Query 022897
Match_columns 290
No_of_seqs 292 out of 3977
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 12:58:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2E-37 6.9E-42 263.6 17.4 260 5-288 1-287 (313)
2 3rgz_A Protein brassinosteroid 100.0 6.4E-33 2.2E-37 262.4 18.7 261 4-289 6-289 (768)
3 4fcg_A Uncharacterized protein 100.0 3.5E-33 1.2E-37 238.9 12.9 256 5-289 22-297 (328)
4 4eco_A Uncharacterized protein 100.0 5.4E-32 1.9E-36 250.9 13.8 259 6-288 26-421 (636)
5 4ecn_A Leucine-rich repeat pro 100.0 2.1E-31 7.2E-36 252.3 16.7 250 5-282 264-632 (876)
6 3zyj_A Leucine-rich repeat-con 100.0 6.2E-27 2.1E-31 208.0 22.5 237 45-289 35-275 (440)
7 2z66_A Variable lymphocyte rec 100.0 1.2E-27 4.2E-32 202.6 16.9 227 45-289 1-243 (306)
8 3zyi_A Leucine-rich repeat-con 100.0 7.1E-27 2.4E-31 208.3 22.5 229 45-290 46-287 (452)
9 1ozn_A Reticulon 4 receptor; N 99.9 3E-26 1E-30 192.1 21.7 195 83-286 43-242 (285)
10 2o6q_A Variable lymphocyte rec 99.9 6.6E-26 2.3E-30 188.6 21.7 215 48-285 3-221 (270)
11 3rgz_A Protein brassinosteroid 99.9 4.9E-26 1.7E-30 215.3 19.6 188 92-287 462-722 (768)
12 2z80_A TOLL-like receptor 2, v 99.9 3.1E-26 1.1E-30 197.8 14.1 223 46-286 26-318 (353)
13 3v47_A TOLL-like receptor 5B a 99.9 5.5E-25 1.9E-29 196.1 21.1 93 89-185 72-166 (455)
14 3oja_B Anopheles plasmodium-re 99.9 2.3E-25 7.7E-30 205.2 18.5 192 84-284 63-293 (597)
15 1xku_A Decorin; proteoglycan, 99.9 1.1E-24 3.8E-29 186.3 21.6 225 45-289 25-283 (330)
16 3o6n_A APL1; leucine-rich repe 99.9 3.1E-25 1.1E-29 194.0 18.5 122 84-213 57-178 (390)
17 2ft3_A Biglycan; proteoglycan, 99.9 6.6E-25 2.3E-29 187.9 19.9 225 45-289 27-284 (332)
18 1ogq_A PGIP-2, polygalacturona 99.9 4.5E-26 1.6E-30 193.6 10.4 191 88-289 68-264 (313)
19 1ozn_A Reticulon 4 receptor; N 99.9 3.8E-24 1.3E-28 179.3 21.0 186 95-289 31-221 (285)
20 2id5_A Lingo-1, leucine rich r 99.9 6.8E-25 2.3E-29 196.8 15.7 227 45-289 3-268 (477)
21 3v47_A TOLL-like receptor 5B a 99.9 7.9E-24 2.7E-28 188.6 20.4 199 86-289 93-391 (455)
22 2z62_A TOLL-like receptor 4, v 99.9 4.1E-24 1.4E-28 178.3 16.8 206 64-286 29-241 (276)
23 4fcg_A Uncharacterized protein 99.9 1.2E-24 4E-29 186.0 13.4 183 95-289 80-273 (328)
24 3zyj_A Leucine-rich repeat-con 99.9 9.3E-24 3.2E-28 187.6 19.1 189 84-282 100-292 (440)
25 3zyi_A Leucine-rich repeat-con 99.9 1.5E-23 5.3E-28 186.8 18.6 190 84-283 111-304 (452)
26 2id5_A Lingo-1, leucine rich r 99.9 3.4E-23 1.2E-27 185.7 17.9 190 91-289 99-292 (477)
27 3t6q_A CD180 antigen; protein- 99.9 3E-23 1E-27 191.4 17.6 191 90-289 344-543 (606)
28 3o6n_A APL1; leucine-rich repe 99.9 1.7E-22 6E-27 176.6 20.9 97 84-185 81-177 (390)
29 2xwt_C Thyrotropin receptor; s 99.9 1.6E-23 5.6E-28 170.9 13.4 182 97-289 32-225 (239)
30 3t6q_A CD180 antigen; protein- 99.9 3.6E-23 1.2E-27 190.8 17.1 119 53-185 14-141 (606)
31 1wwl_A Monocyte differentiatio 99.9 1E-23 3.4E-28 179.0 12.2 182 93-284 118-311 (312)
32 1p9a_G Platelet glycoprotein I 99.9 1.3E-22 4.4E-27 170.4 18.6 196 63-283 10-209 (290)
33 3rfs_A Internalin B, repeat mo 99.9 5.4E-23 1.8E-27 171.2 16.1 179 92-288 59-241 (272)
34 2z81_A CD282 antigen, TOLL-lik 99.9 1.4E-23 4.7E-28 191.4 13.4 217 50-283 4-237 (549)
35 2z66_A Variable lymphocyte rec 99.9 3.9E-23 1.3E-27 174.8 14.3 184 92-285 74-264 (306)
36 3rfs_A Internalin B, repeat mo 99.9 3.9E-22 1.3E-26 166.0 20.1 184 91-287 36-223 (272)
37 3oja_B Anopheles plasmodium-re 99.9 2.1E-22 7.2E-27 185.4 20.3 97 84-185 87-183 (597)
38 3m19_A Variable lymphocyte rec 99.9 2E-22 7E-27 165.7 17.7 188 48-259 3-194 (251)
39 2z80_A TOLL-like receptor 2, v 99.9 1.2E-23 3.9E-28 181.7 10.4 174 84-261 88-318 (353)
40 4glp_A Monocyte differentiatio 99.9 3.6E-23 1.2E-27 175.5 13.0 186 93-283 114-308 (310)
41 2z62_A TOLL-like receptor 4, v 99.9 8.5E-23 2.9E-27 170.3 14.6 185 96-290 28-221 (276)
42 4g8a_A TOLL-like receptor 4; l 99.9 7.1E-22 2.4E-26 182.6 22.0 96 86-185 90-185 (635)
43 1p9a_G Platelet glycoprotein I 99.9 6.8E-22 2.3E-26 166.0 19.5 156 91-257 50-208 (290)
44 3j0a_A TOLL-like receptor 5; m 99.9 3E-22 1E-26 191.2 19.2 196 86-289 63-358 (844)
45 3m19_A Variable lymphocyte rec 99.9 1.1E-21 3.8E-26 161.3 19.9 178 96-285 14-195 (251)
46 2o6q_A Variable lymphocyte rec 99.9 1.3E-21 4.4E-26 162.6 20.1 191 52-259 17-220 (270)
47 1h6u_A Internalin H; cell adhe 99.9 1E-21 3.5E-26 166.3 19.7 195 62-286 40-234 (308)
48 2o6s_A Variable lymphocyte rec 99.9 2.6E-22 9E-27 160.3 15.1 175 95-287 27-203 (208)
49 3oja_A Leucine-rich immune mol 99.9 1.2E-22 4.2E-27 182.4 13.8 202 64-286 35-255 (487)
50 4eco_A Uncharacterized protein 99.9 1.7E-23 5.9E-28 193.9 8.3 192 89-289 240-477 (636)
51 1wwl_A Monocyte differentiatio 99.9 9.3E-24 3.2E-28 179.3 5.5 180 94-285 93-290 (312)
52 3vq2_A TLR4, TOLL-like recepto 99.9 2E-22 6.7E-27 185.9 14.6 184 92-284 346-536 (606)
53 1ziw_A TOLL-like receptor 3; i 99.9 7.8E-22 2.7E-26 184.3 18.8 198 85-289 394-604 (680)
54 1ziw_A TOLL-like receptor 3; i 99.9 5.7E-22 2E-26 185.2 17.6 189 92-289 69-292 (680)
55 1xku_A Decorin; proteoglycan, 99.9 1.6E-21 5.6E-26 166.6 18.7 177 96-284 52-255 (330)
56 3o53_A Protein LRIM1, AGAP0063 99.9 7.4E-23 2.5E-27 174.1 10.2 203 64-286 35-255 (317)
57 2xwt_C Thyrotropin receptor; s 99.9 3.5E-22 1.2E-26 163.1 13.5 183 84-280 43-237 (239)
58 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.4E-21 8.1E-26 177.2 20.1 91 197-287 350-446 (562)
59 2z7x_B TOLL-like receptor 1, v 99.9 1.4E-21 4.7E-26 177.1 18.2 92 197-288 321-418 (520)
60 2ft3_A Biglycan; proteoglycan, 99.9 2.6E-21 8.8E-26 165.6 17.9 195 84-289 90-316 (332)
61 3vq2_A TLR4, TOLL-like recepto 99.9 7.2E-22 2.5E-26 182.1 15.4 187 89-286 369-562 (606)
62 4fmz_A Internalin; leucine ric 99.9 1E-20 3.5E-25 162.7 20.6 181 92-286 128-328 (347)
63 4ecn_A Leucine-rich repeat pro 99.9 3.6E-22 1.2E-26 189.4 12.4 189 89-288 441-663 (876)
64 3oja_A Leucine-rich immune mol 99.9 6.5E-22 2.2E-26 177.7 12.3 185 92-287 30-232 (487)
65 2z63_A TOLL-like receptor 4, v 99.9 1.5E-21 5E-26 178.6 14.7 186 93-287 344-536 (570)
66 3j0a_A TOLL-like receptor 5; m 99.9 2.6E-21 9.1E-26 184.7 16.3 145 52-213 15-161 (844)
67 1h6u_A Internalin H; cell adhe 99.9 1.4E-20 4.7E-25 159.4 18.6 176 92-286 37-212 (308)
68 1h6t_A Internalin B; cell adhe 99.9 8.8E-21 3E-25 159.3 16.8 176 92-286 42-217 (291)
69 4fmz_A Internalin; leucine ric 99.9 6.3E-20 2.2E-24 157.7 21.2 186 90-288 104-306 (347)
70 3bz5_A Internalin-J, INLJ; leu 99.9 7E-20 2.4E-24 163.2 21.5 173 92-289 81-253 (457)
71 2z7x_B TOLL-like receptor 1, v 99.9 1.6E-20 5.4E-25 170.1 17.2 161 121-286 321-485 (520)
72 1o6v_A Internalin A; bacterial 99.9 5.5E-20 1.9E-24 164.4 20.4 173 94-285 219-391 (466)
73 3cvr_A Invasion plasmid antige 99.8 9.3E-21 3.2E-25 172.2 13.8 193 52-289 49-250 (571)
74 1o6v_A Internalin A; bacterial 99.8 1.5E-19 5.2E-24 161.5 21.5 178 92-286 173-370 (466)
75 2ast_B S-phase kinase-associat 99.8 1.3E-21 4.4E-26 167.5 7.4 180 92-279 89-282 (336)
76 2z81_A CD282 antigen, TOLL-lik 99.8 7.8E-21 2.7E-25 173.2 12.2 181 96-284 26-211 (549)
77 4glp_A Monocyte differentiatio 99.8 3.1E-21 1.1E-25 163.5 8.6 181 95-284 90-287 (310)
78 1m9s_A Internalin B; cell inva 99.8 5.1E-20 1.8E-24 168.9 17.2 174 93-285 40-213 (605)
79 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.1E-20 1.8E-24 168.4 16.4 161 121-286 350-514 (562)
80 2z63_A TOLL-like receptor 4, v 99.8 1.5E-20 5.2E-25 171.9 12.6 203 64-286 29-321 (570)
81 2o6s_A Variable lymphocyte rec 99.8 1.1E-19 3.8E-24 145.0 14.7 172 99-289 10-185 (208)
82 3bz5_A Internalin-J, INLJ; leu 99.8 1.2E-18 4E-23 155.3 21.5 188 62-285 41-228 (457)
83 2ca6_A RAN GTPase-activating p 99.8 2.4E-21 8.1E-26 169.2 3.9 193 93-285 91-319 (386)
84 2ast_B S-phase kinase-associat 99.8 4E-21 1.4E-25 164.5 4.8 191 90-289 112-313 (336)
85 4ay9_X Follicle-stimulating ho 99.8 1.3E-19 4.3E-24 156.2 13.9 224 45-279 2-233 (350)
86 1xeu_A Internalin C; cellular 99.8 3.4E-20 1.2E-24 153.4 9.8 171 96-286 19-189 (263)
87 3e6j_A Variable lymphocyte rec 99.8 1E-18 3.4E-23 141.6 17.6 157 46-236 15-173 (229)
88 2ca6_A RAN GTPase-activating p 99.8 6.6E-21 2.3E-25 166.3 4.8 214 63-283 32-288 (386)
89 3o53_A Protein LRIM1, AGAP0063 99.8 6.6E-20 2.3E-24 155.8 10.7 186 90-286 28-231 (317)
90 2v9t_B SLIT homolog 2 protein 99.8 1E-18 3.4E-23 140.7 15.8 133 96-236 32-166 (220)
91 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-18 3.7E-23 140.5 14.6 153 98-261 13-170 (220)
92 3e6j_A Variable lymphocyte rec 99.8 3.4E-18 1.1E-22 138.5 17.5 153 97-260 20-175 (229)
93 4ezg_A Putative uncharacterize 99.8 2.8E-19 9.6E-24 141.5 10.1 151 122-283 42-195 (197)
94 3goz_A Leucine-rich repeat-con 99.8 2.5E-20 8.4E-25 161.4 4.1 217 64-286 23-270 (362)
95 4g8a_A TOLL-like receptor 4; l 99.8 1.7E-18 5.9E-23 159.9 16.2 178 96-283 52-238 (635)
96 2xot_A Amphoterin-induced prot 99.8 9.6E-19 3.3E-23 151.3 13.6 155 96-258 39-203 (361)
97 3goz_A Leucine-rich repeat-con 99.8 4.5E-20 1.5E-24 159.7 4.5 217 64-286 52-301 (362)
98 1h6t_A Internalin B; cell adhe 99.8 4E-18 1.4E-22 143.0 16.2 169 98-285 26-194 (291)
99 3g06_A SSPH2 (leucine-rich rep 99.8 2.8E-18 9.5E-23 157.7 16.4 83 200-289 221-304 (622)
100 2xot_A Amphoterin-induced prot 99.8 1.3E-18 4.3E-23 150.6 13.1 151 126-281 41-201 (361)
101 4ezg_A Putative uncharacterize 99.8 8.5E-19 2.9E-23 138.7 10.8 154 93-258 41-195 (197)
102 2v9t_B SLIT homolog 2 protein 99.8 5.7E-18 2E-22 136.3 14.9 149 99-258 14-166 (220)
103 1m9s_A Internalin B; cell inva 99.8 6.8E-18 2.3E-22 154.8 16.9 170 62-258 42-211 (605)
104 4ay9_X Follicle-stimulating ho 99.8 1.4E-18 4.8E-23 149.6 11.6 187 96-290 30-223 (350)
105 3g06_A SSPH2 (leucine-rich rep 99.8 2.6E-18 8.8E-23 157.9 13.2 57 222-285 221-277 (622)
106 4b8c_D Glucose-repressible alc 99.8 1.1E-19 3.9E-24 170.3 3.7 196 7-236 129-330 (727)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-17 4.4E-22 134.2 13.6 134 96-236 32-167 (220)
108 1z7x_W Ribonuclease inhibitor; 99.8 4.8E-20 1.6E-24 164.4 -0.7 187 97-284 200-413 (461)
109 1z7x_W Ribonuclease inhibitor; 99.8 5.8E-20 2E-24 163.8 -0.4 61 223-283 314-384 (461)
110 3cvr_A Invasion plasmid antige 99.7 5.1E-17 1.7E-21 147.7 17.3 160 97-289 60-227 (571)
111 1dce_A Protein (RAB geranylger 99.7 3.1E-20 1.1E-24 169.3 -5.0 185 93-288 346-552 (567)
112 1jl5_A Outer protein YOPM; leu 99.7 3E-16 1E-20 139.6 19.9 161 96-283 131-291 (454)
113 1xeu_A Internalin C; cellular 99.7 1.5E-17 5.1E-22 137.5 10.4 152 91-259 36-187 (263)
114 1jl5_A Outer protein YOPM; leu 99.7 4.3E-16 1.5E-20 138.6 20.5 143 91-258 148-291 (454)
115 2ell_A Acidic leucine-rich nuc 99.7 5.9E-17 2E-21 124.7 9.7 129 123-257 23-160 (168)
116 4b8c_D Glucose-repressible alc 99.7 6.8E-18 2.3E-22 158.3 4.4 181 96-289 173-361 (727)
117 1w8a_A SLIT protein; signaling 99.7 1.1E-15 3.7E-20 120.3 13.2 130 127-262 11-144 (192)
118 1w8a_A SLIT protein; signaling 99.7 1.7E-15 6E-20 119.1 13.9 128 98-236 10-140 (192)
119 2je0_A Acidic leucine-rich nuc 99.7 3.2E-16 1.1E-20 118.1 8.9 107 124-236 17-127 (149)
120 2ell_A Acidic leucine-rich nuc 99.7 2.6E-16 9E-21 121.0 8.2 135 146-287 22-165 (168)
121 2o6r_A Variable lymphocyte rec 99.6 3.8E-15 1.3E-19 115.5 14.5 110 96-213 28-137 (177)
122 2je0_A Acidic leucine-rich nuc 99.6 1.9E-15 6.6E-20 113.8 9.9 126 95-230 16-148 (149)
123 2o6r_A Variable lymphocyte rec 99.6 1.4E-14 4.8E-19 112.3 13.8 129 126-261 9-141 (177)
124 2wfh_A SLIT homolog 2 protein 99.6 1.5E-14 5.3E-19 113.7 13.6 124 127-258 13-140 (193)
125 2wfh_A SLIT homolog 2 protein 99.6 2.1E-14 7.1E-19 113.0 13.3 109 96-213 31-139 (193)
126 1dce_A Protein (RAB geranylger 99.6 1.8E-17 6.1E-22 151.1 -6.3 176 89-276 365-567 (567)
127 3sb4_A Hypothetical leucine ri 99.6 1.1E-14 3.6E-19 124.3 10.7 89 199-290 225-318 (329)
128 1a9n_A U2A', U2A'; complex (nu 99.6 6.4E-15 2.2E-19 114.1 7.7 129 121-257 16-153 (176)
129 1a9n_A U2A', U2A'; complex (nu 99.5 1E-14 3.5E-19 113.0 7.1 132 143-283 14-154 (176)
130 3sb4_A Hypothetical leucine ri 99.5 7.1E-14 2.4E-18 119.1 12.2 180 86-276 83-328 (329)
131 1ds9_A Outer arm dynein; leuci 99.5 1.9E-17 6.5E-22 131.0 -10.5 131 143-282 43-185 (198)
132 3un9_A NLR family member X1; l 99.5 9E-16 3.1E-20 132.9 -1.1 187 95-283 71-284 (372)
133 3un9_A NLR family member X1; l 99.5 3E-15 1E-19 129.6 0.3 161 123-285 71-255 (372)
134 3ogk_B Coronatine-insensitive 99.5 6.2E-15 2.1E-19 135.3 1.9 86 94-181 162-251 (592)
135 3ogk_B Coronatine-insensitive 99.5 2.3E-14 7.7E-19 131.6 4.6 153 121-277 161-326 (592)
136 3g39_A Variable lymphocyte rec 99.4 7.5E-13 2.6E-17 101.8 11.6 102 150-258 11-116 (170)
137 2r9u_A Variable lymphocyte rec 99.4 1.2E-12 4E-17 101.1 11.8 100 151-257 15-118 (174)
138 3g39_A Variable lymphocyte rec 99.4 1.5E-12 5.3E-17 100.1 12.3 85 96-185 30-114 (170)
139 1ds9_A Outer arm dynein; leuci 99.4 5.8E-16 2E-20 122.4 -8.9 115 167-287 42-158 (198)
140 4fdw_A Leucine rich hypothetic 99.4 2.1E-11 7.1E-16 106.5 16.4 183 90-289 174-365 (401)
141 2p1m_B Transport inhibitor res 99.4 2.2E-14 7.5E-19 131.7 -3.1 184 94-283 287-520 (594)
142 2p1m_B Transport inhibitor res 99.4 3.7E-14 1.3E-18 130.2 -1.7 175 95-276 129-345 (594)
143 2ifg_A High affinity nerve gro 99.3 9.7E-12 3.3E-16 106.6 11.9 89 92-186 27-116 (347)
144 2r9u_A Variable lymphocyte rec 99.3 1.6E-11 5.3E-16 94.8 11.9 85 96-185 33-117 (174)
145 4fdw_A Leucine rich hypothetic 99.3 7E-11 2.4E-15 103.1 16.9 160 119-290 175-343 (401)
146 2ifg_A High affinity nerve gro 99.2 1.2E-10 4.2E-15 99.7 11.0 100 152-258 12-117 (347)
147 2ra8_A Uncharacterized protein 99.0 2.6E-10 9E-15 98.0 6.9 182 92-280 135-341 (362)
148 2ra8_A Uncharacterized protein 98.9 4.9E-10 1.7E-14 96.3 4.5 160 119-284 134-322 (362)
149 1io0_A Tropomodulin; LRR prote 98.9 8.8E-10 3E-14 85.7 4.4 122 91-213 31-164 (185)
150 3rw6_A Nuclear RNA export fact 98.9 4E-10 1.4E-14 92.3 1.2 153 49-206 77-257 (267)
151 1io0_A Tropomodulin; LRR prote 98.8 1.6E-09 5.5E-14 84.3 3.3 43 119-161 31-78 (185)
152 3rw6_A Nuclear RNA export fact 98.6 3.7E-09 1.3E-13 86.6 -0.4 79 197-275 167-257 (267)
153 4fs7_A Uncharacterized protein 98.5 2.3E-06 7.8E-11 74.4 15.2 182 88-279 154-376 (394)
154 4gt6_A Cell surface protein; l 98.4 5.7E-06 2E-10 71.8 14.7 60 217-279 306-367 (394)
155 4fs7_A Uncharacterized protein 98.3 6.4E-06 2.2E-10 71.6 12.2 63 87-155 62-124 (394)
156 4h09_A Hypothetical leucine ri 98.2 4.7E-05 1.6E-09 65.6 16.4 137 144-289 213-352 (379)
157 3e4g_A ATP synthase subunit S, 98.2 4.4E-07 1.5E-11 69.2 2.4 85 96-185 61-151 (176)
158 4gt6_A Cell surface protein; l 98.2 0.00013 4.4E-09 63.2 18.2 91 195-289 260-353 (394)
159 4h09_A Hypothetical leucine ri 98.2 9.3E-05 3.2E-09 63.7 17.1 93 195-290 235-330 (379)
160 3e4g_A ATP synthase subunit S, 98.1 8.4E-07 2.9E-11 67.6 2.4 82 149-233 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 98.1 7.1E-06 2.4E-10 63.7 6.7 119 92-211 37-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.9 7.9E-06 2.7E-10 63.4 4.7 43 119-161 36-83 (197)
163 3rfe_A Platelet glycoprotein I 97.3 0.00052 1.8E-08 49.5 6.0 52 204-257 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.012 4E-07 42.3 6.7 35 126-160 33-67 (130)
165 2lz0_A Uncharacterized protein 73.0 6.9 0.00024 26.1 5.0 47 83-134 7-53 (100)
166 2lz0_A Uncharacterized protein 47.6 24 0.00081 23.4 4.0 39 119-158 15-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2e-37 Score=263.65 Aligned_cols=260 Identities=24% Similarity=0.339 Sum_probs=189.1
Q ss_pred ccccHHHHHHHHHHhhhhhccCCCCCCCCCCCCCcCCCCCCCCCCCCC--CCceEecccc--CcEEeecccccccccc--
Q 022897 5 KGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDD--WEGVKCNATT--RRVMQLSLTYTERLNY-- 78 (290)
Q Consensus 5 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~--w~gv~c~~~~--~~v~~l~l~~~~~l~~-- 78 (290)
+.|.++|++||++||+++.+ + ..+.+|.. +.+|| . |.||.|+... ++|+.++++++. +..
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~--~-----~~l~~W~~-----~~~~C-~~~w~gv~C~~~~~~~~l~~L~L~~~~-l~~~~ 66 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGN--P-----TTLSSWLP-----TTDCC-NRTWLGVLCDTDTQTYRVNNLDLSGLN-LPKPY 66 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTC--C-----GGGTTCCT-----TSCTT-TTCSTTEEECCSSSCCCEEEEEEECCC-CSSCE
T ss_pred CCCCHHHHHHHHHHHHhcCC--c-----ccccCCCC-----CCCCC-cCCCcceEeCCCCCCceEEEEECCCCC-ccCCc
Confidence 46999999999999999976 4 26899986 56788 6 9999997544 789999999876 111
Q ss_pred --------------ccc---ccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch
Q 022897 79 --------------YDR---TSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL 141 (290)
Q Consensus 79 --------------l~~---~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 141 (290)
++. ..+....+..++.+++|++|++++|.+.+..+. .|..+++|++|++++|.+.+.+|
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p 142 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD----FLSQIKTLVTLDFSYNALSGTLP 142 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG----GGGGCTTCCEEECCSSEEESCCC
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH----HHhCCCCCCEEeCCCCccCCcCC
Confidence 000 111112233455666666666666666655554 56667777777777777766666
Q ss_pred hhccCCCCCCEEEccCCCCCCCcchhhcccCC-CCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCC
Q 022897 142 PYLNTLTSLTTLILYSNSIEGSGTMQGLANLR-YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGL 218 (290)
Q Consensus 142 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~ 218 (290)
..+..+++|++|++++|.+++..+ ..+..++ +|++|++++|.+ .+.++. .+..++ |++|++++|.++ .+..+
T Consensus 143 ~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~~L~~L~L~~N~l--~~~~~~-~~~~l~-L~~L~Ls~N~l~~~~~~~~ 217 (313)
T 1ogq_A 143 PSISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNRL--TGKIPP-TFANLN-LAFVDLSRNMLEGDASVLF 217 (313)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSSEE--EEECCG-GGGGCC-CSEEECCSSEEEECCGGGC
T ss_pred hHHhcCCCCCeEECcCCcccCcCC-HHHhhhhhcCcEEECcCCee--eccCCh-HHhCCc-ccEEECcCCcccCcCCHHH
Confidence 667777777777777777765444 3556665 677777777765 444554 566665 778888887776 56677
Q ss_pred CCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccccc
Q 022897 219 ADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKI 288 (290)
Q Consensus 219 ~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 288 (290)
..+++|++|++++|.+++ ++.+..+++|++|++++|.+++.+|.. +..+++|++|+|++|+++|.+|..
T Consensus 218 ~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG-GGGCTTCCEEECCSSEEEEECCCS
T ss_pred hcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH-HhcCcCCCEEECcCCcccccCCCC
Confidence 888899999999998887 566788889999999999998888877 888999999999999999888864
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.4e-33 Score=262.37 Aligned_cols=261 Identities=24% Similarity=0.300 Sum_probs=199.3
Q ss_pred CccccHHHHHHHHHHhhhhhccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCceEeccccCcEEeecccccccccc---cc
Q 022897 4 YKGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNY---YD 80 (290)
Q Consensus 4 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~c~~~~~~v~~l~l~~~~~l~~---l~ 80 (290)
.+.+.++|++||++||+++.+ | . .+++|.. +.+|| .|.||.|+ .++|+.++|++..-... +.
T Consensus 6 ~~~~~~~~~~all~~k~~~~~--~----~-~l~~W~~-----~~~~C-~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~ 70 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPD--K----N-LLPDWSS-----NKNPC-TFDGVTCR--DDKVTSIDLSSKPLNVGFSAVS 70 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSC--T----T-SSTTCCT-----TSCGG-GSTTEEEE--TTEEEEEECTTSCCCEEHHHHH
T ss_pred cccCCHHHHHHHHHHHhhCCC--c----c-cccCCCC-----CCCCc-CCcceEEC--CCcEEEEECCCCCcCCccCccC
Confidence 445788999999999999986 4 4 7899985 67888 99999997 68999999998651110 00
Q ss_pred -------------cccccc-cCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhc-c
Q 022897 81 -------------RTSASL-LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL-N 145 (290)
Q Consensus 81 -------------~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~ 145 (290)
....+. ..+..++.+++|++|++++|.+.+.++.. ..++.+++|++|++++|.+.+..|..+ .
T Consensus 71 ~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 71 SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred hhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 000001 01245778888999999998888755531 156788889999999988887777665 6
Q ss_pred CCCCCCEEEccCCCCCCCcchh--hcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCC
Q 022897 146 TLTSLTTLILYSNSIEGSGTMQ--GLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLP 222 (290)
Q Consensus 146 ~l~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~ 222 (290)
++++|++|++++|.+++..+.. .+..+++|++|++++|.+ .+..+ +..+++|++|++++|.++ ..+.+..++
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~l~~l~ 223 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI--SGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGDCS 223 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEE--ESCCB---CTTCTTCCEEECCSSCCCSCCCBCTTCC
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcc--cccCC---cccCCcCCEEECcCCcCCCCCcccccCC
Confidence 7889999999999887654431 167888899999998887 44333 377888999999999887 344488899
Q ss_pred CCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 223 NLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 223 ~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
+|++|++++|.+++ +..+..+++|++|++++|.+++.+|.. .+++|++|++++|++++.+|..+
T Consensus 224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~ 289 (768)
T 3rgz_A 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFL 289 (768)
T ss_dssp SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCS
T ss_pred CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHH
Confidence 99999999999987 677888999999999999988777653 78899999999999998777654
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=3.5e-33 Score=238.90 Aligned_cols=256 Identities=21% Similarity=0.249 Sum_probs=212.6
Q ss_pred ccccHHHHHHHHHHhhhhhccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCceEecc--------ccCcEEeecccccccc
Q 022897 5 KGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNA--------TTRRVMQLSLTYTERL 76 (290)
Q Consensus 5 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~c~~--------~~~~v~~l~l~~~~~l 76 (290)
.++..+|++||++||..+.. +. ..+..+|.... .+..++| .|.|+.|.. ...+++.++++++.
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~--~~---~~~~~~w~~~~-~~~~~~~-~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~-- 92 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNA--DR---NRWHSAWRQAN-SNNPQIE-TRTGRALKATADLLEDATQPGRVALELRSVP-- 92 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHH--CC---TTHHHHHHHHT-TTCTTSC-CSHHHHHHHHHHHHHHHTSTTCCEEEEESSC--
T ss_pred cccCchHHHHHHHHHHhccC--Cc---hhhhhhhcccc-ccccccc-ccCCcchhhhHHHHhcccccceeEEEccCCC--
Confidence 34677899999999999865 32 45678884211 1256677 899999952 34678889998877
Q ss_pred cccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEcc
Q 022897 77 NYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILY 156 (290)
Q Consensus 77 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 156 (290)
+..++ ..+..+++|++|++++|.+. .+|. .+..+++|++|++++|.+. .+|..+..+++|++|+++
T Consensus 93 -------l~~lp-~~l~~l~~L~~L~L~~n~l~-~lp~----~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 93 -------LPQFP-DQAFRLSHLQHMTIDAAGLM-ELPD----TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp -------CSSCC-SCGGGGTTCSEEEEESSCCC-CCCS----CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred -------chhcC-hhhhhCCCCCEEECCCCCcc-chhH----HHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 22333 34666999999999999998 4554 7888999999999999998 788899999999999999
Q ss_pred CCCCCCCcchhhc---------ccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcE
Q 022897 157 SNSIEGSGTMQGL---------ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKT 226 (290)
Q Consensus 157 ~n~~~~~~~~~~~---------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~ 226 (290)
+|.+.+..+. .+ ..+++|++|++++|.+ . .+|. .+..+++|++|++++|.++ .+..+..+++|++
T Consensus 159 ~n~~~~~~p~-~~~~~~~~~~~~~l~~L~~L~L~~n~l--~-~lp~-~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 159 ACPELTELPE-PLASTDASGEHQGLVNLQSLRLEWTGI--R-SLPA-SIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233 (328)
T ss_dssp EETTCCCCCS-CSEEEC-CCCEEESTTCCEEEEEEECC--C-CCCG-GGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCE
T ss_pred CCCCccccCh-hHhhccchhhhccCCCCCEEECcCCCc--C-cchH-hhcCCCCCCEEEccCCCCCcCchhhccCCCCCE
Confidence 9988876654 33 3589999999999986 3 6776 7899999999999999998 7778899999999
Q ss_pred EEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 227 LDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 227 L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
|++++|.+.+ +..+..+++|++|++++|.+.+.+|.. +..+++|++|+|++|++.+.+|+.|
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEeCCCCCchhhccHHH
Confidence 9999999887 677899999999999999999899988 8999999999999999999998765
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=5.4e-32 Score=250.86 Aligned_cols=259 Identities=17% Similarity=0.179 Sum_probs=164.2
Q ss_pred cccHHHHHHHHHHhhhhhccCCCCCC---CCCCCCCcCCCCCCCCCCCCCC---CceEeccccCcEEeeccccccccccc
Q 022897 6 GCLETERTALLEIKSFFISVGDIGYD---DKILPSWVGEDDGMPSDCCDDW---EGVKCNATTRRVMQLSLTYTERLNYY 79 (290)
Q Consensus 6 ~~~~~~~~al~~~~~~~~~~~~~~~~---~~~~~~W~~~~~~~~~~~c~~w---~gv~c~~~~~~v~~l~l~~~~~l~~l 79 (290)
+....|++||.+|+.++.+.. +.+. .....+|.. ..++| .| .||.|+. .++|+.++|+++. +
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~-w~~~~~~~~~~~~W~~-----~~~~c-~w~~~~GV~C~~-~~~V~~L~L~~~~----l 93 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKN-WSQQGFGTQPGANWNF-----NKELD-MWGAQPGVSLNS-NGRVTGLSLEGFG----A 93 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGG-CCCCC------CCCCC-----SSCGG-GTTCCTTEEECT-TCCEEEEECTTSC----C
T ss_pred hhHHHHHHHHHHHHHHcCCCC-cccCCcCCccCCCCCC-----CCCcc-cccCCCCeEEcC-CCCEEEEEecCcc----c
Confidence 345579999999999998721 1111 112348986 67888 99 9999986 4899999999887 2
Q ss_pred ccccccccCCCcCCCCCCCcEEECCCCcc------cC-------------------------------------------
Q 022897 80 DRTSASLLNMSLFHPFEELQSLNLSDNWF------RG------------------------------------------- 110 (290)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l------~~------------------------------------------- 110 (290)
.+.+ +..++++++|+.|++++|.+ .+
T Consensus 94 ----~g~l-p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~ 168 (636)
T 4eco_A 94 ----SGRV-PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINS 168 (636)
T ss_dssp ----EEEE-CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHH
T ss_pred ----CCcC-ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhc
Confidence 1122 34567777777777777743 11
Q ss_pred -------------------------ccchhhhhhcCCCCCCcEEECCCCcCCCC-----------------chhhcc--C
Q 022897 111 -------------------------FYENKAYDSFGSLKQLKILDLGCNFFNDS-----------------ILPYLN--T 146 (290)
Q Consensus 111 -------------------------~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-----------------~~~~l~--~ 146 (290)
... .++..++++++|++|++++|.+++. +|..++ +
T Consensus 169 ~l~~~~~~~~~~~~l~~l~l~~~~n~l~-~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~ 247 (636)
T 4eco_A 169 DPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN 247 (636)
T ss_dssp CTTSCCCCCCCCCCCCTTTTTCCSCEEE-EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG
T ss_pred CccccccccccccchhhhhhccccCCCc-cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc
Confidence 000 0223566777777777777777764 677777 7
Q ss_pred CCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCC-CCCCC-ccchhhhccC------CCccEEEcCCCCCC-CCc-
Q 022897 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNE-NITSG-SLTRLGLANL------TNLKELDLRGCGIT-TSQ- 216 (290)
Q Consensus 147 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~-~~~~~~~~~~------~~L~~L~l~~n~l~-~~~- 216 (290)
+++|++|++++|.+.+.++ ..+..+++|++|++++|. + .+ .+|. .+..+ ++|++|++++|.++ +|.
T Consensus 248 l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l--~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~ 323 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGI--SGEQLKD-DWQALADAPVGEKIQIIYIGYNNLKTFPVE 323 (636)
T ss_dssp CTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTS--CHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred cCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCC--ccccchH-HHHhhhccccCCCCCEEECCCCcCCccCch
Confidence 7777777777777776655 467777777777777776 5 44 4555 45444 67777777777766 555
Q ss_pred -CCCCCCCCcEEEccCCCCCC-ccccc-----------------------cCCC-CCEEeCCCCCCCCcccccccCCCC-
Q 022897 217 -GLADLPNLKTLDLRDCGITT-IQGLA-----------------------KLKN-LEALDLSWNNINGSLESQGLADLP- 269 (290)
Q Consensus 217 -~~~~l~~L~~L~l~~n~l~~-~~~l~-----------------------~~~~-L~~L~l~~n~l~~~i~~~~l~~l~- 269 (290)
.+..+++|++|++++|.+++ .+.+. .+++ |++|++++|.++ .+|.. +..++
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~-~~~~~l 401 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI-FDAKSV 401 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSC-CCTTCS
T ss_pred hhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchh-hhhccc
Confidence 56667777777777776663 22444 4444 555555555555 45543 33332
Q ss_pred -CCCEEecCCCCCccccccc
Q 022897 270 -NLKILDLRDCGMTTIQGKI 288 (290)
Q Consensus 270 -~L~~L~L~~n~l~~~~~~~ 288 (290)
+|++|++++|++++.+|..
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCS
T ss_pred CccCEEECcCCcCCCcchhh
Confidence 5556666666665555543
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=2.1e-31 Score=252.35 Aligned_cols=250 Identities=18% Similarity=0.186 Sum_probs=145.6
Q ss_pred ccccHHHHHHHHHHhhhhhccCCCCCCCCCCCCCcCCCCCCCCCC--CCCC------------CceEeccccCcEEeecc
Q 022897 5 KGCLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDC--CDDW------------EGVKCNATTRRVMQLSL 70 (290)
Q Consensus 5 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--c~~w------------~gv~c~~~~~~v~~l~l 70 (290)
+++..+|++||++||+++.+ + +|.....+...++ | .| .||.|+. .++|+.++|
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~--~---------~W~~~~~~~~~~~~~C-~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~L 330 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDG--K---------NWRYYSGTINNTIHSL-NWNFNKELDMWGDQPGVDLDN-NGRVTGLSL 330 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTG--G---------GCCCCCSSCSSCCCCC-SCCCSSCGGGTTCCTTEEECT-TSCEEEEEC
T ss_pred cccchHHHHHHHHHHHHcCC--C---------CCCcCCCcccccCCcc-ccccccccccccCcCceEecC-CCCEEEEEC
Confidence 45677899999999999976 2 5654211111233 7 99 9999986 689999999
Q ss_pred cccccccccccccccccCCCcCCCCCCCcEEEC-CCCcccCccchh----------------------------------
Q 022897 71 TYTERLNYYDRTSASLLNMSLFHPFEELQSLNL-SDNWFRGFYENK---------------------------------- 115 (290)
Q Consensus 71 ~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l-~~n~l~~~~~~~---------------------------------- 115 (290)
+++. + .+.+ +..++++++|+.|+| ++|.+.|..+-.
