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKT 226 (290)
Q Consensus 172 l------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~ 226 (290)
+ ++|+.|.+++.+- +...+|. .+..+.+|+.++++.|.+. .|+.+.++.+|+.
T Consensus 172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR-Tl~N~Pt-sld~l~NL~dvDlS~N~Lp~vPecly~l~~Lrr 249 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR-TLDNIPT-SLDDLHNLRDVDLSENNLPIVPECLYKLRNLRR 249 (1255)
T ss_pred HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc-hhhcCCC-chhhhhhhhhccccccCCCcchHHHhhhhhhhe
Confidence 4 4444444444332 1234454 5667777888888888877 6777788888888
Q ss_pred EEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCc
Q 022897 227 LDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMT 282 (290)
Q Consensus 227 L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~ 282 (290)
|++++|+|+. -...+...+|++|++|.|+++ .+|.. +..+++|+.|.+.+|+++
T Consensus 250 LNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~a-vcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 250 LNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDA-VCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred eccCcCceeeeeccHHHHhhhhhhccccchhc-cchHH-HhhhHHHHHHHhccCccc
Confidence 8888888877 334555667788888888887 67766 777788888888888664
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=1.2e-19 Score=135.05 Aligned_cols=184 Identities=23% Similarity=0.343 Sum_probs=146.4
Q ss_pred CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897 92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN 171 (290)
Q Consensus 92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 171 (290)
+.++.+++.|.+++|.++...| .+..+.+|++|++++|++. .+|..++.+++|+.|+++-|.+.- .+..|++
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vpp-----nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~--lprgfgs 100 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPP-----NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI--LPRGFGS 100 (264)
T ss_pred ccchhhhhhhhcccCceeecCC-----cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc--CccccCC
Confidence 4567788899999999987766 5778889999999999987 678888999999999999888753 5568999
Q ss_pred CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEE
Q 022897 172 LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEAL 249 (290)
Q Consensus 172 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L 249 (290)
++.|+.|++..|.+.. ..+|. .|..++.|+.|+++.|.+. .|+.++++++|+.|.+..|.+.. |..++.+..|++|
T Consensus 101 ~p~levldltynnl~e-~~lpg-nff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNE-NSLPG-NFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLREL 178 (264)
T ss_pred Cchhhhhhcccccccc-ccCCc-chhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHH
Confidence 9999999999888732 34555 6777888899999999998 78889999999999999998887 7788889999999
Q ss_pred eCCCCCCCCcccccccCCCC---CCCEEecCCCCCcccccc
Q 022897 250 DLSWNNINGSLESQGLADLP---NLKILDLRDCGMTTIQGK 287 (290)
Q Consensus 250 ~l~~n~l~~~i~~~~l~~l~---~L~~L~L~~n~l~~~~~~ 287 (290)
.+.+|.++ .+|+. ++.+. +-+.+.+.+|.....+.+
T Consensus 179 hiqgnrl~-vlppe-l~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 179 HIQGNRLT-VLPPE-LANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred hcccceee-ecChh-hhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 99999998 77776 54432 234555666665544443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=1.5e-18 Score=152.44 Aligned_cols=184 Identities=29% Similarity=0.329 Sum_probs=134.5
Q ss_pred cCCCCCCCcEEECCCCcccCc-cchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhc
Q 022897 91 LFHPFEELQSLNLSDNWFRGF-YENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGL 169 (290)
Q Consensus 91 ~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 169 (290)
.+..++.|+.+.+..|++... +|. .+..+..|+.||||.|++. ..|..+..-+++.+|+|++|++.. +|.+.+
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~----diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lf 146 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPT----DIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIET-IPNSLF 146 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCc----hhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCcccc-CCchHH
Confidence 356788999999999988543 233 6789999999999999997 688888888999999999999974 576788
Q ss_pred ccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC---------------------------CCcCCCCCC
Q 022897 170 ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT---------------------------TSQGLADLP 222 (290)
Q Consensus 170 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---------------------------~~~~~~~l~ 222 (290)
.+++.|-.|++++|.+ ..+|+ .+..+..|++|.|++|.+. +|..+..+.
T Consensus 147 inLtDLLfLDLS~NrL---e~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~ 222 (1255)
T KOG0444|consen 147 INLTDLLFLDLSNNRL---EMLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH 222 (1255)
T ss_pred HhhHhHhhhccccchh---hhcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhh
Confidence 9999999999999994 56777 6667777777777777543 344455555
Q ss_pred CCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897 223 NLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG 286 (290)
Q Consensus 223 ~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~ 286 (290)
+|..++++.|.+.. |+.+.++++|+.|+||+|.++ .+... .+.-.+|+.|+|+.|+++..|.
T Consensus 223 NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~-~~~W~~lEtLNlSrNQLt~LP~ 285 (1255)
T KOG0444|consen 223 NLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-ELNMT-EGEWENLETLNLSRNQLTVLPD 285 (1255)
T ss_pred hhhhccccccCCCcchHHHhhhhhhheeccCcCcee-eeecc-HHHHhhhhhhccccchhccchH
Confidence 66666666666665 556666666666666666666 34433 4444566666666666665543
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=1.4e-19 Score=134.76 Aligned_cols=178 Identities=24% Similarity=0.327 Sum_probs=115.6
Q ss_pred CcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchh
Q 022897 63 RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP 142 (290)
Q Consensus 63 ~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 142 (290)
..++++.|+++. +... +..+..+.+|+.|++.+|++...+. .++.+++|++|+++.|++. .+|.
T Consensus 33 s~ITrLtLSHNK---------l~~v-ppnia~l~nlevln~~nnqie~lp~-----~issl~klr~lnvgmnrl~-~lpr 96 (264)
T KOG0617|consen 33 SNITRLTLSHNK---------LTVV-PPNIAELKNLEVLNLSNNQIEELPT-----SISSLPKLRILNVGMNRLN-ILPR 96 (264)
T ss_pred hhhhhhhcccCc---------eeec-CCcHHHhhhhhhhhcccchhhhcCh-----hhhhchhhhheecchhhhh-cCcc
Confidence 456666666665 1222 2336667777777777777765543 5677777777777777765 5677
Q ss_pred hccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCC
Q 022897 143 YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADL 221 (290)
Q Consensus 143 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l 221 (290)
.|+.+|.|+.||+.+|.+.....+..|..+..|+.|++++|.+ ..+|. .++++++|+.|.+..|.+. .|..++.+
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf---e~lp~-dvg~lt~lqil~lrdndll~lpkeig~l 172 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF---EILPP-DVGKLTNLQILSLRDNDLLSLPKEIGDL 172 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc---ccCCh-hhhhhcceeEEeeccCchhhCcHHHHHH
Confidence 7777777777777777777666666666677777777777774 34555 6777777777777777665 67777777
Q ss_pred CCCcEEEccCCCCCC-ccccccCC---CCCEEeCCCCCCCCcc
Q 022897 222 PNLKTLDLRDCGITT-IQGLAKLK---NLEALDLSWNNINGSL 260 (290)
Q Consensus 222 ~~L~~L~l~~n~l~~-~~~l~~~~---~L~~L~l~~n~l~~~i 260 (290)
..|++|++.+|.++. |+.++.+. +-+++.+..|.....|
T Consensus 173 t~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 173 TRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred HHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 777777777777776 54444321 2233444555444333
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=3e-17 Score=137.12 Aligned_cols=187 Identities=25% Similarity=0.310 Sum_probs=124.4
Q ss_pred ccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC--
Q 022897 86 LLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS-- 163 (290)
Q Consensus 86 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-- 163 (290)
.++......++++..||+.+|++...+. .+..+++|++||+++|.++ .+|..++++ +|+.|.+.+|.+...
T Consensus 242 ~lpae~~~~L~~l~vLDLRdNklke~Pd-----e~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr 314 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDNKLKEVPD-----EICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRR 314 (565)
T ss_pred hhHHHHhcccccceeeeccccccccCch-----HHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHH
Confidence 3444445567777777887777765533 4566777788888888777 466677777 788888877765310
Q ss_pred -----------------------------------cch---hhcccCCCCC--------------------------eee
Q 022897 164 -----------------------------------GTM---QGLANLRYLQ--------------------------VLD 179 (290)
Q Consensus 164 -----------------------------------~~~---~~~~~l~~L~--------------------------~L~ 179 (290)
.+. .....+...+ ..+
T Consensus 315 ~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vn 394 (565)
T KOG0472|consen 315 EIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVN 394 (565)
T ss_pred HHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEe
Confidence 000 0000011122 223
Q ss_pred CCCCCCCC---------------------CCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC-
Q 022897 180 LSWNENIT---------------------SGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT- 236 (290)
Q Consensus 180 l~~n~~~~---------------------~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~- 236 (290)
++.|++.. .+ .++..+..+++|..|++++|.+- .|..++.+..|+.|+++.|+|..
T Consensus 395 fskNqL~elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~l 473 (565)
T KOG0472|consen 395 FSKNQLCELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRML 473 (565)
T ss_pred cccchHhhhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccc
Confidence 33332210 01 11113666788888888888776 77777777788888888887644
Q ss_pred ------------------------ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCc
Q 022897 237 ------------------------IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMT 282 (290)
Q Consensus 237 ------------------------~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~ 282 (290)
++.+..+.+|.+||+.+|.+. .+|+. ++++.+|++|+|++|+|.
T Consensus 474 P~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~-LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 474 PECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPI-LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChh-hccccceeEEEecCCccC
Confidence 223667889999999999998 89998 999999999999999998
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.61 E-value=5.4e-14 Score=131.20 Aligned_cols=165 Identities=27% Similarity=0.325 Sum_probs=87.8
Q ss_pred CCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCC
Q 022897 97 ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ 176 (290)
Q Consensus 97 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 176 (290)
.|+.|++++|.++..+. .+ .++|++|++++|.++ .+|..+. ++|+.|++++|.+.. ++. .+. .+|+
T Consensus 200 ~L~~L~Ls~N~LtsLP~-----~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~-LP~-~l~--s~L~ 265 (754)
T PRK15370 200 QITTLILDNNELKSLPE-----NL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITE-LPE-RLP--SALQ 265 (754)
T ss_pred CCcEEEecCCCCCcCCh-----hh--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCc-CCh-hHh--CCCC
Confidence 57777777777765432 12 136777777777665 3444332 356666666666552 222 221 3456
Q ss_pred eeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCC-------------------CCCCCcEEEccCCCCCC
Q 022897 177 VLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLA-------------------DLPNLKTLDLRDCGITT 236 (290)
Q Consensus 177 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~-------------------~l~~L~~L~l~~n~l~~ 236 (290)
.|++++|.+ ..+|. .+ .++|++|++++|.++ +|..+. ..++|+.|++++|.++.
T Consensus 266 ~L~Ls~N~L---~~LP~-~l--~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 266 SLDLFHNKI---SCLPE-NL--PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS 339 (754)
T ss_pred EEECcCCcc---Ccccc-cc--CCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc
Confidence 666665554 12332 11 134555555555554 222110 11355666666666555
Q ss_pred -ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccc
Q 022897 237 -IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGK 287 (290)
Q Consensus 237 -~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~ 287 (290)
+..+ .++|+.|++++|.++ .+|.. + .++|+.|+|++|+|+.+++.
T Consensus 340 LP~~l--~~sL~~L~Ls~N~L~-~LP~~-l--p~~L~~LdLs~N~Lt~LP~~ 385 (754)
T PRK15370 340 LPASL--PPELQVLDVSKNQIT-VLPET-L--PPTITTLDVSRNALTNLPEN 385 (754)
T ss_pred CChhh--cCcccEEECCCCCCC-cCChh-h--cCCcCEEECCCCcCCCCCHh
Confidence 2222 246777777777776 45554 2 25677777777777766543
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.59 E-value=9.7e-16 Score=131.27 Aligned_cols=191 Identities=32% Similarity=0.330 Sum_probs=130.6
Q ss_pred cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCC----chhhccCC-CCCCEEEccCCCCCCCcc
Q 022897 91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDS----ILPYLNTL-TSLTTLILYSNSIEGSGT 165 (290)
Q Consensus 91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l-~~L~~L~l~~n~~~~~~~ 165 (290)
.+..+++|++|++++|.+.+..+......... +.|++|++++|.+.+. +...+..+ ++|++|++++|.+++...
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 45567889999999888876544422222233 5699999998888742 23344566 888999999998875322
Q ss_pred ---hhhcccCCCCCeeeCCCCCCCCCC--ccchhhhccCCCccEEEcCCCCCC------CCcCCCCCCCCcEEEccCCCC
Q 022897 166 ---MQGLANLRYLQVLDLSWNENITSG--SLTRLGLANLTNLKELDLRGCGIT------TSQGLADLPNLKTLDLRDCGI 234 (290)
Q Consensus 166 ---~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~------~~~~~~~l~~L~~L~l~~n~l 234 (290)
...+..+++|++|++++|.+...+ .++. .+..+++|++|++++|.+. ....+..+++|++|++++|.+
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAE-GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH-HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 224556678999999988873211 1222 3455678999999998876 334566778899999999988
Q ss_pred CC--ccccc-----cCCCCCEEeCCCCCCCC----cccccccCCCCCCCEEecCCCCCccc
Q 022897 235 TT--IQGLA-----KLKNLEALDLSWNNING----SLESQGLADLPNLKILDLRDCGMTTI 284 (290)
Q Consensus 235 ~~--~~~l~-----~~~~L~~L~l~~n~l~~----~i~~~~l~~l~~L~~L~L~~n~l~~~ 284 (290)
++ +..+. ..+.|++|++++|.+++ .+... +..+++|+++++++|.++..
T Consensus 234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 234 TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCCCcHH
Confidence 86 22221 23789999999998872 22233 55668899999999988855
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.59 E-value=8.4e-16 Score=131.68 Aligned_cols=212 Identities=29% Similarity=0.285 Sum_probs=150.9
Q ss_pred EEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccC--ccchhhhhhcCCCCCCcEEECCCCcCCCCchh
Q 022897 65 VMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRG--FYENKAYDSFGSLKQLKILDLGCNFFNDSILP 142 (290)
Q Consensus 65 v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 142 (290)
++.+++.++. +...+...+ ...+...+.+++++++++.+.+ .....+...+..+++|++|++++|.+.+..+.
