BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022898
(290 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7F8R0|C3H14_ORYSJ Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa
subsp. japonica GN=Os02g0194200 PE=2 SV=1
Length = 300
Score = 332 bits (852), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 188/297 (63%), Positives = 209/297 (70%), Gaps = 15/297 (5%)
Query: 4 RKRTKPETGINANGVFKKSKHESES---GVGSKSKPCTKFFSTAGCPFGESCHFLHYFPG 60
RKR KP+ ANG K ESES GVGSKSKPCTKFFST+GCPFGE CHFLH+FPG
Sbjct: 6 RKRGKPD---GANGAGGKRARESESFQTGVGSKSKPCTKFFSTSGCPFGEGCHFLHHFPG 62
Query: 61 GYNAVAQMMNL--PQAVPAPSRNMAVPPPASNGPTV--VKSRMCNRLNSAEGCKFGDKCH 116
GY AVA+M NL P P P R M + +GP VK+R+CN+ N+AEGCK+GDKCH
Sbjct: 63 GYQAVAKMTNLGGPAIAPPPGR-MPMGNAVPDGPPTPTVKTRLCNKYNTAEGCKWGDKCH 121
Query: 117 FAHGEWELGKPIAISHDDPRAFGAVP-GRMGGRYEPPPAPGPAASFGASATAKISVDASL 175
FAHGE ELGKP+ + P G P G P PA ASFGASATAKISVDASL
Sbjct: 122 FAHGERELGKPMLMDSSMPPPMGPRPTGHFAPPPMPSPAMSTPASFGASATAKISVDASL 181
Query: 176 AGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRI 235
AG IIG+GGVN+KQI R TGAKL+IRDHE+D NL+NIELEG+F+QIK ASAMVRELIV I
Sbjct: 182 AGGIIGRGGVNTKQISRVTGAKLAIRDHESDTNLKNIELEGTFDQIKNASAMVRELIVSI 241
Query: 236 G---PAHAKNPATAGSAAHPLSSNFKTKLCGNFAKGSCTFGDRCHFAHGAAELRKTA 289
G P K P SNFKTKLC NF KGSCTFGDRCHFAHG ELRK+A
Sbjct: 242 GGGAPPQGKKPVGGSHRGGGPGSNFKTKLCENFTKGSCTFGDRCHFAHGENELRKSA 298
Score = 38.9 bits (89), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 96 KSRMCNRLNSAEGCKFGDKCHFAHGEWELGKPIA 129
K+++C C FGD+CHFAHGE EL K A
Sbjct: 267 KTKLCENFTKGS-CTFGDRCHFAHGENELRKSAA 299
>sp|Q69XQ3|C3H44_ORYSJ Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa
subsp. japonica GN=Os06g0618100 PE=2 SV=1
Length = 295
Score = 328 bits (842), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 180/292 (61%), Positives = 209/292 (71%), Gaps = 17/292 (5%)
Query: 5 KRTKPETGINANGVFKKSKHESESGVGSKSKPCTKFFSTAGCPFGESCHFLHYFPGGYNA 64
KR PE G N ++ S+ GVGSK KPCTKFFST+GCPFG SCHFLH FPGGY A
Sbjct: 7 KRAAPE-GTNGAAKRARASESSQVGVGSKLKPCTKFFSTSGCPFGSSCHFLHNFPGGYQA 65
Query: 65 VAQMMNLP-QAVPAPSRNMAVPPPASNGP--TVVKSRMCNRLNSAEGCKFGDKCHFAHGE 121
A+M + AV AP M + P A NGP + VK+RMCN+ N+AEGCK+G KCHFAHGE
Sbjct: 66 AAKMTSHGGTAVAAPPGRMPLGPGAPNGPPTSSVKTRMCNKYNTAEGCKWGSKCHFAHGE 125
Query: 122 WELGKPIAISHDDPRAFGAVPGRMGGRYEPPPAPGP----AASFGASATAKISVDASLAG 177
ELGKP+ + + P G++P +E PP PGP ++FGASATAKISVDASLAG
Sbjct: 126 RELGKPMLLDNSMPHPMGSMP------FEAPPMPGPDIVPPSTFGASATAKISVDASLAG 179
Query: 178 AIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRI-- 235
IIGKGG N+K I R TGAKL+IRD+E++PNL+NIELEG+F+QIK ASAMV ELIVRI
Sbjct: 180 GIIGKGGTNTKHISRMTGAKLAIRDNESNPNLKNIELEGTFDQIKHASAMVTELIVRISG 239
Query: 236 GPAHAKNPATAGSAAHPLSSNFKTKLCGNFAKGSCTFGDRCHFAHGAAELRK 287
AKNP A P SNFKTKLC NF KGSCTFGDRCHFAHG +ELRK
Sbjct: 240 NAPPAKNPGRGSHAGGP-GSNFKTKLCENFNKGSCTFGDRCHFAHGESELRK 290
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 78 PSRNMAVPPPASNGPTVVKSRMCNRLNSAEGCKFGDKCHFAHGEWELGKPIA 129
P R P SN K+++C N C FGD+CHFAHGE EL KP A
Sbjct: 247 PGRGSHAGGPGSN----FKTKLCENFNKGS-CTFGDRCHFAHGESELRKPPA 293
>sp|Q7XPK1|C3H31_ORYSJ Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa
subsp. japonica GN=Os04g0665700 PE=2 SV=1
Length = 309
Score = 298 bits (763), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 175/310 (56%), Positives = 202/310 (65%), Gaps = 33/310 (10%)
Query: 4 RKRTKPET--GINANGVFKKSKHESESGVGSKSKPCTKFFSTAGCPFGESCHFLHYFPGG 61
RKR++P+T G A G + ++G+ SK KPCTKFFST GCPFGE CHF H+ PGG
Sbjct: 8 RKRSRPDTANGGAAGGKRSRETESFQTGLSSKLKPCTKFFSTIGCPFGEGCHFSHFVPGG 67
Query: 62 YNAVAQMMNLPQAVPAPSRNMAVPP-------PASNGPTVVKSRMCNRLNSAEGCKFGDK 114
Y AVA+ +NL + PAS+G K+RMC + N+AEGCKFGDK
Sbjct: 68 YQAVAKTLNLGNPAVPAPARAPMDHAAGGNSHPASSG----KTRMCTKYNTAEGCKFGDK 123
Query: 115 CHFAHGEWELGKPIAISHDDPRAFGAVPGRMGGRYEPPPAPGPAA-------SFGASATA 167
CHFAHGE ELGKP +SH+ A+ MGGRY P P P A +FGASATA
Sbjct: 124 CHFAHGERELGKPAYMSHES-----AMAPPMGGRYGGRPEPPPPAAMGPPAGNFGASATA 178
Query: 168 KISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAM 227
KISVDASLAG IIGKGGVN+KQICR TG KLSIRDHE+D NL+NIELEG+F+QIKQAS M
Sbjct: 179 KISVDASLAGGIIGKGGVNTKQICRVTGVKLSIRDHESDSNLKNIELEGNFDQIKQASNM 238
Query: 228 VRELIVRIGPA--------HAKNPATAGSAAHPLSSNFKTKLCGNFAKGSCTFGDRCHFA 279
V ELI I P+ A A AG SN+KTKLC NF KG+CTFGDRCHFA
Sbjct: 239 VGELIATISPSTPAKKPAGSAAGAAPAGRGGPGGRSNYKTKLCENFVKGTCTFGDRCHFA 298
Query: 280 HGAAELRKTA 289
HG E RK A
Sbjct: 299 HGENEQRKGA 308
Score = 35.0 bits (79), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 96 KSRMCNRLNSAEGCKFGDKCHFAHGEWELGKPIA 129
K+++C C FGD+CHFAHGE E K A
Sbjct: 277 KTKLCENFVKGT-CTFGDRCHFAHGENEQRKGAA 309
>sp|Q9C7C3|C3H36_ARATH Zinc finger CCCH domain-containing protein 36 OS=Arabidopsis
thaliana GN=At3g12130 PE=2 SV=1
Length = 248
Score = 269 bits (687), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 159/304 (52%), Positives = 184/304 (60%), Gaps = 71/304 (23%)