T Consensus 331 s~~~----L----~G~i-p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 331 AGFG----A----KGRV-PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp TTTC----C----EEEE-CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred ccCC----C----CCcC-chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 9887 1 0112 244566666666666 555443320000
Q ss_pred --------------------------------------hhhhcCCCCCCcEEECCCCcCCC-----------------Cc
Q 022897 116 --------------------------------------AYDSFGSLKQLKILDLGCNFFND-----------------SI 140 (290)
Q Consensus 116 --------------------------------------~~~~l~~l~~L~~L~l~~n~l~~-----------------~~ 140 (290)
++..|+++++|++|+|++|.+++ .+
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 22245566666666666666665 25
Q ss_pred hhhcc--CCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCC-CCCCC-ccchhhhccC-------CCccEEEcCC
Q 022897 141 LPYLN--TLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNE-NITSG-SLTRLGLANL-------TNLKELDLRG 209 (290)
Q Consensus 141 ~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~-~~~~~~~~~~-------~~L~~L~l~~ 209 (290)
|..++ ++++|++|++++|.+.+.++ ..+..+++|++|++++|. + .+ .+|. .+..+ ++|++|++++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~l--sg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGI--SAAQLKA-DWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTS--CHHHHHH-HHHHHHHCTTTTTTCCEEECCS
T ss_pred ChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCc--ccccchH-HHHhhhhcccccCCccEEEeeC
Confidence 55555 66666666666666665544 356666666666666665 4 33 3443 33332 2566666666
Q ss_pred CCCC-CCc--CCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCC-CCEEecCCCCCc
Q 022897 210 CGIT-TSQ--GLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPN-LKILDLRDCGMT 282 (290)
Q Consensus 210 n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~-L~~L~L~~n~l~ 282 (290)
|.++ +|. .+..+++|++|++++|.++..+.+..+++|+.|++++|.++ .+|.. +..+++ |++|+|++|+++
T Consensus 558 N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 558 NNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPED-FCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp SCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTT-SCEECTTCCEEECCSSCCC
T ss_pred CcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHH-HhhccccCCEEECcCCCCC
Confidence 6555 444 45555556666666555555335555555555555555555 45544 444554 555555555555
No 6
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=6.2e-27 Score=208.03 Aligned_cols=237 Identities=23% Similarity=0.323 Sum_probs=188.0
Q ss_pred CCCCC-CC-CCCceEeccccCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCC
Q 022897 45 MPSDC-CD-DWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGS 122 (290)
Q Consensus 45 ~~~~~-c~-~w~gv~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~ 122 (290)
|+..| |. .|..|.|........+-.+........+....+..+.+..+..+++|++|+|++|.+....+. .|..
T Consensus 35 Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~ 110 (440)
T 3zyj_A 35 CPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG----AFNG 110 (440)
T ss_dssp CCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGG----GGTT
T ss_pred CCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChh----hccC
Confidence 66666 52 367899964322222222222111122333345566667789999999999999999887766 8899
Q ss_pred CCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCc
Q 022897 123 LKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNL 202 (290)
Q Consensus 123 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 202 (290)
+++|++|+|++|.++...+..|..+++|++|++++|.++. ++...+..+++|++|++++|.. .+.++...+..+++|
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~--l~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKR--LSYISEGAFEGLSNL 187 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTT--CCEECTTTTTTCSSC
T ss_pred CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCC--cceeCcchhhccccc
Confidence 9999999999999997777789999999999999999985 3445788999999999999765 566776678899999
Q ss_pred cEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCC
Q 022897 203 KELDLRGCGITTSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCG 280 (290)
Q Consensus 203 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~ 280 (290)
++|++++|.++..+.+..+++|++|++++|.+++ +..+..+++|+.|++++|.+++ ++...+..+++|++|+|++|+
T Consensus 188 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 188 RYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp CEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTSSTTCTTCCEEECTTSC
T ss_pred CeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE-EChhhhcCCCCCCEEECCCCC
Confidence 9999999999955568899999999999999998 5678899999999999999984 544448899999999999999
Q ss_pred CcccccccC
Q 022897 281 MTTIQGKIF 289 (290)
Q Consensus 281 l~~~~~~~f 289 (290)
+++++++.|
T Consensus 267 l~~~~~~~~ 275 (440)
T 3zyj_A 267 LTLLPHDLF 275 (440)
T ss_dssp CCCCCTTTT
T ss_pred CCccChhHh
Confidence 999988776
No 7
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.2e-27 Score=202.57 Aligned_cols=227 Identities=23% Similarity=0.295 Sum_probs=142.4
Q ss_pred CCCCCCCCCCceEecccc---------CcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCcc--c
Q 022897 45 MPSDCCDDWEGVKCNATT---------RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFY--E 113 (290)
Q Consensus 45 ~~~~~c~~w~gv~c~~~~---------~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~ 113 (290)
|+..|.+.|.++.|.... ..++.++++++. +..++...+..+++|++|++++|.+.... +
T Consensus 1 CP~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~---------l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 71 (306)
T 2z66_A 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNK---------LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71 (306)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSC---------CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEE
T ss_pred CcCCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCc---------cCccCHhHhhccccCCEEECCCCccCcccCcc
Confidence 455662399999997532 134444554443 44555666888999999999999887442 2
Q ss_pred hhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccch
Q 022897 114 NKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTR 193 (290)
Q Consensus 114 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 193 (290)
. .+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++......+..+++|++|++++|.+ .+..+.
T Consensus 72 ~----~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~ 144 (306)
T 2z66_A 72 Q----SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT--RVAFNG 144 (306)
T ss_dssp H----HHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC--EECSTT
T ss_pred c----ccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC--Cccchh
Confidence 2 4455777777777777766 35555667777777777777766543323566667777777777664 222222
Q ss_pred hhhccCCCccEEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCC
Q 022897 194 LGLANLTNLKELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADL 268 (290)
Q Consensus 194 ~~~~~~~~L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l 268 (290)
.+..+++|++|++++|.++ .+..+..+++|++|++++|.+++ +..+..+++|++|++++|.+++ ++...+..+
T Consensus 145 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l 222 (306)
T 2z66_A 145 -IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCL 222 (306)
T ss_dssp -TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTC
T ss_pred -hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhccCc
Confidence 4566666666666666664 35556666666666666666665 3455666666666666666663 333335666
Q ss_pred CCCCEEecCCCCCcccccccC
Q 022897 269 PNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 269 ~~L~~L~L~~n~l~~~~~~~f 289 (290)
++|++|+|++|++++.+|..|
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSC
T ss_pred ccCCEeECCCCCCcccCHHHH
Confidence 666666666666666655443
No 8
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=7.1e-27 Score=208.33 Aligned_cols=229 Identities=22% Similarity=0.297 Sum_probs=189.2
Q ss_pred CCCCC-CC-CCCceEeccccC---------cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccc
Q 022897 45 MPSDC-CD-DWEGVKCNATTR---------RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYE 113 (290)
Q Consensus 45 ~~~~~-c~-~w~gv~c~~~~~---------~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 113 (290)
|+..| |. .|..|.|..... .++.++++++. +..+.+..|..+++|++|++++|.+.+..+
T Consensus 46 Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~---------i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 116 (452)
T 3zyi_A 46 CPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENN---------IQMIQADTFRHLHHLEVLQLGRNSIRQIEV 116 (452)
T ss_dssp CCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSC---------CCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCc---------CceECHHHcCCCCCCCEEECCCCccCCcCh
Confidence 66666 41 357899964321 33444444433 455666778999999999999999998877
Q ss_pred hhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccch
Q 022897 114 NKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTR 193 (290)
Q Consensus 114 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 193 (290)
. .|..+++|++|+|++|.++...+..|..+++|++|++++|.++. ++...+..+++|++|++++|.. .+.++.
T Consensus 117 ~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~--l~~i~~ 189 (452)
T 3zyi_A 117 G----AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKK--LEYISE 189 (452)
T ss_dssp T----TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTT--CCEECT
T ss_pred h----hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCCCCC--ccccCh
Confidence 6 88999999999999999997777778999999999999999985 4445788999999999999765 667776
Q ss_pred hhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCC
Q 022897 194 LGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNL 271 (290)
Q Consensus 194 ~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L 271 (290)
..+..+++|++|++++|.++..+.+..+++|++|++++|.+++ +..+..+++|+.|++++|.+++..+. .+..+++|
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L 268 (452)
T 3zyi_A 190 GAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN-AFDGLASL 268 (452)
T ss_dssp TTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT-TTTTCTTC
T ss_pred hhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH-HhcCCCCC
Confidence 6788999999999999999955678899999999999999998 66789999999999999999854444 48999999
Q ss_pred CEEecCCCCCcccccccCC
Q 022897 272 KILDLRDCGMTTIQGKIFK 290 (290)
Q Consensus 272 ~~L~L~~n~l~~~~~~~f~ 290 (290)
++|+|++|++++.+++.|.
T Consensus 269 ~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp CEEECCSSCCSCCCTTSST
T ss_pred CEEECCCCcCCccChHHhc
Confidence 9999999999999887763
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3e-26 Score=192.15 Aligned_cols=195 Identities=26% Similarity=0.237 Sum_probs=166.6
Q ss_pred cccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCc-CCCCchhhccCCCCCCEEEccCCCCC
Q 022897 83 SASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNF-FNDSILPYLNTLTSLTTLILYSNSIE 161 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~ 161 (290)
.+..+.+..+..+++|++|++++|.+.+..+. .|..+++|++|++++|. +....+..+..+++|++|++++|.++
T Consensus 43 ~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~ 118 (285)
T 1ozn_A 43 RISHVPAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred cCCccCHHHcccCCCCCEEECCCCccceeCHh----hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC
Confidence 34555666788999999999999999887666 78999999999999997 77666888999999999999999998
Q ss_pred CCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--c
Q 022897 162 GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--I 237 (290)
Q Consensus 162 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~ 237 (290)
+.. +..+..+++|++|++++|.+ ..++...+..+++|++|++++|.++ .+..+..+++|++|++++|.+++ +
T Consensus 119 ~~~-~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 194 (285)
T 1ozn_A 119 ELG-PGLFRGLAALQYLYLQDNAL---QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194 (285)
T ss_dssp CCC-TTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred EEC-HhHhhCCcCCCEEECCCCcc---cccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH
Confidence 653 45788999999999999996 3455446889999999999999998 34468899999999999999998 6
Q ss_pred cccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897 238 QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG 286 (290)
Q Consensus 238 ~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~ 286 (290)
..+..+++|+.|++++|.+++ ++...+..+++|++|++++|++....+
T Consensus 195 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 195 HAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred hHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCccCCCC
Confidence 778999999999999999995 554448999999999999999876443
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=6.6e-26 Score=188.59 Aligned_cols=215 Identities=21% Similarity=0.268 Sum_probs=176.1
Q ss_pred CCCCCCCceEeccccCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCc
Q 022897 48 DCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLK 127 (290)
Q Consensus 48 ~~c~~w~gv~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~ 127 (290)
++| .|.|+.|.. ...++.+++++.. +..++.. + .+++++|++++|.+....+. .|..+++|+
T Consensus 3 ~~C-~~~~~~C~c-~~~~~~l~~~~~~---------l~~ip~~-~--~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~ 64 (270)
T 2o6q_A 3 ALC-KKDGGVCSC-NNNKNSVDCSSKK---------LTAIPSN-I--PADTKKLDLQSNKLSSLPSK----AFHRLTKLR 64 (270)
T ss_dssp CCB-GGGTCSBEE-ETTTTEEECTTSC---------CSSCCSC-C--CTTCSEEECCSSCCSCCCTT----SSSSCTTCC
T ss_pred ccC-CCCCCCCEe-CCCCCEEEccCCC---------CCccCCC-C--CCCCCEEECcCCCCCeeCHH----HhcCCCCCC
Confidence 578 899999864 2345567777765 2222222 1 25799999999999987766 789999999
Q ss_pred EEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEc
Q 022897 128 ILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL 207 (290)
Q Consensus 128 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l 207 (290)
+|++++|.++...+..|..+++|++|++++|.+++. ++..+..+++|++|++++|.+ . .++...+..+++|++|++
T Consensus 65 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l--~-~~~~~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 65 LLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAELRLDRNQL--K-SLPPRVFDSLTKLTYLSL 140 (270)
T ss_dssp EEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCEEECCSSCC--C-CCCTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCCEEECCCCcc--C-eeCHHHhCcCcCCCEEEC
Confidence 999999999876666778899999999999999864 445788999999999999996 3 345446889999999999
Q ss_pred CCCCCC-C-CcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcc
Q 022897 208 RGCGIT-T-SQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTT 283 (290)
Q Consensus 208 ~~n~l~-~-~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~ 283 (290)
++|.++ . +..+..+++|++|++++|.+++ +..+..+++|++|++++|.++ .+|...+..+++|+.|+|++|++..
T Consensus 141 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCeeC
Confidence 999998 3 3457899999999999999998 345888999999999999999 5666658899999999999999876
Q ss_pred cc
Q 022897 284 IQ 285 (290)
Q Consensus 284 ~~ 285 (290)
..
T Consensus 220 ~c 221 (270)
T 2o6q_A 220 TC 221 (270)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=4.9e-26 Score=215.29 Aligned_cols=188 Identities=23% Similarity=0.306 Sum_probs=115.7
Q ss_pred CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897 92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN 171 (290)
Q Consensus 92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 171 (290)
+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+++.+|..++.+++|++|++++|.+++..+ ..+..
T Consensus 462 ~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~ 536 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTGEIPS----GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP-AELGD 536 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC-GGGGG
T ss_pred HcCCCCceEEEecCCcccCcCCH----HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC-HHHcC
Confidence 44445555555555555554444 45555566666666666655555555556666666666666554433 35556
Q ss_pred CCCCCeeeCCCCCCCCCCccchh---------------------------------------------------------
Q 022897 172 LRYLQVLDLSWNENITSGSLTRL--------------------------------------------------------- 194 (290)
Q Consensus 172 l~~L~~L~l~~n~~~~~~~~~~~--------------------------------------------------------- 194 (290)
+++|++|++++|.+ .+.+|..
T Consensus 537 l~~L~~L~Ls~N~l--~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 537 CRSLIWLDLNTNLF--NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp CTTCCEEECCSSEE--ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred CCCCCEEECCCCcc--CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence 66666666666655 3333321
Q ss_pred ------------hhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCC
Q 022897 195 ------------GLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNING 258 (290)
Q Consensus 195 ------------~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~ 258 (290)
.+..+++|++|++++|+++ +|..+..+++|+.|++++|.+++ |..++.+++|+.|||++|.++|
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence 1222355666777777666 56666777777777777777776 6667777777777777777777
Q ss_pred cccccccCCCCCCCEEecCCCCCcccccc
Q 022897 259 SLESQGLADLPNLKILDLRDCGMTTIQGK 287 (290)
Q Consensus 259 ~i~~~~l~~l~~L~~L~L~~n~l~~~~~~ 287 (290)
.+|.. +..+++|++|+|++|+++|.+|+
T Consensus 695 ~ip~~-l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 695 RIPQA-MSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCCGG-GGGCCCCSEEECCSSEEEEECCS
T ss_pred cCChH-HhCCCCCCEEECcCCcccccCCC
Confidence 77766 67777777777777777777765
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.1e-26 Score=197.78 Aligned_cols=223 Identities=25% Similarity=0.334 Sum_probs=161.6
Q ss_pred CCCCCCCCCceEeccccC-----------cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccch
Q 022897 46 PSDCCDDWEGVKCNATTR-----------RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYEN 114 (290)
Q Consensus 46 ~~~~c~~w~gv~c~~~~~-----------~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 114 (290)
....| .|.++ |+.... .++.++++++. +..++...+..+++|++|++++|.+++..+.
T Consensus 26 ~~~~C-~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~---------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (353)
T 2z80_A 26 ASLSC-DRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNR---------ITYISNSDLQRCVNLQALVLTSNGINTIEED 94 (353)
T ss_dssp -CCEE-CTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSC---------CCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred cCCCC-CCCeE-eeCCCCCcccccccccccCcEEECCCCc---------CcccCHHHhccCCCCCEEECCCCccCccCHh
Confidence 34456 89987 653222 34444444443 4455556788999999999999999887766
Q ss_pred hhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchh
Q 022897 115 KAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRL 194 (290)
Q Consensus 115 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 194 (290)
.|..+++|++|++++|.+++..+..+..+++|++|++++|.++.......+..+++|++|++++|.. .+.++..
T Consensus 95 ----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~--~~~~~~~ 168 (353)
T 2z80_A 95 ----SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT--FTKIQRK 168 (353)
T ss_dssp ----TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS--CCEECTT
T ss_pred ----hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcc--ccccCHH
Confidence 7889999999999999998766666889999999999999988532214688899999999999854 4455554
Q ss_pred hhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC-cc---------------------------------
Q 022897 195 GLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT-IQ--------------------------------- 238 (290)
Q Consensus 195 ~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~-~~--------------------------------- 238 (290)
.+..+++|++|++++|.++ .+..+..+++|++|++++|.++. +.
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~ 248 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CC
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccccccc
Confidence 7888899999999999887 56777777777777776666554 11
Q ss_pred -----------------------ccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897 239 -----------------------GLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG 286 (290)
Q Consensus 239 -----------------------~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~ 286 (290)
.+..+++|+.|++++|.++ .+|...+..+++|++|+|++|++++..|
T Consensus 249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 1334556777777777766 5666545667777777777777766554
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=5.5e-25 Score=196.12 Aligned_cols=93 Identities=29% Similarity=0.394 Sum_probs=55.1
Q ss_pred CCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhh--ccCCCCCCEEEccCCCCCCCcch
Q 022897 89 MSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY--LNTLTSLTTLILYSNSIEGSGTM 166 (290)
Q Consensus 89 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~ 166 (290)
+..+..+++|++|++++|.+.+..+. .|..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+.
T Consensus 72 ~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 147 (455)
T 3v47_A 72 NNTFRGLSSLIILKLDYNQFLQLETG----AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147 (455)
T ss_dssp TTTTTTCTTCCEEECTTCTTCEECTT----TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC
T ss_pred cccccccccCCEEeCCCCccCccChh----hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc
Confidence 44566667777777777776665554 5566666666666666665544433 55566666666666666554333
Q ss_pred hhcccCCCCCeeeCCCCCC
Q 022897 167 QGLANLRYLQVLDLSWNEN 185 (290)
Q Consensus 167 ~~~~~l~~L~~L~l~~n~~ 185 (290)
..+..+++|++|++++|.+
T Consensus 148 ~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 148 SFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp GGGGGCTTCCEEECTTCCB
T ss_pred cccCCCCcccEEeCCCCcc
Confidence 2355555666666655554
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.3e-25 Score=205.20 Aligned_cols=192 Identities=20% Similarity=0.229 Sum_probs=104.6
Q ss_pred ccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC
Q 022897 84 ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 163 (290)
+..++...+..+++|++|++++|.+.+..+. .|..+++|++|+|++|.+++..|..|+.+++|++|++++|.+++
T Consensus 63 l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~- 137 (597)
T 3oja_B 63 MRKLPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS- 137 (597)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred CCCcCHHHHccCCCCcEEECCCCCCCCCChH----HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-
Confidence 4444555556666677777777666665554 56666666666666666666555566666666666666666653
Q ss_pred cchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CC-cCCC----------------------
Q 022897 164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TS-QGLA---------------------- 219 (290)
Q Consensus 164 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~-~~~~---------------------- 219 (290)
.++..+..+++|++|++++|.+ .+ +++..+..+++|++|++++|.++ .+ ..+.
T Consensus 138 l~~~~~~~l~~L~~L~Ls~N~l--~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~ 214 (597)
T 3oja_B 138 LPRGIFHNTPKLTTLSMSNNNL--ER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVE 214 (597)
T ss_dssp CCTTTTTTCTTCCEEECCSSCC--CB-CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCS
T ss_pred CCHHHhccCCCCCEEEeeCCcC--CC-CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhh
Confidence 2333456666666666666664 22 22224555666666666665554 10 0000
Q ss_pred ---------------CCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccc
Q 022897 220 ---------------DLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284 (290)
Q Consensus 220 ---------------~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~ 284 (290)
..++|+.|++++|.+++++.+..+++|+.|+|++|.+++.+|.. +..+++|++|+|++|.++++
T Consensus 215 ~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~l 293 (597)
T 3oja_B 215 ELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLVAL 293 (597)
T ss_dssp EEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGG-GTTCSSCCEEECTTSCCCEE
T ss_pred eeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHH-hcCccCCCEEECCCCCCCCC
Confidence 01234444444444444444555555555555555555333333 45555555555555555543
No 15
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=1.1e-24 Score=186.30 Aligned_cols=225 Identities=24% Similarity=0.298 Sum_probs=148.4
Q ss_pred CCCCCCCCCCceEecccc---------CcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchh
Q 022897 45 MPSDCCDDWEGVKCNATT---------RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENK 115 (290)
Q Consensus 45 ~~~~~c~~w~gv~c~~~~---------~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 115 (290)
|+..|.+.|..+.|.... ..++.++++++. +..+....+..+++|++|++++|.+.+..+.
T Consensus 25 cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~---------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 94 (330)
T 1xku_A 25 CPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNK---------ITEIKDGDFKNLKNLHTLILINNKISKISPG- 94 (330)
T ss_dssp CCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSC---------CCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-
T ss_pred CCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCc---------CCEeChhhhccCCCCCEEECCCCcCCeeCHH-
Confidence 565563389999996422 123344444433 4445555688888999999999988877666
Q ss_pred hhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhh
Q 022897 116 AYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLG 195 (290)
Q Consensus 116 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 195 (290)
.|..+++|++|++++|.++. +|..+. ++|++|++++|.+++. ++..+..+++|++|++++|.+...+..+. .
T Consensus 95 ---~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~ 166 (330)
T 1xku_A 95 ---AFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENG-A 166 (330)
T ss_dssp ---TTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTT-G
T ss_pred ---HhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChh-h
Confidence 77888888888888887763 333322 4555555555555432 22334444555555555444321111111 2
Q ss_pred hccC---------------------CCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEe
Q 022897 196 LANL---------------------TNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALD 250 (290)
Q Consensus 196 ~~~~---------------------~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~ 250 (290)
+..+ ++|++|++++|.++ .+..+..+++|++|++++|.+++ +..+..+++|++|+
T Consensus 167 ~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 246 (330)
T 1xku_A 167 FQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246 (330)
T ss_dssp GGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred ccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEE
Confidence 3333 45666666666666 35667788888888888888887 34678888899999
Q ss_pred CCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 251 LSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 251 l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
+++|.++ .+|.. +..+++|++|++++|+++++++..|
T Consensus 247 L~~N~l~-~lp~~-l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 247 LNNNKLV-KVPGG-LADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CCSSCCS-SCCTT-TTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CCCCcCc-cCChh-hccCCCcCEEECCCCcCCccChhhc
Confidence 9999888 77777 7888899999999999998887766
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=3.1e-25 Score=194.01 Aligned_cols=122 Identities=21% Similarity=0.223 Sum_probs=68.5
Q ss_pred ccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC
Q 022897 84 ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 163 (290)
+..++...+..+++|++|++++|.+.+..+. .|..+++|++|++++|.+.+..|..+..+++|++|++++|.++.
T Consensus 57 l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~- 131 (390)
T 3o6n_A 57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS- 131 (390)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred hhhCChhHhcccccCcEEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-
Confidence 3344444455566666666666666655444 55666666666666666665555556666666666666666653
Q ss_pred cchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC
Q 022897 164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT 213 (290)
Q Consensus 164 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 213 (290)
.+...+..+++|++|++++|.+ . .++...+..+++|++|++++|.++
T Consensus 132 l~~~~~~~l~~L~~L~L~~n~l--~-~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 132 LPRGIFHNTPKLTTLSMSNNNL--E-RIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSSCC--C-BCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCHHHhcCCCCCcEEECCCCcc--C-ccChhhccCCCCCCEEECCCCcCC
Confidence 2333345566666666666654 2 222224555555555555555543
No 17
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=6.6e-25 Score=187.90 Aligned_cols=225 Identities=25% Similarity=0.301 Sum_probs=164.0
Q ss_pred CCCCCCCCCCceEeccccC---------cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchh
Q 022897 45 MPSDCCDDWEGVKCNATTR---------RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENK 115 (290)
Q Consensus 45 ~~~~~c~~w~gv~c~~~~~---------~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 115 (290)
|+..|.+.|..+.|..... .++.++++++. +..+.+..+..+++|++|++++|.+++..+.
T Consensus 27 cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~---------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 96 (332)
T 2ft3_A 27 CPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNND---------ISELRKDDFKGLQHLYALVLVNNKISKIHEK- 96 (332)
T ss_dssp CCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSC---------CCEECTTTTTTCTTCCEEECCSSCCCEECGG-
T ss_pred CCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCc---------CCccCHhHhhCCCCCcEEECCCCccCccCHh-
Confidence 5555623899999964221 33444444433 4455566788899999999999999887666
Q ss_pred hhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhh
Q 022897 116 AYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLG 195 (290)
Q Consensus 116 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 195 (290)
.|..+++|++|++++|.++ .+|..+. ++|++|++++|.++.. ++..+..+++|++|++++|.+...+..+. .
T Consensus 97 ---~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~ 168 (332)
T 2ft3_A 97 ---AFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPG-A 168 (332)
T ss_dssp ---GSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTT-S
T ss_pred ---HhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCcc-CHhHhCCCccCCEEECCCCccccCCCCcc-c
Confidence 7888999999999999887 4554443 7788888888887753 33457777888888888777532111111 2
Q ss_pred hccC--------------------CCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeC
Q 022897 196 LANL--------------------TNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDL 251 (290)
Q Consensus 196 ~~~~--------------------~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l 251 (290)
+..+ ++|++|++++|.++ .+..+..+++|++|++++|.+++ +..+..+++|++|++
T Consensus 169 ~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 248 (332)
T 2ft3_A 169 FDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248 (332)
T ss_dssp SCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred ccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEEC
Confidence 2221 46777777777777 34677888899999999999888 346888899999999
Q ss_pred CCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 252 SWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 252 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
++|.++ .+|.. +..+++|++|++++|++++.++..|
T Consensus 249 ~~N~l~-~lp~~-l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 249 DNNKLS-RVPAG-LPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CSSCCC-BCCTT-GGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CCCcCe-ecChh-hhcCccCCEEECCCCCCCccChhHc
Confidence 999998 78877 7888999999999999998887765
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=4.5e-26 Score=193.58 Aligned_cols=191 Identities=20% Similarity=0.207 Sum_probs=170.6
Q ss_pred CCCcCCCCCCCcEEECCC-CcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcch
Q 022897 88 NMSLFHPFEELQSLNLSD-NWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTM 166 (290)
Q Consensus 88 ~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 166 (290)
.+..+..+++|++|++++ |.+.+.+|. .|..+++|++|++++|.+++.+|..+..+++|++|++++|.+++..+
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p- 142 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP- 142 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC-
T ss_pred cChhHhCCCCCCeeeCCCCCcccccCCh----hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC-
Confidence 356788999999999995 899888877 78999999999999999998899999999999999999999987655
Q ss_pred hhcccCCCCCeeeCCCCCCCCCCccchhhhccCC-CccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccc
Q 022897 167 QGLANLRYLQVLDLSWNENITSGSLTRLGLANLT-NLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLA 241 (290)
Q Consensus 167 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~ 241 (290)
..+..+++|++|++++|.+ .+.+|. .+..++ +|++|++++|.++ .+..+..+. |++|++++|.+++ +..+.
T Consensus 143 ~~~~~l~~L~~L~L~~N~l--~~~~p~-~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~ 218 (313)
T 1ogq_A 143 PSISSLPNLVGITFDGNRI--SGAIPD-SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG 218 (313)
T ss_dssp GGGGGCTTCCEEECCSSCC--EEECCG-GGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCC
T ss_pred hHHhcCCCCCeEECcCCcc--cCcCCH-HHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHh
Confidence 4789999999999999997 567776 788887 9999999999998 677777777 9999999999987 67789
Q ss_pred cCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 242 KLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 242 ~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
.+++|+.|++++|.+++.+|. +..+++|++|+|++|++++.+|..|
T Consensus 219 ~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 219 SDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp TTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred cCCCCCEEECCCCceeeecCc--ccccCCCCEEECcCCcccCcCChHH
Confidence 999999999999999976665 7889999999999999999888765
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=3.8e-24 Score=179.30 Aligned_cols=186 Identities=22% Similarity=0.194 Sum_probs=161.5
Q ss_pred CCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCC-CCCCcchhhcccCC
Q 022897 95 FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNS-IEGSGTMQGLANLR 173 (290)
Q Consensus 95 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~ 173 (290)
.++|++|++++|.+.+..+. .|..+++|++|++++|.+++..+..+..+++|++|++++|. +.. ..+..+..++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~-~~~~~~~~l~ 105 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS-VDPATFHGLG 105 (285)
T ss_dssp CTTCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC-CCTTTTTTCT
T ss_pred CCCceEEEeeCCcCCccCHH----HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc-cCHHHhcCCc
Confidence 46899999999999987766 78999999999999999998778899999999999999998 654 4456889999
Q ss_pred CCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEE
Q 022897 174 YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEAL 249 (290)
Q Consensus 174 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L 249 (290)
+|++|++++|.+ . .++...+..+++|++|++++|.++ .+..+..+++|++|++++|.+++ +..+..+++|++|
T Consensus 106 ~L~~L~l~~n~l--~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 182 (285)
T 1ozn_A 106 RLHTLHLDRCGL--Q-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182 (285)
T ss_dssp TCCEEECTTSCC--C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcC--C-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEE
Confidence 999999999996 3 343337889999999999999998 34458899999999999999998 3358899999999
Q ss_pred eCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 250 DLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 250 ~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
++++|.+++..|.. +..+++|++|++++|++++.+++.|
T Consensus 183 ~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 221 (285)
T 1ozn_A 183 LLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEAL 221 (285)
T ss_dssp ECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHH
T ss_pred ECCCCcccccCHhH-ccCcccccEeeCCCCcCCcCCHHHc
Confidence 99999999655655 8999999999999999999887644
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=6.8e-25 Score=196.78 Aligned_cols=227 Identities=23% Similarity=0.318 Sum_probs=141.4
Q ss_pred CCCCC-CC-CCCceEeccccC---------cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccc
Q 022897 45 MPSDC-CD-DWEGVKCNATTR---------RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYE 113 (290)
Q Consensus 45 ~~~~~-c~-~w~gv~c~~~~~---------~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 113 (290)
|+..| |. .|..|.|..... .++.++++++. +..+.+..|..+++|++|++++|.+.+..+
T Consensus 3 Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 73 (477)
T 2id5_A 3 CPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNR---------IKTLNQDEFASFPHLEELELNENIVSAVEP 73 (477)
T ss_dssp CSTTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSC---------CCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred ccCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCc---------cceECHhHccCCCCCCEEECCCCccCEeCh
Confidence 66666 52 467899964221 23444444443 444445567777788888888877777666
Q ss_pred hhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccch
Q 022897 114 NKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTR 193 (290)
Q Consensus 114 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 193 (290)
. .|..+++|++|+|++|.++...+..|..+++|++|++++|.+.+.. +..+..+++|++|++++|.+ . .+..
T Consensus 74 ~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~l~~n~l--~-~~~~ 145 (477)
T 2id5_A 74 G----AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL-DYMFQDLYNLKSLEVGDNDL--V-YISH 145 (477)
T ss_dssp T----TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEEECCTTC--C-EECT
T ss_pred h----hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC-hhHccccccCCEEECCCCcc--c-eeCh
Confidence 5 6777777777777777777555555667777777777777766432 23555666666666666654 2 2222
Q ss_pred hhhccCCCccEEEcCCCCCC--------------------------CCcCCCCCCCCcEEEccCCCCCC--ccccccCCC
Q 022897 194 LGLANLTNLKELDLRGCGIT--------------------------TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKN 245 (290)
Q Consensus 194 ~~~~~~~~L~~L~l~~n~l~--------------------------~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~ 245 (290)
..+..+++|++|++++|.++ .+..+..+++|++|++++|.+.+ ++......+
T Consensus 146 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 24445555555555555444 22344455555555555554443 333333446
Q ss_pred CCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 246 LEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 246 L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
|+.|++++|.++ .+|...+..+++|++|+|++|+++++++..|
T Consensus 226 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 226 LTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp CSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred ccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence 777777777777 5665558889999999999999999888766
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=7.9e-24 Score=188.62 Aligned_cols=199 Identities=25% Similarity=0.284 Sum_probs=128.7
Q ss_pred ccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhh-ccCCCCCCEEEccCCCCCCCc
Q 022897 86 LLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY-LNTLTSLTTLILYSNSIEGSG 164 (290)
Q Consensus 86 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~ 164 (290)
...+..++.+++|++|++++|.+.+..+.. ..+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+++..
T Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred ccChhhccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 344566778888888888888887644331 13777888888888888887766655 677888888888888776543
Q ss_pred chhhcc----------------------------------cCCCCCeeeCCCCCCCC-----------------------
Q 022897 165 TMQGLA----------------------------------NLRYLQVLDLSWNENIT----------------------- 187 (290)
Q Consensus 165 ~~~~~~----------------------------------~l~~L~~L~l~~n~~~~----------------------- 187 (290)
+. .+. .+++|++|++++|.+..
T Consensus 171 ~~-~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 171 EE-DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp TT-TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred hh-hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 21 111 12345555555443310
Q ss_pred --------------------------------------CCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEE
Q 022897 188 --------------------------------------SGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTL 227 (290)
Q Consensus 188 --------------------------------------~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L 227 (290)
.+..+ ..+..+++|++|++++|.++ .+..+..+++|++|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 328 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCccccccch-hhcccCCCCCEEECCCCcccccChhHhcCcccCCEE
Confidence 11112 24566677777777777776 45566777777777
Q ss_pred EccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 228 DLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 228 ~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
++++|.+++ +..+..+++|++|++++|.+++..|.. +..+++|++|+|++|++++++++.|
T Consensus 329 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS-FLGLPNLKELALDTNQLKSVPDGIF 391 (455)
T ss_dssp ECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh-ccccccccEEECCCCccccCCHhHh
Confidence 777777766 445666777777777777776433444 6677777777777777777666554
No 22
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=4.1e-24 Score=178.26 Aligned_cols=206 Identities=25% Similarity=0.258 Sum_probs=168.4
Q ss_pred cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhh
Q 022897 64 RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY 143 (290)
Q Consensus 64 ~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 143 (290)
.++.++++++. +..+....+..+++|++|++++|.+.+..+. .|..+++|++|++++|.+++..+..
T Consensus 29 ~l~~L~ls~n~---------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 29 STKNLDLSFNP---------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp TCCEEECTTCC---------CCEECTTTTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CccEEECCCCc---------ccccCHhHhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCccChhh
Confidence 35556666554 3444555788899999999999999887665 7889999999999999998877788
Q ss_pred ccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCC
Q 022897 144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADL 221 (290)
Q Consensus 144 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l 221 (290)
+..+++|++|++++|.+.+... ..+..+++|++|++++|.+... .++. .+..+++|++|++++|.++ .+..+..+
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~l~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 172 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSF-KLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCC-CCCG-GGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred hcCCccccEEECCCCCccccCc-hhcccCCCCCEEECcCCcccee-cCch-hhccCCCCCEEECCCCCCCcCCHHHhhhh
Confidence 9999999999999999986433 3688999999999999997221 3455 7899999999999999998 34556555
Q ss_pred CCCc----EEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897 222 PNLK----TLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG 286 (290)
Q Consensus 222 ~~L~----~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~ 286 (290)
.+|+ +|++++|.+++ ++......+|+.|++++|.++ .+|...+..+++|++|+|++|++++..|
T Consensus 173 ~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp HTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred hhccccceeeecCCCcccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccccCC
Confidence 5665 89999999998 444445568999999999999 5666658999999999999999998765
No 23
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.2e-24 Score=186.01 Aligned_cols=183 Identities=23% Similarity=0.259 Sum_probs=163.2
Q ss_pred CCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCC
Q 022897 95 FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRY 174 (290)
Q Consensus 95 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 174 (290)
...++.|++++|.+... +. .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .++ ..+..+++
T Consensus 80 ~~~l~~L~L~~n~l~~l-p~----~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp-~~l~~l~~ 151 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQF-PD----QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALP-ASIASLNR 151 (328)
T ss_dssp STTCCEEEEESSCCSSC-CS----CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCC-GGGGGCTT
T ss_pred ccceeEEEccCCCchhc-Ch----hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCc-HHHhcCcC
Confidence 46899999999999854 43 5777999999999999998 78999999999999999999998 444 57999999
Q ss_pred CCeeeCCCCCCCCCCccchhhhc---------cCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC-ccccccC
Q 022897 175 LQVLDLSWNENITSGSLTRLGLA---------NLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT-IQGLAKL 243 (290)
Q Consensus 175 L~~L~l~~n~~~~~~~~~~~~~~---------~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~ 243 (290)
|++|++++|.+ .+.+|. .+. .+++|++|++++|.++ +|..+..+++|++|++++|.+++ ++.+..+
T Consensus 152 L~~L~L~~n~~--~~~~p~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l 228 (328)
T 4fcg_A 152 LRELSIRACPE--LTELPE-PLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228 (328)
T ss_dssp CCEEEEEEETT--CCCCCS-CSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred CCEEECCCCCC--ccccCh-hHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccC
Confidence 99999999887 666775 443 4999999999999998 77889999999999999999999 6779999
Q ss_pred CCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 244 KNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 244 ~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
++|++|++++|.+.+.+|.. +..+++|++|+|++|++.+.+|..|
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~ 273 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDI 273 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBCCTTG
T ss_pred CCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhcchhh
Confidence 99999999999999888887 9999999999999999999998755
No 24
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=9.3e-24 Score=187.57 Aligned_cols=189 Identities=23% Similarity=0.254 Sum_probs=166.1
Q ss_pred ccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC
Q 022897 84 ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 163 (290)
+..+.+..|..+++|++|++++|.++...+. .|..+++|++|++++|.+....+..|..+++|++|++++|...+.
T Consensus 100 i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~ 175 (440)
T 3zyj_A 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNG----AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175 (440)
T ss_dssp CCEECGGGGTTCSSCCEEECCSSCCSSCCTT----TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred CCccChhhccCCccCCEEECCCCcCCeeCHh----HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce
Confidence 3445556788999999999999999987766 789999999999999999877777889999999999999776666
Q ss_pred cchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccc
Q 022897 164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQG 239 (290)
Q Consensus 164 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~ 239 (290)
++...+..+++|++|++++|.+ ..++ .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++ +..
T Consensus 176 i~~~~~~~l~~L~~L~L~~n~l---~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 250 (440)
T 3zyj_A 176 ISEGAFEGLSNLRYLNLAMCNL---REIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250 (440)
T ss_dssp ECTTTTTTCSSCCEEECTTSCC---SSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTS
T ss_pred eCcchhhcccccCeecCCCCcC---cccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhh
Confidence 6666789999999999999996 3455 5788999999999999998 57889999999999999999998 567
Q ss_pred cccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCc
Q 022897 240 LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMT 282 (290)
Q Consensus 240 l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~ 282 (290)
+..+++|+.|+|++|.++ .++...+..+++|+.|+|++|++.
T Consensus 251 ~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 251 FDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp STTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCcc
Confidence 899999999999999999 566666899999999999999875
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=1.5e-23 Score=186.78 Aligned_cols=190 Identities=23% Similarity=0.256 Sum_probs=166.4
Q ss_pred ccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC
Q 022897 84 ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 163 (290)
+..+.+..+..+++|++|++++|.++...+. .|..+++|++|++++|.+....+..|..+++|++|++++|...+.
T Consensus 111 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~ 186 (452)
T 3zyi_A 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSG----AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSBCCTT----TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred cCCcChhhccCcccCCEEECCCCcCCccChh----hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc
Confidence 4455667788999999999999999987766 788999999999999999876667889999999999999766666
Q ss_pred cchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccc
Q 022897 164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQG 239 (290)
Q Consensus 164 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~ 239 (290)
++...+..+++|++|++++|.+. .++ .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++ +..
T Consensus 187 i~~~~~~~l~~L~~L~L~~n~l~---~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 261 (452)
T 3zyi_A 187 ISEGAFEGLFNLKYLNLGMCNIK---DMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261 (452)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCS---SCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTT
T ss_pred cChhhccCCCCCCEEECCCCccc---ccc--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHH
Confidence 66667889999999999999963 344 5788999999999999998 57789999999999999999998 667
Q ss_pred cccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcc
Q 022897 240 LAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTT 283 (290)
Q Consensus 240 l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~ 283 (290)
+..+++|+.|+|++|.++ .+|...+..+++|++|+|++|++.-
T Consensus 262 ~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 262 FDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred hcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCcCC
Confidence 899999999999999999 5666668999999999999998753
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=3.4e-23 Score=185.69 Aligned_cols=190 Identities=24% Similarity=0.305 Sum_probs=130.7
Q ss_pred cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897 91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA 170 (290)
Q Consensus 91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 170 (290)
.+..+++|++|++++|.+.+..+. .|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++. +...+.