T Consensus 25 L~~l~l~~~~----l~~~~~~~i-~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 25 LQVLRLEGNT----LGEEAAKAL-ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred ccEEeecCCC----CcHHHHHHH-HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 6677777766 222222222 2335567889999999988763 11123334677899999999999999876666
Q ss_pred hccCCCC---CCEEEccCCCCCCCcc---hhhcccC-CCCCeeeCCCCCCCCCC--ccchhhhccCCCccEEEcCCCCCC
Q 022897 143 YLNTLTS---LTTLILYSNSIEGSGT---MQGLANL-RYLQVLDLSWNENITSG--SLTRLGLANLTNLKELDLRGCGIT 213 (290)
Q Consensus 143 ~l~~l~~---L~~L~l~~n~~~~~~~---~~~~~~l-~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~ 213 (290)
.+..+.. |++|++++|.+.+... ...+..+ ++|+.|++++|.+...+ .+.. .+..+++|++|++++|.++
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcCCCCc
Confidence 6655555 9999999999875322 1245566 89999999999973211 1222 4667789999999999987
Q ss_pred ------CCcCCCCCCCCcEEEccCCCCCC------ccccccCCCCCEEeCCCCCCCCccccccc----CCCCCCCEEecC
Q 022897 214 ------TSQGLADLPNLKTLDLRDCGITT------IQGLAKLKNLEALDLSWNNINGSLESQGL----ADLPNLKILDLR 277 (290)
Q Consensus 214 ------~~~~~~~l~~L~~L~l~~n~l~~------~~~l~~~~~L~~L~l~~n~l~~~i~~~~l----~~l~~L~~L~L~ 277 (290)
.+..+...++|++|++++|.+++ ...+..+++|++|++++|.+++....... ...+.|++|+++
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence 23345566799999999999986 23466788999999999999853332211 224799999999
Q ss_pred CCCCc
Q 022897 278 DCGMT 282 (290)
Q Consensus 278 ~n~l~ 282 (290)
+|.++
T Consensus 259 ~n~i~ 263 (319)
T cd00116 259 CNDIT 263 (319)
T ss_pred CCCCC
Confidence 99997
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.58 E-value=8e-18 Score=140.53 Aligned_cols=159 Identities=25% Similarity=0.275 Sum_probs=106.9
Q ss_pred cCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccC
Q 022897 120 FGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANL 199 (290)
Q Consensus 120 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 199 (290)
++.+..|..++..+|+++ ..|+.++.+.+|..+++.+|.+... ++ ..-.++.|++++...|. .+.+|+ .++.+
T Consensus 133 i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~-~~i~m~~L~~ld~~~N~---L~tlP~-~lg~l 205 (565)
T KOG0472|consen 133 IGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PE-NHIAMKRLKHLDCNSNL---LETLPP-ELGGL 205 (565)
T ss_pred HHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC-CH-HHHHHHHHHhcccchhh---hhcCCh-hhcch
Confidence 334444444444444444 3444444555555555555555432 22 22236777788877777 456776 77888
Q ss_pred CCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCC-c-cccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecC
Q 022897 200 TNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITT-I-QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLR 277 (290)
Q Consensus 200 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~ 277 (290)
.+|..|++..|++...+.|..+..|.+|+++.|++.. + +..++++++.+||+..|+++ ++|.+ +.-+.+|.+||++
T Consensus 206 ~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde-~clLrsL~rLDlS 283 (565)
T KOG0472|consen 206 ESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE-ICLLRSLERLDLS 283 (565)
T ss_pred hhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchH-HHHhhhhhhhccc
Confidence 8888888888888855577788888888888888777 3 23557888888888888887 67777 6677888888888
Q ss_pred CCCCcccccc
Q 022897 278 DCGMTTIQGK 287 (290)
Q Consensus 278 ~n~l~~~~~~ 287 (290)
+|.|++.+++
T Consensus 284 NN~is~Lp~s 293 (565)
T KOG0472|consen 284 NNDISSLPYS 293 (565)
T ss_pred CCccccCCcc
Confidence 8888887765
No 15
>PLN03150 hypothetical protein; Provisional
Probab=99.58 E-value=2.5e-14 Score=132.33 Aligned_cols=156 Identities=31% Similarity=0.347 Sum_probs=94.0
Q ss_pred CccccHHHHHHHHHHhhhhhccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCceEeccc--c--CcEEeeccccccccccc
Q 022897 4 YKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNAT--T--RRVMQLSLTYTERLNYY 79 (290)
Q Consensus 4 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~c~~~--~--~~v~~l~l~~~~~l~~l 79 (290)
...+.+.|+.||+.+|+.+.. +. ..+|.+ + .|....| .|.||.|... . ..++.++|+++. +
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~--~~------~~~W~g-~-~C~p~~~-~w~Gv~C~~~~~~~~~~v~~L~L~~n~----L 430 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGL--PL------RFGWNG-D-PCVPQQH-PWSGADCQFDSTKGKWFIDGLGLDNQG----L 430 (623)
T ss_pred ccccCchHHHHHHHHHHhcCC--cc------cCCCCC-C-CCCCccc-ccccceeeccCCCCceEEEEEECCCCC----c
Confidence 345677899999999999865 31 247974 1 1222234 7999999531 1 135566666554 1
Q ss_pred ccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCC
Q 022897 80 DRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNS 159 (290)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 159 (290)
....+..+..+++|+.|+|++|.+.+.+|. .+..++.|+.|+|++|.+++.+|..++.+++|++|+|++|.
T Consensus 431 -----~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 431 -----RGFIPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred -----cccCCHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 112233455666666666666666666555 56666666666666666666666666666666666666666
Q ss_pred CCCCcchhhccc-CCCCCeeeCCCCC
Q 022897 160 IEGSGTMQGLAN-LRYLQVLDLSWNE 184 (290)
Q Consensus 160 ~~~~~~~~~~~~-l~~L~~L~l~~n~ 184 (290)
+++.+|. .+.. ..++..+++.+|.
T Consensus 502 l~g~iP~-~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 502 LSGRVPA-ALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ccccCCh-HHhhccccCceEEecCCc
Confidence 6665553 2322 2344555665554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=1.7e-14 Score=133.98 Aligned_cols=82 Identities=22% Similarity=0.233 Sum_probs=57.5
Q ss_pred CccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCC
Q 022897 201 NLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDC 279 (290)
Q Consensus 201 ~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n 279 (290)
+|+.|++++|.++ +|.. .++|+.|++++|.++..+.+ ..+|+.|++++|.++ .+|.. +..+++|+.|+|++|
T Consensus 383 ~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt-~LP~s-l~~L~~L~~LdLs~N 455 (788)
T PRK15387 383 GLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLT-RLPES-LIHLSSETTVNLEGN 455 (788)
T ss_pred ccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCccc-ccChH-HhhccCCCeEECCCC
Confidence 4566666666665 2321 24677777777777663322 245777888888887 78877 788999999999999
Q ss_pred CCcccccccC
Q 022897 280 GMTTIQGKIF 289 (290)
Q Consensus 280 ~l~~~~~~~f 289 (290)
+|++.++..+
T Consensus 456 ~Ls~~~~~~L 465 (788)
T PRK15387 456 PLSERTLQAL 465 (788)
T ss_pred CCCchHHHHH
Confidence 9998876543
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.55 E-value=2e-13 Score=134.82 Aligned_cols=103 Identities=26% Similarity=0.440 Sum_probs=53.0
Q ss_pred CCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCC-CC-CCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEe
Q 022897 174 YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCG-IT-TSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALD 250 (290)
Q Consensus 174 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~-~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~ 250 (290)
+|+.|++++|.. ...+|. .++++++|+.|++++|. +. +|..+ .+++|+.|++++|.... .+. ...+|+.|+
T Consensus 779 sL~~L~Ls~n~~--l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~ 852 (1153)
T PLN03210 779 SLTRLFLSDIPS--LVELPS-SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLN 852 (1153)
T ss_pred cchheeCCCCCC--ccccCh-hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeE
Confidence 344444444443 334444 45556666666666553 22 33322 44555555555543221 111 124566666
Q ss_pred CCCCCCCCcccccccCCCCCCCEEecCCC-CCccc
Q 022897 251 LSWNNINGSLESQGLADLPNLKILDLRDC-GMTTI 284 (290)
Q Consensus 251 l~~n~l~~~i~~~~l~~l~~L~~L~L~~n-~l~~~ 284 (290)
|++|.++ .+|.. +..+++|+.|+|++| +++++
T Consensus 853 Ls~n~i~-~iP~s-i~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 853 LSRTGIE-EVPWW-IEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred CCCCCCc-cChHH-HhcCCCCCEEECCCCCCcCcc
Confidence 6666666 56665 666777777777663 44443
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.54 E-value=3.4e-16 Score=142.73 Aligned_cols=179 Identities=31% Similarity=0.413 Sum_probs=126.2
Q ss_pred CCCCCCCcEEECCCCcccCccchhhhhhcCCCCC-CcEEECCCCcCCCCchhh-ccCCCCCCEEEccCCCCCCCcchhhc
Q 022897 92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQ-LKILDLGCNFFNDSILPY-LNTLTSLTTLILYSNSIEGSGTMQGL 169 (290)
Q Consensus 92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~ 169 (290)
...++.|++|+|..|++...++. .|..... |+.|+.+.|.+.. .|.. =..++.|+.|++.+|.+++...+ .+
T Consensus 306 le~~~sL~tLdL~~N~L~~lp~~----~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l 379 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSNNLPSLPDN----FLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFP-VL 379 (1081)
T ss_pred ccccceeeeeeehhccccccchH----HHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchh-hh
Confidence 44455666666666665544332 2222222 4444444444432 1211 11356788888888988876554 78
Q ss_pred ccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCCccccccCCCCCE
Q 022897 170 ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEA 248 (290)
Q Consensus 170 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~ 248 (290)
...+.|+.|++++|. .+.+|...+.++..|++|+|++|+++ +|..+..++.|++|...+|++...+.+..+++|+.
T Consensus 380 ~~~~hLKVLhLsyNr---L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~ 456 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNR---LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKV 456 (1081)
T ss_pred ccccceeeeeecccc---cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceE
Confidence 888899999999998 45677778888899999999999998 78888889999999999999988668888999999
Q ss_pred EeCCCCCCCCcccccccCCCCCCCEEecCCCC
Q 022897 249 LDLSWNNINGSLESQGLADLPNLKILDLRDCG 280 (290)
Q Consensus 249 L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~ 280 (290)
+|++.|.++....+. .-.-++|++||+++|.
T Consensus 457 lDlS~N~L~~~~l~~-~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTLPE-ALPSPNLKYLDLSGNT 487 (1081)
T ss_pred Eecccchhhhhhhhh-hCCCcccceeeccCCc
Confidence 999999988433332 2222789999999985
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=1.7e-15 Score=126.37 Aligned_cols=185 Identities=26% Similarity=0.317 Sum_probs=148.4
Q ss_pred CCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccC-CCCCCCcchhhcccCCCC
Q 022897 97 ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS-NSIEGSGTMQGLANLRYL 175 (290)
Q Consensus 97 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~L 175 (290)
.-.+++|..|.|+..++. +|+.+++|+.|||++|.++..-|..|.+++.|..|.+.+ |.++. ++...|..+..|
T Consensus 68 ~tveirLdqN~I~~iP~~----aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~-l~k~~F~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPG----AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD-LPKGAFGGLSSL 142 (498)
T ss_pred cceEEEeccCCcccCChh----hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh-hhhhHhhhHHHH
Confidence 467899999999999888 999999999999999999999999999999998887777 88875 466789999999
Q ss_pred CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCc-CCCCCCCCcEEEccCCCCCC-----------------
Q 022897 176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQ-GLADLPNLKTLDLRDCGITT----------------- 236 (290)
Q Consensus 176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~~n~l~~----------------- 236 (290)
+.|.+.-|++ ..+....+..++++..|.+..|.+. ++. .+..+.+++.+.+..|.+..
T Consensus 143 qrLllNan~i---~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie 219 (498)
T KOG4237|consen 143 QRLLLNANHI---NCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE 219 (498)
T ss_pred HHHhcChhhh---cchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence 9999999995 4555568999999999999999988 444 67777788888777776211
Q ss_pred -----------------------------------------------ccccccCCCCCEEeCCCCCCCCcccccccCCCC
Q 022897 237 -----------------------------------------------IQGLAKLKNLEALDLSWNNINGSLESQGLADLP 269 (290)
Q Consensus 237 -----------------------------------------------~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~ 269 (290)
...|+.+++|+.|+|++|+++ .|....|.+..
T Consensus 220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a 298 (498)
T KOG4237|consen 220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAA 298 (498)
T ss_pred cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchh
Confidence 012556677888888888887 45555588888
Q ss_pred CCCEEecCCCCCcccccccCC
Q 022897 270 NLKILDLRDCGMTTIQGKIFK 290 (290)
Q Consensus 270 ~L~~L~L~~n~l~~~~~~~f~ 290 (290)
.+++|.|..|+|..+-..+|+
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~ 319 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQ 319 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhh
Confidence 888888888887766655553
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.51 E-value=5.3e-13 Score=131.82 Aligned_cols=85 Identities=19% Similarity=0.110 Sum_probs=44.6
Q ss_pred CCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccC
Q 022897 93 HPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANL 172 (290)
Q Consensus 93 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l 172 (290)
..+++|+.|+++++.....+| .+..+++|++|++++|.....+|..+..+++|+.|++++|......+. .+ .+
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i-~l 703 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP-----DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GI-NL 703 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC-----ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cC-CC
Confidence 445566666665544333333 244556666666666554445566666666666666666543333332 11 44
Q ss_pred CCCCeeeCCCCC
Q 022897 173 RYLQVLDLSWNE 184 (290)
Q Consensus 173 ~~L~~L~l~~n~ 184 (290)
++|+.|++++|.
T Consensus 704 ~sL~~L~Lsgc~ 715 (1153)
T PLN03210 704 KSLYRLNLSGCS 715 (1153)
T ss_pred CCCCEEeCCCCC
Confidence 555555555554
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=1.9e-13 Score=127.58 Aligned_cols=164 Identities=22% Similarity=0.291 Sum_probs=89.0
Q ss_pred CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897 96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL 175 (290)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 175 (290)
.+|++|++++|.++..+ . .+. ..|+.|++++|.+. .+|..+. .+|+.|++++|.++. ++ ..+. .+|
T Consensus 220 ~nL~~L~Ls~N~LtsLP-~----~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP-~~l~--~sL 285 (754)
T PRK15370 220 GNIKTLYANSNQLTSIP-A----TLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LP-ENLP--EEL 285 (754)
T ss_pred cCCCEEECCCCccccCC-h----hhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cc-cccC--CCC
Confidence 47888888888877542 2 221 24555566555554 3343332 345555555555542 12 1111 244
Q ss_pred CeeeCCCCCCCCC------------------CccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC
Q 022897 176 QVLDLSWNENITS------------------GSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT 236 (290)
Q Consensus 176 ~~L~l~~n~~~~~------------------~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~ 236 (290)
+.|++++|.+... ..+|. .-.++|+.|++++|.++ +|..+ .++|+.|++++|.++.