Query: 1 MDTRKRTKPETG-INANGV-FKKSKHESES---GVGSKSKPCTKFFSTAGCPFGESCHFL 55
MDTRKR +PE G N+NG +KKSK E ES G+GSKSKPCTKFFST+GCPFGE+CHFL
Sbjct: 1 MDTRKRGRPEAGSFNSNGGGYKKSKQEMESYSTGLGSKSKPCTKFFSTSGCPFGENCHFL 60
Query: 56 HYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGPTVVKSRMCNRLNSAEGCKFGDKC 115
HY PGGYNAV+QM N+ +P SRNM S G +F
Sbjct: 61 HYVPGGYNAVSQMTNMGPPIPQVSRNMQ--------------------GSGNGGRF---- 96
Query: 116 HFAHGEWELGKPIAISHDDPRAFGAVPGRMGGRYEPPPAPGPAASFGASATAKISVDASL 175
GR E P G ++FG SATA+ SVDASL
Sbjct: 97 ------------------------------SGRGESGP--GHVSNFGDSATARFSVDASL 124
Query: 176 AGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRI 235
AGAIIGKGGV+SKQICRQTG KLSI+DHE DPNL+NI LEG+ EQI +ASAMV++LI R+
Sbjct: 125 AGAIIGKGGVSSKQICRQTGVKLSIQDHERDPNLKNIVLEGTLEQISEASAMVKDLIGRL 184
Query: 236 GPAHAKNPATAGSAA---------HPLSSNFKTKLCGNFAKGSCTFGDRCHFAHGAAELR 286
A K P HP SNFKTK+C F+KG+CTFGDRCHFAHG AELR
Sbjct: 185 NSAAKKPPGGGLGGGGGMGSEGKPHP-GSNFKTKICERFSKGNCTFGDRCHFAHGEAELR 243
Query: 287 KTAI 290
K+ I
Sbjct: 244 KSGI 247
>sp|Q9FG30|C3H52_ARATH Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis
thaliana GN=At5g06770 PE=2 SV=1
Length = 240
Score = 266 bits (680), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/298 (52%), Positives = 183/298 (61%), Gaps = 67/298 (22%)
Query: 1 MDTRKRTKPETGI--NANGVFKKSKHESES---GVGSKSKPCTKFFSTAGCPFGESCHFL 55
MD RKR +PE N+NG FK+SK E ES G+GSKSKPCTKFFST+GCPFG++CHFL
Sbjct: 1 MDARKRGRPEAAASHNSNGGFKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFL 60
Query: 56 HYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGPTVVKSRMCNRLNSAEGCKFGDKC 115
HY PGGYNA AQM NL V SRNM S GP
Sbjct: 61 HYVPGGYNAAAQMTNLRPPVSQVSRNMQ----GSGGPG---------------------- 94
Query: 116 HFAHGEWELGKPIAISHDDPRAFGAVPGRMGGRYEPPPAPGPAASFGASATAKISVDASL 175
GR GR + P GP + FGAS T+KISVDASL
Sbjct: 95 ---------------------------GRFSGRGD--PGSGPVSIFGAS-TSKISVDASL 124
Query: 176 AGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRI 235
AGAIIGKGG++SKQICR+TGAKLSI+DHE DPNL+ IELEG+FEQI AS MVRELI R+
Sbjct: 125 AGAIIGKGGIHSKQICRETGAKLSIKDHERDPNLKIIELEGTFEQINVASGMVRELIGRL 184
Query: 236 GPAHAKNPATAGSAA---HPLSSNFKTKLCGNFAKGSCTFGDRCHFAHGAAELRKTAI 290
G K P G HP SN+KTK+C ++KG+CT+GDRCHFAHG +ELR++ I
Sbjct: 185 GS--VKKPQGIGGPEGKPHP-GSNYKTKICDRYSKGNCTYGDRCHFAHGESELRRSGI 239
>sp|Q9LT81|C3H39_ARATH Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis
thaliana GN=At3g19360 PE=2 SV=1
Length = 386
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 92/236 (38%), Gaps = 43/236 (18%)
Query: 77 APSRNMAVPPPASNGPTVV--KSRMCNRLNSAEGCKFGDKCHFAHGEWELGKPIAISHDD 134
PS N PPP + G + K+RMC + A C+ G+ C+FAHG +L +P
Sbjct: 88 VPSLN---PPPVNKGTANIFYKTRMCAKF-RAGTCRNGELCNFAHGIEDLRQP------- 136
Query: 135 PRAFGAVPGRMGGRYEPPPAPGPAASFGASATAKISVDASLAGAIIGKGGVNSKQICRQT 194
P + + G PPPA + SLA + + K I R
Sbjct: 137 PSNWQEIVG-------PPPAGQDRERERERERERER--PSLAPVVNNNWEDDQKIILRMK 187
Query: 195 GAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVREL-IVRIGPAHAKNPATA------- 246
+ E R + + ++ S +RE ++ +G A P+
Sbjct: 188 LCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTASNLIEV 247
Query: 247 ---GSAAHPLSSN---------FKTKLCGNF-AKGSCTFGDRCHFAHGAAELRKTA 289
GS P N +KT+LC F G C FGD+CHFAHG AEL +
Sbjct: 248 NRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSV 303
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 23/123 (18%)
Query: 25 ESESGVGSKSKPCTKFFSTAGCPFGESCHFLH-----------------YFPGGYNAVAQ 67
E + + + K C KF CP+G+ C+F+H G A Q
Sbjct: 177 EDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQ 236
Query: 68 MMNLPQAVPAPSR--NMAVPPPASNGPTV----VKSRMCNRLNSAEGCKFGDKCHFAHGE 121
+ + +R ++ VP P +NG V K+R+C + + C FGDKCHFAHG+
Sbjct: 237 PSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQ 296
Query: 122 WEL 124
EL
Sbjct: 297 AEL 299
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 30 VGSKSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQM 68
V K++ C KF T CPFG+ CHF H +N+V ++
Sbjct: 268 VYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSVGRV 306
>sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa
subsp. japonica GN=Os08g0159800 PE=2 SV=1
Length = 367
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLHYFPGGYN---AVAQMMNLPQAVPAPSRNMAVPPPAS 89
K + C KF++ GCP+G++C FLH A++ ++ S N A AS
Sbjct: 171 KGRHCKKFYTDEGCPYGDACTFLHDEQSKARESVAISLSPSVGGGGGGGSYNSAAAAAAS 230
Query: 90 ------NGP----TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWELGK 126
NGP + K+R+CN+ C FG KCHFAHG EL K
Sbjct: 231 ASAAAGNGPMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHK 277
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 255 SNFKTKLCGNFA-KGSCTFGDRCHFAHGAAELRK 287
SN+KT++C + G C FG +CHFAHGAAEL K
Sbjct: 244 SNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHK 277
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 257 FKTKLCGNFAKGSCTFGDRCHFAHGAAELRK 287
FKTKLC F G+C + C+FAHG ELRK
Sbjct: 88 FKTKLCCKFRAGTCPYVTNCNFAHGMEELRK 118