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~ 173 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDY----MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PTEALS 173 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-CHHHHT
T ss_pred cccCCCCCCEEECCCCccccCChh----HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc-ChhHhc
Confidence 344445555555555554444333 445555555555555555544444555555566666666555542 333456
Q ss_pred cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCCc--cccccCCCC
Q 022897 171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITTI--QGLAKLKNL 246 (290)
Q Consensus 171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L 246 (290)
.+++|+.|++.+|.+ ..++...+..+++|++|++++|... .+.......+|++|++++|.++.. ..+..+++|
T Consensus 174 ~l~~L~~L~l~~n~i---~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 174 HLHGLIVLRLRHLNI---NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp TCTTCCEEEEESCCC---CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred ccCCCcEEeCCCCcC---cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 666666666666664 2233336778888999999988765 555566667999999999999983 468899999
Q ss_pred CEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 247 EALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 247 ~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
+.|+|++|.++ .++...+..+++|++|+|++|+++++.|..|
T Consensus 251 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 251 RFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp CEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred CeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHh
Confidence 99999999998 5665558999999999999999999988776
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=3e-23 Score=191.37 Aligned_cols=191 Identities=23% Similarity=0.277 Sum_probs=119.7
Q ss_pred CcCCCCCCCcEEECCCCcccCcc--chhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchh
Q 022897 90 SLFHPFEELQSLNLSDNWFRGFY--ENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQ 167 (290)
Q Consensus 90 ~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 167 (290)
..+..+++|++|++++|.+.+.. +. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNL----QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTT----TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred hhhhccCcCCEEECCCCccccccCcch----hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 34556666666666666665543 22 4566666666666666666555666666667777777766666544443
Q ss_pred hcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-----CCcCCCCCCCCcEEEccCCCCCC--cccc
Q 022897 168 GLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-----TSQGLADLPNLKTLDLRDCGITT--IQGL 240 (290)
Q Consensus 168 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~l~~L~~L~l~~n~l~~--~~~l 240 (290)
.+..+++|++|++++|.+ .+..+. .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++ +..+
T Consensus 420 ~~~~l~~L~~L~l~~n~l--~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 496 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLL--DISSEQ-LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496 (606)
T ss_dssp TTTTCTTCCEEECTTCCC--BTTCTT-TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred hhhCcccCCEEECCCCcc--CCcCHH-HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence 466666777777776665 333333 5666667777777777665 12345666677777777777666 4456
Q ss_pred ccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 241 AKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 241 ~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
..+++|++|++++|.+++..|.. +..+++| +|++++|++++.+|+.|
T Consensus 497 ~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L-~L~L~~N~l~~~~~~~~ 543 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNRLTSSSIEA-LSHLKGI-YLNLASNHISIILPSLL 543 (606)
T ss_dssp TTCTTCCEEECCSSCCCGGGGGG-GTTCCSC-EEECCSSCCCCCCGGGH
T ss_pred ccccCCCEEECCCCccCcCChhH-hCccccc-EEECcCCcccccCHhhc
Confidence 66777777777777776544444 6667777 77777777777666543
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.7e-22 Score=176.56 Aligned_cols=97 Identities=23% Similarity=0.166 Sum_probs=77.4
Q ss_pred ccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC
Q 022897 84 ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 163 (290)
+..+++..+..+++|++|++++|.+.+..+. .|..+++|++|++++|.+....+..+..+++|++|++++|.+++.
T Consensus 81 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 156 (390)
T 3o6n_A 81 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156 (390)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred ccccChhhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc
Confidence 3445556788899999999999999887776 778889999999999988855555567889999999999988764
Q ss_pred cchhhcccCCCCCeeeCCCCCC
Q 022897 164 GTMQGLANLRYLQVLDLSWNEN 185 (290)
Q Consensus 164 ~~~~~~~~l~~L~~L~l~~n~~ 185 (290)
++..+..+++|++|++++|.+
T Consensus 157 -~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 157 -EDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp -CTTTTSSCTTCCEEECCSSCC
T ss_pred -ChhhccCCCCCCEEECCCCcC
Confidence 334677888888888888876
No 29
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=1.6e-23 Score=170.94 Aligned_cols=182 Identities=16% Similarity=0.219 Sum_probs=91.8
Q ss_pred CCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCc-CCCCchhhccCCCCCCEEEccC-CCCCCCcchhhcccCCC
Q 022897 97 ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNF-FNDSILPYLNTLTSLTTLILYS-NSIEGSGTMQGLANLRY 174 (290)
Q Consensus 97 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~ 174 (290)
+|++|++++|.+++..+. .|..+++|++|++++|. ++...+..|..+++|++|++++ |.++. +++..+..+++
T Consensus 32 ~l~~L~l~~n~l~~i~~~----~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~~~f~~l~~ 106 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSH----AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-IDPDALKELPL 106 (239)
T ss_dssp TCCEEEEESCCCSEECTT----TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-ECTTSEECCTT
T ss_pred cccEEEEeCCcceEECHH----HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cCHHHhCCCCC
Confidence 455555555555554443 45555555555555554 4433333455555555555555 55543 22234555555
Q ss_pred CCeeeCCCCCCCCCCccchhhhccCCCcc---EEEcCCC-CCC--CCcCCCCCCCCc-EEEccCCCCCC-ccccccCCCC
Q 022897 175 LQVLDLSWNENITSGSLTRLGLANLTNLK---ELDLRGC-GIT--TSQGLADLPNLK-TLDLRDCGITT-IQGLAKLKNL 246 (290)
Q Consensus 175 L~~L~l~~n~~~~~~~~~~~~~~~~~~L~---~L~l~~n-~l~--~~~~~~~l~~L~-~L~l~~n~l~~-~~~l~~~~~L 246 (290)
|++|++++|.+ . .+|. +..+++|+ +|++++| .++ .+..+..+++|+ +|++++|.++. +......++|
T Consensus 107 L~~L~l~~n~l--~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L 181 (239)
T 2xwt_C 107 LKFLGIFNTGL--K-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKL 181 (239)
T ss_dssp CCEEEEEEECC--C-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEE
T ss_pred CCEEeCCCCCC--c-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCC
Confidence 55555555554 1 2332 44444444 5555555 554 223355555555 55555555554 2222122455
Q ss_pred CEEeCCCCC-CCCcccccccCCC-CCCCEEecCCCCCcccccccC
Q 022897 247 EALDLSWNN-INGSLESQGLADL-PNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 247 ~~L~l~~n~-l~~~i~~~~l~~l-~~L~~L~L~~n~l~~~~~~~f 289 (290)
+.|++++|. ++ .++...+..+ ++|++|++++|+++++++..|
T Consensus 182 ~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~ 225 (239)
T 2xwt_C 182 DAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225 (239)
T ss_dssp EEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCTTC
T ss_pred CEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChhHh
Confidence 555555553 54 4444335555 555555555555555554433
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=3.6e-23 Score=190.79 Aligned_cols=119 Identities=19% Similarity=0.176 Sum_probs=64.3
Q ss_pred CCceEecccc---------CcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCC
Q 022897 53 WEGVKCNATT---------RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSL 123 (290)
Q Consensus 53 w~gv~c~~~~---------~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l 123 (290)
+..+.|.... ..++.++++++. +..+.+..+..+++|++|++++|.+.+..+. .|..+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~---------i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l 80 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNV---------LPTIQNTTFSRLINLTFLDLTRCQIYWIHED----TFQSQ 80 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCC---------CSEECTTTSTTCTTCSEEECTTCCCCEECTT----TTTTC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCc---------cCcCChhHhccCccceEEECCCCccceeChh----hccCc
Confidence 5567775321 245556666554 3334444566666666666666666655444 55566
Q ss_pred CCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCC
Q 022897 124 KQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNEN 185 (290)
Q Consensus 124 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 185 (290)
++|++|++++|.+++..|..|..+++|++|++++|.+++.. +..+..+++|++|++++|.+
T Consensus 81 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~L~~n~l 141 (606)
T 3t6q_A 81 HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHI 141 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG-GSCCTTCTTCCEEECCSSCC
T ss_pred cccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC-cchhccCCcccEEECCCCcc
Confidence 66666666666655555555555555555555555555421 12344444455555544443
No 31
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=1e-23 Score=179.05 Aligned_cols=182 Identities=24% Similarity=0.247 Sum_probs=129.1
Q ss_pred CCCCCCcEEECCCCcccCccchhhhhhcCCC-----CCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcc-h
Q 022897 93 HPFEELQSLNLSDNWFRGFYENKAYDSFGSL-----KQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGT-M 166 (290)
Q Consensus 93 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~ 166 (290)
..+++|++|++++|.+++. +. .+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+... +
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~----~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DA----WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SS----HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred hcCCCccEEEccCCCCcch-hH----HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 6778888888888888776 43 33333 788888888888877777778888888888888888765321 1
Q ss_pred hhc--ccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCC-C--cCCCCCCCCcEEEccCCCCCC-cccc
Q 022897 167 QGL--ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITT-S--QGLADLPNLKTLDLRDCGITT-IQGL 240 (290)
Q Consensus 167 ~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~l~~n~l~~-~~~l 240 (290)
..+ ..+++|++|++++|.+...+.++...+..+++|++|++++|.++. + ..+..+++|++|++++|.++. +..+
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~ 272 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL 272 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSC
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhc
Confidence 233 677888888888887632223443345677888888888888872 2 455667788888888888887 4444
Q ss_pred ccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccc
Q 022897 241 AKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284 (290)
Q Consensus 241 ~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~ 284 (290)
. ++|++|++++|.+++ +|. +..+++|++|+|++|++++.
T Consensus 273 ~--~~L~~L~Ls~N~l~~-~p~--~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDR-NPS--PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp C--SEEEEEECCSSCCCS-CCC--TTTSCEEEEEECTTCTTTCC
T ss_pred c--CCceEEECCCCCCCC-Chh--HhhCCCCCEEeccCCCCCCC
Confidence 4 678888888888874 444 77788888888888888764
No 32
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.3e-22 Score=170.37 Aligned_cols=196 Identities=24% Similarity=0.211 Sum_probs=159.1
Q ss_pred CcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchh
Q 022897 63 RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP 142 (290)
Q Consensus 63 ~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 142 (290)
..++.+++.++. +..++... .++++.|++++|.+.+..+. .|..+++|++|++++|.+++. +.
T Consensus 10 ~~l~~l~~~~~~---------l~~ip~~~---~~~l~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~-~~ 72 (290)
T 1p9a_G 10 ASHLEVNCDKRN---------LTALPPDL---PKDTTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRAELTKL-QV 72 (290)
T ss_dssp TTCCEEECTTSC---------CSSCCSCC---CTTCCEEECTTSCCSEEEGG----GGTTCTTCCEEECTTSCCCEE-EC
T ss_pred CCccEEECCCCC---------CCcCCCCC---CCCCCEEEcCCCcCCccCHH----HhhcCCCCCEEECCCCccCcc-cC
Confidence 456677777655 22333322 26899999999999887776 789999999999999999853 33
Q ss_pred hccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCC
Q 022897 143 YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLAD 220 (290)
Q Consensus 143 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~ 220 (290)
...+++|++|++++|.++. ++ ..+..+++|++|++++|.+ ..++...+..+++|++|++++|.++ .+..+..
T Consensus 73 -~~~l~~L~~L~Ls~N~l~~-l~-~~~~~l~~L~~L~l~~N~l---~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 146 (290)
T 1p9a_G 73 -DGTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRL---TSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146 (290)
T ss_dssp -CSCCTTCCEEECCSSCCSS-CC-CCTTTCTTCCEEECCSSCC---CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred -CCCCCcCCEEECCCCcCCc-Cc-hhhccCCCCCEEECCCCcC---cccCHHHHcCCCCCCEEECCCCCCCccChhhccc
Confidence 2789999999999999974 23 4678899999999999996 3455447889999999999999998 3455788
Q ss_pred CCCCcEEEccCCCCCC-c-cccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcc
Q 022897 221 LPNLKTLDLRDCGITT-I-QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTT 283 (290)
Q Consensus 221 l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~ 283 (290)
+++|+.|++++|+++. + ..+..+++|++|++++|.++ .+|.. +...++|+.|+|++|++..
T Consensus 147 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~-~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG-FFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT-TTTTCCCSEEECCSCCBCC
T ss_pred ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChh-hcccccCCeEEeCCCCccC
Confidence 9999999999999998 3 34688999999999999998 78887 6677899999999998864
No 33
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5.4e-23 Score=171.16 Aligned_cols=179 Identities=22% Similarity=0.229 Sum_probs=107.8
Q ss_pred CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897 92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN 171 (290)
Q Consensus 92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 171 (290)
+..+++|++|++++|.+.+. + .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++. ++..+..
T Consensus 59 l~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~ 131 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI-S-----ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDK 131 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC-G-----GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTT
T ss_pred cccCCCCcEEECCCCCCCCc-h-----hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhcc
Confidence 45566666666666666553 1 456666666666666666655555566666666666666666643 3234566
Q ss_pred CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCC
Q 022897 172 LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLE 247 (290)
Q Consensus 172 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~ 247 (290)
+++|++|++++|.+ . .++...+..+++|++|++++|.++ .+..+..+++|++|++++|.+++ +..+..+++|+
T Consensus 132 l~~L~~L~L~~n~l--~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 132 LTNLTYLNLAHNQL--Q-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp CTTCCEEECCSSCC--C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCcc--C-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 66666666666664 2 333334566666666666666666 23335566666666666666666 23356666666
Q ss_pred EEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccccc
Q 022897 248 ALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKI 288 (290)
Q Consensus 248 ~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 288 (290)
.|++++|.+.+ .+++|+.++++.|+++|.+|..
T Consensus 209 ~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 209 YIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp EEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred EEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCc
Confidence 66666665543 2345566666666666666643
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=1.4e-23 Score=191.38 Aligned_cols=217 Identities=24% Similarity=0.318 Sum_probs=169.8
Q ss_pred CCCCCceEecccc-----------CcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhh
Q 022897 50 CDDWEGVKCNATT-----------RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYD 118 (290)
Q Consensus 50 c~~w~gv~c~~~~-----------~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 118 (290)
| .|.|+ |+... ..++.++++++. +..+.+..+..+++|++|++++|.+.+..+.
T Consensus 4 C-~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~---- 68 (549)
T 2z81_A 4 C-DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNK---------ITYIGHGDLRACANLQVLILKSSRINTIEGD---- 68 (549)
T ss_dssp E-CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSC---------CCEECSSTTSSCTTCCEEECTTSCCCEECTT----
T ss_pred C-CCCce-EECCCCccccccccCCCCccEEECcCCc---------cCccChhhhhcCCcccEEECCCCCcCccChh----
Confidence 5 78887 75322 235555555544 3444556788999999999999999988776
Q ss_pred hcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhcc
Q 022897 119 SFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLAN 198 (290)
Q Consensus 119 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 198 (290)
.|..+++|++|++++|.+++..+..++.+++|++|++++|.+++...+..+..+++|++|++++|.+ .+.++...+..
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~--~~~~~~~~~~~ 146 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET--FSEIRRIDFAG 146 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS--CCEECTTTTTT
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcc--ccccCHhhhhc
Confidence 7899999999999999999888888999999999999999998643445788999999999999986 56677557899
Q ss_pred CCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC-ccc-cccCCCCCEEeCCCCCCCCcc--cccccCCCCCCC
Q 022897 199 LTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT-IQG-LAKLKNLEALDLSWNNINGSL--ESQGLADLPNLK 272 (290)
Q Consensus 199 ~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~-~~~-l~~~~~L~~L~l~~n~l~~~i--~~~~l~~l~~L~ 272 (290)
+++|++|++++|.++ .+..+..+++|++|+++.|.+.. +.. +..+++|++|++++|.+++.. +......+++|+
T Consensus 147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~ 226 (549)
T 2z81_A 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226 (549)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCC
T ss_pred ccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhccc
Confidence 999999999999998 78888999999999999998877 333 356889999999999988531 222234456666
Q ss_pred EEecCCCCCcc
Q 022897 273 ILDLRDCGMTT 283 (290)
Q Consensus 273 ~L~L~~n~l~~ 283 (290)
.|++++|.+++
T Consensus 227 ~L~l~~n~l~~ 237 (549)
T 2z81_A 227 KLAFRGSVLTD 237 (549)
T ss_dssp EEEEESCEEEH
T ss_pred ceeccccccch
Confidence 66666666554
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=3.9e-23 Score=174.83 Aligned_cols=184 Identities=23% Similarity=0.249 Sum_probs=157.4
Q ss_pred CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch-hhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897 92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL-PYLNTLTSLTTLILYSNSIEGSGTMQGLA 170 (290)
Q Consensus 92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 170 (290)
+..+++|++|++++|.+..... .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+ ..+.
T Consensus 74 ~~~~~~L~~L~Ls~n~i~~l~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~ 147 (306)
T 2z66_A 74 DFGTTSLKYLDLSFNGVITMSS-----NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFN 147 (306)
T ss_dssp HHSCSCCCEEECCSCSEEEEEE-----EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST-TTTT
T ss_pred cccccccCEEECCCCccccChh-----hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch-hhcc
Confidence 4458999999999999886433 67889999999999999986554 578899999999999999876543 4788
Q ss_pred cCCCCCeeeCCCCCCCCCC-ccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCC
Q 022897 171 NLRYLQVLDLSWNENITSG-SLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKN 245 (290)
Q Consensus 171 ~l~~L~~L~l~~n~~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~ 245 (290)
.+++|++|++++|.+ .+ .++. .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++ +..+..+++
T Consensus 148 ~l~~L~~L~l~~n~l--~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 148 GLSSLEVLKMAGNSF--QENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224 (306)
T ss_dssp TCTTCCEEECTTCEE--GGGEECS-CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred cCcCCCEEECCCCcc--ccccchh-HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence 899999999999987 44 2444 7889999999999999998 57788999999999999999998 346888999
Q ss_pred CCEEeCCCCCCCCcccccccCCCC-CCCEEecCCCCCcccc
Q 022897 246 LEALDLSWNNINGSLESQGLADLP-NLKILDLRDCGMTTIQ 285 (290)
Q Consensus 246 L~~L~l~~n~l~~~i~~~~l~~l~-~L~~L~L~~n~l~~~~ 285 (290)
|++|++++|.+++..|.. +..++ +|++|+|++|++++..
T Consensus 225 L~~L~L~~N~l~~~~~~~-~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKKQE-LQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCEEECTTSCCCBCSSSS-CCCCCTTCCEEECTTCCEECSG
T ss_pred CCEeECCCCCCcccCHHH-HHhhhccCCEEEccCCCeeccc
Confidence 999999999999766666 77774 9999999999998754
No 36
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=3.9e-22 Score=165.96 Aligned_cols=184 Identities=24% Similarity=0.241 Sum_probs=156.4
Q ss_pred cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897 91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA 170 (290)
Q Consensus 91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 170 (290)
....+++|+.|++++|.+.... .+..+++|++|++++|.+.+. +.+..+++|++|++++|.+++. ++..+.
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~------~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~-~~~~~~ 106 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQ------GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSL-PNGVFD 106 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCT------TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCC-CTTTTT
T ss_pred ccccccceeeeeeCCCCccccc------ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcc-ChhHhc
Confidence 3556789999999999887542 577899999999999999863 4788999999999999999864 444688
Q ss_pred cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCC
Q 022897 171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNL 246 (290)
Q Consensus 171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L 246 (290)
.+++|++|++++|.+ . .++...+..+++|++|++++|.++ .+..+..+++|++|++++|.+++ +..+..+++|
T Consensus 107 ~l~~L~~L~L~~n~l--~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 107 KLTNLKELVLVENQL--Q-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp TCTTCCEEECTTSCC--C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCcCCCEEECCCCcC--C-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence 999999999999996 3 455446889999999999999998 34457899999999999999998 3447899999
Q ss_pred CEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccc
Q 022897 247 EALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGK 287 (290)
Q Consensus 247 ~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~ 287 (290)
++|++++|.+++ +++..+..+++|++|++++|++.+..|.
T Consensus 184 ~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 184 KDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 999999999996 4444489999999999999999988774
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.1e-22 Score=185.40 Aligned_cols=97 Identities=23% Similarity=0.174 Sum_probs=77.7
Q ss_pred ccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC
Q 022897 84 ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 163 (290)
+..+++..++.+++|++|++++|.+.+..+. .|+.+++|++|++++|.+++..+..|..+++|++|++++|.+++.
T Consensus 87 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 87 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162 (597)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCCCChHHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence 4455556788899999999999999887776 678889999999999988866556678888999999999988764
Q ss_pred cchhhcccCCCCCeeeCCCCCC
Q 022897 164 GTMQGLANLRYLQVLDLSWNEN 185 (290)
Q Consensus 164 ~~~~~~~~l~~L~~L~l~~n~~ 185 (290)
.+ ..+..+++|++|++++|.+
T Consensus 163 ~~-~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 163 ED-DTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp CT-TTTTTCTTCCEEECTTSCC
T ss_pred Ch-hhhhcCCcCcEEECcCCCC
Confidence 33 4677888888888888875
No 38
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=2e-22 Score=165.69 Aligned_cols=188 Identities=23% Similarity=0.284 Sum_probs=150.7
Q ss_pred CCCCCCCceEeccccCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCc
Q 022897 48 DCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLK 127 (290)
Q Consensus 48 ~~c~~w~gv~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~ 127 (290)
.|+ .|.|+.|.. ....+++.+.. +..++... .+++++|++++|.+.+..+. .|..+++|+
T Consensus 3 ~Cp-~~~gC~C~~---~~~~l~~~~~~---------l~~~p~~~---~~~l~~L~L~~n~l~~~~~~----~~~~l~~L~ 62 (251)
T 3m19_A 3 TCE-TVTGCTCNE---GKKEVDCQGKS---------LDSVPSGI---PADTEKLDLQSTGLATLSDA----TFRGLTKLT 62 (251)
T ss_dssp -CH-HHHSSEEEG---GGTEEECTTCC---------CSSCCSCC---CTTCCEEECTTSCCCCCCTT----TTTTCTTCC
T ss_pred cCC-CCCceEcCC---CCeEEecCCCC---------ccccCCCC---CCCCCEEEccCCCcCccCHh----HhcCcccCC
Confidence 355 899999953 23345666654 22232221 25799999999999988776 788999999
Q ss_pred EEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEc
Q 022897 128 ILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL 207 (290)
Q Consensus 128 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l 207 (290)
+|++++|.+++..+..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+ ..++...+..+++|++|++
T Consensus 63 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L 138 (251)
T 3m19_A 63 WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKLYLGGNQL---KSLPSGVFDRLTKLKELRL 138 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEEC
T ss_pred EEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCCEEEcCCCcC---CCcChhHhccCCcccEEEC
Confidence 999999999988888889999999999999999854 445788899999999999986 3455546788999999999
Q ss_pred CCCCCC-CC-cCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCc
Q 022897 208 RGCGIT-TS-QGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGS 259 (290)
Q Consensus 208 ~~n~l~-~~-~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~ 259 (290)
++|.++ .+ ..+..+++|++|++++|.+++ +..+..+++|+.|++++|.+.+.
T Consensus 139 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999998 33 468889999999999999998 34688889999999999999865
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=181.68 Aligned_cols=174 Identities=20% Similarity=0.237 Sum_probs=122.7
Q ss_pred ccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch-hhccCCCCCCEEEccCCCCCC
Q 022897 84 ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL-PYLNTLTSLTTLILYSNSIEG 162 (290)
Q Consensus 84 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~ 162 (290)
+..+.+..+..+++|++|++++|.+++..+. .|..+++|++|++++|.+..... ..+..+++|++|++++|...+
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSS----WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSSCCHH----HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCCcCCHh----HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc
Confidence 3445556688889999999999999876654 57888999999999998875333 367788888888888885333
Q ss_pred CcchhhcccCCCCCeeeCCCCCCCC---------------------CCccchhhhccCCCccEEEcCCCCCCC-C-----
Q 022897 163 SGTMQGLANLRYLQVLDLSWNENIT---------------------SGSLTRLGLANLTNLKELDLRGCGITT-S----- 215 (290)
Q Consensus 163 ~~~~~~~~~l~~L~~L~l~~n~~~~---------------------~~~~~~~~~~~~~~L~~L~l~~n~l~~-~----- 215 (290)
..++..+..+++|++|++++|.+.. ...++...+..+++|++|++++|.++. +
T Consensus 164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 243 (353)
T 2z80_A 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243 (353)
T ss_dssp EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---
T ss_pred ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc
Confidence 3334456666666666666665411 112222223345666666666666651 1
Q ss_pred ---------------------------cCCCCCCCCcEEEccCCCCCC-ccc-cccCCCCCEEeCCCCCCCCccc
Q 022897 216 ---------------------------QGLADLPNLKTLDLRDCGITT-IQG-LAKLKNLEALDLSWNNINGSLE 261 (290)
Q Consensus 216 ---------------------------~~~~~l~~L~~L~l~~n~l~~-~~~-l~~~~~L~~L~l~~n~l~~~i~ 261 (290)
..+..+++|++|++++|.++. +.. +..+++|++|++++|.+++..|
T Consensus 244 ~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ---CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 123467899999999999998 444 5899999999999999998765
No 40
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=3.6e-23 Score=175.47 Aligned_cols=186 Identities=21% Similarity=0.124 Sum_probs=148.7
Q ss_pred CCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCc--c-hhhc
Q 022897 93 HPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSG--T-MQGL 169 (290)
Q Consensus 93 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~-~~~~ 169 (290)
..+++|++|++++|.+.+..+......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.. + ...+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 789999999999999987654322225568999999999999999888889999999999999999986521 1 1223
Q ss_pred ccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCC---CCCcEEEccCCCCCC-ccccccC
Q 022897 170 ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADL---PNLKTLDLRDCGITT-IQGLAKL 243 (290)
Q Consensus 170 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l---~~L~~L~l~~n~l~~-~~~l~~~ 243 (290)
..+++|++|++++|.+......+...+..+++|++|++++|.++ .|..+..+ ++|++|++++|.++. +..+.
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-- 271 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP-- 271 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--
Confidence 67899999999999973222222223578899999999999998 36666666 699999999999998 44443
Q ss_pred CCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcc
Q 022897 244 KNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTT 283 (290)
Q Consensus 244 ~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~ 283 (290)
++|++|++++|.+++ +|. +..+++|+.|+|++|+++.
T Consensus 272 ~~L~~L~Ls~N~l~~-~~~--~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 272 AKLRVLDLSSNRLNR-APQ--PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCSCEECCSCCCCS-CCC--TTSCCCCSCEECSSTTTSC
T ss_pred CCCCEEECCCCcCCC-Cch--hhhCCCccEEECcCCCCCC
Confidence 799999999999994 444 5678999999999999975
No 41
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=8.5e-23 Score=170.27 Aligned_cols=185 Identities=29% Similarity=0.326 Sum_probs=156.8
Q ss_pred CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897 96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL 175 (290)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 175 (290)
++|++|++++|.+++..+. .|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. ++..+..+++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTCCCCEECTT----TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTC
T ss_pred CCccEEECCCCcccccCHh----HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCccc
Confidence 4799999999999987765 788999999999999999877777889999999999999999864 33578899999
Q ss_pred CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCC---
Q 022897 176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLE--- 247 (290)
Q Consensus 176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~--- 247 (290)
++|++++|.+ . .++...+..+++|++|++++|.++ .+..+..+++|++|++++|.+++ +..+..+++|+
T Consensus 103 ~~L~l~~n~l--~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 103 QKLVAVETNL--A-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp CEEECTTSCC--C-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred cEEECCCCCc--c-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence 9999999996 3 344336889999999999999987 47789999999999999999998 34566666666
Q ss_pred -EEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccCC
Q 022897 248 -ALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290 (290)
Q Consensus 248 -~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f~ 290 (290)
.|++++|.++ .++...+ ...+|++|+|++|++++.++..|+
T Consensus 180 l~L~ls~n~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 180 LSLDLSLNPMN-FIQPGAF-KEIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp EEEECCSSCCC-EECTTSS-CSCCEEEEECCSSCCSCCCTTTTT
T ss_pred eeeecCCCccc-ccCcccc-CCCcccEEECCCCceeecCHhHhc
Confidence 8999999998 5666534 445899999999999999887763
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=7.1e-22 Score=182.63 Aligned_cols=96 Identities=22% Similarity=0.184 Sum_probs=66.7
Q ss_pred ccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcc
Q 022897 86 LLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGT 165 (290)
Q Consensus 86 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 165 (290)
.+++..|.++++|++|+|++|.+++..+. .|.++++|++|++++|.+++..+..|+++++|++|++++|.++....
T Consensus 90 ~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~----~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~ 165 (635)
T 4g8a_A 90 TIEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 165 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECGG----GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC
T ss_pred CcChhHhcCCCCCCEEEccCCcCCCCCHH----HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCC
Confidence 44455566677777777777776665554 67777777777777777776555567778888888888887765444
Q ss_pred hhhcccCCCCCeeeCCCCCC
Q 022897 166 MQGLANLRYLQVLDLSWNEN 185 (290)
Q Consensus 166 ~~~~~~l~~L~~L~l~~n~~ 185 (290)
+..+..+++|++|++++|.+
T Consensus 166 ~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 166 PEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CGGGGGCTTCCEEECCSSCC
T ss_pred chhhccchhhhhhcccCccc
Confidence 45667777788777777654
No 43
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=6.8e-22 Score=165.98 Aligned_cols=156 Identities=29% Similarity=0.233 Sum_probs=72.1
Q ss_pred cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897 91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA 170 (290)
Q Consensus 91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 170 (290)
.+..+++|++|++++|.+++..+ ...+++|++|++++|.+. .+|..+..+++|++|++++|.+++. ++..+.
T Consensus 50 ~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~ 121 (290)
T 1p9a_G 50 TLMPYTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL-PLGALR 121 (290)
T ss_dssp GGTTCTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCC-CSSTTT
T ss_pred HhhcCCCCCEEECCCCccCcccC------CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCccc-CHHHHc
Confidence 34445555555555555443321 134445555555555544 3344444455555555555555432 222444
Q ss_pred cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CC-cCCCCCCCCcEEEccCCCCCC-ccccccCCCCC
Q 022897 171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TS-QGLADLPNLKTLDLRDCGITT-IQGLAKLKNLE 247 (290)
Q Consensus 171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~ 247 (290)
.+++|++|++++|.+ ..++...+..+++|++|++++|+++ .+ ..+..+++|++|++++|.++. +..+...++|+
T Consensus 122 ~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~ 198 (290)
T 1p9a_G 122 GLGELQELYLKGNEL---KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198 (290)
T ss_dssp TCTTCCEEECTTSCC---CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCS
T ss_pred CCCCCCEEECCCCCC---CccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCC
Confidence 455555555555543 1233323444455555555555554 22 223444555555555555554 33344444555
Q ss_pred EEeCCCCCCC
Q 022897 248 ALDLSWNNIN 257 (290)
Q Consensus 248 ~L~l~~n~l~ 257 (290)
.|++++|.+.
T Consensus 199 ~l~L~~Np~~ 208 (290)
T 1p9a_G 199 FAFLHGNPWL 208 (290)
T ss_dssp EEECCSCCBC
T ss_pred eEEeCCCCcc
Confidence 5555555443
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=3e-22 Score=191.24 Aligned_cols=196 Identities=25% Similarity=0.309 Sum_probs=123.3
Q ss_pred ccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhh--ccCCCCCCEEEccCCCCCCC
Q 022897 86 LLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY--LNTLTSLTTLILYSNSIEGS 163 (290)
Q Consensus 86 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~ 163 (290)
.+.+..++++++|++|++++|.+.+..+. .|..+++|++|++++|.+++..|.. +..+++|++|++++|.+++.
T Consensus 63 ~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~ 138 (844)
T 3j0a_A 63 TIDKEAFRNLPNLRILDLGSSKIYFLHPD----AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138 (844)
T ss_dssp EECTTTTSSCTTCCEEECTTCCCCEECTT----SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCcccCHh----HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence 34456677888888888888888777665 7777888888888888877655554 67778888888888877765
Q ss_pred cchhhcccCCCCCeeeCCCCCCCCCCccchhhh--------------------------cc-------------------
Q 022897 164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGL--------------------------AN------------------- 198 (290)
Q Consensus 164 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--------------------------~~------------------- 198 (290)
.++..+..+++|++|++++|.+... .+. .+ ..
T Consensus 139 ~~~~~~~~L~~L~~L~Ls~N~i~~~--~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 139 YLHPSFGKLNSLKSIDFSSNQIFLV--CEH-ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp CCCGGGGTCSSCCEEEEESSCCCCC--CSG-GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred ccchhHhhCCCCCEEECCCCcCCee--CHH-HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc
Confidence 5544677777777777777765211 110 00 00
Q ss_pred -------------------------------------------------CCCccEEEcCCCCCC--CCcCCCCCCCCcEE
Q 022897 199 -------------------------------------------------LTNLKELDLRGCGIT--TSQGLADLPNLKTL 227 (290)
Q Consensus 199 -------------------------------------------------~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L 227 (290)
.++|+.|++++|.+. .+..+..+++|+.|
T Consensus 216 l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 295 (844)
T 3j0a_A 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295 (844)
T ss_dssp SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEE
T ss_pred CchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEE
Confidence 123444444444444 33445556666666
Q ss_pred EccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 228 DLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 228 ~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
++++|.+++ +..+..+++|++|++++|.+++..|.. +..+++|++|++++|+++++++..|
T Consensus 296 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~ 358 (844)
T 3j0a_A 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN-FYGLPKVAYIDLQKNHIAIIQDQTF 358 (844)
T ss_dssp EEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS-CSSCTTCCEEECCSCCCCCCCSSCS
T ss_pred ECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH-hcCCCCCCEEECCCCCCCccChhhh
Confidence 666666665 344566666666666666666433433 6666666666776666666666554
No 45
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.1e-21 Score=161.26 Aligned_cols=178 Identities=24% Similarity=0.222 Sum_probs=151.9
Q ss_pred CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897 96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL 175 (290)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 175 (290)
...++++++++.++..+. .+. +.+++|++++|.+.+..+..+..+++|++|++++|.+++. ++..+..+++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~-----~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L 85 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPS-----GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTEL 85 (251)
T ss_dssp GGGTEEECTTCCCSSCCS-----CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTC
T ss_pred CCCeEEecCCCCccccCC-----CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcC
Confidence 356789999999886543 232 6899999999999988888899999999999999999875 44578899999
Q ss_pred CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-C-CcCCCCCCCCcEEEccCCCCCC-c-cccccCCCCCEEeC
Q 022897 176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-T-SQGLADLPNLKTLDLRDCGITT-I-QGLAKLKNLEALDL 251 (290)
Q Consensus 176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~-~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l 251 (290)
++|++++|.+ . .++...+..+++|++|++++|.++ . +..+..+++|++|++++|.+++ + ..+..+++|++|+|
T Consensus 86 ~~L~L~~n~l--~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 86 GTLGLANNQL--A-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp CEEECTTSCC--C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcc--c-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence 9999999996 3 455547889999999999999998 3 3457889999999999999999 3 35889999999999
Q ss_pred CCCCCCCcccccccCCCCCCCEEecCCCCCcccc
Q 022897 252 SWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ 285 (290)
Q Consensus 252 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~ 285 (290)
++|.++ .++...+..+++|++|+|++|++++..
T Consensus 163 ~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 163 STNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp CSSCCS-CCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred CCCcCC-ccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 999999 455544899999999999999998864
No 46
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.3e-21 Score=162.61 Aligned_cols=191 Identities=26% Similarity=0.316 Sum_probs=155.9
Q ss_pred CCCceEeccccC---------cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCC
Q 022897 52 DWEGVKCNATTR---------RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGS 122 (290)
Q Consensus 52 ~w~gv~c~~~~~---------~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~ 122 (290)
.|..+.|..... .++.++++++ .+..+++..+..+++|++|++++|.++...+. .|..
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n---------~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~----~~~~ 83 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSN---------KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG----IFKE 83 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCSS---------CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT----TTSS
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcCC---------CCCeeCHHHhcCCCCCCEEECCCCccCeeChh----hhcC
Confidence 578899964221 2333334333 34555666788999999999999999877665 6788
Q ss_pred CCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCc
Q 022897 123 LKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNL 202 (290)
Q Consensus 123 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 202 (290)
+++|++|++++|.+....+..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+ ..++...+..+++|
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNEL---QSLPKGVFDKLTSL 159 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTC
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCee-CHHHhCcCcCCCEEECCCCcC---CccCHhHccCCccc
Confidence 99999999999999987777888999999999999999865 445788999999999999996 34555468899999
Q ss_pred cEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCc
Q 022897 203 KELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGS 259 (290)
Q Consensus 203 ~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~ 259 (290)
++|++++|.++ .+..+..+++|++|++++|.+++ +..+..+++|+.|++++|.+...
T Consensus 160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 99999999998 34468899999999999999998 33588899999999999998743
No 47
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1e-21 Score=166.34 Aligned_cols=195 Identities=31% Similarity=0.342 Sum_probs=162.3
Q ss_pred cCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch
Q 022897 62 TRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL 141 (290)
Q Consensus 62 ~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 141 (290)
..+++.+++.++. + ..+ ..+..+++|++|++++|.+.+.. .+..+++|++|++++|.+.+.
T Consensus 40 l~~L~~L~l~~~~----i-----~~l--~~~~~l~~L~~L~L~~n~i~~~~------~~~~l~~L~~L~L~~n~l~~~-- 100 (308)
T 1h6u_A 40 LDGITTLSAFGTG----V-----TTI--EGVQYLNNLIGLELKDNQITDLA------PLKNLTKITELELSGNPLKNV-- 100 (308)
T ss_dssp HHTCCEEECTTSC----C-----CCC--TTGGGCTTCCEEECCSSCCCCCG------GGTTCCSCCEEECCSCCCSCC--
T ss_pred cCCcCEEEeeCCC----c-----cCc--hhhhccCCCCEEEccCCcCCCCh------hHccCCCCCEEEccCCcCCCc--
Confidence 3456777777765 1 122 24677899999999999998753 278899999999999999863
Q ss_pred hhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCC
Q 022897 142 PYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADL 221 (290)
Q Consensus 142 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l 221 (290)
+.+..+++|++|++++|.+++. + .+..+++|++|++++|.+ ..++ .+..+++|++|++++|.++....+..+
T Consensus 101 ~~~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l---~~~~--~l~~l~~L~~L~l~~n~l~~~~~l~~l 172 (308)
T 1h6u_A 101 SAIAGLQSIKTLDLTSTQITDV-T--PLAGLSNLQVLYLDLNQI---TNIS--PLAGLTNLQYLSIGNAQVSDLTPLANL 172 (308)
T ss_dssp GGGTTCTTCCEEECTTSCCCCC-G--GGTTCTTCCEEECCSSCC---CCCG--GGGGCTTCCEEECCSSCCCCCGGGTTC
T ss_pred hhhcCCCCCCEEECCCCCCCCc-h--hhcCCCCCCEEECCCCcc---CcCc--cccCCCCccEEEccCCcCCCChhhcCC
Confidence 4688999999999999999873 2 488999999999999996 3344 378999999999999999844448899
Q ss_pred CCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897 222 PNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG 286 (290)
Q Consensus 222 ~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~ 286 (290)
++|++|++++|.+++.+.+..+++|++|++++|.+++ +++ +..+++|++|++++|++++.+.