T Consensus 286 ~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~---~l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~ 360 (754)
T PRK15370 286 RYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPE---TLPPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITV 360 (754)
T ss_pred cEEECCCCccccCcccchhhHHHHHhcCCccccCCc---cccccceeccccCCccccCChhh--cCcccEEECCCCCCCc
Confidence 5555554443111 11221 11246777777777776 44433 2578888888887776
Q ss_pred -ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccc
Q 022897 237 -IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284 (290)
Q Consensus 237 -~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~ 284 (290)
|..+ .++|+.|++++|.++ .+|.. +. ..|+.|++++|++++.
T Consensus 361 LP~~l--p~~L~~LdLs~N~Lt-~LP~~-l~--~sL~~LdLs~N~L~~L 403 (754)
T PRK15370 361 LPETL--PPTITTLDVSRNALT-NLPEN-LP--AALQIMQASRNNLVRL 403 (754)
T ss_pred CChhh--cCCcCEEECCCCcCC-CCCHh-HH--HHHHHHhhccCCcccC
Confidence 3333 256778888888777 56654 22 2466666666666644
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.42 E-value=5.5e-15 Score=134.98 Aligned_cols=178 Identities=28% Similarity=0.328 Sum_probs=106.6
Q ss_pred CCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCC
Q 022897 97 ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ 176 (290)
Q Consensus 97 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 176 (290)
+|++++++.|++++.+ + .+..+.+|+.++...|++. .+|..+....+|+.|.+..|.+.-. + .....++.|+
T Consensus 242 nl~~~dis~n~l~~lp-~----wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yi-p-~~le~~~sL~ 313 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLP-E----WIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYI-P-PFLEGLKSLR 313 (1081)
T ss_pred cceeeecchhhhhcch-H----HHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhC-C-Ccccccceee
Confidence 4555555555554443 2 4455555555555555553 3444444555555555555554321 1 1344456666
Q ss_pred eeeCCCCCCCCCCccchhhhccCCC-ccEEEcCCCCCCCCcCC--CCCCCCcEEEccCCCCCC--ccccccCCCCCEEeC
Q 022897 177 VLDLSWNENITSGSLTRLGLANLTN-LKELDLRGCGITTSQGL--ADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDL 251 (290)
Q Consensus 177 ~L~l~~n~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~--~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l 251 (290)
+|++..|.+ ..+|...+..... |+.|+.+.|++...+.. ...+.|+.|.+.+|.+++ ++.+.++++|++|+|
T Consensus 314 tLdL~~N~L---~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 314 TLDLQSNNL---PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL 390 (1081)
T ss_pred eeeehhccc---cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence 666666663 3444433333332 45555555555422222 234567888888888888 777888888888888
Q ss_pred CCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897 252 SWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG 286 (290)
Q Consensus 252 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~ 286 (290)
++|++. .+|...+.+++.|++|+||+|+++.++.
T Consensus 391 syNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~ 424 (1081)
T KOG0618|consen 391 SYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPD 424 (1081)
T ss_pred cccccc-cCCHHHHhchHHhHHHhcccchhhhhhH
Confidence 888887 7777777888888888888888887653
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=5.5e-12 Score=117.54 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=11.2
Q ss_pred CCCCcEEECCCCcccCc
Q 022897 95 FEELQSLNLSDNWFRGF 111 (290)
Q Consensus 95 ~~~L~~L~l~~n~l~~~ 111 (290)
.++|++|++++|+++..
T Consensus 241 p~~Lk~LdLs~N~LtsL 257 (788)
T PRK15387 241 PPELRTLEVSGNQLTSL 257 (788)
T ss_pred CCCCcEEEecCCccCcc
Confidence 35677777777776644
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=5.7e-13 Score=112.83 Aligned_cols=188 Identities=27% Similarity=0.284 Sum_probs=123.7
Q ss_pred cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhc-cCCCCCCEEEccCCCCCCCcchhhc
Q 022897 91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL-NTLTSLTTLILYSNSIEGSGTMQGL 169 (290)
Q Consensus 91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~ 169 (290)
....+++++.|+|+.|-+....+. .+-...+++|+.|+++.|.+........ ..++.|+.|.++.|.++........
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v--~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~ 218 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPV--LKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWIL 218 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHH--HHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHH
Confidence 456678888888888776544322 2234677888888888887653222211 2467788888888888755455556
Q ss_pred ccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CC--cCCCCCCCCcEEEccCCCCCC---ccc----
Q 022897 170 ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TS--QGLADLPNLKTLDLRDCGITT---IQG---- 239 (290)
Q Consensus 170 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~l~~n~l~~---~~~---- 239 (290)
..+++|+.|++..|.. .. +.......++.|+.|+|++|.+- .+ .....++.|+.|+++.+.+++ ++.
T Consensus 219 ~~fPsl~~L~L~~N~~--~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~ 295 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEI--IL-IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD 295 (505)
T ss_pred HhCCcHHHhhhhcccc--cc-eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchh
Confidence 6778888888888852 21 12224455677888888888776 32 456777888888888888777 333
Q ss_pred -cccCCCCCEEeCCCCCCCCcccc-cccCCCCCCCEEecCCCCCccc
Q 022897 240 -LAKLKNLEALDLSWNNINGSLES-QGLADLPNLKILDLRDCGMTTI 284 (290)
Q Consensus 240 -l~~~~~L~~L~l~~n~l~~~i~~-~~l~~l~~L~~L~L~~n~l~~~ 284 (290)
...+++|+.|++..|++.+ .+. .-+..+++|++|.+..|+++..
T Consensus 296 kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhcccccceeeecccCcccc-ccccchhhccchhhhhhccccccccc
Confidence 3557788888888888852 222 1144567778888888877654
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.31 E-value=2.4e-12 Score=113.60 Aligned_cols=182 Identities=35% Similarity=0.422 Sum_probs=144.7
Q ss_pred CCCCCCCcEEECCCCcccCccchhhhhhcCCCC-CCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897 92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLK-QLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA 170 (290)
Q Consensus 92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 170 (290)
+..++.++.|++.+|.++...+ ...... +|+.|+++.|.+. .+|..+..++.|+.|++++|+++.. + ....
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~-----~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l-~-~~~~ 183 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPP-----LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL-P-KLLS 183 (394)
T ss_pred hhcccceeEEecCCcccccCcc-----ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhh-h-hhhh
Confidence 4445678889999988887655 344453 8999999999987 4556678899999999999998763 2 2344
Q ss_pred cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCC-CCCCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCE
Q 022897 171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCG-ITTSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEA 248 (290)
Q Consensus 171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~ 248 (290)
..+.|+.|++++|.+ ..+|. .......|++|.+++|. +..+..+..+.++..+.+.+|++.. +..++.++.++.
T Consensus 184 ~~~~L~~L~ls~N~i---~~l~~-~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~ 259 (394)
T COG4886 184 NLSNLNNLDLSGNKI---SDLPP-EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLET 259 (394)
T ss_pred hhhhhhheeccCCcc---ccCch-hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccce
Confidence 778999999999984 45665 34556669999999994 4577888889999999999999888 778888899999
Q ss_pred EeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccccc
Q 022897 249 LDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKI 288 (290)
Q Consensus 249 L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 288 (290)
|++++|.++ .++. +..+.+++.|++++|.+...+|..
T Consensus 260 L~~s~n~i~-~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 260 LDLSNNQIS-SISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ecccccccc-cccc--ccccCccCEEeccCccccccchhh
Confidence 999999998 6666 778899999999999998877653
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.29 E-value=3.6e-13 Score=109.19 Aligned_cols=132 Identities=34% Similarity=0.318 Sum_probs=108.4
Q ss_pred CCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcE
Q 022897 148 TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKT 226 (290)
Q Consensus 148 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~ 226 (290)
..|+++||++|.++.. .++..-++.++.|++++|.+.. +. .+..+++|+.|+|++|.++ ...+-.++.+++.
T Consensus 284 q~LtelDLS~N~I~~i--DESvKL~Pkir~L~lS~N~i~~---v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 284 QELTELDLSGNLITQI--DESVKLAPKLRRLILSQNRIRT---VQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred hhhhhccccccchhhh--hhhhhhccceeEEeccccceee---eh--hhhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 4688999999998752 2456677899999999999633 22 5788899999999999998 4455568889999
Q ss_pred EEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897 227 LDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG 286 (290)
Q Consensus 227 L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~ 286 (290)
|.+++|.+.+...+.++-+|..||+++|++...-....++++|.|+++.|.+|++.+++.
T Consensus 357 L~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 357 LKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred eehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 999999999999999999999999999998732222338899999999999999988764
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=1.7e-12 Score=107.03 Aligned_cols=188 Identities=26% Similarity=0.290 Sum_probs=115.8
Q ss_pred CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchh-------------hccCCCCCCEEEccCCCC
Q 022897 94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP-------------YLNTLTSLTTLILYSNSI 160 (290)
Q Consensus 94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-------------~l~~l~~L~~L~l~~n~~ 160 (290)
.+++|++|+||+|.+....+..+.+-+..+..|++|.|.+|.+...-.. ....-+.|+++...+|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 4556777777777766555544444455667777777777765421111 122345677777777766
Q ss_pred CCCc---chhhcccCCCCCeeeCCCCCCCCCCc-cchhhhccCCCccEEEcCCCCCC------CCcCCCCCCCCcEEEcc
Q 022897 161 EGSG---TMQGLANLRYLQVLDLSWNENITSGS-LTRLGLANLTNLKELDLRGCGIT------TSQGLADLPNLKTLDLR 230 (290)
Q Consensus 161 ~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~------~~~~~~~l~~L~~L~l~ 230 (290)
.... ....++..+.|+.+.+..|.+...|. +-...+..+++|+.|+|..|.++ ....+..+++|++|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 4321 12345566777777777777644433 22346777788888888888776 34556667778888888
Q ss_pred CCCCCC------cccc-ccCCCCCEEeCCCCCCCCc---ccccccCCCCCCCEEecCCCCC
Q 022897 231 DCGITT------IQGL-AKLKNLEALDLSWNNINGS---LESQGLADLPNLKILDLRDCGM 281 (290)
Q Consensus 231 ~n~l~~------~~~l-~~~~~L~~L~l~~n~l~~~---i~~~~l~~l~~L~~L~L~~n~l 281 (290)
+|.+.. ...+ ...++|++|.+.+|.++.. +........|.|..|+|++|.+
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 887776 1222 2367788888888877621 1111244567788888888877
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=1e-13 Score=120.88 Aligned_cols=177 Identities=28% Similarity=0.323 Sum_probs=124.1
Q ss_pred CCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCC
Q 022897 95 FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRY 174 (290)
Q Consensus 95 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 174 (290)
+..-...+++.|++..... .+..+-.|+.+.++.|.+- .+|..+.++..|.+++|+.|+++- .+..+..++
T Consensus 74 ltdt~~aDlsrNR~~elp~-----~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp- 144 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPE-----EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH--LPDGLCDLP- 144 (722)
T ss_pred ccchhhhhccccccccCch-----HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc--CChhhhcCc-
Confidence 3344556777777765533 3445556666777777665 567777778888888888887764 222444443
Q ss_pred CCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCC
Q 022897 175 LQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLS 252 (290)
Q Consensus 175 L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~ 252 (290)
|+.|-+++|+ .+.+|. .++....|..|+.+.|.+. .+.-+..+.+|+.|.+..|.+.. |+.+..+ .|..||++
T Consensus 145 Lkvli~sNNk---l~~lp~-~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfS 219 (722)
T KOG0532|consen 145 LKVLIVSNNK---LTSLPE-EIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFS 219 (722)
T ss_pred ceeEEEecCc---cccCCc-ccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecc
Confidence 7777777777 445665 6666777888888888776 67777778888888888887777 6666655 47778888
Q ss_pred CCCCCCcccccccCCCCCCCEEecCCCCCcccccc
Q 022897 253 WNNINGSLESQGLADLPNLKILDLRDCGMTTIQGK 287 (290)
Q Consensus 253 ~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~ 287 (290)
.|+++ .||.. |..|..|++|.|.+|.++..+.+
T Consensus 220 cNkis-~iPv~-fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 220 CNKIS-YLPVD-FRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred cCcee-ecchh-hhhhhhheeeeeccCCCCCChHH
Confidence 88887 77777 77888888888888888776653
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2e-12 Score=109.62 Aligned_cols=186 Identities=21% Similarity=0.223 Sum_probs=135.6
Q ss_pred CCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCC--CchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897 93 HPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFND--SILPYLNTLTSLTTLILYSNSIEGSGTMQGLA 170 (290)
Q Consensus 93 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 170 (290)
.++.+|+++.|.+..+...... .....+++++.|||+.|-+.. .+.....++|+|+.|+++.|.+........-.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence 3577899999988877654432 145678999999999998765 33445568999999999999886533322233
Q ss_pred cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCCc---cccccCCC
Q 022897 171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITTI---QGLAKLKN 245 (290)
Q Consensus 171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~~---~~l~~~~~ 245 (290)
.++.|+.|.+++|.+.. ..+.. ....+|+|+.|++.+|... ......-+..|++|+|++|++.+. ...+.++.
T Consensus 195 ~l~~lK~L~l~~CGls~-k~V~~-~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSW-KDVQW-ILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhheEEeccCCCCH-HHHHH-HHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 56889999999999832 22332 5677899999999999533 223334567899999999999883 45778999
Q ss_pred CCEEeCCCCCCCCc-cccc----ccCCCCCCCEEecCCCCCcc
Q 022897 246 LEALDLSWNNINGS-LESQ----GLADLPNLKILDLRDCGMTT 283 (290)
Q Consensus 246 L~~L~l~~n~l~~~-i~~~----~l~~l~~L~~L~L~~n~l~~ 283 (290)
|+.|+++.+.+..- +|+. ....+++|++|+++.|++..
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 99999999988731 1221 12456899999999999843
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.22 E-value=3.4e-12 Score=105.33 Aligned_cols=216 Identities=23% Similarity=0.288 Sum_probs=154.6
Q ss_pred cCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccch-------hhhhhcCCCCCCcEEECCCC
Q 022897 62 TRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYEN-------KAYDSFGSLKQLKILDLGCN 134 (290)
Q Consensus 62 ~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------~~~~~l~~l~~L~~L~l~~n 134 (290)
...++.++|+++. +.......+ ...+.+.++|++.++++- ++|.... .+.+++-.+++|++|+||.|
T Consensus 29 ~~s~~~l~lsgnt----~G~EAa~~i-~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 29 MDSLTKLDLSGNT----FGTEAARAI-AKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred cCceEEEeccCCc----hhHHHHHHH-HHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 4568899999988 332222222 234566678999988764 4444322 23456677889999999999
Q ss_pred cCCCCchh----hccCCCCCCEEEccCCCCCCCc------------chhhcccCCCCCeeeCCCCCCCCCCccc-hhhhc
Q 022897 135 FFNDSILP----YLNTLTSLTTLILYSNSIEGSG------------TMQGLANLRYLQVLDLSWNENITSGSLT-RLGLA 197 (290)
Q Consensus 135 ~l~~~~~~----~l~~l~~L~~L~l~~n~~~~~~------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~ 197 (290)
.+....++ .+..+..|++|.|.+|.+.... ..+....-++|+++....|.+-+.+... ...+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 98655444 3456899999999999875221 1123444578999999999974443221 23567
Q ss_pred cCCCccEEEcCCCCCC------CCcCCCCCCCCcEEEccCCCCCC------ccccccCCCCCEEeCCCCCCCCcc----c
Q 022897 198 NLTNLKELDLRGCGIT------TSQGLADLPNLKTLDLRDCGITT------IQGLAKLKNLEALDLSWNNINGSL----E 261 (290)
Q Consensus 198 ~~~~L~~L~l~~n~l~------~~~~~~~l~~L~~L~l~~n~l~~------~~~l~~~~~L~~L~l~~n~l~~~i----~ 261 (290)
..+.|+.+.+..|.+. ...++..+++|+.|+|.+|-++. ...+..+++|+.|++++|.+...- .