Score = 38.5 bits (88), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 41/113 (36%), Gaps = 29/113 (25%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLHYF-------PGGYNAVAQMMNLPQAVPAPSRNMAVP 85
K+K C KF CP+ +C+F H P VA +A +P
Sbjct: 89 KTKLCCKF-RAGTCPYVTNCNFAHGMEELRKPPPNWQEIVAAHEEATEA----REEHQIP 143
Query: 86 PPASNGPT-----------------VVKSRMCNRLNSAEGCKFGDKCHFAHGE 121
S+GPT K R C + + EGC +GD C F H E
Sbjct: 144 IMTSSGPTAGGDAGCGGGGGGGSGRAYKGRHCKKFYTDEGCPYGDACTFLHDE 196
>sp|Q5PP65|C3H28_ARATH Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis
thaliana GN=At2g35430 PE=2 SV=1
Length = 252
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 33 KSKPCTKFFSTAGCPF-GESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRN-----MAVPP 86
K+K C KF CP+ SCHF H N + V SRN +++ P
Sbjct: 73 KTKLCFKF-RAGTCPYSASSCHFAHSAEELRLPPPPPPNWQETVTEASRNRESFAVSLGP 131
Query: 87 PASNGPTV----VKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 124
+ T+ K+R+CN+ + C FG CHFAHG EL
Sbjct: 132 RGNVAQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 219 EQIKQASAMVRELIVRIGPAHAKNPATAGSAAHPLSS-NFKTKLCGNF-AKGSCTFGDRC 276
E + +AS V +GP G+ A L S N+KT++C + G C FG C
Sbjct: 113 ETVTEASRNRESFAVSLGPR--------GNVAQTLKSPNWKTRICNKWQTTGYCPFGSHC 164
Query: 277 HFAHGAAEL 285
HFAHG +EL
Sbjct: 165 HFAHGPSEL 173
Score = 39.3 bits (90), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 255 SNFKTKLCGNFAKGSCTF-GDRCHFAHGAAELR 286
S FKTKLC F G+C + CHFAH A ELR
Sbjct: 70 SFFKTKLCFKFRAGTCPYSASSCHFAHSAEELR 102
>sp|Q9LQM3|C3H12_ARATH Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis
thaliana GN=At1g32360 PE=2 SV=1
Length = 384
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 255 SNFKTKLCGNFA-KGSCTFGDRCHFAHGAAELRK 287
SN+KT++C + G C FG +CHFAHGAAEL +
Sbjct: 259 SNWKTRICNKWEITGYCPFGAKCHFAHGAAELHR 292
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 26 SESGVGSKSKPCTKFFSTAGCPFGESCHFLH 56
+ESG K + C KF++ GCP+GESC FLH
Sbjct: 167 AESGRSFKGRHCKKFYTEEGCPYGESCTFLH 197
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 257 FKTKLCGNFAKGSCTFGDRCHFAHGAAELRK 287
FKTKLC F G+C + C+FAH ELR+
Sbjct: 92 FKTKLCCKFRAGTCPYITNCNFAHTVEELRR 122
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 92 PTVVKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 124
P+ K+R+CN+ C FG KCHFAHG EL
Sbjct: 258 PSNWKTRICNKWEITGYCPFGAKCHFAHGAAEL 290
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 20/108 (18%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLHYF-------PGGYNAVAQM-------MNLP--QAVP 76
K+K C KF CP+ +C+F H P VA M P V
Sbjct: 93 KTKLCCKF-RAGTCPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERSGGMGTPTVSVVE 151
Query: 77 APSRNMAVPPPASNGPTV---VKSRMCNRLNSAEGCKFGDKCHFAHGE 121
P +P S+ K R C + + EGC +G+ C F H E
Sbjct: 152 IPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLHDE 199
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 33 KSKPCTKFFSTAGCPFGESCHF------LHYFPGG 61
K++ C K+ T CPFG CHF LH F GG
Sbjct: 262 KTRICNKWEITGYCPFGAKCHFAHGAAELHRFGGG 296
>sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3 OS=Homo sapiens GN=FUBP3
PE=1 SV=2
Length = 572
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 162 GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDH---EADPNLRNIELEGSF 218
G +V A G +IGKGG N K I +Q+GA + ++ + +DPNLR + G
Sbjct: 352 GGVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVP 411
Query: 219 EQIKQASAMVRELI 232
+QI+ A ++ E +
Sbjct: 412 QQIEVARQLIDEKV 425
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKL-SIRD----HEADPNLRNIELEGSF 218
S +I + AS G +IG+GG KQ+ +TG K+ I+D AD LR + G
Sbjct: 162 STIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADKPLR---ITGDA 218
Query: 219 EQIKQASAMVRELI 232
+++QA MV E+I
Sbjct: 219 FKVQQAREMVLEII 232
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 166 TAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQAS 225
T + V + G IIG+GG +I ++G K+ I + R L G+ E I+QA
Sbjct: 79 TEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAK 138
Query: 226 AMVRELIVR 234
++ +++ R
Sbjct: 139 RLLGQIVDR 147
>sp|Q8GVZ8|C3H48_ORYSJ Putative zinc finger CCCH domain-containing protein 48 OS=Oryza
sativa subsp. japonica GN=Os07g0139000 PE=4 SV=1
Length = 496
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 15/101 (14%)
Query: 33 KSKPCTKFFSTA-GCPFGESCHFLHYFPGGYN------AVAQMMNLPQAVPAPSRNMAVP 85
K+K C +++S GCP G +C + H G + AV+ + + + + + A
Sbjct: 379 KTKLCAEYYSRGLGCPRGNTCKYAH----GEDDLRLVVAVSSLADAGEGSSSSDSSFA-- 432
Query: 86 PPASNGPTVVKSRMCNRLNSAEGCKFGDKCHFAHGEWELGK 126
A G K+++C S C F C FAHGE ELGK
Sbjct: 433 --ALGGEDKYKTKLCKTFTSGGLCLFAANCRFAHGEVELGK 471
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 255 SNFKTKLCGNFAKGS-CTFGDRCHFAHGAAELRK 287
+KTKLC F G C F C FAHG EL K
Sbjct: 438 DKYKTKLCKTFTSGGLCLFAANCRFAHGEVELGK 471
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLHYF 58
K +PC FFS CP G++C F H +
Sbjct: 471 KKEPCWYFFSGQTCPRGDTCGFRHSY 496
>sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1
PE=1 SV=3
Length = 644