T Consensus 173 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 173 SKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD-VSP--LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCB-CGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCc-ccc--ccCCCCCCEEEccCCeeecCCe
Confidence 9999999999999996669999999999999999994 553 7889999999999999988544
No 48
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=2.6e-22 Score=160.32 Aligned_cols=175 Identities=23% Similarity=0.221 Sum_probs=143.6
Q ss_pred CCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCC
Q 022897 95 FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRY 174 (290)
Q Consensus 95 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 174 (290)
.++|++|++++|.+++..+. .|..+++|++|++++|.+++..+..+..+++|++|++++|.+++. ++..+..+++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~ 101 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNG----VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQ 101 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTT
T ss_pred CCCCcEEEcCCCccCcCChh----hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccC
Confidence 35799999999999877665 678999999999999999977667788999999999999999854 4456789999
Q ss_pred CCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-C-CcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCC
Q 022897 175 LQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-T-SQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLS 252 (290)
Q Consensus 175 L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~-~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~ 252 (290)
|++|++++|.+ . .++...+..+++|++|++++|.++ . +..+..+++|++|++++|.+.. .++.|+.|+++
T Consensus 102 L~~L~L~~N~l--~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----~~~~l~~L~~~ 173 (208)
T 2o6s_A 102 LKELALNTNQL--Q-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----TCPGIRYLSEW 173 (208)
T ss_dssp CCEEECCSSCC--C-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----CTTTTHHHHHH
T ss_pred CCEEEcCCCcC--c-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----CCCCHHHHHHH
Confidence 99999999986 3 455546788999999999999998 3 3457889999999999997764 45688999999
Q ss_pred CCCCCCcccccccCCCCCCCEEecCCCCCcccccc
Q 022897 253 WNNINGSLESQGLADLPNLKILDLRDCGMTTIQGK 287 (290)
Q Consensus 253 ~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~ 287 (290)
.|.++|.+|.. ++.++. ++..|...+.++.
T Consensus 174 ~n~~~g~ip~~-~~~l~~----~~~~C~~~~~~~~ 203 (208)
T 2o6s_A 174 INKHSGVVRNS-AGSVAP----DSAKCSGSGKPVR 203 (208)
T ss_dssp HHHCTTTBBCT-TSSBCT----TCSBBTTTCCBGG
T ss_pred HHhCCceeecc-CccccC----CccccccCCCcce
Confidence 99999999987 776654 5555665555544
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.2e-22 Score=182.40 Aligned_cols=202 Identities=25% Similarity=0.252 Sum_probs=132.0
Q ss_pred cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchh-
Q 022897 64 RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP- 142 (290)
Q Consensus 64 ~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~- 142 (290)
+++.++++++. +..+.+..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+.
T Consensus 35 ~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~~~~ 99 (487)
T 3oja_A 35 NVKELDLSGNP---------LSQISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELLVGP 99 (487)
T ss_dssp GCCEEECCSSC---------CCCCCGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEEEECT
T ss_pred CccEEEeeCCc---------CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCCCCCC
Confidence 56666666655 223334456667777777777777765432 45556666666666555421110
Q ss_pred ---------------hccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhh-ccCCCccEEE
Q 022897 143 ---------------YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGL-ANLTNLKELD 206 (290)
Q Consensus 143 ---------------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~~~~L~~L~ 206 (290)
....+++|++|++++|.+++..+ ..+..+++|++|++++|.+ .+..+. .+ ..+++|++|+
T Consensus 100 ~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l--~~~~~~-~l~~~l~~L~~L~ 175 (487)
T 3oja_A 100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEI--DTVNFA-ELAASSDTLEHLN 175 (487)
T ss_dssp TCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGG-BCGGGGSSEEEEECTTSCC--CEEEGG-GGGGGTTTCCEEE
T ss_pred CcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCc-hhhcCCCCCCEEECCCCCC--CCcChH-HHhhhCCcccEEe
Confidence 01234667777777777765433 3566777888888888876 444444 34 3677888888
Q ss_pred cCCCCCCCCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCc-cc
Q 022897 207 LRGCGITTSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMT-TI 284 (290)
Q Consensus 207 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~-~~ 284 (290)
|++|.++..+....+++|++|++++|.+++ ++.+..+++|+.|++++|.++ .+|.. +..+++|+.|++++|++. +.
T Consensus 176 Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 176 LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp CTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTT-CCCCTTCCEEECTTCCBCHHH
T ss_pred cCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchh-hccCCCCCEEEcCCCCCcCcc
Confidence 888887733444567788888888888887 566777888888888888887 46766 777788888888888877 44
Q ss_pred cc
Q 022897 285 QG 286 (290)
Q Consensus 285 ~~ 286 (290)
+|
T Consensus 254 ~~ 255 (487)
T 3oja_A 254 LR 255 (487)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 50
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.7e-23 Score=193.91 Aligned_cols=192 Identities=14% Similarity=0.218 Sum_probs=117.1
Q ss_pred CCcCC--CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCc-CCC-CchhhccCC------CCCCEEEccCC
Q 022897 89 MSLFH--PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNF-FND-SILPYLNTL------TSLTTLILYSN 158 (290)
Q Consensus 89 ~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n 158 (290)
+..++ ++++|++|++++|.+.+.+|. .+.++++|++|++++|. +++ .+|..++.+ ++|++|++++|
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPT----FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCT----TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChH----HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 34455 677777777777777776665 66777777777777776 666 566666554 67777777777
Q ss_pred CCCCCcch-hhcccCCCCCeeeCCCCCCCCCCccc----------------------hhhhccCCC-ccEEEcCCCCCC-
Q 022897 159 SIEGSGTM-QGLANLRYLQVLDLSWNENITSGSLT----------------------RLGLANLTN-LKELDLRGCGIT- 213 (290)
Q Consensus 159 ~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~----------------------~~~~~~~~~-L~~L~l~~n~l~- 213 (290)
.++ .++. ..+..+++|++|++++|.+ .+.+| . .+..+++ |++|++++|.++
T Consensus 316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l--~g~ip~~~~l~~L~~L~L~~N~l~~lp~-~l~~l~~~L~~L~Ls~N~l~~ 391 (636)
T 4eco_A 316 NLK-TFPVETSLQKMKKLGMLECLYNQL--EGKLPAFGSEIKLASLNLAYNQITEIPA-NFCGFTEQVENLSFAHNKLKY 391 (636)
T ss_dssp CCS-SCCCHHHHTTCTTCCEEECCSCCC--EEECCCCEEEEEESEEECCSSEEEECCT-TSEEECTTCCEEECCSSCCSS
T ss_pred cCC-ccCchhhhccCCCCCEEeCcCCcC--ccchhhhCCCCCCCEEECCCCccccccH-hhhhhcccCcEEEccCCcCcc
Confidence 766 3331 1566666666666666665 33444 2 3444444 555555555554
Q ss_pred CCcCCCCCC--CCcEEEccCCCCCC--ccccc-------cCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCc
Q 022897 214 TSQGLADLP--NLKTLDLRDCGITT--IQGLA-------KLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMT 282 (290)
Q Consensus 214 ~~~~~~~l~--~L~~L~l~~n~l~~--~~~l~-------~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~ 282 (290)
+|..+..+. +|++|++++|.+++ +..+. .+++|++|++++|.++ .+|...+..+++|++|+|++|+++
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC
Confidence 444443333 55666666665555 33344 4556666777777666 566554556677777777777777
Q ss_pred ccccccC
Q 022897 283 TIQGKIF 289 (290)
Q Consensus 283 ~~~~~~f 289 (290)
.+++..|
T Consensus 471 ~i~~~~~ 477 (636)
T 4eco_A 471 EIPKNSL 477 (636)
T ss_dssp BCCSSSS
T ss_pred CcCHHHh
Confidence 5555444
No 51
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=9.3e-24 Score=179.25 Aligned_cols=180 Identities=23% Similarity=0.258 Sum_probs=148.9
Q ss_pred CCCCCcEEECCCCcccCccchhhhhhc--CCCCCCcEEECCCCcCCCCchhhccCC-----CCCCEEEccCCCCCCCcch
Q 022897 94 PFEELQSLNLSDNWFRGFYENKAYDSF--GSLKQLKILDLGCNFFNDSILPYLNTL-----TSLTTLILYSNSIEGSGTM 166 (290)
Q Consensus 94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~ 166 (290)
.+++|++|++++|.+++..+. .+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+++. ++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~----~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~ 166 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPP----PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF-SC 166 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCC----CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC-CT
T ss_pred CcCCccEEEccCCcccchhHH----HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc-hH
Confidence 588999999999999987776 44 8899999999999999876 7777666 8999999999999875 43
Q ss_pred hhcccCCCCCeeeCCCCCCCCCCc--cch-hhhccCCCccEEEcCCCCCCC----C-cCCCCCCCCcEEEccCCCCCC-c
Q 022897 167 QGLANLRYLQVLDLSWNENITSGS--LTR-LGLANLTNLKELDLRGCGITT----S-QGLADLPNLKTLDLRDCGITT-I 237 (290)
Q Consensus 167 ~~~~~l~~L~~L~l~~n~~~~~~~--~~~-~~~~~~~~L~~L~l~~n~l~~----~-~~~~~l~~L~~L~l~~n~l~~-~ 237 (290)
..+..+++|++|++++|.+ .+. ++. ..+..+++|++|++++|.++. + ..+..+++|++|++++|.+++ +
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPE--LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp TTCCCCSSCCEEECCSCTT--CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred HHhccCCCCCEEECCCCCc--CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 5889999999999999986 443 232 123788999999999999872 1 233577899999999999998 3
Q ss_pred --cccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccc
Q 022897 238 --QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ 285 (290)
Q Consensus 238 --~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~ 285 (290)
+.+..+++|++|++++|.++ .+|.. +. ++|++|+|++|+|++.+
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~-~ip~~-~~--~~L~~L~Ls~N~l~~~p 290 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLK-QVPKG-LP--AKLSVLDLSYNRLDRNP 290 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCS-SCCSS-CC--SEEEEEECCSSCCCSCC
T ss_pred chhhhhhcCCCCEEECCCCccC-hhhhh-cc--CCceEEECCCCCCCCCh
Confidence 45667899999999999998 78887 44 89999999999999983
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=2e-22 Score=185.87 Aligned_cols=184 Identities=24% Similarity=0.210 Sum_probs=86.0
Q ss_pred CCCCCCCcEEECCCCcccCcc--chhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhc
Q 022897 92 FHPFEELQSLNLSDNWFRGFY--ENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGL 169 (290)
Q Consensus 92 ~~~~~~L~~L~l~~n~l~~~~--~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 169 (290)
+..+++|++|++++|.+++.. +. .+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..+...+
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~----~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSY----SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCH----HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred hccCCCCCEEECcCCccCCCcchhh----hhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh
Confidence 445566666666666665442 22 34445555555555555442 334444455555555555554443332344
Q ss_pred ccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCC--ccccccCC
Q 022897 170 ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITT--IQGLAKLK 244 (290)
Q Consensus 170 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~ 244 (290)
..+++|++|++++|.+ .+..+. .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++ +..+..++
T Consensus 421 ~~l~~L~~L~l~~n~l--~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNT--KIDFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp TTCTTCCEEECTTSCC--EECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hccccCCEEECcCCCC--Cccchh-hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence 4445555555555543 222222 3444444444444444443 23344444444444444444444 23344444
Q ss_pred CCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccc
Q 022897 245 NLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284 (290)
Q Consensus 245 ~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~ 284 (290)
+|++|++++|.+++.+|.. +..+++|++|+|++|+++.+
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~ 536 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSH-YNQLYSLSTLDCSFNRIETS 536 (606)
T ss_dssp TCCEEECCSSCCSCEEGGG-TTTCTTCCEEECTTSCCCCE
T ss_pred cCCEEECCCCcCCCcCHHH-ccCCCcCCEEECCCCcCccc
Confidence 4444444444444333333 44444444444444444433
No 53
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=7.8e-22 Score=184.26 Aligned_cols=198 Identities=24% Similarity=0.296 Sum_probs=150.2
Q ss_pred cccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC-
Q 022897 85 SLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS- 163 (290)
Q Consensus 85 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~- 163 (290)
..+.+..+..+++|++|++++|.+.+..+.. .|..+++|++|++++|.+.+..+..+..+++|++|++++|.+...
T Consensus 394 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 470 (680)
T 1ziw_A 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQ---EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCEEECCSG---GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTT
T ss_pred CeEChhhhhCCCCCCEEeCCCCcCccccCcc---cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccc
Confidence 3444566778888888888888887654421 677888888888888888777777777888888888888877531
Q ss_pred cchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CC---------cCCCCCCCCcEEEccCCC
Q 022897 164 GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TS---------QGLADLPNLKTLDLRDCG 233 (290)
Q Consensus 164 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~---------~~~~~l~~L~~L~l~~n~ 233 (290)
..+..+..+++|++|++++|.+ . .++...+..+++|++|++++|.++ .+ ..+..+++|++|++++|.
T Consensus 471 ~~p~~~~~l~~L~~L~Ls~N~l--~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 471 SSPSPFQPLRNLTILDLSNNNI--A-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp CSSCTTTTCTTCCEEECCSSCC--C-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred cCCcccccCCCCCEEECCCCCC--C-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence 2234677888888888888885 3 455446788888888888888876 11 126778888888888888
Q ss_pred CCC-c-cccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 234 ITT-I-QGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 234 l~~-~-~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
++. + ..+..+++|++|++++|.++ .+|...+..+++|+.|+|++|++++.++..|
T Consensus 548 l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 548 FDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred CCCCCHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence 887 3 34788888888888888888 5766667888888888888888888877643
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=5.7e-22 Score=185.16 Aligned_cols=189 Identities=25% Similarity=0.266 Sum_probs=99.9
Q ss_pred CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897 92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN 171 (290)
Q Consensus 92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 171 (290)
++++++|++|++++|.+....+. .|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+ ..+..
T Consensus 69 ~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~ 143 (680)
T 1ziw_A 69 CQKLPMLKVLNLQHNELSQLSDK----TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQVQ 143 (680)
T ss_dssp HHHCTTCCEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC-CSSSC
T ss_pred HhcccCcCEEECCCCccCccChh----hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc-hhhcc
Confidence 33444444444444444433332 34445555555555555544444444455555555555555443322 23444
Q ss_pred CCCCCeeeCCCCCCCCCCccchhhh--ccCCCccEEEcCCCCCC--CCcCCCCC--------------------------
Q 022897 172 LRYLQVLDLSWNENITSGSLTRLGL--ANLTNLKELDLRGCGIT--TSQGLADL-------------------------- 221 (290)
Q Consensus 172 l~~L~~L~l~~n~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~--~~~~~~~l-------------------------- 221 (290)
+++|++|++++|.+ .+ ++...+ ..+++|++|++++|.++ .+..+..+
T Consensus 144 l~~L~~L~L~~n~l--~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~ 220 (680)
T 1ziw_A 144 LENLQELLLSNNKI--QA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA 220 (680)
T ss_dssp CTTCCEEECCSSCC--CC-BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHT
T ss_pred cccCCEEEccCCcc--cc-cCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhh
Confidence 55555555555553 21 221122 23355666666666554 22222211
Q ss_pred -CCCcEEEccCCCCCC--ccccccCC--CCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 222 -PNLKTLDLRDCGITT--IQGLAKLK--NLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 222 -~~L~~L~l~~n~l~~--~~~l~~~~--~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
++|++|++++|.+++ +..+..++ +|++|++++|.+++..|.. +..+++|++|++++|++++.+|..|
T Consensus 221 ~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (680)
T 1ziw_A 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS-FAWLPQLEYFFLEYNNIQHLFSHSL 292 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSCCBSEECTTTT
T ss_pred hccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc-ccCcccccEeeCCCCccCccChhhh
Confidence 345555566665555 33444443 4888888888887444444 7888888888888888888877655
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=1.6e-21 Score=166.62 Aligned_cols=177 Identities=24% Similarity=0.308 Sum_probs=129.6
Q ss_pred CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897 96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL 175 (290)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 175 (290)
+.++.|++++|.+++..+. .|..+++|++|++++|.+++..|..+..+++|++|++++|.++. .+. .+ .++|
T Consensus 52 ~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~-~~--~~~L 123 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPE-KM--PKTL 123 (330)
T ss_dssp TTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCS-SC--CTTC
T ss_pred CCCeEEECCCCcCCEeChh----hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cCh-hh--cccc
Confidence 6899999999999988776 78999999999999999998889999999999999999999874 232 22 2799
Q ss_pred CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC----CCcCCCCCCCCcEEEccCCCCCC---------------
Q 022897 176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT----TSQGLADLPNLKTLDLRDCGITT--------------- 236 (290)
Q Consensus 176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~l~~L~~L~l~~n~l~~--------------- 236 (290)
++|++++|.+ ..++...+..+++|++|++++|.+. .+..+..+++|++|++++|.++.
T Consensus 124 ~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~ 200 (330)
T 1xku_A 124 QELRVHENEI---TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 200 (330)
T ss_dssp CEEECCSSCC---CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECT
T ss_pred cEEECCCCcc---cccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECC
Confidence 9999999996 3455557899999999999999885 34455666666666666665554
Q ss_pred --------ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccc
Q 022897 237 --------IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284 (290)
Q Consensus 237 --------~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~ 284 (290)
+..+..+++|+.|++++|.+++ ++...+..+++|++|+|++|+++.+
T Consensus 201 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l 255 (330)
T 1xku_A 201 GNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLVKV 255 (330)
T ss_dssp TSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCCEEECCSSCCSSC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhhccCCCCCCEEECCCCcCccC
Confidence 2334445555555555555552 2222255555555555555555533
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=7.4e-23 Score=174.06 Aligned_cols=203 Identities=25% Similarity=0.224 Sum_probs=139.0
Q ss_pred cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchh-
Q 022897 64 RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP- 142 (290)
Q Consensus 64 ~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~- 142 (290)
.++.++++++. +..+.+..+..+++|++|++++|.+.+.. .+..+++|++|++++|.+++..+.
T Consensus 35 ~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~l~~L~~L~Ls~n~l~~l~~~~ 99 (317)
T 3o53_A 35 NVKELDLSGNP---------LSQISAADLAPFTKLELLNLSSNVLYETL------DLESLSTLRTLDLNNNYVQELLVGP 99 (317)
T ss_dssp GCSEEECTTSC---------CCCCCHHHHTTCTTCCEEECTTSCCEEEE------EETTCTTCCEEECCSSEEEEEEECT
T ss_pred CCCEEECcCCc---------cCcCCHHHhhCCCcCCEEECCCCcCCcch------hhhhcCCCCEEECcCCccccccCCC
Confidence 46666666655 33344456778889999999999887654 267788888888888876532110
Q ss_pred ---------------hccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEc
Q 022897 143 ---------------YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDL 207 (290)
Q Consensus 143 ---------------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l 207 (290)
....+++|++|++++|.+++. ++..+..+++|++|++++|.+ .+..+......+++|++|++
T Consensus 100 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEI--DTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp TCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSG-GGBCTGGGSSEEEEECTTSCC--CEEEGGGGGGGTTTCCEEEC
T ss_pred CcCEEECCCCccCCcCccccCCCCEEECCCCCCCCc-cchhhhccCCCCEEECCCCCC--CcccHHHHhhccCcCCEEEC
Confidence 011245566666666666543 223566677788888888775 33223312346778888888
Q ss_pred CCCCCCCCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCc-ccc
Q 022897 208 RGCGITTSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMT-TIQ 285 (290)
Q Consensus 208 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~-~~~ 285 (290)
++|.++..+....+++|++|++++|.+++ ++.+..+++|++|++++|.++ .+|.. +..+++|++|++++|+++ +.+
T Consensus 177 ~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~-~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 177 QYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp TTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTT-CCCCTTCCEEECTTCCCBHHHH
T ss_pred CCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhH-hhcCCCCCEEEccCCCccCcCH
Confidence 88888733444457888888888888887 556778888888888888887 67776 777888888888888887 444
Q ss_pred c
Q 022897 286 G 286 (290)
Q Consensus 286 ~ 286 (290)
|
T Consensus 255 ~ 255 (317)
T 3o53_A 255 R 255 (317)
T ss_dssp H
T ss_pred H
Confidence 4
No 57
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=3.5e-22 Score=163.08 Aligned_cols=183 Identities=17% Similarity=0.178 Sum_probs=152.8
Q ss_pred ccccCCCcCCCCCCCcEEECCCCc-ccCccchhhhhhcCCCCCCcEEECCC-CcCCCCchhhccCCCCCCEEEccCCCCC
Q 022897 84 ASLLNMSLFHPFEELQSLNLSDNW-FRGFYENKAYDSFGSLKQLKILDLGC-NFFNDSILPYLNTLTSLTTLILYSNSIE 161 (290)
Q Consensus 84 ~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 161 (290)
+..++...+..+++|++|++++|. ++...+. .|..+++|++|++++ |.++...+..|..+++|++|++++|.++
T Consensus 43 l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~ 118 (239)
T 2xwt_C 43 LRTIPSHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118 (239)
T ss_dssp CSEECTTTTTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC
T ss_pred ceEECHHHccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc
Confidence 455666678899999999999997 8877665 788999999999998 9998766778899999999999999998
Q ss_pred CCcchhhcccCCCCC---eeeCCCC-CCCCCCccchhhhccCCCcc-EEEcCCCCCC-CCcCCCCCCCCcEEEccCCC-C
Q 022897 162 GSGTMQGLANLRYLQ---VLDLSWN-ENITSGSLTRLGLANLTNLK-ELDLRGCGIT-TSQGLADLPNLKTLDLRDCG-I 234 (290)
Q Consensus 162 ~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~~~~~~~L~-~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~-l 234 (290)
+ .+ .+..+++|+ +|++++| . ...++...+..+++|+ +|++++|.++ ++......++|++|++++|+ +
T Consensus 119 ~-lp--~~~~l~~L~~L~~L~l~~N~~---l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l 192 (239)
T 2xwt_C 119 M-FP--DLTKVYSTDIFFILEITDNPY---MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYL 192 (239)
T ss_dssp S-CC--CCTTCCBCCSEEEEEEESCTT---CCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTC
T ss_pred c-cc--ccccccccccccEEECCCCcc---hhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCc
Confidence 7 33 277788888 9999999 6 4566665788999999 9999999998 55444444899999999995 8
Q ss_pred CC--ccccccC-CCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCC
Q 022897 235 TT--IQGLAKL-KNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCG 280 (290)
Q Consensus 235 ~~--~~~l~~~-~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~ 280 (290)
+. +..+..+ ++|+.|++++|.++ .+|.. .+++|+.|+++++.
T Consensus 193 ~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 193 TVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC-
T ss_pred ccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCcc
Confidence 88 4567888 99999999999998 67754 57899999998874
No 58
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=2.4e-21 Score=177.21 Aligned_cols=91 Identities=23% Similarity=0.237 Sum_probs=58.7
Q ss_pred ccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC----ccccccCCCCCEEeCCCCCCCCcccccccCCCCC
Q 022897 197 ANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT----IQGLAKLKNLEALDLSWNNINGSLESQGLADLPN 270 (290)
Q Consensus 197 ~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~----~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~ 270 (290)
..+++|++|++++|.++ .+..+..+++|++|++++|.+++ +..+..+++|++|++++|.+++.+|...+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 34456666777777666 45566677777777777777765 2346667777777777777775566554566666
Q ss_pred CCEEecCCCCCcccccc
Q 022897 271 LKILDLRDCGMTTIQGK 287 (290)
Q Consensus 271 L~~L~L~~n~l~~~~~~ 287 (290)
|++|++++|++++.+|.
T Consensus 430 L~~L~l~~n~l~~~~~~ 446 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFR 446 (562)
T ss_dssp CCEEECCSSCCCGGGGS
T ss_pred CCEEECCCCCCCcchhh
Confidence 66666666666655444
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=177.05 Aligned_cols=92 Identities=18% Similarity=0.182 Sum_probs=65.8
Q ss_pred ccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC----ccccccCCCCCEEeCCCCCCCCcccccccCCCCC
Q 022897 197 ANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT----IQGLAKLKNLEALDLSWNNINGSLESQGLADLPN 270 (290)
Q Consensus 197 ~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~----~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~ 270 (290)
..+++|++|++++|.++ .+..+..+++|++|++++|.+++ +..+..+++|++|++++|.+++.+|...+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 45567777777777776 46667777788888888888776 2446777888888888888876577655666777
Q ss_pred CCEEecCCCCCccccccc
Q 022897 271 LKILDLRDCGMTTIQGKI 288 (290)
Q Consensus 271 L~~L~L~~n~l~~~~~~~ 288 (290)
|++|++++|++++..|..
T Consensus 401 L~~L~Ls~N~l~~~~~~~ 418 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRC 418 (520)
T ss_dssp CCEEECCSSCCCGGGGGS
T ss_pred CCEEECcCCCCCcchhhh
Confidence 777777777776665543
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=2.6e-21 Score=165.57 Aligned_cols=195 Identities=23% Similarity=0.256 Sum_probs=145.8
Q ss_pred ccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC
Q 022897 84 ASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS 163 (290)
Q Consensus 84 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 163 (290)
+..+.+..+..+++|++|++++|.+...... +. ++|++|++++|.+....+..+..+++|++|++++|.++..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-----~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 162 (332)
T 2ft3_A 90 ISKIHEKAFSPLRKLQKLYISKNHLVEIPPN-----LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162 (332)
T ss_dssp CCEECGGGSTTCTTCCEEECCSSCCCSCCSS-----CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG
T ss_pred cCccCHhHhhCcCCCCEEECCCCcCCccCcc-----cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC
Confidence 3444556788889999999999988754332 22 6788888888888766666677888888888888877521
Q ss_pred -cchhhcccC--------------------CCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCC
Q 022897 164 -GTMQGLANL--------------------RYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLAD 220 (290)
Q Consensus 164 -~~~~~~~~l--------------------~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~ 220 (290)
..+..+..+ ++|++|++++|.+ . .++...+..+++|++|++++|.++ .+..+..
T Consensus 163 ~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i--~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 163 GFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKI--Q-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp GSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCC--C-CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred CCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcC--C-ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 112223222 4667777777765 2 233336888999999999999998 3446889
Q ss_pred CCCCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCC------CCCCCEEecCCCCCc--ccccccC
Q 022897 221 LPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLAD------LPNLKILDLRDCGMT--TIQGKIF 289 (290)
Q Consensus 221 l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~------l~~L~~L~L~~n~l~--~~~~~~f 289 (290)
+++|++|++++|.++. +..+..+++|++|++++|.++ .++...+.. .+.|+.|++++|++. ++.|..|
T Consensus 240 l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 240 LPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred CCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC-ccChhHccccccccccccccceEeecCcccccccCcccc
Confidence 9999999999999998 667899999999999999998 555544544 367899999999998 6677665
No 61
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=7.2e-22 Score=182.09 Aligned_cols=187 Identities=22% Similarity=0.218 Sum_probs=164.0
Q ss_pred CCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch-hhccCCCCCCEEEccCCCCCCCcchh
Q 022897 89 MSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL-PYLNTLTSLTTLILYSNSIEGSGTMQ 167 (290)
Q Consensus 89 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~ 167 (290)
+..+..+++|++|++++|.+.+.. . .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+ .
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~~~-~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~ 442 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAIIMS-A----NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD-G 442 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEEEC-C----CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT-T
T ss_pred hhhhccCCcccEeECCCCccccch-h----hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch-h
Confidence 345678899999999999988754 3 78899999999999999988777 678899999999999999987544 4
Q ss_pred hcccCCCCCeeeCCCCCCCCCCc-cchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--cccccc
Q 022897 168 GLANLRYLQVLDLSWNENITSGS-LTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAK 242 (290)
Q Consensus 168 ~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~ 242 (290)
.+..+++|++|++++|.+ .+. ++. .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++ +..+..
T Consensus 443 ~~~~l~~L~~L~l~~n~l--~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 519 (606)
T 3vq2_A 443 IFLGLTSLNTLKMAGNSF--KDNTLSN-VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519 (606)
T ss_dssp TTTTCTTCCEEECTTCEE--GGGEECS-CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred hhcCCCCCCEEECCCCcC--CCcchHH-hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC
Confidence 788999999999999997 543 444 7889999999999999998 67789999999999999999999 678999
Q ss_pred CCCCCEEeCCCCCCCCcccccccCCCC-CCCEEecCCCCCccccc
Q 022897 243 LKNLEALDLSWNNINGSLESQGLADLP-NLKILDLRDCGMTTIQG 286 (290)
Q Consensus 243 ~~~L~~L~l~~n~l~~~i~~~~l~~l~-~L~~L~L~~n~l~~~~~ 286 (290)
+++|++|++++|.++ .+|.. +..++ +|++|++++|++....+
T Consensus 520 l~~L~~L~l~~N~l~-~~p~~-~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 520 LYSLSTLDCSFNRIE-TSKGI-LQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CTTCCEEECTTSCCC-CEESC-GGGSCTTCCEEECCSCCCCCSST
T ss_pred CCcCCEEECCCCcCc-ccCHh-HhhhcccCcEEEccCCCcccCCc
Confidence 999999999999999 78888 77887 69999999999987544
No 62
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=1e-20 Score=162.68 Aligned_cols=181 Identities=27% Similarity=0.305 Sum_probs=117.3
Q ss_pred CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch--------------------hhccCCCCCC
Q 022897 92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL--------------------PYLNTLTSLT 151 (290)
Q Consensus 92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--------------------~~l~~l~~L~ 151 (290)
+..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~ 202 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLS-----PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLH 202 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCG-----GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCC
T ss_pred hccCCceeEEECCCCCCccccc-----chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccc
Confidence 5556666666666664333322 24445555555555554443222 0134444444
Q ss_pred EEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccC
Q 022897 152 TLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRD 231 (290)
Q Consensus 152 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 231 (290)
+|++++|.+.+.. .+..+++|++|++++|.+ ..++ .+..+++|++|++++|.++..+.+..+++|++|++++
T Consensus 203 ~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l---~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 274 (347)
T 4fmz_A 203 YFTAYVNQITDIT---PVANMTRLNSLKIGNNKI---TDLS--PLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGS 274 (347)
T ss_dssp EEECCSSCCCCCG---GGGGCTTCCEEECCSSCC---CCCG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred eeecccCCCCCCc---hhhcCCcCCEEEccCCcc---CCCc--chhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccC
Confidence 4444444444321 155667777777777765 2233 2667778888888888777556677888888888888
Q ss_pred CCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897 232 CGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG 286 (290)
Q Consensus 232 n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~ 286 (290)
|.+++.+.+..+++|+.|++++|.+++..+.. +..+++|++|++++|++++.+|
T Consensus 275 n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 275 NQISDISVLNNLSQLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp SCCCCCGGGGGCTTCSEEECCSSCCCGGGHHH-HHTCTTCSEEECCSSSCCCCGG
T ss_pred CccCCChhhcCCCCCCEEECcCCcCCCcChhH-hhccccCCEEEccCCccccccC
Confidence 88888777888888888888888888555554 7788888888888888888776
No 63
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=3.6e-22 Score=189.39 Aligned_cols=189 Identities=15% Similarity=0.186 Sum_probs=157.6
Q ss_pred CCcCCCCCCCcEEECCCCcccC-----------------ccchhhhhhcC--CCCCCcEEECCCCcCCCCchhhccCCCC
Q 022897 89 MSLFHPFEELQSLNLSDNWFRG-----------------FYENKAYDSFG--SLKQLKILDLGCNFFNDSILPYLNTLTS 149 (290)
Q Consensus 89 ~~~~~~~~~L~~L~l~~n~l~~-----------------~~~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 149 (290)
+..++++++|+.|+|++|.+++ .+|. .++ .+++|++|+|++|.+.+.+|..+.++++
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~----~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE----ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh----hhhhccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence 4568899999999999999998 2444 666 9999999999999999999999999999
Q ss_pred CCEEEccCCC-CCC-Ccchhhccc-------CCCCCeeeCCCCCCCCCCccch-hhhccCCCccEEEcCCCCCC-CCcCC
Q 022897 150 LTTLILYSNS-IEG-SGTMQGLAN-------LRYLQVLDLSWNENITSGSLTR-LGLANLTNLKELDLRGCGIT-TSQGL 218 (290)
Q Consensus 150 L~~L~l~~n~-~~~-~~~~~~~~~-------l~~L~~L~l~~n~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~-~~~~~ 218 (290)
|++|++++|. +++ .+| ..+.. +++|++|++++|.+ . .+|. ..+..+++|++|++++|.++ +| .+
T Consensus 517 L~~L~Ls~N~~lsg~~iP-~~i~~L~~~~~~l~~L~~L~Ls~N~L--~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~ 591 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLK-ADWTRLADDEDTGPKIQIFYMGYNNL--E-EFPASASLQKMVKLGLLDCVHNKVRHLE-AF 591 (876)
T ss_dssp CCEEECTTCTTSCHHHHH-HHHHHHHHCTTTTTTCCEEECCSSCC--C-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CC
T ss_pred CCEEECcCCCCcccccch-HHHHhhhhcccccCCccEEEeeCCcC--C-ccCChhhhhcCCCCCEEECCCCCcccch-hh
Confidence 9999999998 876 444 34444 45999999999997 3 6664 36889999999999999998 55 88
Q ss_pred CCCCCCcEEEccCCCCCC-ccccccCCC-CCEEeCCCCCCCCcccccccCCCC--CCCEEecCCCCCccccccc
Q 022897 219 ADLPNLKTLDLRDCGITT-IQGLAKLKN-LEALDLSWNNINGSLESQGLADLP--NLKILDLRDCGMTTIQGKI 288 (290)
Q Consensus 219 ~~l~~L~~L~l~~n~l~~-~~~l~~~~~-L~~L~l~~n~l~~~i~~~~l~~l~--~L~~L~L~~n~l~~~~~~~ 288 (290)
..+++|++|++++|.++. +..+..+++ |+.|++++|.++ .+|.. +..++ +|+.|+|++|++++.+|..
T Consensus 592 ~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSC-CCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchh-hhccccCCCCEEECcCCcCCCccccc
Confidence 899999999999999988 667888888 999999999998 78865 65554 4888888888888877643
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=6.5e-22 Score=177.68 Aligned_cols=185 Identities=20% Similarity=0.216 Sum_probs=143.4
Q ss_pred CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchh----
Q 022897 92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQ---- 167 (290)
Q Consensus 92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~---- 167 (290)
...+++|++|++++|.+.+..+. .|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+..
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~ 103 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIET 103 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGG----GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCE
T ss_pred cccCCCccEEEeeCCcCCCCCHH----HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCE
Confidence 34566899999999999998776 88999999999999999986554 788899999988888775421110
Q ss_pred -----------hcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCC-CCCCCcEEEccCCC
Q 022897 168 -----------GLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLA-DLPNLKTLDLRDCG 233 (290)
Q Consensus 168 -----------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~-~l~~L~~L~l~~n~ 233 (290)
....+++|+.|++++|.+ .+..+. .+..+++|++|++++|.++ .+..+. .+++|++|++++|.
T Consensus 104 L~L~~N~l~~~~~~~l~~L~~L~L~~N~l--~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCSRGQGKKNIYLANNKI--TMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEECCCSSCEEEECCSSCC--CSGGGB-CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCccccCCCCEEECCCCCC--CCCCch-hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 112346677777777775 333333 6778888999999998887 455554 68889999999999
Q ss_pred CCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccc
Q 022897 234 ITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGK 287 (290)
Q Consensus 234 l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~ 287 (290)
+++.+....+++|+.|+|++|.++ .+|+. +..+++|+.|+|++|.++++++.
T Consensus 181 l~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~ 232 (487)
T 3oja_A 181 IYDVKGQVVFAKLKTLDLSSNKLA-FMGPE-FQSAAGVTWISLRNNKLVLIEKA 232 (487)
T ss_dssp CCEEECCCCCTTCCEEECCSSCCC-EECGG-GGGGTTCSEEECTTSCCCEECTT
T ss_pred cccccccccCCCCCEEECCCCCCC-CCCHh-HcCCCCccEEEecCCcCcccchh
Confidence 888666667889999999999998 46666 77889999999999999986554
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=178.64 Aligned_cols=186 Identities=21% Similarity=0.208 Sum_probs=155.3
Q ss_pred CCCCCCcEEECCCCcccCcc--chhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897 93 HPFEELQSLNLSDNWFRGFY--ENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA 170 (290)
Q Consensus 93 ~~~~~L~~L~l~~n~l~~~~--~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 170 (290)
..+++|++|++++|.+.+.. +. .+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+...+.
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQ----SDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEH----HHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred ccCCCCCEEeCcCCccCccccccc----cccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhh
Confidence 56788999999998887653 33 67788999999999998875444 4888999999999999988765545688
Q ss_pred cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCC--ccccccCCC
Q 022897 171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKN 245 (290)
Q Consensus 171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~ 245 (290)
.+++|++|++++|.+ .+..+. .+..+++|++|++++|.++ .|..+..+++|++|++++|.+++ +..+..+++
T Consensus 419 ~l~~L~~L~l~~n~l--~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 419 SLRNLIYLDISHTHT--RVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TCTTCCEEECTTSCC--EECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEeCcCCcc--cccchh-hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 899999999999986 444444 7888999999999999886 67888999999999999999998 567889999
Q ss_pred CCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccc
Q 022897 246 LEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGK 287 (290)
Q Consensus 246 L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~ 287 (290)
|++|++++|.+++. ++..+..+++|++|++++|++++..|.
T Consensus 496 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 496 LQVLNMASNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEeCCCCcCCCC-CHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999954 444488999999999999999988775
No 66
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=184.73 Aligned_cols=145 Identities=25% Similarity=0.250 Sum_probs=118.0
Q ss_pred CCCceEeccccCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCcc-chhhhhhcCCCCCCcEEE
Q 022897 52 DWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFY-ENKAYDSFGSLKQLKILD 130 (290)
Q Consensus 52 ~w~gv~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~l~~l~~L~~L~ 130 (290)
.|..|-+ ...+++.++|+++. +..+.+..+..+++|++|++++|...+.+ +. .|.++++|++|+
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~---------i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~----~f~~L~~L~~L~ 79 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNY---------IRTVTASSFPFLEQLQLLELGSQYTPLTIDKE----AFRNLPNLRILD 79 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCC---------CCEECSSSCSSCCSCSEEEECTTCCCCEECTT----TTSSCTTCCEEE
T ss_pred CCCCCCC--CCCCcCEEECCCCc---------CCccChhHCcccccCeEEeCCCCCCccccCHH----HhcCCCCCCEEE
Confidence 5666665 34578888888866 34455677899999999999999665554 44 789999999999
Q ss_pred CCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcch-hhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCC
Q 022897 131 LGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTM-QGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRG 209 (290)
Q Consensus 131 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~ 209 (290)
|++|.+.+..|..|..+++|++|++++|.+++..+. ..+..+++|++|++++|.+ .+..+...+.++++|++|++++
T Consensus 80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l--~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI--RSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC--CCCCCCGGGGTCSSCCEEEEES
T ss_pred CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcc--cccccchhHhhCCCCCEEECCC
Confidence 999999988899999999999999999999875443 2388999999999999997 4333333789999999999999
Q ss_pred CCCC
Q 022897 210 CGIT 213 (290)
Q Consensus 210 n~l~ 213 (290)
|.++
T Consensus 158 N~i~ 161 (844)
T 3j0a_A 158 NQIF 161 (844)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 9775
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.4e-20 Score=159.39 Aligned_cols=176 Identities=28% Similarity=0.358 Sum_probs=152.2
Q ss_pred CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897 92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN 171 (290)
Q Consensus 92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 171 (290)
...+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-----~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~---~~~~~ 105 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-----GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV---SAIAG 105 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-----TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC---GGGTT
T ss_pred HHHcCCcCEEEeeCCCccCc-h-----hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc---hhhcC
Confidence 34578999999999998764 2 57789999999999999986544 88999999999999999873 26889
Q ss_pred CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeC
Q 022897 172 LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDL 251 (290)
Q Consensus 172 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l 251 (290)
+++|++|++++|.+ . .++ .+..+++|++|++++|.++....+..+++|++|++++|.+++.+.+..+++|+.|++
T Consensus 106 l~~L~~L~l~~n~l--~-~~~--~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l 180 (308)
T 1h6u_A 106 LQSIKTLDLTSTQI--T-DVT--PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180 (308)
T ss_dssp CTTCCEEECTTSCC--C-CCG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred CCCCCEEECCCCCC--C-Cch--hhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEEC
Confidence 99999999999996 2 344 488999999999999999944458899999999999999999666999999999999
Q ss_pred CCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897 252 SWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG 286 (290)
Q Consensus 252 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~ 286 (290)
++|.+++ ++. +..+++|++|++++|++++.++
T Consensus 181 ~~n~l~~-~~~--l~~l~~L~~L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 181 DDNKISD-ISP--LASLPNLIEVHLKNNQISDVSP 212 (308)
T ss_dssp CSSCCCC-CGG--GGGCTTCCEEECTTSCCCBCGG
T ss_pred CCCccCc-Chh--hcCCCCCCEEEccCCccCcccc
Confidence 9999984 554 7789999999999999998875
No 68
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.86 E-value=8.8e-21 Score=159.26 Aligned_cols=176 Identities=29% Similarity=0.328 Sum_probs=142.3
Q ss_pred CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897 92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN 171 (290)
Q Consensus 92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 171 (290)
...+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ .+ .+..