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 7789999999999987 23567889999999999999987 345778899999999999987432 2
Q ss_pred ccccCCCCCCCEEecCCCCCcc
Q 022897 262 SQGLADLPNLKILDLRDCGMTT 283 (290)
Q Consensus 262 ~~~l~~l~~L~~L~L~~n~l~~ 283 (290)
..+-...|+|+.|.+.+|.|+.
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred HHHhccCCCCceeccCcchhHH
Confidence 2323457899999999999874
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=1.2e-11 Score=95.29 Aligned_cols=121 Identities=34% Similarity=0.370 Sum_probs=34.5
Q ss_pred CCCCcEEECCCCcCCCCchhhcc-CCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCC
Q 022897 123 LKQLKILDLGCNFFNDSILPYLN-TLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTN 201 (290)
Q Consensus 123 l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 201 (290)
...+++|+|.+|.++. .+.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|.+. .+.......+++
T Consensus 18 ~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~---~i~~~l~~~lp~ 89 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRIS---SISEGLDKNLPN 89 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS------S-CHHHHHH-TT
T ss_pred cccccccccccccccc--ccchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCC---ccccchHHhCCc
Confidence 3345555555555542 12233 345555666666655531 23455566666666666542 222211134556
Q ss_pred ccEEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCC-----ccccccCCCCCEEeC
Q 022897 202 LKELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITT-----IQGLAKLKNLEALDL 251 (290)
Q Consensus 202 L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~-----~~~l~~~~~L~~L~l 251 (290)
|++|++++|++. ....+..+++|+.|++.+|.++. .-.+..+|+|+.||-
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 666666666655 22334455666666666666654 223556677777763
No 32
>PLN03150 hypothetical protein; Provisional
Probab=99.12 E-value=3.2e-10 Score=105.20 Aligned_cols=109 Identities=29% Similarity=0.412 Sum_probs=94.4
Q ss_pred CCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCC
Q 022897 97 ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ 176 (290)
Q Consensus 97 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 176 (290)
.++.|+|++|.+.+..+. .+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.++ ..+..+++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~----~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPN----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccccCCH----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-hHHhcCCCCC
Confidence 478899999999988887 88999999999999999999999999999999999999999998766 4789999999
Q ss_pred eeeCCCCCCCCCCccchhhhcc-CCCccEEEcCCCCCC
Q 022897 177 VLDLSWNENITSGSLTRLGLAN-LTNLKELDLRGCGIT 213 (290)
Q Consensus 177 ~L~l~~n~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~ 213 (290)
+|++++|.+ .+.+|. .+.. ..++..+++.+|...
T Consensus 494 ~L~Ls~N~l--~g~iP~-~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 494 ILNLNGNSL--SGRVPA-ALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred EEECcCCcc--cccCCh-HHhhccccCceEEecCCccc
Confidence 999999998 788887 4544 346778888888654
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=1.5e-10 Score=89.27 Aligned_cols=126 Identities=35% Similarity=0.387 Sum_probs=47.2
Q ss_pred CCCCCcEEECCCCcccCccchhhhhhcC-CCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhc-cc
Q 022897 94 PFEELQSLNLSDNWFRGFYENKAYDSFG-SLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGL-AN 171 (290)
Q Consensus 94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~~ 171 (290)
+..++++|+|.+|.++..- .++ .+.+|+.|++++|.++.. +.+..++.|++|++++|.++.... .+ ..
T Consensus 17 n~~~~~~L~L~~n~I~~Ie------~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~--~l~~~ 86 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE------NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE--GLDKN 86 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH--HHHHH
T ss_pred ccccccccccccccccccc------chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc--chHHh
Confidence 4456788888888876542 344 467888888888888642 346677888888888888875321 23 35
Q ss_pred CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-C----CcCCCCCCCCcEEEccC
Q 022897 172 LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-T----SQGLADLPNLKTLDLRD 231 (290)
Q Consensus 172 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~----~~~~~~l~~L~~L~l~~ 231 (290)
+++|++|++++|.+.+...+. .+..+++|+.|++.+|.++ . ...+..+++|+.||-..
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~--~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELE--PLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TT--EEE-TTS---SCCCCG--GGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCcCCEEECcCCcCCChHHhH--HHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 788888888888875555553 5677888888888888876 1 12345677888776543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=1.8e-11 Score=99.53 Aligned_cols=130 Identities=35% Similarity=0.374 Sum_probs=108.6
Q ss_pred CCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCC
Q 022897 121 GSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLT 200 (290)
Q Consensus 121 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 200 (290)
...+.|+++|+++|.++ .+-++..-.|.++.|++++|.+... ..+..+++|..|++++|.+. .+.. .-..+-
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v---~nLa~L~~L~~LDLS~N~Ls---~~~G-wh~KLG 352 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV---QNLAELPQLQLLDLSGNLLA---ECVG-WHLKLG 352 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee---hhhhhcccceEeecccchhH---hhhh-hHhhhc
Confidence 34577999999999987 4556667789999999999999753 35888999999999999863 2332 334667
Q ss_pred CccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCC---ccccccCCCCCEEeCCCCCCCC
Q 022897 201 NLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITT---IQGLAKLKNLEALDLSWNNING 258 (290)
Q Consensus 201 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~---~~~l~~~~~L~~L~l~~n~l~~ 258 (290)
+++.|.|++|.+.....+.++.+|..|++++|+|.. ...++++|.|+++.|.+|.+.+
T Consensus 353 NIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred CEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 889999999999877788899999999999999988 6678999999999999999984
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=2.6e-10 Score=100.70 Aligned_cols=173 Identities=36% Similarity=0.493 Sum_probs=138.1
Q ss_pred EEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCC-CCCEEEccCCCCCCCcchhhcccCCCCCee
Q 022897 100 SLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLT-SLTTLILYSNSIEGSGTMQGLANLRYLQVL 178 (290)
Q Consensus 100 ~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 178 (290)
.+.+..+.+..... .+..++.++.|++.+|.++ .+++...... +|+.|++++|.+... +..+..+++|+.|
T Consensus 97 ~l~~~~~~~~~~~~-----~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~~L~~L 168 (394)
T COG4886 97 SLDLNLNRLRSNIS-----ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNL 168 (394)
T ss_pred eeeccccccccCch-----hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhh--hhhhhcccccccc
Confidence 57777777644333 3455688999999999998 4566666664 999999999999752 2367889999999
Q ss_pred eCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCC-CCCccccccCCCCCEEeCCCCCC
Q 022897 179 DLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCG-ITTIQGLAKLKNLEALDLSWNNI 256 (290)
Q Consensus 179 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~~~~L~~L~l~~n~l 256 (290)
+++.|++ ..++. .....+.|+.|++++|+++ ++..+.....|++|.+++|. +..+..+..+..+..+.+.+|++
T Consensus 169 ~l~~N~l---~~l~~-~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 169 DLSFNDL---SDLPK-LLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred ccCCchh---hhhhh-hhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee
Confidence 9999995 34554 4448899999999999999 66655677789999999994 55588889999999999999998
Q ss_pred CCcccccccCCCCCCCEEecCCCCCccccc
Q 022897 257 NGSLESQGLADLPNLKILDLRDCGMTTIQG 286 (290)
Q Consensus 257 ~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~ 286 (290)
. .++.. ++.+++++.|++++|.++.+.+
T Consensus 245 ~-~~~~~-~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 245 E-DLPES-IGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred e-eccch-hccccccceecccccccccccc
Confidence 7 44444 7888999999999999988764
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1e-11 Score=100.73 Aligned_cols=176 Identities=26% Similarity=0.278 Sum_probs=131.7
Q ss_pred CCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCC-CCCCcchhhcccCCCC
Q 022897 97 ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNS-IEGSGTMQGLANLRYL 175 (290)
Q Consensus 97 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L 175 (290)
.|+.+||++..++... +-..+..+.+|+.|.|.++.+.+.+...+.....|+.|+++.|. ++.....-.+.+++.|
T Consensus 186 Rlq~lDLS~s~it~st---l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVST---LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHH---HHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 5899999988876542 22256788999999999999999888999999999999999874 5554444467889999
Q ss_pred CeeeCCCCCCCCCCccchhhhccC-CCccEEEcCCCCCC-----CCcCCCCCCCCcEEEccCCC-CCC--ccccccCCCC
Q 022897 176 QVLDLSWNENITSGSLTRLGLANL-TNLKELDLRGCGIT-----TSQGLADLPNLKTLDLRDCG-ITT--IQGLAKLKNL 246 (290)
Q Consensus 176 ~~L~l~~n~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~-----~~~~~~~l~~L~~L~l~~n~-l~~--~~~l~~~~~L 246 (290)
..|++++|.+ ........+.+. ++|+.|+++++.-. ..--...+++|.+||+++|. ++. ...+.+++.|
T Consensus 263 ~~LNlsWc~l--~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 263 DELNLSWCFL--FTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hhcCchHhhc--cchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 9999999987 333332233333 57889999987533 11223578899999999885 443 6667788999
Q ss_pred CEEeCCCCCCCCccccc--ccCCCCCCCEEecCCC
Q 022897 247 EALDLSWNNINGSLESQ--GLADLPNLKILDLRDC 279 (290)
Q Consensus 247 ~~L~l~~n~l~~~i~~~--~l~~l~~L~~L~L~~n 279 (290)
++|.++.|... +|.. .+...|+|.+|++.++
T Consensus 341 ~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 341 QHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 99999999754 3332 2677899999998776
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.96 E-value=1.3e-11 Score=107.90 Aligned_cols=156 Identities=30% Similarity=0.392 Sum_probs=132.6
Q ss_pred CCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCC
Q 022897 121 GSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLT 200 (290)
Q Consensus 121 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 200 (290)
..+..-...|++.|++. .+|..+..+-.|+.+.++.|.+.. .+..+..+..|.+++++.|++ ..+|. .+..++
T Consensus 72 ~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~--ip~~i~~L~~lt~l~ls~Nql---S~lp~-~lC~lp 144 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT--IPEAICNLEALTFLDLSSNQL---SHLPD-GLCDLP 144 (722)
T ss_pred ccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhcccee--cchhhhhhhHHHHhhhccchh---hcCCh-hhhcCc
Confidence 34555667899999997 688888888899999999998874 334788999999999999995 45665 555555
Q ss_pred CccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCC
Q 022897 201 NLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD 278 (290)
Q Consensus 201 ~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~ 278 (290)
|+.|-+++|+++ .|+.++...+|..|+.+.|++.. +..+..+.+|+.|.+..|++. .+|.+ +..++ |..||+++
T Consensus 145 -Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~E-l~~Lp-Li~lDfSc 220 (722)
T KOG0532|consen 145 -LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEE-LCSLP-LIRLDFSC 220 (722)
T ss_pred -ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHH-HhCCc-eeeeeccc
Confidence 899999999999 89999999999999999999998 888999999999999999998 78888 66666 89999999
Q ss_pred CCCcccccc
Q 022897 279 CGMTTIQGK 287 (290)
Q Consensus 279 n~l~~~~~~ 287 (290)
|+++.+|-.
T Consensus 221 Nkis~iPv~ 229 (722)
T KOG0532|consen 221 NKISYLPVD 229 (722)
T ss_pred Cceeecchh
Confidence 999988754
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=8.5e-10 Score=70.15 Aligned_cols=59 Identities=42% Similarity=0.703 Sum_probs=46.5
Q ss_pred CCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCC
Q 022897 222 PNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGM 281 (290)
Q Consensus 222 ~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l 281 (290)
++|++|++++|.++. +..+..+++|++|++++|.++ .+++..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence 467788888888877 346778888888888888887 67766688888888888888875
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.89 E-value=2.7e-10 Score=101.12 Aligned_cols=177 Identities=36% Similarity=0.471 Sum_probs=94.3
Q ss_pred CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897 92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN 171 (290)
Q Consensus 92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 171 (290)
+..+.+|+.|++.+|.+..... .+..+++|++|++++|.++.. ..+..++.|+.|++++|.+... ..+..
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~-----~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~---~~~~~ 160 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIEN-----LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI---SGLES 160 (414)
T ss_pred cccccceeeeeccccchhhccc-----chhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc---cCCcc
Confidence 4445566666666666654432 144556666666666666532 2234445566666666666532 23444
Q ss_pred CCCCCeeeCCCCCCCCCCccch-hhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCC--CCE
Q 022897 172 LRYLQVLDLSWNENITSGSLTR-LGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKN--LEA 248 (290)
Q Consensus 172 l~~L~~L~l~~n~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~--L~~ 248 (290)
++.|+.+++++|.+. .+.. . ...+.+++.+.+.+|.+.....+..+..+..+++..|.++....+..+.. |+.
T Consensus 161 l~~L~~l~l~~n~i~---~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~ 236 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIV---DIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRE 236 (414)
T ss_pred chhhhcccCCcchhh---hhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHH
Confidence 566666666666541 1221 0 34555566666666655544444444444444555555544333333333 677
Q ss_pred EeCCCCCCCCcccccccCCCCCCCEEecCCCCCccc
Q 022897 249 LDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284 (290)
Q Consensus 249 L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~ 284 (290)
+++++|.+. .++.. +..+..+..+++.+|++...