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 177 GAIIGKGGVNSKQICRQTGAKLSIRDH---EADPNLRNIELEGSFEQIKQASAMVRELI 232
G IIGKGG K I +Q+GA++ ++ + ADPN++ + G+ +QI A ++ E I
Sbjct: 389 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 447
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 153 PAPGPAASFG-ASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSI-----RDHEAD 206
PAPG G +A +I + AS AG +IGKGG KQ+ + G K+ + ++ AD
Sbjct: 173 PAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGAD 232
Query: 207 PNLRNIELEGSFEQIKQASAMVRELI 232
LR + G +++QA MV ELI
Sbjct: 233 KPLR---ITGDPYKVQQAKEMVLELI 255
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 166 TAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQAS 225
T + V + G IIG+GG +I +++G K+ I R+ L G+ E ++ A
Sbjct: 102 TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAK 161
Query: 226 AMVRELIVRIGPA----HAKNPATA 246
++ +++ + PA H P A
Sbjct: 162 RLLDQIVEKGRPAPGFHHGDGPGNA 186
>sp|Q32PX7|FUBP1_RAT Far upstream element-binding protein 1 OS=Rattus norvegicus
GN=Fubp1 PE=1 SV=1
Length = 639
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 177 GAIIGKGGVNSKQICRQTGAKLSIRDH---EADPNLRNIELEGSFEQIKQASAMVRELI 232
G IIGKGG K I +Q+GA++ ++ + ADPN++ + G+ +QI A ++ E I
Sbjct: 384 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 442
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 153 PAPGPAASFG-ASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSI-----RDHEAD 206
PAPG G +A +I + AS AG +IGKGG KQ+ + G K+ + ++ AD
Sbjct: 168 PAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGAD 227
Query: 207 PNLRNIELEGSFEQIKQASAMVRELI 232
LR + G +++QA MV ELI
Sbjct: 228 KPLR---ITGDPYKVQQAKEMVLELI 250
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 166 TAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQAS 225
T + V + G IIG+GG +I +++G K+ I R+ L G+ E ++ A
Sbjct: 97 TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAK 156
Query: 226 AMVRELIVRIGPA----HAKNPATA 246
++ +++ + PA H P A
Sbjct: 157 RLLDQIVEKGRPAPGFHHGDGPGNA 181
>sp|O19049|HNRPK_RABIT Heterogeneous nuclear ribonucleoprotein K OS=Oryctolagus cuniculus
GN=HNRNPK PE=2 SV=1
Length = 463
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 162 GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQI 221
G T ++++ LAG+IIGKGG KQI ++GA + I + R I + G+ +QI
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444
Query: 222 KQASAMVR 229
+ A +++
Sbjct: 445 QNAQYLLQ 452
>sp|P61980|HNRPK_RAT Heterogeneous nuclear ribonucleoprotein K OS=Rattus norvegicus
GN=Hnrnpk PE=1 SV=1
Length = 463
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 162 GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQI 221
G T ++++ LAG+IIGKGG KQI ++GA + I + R I + G+ +QI
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444
Query: 222 KQASAMVR 229
+ A +++
Sbjct: 445 QNAQYLLQ 452
>sp|P61979|HNRPK_MOUSE Heterogeneous nuclear ribonucleoprotein K OS=Mus musculus GN=Hnrnpk
PE=1 SV=1
Length = 463
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 162 GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQI 221
G T ++++ LAG+IIGKGG KQI ++GA + I + R I + G+ +QI
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444
Query: 222 KQASAMVR 229
+ A +++
Sbjct: 445 QNAQYLLQ 452
>sp|P61978|HNRPK_HUMAN Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK
PE=1 SV=1
Length = 463
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 162 GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQI 221
G T ++++ LAG+IIGKGG KQI ++GA + I + R I + G+ +QI
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444
Query: 222 KQASAMVR 229
+ A +++
Sbjct: 445 QNAQYLLQ 452
>sp|Q3T0D0|HNRPK_BOVIN Heterogeneous nuclear ribonucleoprotein K OS=Bos taurus GN=HNRNPK
PE=2 SV=1
Length = 464
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 162 GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQI 221
G T ++++ LAG+IIGKGG KQI ++GA + I + R I + G+ +QI
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444
Query: 222 KQASAMVR 229
+ A +++
Sbjct: 445 QNAQYLLQ 452
>sp|Q5R5H8|HNRPK_PONAB Heterogeneous nuclear ribonucleoprotein K OS=Pongo abelii GN=HNRNPK
PE=2 SV=1
Length = 464
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 162 GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQI 221
G T ++++ LAG+IIGKGG KQI ++GA + I + R I + G+ +QI
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444
Query: 222 KQASAMVR 229
+ A +++
Sbjct: 445 QNAQYLLQ 452
>sp|Q4R4M6|HNRPK_MACFA Heterogeneous nuclear ribonucleoprotein K OS=Macaca fascicularis
GN=HNRNPK PE=2 SV=1
Length = 464
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 162 GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQI 221
G T ++++ LAG+IIGKGG KQI ++GA + I + R I + G+ +QI
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 444
Query: 222 KQASAMVR 229
+ A +++
Sbjct: 445 QNAQYLLQ 452
>sp|A2ZVY5|C3H9_ORYSJ Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp.
japonica GN=Os01g0645000 PE=2 SV=1
Length = 333