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-----~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~-~l~~ 110 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-----GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--LS-SLKD 110 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-----TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--GG-GGTT
T ss_pred hhhcCcccEEEccCCCcccC-h-----hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC--Ch-hhcc
Confidence 34577889999999888765 2 46778899999999999886444 7888999999999998876 32 5888
Q ss_pred CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeC
Q 022897 172 LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDL 251 (290)
Q Consensus 172 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l 251 (290)
+++|++|++++|.+. .++ .+..+++|++|++++|.++....+..+++|++|++++|.+++...+..+++|+.|++
T Consensus 111 l~~L~~L~L~~n~i~---~~~--~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L 185 (291)
T 1h6t_A 111 LKKLKSLSLEHNGIS---DIN--GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 185 (291)
T ss_dssp CTTCCEEECTTSCCC---CCG--GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred CCCCCEEECCCCcCC---CCh--hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEEC
Confidence 899999999999862 233 577888999999999988855778888999999999999988545888899999999
Q ss_pred CCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897 252 SWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG 286 (290)
Q Consensus 252 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~ 286 (290)
++|.++ .++. +..+++|+.|++++|+++..+.
T Consensus 186 ~~N~i~-~l~~--l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 186 SKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CSSCCC-BCGG--GTTCTTCSEEEEEEEEEECCCE
T ss_pred CCCcCC-CChh--hccCCCCCEEECcCCcccCCcc
Confidence 999988 4654 7888999999999998876544
No 69
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=6.3e-20 Score=157.73 Aligned_cols=186 Identities=25% Similarity=0.359 Sum_probs=138.7
Q ss_pred CcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhc
Q 022897 90 SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGL 169 (290)
Q Consensus 90 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 169 (290)
..+..+++|++|++++|.+.+.. .+..+++|++|++++|.....++. +..+++|++|++++|.+.+.. .+
T Consensus 104 ~~~~~l~~L~~L~l~~n~i~~~~------~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~---~~ 173 (347)
T 4fmz_A 104 SALQNLTNLRELYLNEDNISDIS------PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVT---PI 173 (347)
T ss_dssp GGGTTCTTCSEEECTTSCCCCCG------GGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCG---GG
T ss_pred hHHcCCCcCCEEECcCCcccCch------hhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCch---hh
Confidence 45888999999999999998653 378899999999999976654444 788999999999999887642 26
Q ss_pred ccCCCCCeeeCCCCCCCCCCccch-----------------hhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCC
Q 022897 170 ANLRYLQVLDLSWNENITSGSLTR-----------------LGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDC 232 (290)
Q Consensus 170 ~~l~~L~~L~l~~n~~~~~~~~~~-----------------~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 232 (290)
..+++|++|++++|.+.....+.. ..+..+++|++|++++|.++....+..+++|++|++++|
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN 253 (347)
T ss_dssp GGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred ccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCC
Confidence 677888888888877532211000 015566777777777777773333777788888888888
Q ss_pred CCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccccc
Q 022897 233 GITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKI 288 (290)
Q Consensus 233 ~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 288 (290)
.+++.+.+..+++|++|++++|.+++ ++. +..+++|++|++++|++++.+|+.
T Consensus 254 ~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 254 QISDINAVKDLTKLKMLNVGSNQISD-ISV--LNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp CCCCCGGGTTCTTCCEEECCSSCCCC-CGG--GGGCTTCSEEECCSSCCCGGGHHH
T ss_pred ccCCChhHhcCCCcCEEEccCCccCC-Chh--hcCCCCCCEEECcCCcCCCcChhH
Confidence 88777777788888888888888874 432 677888888888888888777654
No 70
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=7e-20 Score=163.15 Aligned_cols=173 Identities=21% Similarity=0.198 Sum_probs=125.0
Q ss_pred CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhccc
Q 022897 92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLAN 171 (290)
Q Consensus 92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 171 (290)
++.+++|++|++++|.+++. .+..+++|++|++++|.+++. + +..+++|++|++++|.+++. .+..
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~-------~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l----~l~~ 146 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL-------DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI----DVSH 146 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC-------CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC----CCTT
T ss_pred cccCCCCCEEECcCCCCcee-------ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee----cccc
Confidence 55667777777777777654 256677777777777777652 2 66777777777777777662 2566
Q ss_pred CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeC
Q 022897 172 LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDL 251 (290)
Q Consensus 172 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l 251 (290)
+++|++|++++|.. .+.+ .+..+++|++|++++|.++..+ +..+++|++|++++|.+++. .+..+++|+.|++
T Consensus 147 l~~L~~L~l~~n~~--~~~~---~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~L 219 (457)
T 3bz5_A 147 NTQLTELDCHLNKK--ITKL---DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDC 219 (457)
T ss_dssp CTTCCEEECTTCSC--CCCC---CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEEC
T ss_pred CCcCCEEECCCCCc--cccc---ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCee-ccccCCCCCEEEC
Confidence 77777777777754 3333 3567788888888888887333 77788888888888888876 3777888888888
Q ss_pred CCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 252 SWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 252 ~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
++|.+++ +| +..+++|++|++++|++++.++..|
T Consensus 220 s~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~~~~l 253 (457)
T 3bz5_A 220 SSNKLTE-ID---VTPLTQLTYFDCSVNPLTELDVSTL 253 (457)
T ss_dssp CSSCCSC-CC---CTTCTTCSEEECCSSCCSCCCCTTC
T ss_pred cCCcccc-cC---ccccCCCCEEEeeCCcCCCcCHHHC
Confidence 8888885 55 6678888888888888888776544
No 71
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=170.13 Aligned_cols=161 Identities=24% Similarity=0.270 Sum_probs=136.5
Q ss_pred CCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCC-cchhhcccCCCCCeeeCCCCCCCCCCccchhhhccC
Q 022897 121 GSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGS-GTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANL 199 (290)
Q Consensus 121 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 199 (290)
..+++|++|++++|.+++..|..+..+++|++|++++|.+++. ..+..+..+++|++|++++|.+ .+.++...+..+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l--~~~l~~~~~~~l 398 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV--SYDEKKGDCSWT 398 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC--BCCGGGCSCCCC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC--CcccccchhccC
Confidence 6789999999999999988899999999999999999999862 1234688899999999999997 555776457888
Q ss_pred CCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEec
Q 022897 200 TNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDL 276 (290)
Q Consensus 200 ~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L 276 (290)
++|++|++++|.++ .+..+. ++|++|++++|.++. +..+..+++|++|++++|.++ .+|...+..+++|++|++
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEEC
Confidence 99999999999986 444443 799999999999998 666779999999999999999 687766888999999999
Q ss_pred CCCCCccccc
Q 022897 277 RDCGMTTIQG 286 (290)
Q Consensus 277 ~~n~l~~~~~ 286 (290)
++|++++..+
T Consensus 476 ~~N~~~c~c~ 485 (520)
T 2z7x_B 476 HTNPWDCSCP 485 (520)
T ss_dssp CSSCBCCCHH
T ss_pred cCCCCcccCC
Confidence 9999987543
No 72
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=5.5e-20 Score=164.41 Aligned_cols=173 Identities=29% Similarity=0.355 Sum_probs=108.8
Q ss_pred CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCC
Q 022897 94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLR 173 (290)
Q Consensus 94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 173 (290)
.+++|++|++++|.+.+. . .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++.. .+..++
T Consensus 219 ~l~~L~~L~l~~n~l~~~--~----~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~l~ 287 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKDI--G----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS---PLAGLT 287 (466)
T ss_dssp GCTTCCEEECCSSCCCCC--G----GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG---GGTTCT
T ss_pred ccCCCCEEECCCCCcccc--h----hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc---cccCCC
Confidence 344455555555444432 1 34556666666666666654333 556666666666666665532 255666
Q ss_pred CCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCC
Q 022897 174 YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSW 253 (290)
Q Consensus 174 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~ 253 (290)
+|++|++++|.+ . .++ .+..+++|++|++++|.++....+..+++|++|++++|.+++.+.+..+++|+.|++++
T Consensus 288 ~L~~L~L~~n~l--~-~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 288 ALTNLELNENQL--E-DIS--PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGH 362 (466)
T ss_dssp TCSEEECCSSCC--S-CCG--GGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred ccCeEEcCCCcc--c-Cch--hhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCC
Confidence 777777777664 2 233 25667777777777777763333666777777777777777766677777777777777
Q ss_pred CCCCCcccccccCCCCCCCEEecCCCCCcccc
Q 022897 254 NNINGSLESQGLADLPNLKILDLRDCGMTTIQ 285 (290)
Q Consensus 254 n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~ 285 (290)
|.+++..| +..+++|++|++++|++++.+
T Consensus 363 n~l~~~~~---~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 363 NQISDLTP---LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp SCCCBCGG---GTTCTTCCEEECCCEEEECCC
T ss_pred CccCccch---hhcCCCCCEEeccCCcccCCc
Confidence 77775444 566777777777777777743
No 73
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=9.3e-21 Score=172.19 Aligned_cols=193 Identities=18% Similarity=0.155 Sum_probs=153.7
Q ss_pred CCCce-EeccccCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEE
Q 022897 52 DWEGV-KCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILD 130 (290)
Q Consensus 52 ~w~gv-~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~ 130 (290)
.|.++ .|. ..+++.++++++. + ..++... +++|++|++++|.++... ..+++|++|+
T Consensus 49 ~~~~l~~C~--~~~L~~L~Ls~n~----L-----~~lp~~l---~~~L~~L~Ls~N~l~~ip--------~~l~~L~~L~ 106 (571)
T 3cvr_A 49 AVSLLKECL--INQFSELQLNRLN----L-----SSLPDNL---PPQITVLEITQNALISLP--------ELPASLEYLD 106 (571)
T ss_dssp HHHHHHHHH--HTTCSEEECCSSC----C-----SCCCSCC---CTTCSEEECCSSCCSCCC--------CCCTTCCEEE
T ss_pred hhhhccccc--cCCccEEEeCCCC----C-----CccCHhH---cCCCCEEECcCCCCcccc--------cccCCCCEEE
Confidence 48888 785 3478889999876 2 2233322 378999999999998543 2468999999
Q ss_pred CCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCC
Q 022897 131 LGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGC 210 (290)
Q Consensus 131 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n 210 (290)
+++|.+++ +|. +.. +|++|++++|.+++ ++. .+++|++|++++|.+ . .+|. .+++|++|++++|
T Consensus 107 Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l--~-~lp~----~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 107 ACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQL--T-MLPE----LPTSLEVLSVRNN 170 (571)
T ss_dssp CCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCC--S-CCCC----CCTTCCEEECCSS
T ss_pred ccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCcc--C-cCCC----cCCCcCEEECCCC
Confidence 99999987 666 654 99999999999987 332 689999999999997 3 3553 5789999999999
Q ss_pred CCC-CCcCCCCCCCCcEEEccCCCCCCccccccCCCC-------CEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCc
Q 022897 211 GIT-TSQGLADLPNLKTLDLRDCGITTIQGLAKLKNL-------EALDLSWNNINGSLESQGLADLPNLKILDLRDCGMT 282 (290)
Q Consensus 211 ~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L-------~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~ 282 (290)
.++ +|. +. ++|+.|++++|.|+..+.+.. +| +.|+|++|.++ .+|.. +..+++|+.|+|++|+++
T Consensus 171 ~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~-l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 171 QLTFLPE-LP--ESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRIT-HIPEN-ILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CCSCCCC-CC--TTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCC-CCCGG-GGGSCTTEEEECCSSSCC
T ss_pred CCCCcch-hh--CCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcce-ecCHH-HhcCCCCCEEEeeCCcCC
Confidence 998 555 55 899999999999998433543 67 99999999999 78987 556999999999999999
Q ss_pred ccccccC
Q 022897 283 TIQGKIF 289 (290)
Q Consensus 283 ~~~~~~f 289 (290)
+.+|..|
T Consensus 244 ~~~p~~l 250 (571)
T 3cvr_A 244 SRIRESL 250 (571)
T ss_dssp HHHHHHH
T ss_pred CcCHHHH
Confidence 9887654
No 74
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=1.5e-19 Score=161.55 Aligned_cols=178 Identities=27% Similarity=0.314 Sum_probs=104.7
Q ss_pred CCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch--------------------hhccCCCCCC
Q 022897 92 FHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL--------------------PYLNTLTSLT 151 (290)
Q Consensus 92 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--------------------~~l~~l~~L~ 151 (290)
+..+++|++|++++|.+.+.. .+..+++|++|++++|.+.+..+ +.+..+++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~ 246 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDIS------VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 246 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred hccCCCCCEEECcCCcCCCCh------hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCC
Confidence 556666777777766665431 34455556666665555554332 2233444444
Q ss_pred EEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccC
Q 022897 152 TLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRD 231 (290)
Q Consensus 152 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 231 (290)
+|++++|.+++.. .+..+++|++|++++|.+ . .++ .+..+++|++|++++|.++....+..+++|++|++++
T Consensus 247 ~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l--~-~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 247 DLDLANNQISNLA---PLSGLTKLTELKLGANQI--S-NIS--PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 318 (466)
T ss_dssp EEECCSSCCCCCG---GGTTCTTCSEEECCSSCC--C-CCG--GGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCS
T ss_pred EEECCCCccccch---hhhcCCCCCEEECCCCcc--C-ccc--cccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcC
Confidence 4444444444321 144455555555555553 1 222 2455666666666666666333356666777777777
Q ss_pred CCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897 232 CGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG 286 (290)
Q Consensus 232 n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~ 286 (290)
|.+++...+..+++|+.|++++|.+++ ++ . +..+++|++|++++|++++.+|
T Consensus 319 n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 319 NNISDISPVSSLTKLQRLFFYNNKVSD-VS-S-LANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp SCCSCCGGGGGCTTCCEEECCSSCCCC-CG-G-GTTCTTCCEEECCSSCCCBCGG
T ss_pred CcCCCchhhccCccCCEeECCCCccCC-ch-h-hccCCCCCEEeCCCCccCccch
Confidence 777664446667777777777777764 33 2 6778888888888888888776
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.3e-21 Score=167.51 Aligned_cols=180 Identities=23% Similarity=0.279 Sum_probs=129.8
Q ss_pred CCCCCCCcEEECCCCcccCc-cchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCC-CCCCCcchhhc
Q 022897 92 FHPFEELQSLNLSDNWFRGF-YENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSN-SIEGSGTMQGL 169 (290)
Q Consensus 92 ~~~~~~L~~L~l~~n~l~~~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~ 169 (290)
+..+++|++|++++|.+.+. .+. .+..+++|++|++++|.+++..+..+..+++|++|++++| .+++...+..+
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~ 164 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 164 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred hccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence 44678899999998887654 333 6778888999999888887777788888888999999888 56653344457
Q ss_pred ccCCCCCeeeCCCC-CCCCCCc-cchhhhccCC-CccEEEcCCCC--CC---CCcCCCCCCCCcEEEccCCC-CCC--cc
Q 022897 170 ANLRYLQVLDLSWN-ENITSGS-LTRLGLANLT-NLKELDLRGCG--IT---TSQGLADLPNLKTLDLRDCG-ITT--IQ 238 (290)
Q Consensus 170 ~~l~~L~~L~l~~n-~~~~~~~-~~~~~~~~~~-~L~~L~l~~n~--l~---~~~~~~~l~~L~~L~l~~n~-l~~--~~ 238 (290)
..+++|++|++++| .+ .+. ++. .+..++ +|++|++++|. ++ .+..+..+++|++|++++|. +++ +.
T Consensus 165 ~~~~~L~~L~l~~~~~l--~~~~~~~-~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 241 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDF--TEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 241 (336)
T ss_dssp HHCTTCCEEECCCCTTC--CHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred hcCCCCCEEcCCCCCCc--ChHHHHH-HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH
Confidence 77888888888888 65 222 343 577788 88888888884 33 34455667888888888887 554 66
Q ss_pred ccccCCCCCEEeCCCCC-CCCcccccccCCCCCCCEEecCCC
Q 022897 239 GLAKLKNLEALDLSWNN-INGSLESQGLADLPNLKILDLRDC 279 (290)
Q Consensus 239 ~l~~~~~L~~L~l~~n~-l~~~i~~~~l~~l~~L~~L~L~~n 279 (290)
.+..+++|++|++++|. +....... +..+++|++|++++|
T Consensus 242 ~l~~l~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGCTTCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred HHhCCCCCCEeeCCCCCCCCHHHHHH-HhcCCCCCEEeccCc
Confidence 77778888888888884 33221112 666777777777777
No 76
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=7.8e-21 Score=173.17 Aligned_cols=181 Identities=23% Similarity=0.252 Sum_probs=159.0
Q ss_pred CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897 96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL 175 (290)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 175 (290)
++|++|++++|.+++..+. .|..+++|++|++++|.+++..|..|..+++|++|++++|.+++. ++..+..+++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHG----DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSSCCCEECSS----TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTC
T ss_pred CCccEEECcCCccCccChh----hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCC
Confidence 6899999999999988776 789999999999999999988888899999999999999999875 44568999999
Q ss_pred CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCC-C-C-CcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEe
Q 022897 176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGI-T-T-SQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALD 250 (290)
Q Consensus 176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~-~-~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~ 250 (290)
++|++++|.+... ..+. .+..+++|++|++++|.+ . . +..+..+++|++|++++|.+++ +..+..+++|++|+
T Consensus 101 ~~L~Ls~n~l~~~-~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 101 KYLNLMGNPYQTL-GVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp CEEECTTCCCSSS-CSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred cEEECCCCccccc-chhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 9999999997321 2343 688999999999999984 4 3 4678999999999999999998 77889999999999
Q ss_pred CCCCCCCCcccccccCCCCCCCEEecCCCCCccc
Q 022897 251 LSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284 (290)
Q Consensus 251 l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~ 284 (290)
++.|.+. .+|...+..+++|++|++++|++++.
T Consensus 179 l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 179 LHLSESA-FLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp EECSBST-THHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred cccCccc-ccchhhHhhcccccEEEccCCccccc
Confidence 9999987 67776567799999999999999985
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=3.1e-21 Score=163.53 Aligned_cols=181 Identities=20% Similarity=0.209 Sum_probs=140.3
Q ss_pred CCCCcEEECCCCcccCccchhhhhhc--CCCCCCcEEECCCCcCCCCch----hhccCCCCCCEEEccCCCCCCCcchhh
Q 022897 95 FEELQSLNLSDNWFRGFYENKAYDSF--GSLKQLKILDLGCNFFNDSIL----PYLNTLTSLTTLILYSNSIEGSGTMQG 168 (290)
Q Consensus 95 ~~~L~~L~l~~n~l~~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~~~~~~~~~~ 168 (290)
+++|++|++++|.+.+..+. .+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+. ++..
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~----~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~ 164 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPP----LPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF-SCEQ 164 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCC----CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC-CTTS
T ss_pred cCceeEEEeeCCEeccchhh----hhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh-hHHH
Confidence 35699999999999887776 55 788999999999999886544 3445788999999999999764 4457
Q ss_pred cccCCCCCeeeCCCCCCCCCCccch-hhhccCCCccEEEcCCCCCCC-Cc----CCCCCCCCcEEEccCCCCCC--cccc
Q 022897 169 LANLRYLQVLDLSWNENITSGSLTR-LGLANLTNLKELDLRGCGITT-SQ----GLADLPNLKTLDLRDCGITT--IQGL 240 (290)
Q Consensus 169 ~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~-~~----~~~~l~~L~~L~l~~n~l~~--~~~l 240 (290)
+..+++|++|++++|.+.....++. ..+..+++|++|++++|.++. +. .+..+++|++|++++|.+++ |+.+
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence 8889999999999998621111222 123678899999999999872 22 24677899999999999988 4555
Q ss_pred ccC---CCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccc
Q 022897 241 AKL---KNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTI 284 (290)
Q Consensus 241 ~~~---~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~ 284 (290)
..+ ++|++|++++|.++ .+|.. +. ++|++|+|++|++++.
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~-~lp~~-~~--~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLE-QVPKG-LP--AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCC-SCCSC-CC--SCCSCEECCSCCCCSC
T ss_pred HhccCcCcCCEEECCCCCCC-chhhh-hc--CCCCEEECCCCcCCCC
Confidence 555 69999999999998 78876 43 7899999999999985
No 78
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.84 E-value=5.1e-20 Score=168.88 Aligned_cols=174 Identities=30% Similarity=0.340 Sum_probs=112.1
Q ss_pred CCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccC
Q 022897 93 HPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANL 172 (290)
Q Consensus 93 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l 172 (290)
..+++|+.|++++|.+.... .+..+++|++|+|++|.+.+..+ +..+++|+.|+|++|.+.+. + .+..+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~-~l~~l 108 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--S-SLKDL 108 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT------TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--T-TSTTC
T ss_pred hcCCCCCEEECcCCCCCCCh------HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--h-hhccC
Confidence 34566677777776665431 35566777777777777665433 66677777777777776652 2 56666
Q ss_pred CCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCC
Q 022897 173 RYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLS 252 (290)
Q Consensus 173 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~ 252 (290)
++|++|++++|.+. .++ .+..+++|+.|+|++|.++....+..+++|+.|+|++|.+++...+..+++|+.|+|+
T Consensus 109 ~~L~~L~Ls~N~l~---~l~--~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 109 KKLKSLSLEHNGIS---DIN--GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 183 (605)
T ss_dssp TTCCEEECTTSCCC---CCG--GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred CCCCEEEecCCCCC---CCc--cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECc
Confidence 77777777777652 232 4666677777777777776445566677777777777777763336667777777777
Q ss_pred CCCCCCcccccccCCCCCCCEEecCCCCCcccc
Q 022897 253 WNNINGSLESQGLADLPNLKILDLRDCGMTTIQ 285 (290)
Q Consensus 253 ~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~ 285 (290)
+|.+++ ++. +..+++|+.|+|++|++++.+
T Consensus 184 ~N~i~~-l~~--l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 184 KNHISD-LRA--LAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp SSCCCB-CGG--GTTCTTCSEEECCSEEEECCC
T ss_pred CCCCCC-ChH--HccCCCCCEEEccCCcCcCCc
Confidence 777763 432 666777777777777766654
No 79
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=5.1e-20 Score=168.36 Aligned_cols=161 Identities=25% Similarity=0.275 Sum_probs=132.3
Q ss_pred CCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCc-chhhcccCCCCCeeeCCCCCCCCCCccchhhhccC
Q 022897 121 GSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSG-TMQGLANLRYLQVLDLSWNENITSGSLTRLGLANL 199 (290)
Q Consensus 121 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 199 (290)
..+++|++|++++|.+++..|..+..+++|++|++++|.+++.. .+..+..+++|++|++++|.+ .+.++...+..+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l--~~~~~~~~~~~l 427 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL--NSHAYDRTCAWA 427 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCC--BSCCSSCCCCCC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcC--CCccChhhhcCc
Confidence 67789999999999998888888889999999999999988632 234578889999999999987 444665467788
Q ss_pred CCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEec
Q 022897 200 TNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDL 276 (290)
Q Consensus 200 ~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L 276 (290)
++|++|++++|.++ .+..+. ++|++|++++|.++. +..+..+++|++|++++|.++ .+|...+..+++|+.|++
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEEC
T ss_pred ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEe
Confidence 99999999999986 333332 689999999999988 566778999999999999998 677766888999999999
Q ss_pred CCCCCccccc
Q 022897 277 RDCGMTTIQG 286 (290)
Q Consensus 277 ~~n~l~~~~~ 286 (290)
++|++++..+
T Consensus 505 ~~N~~~c~c~ 514 (562)
T 3a79_B 505 HDNPWDCTCP 514 (562)
T ss_dssp CSCCBCCCHH
T ss_pred cCCCcCCCcc
Confidence 9999987543
No 80
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=171.90 Aligned_cols=203 Identities=24% Similarity=0.297 Sum_probs=134.2
Q ss_pred cEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhh
Q 022897 64 RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPY 143 (290)
Q Consensus 64 ~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 143 (290)
.++.++++++. +..+.+..+..+++|++|++++|.+.+..+. .|..+++|++|++++|.+++..+..
T Consensus 29 ~l~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 29 STKNLDLSFNP---------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp SCCEEECCSCC---------CCEECTTTTTTCSSCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTT
T ss_pred cccEEEccCCc---------cCccChhHhhCCCCceEEECCCCcCCccCcc----cccCchhCCEEeCcCCcCCccCHhh
Confidence 45566666655 3333445577778888888888877776555 6777788888888888777666677
Q ss_pred ccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCC-ccchhhhccCCCccEEEcCCCCCC--CCcCCCC
Q 022897 144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSG-SLTRLGLANLTNLKELDLRGCGIT--TSQGLAD 220 (290)
Q Consensus 144 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~ 220 (290)
|..+++|++|++++|.+++... ..+..+++|++|++++|.+ .+ .+|. .+..+++|++|++++|.++ .+..+..
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l--~~~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 171 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLI--QSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTT-CSCTTCTTCCEEECCSSCC--CCCCCCG-GGGGCTTCCEEECTTSCCCEECGGGGHH
T ss_pred hcCccccccccccccccccCCC-ccccccccccEEecCCCcc--ceecChh-hhcccCCCCEEeCcCCccceecHHHccc
Confidence 7777888888888877765322 2467777788888877775 32 3454 6777777777777777766 2333444
Q ss_pred CCCC----cEEEccCCCCCC------------------------------------------------------------
Q 022897 221 LPNL----KTLDLRDCGITT------------------------------------------------------------ 236 (290)
Q Consensus 221 l~~L----~~L~l~~n~l~~------------------------------------------------------------ 236 (290)
+.+| ++|++++|.+++
T Consensus 172 l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 251 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT
T ss_pred hhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhh
Confidence 4444 455555554433
Q ss_pred -----------------------ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897 237 -----------------------IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG 286 (290)
Q Consensus 237 -----------------------~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~ 286 (290)
+..+..+++|++|++++|.+. .+|.. +..+ +|++|++++|.++..+.
T Consensus 252 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~-~~~~-~L~~L~l~~n~~~~l~~ 321 (570)
T 2z63_A 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF-SYNF-GWQHLELVNCKFGQFPT 321 (570)
T ss_dssp GGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBC-CSCC-CCSEEEEESCBCSSCCB
T ss_pred ccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhh-hccC-CccEEeeccCcccccCc
Confidence 122344567788888887777 56665 5666 78888888888775544
No 81
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.1e-19 Score=145.01 Aligned_cols=172 Identities=23% Similarity=0.163 Sum_probs=140.9
Q ss_pred cEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCee
Q 022897 99 QSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVL 178 (290)
Q Consensus 99 ~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 178 (290)
+.++.+++.+..... . -.++|++|++++|.+++..+..+..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 10 ~~v~c~~~~l~~~p~-----~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 81 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT-----G--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYL 81 (208)
T ss_dssp TEEECCSSCCSSCCS-----C--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CEEEecCCCccCCCC-----C--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEE
Confidence 455666666654432 2 246899999999999977777788999999999999999854 44567899999999
Q ss_pred eCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-C-CcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCC
Q 022897 179 DLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-T-SQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWN 254 (290)
Q Consensus 179 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~-~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n 254 (290)
++++|.+ . .++...+..+++|++|++++|.++ . +..+..+++|++|++++|.+++ +..+..+++|++|++++|
T Consensus 82 ~Ls~n~l--~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 82 NLSTNQL--Q-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp ECCSSCC--C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred ECCCCcC--C-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 9999996 3 455546789999999999999998 3 4457899999999999999998 334788999999999999
Q ss_pred CCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 255 NINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 255 ~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
.+.+ .+++|++|+++.|+++|.+|+.+
T Consensus 159 ~~~~--------~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 159 PWDC--------TCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp CBCC--------CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred Ceec--------CCCCHHHHHHHHHhCCceeeccC
Confidence 7763 45789999999999999998754
No 82
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=1.2e-18 Score=155.28 Aligned_cols=188 Identities=22% Similarity=0.202 Sum_probs=157.9
Q ss_pred cCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch
Q 022897 62 TRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL 141 (290)
Q Consensus 62 ~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 141 (290)
..+++.++++++. + ..++ .+..+++|++|++++|.+++. .+..+++|++|++++|.+++. +
T Consensus 41 l~~L~~L~Ls~n~----l-----~~~~--~l~~l~~L~~L~Ls~n~l~~~-------~~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 41 LATLTSLDCHNSS----I-----TDMT--GIEKLTGLTKLICTSNNITTL-------DLSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp HTTCCEEECCSSC----C-----CCCT--TGGGCTTCSEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSCC-C
T ss_pred cCCCCEEEccCCC----c-----ccCh--hhcccCCCCEEEccCCcCCeE-------ccccCCCCCEEECcCCCCcee-e
Confidence 4567788888876 2 1221 477899999999999999875 367899999999999999874 3
Q ss_pred hhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCC
Q 022897 142 PYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADL 221 (290)
Q Consensus 142 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l 221 (290)
++.+++|++|++++|.+++. .+..+++|++|++++|.+ .+ + .+..+++|++|++++|.......+..+
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l----~~~~l~~L~~L~l~~N~l--~~-l---~l~~l~~L~~L~l~~n~~~~~~~~~~l 169 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKL----DVSQNPLLTYLNCARNTL--TE-I---DVSHNTQLTELDCHLNKKITKLDVTPQ 169 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCC----CCTTCTTCCEEECTTSCC--SC-C---CCTTCTTCCEEECTTCSCCCCCCCTTC
T ss_pred --cCCCCcCCEEECCCCcCCee----cCCCCCcCCEEECCCCcc--ce-e---ccccCCcCCEEECCCCCcccccccccC
Confidence 78999999999999999873 278899999999999997 33 3 367899999999999965533368889
Q ss_pred CCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccc
Q 022897 222 PNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ 285 (290)
Q Consensus 222 ~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~ 285 (290)
++|++|++++|.+++.+ +..+++|+.|++++|.+++ ++ ++.+++|++|++++|++++++
T Consensus 170 ~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~~ip 228 (457)
T 3bz5_A 170 TQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTEID 228 (457)
T ss_dssp TTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC
T ss_pred CcCCEEECCCCccceec-cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCcccccC
Confidence 99999999999999965 8889999999999999995 42 788999999999999999964
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=2.4e-21 Score=169.18 Aligned_cols=193 Identities=25% Similarity=0.315 Sum_probs=101.4
Q ss_pred CCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhc----cCC---------CCCCEEEccCCC
Q 022897 93 HPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL----NTL---------TSLTTLILYSNS 159 (290)
Q Consensus 93 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l----~~l---------~~L~~L~l~~n~ 159 (290)
..+++|++|++++|.+.......++..+..+++|++|+|++|.++...+..+ ..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 3455555555555555543222222244555555555555555543222222 222 556666666665
Q ss_pred CCCCcch---hhcccCCCCCeeeCCCCCCCCCC--ccchhhhccCCCccEEEcCCCCCC------CCcCCCCCCCCcEEE
Q 022897 160 IEGSGTM---QGLANLRYLQVLDLSWNENITSG--SLTRLGLANLTNLKELDLRGCGIT------TSQGLADLPNLKTLD 228 (290)
Q Consensus 160 ~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~------~~~~~~~l~~L~~L~ 228 (290)
++....+ ..+..+++|++|++++|.+...+ .+.+..+..+++|++|+|++|.++ ++..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 5422222 23445556666666666542111 011114455666666666666663 344555666666666
Q ss_pred ccCCCCCC------cccc--ccCCCCCEEeCCCCCCCC----cccccccCCCCCCCEEecCCCCCcccc
Q 022897 229 LRDCGITT------IQGL--AKLKNLEALDLSWNNING----SLESQGLADLPNLKILDLRDCGMTTIQ 285 (290)
Q Consensus 229 l~~n~l~~------~~~l--~~~~~L~~L~l~~n~l~~----~i~~~~l~~l~~L~~L~L~~n~l~~~~ 285 (290)
+++|.+++ +..+ ..+++|++|+|++|.+++ .+|......+++|++|++++|++++..
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 66666665 1233 226667777777776664 255552355667777777777776655
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=4e-21 Score=164.46 Aligned_cols=191 Identities=20% Similarity=0.218 Sum_probs=150.9
Q ss_pred CcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCC-cCCCC-chhhccCCCCCCEEEccCC-CCCCCcch
Q 022897 90 SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCN-FFNDS-ILPYLNTLTSLTTLILYSN-SIEGSGTM 166 (290)
Q Consensus 90 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~~~~~~~~ 166 (290)
..+..+++|++|++++|.+++..+. .+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++...+
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHH----HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence 3467889999999999998776655 7888999999999999 67653 6666888999999999999 88765445
Q ss_pred hhcccCC-CCCeeeCCCCCC-CCCCccchhhhccCCCccEEEcCCCC-CC--CCcCCCCCCCCcEEEccCCC-CCC--cc
Q 022897 167 QGLANLR-YLQVLDLSWNEN-ITSGSLTRLGLANLTNLKELDLRGCG-IT--TSQGLADLPNLKTLDLRDCG-ITT--IQ 238 (290)
Q Consensus 167 ~~~~~l~-~L~~L~l~~n~~-~~~~~~~~~~~~~~~~L~~L~l~~n~-l~--~~~~~~~l~~L~~L~l~~n~-l~~--~~ 238 (290)
..+..++ +|++|++++|.+ ...+.++. .+..+++|++|++++|. ++ .+..+..+++|++|++++|. +.. ..
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 266 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 266 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH
Confidence 5788899 999999999952 11144555 67889999999999999 55 56678889999999999995 333 34
Q ss_pred ccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 239 GLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 239 ~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
.+..+++|+.|++++| ++...-.. +. ..+..|++++|++++..|..+
T Consensus 267 ~l~~~~~L~~L~l~~~-i~~~~~~~-l~--~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI-VPDGTLQL-LK--EALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp GGGGCTTCCEEECTTS-SCTTCHHH-HH--HHSTTSEESCCCSCCTTCSSC
T ss_pred HHhcCCCCCEEeccCc-cCHHHHHH-HH--hhCcceEEecccCccccCCcc
Confidence 6888999999999999 54322222 21 346677899999999988764
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.3e-19 Score=156.19 Aligned_cols=224 Identities=21% Similarity=0.197 Sum_probs=133.9
Q ss_pred CCCC-C-CCCCCceEeccccCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCC
Q 022897 45 MPSD-C-CDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGS 122 (290)
Q Consensus 45 ~~~~-~-c~~w~gv~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~ 122 (290)
|+.. | | .|..|.|......-++-++........+....+..++...|..+++|++|+|++|.+.+.++.. .|.+
T Consensus 2 Cp~~~C~C-~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~ 77 (350)
T 4ay9_X 2 CHHRICHC-SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSN 77 (350)
T ss_dssp CCCSSSEE-ETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT---SBCS
T ss_pred CCCCccEe-eCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh---Hhhc
Confidence 5543 5 6 8999999643211111122111111112223355566666777888888888888776554431 5667
Q ss_pred CCCCcE-EECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCC-
Q 022897 123 LKQLKI-LDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLT- 200 (290)
Q Consensus 123 l~~L~~-L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~- 200 (290)
++++++ +.+.+|.+....|..|..+++|++|++++|.+..... ..+....++..+++.++.. ...++...+..+.
T Consensus 78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~l~~l~l~~~~~--i~~l~~~~f~~~~~ 154 (350)
T 4ay9_X 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNIN--IHTIERNSFVGLSF 154 (350)
T ss_dssp CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC-CTTCCBSSCEEEEEESCTT--CCEECTTSSTTSBS
T ss_pred chhhhhhhcccCCcccccCchhhhhccccccccccccccccCCc-hhhcccchhhhhhhccccc--cccccccchhhcch
Confidence 777665 4455677776666777778888888888887765432 2344455666777755433 4445543445543
Q ss_pred CccEEEcCCCCCC-CCcCCCCCCCCcEEEccC-CCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEec
Q 022897 201 NLKELDLRGCGIT-TSQGLADLPNLKTLDLRD-CGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDL 276 (290)
Q Consensus 201 ~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~-n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L 276 (290)
.++.|++++|+++ ++.......+|++|++++ |.++. ...+..+++|++|++++|.++ .+|... +.+|+.|.+
T Consensus 155 ~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~---~~~L~~L~~ 230 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG---LENLKKLRA 230 (350)
T ss_dssp SCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS---CTTCCEEEC
T ss_pred hhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhh---hccchHhhh
Confidence 5777788888777 555555566777777764 55655 234677777888888888777 566543 344445554
Q ss_pred CCC
Q 022897 277 RDC 279 (290)
Q Consensus 277 ~~n 279 (290)
.++
T Consensus 231 l~~ 233 (350)
T 4ay9_X 231 RST 233 (350)
T ss_dssp TTC
T ss_pred ccC
Confidence 433
No 86
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.82 E-value=3.4e-20 Score=153.40 Aligned_cols=171 Identities=23% Similarity=0.256 Sum_probs=101.1
Q ss_pred CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897 96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL 175 (290)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 175 (290)
.++..+++.++.++... .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|
T Consensus 19 ~~l~~l~l~~~~i~~~~------~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L 87 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV------SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP---LKDLTKL 87 (263)
T ss_dssp HHHHHHHHTCSCTTSEE------CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG---GTTCSSC
T ss_pred HHHHHHHhcCCCccccc------chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh---hccCCCC
Confidence 34455555555555432 23445666666666666653 33 45566666666666666655321 5666666
Q ss_pred CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCC
Q 022897 176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN 255 (290)
Q Consensus 176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~ 255 (290)
++|++++|.+. .++. +.. ++|++|++++|.++..+.+..+++|++|++++|.+++.+.+..+++|+.|++++|.
T Consensus 88 ~~L~L~~N~l~---~l~~--~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 88 EELSVNRNRLK---NLNG--IPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp CEEECCSSCCS---CCTT--CCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSC
T ss_pred CEEECCCCccC---CcCc--ccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCc
Confidence 66666666642 2332 122 66666666666666444566666677777777766665566666667777777776
Q ss_pred CCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897 256 INGSLESQGLADLPNLKILDLRDCGMTTIQG 286 (290)
Q Consensus 256 l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~ 286 (290)
+++. .. +..+++|+.|++++|++++.+.
T Consensus 162 i~~~--~~-l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 162 ITNT--GG-LTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp CCBC--TT-STTCCCCCEEEEEEEEEECCCE
T ss_pred Ccch--HH-hccCCCCCEEeCCCCcccCCcc
Confidence 6633 22 6666667777777766665543
No 87
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=1e-18 Score=141.58 Aligned_cols=157 Identities=25% Similarity=0.234 Sum_probs=126.3
Q ss_pred CCCCCCCCCceEeccccCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCC
Q 022897 46 PSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQ 125 (290)
Q Consensus 46 ~~~~c~~w~gv~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~ 125 (290)
....| +|.+|.|.... ++ .++.. -.++|++|++++|.+.+..+. .|..+++
T Consensus 15 ~~~~C-s~~~v~c~~~~--l~-------------------~ip~~---~~~~L~~L~Ls~n~i~~~~~~----~~~~l~~ 65 (229)
T 3e6j_A 15 SQCSC-SGTTVDCRSKR--HA-------------------SVPAG---IPTNAQILYLHDNQITKLEPG----VFDSLIN 65 (229)
T ss_dssp TTCEE-ETTEEECTTSC--CS-------------------SCCSC---CCTTCSEEECCSSCCCCCCTT----TTTTCTT
T ss_pred CCCEE-eCCEeEccCCC--cC-------------------ccCCC---CCCCCCEEEcCCCccCccCHH----HhhCccC
Confidence 56678 99999996421 11 11111 127899999999999988776 7889999
Q ss_pred CcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEE
Q 022897 126 LKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKEL 205 (290)
Q Consensus 126 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L 205 (290)
|++|++++|.+....+..|..+++|++|++++|.+++. ++..+..+++|++|++++|.+ ..+|. .+..+++|++|
T Consensus 66 L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~l---~~lp~-~~~~l~~L~~L 140 (229)
T 3e6j_A 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKELFMCCNKL---TELPR-GIERLTHLTHL 140 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC---CSCCT-TGGGCTTCSEE
T ss_pred CcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeEeccCCcc---cccCc-ccccCCCCCEE
Confidence 99999999999876667788999999999999999864 445678899999999999996 36666 67889999999
Q ss_pred EcCCCCCC-C-CcCCCCCCCCcEEEccCCCCCC
Q 022897 206 DLRGCGIT-T-SQGLADLPNLKTLDLRDCGITT 236 (290)
Q Consensus 206 ~l~~n~l~-~-~~~~~~l~~L~~L~l~~n~l~~ 236 (290)
++++|.++ . +..+..+++|+.|++++|.+..