T Consensus 237 l~l~~n~i~-~~~~~-~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 237 LYLSGNRIS-RSPEG-LENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred HhcccCccc-ccccc-ccccccccccchhhcccccc
Confidence 777777766 34322 55566677777777766543
No 40
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.86 E-value=4e-09 Score=61.65 Aligned_cols=41 Identities=39% Similarity=0.764 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHhhhhhccCCCCCCCCCCCCCcCCCCCCC--CCCCCCCCceEec
Q 022897 8 LETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMP--SDCCDDWEGVKCN 59 (290)
Q Consensus 8 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~--~~~c~~w~gv~c~ 59 (290)
+++|++||++||+++.. +. ...+.+|.. . .++| +|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~--~~---~~~l~~W~~-----~~~~~~C-~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNN--DP---SGVLSSWNP-----SSDSDPC-SWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT---SC----CCCTT--T-----T--S-CC-CSTTEEE-
T ss_pred CcHHHHHHHHHHHhccc--cc---CcccccCCC-----cCCCCCe-eeccEEeC
Confidence 36899999999999996 42 578999997 4 6888 99999995
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.6e-09 Score=68.86 Aligned_cols=61 Identities=31% Similarity=0.380 Sum_probs=43.4
Q ss_pred CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCC
Q 022897 96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSI 160 (290)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 160 (290)
++|++|++++|.+....+. .|..+++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~----~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPD----SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTT----TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHH----HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4577777777777766555 667777777777777777765566677777777777777653
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.73 E-value=7.6e-10 Score=98.25 Aligned_cols=174 Identities=35% Similarity=0.411 Sum_probs=134.7
Q ss_pred CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCC
Q 022897 94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLR 173 (290)
Q Consensus 94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 173 (290)
.+..++.+.+..|.+..... .+..+++|+.|++..|.+.. +...+..+++|++|++++|.++.. ..+..++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~-----~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i---~~l~~l~ 140 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILN-----HLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL---EGLSTLT 140 (414)
T ss_pred HhHhHHhhccchhhhhhhhc-----ccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc---cchhhcc
Confidence 45667777788887765211 47889999999999999974 333367799999999999999864 2567777
Q ss_pred CCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcC--CCCCCCCcEEEccCCCCCCccccccCCCCCEEeC
Q 022897 174 YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQG--LADLPNLKTLDLRDCGITTIQGLAKLKNLEALDL 251 (290)
Q Consensus 174 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l 251 (290)
.|+.|++.+|.+.. +. .+..++.|+.+++++|.+..... ...+.+++.+.+.+|.+..+..+.....+..+++
T Consensus 141 ~L~~L~l~~N~i~~---~~--~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l 215 (414)
T KOG0531|consen 141 LLKELNLSGNLISD---IS--GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSL 215 (414)
T ss_pred chhhheeccCcchh---cc--CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhc
Confidence 89999999999633 33 45568899999999999984444 5888999999999999999888777777888899
Q ss_pred CCCCCCCcccccccCCCCC--CCEEecCCCCCccc
Q 022897 252 SWNNINGSLESQGLADLPN--LKILDLRDCGMTTI 284 (290)
Q Consensus 252 ~~n~l~~~i~~~~l~~l~~--L~~L~L~~n~l~~~ 284 (290)
..|.++ .+-. +..+.. |+.+++++|.+...
T Consensus 216 ~~n~i~-~~~~--l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 216 LDNKIS-KLEG--LNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred ccccce-eccC--cccchhHHHHHHhcccCccccc
Confidence 999887 3322 223333 89999999998864
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.71 E-value=8.8e-09 Score=82.90 Aligned_cols=217 Identities=21% Similarity=0.192 Sum_probs=132.0
Q ss_pred cCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchh-------hhhhcCCCCCCcEEECCCC
Q 022897 62 TRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENK-------AYDSFGSLKQLKILDLGCN 134 (290)
Q Consensus 62 ~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-------~~~~l~~l~~L~~L~l~~n 134 (290)
...++.++|+|+. +....+..+. ..+.+-.+|+..++++-. +|...+. +..++-+|+.|+..+||.|
T Consensus 29 ~d~~~evdLSGNt----igtEA~e~l~-~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 29 MDELVEVDLSGNT----IGTEAMEELC-NVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred hcceeEEeccCCc----ccHHHHHHHH-HHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 4457788888877 3322222222 235556777777776542 3322221 2345667888888888888
Q ss_pred cCCCCchh----hccCCCCCCEEEccCCCCCCC---cch---------hhcccCCCCCeeeCCCCCCCCCCc-cchhhhc
Q 022897 135 FFNDSILP----YLNTLTSLTTLILYSNSIEGS---GTM---------QGLANLRYLQVLDLSWNENITSGS-LTRLGLA 197 (290)
Q Consensus 135 ~l~~~~~~----~l~~l~~L~~L~l~~n~~~~~---~~~---------~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~ 197 (290)
.+....|+ .++.-..|++|.+++|.+... -.. .....-+.|+.+....|.+..... .....+.
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~ 182 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE 182 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence 87655554 345667888888888876421 111 122344678888888887622111 1111233
Q ss_pred cCCCccEEEcCCCCCC-------CCcCCCCCCCCcEEEccCCCCCC------ccccccCCCCCEEeCCCCCCCCcccccc
Q 022897 198 NLTNLKELDLRGCGIT-------TSQGLADLPNLKTLDLRDCGITT------IQGLAKLKNLEALDLSWNNINGSLESQG 264 (290)
Q Consensus 198 ~~~~L~~L~l~~n~l~-------~~~~~~~l~~L~~L~l~~n~l~~------~~~l~~~~~L~~L~l~~n~l~~~i~~~~ 264 (290)
.-..|+.+.+..|.+. ....+..+.+|+.|++.+|-++- ...+...+.|+.|.+..|-++..-....
T Consensus 183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence 3357888888888776 12344567788888888888775 2345666778888888888774433322
Q ss_pred cC-----CCCCCCEEecCCCCCccc
Q 022897 265 LA-----DLPNLKILDLRDCGMTTI 284 (290)
Q Consensus 265 l~-----~l~~L~~L~L~~n~l~~~ 284 (290)
+. ..|+|..|...+|.+.+-
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred HHHhhhhcCCCccccccchhhhcCc
Confidence 21 247788888888876653
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=5.9e-09 Score=84.88 Aligned_cols=182 Identities=19% Similarity=0.267 Sum_probs=117.6
Q ss_pred CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCC
Q 022897 94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLR 173 (290)
Q Consensus 94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 173 (290)
.+..+++++|.+|.++.-. .+...+.++|.|++|+|+.|.+...+-..-....+|+.|.|.+..+......+.+..++
T Consensus 69 ~~~~v~elDL~~N~iSdWs--eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWS--EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHH--HHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 4567888999999887542 22224578899999999999887543222235678889999888876554445667778
Q ss_pred CCCeeeCCCCCCC---CCCccch----------------h-------hhccCCCccEEEcCCCCCC---CCcCCCCCCCC
Q 022897 174 YLQVLDLSWNENI---TSGSLTR----------------L-------GLANLTNLKELDLRGCGIT---TSQGLADLPNL 224 (290)
Q Consensus 174 ~L~~L~l~~n~~~---~~~~~~~----------------~-------~~~~~~~L~~L~l~~n~l~---~~~~~~~l~~L 224 (290)
.+++|+++.|.+. ....... . ....++++..+-+..|.+. ..+....++.+
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence 8888888877421 0100000 0 0122456666666666544 33445556677
Q ss_pred cEEEccCCCCCC---ccccccCCCCCEEeCCCCCCCCccccc-----ccCCCCCCCEEecC
Q 022897 225 KTLDLRDCGITT---IQGLAKLKNLEALDLSWNNINGSLESQ-----GLADLPNLKILDLR 277 (290)
Q Consensus 225 ~~L~l~~n~l~~---~~~l~~~~~L~~L~l~~n~l~~~i~~~-----~l~~l~~L~~L~L~ 277 (290)
..|+++.++|.+ .+.+..+++|+.|.++++.+.+.+-.. .++.+++++.|+=+
T Consensus 227 ~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 227 SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 788888888877 566777888888888888887544321 25667777776533
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.68 E-value=4e-10 Score=101.47 Aligned_cols=127 Identities=31% Similarity=0.334 Sum_probs=81.1
Q ss_pred CCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCC-CCCCCcEE
Q 022897 149 SLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLA-DLPNLKTL 227 (290)
Q Consensus 149 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~l~~L~~L 227 (290)
.|...++++|.+.. ....+.-++.|+.|+|++|++.. +. .+..++.|++|+|++|.+...+.+. .-.+|..|
T Consensus 165 ~L~~a~fsyN~L~~--mD~SLqll~ale~LnLshNk~~~---v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL--MDESLQLLPALESLNLSHNKFTK---VD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLL 237 (1096)
T ss_pred hHhhhhcchhhHHh--HHHHHHHHHHhhhhccchhhhhh---hH--HHHhcccccccccccchhccccccchhhhhheee
Confidence 45556666666543 22356666777777777777522 22 5667777777777777777322222 12247777
Q ss_pred EccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCc
Q 022897 228 DLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMT 282 (290)
Q Consensus 228 ~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~ 282 (290)
.+++|.++..-.+.++.+|+.||+++|-+.+.-.-.++..+..|+.|.|.+|++-
T Consensus 238 ~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 238 NLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7777777777777777777788888777765333333555667777777777663
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.65 E-value=1.9e-08 Score=95.96 Aligned_cols=180 Identities=27% Similarity=0.333 Sum_probs=114.7
Q ss_pred CCCCcEEECCCCc--ccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccC
Q 022897 95 FEELQSLNLSDNW--FRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANL 172 (290)
Q Consensus 95 ~~~L~~L~l~~n~--l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l 172 (290)
.++|++|-+..|. +...... .|..++.|++||+++|.-.+.+|..++.+-+|++|+++++.+.. .|..+..+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~----ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~L 617 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGE----FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH--LPSGLGNL 617 (889)
T ss_pred CCccceEEEeecchhhhhcCHH----HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc--cchHHHHH
Confidence 4468888888775 3333222 47889999999999888777899999999999999999998873 44688899
Q ss_pred CCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC----CCcCCCCCCCCcEEEccCCCCCCccccccCCCCC-
Q 022897 173 RYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT----TSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLE- 247 (290)
Q Consensus 173 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~- 247 (290)
+.|.+|++..+.. ...++. ....+++|++|.+...... ....+..+.+|+.+............+..+..|+
T Consensus 618 k~L~~Lnl~~~~~--l~~~~~-i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~ 694 (889)
T KOG4658|consen 618 KKLIYLNLEVTGR--LESIPG-ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRS 694 (889)
T ss_pred Hhhheeccccccc--cccccc-hhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHH
Confidence 9999999988775 333433 5566889999988776533 2233445555555555433331112222222222
Q ss_pred ---EEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccc
Q 022897 248 ---ALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ 285 (290)
Q Consensus 248 ---~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~ 285 (290)
.+.+..+... ..+.. +..+.+|+.|.+.++.+..+.
T Consensus 695 ~~~~l~~~~~~~~-~~~~~-~~~l~~L~~L~i~~~~~~e~~ 733 (889)
T KOG4658|consen 695 LLQSLSIEGCSKR-TLISS-LGSLGNLEELSILDCGISEIV 733 (889)
T ss_pred HhHhhhhcccccc-eeecc-cccccCcceEEEEcCCCchhh
Confidence 2222222222 23333 667778888888888776543
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.3e-09 Score=86.34 Aligned_cols=161 Identities=20% Similarity=0.138 Sum_probs=117.2
Q ss_pred cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCc-CCCCc-hhhccCCCCCCEEEccCCCCCCCcchhh
Q 022897 91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNF-FNDSI-LPYLNTLTSLTTLILYSNSIEGSGTMQG 168 (290)
Q Consensus 91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 168 (290)
.+..+.+|+.|.+.++.+...+.. .+.+..+|+.|+|+.+. ++... .-.+..++.|..|++++|.+........
T Consensus 205 iLs~C~kLk~lSlEg~~LdD~I~~----~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~ 280 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLDDPIVN----TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA 280 (419)
T ss_pred HHHHHHhhhhccccccccCcHHHH----HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH
Confidence 356788999999999999887766 78899999999998764 44322 2235689999999999999876543322
Q ss_pred ccc-CCCCCeeeCCCCCCCCC-CccchhhhccCCCccEEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCCcc---cc
Q 022897 169 LAN-LRYLQVLDLSWNENITS-GSLTRLGLANLTNLKELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITTIQ---GL 240 (290)
Q Consensus 169 ~~~-l~~L~~L~l~~n~~~~~-~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~~~---~l 240 (290)
..+ -.+|..|+++++.-.-. ..+. .....+++|.+|+|+.|... ....+.+++.|++|.++.|....|. .+
T Consensus 281 V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l 359 (419)
T KOG2120|consen 281 VAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLEL 359 (419)
T ss_pred HhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeee
Confidence 332 25788899988752101 1222 24567899999999998654 3345678899999999999766643 46
Q ss_pred ccCCCCCEEeCCCCCC
Q 022897 241 AKLKNLEALDLSWNNI 256 (290)
Q Consensus 241 ~~~~~L~~L~l~~n~l 256 (290)
...|+|.+|++.++--
T Consensus 360 ~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 360 NSKPSLVYLDVFGCVS 375 (419)
T ss_pred ccCcceEEEEeccccC
Confidence 7788999999877643
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=2.8e-08 Score=81.00 Aligned_cols=176 Identities=21% Similarity=0.205 Sum_probs=119.6
Q ss_pred CcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhc-CCCCCCcEEECCCCcCCCC-c
Q 022897 63 RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSF-GSLKQLKILDLGCNFFNDS-I 140 (290)
Q Consensus 63 ~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~-~ 140 (290)
.+|..+||.++. +..+.. ....+.++|.|+.|+++.|.+...+. .+ -...+|++|-|.+..+.-. .
T Consensus 71 ~~v~elDL~~N~-iSdWse------I~~ile~lP~l~~LNls~N~L~s~I~-----~lp~p~~nl~~lVLNgT~L~w~~~ 138 (418)
T KOG2982|consen 71 TDVKELDLTGNL-ISDWSE------IGAILEQLPALTTLNLSCNSLSSDIK-----SLPLPLKNLRVLVLNGTGLSWTQS 138 (418)
T ss_pred hhhhhhhcccch-hccHHH------HHHHHhcCccceEeeccCCcCCCccc-----cCcccccceEEEEEcCCCCChhhh
Confidence 357777777776 222211 12457789999999999999987665 34 3678999999988876432 2
Q ss_pred hhhccCCCCCCEEEccCCCCCCC---------cch-------------------hhcccCCCCCeeeCCCCCCCCCCccc
Q 022897 141 LPYLNTLTSLTTLILYSNSIEGS---------GTM-------------------QGLANLRYLQVLDLSWNENITSGSLT 192 (290)
Q Consensus 141 ~~~l~~l~~L~~L~l~~n~~~~~---------~~~-------------------~~~~~l~~L~~L~l~~n~~~~~~~~~ 192 (290)
-..+..+|.+++|.++.|.+... ..+ ..-.-++++..+.+..|.+.+...