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 236 GPAHAKNPATAGSAAHPLSSN-FKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 286
G PA +G+ + FKT+LC + + G C +GD+C FAHG ELR
Sbjct: 237 GDEQKAQPADSGAELEVYNQGMFKTELCNKWEETGDCPYGDQCQFAHGVTELR 289
Score = 38.1 bits (87), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 94 VVKSRMCNRLNSAEGCKFGDKCHFAHGEWELGKPIAISHDDPRAFGAV 141
+ K+ +CN+ C +GD+C FAHG EL +P+ I H PR AV
Sbjct: 258 MFKTELCNKWEETGDCPYGDQCQFAHGVTEL-RPV-IRH--PRYKTAV 301
Score = 38.1 bits (87), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 25/88 (28%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGP 92
K++ C K+ T CP+G+ C F H G + ++ P+
Sbjct: 260 KTELCNKWEETGDCPYGDQCQFAH----GVTELRPVIRHPR------------------- 296
Query: 93 TVVKSRMCNRLNSAEGCKFGDKCHFAHG 120
K+ +C + + + C +G +CHF H
Sbjct: 297 --YKTAVCRMVLAGDVCPYGHRCHFRHS 322
>sp|Q5ZIQ3|HNRPK_CHICK Heterogeneous nuclear ribonucleoprotein K OS=Gallus gallus
GN=HNRNPK PE=2 SV=1
Length = 427
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 162 GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQI 221
G T ++++ LAG+IIGKGG KQI ++GA + I + R I + G+ +QI
Sbjct: 349 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQI 408
Query: 222 KQASAMVR 229
+ A +++
Sbjct: 409 QNAQYLLQ 416
>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa
subsp. japonica GN=Os05g0576300 PE=2 SV=1
Length = 343
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 257 FKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 286
FKT+LC + + G+C +GD+C FAHG AELR
Sbjct: 269 FKTELCNKWEETGACPYGDQCQFAHGVAELR 299
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 94 VVKSRMCNRLNSAEGCKFGDKCHFAHGEWELGKPI 128
+ K+ +CN+ C +GD+C FAHG EL +P+
Sbjct: 268 MFKTELCNKWEETGACPYGDQCQFAHGVAEL-RPV 301
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 25/87 (28%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGP 92
K++ C K+ T CP+G+ C F H VA++ P P
Sbjct: 270 KTELCNKWEETGACPYGDQCQFAH-------GVAELR-----------------PVIRHP 305
Query: 93 TVVKSRMCNRLNSAEGCKFGDKCHFAH 119
K+++C + + C +G +CHF H
Sbjct: 306 RY-KTQVCRMVLAGGVCPYGHRCHFRH 331
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
PE=1 SV=1
Length = 338
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 254 SSNFKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 286
SS +KT+LC F + G+C +GD+C FAHG ELR
Sbjct: 112 SSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 257 FKTKLCGNF-AKGSCTFGDRCHFAHGAAELRKTA 289
+KT+LC F G C +G RCHF H A E R A
Sbjct: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRALA 186
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 95 VKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 124
K+ +C CK+GDKC FAHG EL
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHEL 144
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 28/107 (26%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGP 92
K++ C F C +G+ C F H G + + + P+
Sbjct: 116 KTELCRPFEENGACKYGDKCQFAH----GIHELRSLTRHPK------------------- 152
Query: 93 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWE---LGKPIAISHDDPR 136
K+ +C ++ C +G +CHF H E L +S D PR
Sbjct: 153 --YKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGARDLSADRPR 197
>sp|Q91WJ8|FUBP1_MOUSE Far upstream element-binding protein 1 OS=Mus musculus GN=Fubp1
PE=1 SV=1
Length = 651
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 177 GAIIGKGGVNSKQICRQTGAKLSIRDH---EADPNLRNIELEGSFEQIKQASAMVRELI 232
G IIGKGG K I +Q+GA++ ++ ADPN++ + G+ +QI A ++ E I
Sbjct: 385 GLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 443
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 153 PAPGPAASFG-ASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSI-----RDHEAD 206
PAPG G +A +I + AS AG +IGKGG KQ+ + G K+ + ++ AD
Sbjct: 169 PAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGAD 228
Query: 207 PNLRNIELEGSFEQIKQASAMVRELI 232
LR + G +++QA MV ELI
Sbjct: 229 KPLR---ITGDPYKVQQAKEMVLELI 251
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 166 TAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQAS 225
T + V + G IIG+GG +I +++G K+ I R+ L G+ E ++ A
Sbjct: 98 TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAK 157
Query: 226 AMVRELIVRIGPA----HAKNPATA 246
++ +++ + PA H P A
Sbjct: 158 RLLDQIVEKGRPAPGFHHGDGPGNA 182
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 254 SSNFKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 286
SS +KT+LC F + G+C +GD+C FAHG ELR
Sbjct: 112 SSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 257 FKTKLCGNF-AKGSCTFGDRCHFAHGAAELRKTA 289
+KT+LC F G C +G RCHF H A E R A
Sbjct: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRALA 186
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 95 VKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 124
K+ +C CK+GDKC FAHG EL
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHEL 144
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 28/107 (26%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGP 92