T Consensus 141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 99999988 3 3567888899999999998875
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=6.6e-21 Score=166.33 Aligned_cols=214 Identities=21% Similarity=0.217 Sum_probs=162.2
Q ss_pred CcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcc---cCccch---hhhhhcCCCCCCcEEECCCCcC
Q 022897 63 RRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWF---RGFYEN---KAYDSFGSLKQLKILDLGCNFF 136 (290)
Q Consensus 63 ~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l---~~~~~~---~~~~~l~~l~~L~~L~l~~n~l 136 (290)
..++.++++++. +...+...+ ...+..+++|++|++++|.+ .+.+|. .+...+..+++|++|+|++|.+
T Consensus 32 ~~L~~L~L~~n~----i~~~~~~~l-~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 32 DSVKEIVLSGNT----IGTEAARWL-SENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp SCCCEEECTTSE----ECHHHHHHH-HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred CCccEEECCCCC----CCHHHHHHH-HHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 457788888876 322222222 13466789999999999644 333333 2334568899999999999999
Q ss_pred CC----CchhhccCCCCCCEEEccCCCCCCCcc---hhhcccC---------CCCCeeeCCCCCCCCCCccch--hhhcc
Q 022897 137 ND----SILPYLNTLTSLTTLILYSNSIEGSGT---MQGLANL---------RYLQVLDLSWNENITSGSLTR--LGLAN 198 (290)
Q Consensus 137 ~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~~l---------~~L~~L~l~~n~~~~~~~~~~--~~~~~ 198 (290)
.. .++..+..+++|++|++++|.+++..+ ...+..+ ++|++|++++|.+.. ..++. ..+..
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~ 185 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-GSMKEWAKTFQS 185 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-GGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-HHHHHHHHHHHh
Confidence 87 467788899999999999999864322 1223334 899999999999721 33442 26778
Q ss_pred CCCccEEEcCCCCCC------CCc-CCCCCCCCcEEEccCCCCCC------ccccccCCCCCEEeCCCCCCCCc----cc
Q 022897 199 LTNLKELDLRGCGIT------TSQ-GLADLPNLKTLDLRDCGITT------IQGLAKLKNLEALDLSWNNINGS----LE 261 (290)
Q Consensus 199 ~~~L~~L~l~~n~l~------~~~-~~~~l~~L~~L~l~~n~l~~------~~~l~~~~~L~~L~l~~n~l~~~----i~ 261 (290)
+++|++|++++|.++ ..+ .+..+++|++|++++|.++. +..+..+++|++|+|++|.+++. ++
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 899999999999988 233 78899999999999999963 56788999999999999999854 34
Q ss_pred cccc--CCCCCCCEEecCCCCCcc
Q 022897 262 SQGL--ADLPNLKILDLRDCGMTT 283 (290)
Q Consensus 262 ~~~l--~~l~~L~~L~L~~n~l~~ 283 (290)
.. + +.+++|++|+|++|++++
T Consensus 266 ~~-l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 266 DA-FSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HH-HHTCSSCCCCEEECCSSCCBH
T ss_pred HH-HhhccCCCeEEEECcCCcCCH
Confidence 44 5 448999999999999998
No 89
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=6.6e-20 Score=155.82 Aligned_cols=186 Identities=22% Similarity=0.256 Sum_probs=142.5
Q ss_pred CcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchh--
Q 022897 90 SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQ-- 167 (290)
Q Consensus 90 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-- 167 (290)
..+..+++|++|++++|.+.+..+. .|..+++|++|++++|.+++..+ +..+++|++|++++|.+++.....
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L 101 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSI 101 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHH----HHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTC
T ss_pred HHhccCCCCCEEECcCCccCcCCHH----HhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCc
Confidence 4455678999999999999988776 88999999999999999986544 889999999999999876421110
Q ss_pred -------------hcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCC-CCCCCCcEEEccC
Q 022897 168 -------------GLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGL-ADLPNLKTLDLRD 231 (290)
Q Consensus 168 -------------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~-~~l~~L~~L~l~~ 231 (290)
....+++|++|++++|.+ . .++...+..+++|++|++++|.++ .+..+ ..+++|++|++++
T Consensus 102 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l--~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 102 ETLHAANNNISRVSCSRGQGKKNIYLANNKI--T-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp CEEECCSSCCSEEEECCCSSCEEEECCSSCC--C-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CEEECCCCccCCcCccccCCCCEEECCCCCC--C-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 112345677777777775 2 333336677888888888888887 33444 4678888888888
Q ss_pred CCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCccccc
Q 022897 232 CGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQG 286 (290)
Q Consensus 232 n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~ 286 (290)
|.+++.+....+++|++|++++|.++ .+|.. +..+++|++|+|++|+++++++
T Consensus 179 N~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~-~~~l~~L~~L~L~~N~l~~l~~ 231 (317)
T 3o53_A 179 NFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPE-FQSAAGVTWISLRNNKLVLIEK 231 (317)
T ss_dssp SCCCEEECCCCCTTCCEEECCSSCCC-EECGG-GGGGTTCSEEECTTSCCCEECT
T ss_pred CcCcccccccccccCCEEECCCCcCC-cchhh-hcccCcccEEECcCCcccchhh
Confidence 88888655566888999999999988 56666 7788999999999999987654
No 90
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=1e-18 Score=140.72 Aligned_cols=133 Identities=24% Similarity=0.293 Sum_probs=112.4
Q ss_pred CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897 96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL 175 (290)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 175 (290)
++|++|++++|.+.+..+. .|..+++|++|++++|.+++..|..|..+++|++|+|++|.++. ++...+..+++|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~----~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSCCCEECTT----SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred cCCCEEECCCCcCCCcCHh----HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCCCCC
Confidence 5799999999999887766 78899999999999999998888899999999999999999985 354567889999
Q ss_pred CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC
Q 022897 176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT 236 (290)
Q Consensus 176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~ 236 (290)
++|++++|.+ . .++...+..+++|++|+|++|.++ .+..+..+++|++|++++|.+..
T Consensus 107 ~~L~L~~N~l--~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 107 QLLLLNANKI--N-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CEEECCSSCC--C-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEEECCCCCC--C-EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9999999986 3 343337888899999999999988 34457888899999999998765
No 91
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=140.53 Aligned_cols=153 Identities=22% Similarity=0.189 Sum_probs=117.5
Q ss_pred CcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch-hhccCCCCCCEEEccCCCCCCCcchhhcccCCCCC
Q 022897 98 LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL-PYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ 176 (290)
Q Consensus 98 L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 176 (290)
-+.+++++|.++..+. .+ ...+++|++++|.+++..+ ..|..+++|++|++++|.+++. ++..+..+++|+
T Consensus 13 ~~~l~~s~n~l~~iP~-----~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~ 84 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE-----HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVN 84 (220)
T ss_dssp TTEEECCSSCCSSCCS-----CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCC
T ss_pred CCEeEeCCCCcccCcc-----CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCC
Confidence 3588999988876533 23 2456899999998886544 3477889999999999988754 334788888999
Q ss_pred eeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCC
Q 022897 177 VLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLS 252 (290)
Q Consensus 177 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~ 252 (290)
+|++++|.+ . .++...+..+++|++|++++|.++ .+..+..+++|++|++++|.+++ +..+..+++|+.|+++
T Consensus 85 ~L~Ls~N~l--~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 85 EILLTSNRL--E-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp EEECCSSCC--C-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred EEECCCCcc--C-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 999998886 3 344446788888899999988888 46778888888888888888887 5567888888888888
Q ss_pred CCCCCCccc
Q 022897 253 WNNINGSLE 261 (290)
Q Consensus 253 ~n~l~~~i~ 261 (290)
+|.+.+..+
T Consensus 162 ~N~l~c~c~ 170 (220)
T 2v70_A 162 ANPFNCNCY 170 (220)
T ss_dssp SCCEECSGG
T ss_pred CcCCcCCCc
Confidence 888876544
No 92
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=3.4e-18 Score=138.50 Aligned_cols=153 Identities=22% Similarity=0.187 Sum_probs=109.1
Q ss_pred CCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCC
Q 022897 97 ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ 176 (290)
Q Consensus 97 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 176 (290)
..+.++.+++.+...+. .+ .++|++|++++|.+++..+..|..+++|++|++++|.++. ++...+..+++|+
T Consensus 20 s~~~v~c~~~~l~~ip~-----~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~ 91 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPA-----GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLT 91 (229)
T ss_dssp ETTEEECTTSCCSSCCS-----CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred eCCEeEccCCCcCccCC-----CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcC
Confidence 45678888877765543 22 3778888888888887777778888888888888888854 3444567778888
Q ss_pred eeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCC
Q 022897 177 VLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSW 253 (290)
Q Consensus 177 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~ 253 (290)
+|++++|.+ ..++...+..+++|++|++++|.++ +|..+..+++|++|++++|.++. +..+..+++|+.|++++
T Consensus 92 ~L~Ls~N~l---~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 92 VLDLGTNQL---TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp EEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred EEECCCCcC---CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 888888875 2344435677777888888877777 66666777777777777777776 23466677777777777
Q ss_pred CCCCCcc
Q 022897 254 NNINGSL 260 (290)
Q Consensus 254 n~l~~~i 260 (290)
|.+.+..
T Consensus 169 N~~~c~c 175 (229)
T 3e6j_A 169 NPWDCEC 175 (229)
T ss_dssp SCBCTTB
T ss_pred CCccCCc
Confidence 7776543
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=2.8e-19 Score=141.48 Aligned_cols=151 Identities=19% Similarity=0.285 Sum_probs=94.8
Q ss_pred CCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCC
Q 022897 122 SLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTN 201 (290)
Q Consensus 122 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 201 (290)
.+++|++|++++|.+. .++ .+..+++|++|++++|.++. + ..+..+++|++|++++|.+ .+..+. .+..+++
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~-~~l~~l~~L~~L~l~~n~l--~~~~~~-~l~~l~~ 113 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--Y-NPISGLSNLERLRIMGKDV--TSDKIP-NLSGLTS 113 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--C-GGGTTCTTCCEEEEECTTC--BGGGSC-CCTTCTT
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--c-hhhhcCCCCCEEEeECCcc--CcccCh-hhcCCCC
Confidence 3455666666666665 333 45566666666666665543 2 2455666666777666665 322333 4566667
Q ss_pred ccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCC-CCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCC
Q 022897 202 LKELDLRGCGIT--TSQGLADLPNLKTLDLRDCG-ITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD 278 (290)
Q Consensus 202 L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~ 278 (290)
|++|++++|.++ .+..+..+++|++|++++|. ++..+.+..+++|++|++++|.+++ ++ . +..+++|++|++++
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~-l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-G-IEDFPKLNQLYAFS 190 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-T-GGGCSSCCEEEECB
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-H-hccCCCCCEEEeeC
Confidence 777777777666 35556667777777777776 6665567777788888888887773 44 2 66777888888888
Q ss_pred CCCcc
Q 022897 279 CGMTT 283 (290)
Q Consensus 279 n~l~~ 283 (290)
|++.+
T Consensus 191 N~i~~ 195 (197)
T 4ezg_A 191 QTIGG 195 (197)
T ss_dssp C----
T ss_pred cccCC
Confidence 87754
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=2.5e-20 Score=161.36 Aligned_cols=217 Identities=21% Similarity=0.217 Sum_probs=142.1
Q ss_pred cEEeecccccccccccccccccccCCCcCCCCC-CCcEEECCCCcccCccchhhhhhcCCC-CCCcEEECCCCcCCCCch
Q 022897 64 RVMQLSLTYTERLNYYDRTSASLLNMSLFHPFE-ELQSLNLSDNWFRGFYENKAYDSFGSL-KQLKILDLGCNFFNDSIL 141 (290)
Q Consensus 64 ~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~ 141 (290)
.++.++++++. +...+...+ ...+..++ +|++|++++|.+++..+..+...+... ++|++|++++|.+++..+
T Consensus 23 ~L~~L~Ls~n~----l~~~~~~~l-~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 23 GVTSLDLSLNN----LYSISTVEL-IQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TCCEEECTTSC----GGGSCHHHH-HHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CceEEEccCCC----CChHHHHHH-HHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 47777887776 221111111 03455666 788888888888877666444444444 888888888888877666
Q ss_pred hhcc----CC-CCCCEEEccCCCCCCCcchh---hccc-CCCCCeeeCCCCCCCCCC--ccchhhhccCC-CccEEEcCC
Q 022897 142 PYLN----TL-TSLTTLILYSNSIEGSGTMQ---GLAN-LRYLQVLDLSWNENITSG--SLTRLGLANLT-NLKELDLRG 209 (290)
Q Consensus 142 ~~l~----~l-~~L~~L~l~~n~~~~~~~~~---~~~~-l~~L~~L~l~~n~~~~~~--~~~~~~~~~~~-~L~~L~l~~ 209 (290)
..+. .+ ++|++|++++|.+++..... .+.. .++|++|++++|.+...+ .++. .+...+ +|++|++++
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ-ILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH-HHHTSCTTCCEEECTT
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH-HHhcCCccccEeeecC
Confidence 5443 34 78888888888887654321 1333 358888888888863322 2222 345554 888888888
Q ss_pred CCCC--CC----cCCCCC-CCCcEEEccCCCCCC------cccccc-CCCCCEEeCCCCCCCCccc---ccccCCCCCCC
Q 022897 210 CGIT--TS----QGLADL-PNLKTLDLRDCGITT------IQGLAK-LKNLEALDLSWNNINGSLE---SQGLADLPNLK 272 (290)
Q Consensus 210 n~l~--~~----~~~~~l-~~L~~L~l~~n~l~~------~~~l~~-~~~L~~L~l~~n~l~~~i~---~~~l~~l~~L~ 272 (290)
|.++ .+ ..+..+ ++|++|++++|.+++ +..+.. .++|++|++++|.+++..+ ...+..+++|+
T Consensus 177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~ 256 (362)
T 3goz_A 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCS
T ss_pred CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCcc
Confidence 8886 22 233445 588889998888877 334444 3588899998888885433 12356778888
Q ss_pred EEecCCCCCccccc
Q 022897 273 ILDLRDCGMTTIQG 286 (290)
Q Consensus 273 ~L~L~~n~l~~~~~ 286 (290)
+|+|++|.+.++.+
T Consensus 257 ~L~L~~n~l~~i~~ 270 (362)
T 3goz_A 257 TVYLDYDIVKNMSK 270 (362)
T ss_dssp EEEEEHHHHTTCCH
T ss_pred EEEeccCCccccCH
Confidence 99988888655443
No 95
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=1.7e-18 Score=159.93 Aligned_cols=178 Identities=29% Similarity=0.271 Sum_probs=146.2
Q ss_pred CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897 96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL 175 (290)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 175 (290)
+++++|+|++|.+++..+. +|..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++ .++..|..+++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~----~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTC
T ss_pred cCCCEEEeeCCCCCCCCHH----HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCC
Confidence 4799999999999988776 89999999999999999997777789999999999999999985 344578999999
Q ss_pred CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCC--ccccccCCC----C
Q 022897 176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKN----L 246 (290)
Q Consensus 176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~----L 246 (290)
++|++++|.+ ..++...++.+++|++|++++|.++ .+..+..+++|++|++++|.+++ +..+..+.+ .
T Consensus 127 ~~L~Ls~N~l---~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 127 QKLVAVETNL---ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp CEEECTTSCC---CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CEEECCCCcC---CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 9999999986 3455546899999999999999986 46777889999999999999988 444544333 4
Q ss_pred CEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcc
Q 022897 247 EALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTT 283 (290)
Q Consensus 247 ~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~ 283 (290)
..++++.|.+. .++.. ......+..+++.+|..+.
T Consensus 204 ~~~~ls~n~l~-~i~~~-~~~~~~~~~l~l~~n~~~~ 238 (635)
T 4g8a_A 204 LSLDLSLNPMN-FIQPG-AFKEIRLHKLTLRNNFDSL 238 (635)
T ss_dssp CEEECTTCCCC-EECTT-TTTTCEEEEEEEESCCSSH
T ss_pred hhhhcccCccc-ccCcc-cccchhhhhhhhhcccccc
Confidence 57899999998 56665 3334456788888886653
No 96
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=9.6e-19 Score=151.29 Aligned_cols=155 Identities=25% Similarity=0.207 Sum_probs=104.4
Q ss_pred CCCcEEECCCCcccCccchhhhhhcC-CCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCC
Q 022897 96 EELQSLNLSDNWFRGFYENKAYDSFG-SLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRY 174 (290)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 174 (290)
+.++.|+|++|.+++..+. .|. .+++|++|+|++|.+++..+..|..+++|++|+|++|.++.. ++..+..+++
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~----~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~ 113 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAE----WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQA 113 (361)
T ss_dssp TTCSEEECCSSCCCEECTT----SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTT
T ss_pred CCCCEEECCCCCCCccChh----hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcC
Confidence 4578888888888776665 565 788888888888888766666777888888888888887643 3345677777
Q ss_pred CCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcC-C---CCCCCCcEEEccCCCCCC--ccccccCCC--
Q 022897 175 LQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQG-L---ADLPNLKTLDLRDCGITT--IQGLAKLKN-- 245 (290)
Q Consensus 175 L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~-~---~~l~~L~~L~l~~n~l~~--~~~l~~~~~-- 245 (290)
|++|++++|.+ ..++...+..+++|++|+|++|.++ ++.. + ..+++|+.|++++|.++. +..+..++.
T Consensus 114 L~~L~L~~N~i---~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~ 190 (361)
T 2xot_A 114 LEVLLLYNNHI---VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190 (361)
T ss_dssp CCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHH
T ss_pred CCEEECCCCcc---cEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhh
Confidence 78888877775 2333336677777777777777776 3332 2 456677777777777666 234555554
Q ss_pred CCEEeCCCCCCCC
Q 022897 246 LEALDLSWNNING 258 (290)
Q Consensus 246 L~~L~l~~n~l~~ 258 (290)
++.|+|++|.+..
T Consensus 191 l~~l~l~~N~~~C 203 (361)
T 2xot_A 191 KNGLYLHNNPLEC 203 (361)
T ss_dssp HTTEECCSSCEEC
T ss_pred cceEEecCCCccC
Confidence 3666777766653
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.78 E-value=4.5e-20 Score=159.72 Aligned_cols=217 Identities=18% Similarity=0.207 Sum_probs=138.8
Q ss_pred cEEeecccccccccccccccccccCCCcCCC-CCCCcEEECCCCcccCccchhhhhhcCCC-CCCcEEECCCCcCCCCch
Q 022897 64 RVMQLSLTYTERLNYYDRTSASLLNMSLFHP-FEELQSLNLSDNWFRGFYENKAYDSFGSL-KQLKILDLGCNFFNDSIL 141 (290)
Q Consensus 64 ~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~ 141 (290)
.++.++++++. +...+...+.. .+.. +++|++|++++|.+++..+..+...+..+ ++|++|++++|.+++..+
T Consensus 52 ~L~~L~Ls~N~----l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 52 SVTSLNLSGNS----LGFKNSDELVQ-ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp TCCEEECCSSC----GGGSCHHHHHH-HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred ceeEEECcCCC----CCHHHHHHHHH-HHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 57777777776 32222211111 1122 27888888888888877666555556666 788888888888876665
Q ss_pred hhcc----C-CCCCCEEEccCCCCCCCcch---hhcccCC-CCCeeeCCCCCCCCCCccc-hhhhccC-CCccEEEcCCC
Q 022897 142 PYLN----T-LTSLTTLILYSNSIEGSGTM---QGLANLR-YLQVLDLSWNENITSGSLT-RLGLANL-TNLKELDLRGC 210 (290)
Q Consensus 142 ~~l~----~-l~~L~~L~l~~n~~~~~~~~---~~~~~l~-~L~~L~l~~n~~~~~~~~~-~~~~~~~-~~L~~L~l~~n 210 (290)
..+. . .++|++|++++|.+++.... ..+..++ +|++|++++|.+...+... ...+..+ ++|++|++++|
T Consensus 127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 5443 3 35888888888888754332 2334454 8888888888863222100 0134445 48888888888
Q ss_pred CCCC------CcCCCC-CCCCcEEEccCCCCCCc------cccccCCCCCEEeCCCCCCCCc-------ccccccCCCCC
Q 022897 211 GITT------SQGLAD-LPNLKTLDLRDCGITTI------QGLAKLKNLEALDLSWNNINGS-------LESQGLADLPN 270 (290)
Q Consensus 211 ~l~~------~~~~~~-l~~L~~L~l~~n~l~~~------~~l~~~~~L~~L~l~~n~l~~~-------i~~~~l~~l~~ 270 (290)
.++. +..+.. .++|++|++++|.+++. ..+..+++|++|++++|.+.+. ++.. +..+++
T Consensus 207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~-~~~l~~ 285 (362)
T 3goz_A 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA-FPNIQK 285 (362)
T ss_dssp CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTT-STTCCE
T ss_pred CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHH-hccCCc
Confidence 8762 333434 35888888888888772 2346678888888888874421 2222 667778
Q ss_pred CCEEecCCCCCccccc
Q 022897 271 LKILDLRDCGMTTIQG 286 (290)
Q Consensus 271 L~~L~L~~n~l~~~~~ 286 (290)
|++|++++|++....+
T Consensus 286 L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 286 IILVDKNGKEIHPSHS 301 (362)
T ss_dssp EEEECTTSCBCCGGGC
T ss_pred eEEEecCCCcCCCcch
Confidence 8888888888876643
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=4e-18 Score=143.03 Aligned_cols=169 Identities=28% Similarity=0.341 Sum_probs=141.7
Q ss_pred CcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCe
Q 022897 98 LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQV 177 (290)
Q Consensus 98 L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 177 (290)
+..+.+..+.+.+.. .+..+++|++|++++|.+... +.+..+++|++|++++|.+++..+ +..+++|++
T Consensus 26 ~~~~~l~~~~~~~~~------~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~ 94 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV------TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGW 94 (291)
T ss_dssp HHHHHTTCSCTTSEE------CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCE
T ss_pred HHHHHhcCCCccccc------chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc---cccCCCCCE
Confidence 334455555555443 234678999999999998754 347889999999999999987432 889999999
Q ss_pred eeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCC
Q 022897 178 LDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNIN 257 (290)
Q Consensus 178 L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~ 257 (290)
|++++|.+ ..++ .+..+++|++|++++|.++..+.+..+++|++|++++|.+++.+.+..+++|++|++++|.++
T Consensus 95 L~l~~n~l---~~~~--~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 95 LFLDENKV---KDLS--SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp EECCSSCC---CCGG--GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred EECCCCcC---CCCh--hhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccc
Confidence 99999996 2344 588999999999999999966778899999999999999999888999999999999999999
Q ss_pred CcccccccCCCCCCCEEecCCCCCcccc
Q 022897 258 GSLESQGLADLPNLKILDLRDCGMTTIQ 285 (290)
Q Consensus 258 ~~i~~~~l~~l~~L~~L~L~~n~l~~~~ 285 (290)
+ +++ +..+++|++|++++|++++.+
T Consensus 170 ~-~~~--l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 170 D-IVP--LAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp C-CGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred c-chh--hcCCCccCEEECCCCcCCCCh
Confidence 5 444 888999999999999999864
No 99
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=2.8e-18 Score=157.68 Aligned_cols=83 Identities=20% Similarity=0.219 Sum_probs=66.6
Q ss_pred CCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCC
Q 022897 200 TNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRD 278 (290)
Q Consensus 200 ~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~ 278 (290)
++|++|++++|.++ ++ ..+++|++|++++|.++..+. .+++|+.|++++|.++ .+|.. +..+++|+.|+|++
T Consensus 221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~-~lp~~-l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLT-RLPES-LIHLSSETTVNLEG 293 (622)
T ss_dssp TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCC-SCCGG-GGGSCTTCEEECCS
T ss_pred CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCC-cCCHH-HhhccccCEEEecC
Confidence 56777777777776 33 455788888888888887444 5678999999999998 78877 88899999999999
Q ss_pred CCCcccccccC
Q 022897 279 CGMTTIQGKIF 289 (290)
Q Consensus 279 n~l~~~~~~~f 289 (290)
|++++.+|..|
T Consensus 294 N~l~~~~~~~l 304 (622)
T 3g06_A 294 NPLSERTLQAL 304 (622)
T ss_dssp CCCCHHHHHHH
T ss_pred CCCCCcCHHHH
Confidence 99998877643
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1.3e-18 Score=150.57 Aligned_cols=151 Identities=27% Similarity=0.313 Sum_probs=70.0
Q ss_pred CcEEECCCCcCCCCchhhcc-CCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccE
Q 022897 126 LKILDLGCNFFNDSILPYLN-TLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKE 204 (290)
Q Consensus 126 L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~ 204 (290)
+++|+|++|.+++..+..+. .+++|++|+|++|.+++. ++..+..+++|++|++++|.+ ..++...+..+++|++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNHL---HTLDEFLFSDLQALEV 116 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCC---CEECTTTTTTCTTCCE
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCcC---CcCCHHHhCCCcCCCE
Confidence 45555555555443333343 455555555555555432 222444555555555555553 2233323445555555
Q ss_pred EEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC-ccc-c---ccCCCCCEEeCCCCCCCCcccccccCCCCC--CCEEe
Q 022897 205 LDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT-IQG-L---AKLKNLEALDLSWNNINGSLESQGLADLPN--LKILD 275 (290)
Q Consensus 205 L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~-~~~-l---~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~--L~~L~ 275 (290)
|+|++|.++ .+..+..+++|++|++++|.++. +.. + ..+++|+.|+|++|.++ .+|...+..++. ++.|+
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLY 195 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEE
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEE
Confidence 555555554 23444555555555555555554 211 2 33455555555555554 333322444443 24455
Q ss_pred cCCCCC
Q 022897 276 LRDCGM 281 (290)
Q Consensus 276 L~~n~l 281 (290)
|++|++
T Consensus 196 l~~N~~ 201 (361)
T 2xot_A 196 LHNNPL 201 (361)
T ss_dssp CCSSCE
T ss_pred ecCCCc
Confidence 555544
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=8.5e-19 Score=138.69 Aligned_cols=154 Identities=21% Similarity=0.317 Sum_probs=128.0
Q ss_pred CCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccC
Q 022897 93 HPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANL 172 (290)
Q Consensus 93 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l 172 (290)
..+++|++|++++|.+.... .+..+++|++|++++|.+.. ++.+..+++|++|++++|.+++..+ ..+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT------GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKI-PNLSGL 111 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT------TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGS-CCCTTC
T ss_pred hhcCCccEEeccCCCccChH------HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccC-hhhcCC
Confidence 56788999999999987432 46778999999999997653 4578899999999999999986444 478889
Q ss_pred CCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCC-CCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeC
Q 022897 173 RYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCG-ITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDL 251 (290)
Q Consensus 173 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l 251 (290)
++|++|++++|.+ .+..+. .+..+++|++|++++|. ++..+.+..+++|++|++++|.+++.+.+..+++|++|++
T Consensus 112 ~~L~~L~Ls~n~i--~~~~~~-~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l 188 (197)
T 4ezg_A 112 TSLTLLDISHSAH--DDSILT-KINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYA 188 (197)
T ss_dssp TTCCEEECCSSBC--BGGGHH-HHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEE
T ss_pred CCCCEEEecCCcc--CcHhHH-HHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEe
Confidence 9999999999997 444454 78899999999999998 7744578899999999999999999778999999999999
Q ss_pred CCCCCCC
Q 022897 252 SWNNING 258 (290)
Q Consensus 252 ~~n~l~~ 258 (290)
++|.+.+
T Consensus 189 ~~N~i~~ 195 (197)
T 4ezg_A 189 FSQTIGG 195 (197)
T ss_dssp CBC----
T ss_pred eCcccCC
Confidence 9998863
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=5.7e-18 Score=136.28 Aligned_cols=149 Identities=19% Similarity=0.180 Sum_probs=119.9
Q ss_pred cEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCee
Q 022897 99 QSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVL 178 (290)
Q Consensus 99 ~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 178 (290)
+.++++++.++..+. .+. +.|++|++++|.+++..+..|..+++|++|++++|.+++. .+..+..+++|++|
T Consensus 14 ~~v~c~~~~l~~iP~-----~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L 85 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-----NLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSL 85 (220)
T ss_dssp TEEECTTSCCSSCCS-----SCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEE
T ss_pred CEEEcCCCCcCcCCC-----ccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEE
Confidence 678888888876543 232 6899999999999876667888899999999999998764 34578888999999
Q ss_pred eCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCC
Q 022897 179 DLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWN 254 (290)
Q Consensus 179 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n 254 (290)
++++|.+ ..++...+..+++|++|+|++|.++ .+..+..+++|++|++++|.+++ +..+..+++|+.|++++|
T Consensus 86 ~Ls~N~l---~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 86 VLYGNKI---TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp ECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCcC---CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 9999985 3566546788889999999999888 46678888899999999998888 345788888999999988
Q ss_pred CCCC
Q 022897 255 NING 258 (290)
Q Consensus 255 ~l~~ 258 (290)
.+..
T Consensus 163 ~~~c 166 (220)
T 2v9t_B 163 PFIC 166 (220)
T ss_dssp CEEC
T ss_pred CcCC
Confidence 8864
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=6.8e-18 Score=154.82 Aligned_cols=170 Identities=29% Similarity=0.318 Sum_probs=141.8
Q ss_pred cCcEEeecccccccccccccccccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch
Q 022897 62 TRRVMQLSLTYTERLNYYDRTSASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL 141 (290)
Q Consensus 62 ~~~v~~l~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 141 (290)
...++.++++++. +..+ ..+..+++|+.|+|++|.+.+..+ +..+++|++|+|++|.+.+ +
T Consensus 42 L~~L~~L~l~~n~---------i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~--l 102 (605)
T 1m9s_A 42 LNSIDQIIANNSD---------IKSV--QGIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKD--L 102 (605)
T ss_dssp HTTCCCCBCTTCC---------CCCC--TTGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCC--C
T ss_pred CCCCCEEECcCCC---------CCCC--hHHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCC--C
Confidence 3456666666654 2222 247789999999999999987643 7789999999999999986 3
Q ss_pred hhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCC
Q 022897 142 PYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADL 221 (290)
Q Consensus 142 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l 221 (290)
+.+..+++|++|+|++|.+.+. ..+..+++|+.|+|++|.+ . .++ .+..+++|+.|+|++|.+.....+..+
T Consensus 103 ~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l--~-~l~--~l~~l~~L~~L~Ls~N~l~~~~~l~~l 174 (605)
T 1m9s_A 103 SSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKI--T-DIT--VLSRLTKLDTLSLEDNQISDIVPLAGL 174 (605)
T ss_dssp TTSTTCTTCCEEECTTSCCCCC---GGGGGCTTCSEEECCSSCC--C-CCG--GGGSCTTCSEEECCSSCCCCCGGGTTC
T ss_pred hhhccCCCCCEEEecCCCCCCC---ccccCCCccCEEECCCCcc--C-Cch--hhcccCCCCEEECcCCcCCCchhhccC
Confidence 4788999999999999999873 3688999999999999997 3 233 788999999999999999833338999
Q ss_pred CCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCC
Q 022897 222 PNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNING 258 (290)
Q Consensus 222 ~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~ 258 (290)
++|+.|+|++|.+++.+.+..+++|+.|+|++|.+++
T Consensus 175 ~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 175 TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcC
Confidence 9999999999999998889999999999999999874
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=1.4e-18 Score=149.63 Aligned_cols=187 Identities=19% Similarity=0.150 Sum_probs=148.3
Q ss_pred CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch-hhccCCCCCCE-EEccCCCCCCCcchhhcccCC
Q 022897 96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL-PYLNTLTSLTT-LILYSNSIEGSGTMQGLANLR 173 (290)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~-L~l~~n~~~~~~~~~~~~~l~ 173 (290)
+++++|+|++|+++...+. +|.++++|++|+|++|.+.+.++ ..|.+++++++ +.+..|.++. +++..+..++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP 104 (350)
T ss_dssp TTCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCT
T ss_pred CCCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcc
Confidence 5799999999999987666 78999999999999999876555 45788888876 5666788875 3456889999
Q ss_pred CCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCC-CCCC--CCcCCCCCC-CCcEEEccCCCCCC-ccccccCCCCCE
Q 022897 174 YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRG-CGIT--TSQGLADLP-NLKTLDLRDCGITT-IQGLAKLKNLEA 248 (290)
Q Consensus 174 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~--~~~~~~~l~-~L~~L~l~~n~l~~-~~~l~~~~~L~~ 248 (290)
+|++|++++|.+ ..++...+....++..|++.+ +.+. ....+..+. .++.|++++|.++. ++......+|+.
T Consensus 105 ~L~~L~l~~n~l---~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~ 181 (350)
T 4ay9_X 105 NLQYLLISNTGI---KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDE 181 (350)
T ss_dssp TCCEEEEEEECC---SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEE
T ss_pred cccccccccccc---ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhH
Confidence 999999999996 334443555666788888866 4565 344555554 68999999999998 455556678999
Q ss_pred EeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccCC
Q 022897 249 LDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIFK 290 (290)
Q Consensus 249 L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f~ 290 (290)
|+++++...+.+|...|..+++|++|+|++|+|+.+++..|+
T Consensus 182 l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~ 223 (350)
T 4ay9_X 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE 223 (350)
T ss_dssp EECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT
T ss_pred HhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc
Confidence 999864444489988789999999999999999999988764
No 105
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=2.6e-18 Score=157.92 Aligned_cols=57 Identities=23% Similarity=0.205 Sum_probs=36.8
Q ss_pred CCCcEEEccCCCCCCccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccc
Q 022897 222 PNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQ 285 (290)
Q Consensus 222 ~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~ 285 (290)
++|++|++++|.+++.+ ..+++|+.|++++|.++ .+|. .+++|+.|+|++|+|+.++
T Consensus 221 ~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~~lp 277 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLTRLP 277 (622)
T ss_dssp TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCCSCC
T ss_pred CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCCcCC
Confidence 45666666666666533 34466777777777776 4554 3567788888888887554
No 106
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=1.1e-19 Score=170.29 Aligned_cols=196 Identities=22% Similarity=0.139 Sum_probs=110.2
Q ss_pred ccHHHHHHHHHHhhhhhccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCceEeccccCcEEeecccccccccccccccccc
Q 022897 7 CLETERTALLEIKSFFISVGDIGYDDKILPSWVGEDDGMPSDCCDDWEGVKCNATTRRVMQLSLTYTERLNYYDRTSASL 86 (290)
Q Consensus 7 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~c~~~~~~v~~l~l~~~~~l~~l~~~~~~~ 86 (290)
..++++++++++...+.. +. ...-..|.. ...... .|.++.+. ..+++.++|.++. +..
T Consensus 129 ~~~~~~~~l~~~~~~~~~--~~---~~~~~~~~~----~~~~~~-~~~~~~~s--~~~~~~l~L~~n~----~~~----- 187 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTD--SK---TAKKQQPTG----DSTPSG-TATNSAVS--TPLTPKIELFANG----KDE----- 187 (727)
T ss_dssp ---CCCHHHHHHHHHHHH--HH---TTC----------------------------------------------------
T ss_pred ccccchhhhhhhhhhccc--cc---CcccCCCcC----CCCccc-cCCCceec--CCccceEEeeCCC----CCc-----
Confidence 445678999999999876 32 344566754 133445 89998885 4678888887766 211
Q ss_pred cCCCcCCCCCCCcEEECCCCcccCccc-----hhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCC
Q 022897 87 LNMSLFHPFEELQSLNLSDNWFRGFYE-----NKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIE 161 (290)
Q Consensus 87 ~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 161 (290)
... ..|+.++|+.+.+.+... ....+.+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++
T Consensus 188 ~~~------~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~ 260 (727)
T 4b8c_D 188 ANQ------ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT 260 (727)
T ss_dssp ----------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS
T ss_pred chh------hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc
Confidence 111 112333333333322110 011226788999999999999988 67777778999999999999998
Q ss_pred CCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC
Q 022897 162 GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT 236 (290)
Q Consensus 162 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~ 236 (290)
.++ ..+..+++|++|+|++|.+ . .+|. .+..+++|++|+|++|.++ +|..+..+++|++|+|++|.+++
T Consensus 261 -~lp-~~~~~l~~L~~L~Ls~N~l--~-~lp~-~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 261 -ELP-AEIKNLSNLRVLDLSHNRL--T-SLPA-ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp -CCC-GGGGGGTTCCEEECTTSCC--S-SCCS-SGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred -ccC-hhhhCCCCCCEEeCcCCcC--C-ccCh-hhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 444 5788999999999999996 3 6776 7889999999999999998 77789999999999999999997
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=134.20 Aligned_cols=134 Identities=22% Similarity=0.239 Sum_probs=115.4
Q ss_pred CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897 96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL 175 (290)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 175 (290)
..+++|++++|.+++..+.. .|..+++|++|++++|.+++..+..|..+++|++|++++|.+++. ++..+..+++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L 107 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESL 107 (220)
T ss_dssp TTCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSC
T ss_pred CCCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcCC
Confidence 35689999999998875431 578899999999999999987777899999999999999999865 44578999999
Q ss_pred CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC
Q 022897 176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT 236 (290)
Q Consensus 176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~ 236 (290)
++|++++|.+ .+ +++..+..+++|++|++++|.++ .+..+..+++|++|++++|.+..
T Consensus 108 ~~L~Ls~N~l--~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 108 KTLMLRSNRI--TC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CEEECTTSCC--CC-BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CEEECCCCcC--Ce-ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 9999999996 43 43337889999999999999998 47789999999999999999986
No 108
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=4.8e-20 Score=164.36 Aligned_cols=187 Identities=24% Similarity=0.226 Sum_probs=93.9
Q ss_pred CCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCch-----hhccCCCCCCEEEccCCCCCCCc---chhh
Q 022897 97 ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSIL-----PYLNTLTSLTTLILYSNSIEGSG---TMQG 168 (290)
Q Consensus 97 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~l~~n~~~~~~---~~~~ 168 (290)
+|++|++++|.++......+...+..+++|++|++++|.+.+... ..+..+++|++|++++|.+++.. .+..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 444455544444433222222234444555555555554433211 11123455555555555554321 1223
Q ss_pred cccCCCCCeeeCCCCCCCCCC--ccchhhhccCCCccEEEcCCCCCC------CCcCCCCCCCCcEEEccCCCCCC--cc
Q 022897 169 LANLRYLQVLDLSWNENITSG--SLTRLGLANLTNLKELDLRGCGIT------TSQGLADLPNLKTLDLRDCGITT--IQ 238 (290)
Q Consensus 169 ~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~------~~~~~~~l~~L~~L~l~~n~l~~--~~ 238 (290)
+..+++|++|++++|.+...+ .+........++|++|++++|.++ ++..+..+++|++|++++|.+++ +.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 444555666666555531110 011100112245666666666555 12334455677777777777665 22
Q ss_pred cccc-----CCCCCEEeCCCCCCCC----cccccccCCCCCCCEEecCCCCCccc
Q 022897 239 GLAK-----LKNLEALDLSWNNING----SLESQGLADLPNLKILDLRDCGMTTI 284 (290)
Q Consensus 239 ~l~~-----~~~L~~L~l~~n~l~~----~i~~~~l~~l~~L~~L~L~~n~l~~~ 284 (290)
.+.. .++|++|++++|.+++ .++.. +..+++|++|++++|++++.