T Consensus 139 ~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~-- 216 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESS-- 216 (418)
T ss_pred hhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhh--
Confidence 34456788888998888843210 000 001124566777777776533222
Q ss_pred hhhhccCCCccEEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCCc--------cccccCCCCCEEeCC
Q 022897 193 RLGLANLTNLKELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITTI--------QGLAKLKNLEALDLS 252 (290)
Q Consensus 193 ~~~~~~~~~L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~~--------~~l~~~~~L~~L~l~ 252 (290)
...+..++.+..|+|+.+++. ..+.+.+++.|..|.++.+.+.++ -.++.+++++.|+=+
T Consensus 217 ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 217 EKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 125677788889999999987 466788999999999999998872 236778888888744
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.41 E-value=9.4e-08 Score=89.10 Aligned_cols=147 Identities=24% Similarity=0.297 Sum_probs=96.0
Q ss_pred CCCcEEECCCCcCC-CCchhhcc-CCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCC
Q 022897 124 KQLKILDLGCNFFN-DSILPYLN-TLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTN 201 (290)
Q Consensus 124 ~~L~~L~l~~n~l~-~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 201 (290)
.+|++|++++.... ..=|..++ .+|+|+.|.+++-.+..........++++|..||+++..+ ..+ ..++++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI---~nl--~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI---SNL--SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc---cCc--HHHhcccc
Confidence 67888888775432 22223333 4788888888887765544445667788888888888774 233 26778888
Q ss_pred ccEEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCC--------ccccccCCCCCEEeCCCCCCCCcccccccCCCCC
Q 022897 202 LKELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITT--------IQGLAKLKNLEALDLSWNNINGSLESQGLADLPN 270 (290)
Q Consensus 202 L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~--------~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~ 270 (290)
|+.|.+.+=.+. ....+..+++|+.||+|...... .+.-..+|.|+.||.|++.+.+.+-...+...++
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN 276 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence 888877665554 22356678888888888776555 2233447788888888887776655544445555
Q ss_pred CCEEe
Q 022897 271 LKILD 275 (290)
Q Consensus 271 L~~L~ 275 (290)
|+.+.
T Consensus 277 L~~i~ 281 (699)
T KOG3665|consen 277 LQQIA 281 (699)
T ss_pred Hhhhh
Confidence 55444
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.40 E-value=2.5e-09 Score=96.48 Aligned_cols=159 Identities=25% Similarity=0.272 Sum_probs=117.6
Q ss_pred cCCCCCCCcEEECCCCcccCccch-hh----------------hh-------hcC---CCCCCcEEECCCCcCCCCchhh
Q 022897 91 LFHPFEELQSLNLSDNWFRGFYEN-KA----------------YD-------SFG---SLKQLKILDLGCNFFNDSILPY 143 (290)
Q Consensus 91 ~~~~~~~L~~L~l~~n~l~~~~~~-~~----------------~~-------~l~---~l~~L~~L~l~~n~l~~~~~~~ 143 (290)
.+..|..|+.|.+.++.+.....- .+ .+ .+. ....|.+.++++|.+. .+-.+
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD~S 182 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMDES 182 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHHHH
Confidence 456788899999988887542100 00 00 010 1134566677777765 34456
Q ss_pred ccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCC
Q 022897 144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPN 223 (290)
Q Consensus 144 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~ 223 (290)
+.-++.|+.|+|+.|+++.. ..+..++.|++|||+.|.+ ..+|......+ +|+.|.+.+|.++....+.++.+
T Consensus 183 Lqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L---~~vp~l~~~gc-~L~~L~lrnN~l~tL~gie~Lks 255 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCL---RHVPQLSMVGC-KLQLLNLRNNALTTLRGIENLKS 255 (1096)
T ss_pred HHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchh---ccccccchhhh-hheeeeecccHHHhhhhHHhhhh
Confidence 66788999999999999863 3788999999999999995 44554233333 49999999999997778889999
Q ss_pred CcEEEccCCCCCC---ccccccCCCCCEEeCCCCCCC
Q 022897 224 LKTLDLRDCGITT---IQGLAKLKNLEALDLSWNNIN 257 (290)
Q Consensus 224 L~~L~l~~n~l~~---~~~l~~~~~L~~L~l~~n~l~ 257 (290)
|+.||+++|-+.+ ...+..+..|+.|+|.+|.+-
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9999999999888 556777888999999999886
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.36 E-value=6e-07 Score=52.50 Aligned_cols=38 Identities=47% Similarity=0.719 Sum_probs=19.9
Q ss_pred CCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccc
Q 022897 245 NLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284 (290)
Q Consensus 245 ~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~ 284 (290)
+|++|++++|.++ .+|+. ++.+++|+.|++++|+|+.+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~-l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPE-LSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-S-SHGGH-GTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCc-ccCch-HhCCCCCCEEEecCCCCCCC
Confidence 4555555555555 45544 55555555555555555543
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.33 E-value=2e-07 Score=75.29 Aligned_cols=193 Identities=23% Similarity=0.240 Sum_probs=138.3
Q ss_pred cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhh-------------ccCCCCCCEEEccC
Q 022897 91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY-------------LNTLTSLTTLILYS 157 (290)
Q Consensus 91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-------------l~~l~~L~~L~l~~ 157 (290)
.+-+||+|++++|++|.+....+..+.+.++.-..|.+|.+++|.+....... ...-|.|+.+....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 45679999999999999998888877778889999999999999874322111 12457899999999
Q ss_pred CCCCCCcc---hhhcccCCCCCeeeCCCCCCCCCC--ccchhhhccCCCccEEEcCCCCCC------CCcCCCCCCCCcE
Q 022897 158 NSIEGSGT---MQGLANLRYLQVLDLSWNENITSG--SLTRLGLANLTNLKELDLRGCGIT------TSQGLADLPNLKT 226 (290)
Q Consensus 158 n~~~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~------~~~~~~~l~~L~~ 226 (290)
|.+..... ...+..-..|+++.+..|.+...| .+....+..+.+|+.|++..|.++ ...++...+.|++
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 98753211 112333368999999999974442 122234567789999999999988 2345556677999
Q ss_pred EEccCCCCCC--c----ccc--ccCCCCCEEeCCCCCCCCcc------cccccCCCCCCCEEecCCCCCcc
Q 022897 227 LDLRDCGITT--I----QGL--AKLKNLEALDLSWNNINGSL------ESQGLADLPNLKILDLRDCGMTT 283 (290)
Q Consensus 227 L~l~~n~l~~--~----~~l--~~~~~L~~L~l~~n~l~~~i------~~~~l~~l~~L~~L~L~~n~l~~ 283 (290)
|.+.+|-++. . ..+ ...++|..|...+|..-+.+ +...-..+|-|..|.+.+|.|..
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 9999998876 1 222 23678999999999776432 22223456777888888888765
No 53
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.32 E-value=3.2e-07 Score=87.77 Aligned_cols=95 Identities=26% Similarity=0.201 Sum_probs=77.4
Q ss_pred ccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC
Q 022897 84 ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 163 (290)
....+..+|..++.|+.||+++|.--+..|. .++.+-+|++|+++.+.+. .+|..+.++..|.+|++..+.....
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~ 633 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLES 633 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccc
Confidence 3445566788999999999998766555565 8899999999999999998 7899999999999999999876544
Q ss_pred cchhhcccCCCCCeeeCCCCC
Q 022897 164 GTMQGLANLRYLQVLDLSWNE 184 (290)
Q Consensus 164 ~~~~~~~~l~~L~~L~l~~n~ 184 (290)
. +.....+++|++|.+....
T Consensus 634 ~-~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 634 I-PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred c-cchhhhcccccEEEeeccc
Confidence 4 3355668999999987664
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.25 E-value=9.1e-07 Score=82.65 Aligned_cols=135 Identities=25% Similarity=0.325 Sum_probs=103.0
Q ss_pred CCCCEEEccCCCCCCCcchhh-cccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcE
Q 022897 148 TSLTTLILYSNSIEGSGTMQG-LANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKT 226 (290)
Q Consensus 148 ~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~ 226 (290)
.+|++|++++...-....+.. -..+|.|+.|.+.+-.+... ... ....++++|..||+++.+++....++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~-~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND-DFS-QLCASFPNLRSLDISGTNISNLSGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch-hHH-HHhhccCccceeecCCCCccCcHHHhccccHHH
Confidence 579999999875443333333 34679999999998776322 222 367889999999999999997788999999999
Q ss_pred EEccCCCCCC---ccccccCCCCCEEeCCCCCCCCc--cccc---ccCCCCCCCEEecCCCCCccc
Q 022897 227 LDLRDCGITT---IQGLAKLKNLEALDLSWNNINGS--LESQ---GLADLPNLKILDLRDCGMTTI 284 (290)
Q Consensus 227 L~l~~n~l~~---~~~l~~~~~L~~L~l~~n~l~~~--i~~~---~l~~l~~L~~L~L~~n~l~~~ 284 (290)
|.+.+=.+.. ...+..+++|++||+|....... +... --..+|+|+.||.|+..+++.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 9999988887 45678899999999999876532 1211 134589999999999887754
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.16 E-value=7.3e-08 Score=69.85 Aligned_cols=130 Identities=22% Similarity=0.208 Sum_probs=78.0
Q ss_pred CCEEEccCCCCCCC-cchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEE
Q 022897 150 LTTLILYSNSIEGS-GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTL 227 (290)
Q Consensus 150 L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L 227 (290)
+..++|+.|++--. .....+.....|...++++|.+ ..+|......++.++.|+|++|.++ .|..+..++.|+.|
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f---k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF---KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchh---hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 45566777765310 0112334445666677777774 3455544455567777777777777 66667777777777
Q ss_pred EccCCCCCC-ccccccCCCCCEEeCCCCCCCCccccccc-CCCCCCCEEecCCCCCcccc
Q 022897 228 DLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGL-ADLPNLKILDLRDCGMTTIQ 285 (290)
Q Consensus 228 ~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l-~~l~~L~~L~L~~n~l~~~~ 285 (290)
+++.|.+.. +..+..+.++-.|+..+|.+- ++|...+ +..+. ..++.++.+.+.-
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~a--l~~lgnepl~~~~ 162 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPA--LIKLGNEPLGDET 162 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHH--HHHhcCCcccccC
Confidence 777777776 555555777777777777665 5655422 22222 2333555555443
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=4e-06 Score=49.03 Aligned_cols=39 Identities=44% Similarity=0.591 Sum_probs=26.6
Q ss_pred CCCcEEEccCCCCCCccc-cccCCCCCEEeCCCCCCCCccc
Q 022897 222 PNLKTLDLRDCGITTIQG-LAKLKNLEALDLSWNNINGSLE 261 (290)
Q Consensus 222 ~~L~~L~l~~n~l~~~~~-l~~~~~L~~L~l~~n~l~~~i~ 261 (290)
++|++|++++|+|++.+. +.++++|+.|++++|+++ .++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC-CCc
Confidence 367777777777777444 777888888888888777 444
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.15 E-value=3.4e-06 Score=65.28 Aligned_cols=81 Identities=31% Similarity=0.312 Sum_probs=37.5
Q ss_pred CcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCe
Q 022897 98 LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQV 177 (290)
Q Consensus 98 L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 177 (290)
...++|++|.+.... .|..++.|+.|.+++|.++...|.--.-+++|..|.+.+|.+.....-..+..+++|++
T Consensus 44 ~d~iDLtdNdl~~l~------~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLD------NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cceecccccchhhcc------cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 444555555543221 34455555555555555554333332334455555555555443222223444445555
Q ss_pred eeCCCCC
Q 022897 178 LDLSWNE 184 (290)
Q Consensus 178 L~l~~n~ 184 (290)
|.+-+|.
T Consensus 118 Ltll~Np 124 (233)
T KOG1644|consen 118 LTLLGNP 124 (233)
T ss_pred eeecCCc
Confidence 5554444
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=1.4e-05 Score=69.44 Aligned_cols=135 Identities=13% Similarity=0.132 Sum_probs=73.8
Q ss_pred CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCC
Q 022897 94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLR 173 (290)
Q Consensus 94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 173 (290)
.+.+++.|++++|.+...+ .+ ..+|++|.++++.-...+|..+ .++|++|++++|......| .
T Consensus 50 ~~~~l~~L~Is~c~L~sLP------~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~ 112 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP------VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------E 112 (426)
T ss_pred HhcCCCEEEeCCCCCcccC------CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------c
Confidence 3466778888877665432 11 2358888887654333455444 2578888888773222222 3
Q ss_pred CCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCC--CCCCCCcEEEccCCCCCC-ccccccCCCCCEEe
Q 022897 174 YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGL--ADLPNLKTLDLRDCGITT-IQGLAKLKNLEALD 250 (290)
Q Consensus 174 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~ 250 (290)
.|+.|++..+.....+.+|. +|+.|.+.++.......+ .-.++|++|.+++|.... |+.+. .+|+.|+
T Consensus 113 sLe~L~L~~n~~~~L~~LPs-------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 113 SVRSLEIKGSATDSIKNVPN-------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSIT 183 (426)
T ss_pred ccceEEeCCCCCcccccCcc-------hHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEE
Confidence 46777776655432333332 456666644321111001 112577888887776554 33333 4677777
Q ss_pred CCCC
Q 022897 251 LSWN 254 (290)
Q Consensus 251 l~~n 254 (290)
++.+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 7665
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.05 E-value=1.8e-07 Score=67.82 Aligned_cols=135 Identities=21% Similarity=0.187 Sum_probs=99.0
Q ss_pred CCCCCcEEECCCCcCCCCchh---hccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhcc
Q 022897 122 SLKQLKILDLGCNFFNDSILP---YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLAN 198 (290)
Q Consensus 122 ~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 198 (290)
.-..+..++|+.+.+. .+++ .+.....|...+|++|.+.. .+++.-...+.++.|++++|.+ ..+|. .+..
T Consensus 25 dakE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~nei---sdvPe-E~Aa 98 (177)
T KOG4579|consen 25 DAKELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEI---SDVPE-ELAA 98 (177)
T ss_pred HHHHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhh---hhchH-HHhh
Confidence 3456788899998774 2333 44566778888999999975 3443444556899999999994 56887 6999
Q ss_pred CCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCCc-cccccCCCCCEEeCCCCCCCCcccc
Q 022897 199 LTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITTI-QGLAKLKNLEALDLSWNNINGSLES 262 (290)
Q Consensus 199 ~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~~~~L~~L~l~~n~l~~~i~~ 262 (290)
++.|+.|+++.|.+. .|..+..+.++..|+..+|.+... ..+-........++.++.+.+.-+.