K++ C F C +G+ C F H G + + + P+
Sbjct: 116 KTELCRPFEENGACKYGDKCQFAH----GIHELRSLTRHPK------------------- 152
Query: 93 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWE---LGKPIAISHDDPR 136
K+ +C ++ C +G +CHF H E L +S D PR
Sbjct: 153 --YKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGGRDLSADRPR 197
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
PE=1 SV=1
Length = 338
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 254 SSNFKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 286
SS +KT+LC F + G+C +GD+C FAHG ELR
Sbjct: 112 SSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 257 FKTKLCGNF-AKGSCTFGDRCHFAHGAAELRKTA 289
+KT+LC F G C +G RCHF H A E R A
Sbjct: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRALA 186
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 95 VKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 124
K+ +C CK+GDKC FAHG EL
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHEL 144
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 28/107 (26%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGP 92
K++ C F C +G+ C F H G + + + P+
Sbjct: 116 KTELCRPFEENGACKYGDKCQFAH----GIHELRSLTRHPK------------------- 152
Query: 93 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWE---LGKPIAISHDDPR 136
K+ +C ++ C +G +CHF H E L +S D PR
Sbjct: 153 --YKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGGRDLSADRPR 197
>sp|Q10MN8|C3H21_ORYSJ Putative zinc finger CCCH domain-containing protein 21 OS=Oryza
sativa subsp. japonica GN=Os03g0301500 PE=4 SV=1
Length = 457
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 258 KTKLCGNFAKGSCTFGDRCHFAHGAAELR 286
KT+LC + +G+C +G RC FAHG ELR
Sbjct: 384 KTELCNKWERGACPYGARCRFAHGLQELR 412
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLH 56
K+ PC F + +GCP+G CHF H
Sbjct: 421 KTLPCQMFAAASGCPYGHRCHFRH 444
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 26/88 (29%)
Query: 32 SKSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNG 91
+K++ C K+ CP+G C F H G + ++ P+
Sbjct: 383 AKTELCNKW-ERGACPYGARCRFAH----GLQELRPVIRHPR------------------ 419
Query: 92 PTVVKSRMCNRLNSAEGCKFGDKCHFAH 119
K+ C +A GC +G +CHF H
Sbjct: 420 ---YKTLPCQMFAAASGCPYGHRCHFRH 444
>sp|Q09436|MEX6_CAEEL Zinc finger protein mex-6 OS=Caenorhabditis elegans GN=mex-6 PE=3
SV=3
Length = 467
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 253 LSSNFKTKLCGNFAKG--SCTFGDRCHFAHGAAELRKTAI 290
L NFKT+LC A G C G RC FAHG ELR + I
Sbjct: 270 LPHNFKTRLCMTHAAGINPCALGARCKFAHGLKELRASDI 309
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 254 SSNFKTKLCGNFAKGS---CTFGDRCHFAH 280
++ +KTKLC NFA+G C +G RC F H
Sbjct: 315 NNKYKTKLCKNFARGGSGVCPYGLRCEFVH 344
>sp|P47977|CTH2_YEAST mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TIS11 PE=1 SV=1
Length = 285
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 257 FKTKLCGNFA-KGSCTFGDRCHFAHGAAELR 286
+KT+LC +F KGSC +G +C FAHG EL+
Sbjct: 170 YKTELCESFTLKGSCPYGSKCQFAHGLGELK 200
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 256 NFKTKLCGNFAK-GSCTFGDRCHFAHG 281
NF+TK C N+ K G C +G RC F HG
Sbjct: 207 NFRTKPCVNWEKLGYCPYGRRCCFKHG 233
>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
Length = 436
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 254 SSNFKTKLCGNFAK-GSCTFGDRCHFAHGAAELRKT 288
+S +KT+LC F + G C +G++C FAHG+ ELR
Sbjct: 133 TSRYKTELCRPFEEAGECKYGEKCQFAHGSHELRNV 168
Score = 38.5 bits (88), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 84 VPPPASNGPTVVKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 124
+PP + K+ +C A CK+G+KC FAHG EL
Sbjct: 125 LPPQQPMNTSRYKTELCRPFEEAGECKYGEKCQFAHGSHEL 165
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 257 FKTKLCGNF-AKGSCTFGDRCHFAHGAAE 284
+KT+ C F + G C +G RCHF H A E
Sbjct: 174 YKTEYCRTFHSVGFCPYGPRCHFVHNADE 202
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLH 56
K++ C F S CP+G CHF+H
Sbjct: 175 KTEYCRTFHSVGFCPYGPRCHFVH 198
>sp|Q3U0V1|FUBP2_MOUSE Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp
PE=1 SV=2
Length = 748
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 177 GAIIGKGGVNSKQICRQTGAKLSIRDH---EADPNLRNIELEGSFEQIKQASAMVRELI 232
G +IG+GG N K I +QTGA + I DPN + + GS +QI A ++ E I
Sbjct: 438 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAKQLIEEKI 496
Score = 38.9 bits (89), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 163 ASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIK 222
S T + V + G IIG+GG +I + +G K+ I R++ L G+ E ++
Sbjct: 144 TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQ 203
Query: 223 QASAMVRELIVR 234
+A M+ +++ R
Sbjct: 204 KAKMMLDDIVSR 215
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 147 GRYEPPPAPGPAASFGASATAK-ISVDASLAGAIIGKGGVNSKQICRQTGAKLS-IRDHE 204
GR PP A+ G + T + I + A AG +IGKGG KQ+ + G K+ I+D
Sbjct: 216 GRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS 275
Query: 205 ADPNL-RNIELEGSFEQIKQASAMVRELI 232
+ N+ + + + G +++QA MV +++
Sbjct: 276 QNTNVDKPLRIIGDPYKVQQACEMVMDIL 304
>sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CTH1 PE=1 SV=2
Length = 325
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 257 FKTKLCGNFA-KGSCTFGDRCHFAHGAAELR 286
+KT+LC +F KG C +G++C FAHG EL+
Sbjct: 205 YKTELCESFTIKGYCKYGNKCQFAHGLNELK 235
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 66 AQMMNLPQAVP-------APSRNMAVPPPASNGPTVVKSRMCNRLNSAEGCKFGDKCHFA 118
+Q LP +P P R + P T+ K+ +C CK+G+KC FA
Sbjct: 169 SQSTGLPYTLPIQKTTKLEPCRRAPLQLPQLVNKTLYKTELCESFTIKGYCKYGNKCQFA 228
Query: 119 HGEWEL 124
HG EL
Sbjct: 229 HGLNEL 234
Score = 35.0 bits (79), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 254 SSNFKTKLCGNFAK-GSCTFGDRCHFAHG 281
S+N++TK C N++K G C +G RC F HG
Sbjct: 240 SNNYRTKPCINWSKLGYCPYGKRCCFKHG 268
>sp|Q99PF5|FUBP2_RAT Far upstream element-binding protein 2 OS=Rattus norvegicus
GN=Khsrp PE=1 SV=1
Length = 721
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 177 GAIIGKGGVNSKQICRQTGAKLSIRDH---EADPNLRNIELEGSFEQIKQASAMVRELI 232
G +IG+GG N K I +QTGA + I DPN + + GS +QI A ++ E I
Sbjct: 438 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAKQLIEEKI 496
Score = 38.1 bits (87), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 163 ASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIK 222
S T + V + G IIG+GG +I + +G K+ I R++ L G+ E ++
Sbjct: 144 TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQ 203
Query: 223 QASAMVRELIVR 234
+A M+ +++ R
Sbjct: 204 KAKMMLDDIVSR 215
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 147 GRYEPPPAPGPAASFGASATAK-ISVDASLAGAIIGKGGVNSKQICRQTGAKL-SIRDHE 204
GR PP A+ G + T + I + A AG +IGKGG KQ+ + G K+ I+D
Sbjct: 216 GRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS 275
Query: 205 ADPNL-RNIELEGSFEQIKQASAMVRELI 232
+ N+ + + + G +++QA MV +++
Sbjct: 276 QNTNVDKPLRIIGDPYKVQQACEMVMDIL 304
>sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein 2 OS=Homo sapiens GN=KHSRP
PE=1 SV=4
Length = 711
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 177 GAIIGKGGVNSKQICRQTGAKLSIRDH---EADPNLRNIELEGSFEQIKQASAMVRELI 232
G +IG+GG N K I +QTGA + I DPN + + GS +QI A ++ E I
Sbjct: 437 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKI 495
Score = 37.7 bits (86), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 163 ASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIK 222
S T + V + G IIG+GG +I + +G K+ I R++ L G+ E ++
Sbjct: 143 TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQ 202
Query: 223 QASAMVRELIVR 234
+A M+ +++ R
Sbjct: 203 KAKMMLDDIVSR 214
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 147 GRYEPPPAPGPAASFGASATAK-ISVDASLAGAIIGKGGVNSKQICRQTGAKLS-IRDHE 204
GR PP A+ G + T + I + A AG +IGKGG KQ+ + G K+ I+D
Sbjct: 215 GRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS 274
Query: 205 ADPNL-RNIELEGSFEQIKQASAMVRELI 232
+ N+ + + + G +++QA MV +++
Sbjct: 275 QNTNVDKPLRIIGDPYKVQQACEMVMDIL 303
>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis
thaliana GN=At1g68200 PE=2 SV=1
Length = 308
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 25/98 (25%)
Query: 32 SKSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNG 91
+K++ C K+ T CP+G+ C F H G + ++ P+
Sbjct: 223 TKTELCNKWQETGTCPYGDHCQFAH----GIKELRPVIRHPR------------------ 260
Query: 92 PTVVKSRMCNRLNSAEGCKFGDKCHFAHGEWELGKPIA 129
K+ +C + + + C +G +CHF H E K +A
Sbjct: 261 ---YKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKLVA 295
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 258 KTKLCGNFAK-GSCTFGDRCHFAHGAAELR 286
KT+LC + + G+C +GD C FAHG ELR
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELR 253
Score = 35.0 bits (79), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 94 VVKSRMCNRLNSAEGCKFGDKCHFAHGEWELGKPIAISH 132
+ K+ +CN+ C +GD C FAHG EL +P+ I H
Sbjct: 222 MTKTELCNKWQETGTCPYGDHCQFAHGIKEL-RPV-IRH 258
Score = 31.2 bits (69), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 257 FKTKLCGNFAKG-SCTFGDRCHFAHGAAELRK 287
+KT++C G +C +G RCHF H +E K
Sbjct: 261 YKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEK 292
>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis
GN=zfp36l2 PE=2 SV=1
Length = 333
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 254 SSNFKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 286
S+ +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 99 STRYKTELCRPFEESGACKYGEKCQFAHGFHELR 132
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 93 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 124
T K+ +C + CK+G+KC FAHG EL
Sbjct: 100 TRYKTELCRPFEESGACKYGEKCQFAHGFHEL 131
Score = 35.0 bits (79), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 257 FKTKLCGNF-AKGSCTFGDRCHFAHGAAELRK 287
+KT+LC F G C +G RCH H A E R+
Sbjct: 140 YKTELCRTFHTIGFCPYGPRCHLIHNAEERRQ 171
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 25/91 (27%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGP 92
K++ C F + C +GE C F H G++ + + P+
Sbjct: 103 KTELCRPFEESGACKYGEKCQFAH----GFHELRSLTRHPK------------------- 139