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT-LLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH-HHhCCCccEEECCCCCCCHH
Confidence 2221 5677777777777764 45555 66677778888887777654
No 109
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=5.8e-20 Score=163.84 Aligned_cols=61 Identities=28% Similarity=0.406 Sum_probs=28.0
Q ss_pred CCcEEEccCCCCCC------ccccccCCCCCEEeCCCCCCCCccccc---ccC-CCCCCCEEecCCCCCcc
Q 022897 223 NLKTLDLRDCGITT------IQGLAKLKNLEALDLSWNNINGSLESQ---GLA-DLPNLKILDLRDCGMTT 283 (290)
Q Consensus 223 ~L~~L~l~~n~l~~------~~~l~~~~~L~~L~l~~n~l~~~i~~~---~l~-~l~~L~~L~L~~n~l~~ 283 (290)
+|++|++++|.+++ +..+..+++|++|++++|.+++..+.. .+. ..++|++|+|++|++++
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 44444444444443 122334455555555555554322221 011 14456666666665553
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=5.1e-17 Score=147.70 Aligned_cols=160 Identities=23% Similarity=0.252 Sum_probs=130.6
Q ss_pred CCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCC
Q 022897 97 ELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ 176 (290)
Q Consensus 97 ~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 176 (290)
+|+.|++++|.+++. |. .+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ ++. +.. +|+
T Consensus 60 ~L~~L~Ls~n~L~~l-p~----~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRLNLSSL-PD----NL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE--LPA--SLK 123 (571)
T ss_dssp TCSEEECCSSCCSCC-CS----CC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--CCT--TCC
T ss_pred CccEEEeCCCCCCcc-CH----hH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--hhc--CCC
Confidence 799999999999884 43 33 378999999999998 566 457999999999999987 343 444 999
Q ss_pred eeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCC
Q 022897 177 VLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN 255 (290)
Q Consensus 177 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~ 255 (290)
+|++++|.+ . .+|. .+++|++|++++|.++ ++. .+++|++|++++|.+++.+.+. ++|+.|+|++|.
T Consensus 124 ~L~Ls~N~l--~-~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 124 HLDVDNNQL--T-MLPE----LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNL 191 (571)
T ss_dssp EEECCSSCC--S-CCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSC
T ss_pred EEECCCCcC--C-CCCC----cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCC
Confidence 999999996 3 3664 6789999999999998 444 6789999999999999944455 899999999999
Q ss_pred CCCcccccccCCCCCC-------CEEecCCCCCcccccccC
Q 022897 256 INGSLESQGLADLPNL-------KILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 256 l~~~i~~~~l~~l~~L-------~~L~L~~n~l~~~~~~~f 289 (290)
++ .+|. +.. +| +.|+|++|+|+.+++.++
T Consensus 192 L~-~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~ 227 (571)
T 3cvr_A 192 LE-SLPA--VPV--RNHHSEETEIFFRCRENRITHIPENIL 227 (571)
T ss_dssp CS-SCCC--CC----------CCEEEECCSSCCCCCCGGGG
T ss_pred CC-chhh--HHH--hhhcccccceEEecCCCcceecCHHHh
Confidence 99 7777 332 66 999999999998776554
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=3.1e-20 Score=169.30 Aligned_cols=185 Identities=21% Similarity=0.226 Sum_probs=146.6
Q ss_pred CCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCc-------------CCCCchhhccCCCCCCEEE-ccCC
Q 022897 93 HPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNF-------------FNDSILPYLNTLTSLTTLI-LYSN 158 (290)
Q Consensus 93 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~-------------l~~~~~~~l~~l~~L~~L~-l~~n 158 (290)
...++|+.|++++|.+.. +|. .++.+++|++|++++|. ..+..|..++.+++|+.|+ ++.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~-Lp~----~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n 420 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV-LQS----ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420 (567)
T ss_dssp STTTTSSSCCCCHHHHHH-HHH----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred ccCccceeccCChhhHHh-hHH----HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc
Confidence 567899999999998863 344 78888999999997774 4556677778888888888 5555
Q ss_pred CCCCCcc----hhhccc--CCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccC
Q 022897 159 SIEGSGT----MQGLAN--LRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRD 231 (290)
Q Consensus 159 ~~~~~~~----~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~ 231 (290)
.+..... ...+.. ...|+.|++++|.+ . .+| .+..+++|+.|++++|.++ +|..+..+++|+.|++++
T Consensus 421 ~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l--~-~lp--~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--T-VLC--HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCC--S-SCC--CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS
T ss_pred ccchhhhhhhhcccccccCccCceEEEecCCCC--C-CCc--CccccccCcEeecCcccccccchhhhcCCCCCEEECCC
Confidence 4321000 001111 13589999999986 3 366 3889999999999999998 788899999999999999
Q ss_pred CCCCCccccccCCCCCEEeCCCCCCCCcc-cccccCCCCCCCEEecCCCCCccccccc
Q 022897 232 CGITTIQGLAKLKNLEALDLSWNNINGSL-ESQGLADLPNLKILDLRDCGMTTIQGKI 288 (290)
Q Consensus 232 n~l~~~~~l~~~~~L~~L~l~~n~l~~~i-~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 288 (290)
|.+++++.+..+++|+.|+|++|.+++.. |.. +..+++|+.|+|++|++++.+|..
T Consensus 496 N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 496 NALENVDGVANLPRLQELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp SCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGG-GGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCCcccCCCCCCcEEECCCCCCCCCCCcHH-HhcCCCCCEEEecCCcCCCCccHH
Confidence 99999668999999999999999999654 666 899999999999999999988753
No 112
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=3e-16 Score=139.63 Aligned_cols=161 Identities=22% Similarity=0.211 Sum_probs=92.1
Q ss_pred CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897 96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL 175 (290)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 175 (290)
++|++|++++|.+.+ ++ .+..+++|++|++++|.+++ +|.. .++|++|++++|.+++ .+ .+..+++|
T Consensus 131 ~~L~~L~L~~n~l~~-lp-----~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L 197 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-----ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFL 197 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-----CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTC
T ss_pred CCCCEEECcCCCCCC-Cc-----ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cccCCCCC
Confidence 355555555555554 22 35555666666666665553 3322 2356666666666554 12 35666666
Q ss_pred CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEeCCCCC
Q 022897 176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALDLSWNN 255 (290)
Q Consensus 176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~ 255 (290)
++|++++|.+ . .++. ..++|++|++++|.++..+.+..+++|++|++++|.+++.+. .+++|+.|++++|.
T Consensus 198 ~~L~l~~N~l--~-~l~~----~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 198 TAIYADNNSL--K-KLPD----LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNY 268 (454)
T ss_dssp CEEECCSSCC--S-SCCC----CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSC
T ss_pred CEEECCCCcC--C-cCCC----CcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCc
Confidence 6666666664 2 2332 113666677777666622246667777777777777766322 23567777777777
Q ss_pred CCCcccccccCCCCCCCEEecCCCCCcc
Q 022897 256 INGSLESQGLADLPNLKILDLRDCGMTT 283 (290)
Q Consensus 256 l~~~i~~~~l~~l~~L~~L~L~~n~l~~ 283 (290)
+++ +|.. .++|++|++++|++++
T Consensus 269 l~~-l~~~----~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 269 LTD-LPEL----PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CSC-CCCC----CTTCCEEECCSSCCSE
T ss_pred ccc-cCcc----cCcCCEEECcCCccCc
Confidence 763 5442 3567777777777776
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=1.5e-17 Score=137.50 Aligned_cols=152 Identities=26% Similarity=0.300 Sum_probs=127.2
Q ss_pred cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897 91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA 170 (290)
Q Consensus 91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 170 (290)
.+..+++|++|++++|.+.... .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. + .+.
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~--~~~ 104 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA------GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-N--GIP 104 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-T--TCC
T ss_pred chhhcCcCcEEECcCCCcccch------HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-C--ccc
Confidence 3567889999999999887542 56788999999999999986544 88999999999999999863 2 233
Q ss_pred cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEEe
Q 022897 171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEALD 250 (290)
Q Consensus 171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~ 250 (290)
. ++|++|++++|.+. .++ .+..+++|++|++++|+++..+.+..+++|++|++++|.+++...+..+++|+.|+
T Consensus 105 ~-~~L~~L~L~~N~l~---~~~--~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 105 S-ACLSRLFLDNNELR---DTD--SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWID 178 (263)
T ss_dssp C-SSCCEEECCSSCCS---BSG--GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEE
T ss_pred c-CcccEEEccCCccC---CCh--hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCCEEe
Confidence 3 89999999999862 344 58889999999999999985557888999999999999999988888999999999
Q ss_pred CCCCCCCCc
Q 022897 251 LSWNNINGS 259 (290)
Q Consensus 251 l~~n~l~~~ 259 (290)
+++|.+++.
T Consensus 179 l~~N~~~~~ 187 (263)
T 1xeu_A 179 LTGQKCVNE 187 (263)
T ss_dssp EEEEEEECC
T ss_pred CCCCcccCC
Confidence 999988743
No 114
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=4.3e-16 Score=138.61 Aligned_cols=143 Identities=22% Similarity=0.229 Sum_probs=99.2
Q ss_pred cCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897 91 LFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA 170 (290)
Q Consensus 91 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 170 (290)
.++.+++|++|++++|.+++. +. . ..+|++|++++|.+++ +| .+..+++|++|++++|.+++. + .
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~l-p~----~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~-~--- 212 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKKL-PD----L---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-P-D--- 212 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSCC-CC----C---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-C-C---
T ss_pred ccCCCCCCCEEECCCCcCccc-CC----C---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-C-C---
Confidence 367778888888888887763 22 1 2478888888888775 44 577788888888888887752 2 1
Q ss_pred cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCCccccccCCCCCEE
Q 022897 171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITTIQGLAKLKNLEAL 249 (290)
Q Consensus 171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L 249 (290)
..++|++|++++|.+ . .+| .+..+++|++|++++|.++ .+. .+++|++|++++|.+++.+.. .++|+.|
T Consensus 213 ~~~~L~~L~l~~n~l--~-~lp--~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~l~~~--~~~L~~L 282 (454)
T 1jl5_A 213 LPLSLESIVAGNNIL--E-ELP--ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTDLPEL--PQSLTFL 282 (454)
T ss_dssp CCTTCCEEECCSSCC--S-SCC--CCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSCCCCC--CTTCCEE
T ss_pred CcCcccEEECcCCcC--C-ccc--ccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccccCcc--cCcCCEE
Confidence 124788888888875 2 455 3677888888888888877 333 236788888888887773322 3667777
Q ss_pred eCCCCCCCC
Q 022897 250 DLSWNNING 258 (290)
Q Consensus 250 ~l~~n~l~~ 258 (290)
++++|.+++
T Consensus 283 ~ls~N~l~~ 291 (454)
T 1jl5_A 283 DVSENIFSG 291 (454)
T ss_dssp ECCSSCCSE
T ss_pred ECcCCccCc
Confidence 777777764
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=5.9e-17 Score=124.69 Aligned_cols=129 Identities=28% Similarity=0.251 Sum_probs=68.7
Q ss_pred CCCCcEEECCCCcCC-CCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCC
Q 022897 123 LKQLKILDLGCNFFN-DSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTN 201 (290)
Q Consensus 123 l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 201 (290)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+ .+.++. .+..+++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l--~~~~~~-~~~~l~~ 96 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRI--FGGLDM-LAEKLPN 96 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCC--CSCCCH-HHHHCTT
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcC--chHHHH-HHhhCCC
Confidence 356666666666665 45555556666666666666666553 3556666666666666665 322333 4445566
Q ss_pred ccEEEcCCCCCC-CC--cCCCCCCCCcEEEccCCCCCC-cc----ccccCCCCCEEeCCCCCCC
Q 022897 202 LKELDLRGCGIT-TS--QGLADLPNLKTLDLRDCGITT-IQ----GLAKLKNLEALDLSWNNIN 257 (290)
Q Consensus 202 L~~L~l~~n~l~-~~--~~~~~l~~L~~L~l~~n~l~~-~~----~l~~~~~L~~L~l~~n~l~ 257 (290)
|++|++++|.++ .+ ..+..+++|++|++++|.+++ +. .+..+++|++|++++|.+.
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 666666665554 22 334444444444444444444 11 2334444444444444443
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=6.8e-18 Score=158.29 Aligned_cols=181 Identities=21% Similarity=0.065 Sum_probs=111.4
Q ss_pred CCCcEEECCCCcccCccchhhhhhcCCCCCCcE-----EECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897 96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKI-----LDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA 170 (290)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~-----L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 170 (290)
+.++.|++.+|.+..... .+.....|+. ++++.|.+. ..+..+..++.|+.|+|++|.+.. ++. .+.
T Consensus 173 ~~~~~l~L~~n~~~~~~~-----~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~-l~~-~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ-----ALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFN-ISA-NIF 244 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSC-CCG-GGG
T ss_pred CccceEEeeCCCCCcchh-----hHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCC-CCh-hhc
Confidence 457888888888766432 2222222332 333334443 456778899999999999999984 443 566
Q ss_pred cCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCE
Q 022897 171 NLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEA 248 (290)
Q Consensus 171 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~ 248 (290)
.+++|++|+|++|.+ . .+|. .+..+++|++|+|++|.++ +|..+..+++|++|+|++|.++. |..+..+++|++
T Consensus 245 ~l~~L~~L~Ls~N~l--~-~lp~-~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSL--T-ELPA-EIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQF 320 (727)
T ss_dssp GCCSCSCCBCTTSCC--S-CCCG-GGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCC
T ss_pred CCCCCCEEEeeCCcC--c-ccCh-hhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccE
Confidence 899999999999996 3 6776 7899999999999999998 88889999999999999999988 667999999999
Q ss_pred EeCCCCCCCCcccccccCCCC-CCCEEecCCCCCcccccccC
Q 022897 249 LDLSWNNINGSLESQGLADLP-NLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 249 L~l~~n~l~~~i~~~~l~~l~-~L~~L~L~~n~l~~~~~~~f 289 (290)
|+|++|.+++.+|.. +..+. .+..++|++|.+++.+|..+
T Consensus 321 L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 321 LGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp EECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred EeCCCCccCCCChHH-HhhcchhhhHHhhccCcccCcCcccc
Confidence 999999999877765 32221 11235566666666665543
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=1.1e-15 Score=120.27 Aligned_cols=130 Identities=23% Similarity=0.252 Sum_probs=99.2
Q ss_pred cEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEE
Q 022897 127 KILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD 206 (290)
Q Consensus 127 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~ 206 (290)
++++++++.+. .+|..+. .+|++|++++|.+++..+...+..+++|++|++++|.+ .+..+. .+..+++|++|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~-~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL--TGIEPN-AFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC--CCBCTT-TTTTCTTCCEEE
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC--CCcCHh-HcCCcccCCEEE
Confidence 78899988885 5666543 38899999999887643322477888899999988886 433343 778888888888
Q ss_pred cCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccc
Q 022897 207 LRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLES 262 (290)
Q Consensus 207 l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~ 262 (290)
+++|+++ .+..+..+++|++|++++|.+++ +..+..+++|++|++++|.+.+..+.
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 8888888 45557788888888888888887 55677888888888888888866553
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=1.7e-15 Score=119.08 Aligned_cols=128 Identities=18% Similarity=0.180 Sum_probs=107.7
Q ss_pred CcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchh-hccCCCCCCEEEccCCCCCCCcchhhcccCCCCC
Q 022897 98 LQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILP-YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQ 176 (290)
Q Consensus 98 L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 176 (290)
-+.++++++.+...+. .+. ..|++|++++|.+.+..+. .+..+++|++|++++|.+++..+ ..+..+++|+
T Consensus 10 ~~~l~~s~~~l~~ip~-----~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~ 81 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPR-----DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQ 81 (192)
T ss_dssp TTEEECTTSCCSSCCS-----CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCC
T ss_pred CCEEEcCCCCcCcCcc-----CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH-hHcCCcccCC
Confidence 3789999999965533 332 3899999999999866554 48899999999999999987544 5889999999
Q ss_pred eeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC
Q 022897 177 VLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT 236 (290)
Q Consensus 177 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~ 236 (290)
+|++++|.+ . .++...+..+++|++|++++|+++ .+..+..+++|++|++++|.++.
T Consensus 82 ~L~Ls~N~l--~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 82 ELQLGENKI--K-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp EEECCSCCC--C-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred EEECCCCcC--C-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 999999996 3 444436889999999999999998 57889999999999999999987
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=3.2e-16 Score=118.09 Aligned_cols=107 Identities=31% Similarity=0.351 Sum_probs=48.9
Q ss_pred CCCcEEECCCCcCC-CCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCc
Q 022897 124 KQLKILDLGCNFFN-DSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNL 202 (290)
Q Consensus 124 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 202 (290)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+ .+.++. .+..+++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i--~~~~~~-~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRV--SGGLEV-LAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCC--CSCTHH-HHHHCTTC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcc--cchHHH-HhhhCCCC
Confidence 44555555555554 34444445555555555555555442 2444555555555555554 222332 33444444
Q ss_pred cEEEcCCCCCCC-C--cCCCCCCCCcEEEccCCCCCC
Q 022897 203 KELDLRGCGITT-S--QGLADLPNLKTLDLRDCGITT 236 (290)
Q Consensus 203 ~~L~l~~n~l~~-~--~~~~~l~~L~~L~l~~n~l~~ 236 (290)
++|++++|.++. + ..+..+++|++|++++|.+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 444444444431 1 233333444444444444433
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=2.6e-16 Score=121.01 Aligned_cols=135 Identities=27% Similarity=0.267 Sum_probs=113.5
Q ss_pred CCCCCCEEEccCCCCC-CCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCC
Q 022897 146 TLTSLTTLILYSNSIE-GSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLP 222 (290)
Q Consensus 146 ~l~~L~~L~l~~n~~~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~ 222 (290)
..++|++|++++|.++ +.++ ..+..+++|++|++++|.+.. + . .+..+++|++|++++|.++ .+..+..++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~---~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLIS---V-S-NLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCC---C-S-SCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred CcccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCC---h-h-hhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 3578999999999998 3433 467889999999999999732 3 3 7889999999999999998 444555699
Q ss_pred CCcEEEccCCCCCC-c--cccccCCCCCEEeCCCCCCCCcccc---cccCCCCCCCEEecCCCCCcccccc
Q 022897 223 NLKTLDLRDCGITT-I--QGLAKLKNLEALDLSWNNINGSLES---QGLADLPNLKILDLRDCGMTTIQGK 287 (290)
Q Consensus 223 ~L~~L~l~~n~l~~-~--~~l~~~~~L~~L~l~~n~l~~~i~~---~~l~~l~~L~~L~L~~n~l~~~~~~ 287 (290)
+|++|++++|.+++ + ..+..+++|++|++++|.+++ +|. ..+..+++|++|++++|.+...+..
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 99999999999998 3 678899999999999999984 554 3488999999999999999887654
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=3.8e-15 Score=115.51 Aligned_cols=110 Identities=25% Similarity=0.213 Sum_probs=72.7
Q ss_pred CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897 96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL 175 (290)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 175 (290)
++|++|++++|.+.+..+. .|..+++|++|++++|.+++..+..+..+++|++|++++|.+++. ++..+..+++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L 102 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQL 102 (177)
T ss_dssp TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred CCCcEEEeCCCcccEeCHH----HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCccc
Confidence 5788888888888776554 567788888888888888766556667777788888877777653 33345666677
Q ss_pred CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC
Q 022897 176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT 213 (290)
Q Consensus 176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 213 (290)
++|++++|.+ ..++...+..+++|++|++++|.+.
T Consensus 103 ~~L~l~~N~l---~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 103 KELALDTNQL---KSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CEEECCSSCC---SCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEECcCCcc---eEeCHHHhcCCcccCEEEecCCCee
Confidence 7777776664 2344323445555555555555443
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.9e-15 Score=113.79 Aligned_cols=126 Identities=27% Similarity=0.257 Sum_probs=95.8
Q ss_pred CCCCcEEECCCCccc-CccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCC
Q 022897 95 FEELQSLNLSDNWFR-GFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLR 173 (290)
Q Consensus 95 ~~~L~~L~l~~n~l~-~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 173 (290)
.++|++|++++|.+. +.++. .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ ..+..++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG----LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS----CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCT
T ss_pred CccCeEEEccCCcCChhHHHH----HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH-HHhhhCC
Confidence 467888899988887 55554 667888899999988888765 667888889999999998887533 4666788
Q ss_pred CCCeeeCCCCCCCCCCccc-hhhhccCCCccEEEcCCCCCC-CCc----CCCCCCCCcEEEcc
Q 022897 174 YLQVLDLSWNENITSGSLT-RLGLANLTNLKELDLRGCGIT-TSQ----GLADLPNLKTLDLR 230 (290)
Q Consensus 174 ~L~~L~l~~n~~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~-~~~----~~~~l~~L~~L~l~ 230 (290)
+|++|++++|.+ . .++ ...+..+++|++|++++|.++ .+. .+..+++|++|+++
T Consensus 89 ~L~~L~ls~N~i--~-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNKI--K-DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSCC--C-SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCcC--C-ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 899999988886 3 232 126788888999999998887 333 46677777777765
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=1.4e-14 Score=112.31 Aligned_cols=129 Identities=22% Similarity=0.153 Sum_probs=82.8
Q ss_pred CcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEE
Q 022897 126 LKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKEL 205 (290)
Q Consensus 126 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L 205 (290)
.+.++++++.++. +|..+ .++|++|++++|.+++. ++..+..+++|++|++++|.+ ..++...+..+++|++|
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQI---QSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC---CCCCTTTTTTCTTCCEE
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcc---eEeChhHccCCCccCEE
Confidence 4677777777763 44332 36778888888877643 334566777777777777775 23444345677777777
Q ss_pred EcCCCCCC-C-CcCCCCCCCCcEEEccCCCCCC-cc-ccccCCCCCEEeCCCCCCCCccc
Q 022897 206 DLRGCGIT-T-SQGLADLPNLKTLDLRDCGITT-IQ-GLAKLKNLEALDLSWNNINGSLE 261 (290)
Q Consensus 206 ~l~~n~l~-~-~~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~~i~ 261 (290)
++++|.++ . +..+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+.+..+
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 77777776 2 3335666777777777777766 22 24566677777777777665544
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=1.5e-14 Score=113.71 Aligned_cols=124 Identities=22% Similarity=0.243 Sum_probs=92.1
Q ss_pred cEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEE
Q 022897 127 KILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELD 206 (290)
Q Consensus 127 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~ 206 (290)
++++++++.++ .+|..+ .++|++|++++|.++. ++ ..+..+++|++|++++|.+ . .++...+..+++|++|+
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~~-ip-~~~~~l~~L~~L~Ls~N~i--~-~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFTL-VP-KELSNYKHLTLIDLSNNRI--S-TLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCCS-CC-GGGGGCTTCCEEECCSSCC--C-CCCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCch-hH-HHhhcccCCCEEECCCCcC--C-EeCHhHccCCCCCCEEE
Confidence 67888888876 455544 3578888888888874 33 5788888888888888885 2 34444677888888888
Q ss_pred cCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCC
Q 022897 207 LRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNING 258 (290)
Q Consensus 207 l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~ 258 (290)
|++|.++ .+..+..+++|++|++++|.++. +..+..+++|+.|++++|.+..
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8888887 34567788888888888888887 2347778888888888887764
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=2.1e-14 Score=112.97 Aligned_cols=109 Identities=22% Similarity=0.284 Sum_probs=79.9
Q ss_pred CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897 96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL 175 (290)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 175 (290)
++|++|++++|.++... . .|..+++|++|++++|.+++..+..|..+++|++|++++|.+++. ++..+..+++|
T Consensus 31 ~~l~~L~L~~n~i~~ip-~----~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i-~~~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-K----ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI-PPRTFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSSCCCSCC-G----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTC
T ss_pred CCCCEEECCCCcCchhH-H----HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEe-CHHHhCCCCCC
Confidence 46888888888887443 3 677888888888888888877777788888888888888888754 33467777788
Q ss_pred CeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC
Q 022897 176 QVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT 213 (290)
Q Consensus 176 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 213 (290)
++|++++|.+ ..++...+..+++|++|++++|.+.
T Consensus 105 ~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 105 RLLSLHGNDI---SVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CEEECCSSCC---CBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCCC---CeeChhhhhcCccccEEEeCCCCee
Confidence 8888877775 2444435666677777777776654
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=1.8e-17 Score=151.13 Aligned_cols=176 Identities=24% Similarity=0.290 Sum_probs=132.8
Q ss_pred CCcCCCCCCCcEEECCCCc-------------ccCccchhhhhhcCCCCCCcEEE-CCCCcCCCCchh------hccC--
Q 022897 89 MSLFHPFEELQSLNLSDNW-------------FRGFYENKAYDSFGSLKQLKILD-LGCNFFNDSILP------YLNT-- 146 (290)
Q Consensus 89 ~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~~l~~l~~L~~L~-l~~n~l~~~~~~------~l~~-- 146 (290)
+..++++++|++|++++|. ..+..+. .++.+++|+.|+ ++.|.+.. ++. .+..
T Consensus 365 p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~----~l~~l~~L~~L~~l~~n~~~~-L~~l~l~~n~i~~l~ 439 (567)
T 1dce_A 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE----TLQYFSTLKAVDPMRAAYLDD-LRSKFLLENSVLKME 439 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH----HHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHH----HHHHHHhcccCcchhhcccch-hhhhhhhcccccccC
Confidence 3457788899999997764 3333333 667777888887 55554321 111 0111
Q ss_pred CCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCCCCcE
Q 022897 147 LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLPNLKT 226 (290)
Q Consensus 147 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~ 226 (290)
...|+.|++++|.+++ ++ .+..+++|+.|++++|.+ . .+|. .+..+++|++|+|++|.++..+.+..+++|++
T Consensus 440 ~~~L~~L~Ls~n~l~~-lp--~~~~l~~L~~L~Ls~N~l--~-~lp~-~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~ 512 (567)
T 1dce_A 440 YADVRVLHLAHKDLTV-LC--HLEQLLLVTHLDLSHNRL--R-ALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQE 512 (567)
T ss_dssp HTTCSEEECTTSCCSS-CC--CGGGGTTCCEEECCSSCC--C-CCCG-GGGGCTTCCEEECCSSCCCCCGGGTTCSSCCE
T ss_pred ccCceEEEecCCCCCC-Cc--CccccccCcEeecCcccc--c-ccch-hhhcCCCCCEEECCCCCCCCCcccCCCCCCcE
Confidence 1369999999999987 33 388999999999999996 3 6777 89999999999999999994348999999999
Q ss_pred EEccCCCCCC---ccccccCCCCCEEeCCCCCCCCccccc--ccCCCCCCCEEec
Q 022897 227 LDLRDCGITT---IQGLAKLKNLEALDLSWNNINGSLESQ--GLADLPNLKILDL 276 (290)
Q Consensus 227 L~l~~n~l~~---~~~l~~~~~L~~L~l~~n~l~~~i~~~--~l~~l~~L~~L~L 276 (290)
|++++|.+++ |..+..+++|+.|+|++|.+++..|.. .+..+++|+.|++
T Consensus 513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999998 467899999999999999998543321 2344789999875
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=1.1e-14 Score=124.26 Aligned_cols=89 Identities=20% Similarity=0.266 Sum_probs=75.5
Q ss_pred CCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCC-EEeCCCCCCCCcccccccCCCCCCCE
Q 022897 199 LTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLE-ALDLSWNNINGSLESQGLADLPNLKI 273 (290)
Q Consensus 199 ~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~-~L~l~~n~l~~~i~~~~l~~l~~L~~ 273 (290)
+++|+.|++++|.++ ...+|..+.+|+++++.+| ++. ...|..+++|+ .+++.+ .++ .|+..+|.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCE
Confidence 788999999998888 5567888999999999988 665 55688889999 999988 666 787777999999999
Q ss_pred EecCCCCCcccccccCC
Q 022897 274 LDLRDCGMTTIQGKIFK 290 (290)
Q Consensus 274 L~L~~n~l~~~~~~~f~ 290 (290)
|++++|+++.+.+.+|.
T Consensus 302 l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 302 VLATGDKITTLGDELFG 318 (329)
T ss_dssp EEECSSCCCEECTTTTC
T ss_pred EEeCCCccCccchhhhc
Confidence 99999999999888884
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=6.4e-15 Score=114.13 Aligned_cols=129 Identities=21% Similarity=0.166 Sum_probs=60.4
Q ss_pred CCCCCCcEEECCCCcCCCCchhhccCC-CCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccC
Q 022897 121 GSLKQLKILDLGCNFFNDSILPYLNTL-TSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANL 199 (290)
Q Consensus 121 ~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 199 (290)
..+.+|++|++++|.++. ++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+ ..++...+..+
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l---~~~~~~~~~~l 87 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI---CRIGEGLDQAL 87 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC---CEECSCHHHHC
T ss_pred CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc---cccCcchhhcC
Confidence 334445555555554442 222 2222 2555555555555431 2344455555555555553 12332223455
Q ss_pred CCccEEEcCCCCCC-CCc--CCCCCCCCcEEEccCCCCCC-cc----ccccCCCCCEEeCCCCCCC
Q 022897 200 TNLKELDLRGCGIT-TSQ--GLADLPNLKTLDLRDCGITT-IQ----GLAKLKNLEALDLSWNNIN 257 (290)
Q Consensus 200 ~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~-~~----~l~~~~~L~~L~l~~n~l~ 257 (290)
++|++|++++|.+. .+. .+..+++|++|++++|.++. +. .+..+++|+.|+++.|...
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 55555555555554 222 34445555555555555544 22 1455555666666555443
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1e-14 Score=112.98 Aligned_cols=132 Identities=23% Similarity=0.267 Sum_probs=108.9
Q ss_pred hccCCCCCCEEEccCCCCCCCcchhhcccCC-CCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcC-CC
Q 022897 143 YLNTLTSLTTLILYSNSIEGSGTMQGLANLR-YLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQG-LA 219 (290)
Q Consensus 143 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~-~~ 219 (290)
.+..+.+|++|++++|.++.. + .+..+. +|++|++++|.+ . .+ . .+..+++|++|++++|.++ .++. +.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~--~~~~~~~~L~~L~Ls~N~l--~-~~-~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-E--NLGATLDQFDAIDFSDNEI--R-KL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-C--CGGGGTTCCSEEECCSSCC--C-EE-C-CCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred hcCCcCCceEEEeeCCCCchh-H--HhhhcCCCCCEEECCCCCC--C-cc-c-ccccCCCCCEEECCCCcccccCcchhh
Confidence 356788999999999999853 2 344444 999999999996 3 34 2 7889999999999999998 4444 48
Q ss_pred CCCCCcEEEccCCCCCC-cc--ccccCCCCCEEeCCCCCCCCccccc---ccCCCCCCCEEecCCCCCcc
Q 022897 220 DLPNLKTLDLRDCGITT-IQ--GLAKLKNLEALDLSWNNINGSLESQ---GLADLPNLKILDLRDCGMTT 283 (290)
Q Consensus 220 ~l~~L~~L~l~~n~l~~-~~--~l~~~~~L~~L~l~~n~l~~~i~~~---~l~~l~~L~~L~L~~n~l~~ 283 (290)
.+++|++|++++|.++. +. .+..+++|++|++++|.++ .+|.. .+..+++|+.|++++|.+..
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 89999999999999988 43 6889999999999999998 56653 47789999999999997654
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=7.1e-14 Score=119.13 Aligned_cols=180 Identities=16% Similarity=0.158 Sum_probs=139.9
Q ss_pred ccCCCcCCC--------CCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccC
Q 022897 86 LLNMSLFHP--------FEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYS 157 (290)
Q Consensus 86 ~~~~~~~~~--------~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 157 (290)
.++...|.. +++|++|++.+ .+...... +|..+++|+.++++.|.+....+..|..+.++..+.+..
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~----aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDA----AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTT----TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-cccchhHH----HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 345566777 99999999998 77776665 899999999999999988766666777777777666554
Q ss_pred CCC-------CC-------------------Ccch--------------------------hhc-ccCCCCCeeeCCCCC
Q 022897 158 NSI-------EG-------------------SGTM--------------------------QGL-ANLRYLQVLDLSWNE 184 (290)
Q Consensus 158 n~~-------~~-------------------~~~~--------------------------~~~-~~l~~L~~L~l~~n~ 184 (290)
... .. ..+. ..+ ..+++|+.+++.+|.
T Consensus 158 ~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 158 SDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN 237 (329)
T ss_dssp THHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC
T ss_pred hhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC
Confidence 210 00 0000 000 127899999999988
Q ss_pred CCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCc-EEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCc
Q 022897 185 NITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLK-TLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGS 259 (290)
Q Consensus 185 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~-~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~ 259 (290)
...++...|..+++|+.|++..| +. ...+|..+.+|+ .+++.+ .++. ...|..+++|+.++++.|.++ .
T Consensus 238 ---i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~ 311 (329)
T 3sb4_A 238 ---ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-T 311 (329)
T ss_dssp ---CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-E
T ss_pred ---cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-c
Confidence 45677778999999999999998 65 677899999999 999998 6666 567999999999999999998 7
Q ss_pred ccccccCCCCCCCEEec
Q 022897 260 LESQGLADLPNLKILDL 276 (290)
Q Consensus 260 i~~~~l~~l~~L~~L~L 276 (290)
++..+|.++++|+.|..
T Consensus 312 I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 312 LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECTTTTCTTCCCCEEEC
T ss_pred cchhhhcCCcchhhhcc
Confidence 88877999999999864
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=1.9e-17 Score=131.01 Aligned_cols=131 Identities=31% Similarity=0.326 Sum_probs=64.7
Q ss_pred hccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCCCCcCCCCCC
Q 022897 143 YLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGITTSQGLADLP 222 (290)
Q Consensus 143 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~ 222 (290)
.+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+. .++. .+..+++|++|++++|.++..+.+..++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~---~l~~-~~~~~~~L~~L~L~~N~l~~l~~~~~l~ 115 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIK---KIEN-LDAVADTLEELWISYNQIASLSGIEKLV 115 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEEC---SCSS-HHHHHHHCSEEEEEEEECCCHHHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcc---cccc-hhhcCCcCCEEECcCCcCCcCCccccCC
Confidence 44455555555555555444 11 3444455555555555431 2333 3344455555555555555222344455
Q ss_pred CCcEEEccCCCCCC-c--cccccCCCCCEEeCCCCCCCCcccc---------cccCCCCCCCEEecCCCCCc
Q 022897 223 NLKTLDLRDCGITT-I--QGLAKLKNLEALDLSWNNINGSLES---------QGLADLPNLKILDLRDCGMT 282 (290)
Q Consensus 223 ~L~~L~l~~n~l~~-~--~~l~~~~~L~~L~l~~n~l~~~i~~---------~~l~~l~~L~~L~L~~n~l~ 282 (290)
+|++|++++|.+++ + ..+..+++|++|++++|.+++.+|. ..+..+++|+.|+ +|.++
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 55555555555555 1 2455566666666666655533322 1244556666664 44443
No 132
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.51 E-value=9e-16 Score=132.90 Aligned_cols=187 Identities=21% Similarity=0.222 Sum_probs=128.4
Q ss_pred CCCCcEEECCCCcccCccchhhhhhcCC-CCCCcEEECCCCcCCCCchhhcc-CCCCCCEEEccCCCCCCCcchh---hc
Q 022897 95 FEELQSLNLSDNWFRGFYENKAYDSFGS-LKQLKILDLGCNFFNDSILPYLN-TLTSLTTLILYSNSIEGSGTMQ---GL 169 (290)
Q Consensus 95 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~---~~ 169 (290)
++.|++|++++|.++......+...+.. .+.|++|+|++|.++......+. .+++|++|+|++|.+++..... .+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3578999999999987665555545553 37999999999998754444333 3578999999999987543221 12
Q ss_pred -ccCCCCCeeeCCCCCCCCCC--ccchhhhccCCCccEEEcCCCCCC------CCcCCCCCCCCcEEEccCCCCCC----
Q 022897 170 -ANLRYLQVLDLSWNENITSG--SLTRLGLANLTNLKELDLRGCGIT------TSQGLADLPNLKTLDLRDCGITT---- 236 (290)
Q Consensus 170 -~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~------~~~~~~~l~~L~~L~l~~n~l~~---- 236 (290)
...++|++|++++|.+.+.+ .+.. .+...++|++|+|++|.++ +...+...++|++|++++|.+++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 34678999999999863221 1222 4577889999999999987 24566777899999999999987
Q ss_pred --ccccccCCCCCEEeCCCCCCCCcccccccCCC---C--CCCEEe--cCCCCCcc
Q 022897 237 --IQGLAKLKNLEALDLSWNNINGSLESQGLADL---P--NLKILD--LRDCGMTT 283 (290)
Q Consensus 237 --~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l---~--~L~~L~--L~~n~l~~ 283 (290)
...+...++|++|+|++|.+++..... +..+ . .|+.+. +..+.++.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~-L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQV-LRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHH-HHHCC------CEEECCCC----CHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHH-HHHHhcCCCccchhhHhhhcCCccCH
Confidence 234556789999999999998433322 2222 2 266676 66666653
No 133
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.48 E-value=3e-15 Score=129.62 Aligned_cols=161 Identities=20% Similarity=0.237 Sum_probs=104.4
Q ss_pred CCCCcEEECCCCcCCCCchhhccC-----CCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCc--cchhh
Q 022897 123 LKQLKILDLGCNFFNDSILPYLNT-----LTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGS--LTRLG 195 (290)
Q Consensus 123 l~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~ 195 (290)
++.|++|++++|.++......+.. .++|++|+|++|.++..........+++|++|++++|.+.+.+. +.. .
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~-~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD-L 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH-H
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH-H
Confidence 456788888888876543333322 26788888888887654333333445678888888887522110 111 1
Q ss_pred h-ccCCCccEEEcCCCCCC------CCcCCCCCCCCcEEEccCCCCCC------ccccccCCCCCEEeCCCCCCCCc---
Q 022897 196 L-ANLTNLKELDLRGCGIT------TSQGLADLPNLKTLDLRDCGITT------IQGLAKLKNLEALDLSWNNINGS--- 259 (290)
Q Consensus 196 ~-~~~~~L~~L~l~~n~l~------~~~~~~~l~~L~~L~l~~n~l~~------~~~l~~~~~L~~L~l~~n~l~~~--- 259 (290)
+ ...++|++|+|++|.++ +...+...++|++|++++|.+++ ...+...++|++|+|++|.+++.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 2 24577888888888876 33444567788888888888876 34456677888888888888742
Q ss_pred -ccccccCCCCCCCEEecCCCCCcccc
Q 022897 260 -LESQGLADLPNLKILDLRDCGMTTIQ 285 (290)
Q Consensus 260 -i~~~~l~~l~~L~~L~L~~n~l~~~~ 285 (290)
+... +...++|++|+|++|.|+...
T Consensus 230 ~l~~~-L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 230 ALARA-AREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHHH-HHHCSSCCEEECTTSSCCHHH
T ss_pred HHHHH-HHhCCCCCEEeccCCCCCHHH
Confidence 2222 445677888888888887543
No 134
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.48 E-value=6.2e-15 Score=135.32 Aligned_cols=86 Identities=10% Similarity=0.019 Sum_probs=47.3
Q ss_pred CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCC----CchhhccCCCCCCEEEccCCCCCCCcchhhc
Q 022897 94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFND----SILPYLNTLTSLTTLILYSNSIEGSGTMQGL 169 (290)
Q Consensus 94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 169 (290)
.+++|++|++++|.+.+.....+...+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+ .+..+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~~~~ 239 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFF 239 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH--HHHHH
Confidence 567777777777766554322122233456677777777766652 233344556777777777766543 22334
Q ss_pred ccCCCCCeeeCC
Q 022897 170 ANLRYLQVLDLS 181 (290)
Q Consensus 170 ~~l~~L~~L~l~ 181 (290)
..+++|++|++.