T Consensus 99 m~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 99 MPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred hHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCcc
Confidence 999999999999998 777777899999999999998872 2233333334445667777655444
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.03 E-value=1.4e-05 Score=61.89 Aligned_cols=108 Identities=31% Similarity=0.301 Sum_probs=65.3
Q ss_pred CCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCcc
Q 022897 124 KQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLK 203 (290)
Q Consensus 124 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~ 203 (290)
.....+||++|.+.. ...|..++.|..|.+.+|.++...+ ..-..+++|..|.+.+|++...+.+. .+..++.|+
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~--pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLD--PLASCPKLE 116 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcc--hhccCCccc
Confidence 455667777776642 2345566777777777777765333 23334566777777777765555554 356666777
Q ss_pred EEEcCCCCCCC-----CcCCCCCCCCcEEEccCCCCCC
Q 022897 204 ELDLRGCGITT-----SQGLADLPNLKTLDLRDCGITT 236 (290)
Q Consensus 204 ~L~l~~n~l~~-----~~~~~~l~~L~~L~l~~n~l~~ 236 (290)
+|.+-+|.++. ...+..+++|+.||.++-...+
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~E 154 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKE 154 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhhhHHH
Confidence 77777776651 2334566667776666554444
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.81 E-value=1.3e-05 Score=64.54 Aligned_cols=108 Identities=26% Similarity=0.236 Sum_probs=55.3
Q ss_pred CCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCC--cCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccC
Q 022897 95 FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCN--FFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANL 172 (290)
Q Consensus 95 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l 172 (290)
+..|+.|++.+..++... .|..+++|+.|.++.| ++.+.++...-.+|+|++++++.|++.....-..+..+
T Consensus 42 ~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 344555555555444321 4556666777777766 44444444444557777777777766532222234455
Q ss_pred CCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcC
Q 022897 173 RYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLR 208 (290)
Q Consensus 173 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~ 208 (290)
.+|..|++..|.-......-...+.-+++|++|+-.
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 566666666665321111111234445556655543
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.70 E-value=2e-05 Score=63.49 Aligned_cols=68 Identities=38% Similarity=0.476 Sum_probs=32.4
Q ss_pred hcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCC---cCCCCCCCCcEEEccCCCCCC
Q 022897 168 GLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTS---QGLADLPNLKTLDLRDCGITT 236 (290)
Q Consensus 168 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~ 236 (290)
.+..+++|++|.++.|.+...+.+.. ....+++|++|++++|++.++ ..+..+.+|..|++.+|..+.
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 34455555555555553222333333 333445566666666655522 223344455555555554444
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.65 E-value=0.00051 Score=59.98 Aligned_cols=138 Identities=14% Similarity=0.137 Sum_probs=88.5
Q ss_pred hcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhcc
Q 022897 119 SFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLAN 198 (290)
Q Consensus 119 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 198 (290)
.+..+.++++|++++|.+. .+|. + .++|++|.+++|.-....+ ..+ ..+|+.|++.+|.. ...+|.
T Consensus 47 r~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~--L~sLP~----- 112 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPE--ISGLPE----- 112 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCC-chh--hhhhhheEccCccc--cccccc-----
Confidence 4556789999999999776 3452 1 3469999999875433333 233 25899999998853 334443
Q ss_pred CCCccEEEcCCCCCCCCcCCCCC-CCCcEEEccCCCCCCcccc--ccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEe
Q 022897 199 LTNLKELDLRGCGITTSQGLADL-PNLKTLDLRDCGITTIQGL--AKLKNLEALDLSWNNINGSLESQGLADLPNLKILD 275 (290)
Q Consensus 199 ~~~L~~L~l~~n~l~~~~~~~~l-~~L~~L~l~~n~l~~~~~l--~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~ 275 (290)
.|+.|++..+... .+..+ ++|+.|.+.++.......+ .-.++|++|++++|... .+|.. +. .+|+.|.
T Consensus 113 --sLe~L~L~~n~~~---~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~-LP--~SLk~L~ 183 (426)
T PRK15386 113 --SVRSLEIKGSATD---SIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEK-LP--ESLQSIT 183 (426)
T ss_pred --ccceEEeCCCCCc---ccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccc-cc--ccCcEEE
Confidence 5788888766543 12233 3688888865432111111 12268999999999876 44543 22 5788888
Q ss_pred cCCC
Q 022897 276 LRDC 279 (290)
Q Consensus 276 L~~n 279 (290)
++.+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 8776
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=3.8e-06 Score=68.23 Aligned_cols=99 Identities=28% Similarity=0.227 Sum_probs=58.9
Q ss_pred CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCC---ccccccCCCCCE
Q 022897 172 LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITT---IQGLAKLKNLEA 248 (290)
Q Consensus 172 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~---~~~l~~~~~L~~ 248 (290)
+.+.+.|++-++.+.+ |. ....++.|+.|.|+-|+++....+..|++|++|.|..|.|.+ ...+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~D---Is--ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD---IS--ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccH---HH--HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 3455555665555422 22 345566666666666666655556667777777777777766 344566777777
Q ss_pred EeCCCCCCCCccccc----ccCCCCCCCEEe
Q 022897 249 LDLSWNNINGSLESQ----GLADLPNLKILD 275 (290)
Q Consensus 249 L~l~~n~l~~~i~~~----~l~~l~~L~~L~ 275 (290)
|.|..|.-.|.-+.. .+.-+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 777777666544432 234456666554
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.42 E-value=6e-05 Score=68.21 Aligned_cols=115 Identities=24% Similarity=0.160 Sum_probs=51.3
Q ss_pred CCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCC-cCCCCc----hhhccCCCCCCEEEccCCC-CCCCcchhh
Q 022897 95 FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCN-FFNDSI----LPYLNTLTSLTTLILYSNS-IEGSGTMQG 168 (290)
Q Consensus 95 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~----~~~l~~l~~L~~L~l~~n~-~~~~~~~~~ 168 (290)
++.|+.+.+.++.--.. .........++.|+.|+++++ ...... ......+.+|+.|+++++. +++......
T Consensus 187 ~~~L~~l~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITD--DSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCCh--hhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 45666666555422111 011113445566666666542 111111 1122234566666666665 444333322
Q ss_pred cccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCC
Q 022897 169 LANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGI 212 (290)
Q Consensus 169 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 212 (290)
...+++|+.|.+..+...+...+.. ....++.|++|++++|..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~-i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVS-IAERCPSLRELDLSGCHG 307 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHH-HHHhcCcccEEeeecCcc
Confidence 2335566666655554211112222 344455566666665543
No 66
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.42 E-value=1.6e-06 Score=77.60 Aligned_cols=186 Identities=31% Similarity=0.326 Sum_probs=126.2
Q ss_pred CcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhh----ccCC-CCCCEEEccCCCCCCCcch---hhc
Q 022897 98 LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY----LNTL-TSLTTLILYSNSIEGSGTM---QGL 169 (290)
Q Consensus 98 L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l-~~L~~L~l~~n~~~~~~~~---~~~ 169 (290)
+..|.+.+|.+.......+...+.....|+.|++++|.+.+..... +... +.|++|++..|.++..... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7778888888887777777777888888999999988887533322 2232 5677788888887754332 234
Q ss_pred ccCCCCCeeeCCCCCCCCCCccch-hhhc----cCCCccEEEcCCCCCC------CCcCCCCCCC-CcEEEccCCCCCC-
Q 022897 170 ANLRYLQVLDLSWNENITSGSLTR-LGLA----NLTNLKELDLRGCGIT------TSQGLADLPN-LKTLDLRDCGITT- 236 (290)
Q Consensus 170 ~~l~~L~~L~l~~n~~~~~~~~~~-~~~~----~~~~L~~L~l~~n~l~------~~~~~~~l~~-L~~L~l~~n~l~~- 236 (290)
.....++.+++..|.+...+.... ..+. ...++++|++++|.++ ....+...++ +.+|++..|.+.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 456788888888888754443221 1233 4667888999988877 2234445555 6778888888876
Q ss_pred -----ccccccC-CCCCEEeCCCCCCCCcccc---cccCCCCCCCEEecCCCCCcc
Q 022897 237 -----IQGLAKL-KNLEALDLSWNNINGSLES---QGLADLPNLKILDLRDCGMTT 283 (290)
Q Consensus 237 -----~~~l~~~-~~L~~L~l~~n~l~~~i~~---~~l~~l~~L~~L~L~~n~l~~ 283 (290)
.+.+..+ ..+++++++.|.+++.-.. ..+..++.++.+.+++|++..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2345555 6778899999988753322 125556788888888888764
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.15 E-value=0.002 Score=47.13 Aligned_cols=119 Identities=17% Similarity=0.279 Sum_probs=46.9
Q ss_pred hccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCC
Q 022897 143 YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADL 221 (290)
Q Consensus 143 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l 221 (290)
.|.++.+|+.+.+.. .+. .+....+..+++|+.+.+..+ ...+....+..+++|+.+.+..+... ....+..+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~----~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN----LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNC 80 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST----TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc----ccccceeeeeccccccccccccccccccccccccc
Confidence 345566677666653 222 223345666666777766553 22344445566656666666542222 33344556
Q ss_pred CCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCC
Q 022897 222 PNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNL 271 (290)
Q Consensus 222 ~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L 271 (290)
++|+.+.+..+ +.. ...+... .|+.+.+.. .+. .++...|.++++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 66666666554 333 3344444 666666554 233 3444445555444
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.99 E-value=0.0022 Score=46.90 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=23.0
Q ss_pred CcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEcc
Q 022897 90 SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILY 156 (290)
Q Consensus 90 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 156 (290)
..|..+.+|+.+.+.. .+...... .|..++.|+.+.+..+ +.......|..+++|+.+.+.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~----~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGEN----AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TT----TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HHHhCCCCCCEEEECC-CeeEeChh----hccccccccccccccc-ccccceeeeeccccccccccc
Confidence 3445555566655543 23333222 4555555555555443 332222334444455555554
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=4.1e-05 Score=62.36 Aligned_cols=89 Identities=29% Similarity=0.383 Sum_probs=75.1
Q ss_pred CCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCC
Q 022897 199 LTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD 278 (290)
Q Consensus 199 ~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~ 278 (290)
+.+.+.|+.-+|.+.......+++.|+.|.|+-|.|+....+..++.|++|+|..|.|...-.-..+.++|+|+.|-|..
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 45678899999999866667889999999999999999999999999999999999987422223478999999999999
Q ss_pred CCCcccccc
Q 022897 279 CGMTTIQGK 287 (290)
Q Consensus 279 n~l~~~~~~ 287 (290)
|+-.|.-+.
T Consensus 98 NPCc~~ag~ 106 (388)
T KOG2123|consen 98 NPCCGEAGQ 106 (388)
T ss_pred CCcccccch
Confidence 988776553
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.58 E-value=0.00035 Score=63.19 Aligned_cols=62 Identities=31% Similarity=0.236 Sum_probs=25.3
Q ss_pred CCCCcEEECCCCc-CCCCchhhccC-CCCCCEEEccCCC-CCCCcchhhcccCCCCCeeeCCCCC
Q 022897 123 LKQLKILDLGCNF-FNDSILPYLNT-LTSLTTLILYSNS-IEGSGTMQGLANLRYLQVLDLSWNE 184 (290)
Q Consensus 123 l~~L~~L~l~~n~-l~~~~~~~l~~-l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~ 184 (290)
+++|+.|+++.+. ++......+.. +++|++|.+..|. +++.........++.|++|+++++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3444444444443 33322222222 4444444444444 3333333333344444444444444
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.57 E-value=3.2e-05 Score=69.39 Aligned_cols=168 Identities=27% Similarity=0.233 Sum_probs=116.8
Q ss_pred cCCCCCCCcEEECCCCcccCccchhhhhhcCCC-CCCcEEECCCCcCCCC----chhhccCCCCCCEEEccCCCCCCCc-
Q 022897 91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSL-KQLKILDLGCNFFNDS----ILPYLNTLTSLTTLILYSNSIEGSG- 164 (290)
Q Consensus 91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~- 164 (290)
.+...+.|+.|++++|.+.......+.+.+... ..+++|++..|.++.. +...+.....++.++++.|.+....
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence 456678899999999999865444444555554 6788888888887654 3455666888999999999874211
Q ss_pred --chhhcc----cCCCCCeeeCCCCCCCCCCcc-chhhhccCCC-ccEEEcCCCCCC------CCcCCCCC-CCCcEEEc
Q 022897 165 --TMQGLA----NLRYLQVLDLSWNENITSGSL-TRLGLANLTN-LKELDLRGCGIT------TSQGLADL-PNLKTLDL 229 (290)
Q Consensus 165 --~~~~~~----~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~-L~~L~l~~n~l~------~~~~~~~l-~~L~~L~l 229 (290)
.+..+. ...++++|.+.+|.+...... ....+...+. ++.|++..|.+. ..+.+..+ ..++.+++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL 269 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence 112233 467899999999886322211 1124555555 677899998876 23445555 68899999
Q ss_pred cCCCCCC------ccccccCCCCCEEeCCCCCCCC
Q 022897 230 RDCGITT------IQGLAKLKNLEALDLSWNNING 258 (290)
Q Consensus 230 ~~n~l~~------~~~l~~~~~L~~L~l~~n~l~~ 258 (290)
+.|.|++ ...+...+.++.+.+++|.+..