T Consensus 240 ~~~~~L~~L~l~ 251 (592)
T 3ogk_B 240 KAAANLEEFCGG 251 (592)
T ss_dssp HHCTTCCEEEEC
T ss_pred hhhhHHHhhccc
Confidence 444444444443
No 135
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.46 E-value=2.3e-14 Score=131.58 Aligned_cols=153 Identities=19% Similarity=0.118 Sum_probs=89.2
Q ss_pred CCCCCCcEEECCCCcCCCC----chhhccCCCCCCEEEccCCCCCCC---cchhhcccCCCCCeeeCCCCCCCCCCccch
Q 022897 121 GSLKQLKILDLGCNFFNDS----ILPYLNTLTSLTTLILYSNSIEGS---GTMQGLANLRYLQVLDLSWNENITSGSLTR 193 (290)
Q Consensus 121 ~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 193 (290)
..+++|++|++++|.+++. ++..+..+++|++|++++|.+++. .....+..+++|++|++.+|.+ ..++.
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~---~~l~~ 237 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI---LELVG 237 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG---GGGHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH---HHHHH
Confidence 3567778888877776554 334455677888888887777622 1223455677888888888764 23554
Q ss_pred hhhccCCCccEEEcCCCCCC-----CCcCCCCCCCCcEEEccCCCCCC-ccccccCCCCCEEeCCCCCCCCcccccccCC
Q 022897 194 LGLANLTNLKELDLRGCGIT-----TSQGLADLPNLKTLDLRDCGITT-IQGLAKLKNLEALDLSWNNINGSLESQGLAD 267 (290)
Q Consensus 194 ~~~~~~~~L~~L~l~~n~l~-----~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~ 267 (290)
.+..+++|++|+++.+... ....+..+++|+.|+++++.... +..+..+++|++|++++|.+++......+..
T Consensus 238 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~ 316 (592)
T 3ogk_B 238 -FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK 316 (592)
T ss_dssp -HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred -HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence 6677777777777643221 22344555566666666544333 4444556666666666666553333222344
Q ss_pred CCCCCEEecC
Q 022897 268 LPNLKILDLR 277 (290)
Q Consensus 268 l~~L~~L~L~ 277 (290)
+++|++|+++
T Consensus 317 ~~~L~~L~L~ 326 (592)
T 3ogk_B 317 CPNLEVLETR 326 (592)
T ss_dssp CTTCCEEEEE
T ss_pred CcCCCEEecc
Confidence 5555555544
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=7.5e-13 Score=101.83 Aligned_cols=102 Identities=26% Similarity=0.213 Sum_probs=52.4
Q ss_pred CCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-C-CcCCCCCCCCcEE
Q 022897 150 LTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-T-SQGLADLPNLKTL 227 (290)
Q Consensus 150 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~-~~~~~~l~~L~~L 227 (290)
.+.+++++|.++. ++ ..+ .++|++|++++|.+ . .+++..+..+++|++|+|++|+++ + +..+..+++|++|
T Consensus 11 ~~~l~~s~n~l~~-ip-~~~--~~~l~~L~L~~N~i--~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VP-TGI--PTTTQVLYLYDNQI--T-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp TTEEECTTSCCSS-CC-SCC--CTTCSEEECCSSCC--C-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEeCCCCcCc-cC-ccC--CCCCcEEEcCCCcC--C-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 4566666666554 12 122 24566666666654 2 222224555556666666666555 2 2234555555555
Q ss_pred EccCCCCCC-c-cccccCCCCCEEeCCCCCCCC
Q 022897 228 DLRDCGITT-I-QGLAKLKNLEALDLSWNNING 258 (290)
Q Consensus 228 ~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~ 258 (290)
++++|.+++ + ..+..+++|++|+|++|.++.
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 555555555 2 235555555555555555543
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=1.2e-12 Score=101.12 Aligned_cols=100 Identities=23% Similarity=0.218 Sum_probs=52.0
Q ss_pred CEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCc-CCCCCCCCcEEE
Q 022897 151 TTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQ-GLADLPNLKTLD 228 (290)
Q Consensus 151 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~ 228 (290)
+.++++++.++. ++. .+. ++|++|++++|.+ . .+++..+..+++|++|+|++|+++ ++. .+..+++|++|+
T Consensus 15 ~~l~~~~n~l~~-iP~-~~~--~~L~~L~Ls~N~l--~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPA-GIP--TDKQRLWLNNNQI--T-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECCSSCCSS-CCS-CCC--TTCSEEECCSSCC--C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cEEEeCCCCCCc-cCC-CcC--CCCcEEEeCCCCc--c-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 456666666543 221 221 5566666666664 2 222224555566666666666555 222 234555566666
Q ss_pred ccCCCCCC-cc-ccccCCCCCEEeCCCCCCC
Q 022897 229 LRDCGITT-IQ-GLAKLKNLEALDLSWNNIN 257 (290)
Q Consensus 229 l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~ 257 (290)
+++|.+++ ++ .+..+++|++|+|++|.+.
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 66555555 22 2555555555555555555
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=1.5e-12 Score=100.07 Aligned_cols=85 Identities=29% Similarity=0.246 Sum_probs=72.2
Q ss_pred CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897 96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL 175 (290)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 175 (290)
++|++|++++|.+++..+. .|..+++|++|++++|.+++..+..|..+++|++|+|++|.+++. ++..+..+++|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred CCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCC
Confidence 6789999999999888776 788899999999999999877777778899999999999998864 44468888899
Q ss_pred CeeeCCCCCC
Q 022897 176 QVLDLSWNEN 185 (290)
Q Consensus 176 ~~L~l~~n~~ 185 (290)
++|++++|.+
T Consensus 105 ~~L~L~~N~~ 114 (170)
T 3g39_A 105 THIWLLNNPW 114 (170)
T ss_dssp CEEECCSSCB
T ss_pred CEEEeCCCCC
Confidence 9999999987
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=5.8e-16 Score=122.40 Aligned_cols=115 Identities=27% Similarity=0.239 Sum_probs=98.7
Q ss_pred hhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCCccccccCCC
Q 022897 167 QGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITTIQGLAKLKN 245 (290)
Q Consensus 167 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~ 245 (290)
..+..+++|++|++++|.+ . .++ .+..+++|++|++++|.++ ++..+..+++|++|++++|.+++.+.+..+++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l--~-~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~ 116 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNI--E-KIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVN 116 (198)
T ss_dssp HHHHHTTTCSEEECSEEEE--S-CCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHH
T ss_pred HHHhcCCCCCEEECCCCCC--c-ccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCC
Confidence 3788899999999999996 3 355 6888999999999999998 66656667899999999999999768889999
Q ss_pred CCEEeCCCCCCCCcccc-cccCCCCCCCEEecCCCCCcccccc
Q 022897 246 LEALDLSWNNINGSLES-QGLADLPNLKILDLRDCGMTTIQGK 287 (290)
Q Consensus 246 L~~L~l~~n~l~~~i~~-~~l~~l~~L~~L~L~~n~l~~~~~~ 287 (290)
|++|++++|.+++ ++. ..+..+++|++|++++|++++.+|.
T Consensus 117 L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 117 LRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp SSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 9999999999984 443 3388999999999999999887654
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.36 E-value=2.1e-11 Score=106.51 Aligned_cols=183 Identities=12% Similarity=0.166 Sum_probs=100.5
Q ss_pred CcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhc
Q 022897 90 SLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGL 169 (290)
Q Consensus 90 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 169 (290)
..|..+++|+.+++.+|.+...... +|. ...|+.+.+..+ +.......|.++++|+.+++..+ ++ .+....|
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~----aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF 245 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPAS----TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAF 245 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTT----TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTT
T ss_pred HHhhCcccCCeeecCCCcceEechh----hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccc
Confidence 3344444455555444444433332 332 244444444422 32222334445555555555443 11 1122233
Q ss_pred ccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-------CCcCCCCCCCCcEEEccCCCCCC--cccc
Q 022897 170 ANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-------TSQGLADLPNLKTLDLRDCGITT--IQGL 240 (290)
Q Consensus 170 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~~~l~~L~~L~l~~n~l~~--~~~l 240 (290)
.. .+|+.+.+..+ ...++...|..+++|+.+.+.++.+. ...++..+++|+.+.+.. .++. ...|
T Consensus 246 ~~-~~L~~i~lp~~----i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF 319 (401)
T 4fdw_A 246 RE-SGITTVKLPNG----VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLL 319 (401)
T ss_dssp TT-CCCSEEEEETT----CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTT
T ss_pred cc-CCccEEEeCCC----ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhh
Confidence 33 44555555222 23444446677777777777766543 345667777777777773 3544 4556
Q ss_pred ccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 241 AKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 241 ~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
..+++|+.+.|..+ ++ .+...+|.++ +|+.+++.+|.+....+.+|
T Consensus 320 ~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F 365 (401)
T 4fdw_A 320 GGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVW 365 (401)
T ss_dssp TTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred cCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccc
Confidence 77778888888555 54 5666667777 88888888887777666655
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.36 E-value=2.2e-14 Score=131.68 Aligned_cols=184 Identities=14% Similarity=0.129 Sum_probs=100.1
Q ss_pred CCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCC-chhhccCCCCCCEEEc-----------------
Q 022897 94 PFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDS-ILPYLNTLTSLTTLIL----------------- 155 (290)
Q Consensus 94 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l----------------- 155 (290)
.+++|++|++++|.+++... ...+..+++|++|++++| +... ++.....+++|++|++
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l---~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDL---VKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHH---HHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred hhCCCCEEEccCCCCCHHHH---HHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 46788888888887553321 113455666666666655 2211 1111123455555555
Q ss_pred -----------------cCCCCCCCcchhhcccCCCCCeeeCC--C----CCCCC---CCccchhhhccCCCccEEEcCC
Q 022897 156 -----------------YSNSIEGSGTMQGLANLRYLQVLDLS--W----NENIT---SGSLTRLGLANLTNLKELDLRG 209 (290)
Q Consensus 156 -----------------~~n~~~~~~~~~~~~~l~~L~~L~l~--~----n~~~~---~~~~~~~~~~~~~~L~~L~l~~ 209 (290)
+.+.+++.........+++|+.|++. + +.+.. ...++. .+..+++|++|++++
T Consensus 363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~-l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA-IVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH-HHHHCTTCCEEECCS
T ss_pred HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH-HHhhCCCccEEeecC
Confidence 44444332222112235666666665 2 22100 001111 245566677777755
Q ss_pred CCCC--CCcCCC-CCCCCcEEEccCCCCCC--cccc-ccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcc
Q 022897 210 CGIT--TSQGLA-DLPNLKTLDLRDCGITT--IQGL-AKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTT 283 (290)
Q Consensus 210 n~l~--~~~~~~-~l~~L~~L~l~~n~l~~--~~~l-~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~ 283 (290)
.++ ....+. .+++|++|++++|.+++ +..+ ..+++|+.|++++|.+++.........+++|++|++++|+++.
T Consensus 442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred -cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 333 122222 26778888888888766 3333 5678888888888888644444435567888888888887743
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.35 E-value=3.7e-14 Score=130.17 Aligned_cols=175 Identities=21% Similarity=0.134 Sum_probs=81.4
Q ss_pred CCCCcEEECCCC-cccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhc----cCCCCCCEEEccCCC--CCCCcchh
Q 022897 95 FEELQSLNLSDN-WFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYL----NTLTSLTTLILYSNS--IEGSGTMQ 167 (290)
Q Consensus 95 ~~~L~~L~l~~n-~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~L~l~~n~--~~~~~~~~ 167 (290)
+++|++|++++| .++... +...+..+++|++|++++|.+++..+..+ ..+++|++|++++|. +.......
T Consensus 129 ~~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDG---LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER 205 (594)
T ss_dssp CTTCCEEEEESCEEEEHHH---HHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHH---HHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence 455666666555 222211 11122345666666666665544333222 244566666666654 21111111
Q ss_pred hcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCC--------------------------C------CC
Q 022897 168 GLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGI--------------------------T------TS 215 (290)
Q Consensus 168 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l--------------------------~------~~ 215 (290)
....+++|++|++.+|.. ...++. .+..+++|++|+++.+.. . .+
T Consensus 206 l~~~~~~L~~L~L~~~~~--~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~ 282 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNRAVP--LEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP 282 (594)
T ss_dssp HHHHCTTCCEEECCTTSC--HHHHHH-HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGG
T ss_pred HHHhCCCCcEEecCCCCc--HHHHHH-HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHH
Confidence 223456666666666532 222333 455556666665443321 0 11
Q ss_pred cCCCCCCCCcEEEccCCCCCC---ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEec
Q 022897 216 QGLADLPNLKTLDLRDCGITT---IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDL 276 (290)
Q Consensus 216 ~~~~~l~~L~~L~l~~n~l~~---~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L 276 (290)
..+..+++|++|++++|.+++ ...+..+++|++|++++| +++.........+++|++|+|
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence 111134566666666666554 122445566666666655 322212221234566666666
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=9.7e-12 Score=106.59 Aligned_cols=89 Identities=20% Similarity=0.144 Sum_probs=78.0
Q ss_pred CCCCCCCcEEECCC-CcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcc
Q 022897 92 FHPFEELQSLNLSD-NWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLA 170 (290)
Q Consensus 92 ~~~~~~L~~L~l~~-n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 170 (290)
+..+++|++|+|++ |.+.+..+. .|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++. ++..+.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~ 101 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQ 101 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTC
T ss_pred CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcc
Confidence 77788999999996 999988776 899999999999999999998888999999999999999999864 444565
Q ss_pred cCCCCCeeeCCCCCCC
Q 022897 171 NLRYLQVLDLSWNENI 186 (290)
Q Consensus 171 ~l~~L~~L~l~~n~~~ 186 (290)
.+. |+.|++.+|.+.
T Consensus 102 ~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCC-CCEEECCSSCCC
T ss_pred cCC-ceEEEeeCCCcc
Confidence 555 999999999973
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=1.6e-11 Score=94.78 Aligned_cols=85 Identities=25% Similarity=0.223 Sum_probs=56.8
Q ss_pred CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCC
Q 022897 96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYL 175 (290)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 175 (290)
++|++|++++|.+.+..+. .|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++. ++..+..+++|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred CCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCC
Confidence 5677777777777766555 666777777777777777655444556677777777777777643 33346666777
Q ss_pred CeeeCCCCCC
Q 022897 176 QVLDLSWNEN 185 (290)
Q Consensus 176 ~~L~l~~n~~ 185 (290)
++|++++|.+
T Consensus 108 ~~L~L~~N~~ 117 (174)
T 2r9u_A 108 THIYLYNNPW 117 (174)
T ss_dssp SEEECCSSCB
T ss_pred CEEEeCCCCc
Confidence 7777777765
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.32 E-value=7e-11 Score=103.15 Aligned_cols=160 Identities=14% Similarity=0.144 Sum_probs=105.4
Q ss_pred hcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhcc
Q 022897 119 SFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLAN 198 (290)
Q Consensus 119 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 198 (290)
+|..+++|+.++++.|.++......|. +.+|+.+.+..+ +. .+....|..+++|+.+++..+ ...+....|..
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~----l~~I~~~aF~~ 247 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN----VSTIGQEAFRE 247 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT----CCEECTTTTTT
T ss_pred HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC----ccCcccccccc
Confidence 455555555555555555433233333 455555555533 22 223345666777777777654 23444445555
Q ss_pred CCCccEEEcCCCCCC--CCcCCCCCCCCcEEEccCCCCC-----C--ccccccCCCCCEEeCCCCCCCCcccccccCCCC
Q 022897 199 LTNLKELDLRGCGIT--TSQGLADLPNLKTLDLRDCGIT-----T--IQGLAKLKNLEALDLSWNNINGSLESQGLADLP 269 (290)
Q Consensus 199 ~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L~l~~n~l~-----~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~ 269 (290)
.+|+.+.+..+ ++ ...++..+++|+.+.+.+|.+. . ...|..+++|+.+++.+ .++ .++..+|.+++
T Consensus 248 -~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~ 323 (401)
T 4fdw_A 248 -SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNR 323 (401)
T ss_dssp -CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCC
T ss_pred -CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCC
Confidence 67777777443 44 4677889999999999988775 2 55688899999999984 466 78887799999
Q ss_pred CCCEEecCCCCCcccccccCC
Q 022897 270 NLKILDLRDCGMTTIQGKIFK 290 (290)
Q Consensus 270 ~L~~L~L~~n~l~~~~~~~f~ 290 (290)
+|+.+.|..+ ++.+.+.+|.
T Consensus 324 ~L~~l~lp~~-l~~I~~~aF~ 343 (401)
T 4fdw_A 324 KVTQLTIPAN-VTQINFSAFN 343 (401)
T ss_dssp SCCEEEECTT-CCEECTTSSS
T ss_pred CccEEEECcc-ccEEcHHhCC
Confidence 9999999654 7777777774
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=1.2e-10 Score=99.67 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=68.0
Q ss_pred EEEccCC-CCCCCcchhhcccCCCCCeeeCCC-CCCCCCCccchhhhccCCCccEEEcCCCCCC--CCcCCCCCCCCcEE
Q 022897 152 TLILYSN-SIEGSGTMQGLANLRYLQVLDLSW-NENITSGSLTRLGLANLTNLKELDLRGCGIT--TSQGLADLPNLKTL 227 (290)
Q Consensus 152 ~L~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~l~~L~~L 227 (290)
.++++++ .++. +| . +..+++|++|+|++ |.+ ..++...+..+++|++|+|++|.++ .+..|..+++|++|
T Consensus 12 ~v~~~~~n~l~~-ip-~-l~~~~~L~~L~l~~~n~l---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTRDGALDS-LH-H-LPGAENLTELYIENQQHL---QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp CEECCSSCCCTT-TT-T-SCSCSCCSEEECCSCSSC---CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred EEEcCCCCCCCc-cC-C-CCCCCCeeEEEccCCCCC---CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 4577776 6664 33 3 77777788888875 764 4455446777778888888888777 44566777778888
Q ss_pred EccCCCCCC-cc-ccccCCCCCEEeCCCCCCCC
Q 022897 228 DLRDCGITT-IQ-GLAKLKNLEALDLSWNNING 258 (290)
Q Consensus 228 ~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~ 258 (290)
+|++|.|++ ++ .+..++ |+.|+|.+|.+..
T Consensus 86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred eCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 888887777 33 333343 7777777777764
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=2.6e-10 Score=97.97 Aligned_cols=182 Identities=19% Similarity=0.230 Sum_probs=93.5
Q ss_pred CCCCCCCcEEECCCCcccC-----ccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCCCCcch
Q 022897 92 FHPFEELQSLNLSDNWFRG-----FYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIEGSGTM 166 (290)
Q Consensus 92 ~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 166 (290)
...+++|+.|.+.+..... .....+...+..++.|+.|.|+++.-. .++. + .+++|++|++..|.+.....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l- 210 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV- 210 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH-
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH-
Confidence 3456677777775543211 000012224456677777777666311 1222 2 36777777777777654322
Q ss_pred hhcc--cCCCCCeeeCCCC--CCCCCC---ccch-hhhccCCCccEEEcCCCCCC--CCcCC---CCCCCCcEEEccCCC
Q 022897 167 QGLA--NLRYLQVLDLSWN--ENITSG---SLTR-LGLANLTNLKELDLRGCGIT--TSQGL---ADLPNLKTLDLRDCG 233 (290)
Q Consensus 167 ~~~~--~l~~L~~L~l~~n--~~~~~~---~~~~-~~~~~~~~L~~L~l~~n~l~--~~~~~---~~l~~L~~L~l~~n~ 233 (290)
..+. .+++|+.|+|..+ ...... .+.. .....+++|++|++.+|.+. ....+ ..+++|++|+++.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 1222 5677777776421 110000 1111 01124667777777777665 11111 245677777777777
Q ss_pred CCC------ccccccCCCCCEEeCCCCCCCCcccccccCC-CCCCCEEecCCCC
Q 022897 234 ITT------IQGLAKLKNLEALDLSWNNINGSLESQGLAD-LPNLKILDLRDCG 280 (290)
Q Consensus 234 l~~------~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~-l~~L~~L~L~~n~ 280 (290)
+++ +..+..+++|+.|++++|.+++..... +.. + ...++++.++
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~-l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE-LQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH-HHHHC--CSEEECCSBC
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH-HHHHc--CCEEEecCCc
Confidence 765 122345677777777777766433222 221 2 2456666654
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.93 E-value=4.9e-10 Score=96.27 Aligned_cols=160 Identities=18% Similarity=0.160 Sum_probs=105.0
Q ss_pred hcCCCCCCcEEECCCCcC---------CCCchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCC
Q 022897 119 SFGSLKQLKILDLGCNFF---------NDSILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSG 189 (290)
Q Consensus 119 ~l~~l~~L~~L~l~~n~l---------~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 189 (290)
+...+++|+.|.+..... .+.+...+..+|+|+.|++++|.-. ..+ .+ .+++|++|++..+.+ ..
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l--~l~-~~-~~~~L~~L~L~~~~l--~~ 207 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL--SIG-KK-PRPNLKSLEIISGGL--PD 207 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC--BCC-SC-BCTTCSEEEEECSBC--CH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc--eec-cc-cCCCCcEEEEecCCC--Ch
Confidence 455678889998865432 1234555677899999999887311 111 23 378999999988775 22
Q ss_pred ccch-hhhccCCCccEEEcCC--CC------CC-CCcCC--CCCCCCcEEEccCCCCCC--cccc---ccCCCCCEEeCC
Q 022897 190 SLTR-LGLANLTNLKELDLRG--CG------IT-TSQGL--ADLPNLKTLDLRDCGITT--IQGL---AKLKNLEALDLS 252 (290)
Q Consensus 190 ~~~~-~~~~~~~~L~~L~l~~--n~------l~-~~~~~--~~l~~L~~L~l~~n~l~~--~~~l---~~~~~L~~L~l~ 252 (290)
.... .....+++|++|+|+. +. +. +...+ ..+++|++|++.+|.+.+ ...+ ..+++|++|+|+
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 2111 1223789999999853 21 11 11222 357899999999999876 2222 357899999999
Q ss_pred CCCCCCcccccc---cCCCCCCCEEecCCCCCccc
Q 022897 253 WNNINGSLESQG---LADLPNLKILDLRDCGMTTI 284 (290)
Q Consensus 253 ~n~l~~~i~~~~---l~~l~~L~~L~L~~n~l~~~ 284 (290)
.|.+.+..+..+ +..+++|+.|+|++|.|+..
T Consensus 288 ~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp SSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 999885322221 34578999999999988754
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.90 E-value=8.8e-10 Score=85.75 Aligned_cols=122 Identities=17% Similarity=0.102 Sum_probs=73.5
Q ss_pred cCCCCCCCcEEECCCC-cccCccchhhhhhcCCCCCCcEEECCCCcCCCC----chhhccCCCCCCEEEccCCCCCCCc-
Q 022897 91 LFHPFEELQSLNLSDN-WFRGFYENKAYDSFGSLKQLKILDLGCNFFNDS----ILPYLNTLTSLTTLILYSNSIEGSG- 164 (290)
Q Consensus 91 ~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~- 164 (290)
.+...+.|++|+|++| .+.......+.+.+...+.|++|+|++|.+... +...+...++|++|+|++|.+.+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455677888888877 776554445555667777788888887777543 2333445567777777777776432
Q ss_pred --chhhcccCCCCCeeeC--CCCCCCCCCc--cchhhhccCCCccEEEcCCCCCC
Q 022897 165 --TMQGLANLRYLQVLDL--SWNENITSGS--LTRLGLANLTNLKELDLRGCGIT 213 (290)
Q Consensus 165 --~~~~~~~l~~L~~L~l--~~n~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~ 213 (290)
....+...+.|++|++ ++|.+.+.+. +.. .+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence 1234555667777777 6666522211 111 3445566666666666543
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.86 E-value=4e-10 Score=92.30 Aligned_cols=153 Identities=16% Similarity=0.101 Sum_probs=91.6
Q ss_pred CCCCCCceEeccccCcEEeeccccc---ccccccc---------------cccccccCCCcCCCCCCCcE--EECCCCcc
Q 022897 49 CCDDWEGVKCNATTRRVMQLSLTYT---ERLNYYD---------------RTSASLLNMSLFHPFEELQS--LNLSDNWF 108 (290)
Q Consensus 49 ~c~~w~gv~c~~~~~~v~~l~l~~~---~~l~~l~---------------~~~~~~~~~~~~~~~~~L~~--L~l~~n~l 108 (290)
.| .|.|+.|+....+|..+..++. .....+. +...+.++.+.+...+.|.. ++++.|..
T Consensus 77 l~-~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~ 155 (267)
T 3rw6_A 77 LK-AVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR 155 (267)
T ss_dssp HH-HTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred HH-hcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence 46 8999999865445544433331 1000010 11122334444555555655 55666643
Q ss_pred cCccchhhhhhcCCCCCCcEEECCCCcCCC--CchhhccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCC
Q 022897 109 RGFYENKAYDSFGSLKQLKILDLGCNFFND--SILPYLNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENI 186 (290)
Q Consensus 109 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 186 (290)
... +..+......++.|++|+|++|.+++ .++..+..+++|+.|+|++|.+++......+..+ +|++|++.+|.+
T Consensus 156 ~~~-~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl- 232 (267)
T 3rw6_A 156 SCM-AATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSL- 232 (267)
T ss_dssp HHH-HHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTT-
T ss_pred HHH-HHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcC-
Confidence 221 11111122467899999999999987 4456667899999999999999874222334444 899999999987
Q ss_pred CCCccc------hhhhccCCCccEEE
Q 022897 187 TSGSLT------RLGLANLTNLKELD 206 (290)
Q Consensus 187 ~~~~~~------~~~~~~~~~L~~L~ 206 (290)
.+.++ ...+..+++|+.|+
T Consensus 233 -~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 233 -CDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp -GGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred -ccccCcchhHHHHHHHHCcccCeEC
Confidence 44333 12467788888775
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.82 E-value=1.6e-09 Score=84.27 Aligned_cols=43 Identities=12% Similarity=-0.016 Sum_probs=22.6
Q ss_pred hcCCCCCCcEEECCCC-cCCCC----chhhccCCCCCCEEEccCCCCC
Q 022897 119 SFGSLKQLKILDLGCN-FFNDS----ILPYLNTLTSLTTLILYSNSIE 161 (290)
Q Consensus 119 ~l~~l~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~~~ 161 (290)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 4555666666666666 55432 2233344455555555555554
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.61 E-value=3.7e-09 Score=86.57 Aligned_cols=79 Identities=29% Similarity=0.368 Sum_probs=55.6
Q ss_pred ccCCCccEEEcCCCCCCC----CcCCCCCCCCcEEEccCCCCCCccccccCC--CCCEEeCCCCCCCCcccc------cc
Q 022897 197 ANLTNLKELDLRGCGITT----SQGLADLPNLKTLDLRDCGITTIQGLAKLK--NLEALDLSWNNINGSLES------QG 264 (290)
Q Consensus 197 ~~~~~L~~L~l~~n~l~~----~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~--~L~~L~l~~n~l~~~i~~------~~ 264 (290)
.++++|+.|+|++|.++. +..+..+++|+.|+|++|.+++...+..+. +|++|+|++|.+.+.+|. ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 567788888888888773 233346788888888888888755455444 788888888888765542 23
Q ss_pred cCCCCCCCEEe
Q 022897 265 LADLPNLKILD 275 (290)
Q Consensus 265 l~~l~~L~~L~ 275 (290)
+..+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56678888775
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.54 E-value=2.3e-06 Score=74.37 Aligned_cols=182 Identities=14% Similarity=0.138 Sum_probs=96.3
Q ss_pred CCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCCCCC------
Q 022897 88 NMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSIE------ 161 (290)
Q Consensus 88 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~------ 161 (290)
....|..+.+|+.+.+.++. ...... .|..+.+|+.+.+..+ +.......|..+..|+.+.+..+...
T Consensus 154 ~~~aF~~c~~L~~i~l~~~~-~~I~~~----~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~ 227 (394)
T 4fs7_A 154 GDEAFATCESLEYVSLPDSM-ETLHNG----LFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFAL 227 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTC-CEECTT----TTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTT
T ss_pred chhhhcccCCCcEEecCCcc-ceeccc----cccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhc
Confidence 34456777778888776542 222232 5667777777777554 22122233444445544444332110
Q ss_pred --------------CCcchhhcccCCCCCeeeCCCCCCCC-----------------CCccchhhhccCCCccEEEcCCC
Q 022897 162 --------------GSGTMQGLANLRYLQVLDLSWNENIT-----------------SGSLTRLGLANLTNLKELDLRGC 210 (290)
Q Consensus 162 --------------~~~~~~~~~~l~~L~~L~l~~n~~~~-----------------~~~~~~~~~~~~~~L~~L~l~~n 210 (290)
..+....+..+..|+.+.+..+...- ...++...+..+.+|+.+.+..+
T Consensus 228 ~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 228 SKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp TTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT
T ss_pred ccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc
Confidence 00111234455666666665442100 00122223445556666666544
Q ss_pred CCC--CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCC
Q 022897 211 GIT--TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDC 279 (290)
Q Consensus 211 ~l~--~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n 279 (290)
+. ...++..+.+|+.+++..+ ++. ..+|..+.+|+.+.+..+ ++ .+...+|.++++|+.+++..+
T Consensus 308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence 33 3455667777777777543 443 445666777777777665 44 566666777777777777543
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.42 E-value=5.7e-06 Score=71.85 Aligned_cols=60 Identities=17% Similarity=0.295 Sum_probs=31.4
Q ss_pred CCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCC
Q 022897 217 GLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDC 279 (290)
Q Consensus 217 ~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n 279 (290)
++..+.+|+.+.+..+ ++. ..+|..+.+|+.+.+..+ ++ .|...+|.++.+|+.+++.++
T Consensus 306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSC
T ss_pred eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCc
Confidence 4445555555555433 222 334555556666666433 33 455555666666666666554
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.31 E-value=6.4e-06 Score=71.55 Aligned_cols=63 Identities=13% Similarity=0.224 Sum_probs=33.0
Q ss_pred cCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEc
Q 022897 87 LNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLIL 155 (290)
Q Consensus 87 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 155 (290)
+....|..+.+|+++.+..+ ++..... +|.++.+|+.+++..+ ++......|..+..|+.+.+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~----aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~ 124 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEF----AFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILL 124 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTT----TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchh----HhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcc
Confidence 34455666667777776543 4443333 6666677777766543 22222334444555544443
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.25 E-value=4.7e-05 Score=65.56 Aligned_cols=137 Identities=16% Similarity=0.171 Sum_probs=89.8
Q ss_pred ccCCCCCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccCCCccEEEcCCCCCC-CCcCCCCCC
Q 022897 144 LNTLTSLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANLTNLKELDLRGCGIT-TSQGLADLP 222 (290)
Q Consensus 144 l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~ 222 (290)
+..+..|+.+.+..+- . .+....+..+..|+.+.+..+ ...+....+..+.+|+.+.+..+--. ...++..+.
T Consensus 213 f~~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~----v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~ 286 (379)
T 4h09_A 213 FSYGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN----VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCS 286 (379)
T ss_dssp TTTCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT----CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCT
T ss_pred cccccccceeeeccce-e-EEccccccCCccceEEEcCCC----ccEeCccccceeehhccccccccceecccccccccc
Confidence 3345556666554331 1 112235566777777777554 22344446777778888888655323 455677888
Q ss_pred CCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCCCEEecCCCCCcccccccC
Q 022897 223 NLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNLKILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 223 ~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~f 289 (290)
+|+.+.+.++.++. ...|..+.+|+.+.|..+ ++ .|...+|.++.+|+.+.+..+ ++.+...+|
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF 352 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS-ITLIESGAF 352 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence 88888888887776 456778888888888655 55 677767888888888888654 666655555
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=4.4e-07 Score=69.17 Aligned_cols=85 Identities=20% Similarity=0.246 Sum_probs=60.0
Q ss_pred CCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCCc-CCCCchhhccCC----CCCCEEEccCCC-CCCCcchhhc
Q 022897 96 EELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCNF-FNDSILPYLNTL----TSLTTLILYSNS-IEGSGTMQGL 169 (290)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l----~~L~~L~l~~n~-~~~~~~~~~~ 169 (290)
..|+.|+++++.++...-. .+..+++|++|+|++|. +++.....++.+ ++|++|++++|. +++.... .+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-AL 135 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HG
T ss_pred ceEeEEeCcCCCccHHHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HH
Confidence 3588888888876654333 56778888888888874 665555556554 468888888875 6655443 56
Q ss_pred ccCCCCCeeeCCCCCC
Q 022897 170 ANLRYLQVLDLSWNEN 185 (290)
Q Consensus 170 ~~l~~L~~L~l~~n~~ 185 (290)
..+++|++|+++++..
T Consensus 136 ~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPG 151 (176)
T ss_dssp GGCTTCCEEEEESCTT
T ss_pred hcCCCCCEEECCCCCC
Confidence 6788888888888764
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.20 E-value=0.00013 Score=63.25 Aligned_cols=91 Identities=15% Similarity=0.284 Sum_probs=51.4
Q ss_pred hhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCC
Q 022897 195 GLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNL 271 (290)
Q Consensus 195 ~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L 271 (290)
.|..+..|+.+.+..+... ...++..+.+|+.+.+.. .++. ...|..+.+|+.++|..+ ++ .|...+|.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCC
Confidence 4555566666666554444 445556666666666642 2333 334556666666666543 33 4555556666666
Q ss_pred CEEecCCCCCcccccccC
Q 022897 272 KILDLRDCGMTTIQGKIF 289 (290)
Q Consensus 272 ~~L~L~~n~l~~~~~~~f 289 (290)
+.+.|..+ ++.+...+|
T Consensus 337 ~~i~ip~s-v~~I~~~aF 353 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAF 353 (394)
T ss_dssp CEEEECTT-CCBCCGGGG
T ss_pred CEEEECcc-cCEEhHhHh
Confidence 66666433 555555554
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.20 E-value=9.3e-05 Score=63.70 Aligned_cols=93 Identities=24% Similarity=0.233 Sum_probs=67.1
Q ss_pred hhccCCCccEEEcCCCCCC-CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCCCcccccccCCCCCC
Q 022897 195 GLANLTNLKELDLRGCGIT-TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNINGSLESQGLADLPNL 271 (290)
Q Consensus 195 ~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~~i~~~~l~~l~~L 271 (290)
.+..+..|+.+.+..+--. ...++..+.+|+.+.+..+ ++. ...+..+.+|+.+.+.++.++ .++..+|.++.+|
T Consensus 235 ~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCCccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCC
Confidence 4555666777777655222 4556677778888887654 333 456778889999999888887 7887779999999
Q ss_pred CEEecCCCCCcccccccCC
Q 022897 272 KILDLRDCGMTTIQGKIFK 290 (290)
Q Consensus 272 ~~L~L~~n~l~~~~~~~f~ 290 (290)
+.+.|..+ ++.+...+|+
T Consensus 313 ~~i~lp~~-l~~I~~~aF~ 330 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFK 330 (379)
T ss_dssp CEEECCTT-CCEECTTTTT
T ss_pred CEEEcCcc-ccEEHHHHhh
Confidence 99999754 7777777764
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=8.4e-07 Score=67.60 Aligned_cols=82 Identities=26% Similarity=0.382 Sum_probs=35.0
Q ss_pred CCCEEEccCCCCCCCcchhhcccCCCCCeeeCCCCCCCCCCccchhhhccC----CCccEEEcCCCC-CC--CCcCCCCC
Q 022897 149 SLTTLILYSNSIEGSGTMQGLANLRYLQVLDLSWNENITSGSLTRLGLANL----TNLKELDLRGCG-IT--TSQGLADL 221 (290)
Q Consensus 149 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~----~~L~~L~l~~n~-l~--~~~~~~~l 221 (290)
.|++|++++|.++..... .+..+++|++|+|++|...+...+. .+..+ ++|++|+|++|. ++ ....+..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~--~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLE--RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHH--HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred eEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHH--HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 344444444444433332 3344445555555554421111111 22222 245555555553 43 12223445
Q ss_pred CCCcEEEccCCC
Q 022897 222 PNLKTLDLRDCG 233 (290)
Q Consensus 222 ~~L~~L~l~~n~ 233 (290)
++|++|++++|.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 566666666653
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.08 E-value=7.1e-06 Score=63.68 Aligned_cols=119 Identities=12% Similarity=0.099 Sum_probs=79.1
Q ss_pred CCCCCCCcEEECCCC-cccCccchhhhhhcCCCCCCcEEECCCCcCCCC----chhhccCCCCCCEEEccCCCCCCCcc-
Q 022897 92 FHPFEELQSLNLSDN-WFRGFYENKAYDSFGSLKQLKILDLGCNFFNDS----ILPYLNTLTSLTTLILYSNSIEGSGT- 165 (290)
Q Consensus 92 ~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~- 165 (290)
+.+-+.|++|+|+++ .+.......+.+.+...+.|++|+|++|.+... +...+...++|++|+|+.|.+.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 445577889999885 776555455666788888899999999888643 34445567888899999888875432
Q ss_pred --hhhcccCCCCCeeeCCCCCCCCCCc-----cchhhhccCCCccEEEcCCCC
Q 022897 166 --MQGLANLRYLQVLDLSWNENITSGS-----LTRLGLANLTNLKELDLRGCG 211 (290)
Q Consensus 166 --~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~~~~~L~~L~l~~n~ 211 (290)
.+.+..-+.|++|+|.++.....+. +.. .+...+.|+.|+++.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCC
Confidence 2345555678888887542101231 222 45666778888777654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.94 E-value=7.9e-06 Score=63.40 Aligned_cols=43 Identities=9% Similarity=0.059 Sum_probs=22.3
Q ss_pred hcCCCCCCcEEECCCC-cCCCC----chhhccCCCCCCEEEccCCCCC
Q 022897 119 SFGSLKQLKILDLGCN-FFNDS----ILPYLNTLTSLTTLILYSNSIE 161 (290)
Q Consensus 119 ~l~~l~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~~~ 161 (290)
.+..-+.|++|+|+++ .+... +...+...++|+.|+|++|.+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 4455566666666654 44321 2333444555555555555554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.27 E-value=0.00052 Score=49.53 Aligned_cols=52 Identities=21% Similarity=0.105 Sum_probs=32.6
Q ss_pred EEEcCCCCCC---CCcCCCCCCCCcEEEccCCCCCC--ccccccCCCCCEEeCCCCCCC
Q 022897 204 ELDLRGCGIT---TSQGLADLPNLKTLDLRDCGITT--IQGLAKLKNLEALDLSWNNIN 257 (290)
Q Consensus 204 ~L~l~~n~l~---~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~ 257 (290)
.++.+++.++ +|.. -..+|++|+|++|.|+. ...|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666664 2322 22357777777777776 344666777777777777664
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.28 E-value=0.012 Score=42.28 Aligned_cols=35 Identities=26% Similarity=0.105 Sum_probs=14.4
Q ss_pred CcEEECCCCcCCCCchhhccCCCCCCEEEccCCCC
Q 022897 126 LKILDLGCNFFNDSILPYLNTLTSLTTLILYSNSI 160 (290)
Q Consensus 126 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 160 (290)
|++|+|++|.++...+..|..+++|++|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 34444444444433333333444444444444433
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.98 E-value=6.9 Score=26.15 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=30.4
Q ss_pred cccccCCCcCCCCCCCcEEECCCCcccCccchhhhhhcCCCCCCcEEECCCC
Q 022897 83 SASLLNMSLFHPFEELQSLNLSDNWFRGFYENKAYDSFGSLKQLKILDLGCN 134 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~l~~L~~L~l~~n 134 (290)
++..+....|..+.+|+++.|..+ ++.+... +|..+.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~----aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDG----MFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTT----SSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHH----HHhccCCccEEEEcCC
Confidence 344555667777888888877654 4444343 6777777777777543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=47.59 E-value=24 Score=23.43 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=27.3
Q ss_pred hcCCCCCCcEEECCCCcCCCCchhhccCCCCCCEEEccCC
Q 022897 119 SFGSLKQLKILDLGCNFFNDSILPYLNTLTSLTTLILYSN 158 (290)
Q Consensus 119 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 158 (290)
+|.++..|+.+.|..+ ++......|.+|.+|+.+.+...
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 7788888888888654 33344556777888888877653
Done!