T Consensus 270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 270 SRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 9999987 3446667789999999998874
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.11 E-value=0.0045 Score=31.39 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=14.6
Q ss_pred CCCCEEecCCCCCcccccccC
Q 022897 269 PNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 269 ~~L~~L~L~~n~l~~~~~~~f 289 (290)
++|++|+|++|+|+.+++++|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456777777777777776666
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.11 E-value=0.0045 Score=31.39 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=14.6
Q ss_pred CCCCEEecCCCCCcccccccC
Q 022897 269 PNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 269 ~~L~~L~L~~n~l~~~~~~~f 289 (290)
++|++|+|++|+|+.+++++|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456777777777777776666
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.03 E-value=0.0026 Score=30.90 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=8.4
Q ss_pred CCEEecCCCCCcccc
Q 022897 271 LKILDLRDCGMTTIQ 285 (290)
Q Consensus 271 L~~L~L~~n~l~~~~ 285 (290)
|++|+|++|+|+.++
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 556666666666333
No 75
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.96 E-value=0.0044 Score=53.55 Aligned_cols=132 Identities=27% Similarity=0.291 Sum_probs=60.6
Q ss_pred CCCCCcEEECCCCcC-CCCchhhcc-CCCCCCEEEccCCC-CCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhcc
Q 022897 122 SLKQLKILDLGCNFF-NDSILPYLN-TLTSLTTLILYSNS-IEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLAN 198 (290)
Q Consensus 122 ~l~~L~~L~l~~n~l-~~~~~~~l~-~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 198 (290)
.+..|++|+.+++.. +......++ ++.+|++|.++.|+ |+.......-.+.+.|+.+++..+.....+++.. .-.+
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s-ls~~ 370 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS-LSRN 370 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh-hccC
Confidence 345555555554432 222222222 35566666666654 2221111122344556666666555433333332 3344
Q ss_pred CCCccEEEcCCCCCCCCc-------CCCCCCCCcEEEccCCCCCC---ccccccCCCCCEEeCCCC
Q 022897 199 LTNLKELDLRGCGITTSQ-------GLADLPNLKTLDLRDCGITT---IQGLAKLKNLEALDLSWN 254 (290)
Q Consensus 199 ~~~L~~L~l~~n~l~~~~-------~~~~l~~L~~L~l~~n~l~~---~~~l~~~~~L~~L~l~~n 254 (290)
++.|+.|.++.|.....+ .-..+..|+.+.++++..+. ...+..+++|+.+++..+
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 555666666655443211 11233455555555555444 334445555555555554
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.60 E-value=0.0046 Score=30.02 Aligned_cols=21 Identities=52% Similarity=0.686 Sum_probs=15.9
Q ss_pred CCCEEeCCCCCCCCcccccccCC
Q 022897 245 NLEALDLSWNNINGSLESQGLAD 267 (290)
Q Consensus 245 ~L~~L~l~~n~l~~~i~~~~l~~ 267 (290)
+|++||+++|.++ .+|.. |++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~-~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSS-FSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTT-TTT
T ss_pred CccEEECCCCcCE-eCChh-hcC
Confidence 4788888888888 78876 554
No 77
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.24 E-value=0.0096 Score=51.55 Aligned_cols=82 Identities=28% Similarity=0.438 Sum_probs=45.0
Q ss_pred CCCccEEEcCCCCCC----CCcCCCCCCCCcEEEccCCCCCCc---cc----cccCCCCCEEeCCCCCCCCcccccccCC
Q 022897 199 LTNLKELDLRGCGIT----TSQGLADLPNLKTLDLRDCGITTI---QG----LAKLKNLEALDLSWNNINGSLESQGLAD 267 (290)
Q Consensus 199 ~~~L~~L~l~~n~l~----~~~~~~~l~~L~~L~l~~n~l~~~---~~----l~~~~~L~~L~l~~n~l~~~i~~~~l~~ 267 (290)
.+.|+.+++..+... +...-.+++.|+.|.++.|....- .. -..+..|+.+.|+++..+.+.....+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 344555555555433 112223556677777776643331 11 2235567777777776654333333667
Q ss_pred CCCCCEEecCCCC
Q 022897 268 LPNLKILDLRDCG 280 (290)
Q Consensus 268 l~~L~~L~L~~n~ 280 (290)
+++|+.+++-+++
T Consensus 425 c~~Leri~l~~~q 437 (483)
T KOG4341|consen 425 CRNLERIELIDCQ 437 (483)
T ss_pred Ccccceeeeechh
Confidence 7788888777764
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.18 E-value=0.013 Score=26.37 Aligned_cols=14 Identities=43% Similarity=0.681 Sum_probs=5.4
Q ss_pred CCCEEecCCCCCcc
Q 022897 270 NLKILDLRDCGMTT 283 (290)
Q Consensus 270 ~L~~L~L~~n~l~~ 283 (290)
+|+.|+|++|+|+.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34555555555443
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.91 E-value=0.057 Score=27.20 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=17.1
Q ss_pred CCCCCEEeCCCCCCCCcccccccC
Q 022897 243 LKNLEALDLSWNNINGSLESQGLA 266 (290)
Q Consensus 243 ~~~L~~L~l~~n~l~~~i~~~~l~ 266 (290)
+++|+.|+|++|.+. .+|...|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 357888888888888 67776443
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.91 E-value=0.057 Score=27.20 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=17.1
Q ss_pred CCCCCEEeCCCCCCCCcccccccC
Q 022897 243 LKNLEALDLSWNNINGSLESQGLA 266 (290)
Q Consensus 243 ~~~L~~L~l~~n~l~~~i~~~~l~ 266 (290)
+++|+.|+|++|.+. .+|...|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 357888888888888 67776443
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.85 E-value=0.002 Score=51.45 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=41.8
Q ss_pred hccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCE
Q 022897 196 LANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKI 273 (290)
Q Consensus 196 ~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~ 273 (290)
+..+...+.|+++.|++. .-..++.+..+..|+++.|++.- |..++....++.+++.+|..+ ..|.+ ++..+.+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s-~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKS-QKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCcc-ccccCCcch
Confidence 333444445555555443 33334444455555555555544 444555555555555555554 45554 555555555
Q ss_pred EecCCCCC
Q 022897 274 LDLRDCGM 281 (290)
Q Consensus 274 L~L~~n~l 281 (290)
+++.+|.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 55555543
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.33 E-value=0.026 Score=44.23 Aligned_cols=80 Identities=25% Similarity=0.199 Sum_probs=42.3
Q ss_pred CcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCC-CchhhccC-CCCCCEEEccCCC-CCCCcchhhcccCCC
Q 022897 98 LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFND-SILPYLNT-LTSLTTLILYSNS-IEGSGTMQGLANLRY 174 (290)
Q Consensus 98 L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~-l~~L~~L~l~~n~-~~~~~~~~~~~~l~~ 174 (290)
++.++-++..|....-. .+..++.++.|.+.++.-.+ .-.+.+++ .++|+.|++++|. ++..... .+..+++
T Consensus 103 IeaVDAsds~I~~eGle----~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lkn 177 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLE----HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKN 177 (221)
T ss_pred EEEEecCCchHHHHHHH----HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhh
Confidence 55666666665544333 55666666666666554321 22222322 3566666666653 4443332 4555666
Q ss_pred CCeeeCCC
Q 022897 175 LQVLDLSW 182 (290)
Q Consensus 175 L~~L~l~~ 182 (290)
|+.|.+.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 66666544
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.98 E-value=0.032 Score=43.70 Aligned_cols=84 Identities=29% Similarity=0.246 Sum_probs=54.3
Q ss_pred CCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc-cCCCCCeeeCCCCCCCCCCccchhhhccCCCc
Q 022897 124 KQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA-NLRYLQVLDLSWNENITSGSLTRLGLANLTNL 202 (290)
Q Consensus 124 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 202 (290)
..++.+|-++..+.....+.+..++.++.|.+.+|.--+...-+-+. -.++|+.|++++|..++.+.+. .+..+++|
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~--~L~~lknL 178 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA--CLLKLKNL 178 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH--HHHHhhhh
Confidence 34677777777777666777777888888888877644322212222 3467888888888765544443 56677777
Q ss_pred cEEEcCC
Q 022897 203 KELDLRG 209 (290)
Q Consensus 203 ~~L~l~~ 209 (290)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 7776654
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.54 E-value=0.061 Score=26.51 Aligned_cols=16 Identities=44% Similarity=0.630 Sum_probs=7.5
Q ss_pred CCCCEEecCCCCCccc
Q 022897 269 PNLKILDLRDCGMTTI 284 (290)
Q Consensus 269 ~~L~~L~L~~n~l~~~ 284 (290)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4555555555555443
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=85.89 E-value=0.38 Score=43.51 Aligned_cols=64 Identities=27% Similarity=0.208 Sum_probs=35.4
Q ss_pred CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCC--CCCCCcCCCCC--CCCcEEEccCCCCCC
Q 022897 172 LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGC--GITTSQGLADL--PNLKTLDLRDCGITT 236 (290)
Q Consensus 172 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~l--~~L~~L~l~~n~l~~ 236 (290)
.+.+..+++++|.+.....+.. .....|+|..|+|++| .+.....+.+. ..|++|-+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~ss-lsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSS-LSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhH-HHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3456666666666655444443 4455566777777776 33322223322 346666677776655
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.75 E-value=0.89 Score=22.92 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=9.9
Q ss_pred CCCEEecCCCCCcccc
Q 022897 270 NLKILDLRDCGMTTIQ 285 (290)
Q Consensus 270 ~L~~L~L~~n~l~~~~ 285 (290)
+|+.|++++|+++..|
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 4666666666666554
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.50 E-value=1.5 Score=22.16 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=7.3
Q ss_pred CCCCEEecCCCCCc
Q 022897 269 PNLKILDLRDCGMT 282 (290)
Q Consensus 269 ~~L~~L~L~~n~l~ 282 (290)
.+|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.40 E-value=1.8 Score=22.15 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=10.4
Q ss_pred CCCCEEecCCCCCcc
Q 022897 269 PNLKILDLRDCGMTT 283 (290)
Q Consensus 269 ~~L~~L~L~~n~l~~ 283 (290)
++|++|+|++|.|..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467777777777753
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=76.08 E-value=1.5 Score=39.86 Aligned_cols=65 Identities=29% Similarity=0.289 Sum_probs=43.1
Q ss_pred hccCCCccEEEcCCCCCCCCcCC----CCCCCCcEEEccCC--CCCCcccccc--CCCCCEEeCCCCCCCCcc
Q 022897 196 LANLTNLKELDLRGCGITTSQGL----ADLPNLKTLDLRDC--GITTIQGLAK--LKNLEALDLSWNNINGSL 260 (290)
Q Consensus 196 ~~~~~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~l~~n--~l~~~~~l~~--~~~L~~L~l~~n~l~~~i 260 (290)
-.+.+.+..+.|++|++.-.+.+ ...++|..|+|++| .+.....+.+ ...|++|-+.+|++....
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 34567788888899888733333 34578889999988 5554333332 235888888898887543
No 90
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=75.33 E-value=0.065 Score=43.09 Aligned_cols=86 Identities=17% Similarity=0.123 Sum_probs=44.4
Q ss_pred cCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCC
Q 022897 145 NTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPN 223 (290)
Q Consensus 145 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~ 223 (290)
........||++.|.+-. ....++.++.+..|+++.|. ...+|. .+.....++.+++..|..+ .|.++...+.
T Consensus 39 ~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq---~~~~~~-d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQ---IKFLPK-DAKQQRETVNAASHKNNHSQQPKSQKKEPH 112 (326)
T ss_pred hccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhh---HhhChh-hHHHHHHHHHHHhhccchhhCCccccccCC
Confidence 344455556666555432 11234445555666666555 223333 4444555555555555555 5555566666
Q ss_pred CcEEEccCCCCCC
Q 022897 224 LKTLDLRDCGITT 236 (290)
Q Consensus 224 L~~L~l~~n~l~~ 236 (290)
++++++-+|.+..
T Consensus 113 ~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 113 PKKNEQKKTEFFR 125 (326)
T ss_pred cchhhhccCcchH
Confidence 6666555555443
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=56.89 E-value=8.9 Score=18.95 Aligned_cols=13 Identities=54% Similarity=0.945 Sum_probs=10.2
Q ss_pred CCCCCEEecCCCC
Q 022897 268 LPNLKILDLRDCG 280 (290)
Q Consensus 268 l~~L~~L~L~~n~ 280 (290)
+++|++|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4678888888885
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=51.92 E-value=40 Score=30.53 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=10.7
Q ss_pred CCCCcEEECCCCcCCCCch
Q 022897 123 LKQLKILDLGCNFFNDSIL 141 (290)
Q Consensus 123 l~~L~~L~l~~n~l~~~~~ 141 (290)
.+.+++++++-|.+....|
T Consensus 164 npr~r~~dls~npi~dkvp 182 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVP 182 (553)
T ss_pred cchhhhhccCCCcccccCC
Confidence 4555666666666554443
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=43.96 E-value=1.5e+02 Score=27.17 Aligned_cols=105 Identities=19% Similarity=0.064 Sum_probs=54.8
Q ss_pred CCCeeeCCCCCCCCCCccch-hhhccCCCccEEEcCCCCCC---CCcC----C----CCCCCCcEEEccCCCCCC-c---
Q 022897 174 YLQVLDLSWNENITSGSLTR-LGLANLTNLKELDLRGCGIT---TSQG----L----ADLPNLKTLDLRDCGITT-I--- 237 (290)
Q Consensus 174 ~L~~L~l~~n~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~---~~~~----~----~~l~~L~~L~l~~n~l~~-~--- 237 (290)
.+++|.+..|.. .+.... ......+.++.+++.+.... .+.. + ....-+..+.++.|.+.. +
T Consensus 355 R~q~l~~rdnnl--dgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~ 432 (553)
T KOG4242|consen 355 RVQVLLQRDNNL--DGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESA 432 (553)
T ss_pred eeeEeecccccc--ccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHH
Confidence 477777777766 332221 13344456677766654331 1110 1 112246677777776655 2
Q ss_pred -cccccCCCCCEEeCCCCCCCC----cccccccCCCCCCCEEecCCCCC
Q 022897 238 -QGLAKLKNLEALDLSWNNING----SLESQGLADLPNLKILDLRDCGM 281 (290)
Q Consensus 238 -~~l~~~~~L~~L~l~~n~l~~----~i~~~~l~~l~~L~~L~L~~n~l 281 (290)
..+..-+.+..|++++|.... .+|.. +.....++.+..+.|..
T Consensus 433 in~l~stqtl~kldisgn~mgd~gap~lpka-lq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 433 INKLLSTQTLAKLDISGNGMGDGGAPPLPKA-LQSNCRLRPIPDSLNLP 480 (553)
T ss_pred HHhhccCcccccccccCCCcccCCCCcCccc-cCCCCccCCCCCCCCCc
Confidence 234455678888888887652 12222 33334566666665533
No 94
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=27.20 E-value=1.1e+02 Score=24.81 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=5.5
Q ss_pred ccEEEcCCCCCCC
Q 022897 202 LKELDLRGCGITT 214 (290)
Q Consensus 202 L~~L~l~~n~l~~ 214 (290)
++--.|.+|++..
T Consensus 198 ~eGA~L~gcNfed 210 (302)
T KOG1665|consen 198 AEGASLKGCNFED 210 (302)
T ss_pred cccccccCcCCCC
Confidence 3334444444443
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.11 E-value=61 Score=36.12 Aligned_cols=32 Identities=28% Similarity=0.331 Sum_probs=26.1
Q ss_pred ECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCC
Q 022897 102 NLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFN 137 (290)
Q Consensus 102 ~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 137 (290)
+|++|+|....+. .|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g----~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEG----ICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChH----HhccCCCceEEEeeCCccc
Confidence 5788888877766 7888889999999988775
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.14 E-value=69 Score=35.77 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=22.3
Q ss_pred ccccccCCCcCCCCCCCcEEECCCCccc
Q 022897 82 TSASLLNMSLFHPFEELQSLNLSDNWFR 109 (290)
Q Consensus 82 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 109 (290)
+.+..++...|..+++|++|+|++|.+.
T Consensus 5 N~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 5 NKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CcCCccChHHhccCCCceEEEeeCCccc
Confidence 3456677788888999999999998764
No 97
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=20.27 E-value=51 Score=26.24 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=7.8
Q ss_pred CCCccccHHHH
Q 022897 2 HGYKGCLETER 12 (290)
Q Consensus 2 ~~~~~~~~~~~ 12 (290)
+||.+|++.|+
T Consensus 8 QGCsSCPpAD~ 18 (202)
T PF06764_consen 8 QGCSSCPPADR 18 (202)
T ss_dssp TT-TT-HHHHH
T ss_pred CCCCCCcHHHH
Confidence 69999999984
Done!