Query: 93 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWE 123
K+ +C ++ C +G +CH H E
Sbjct: 140 --YKTELCRTFHTIGFCPYGPRCHLIHNAEE 168
>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1
Length = 326
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 256 NFKTKLCGNFAK-GSCTFGDRCHFAHGAAELRK 287
+KT+LC F++ G C +G +C FAHG ELR+
Sbjct: 103 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQ 135
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 256 NFKTKLCGNF-AKGSCTFGDRCHFAHGAAE 284
+KT+LC F +G C +G RCHF H +E
Sbjct: 141 KYKTELCHKFYLQGRCPYGSRCHFIHNPSE 170
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 96 KSRMCNRLNSAEGCKFGDKCHFAHGEWEL 124
K+ +C + + C++G KC FAHG EL
Sbjct: 105 KTELCRTFSESGRCRYGAKCQFAHGLGEL 133
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLH 56
K++ C KF+ CP+G CHF+H
Sbjct: 143 KTELCHKFYLQGRCPYGSRCHFIH 166
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 34/128 (26%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGP 92
K++ C F + C +G C F H G + Q P+
Sbjct: 105 KTELCRTFSESGRCRYGAKCQFAH----GLGELRQANRHPK------------------- 141
Query: 93 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWE----LGKPIAISHDDPRAFGAVPGRMGGR 148
K+ +C++ C +G +CHF H E G P + +F +P GR
Sbjct: 142 --YKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSI--SFSGLP---SGR 194
Query: 149 YEPPPAPG 156
PP PG
Sbjct: 195 RTSPPPPG 202
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 254 SSNFKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 286
S+ +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 129 STRYKTELCRPFEESGACKYGEKCQFAHGFHELR 162
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 257 FKTKLCGNF-AKGSCTFGDRCHFAHGAAELRK 287
+KT+LC F G C +G RCHF H A E R+
Sbjct: 170 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRQ 201
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 93 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 124
T K+ +C + CK+G+KC FAHG EL
Sbjct: 130 TRYKTELCRPFEESGACKYGEKCQFAHGFHEL 161
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 25/91 (27%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGP 92
K++ C F + C +GE C F H G++ + + P+
Sbjct: 133 KTELCRPFEESGACKYGEKCQFAH----GFHELRSLTRHPK------------------- 169
Query: 93 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWE 123
K+ +C ++ C +G +CHF H E
Sbjct: 170 --YKTELCRTFHTIGFCPYGPRCHFIHNAEE 198
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
GN=zfp36l2-B PE=2 SV=1
Length = 364
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 254 SSNFKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 286
S+ +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 131 STRYKTELCRPFEENGACKYGEKCQFAHGFHELR 164
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 257 FKTKLCGNF-AKGSCTFGDRCHFAHGAAELRK 287
+KT+LC F G C +G RCHF H A E R+
Sbjct: 172 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRQ 203
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 25/91 (27%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGP 92
K++ C F C +GE C F H G++ + + P+
Sbjct: 135 KTELCRPFEENGACKYGEKCQFAH----GFHELRSLTRHPK------------------- 171
Query: 93 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWE 123
K+ +C ++ C +G +CHF H E
Sbjct: 172 --YKTELCRTFHTIGFCPYGPRCHFIHNAEE 200
Score = 35.0 bits (79), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 93 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 124
T K+ +C CK+G+KC FAHG EL
Sbjct: 132 TRYKTELCRPFEENGACKYGEKCQFAHGFHEL 163
>sp|Q8UVD9|FUBP2_CHICK Far upstream element-binding protein 2 OS=Gallus gallus GN=KHSRP
PE=1 SV=1
Length = 769
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 140 AVPGRMGGRYEPPPAPGPAASFGASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLS 199
A+P ++G + PP + + T + V + G IIG+GG +I + +G K+
Sbjct: 192 ALPPQLGPMHPPPRS--------TTVTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQ 243
Query: 200 IRDHEADPNLRNIELEGSFEQIKQASAMVRELIVR 234
I R++ L GS E +++A M+ +++ R
Sbjct: 244 ISPDSGGLPERSVSLTGSPEAVQKAKLMLDDIVSR 278
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 177 GAIIGKGGVNSKQICRQTGAKLSIRDH---EADPNLRNIELEGSFEQIKQASAMVRELI 232
G +IG+GG N K I +Q GA + I DPN + + GS +QI+ A + E I
Sbjct: 499 GLVIGRGGENVKAINQQRGAFVEISRQLPPNGDPNFKLFIIRGSPQQIEHAKQPIEEKI 557
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 168 KISVDASLAGAIIGKGGVNSKQICRQTGAKLS-IRDHEADPNL-RNIELEGSFEQIKQAS 225
+I + A AG +IGKGG KQ+ + G K+ I+D + N+ + + + G +++QA
Sbjct: 300 EIMIPAGKAGLVIGKGGETIKQLQERAGVKMIFIQDGSQNTNVDKPLRIIGDPYKVQQAC 359
Query: 226 AMVRELI 232
MV +++
Sbjct: 360 EMVMDIL 366
>sp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis
thaliana GN=At3g48440 PE=1 SV=1
Length = 448
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 50/131 (38%), Gaps = 28/131 (21%)
Query: 37 CTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGPTVVK 96
C +F T GC +GE+C F H P A A +N +P + P NG
Sbjct: 164 CKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNF-LGLPLRPGEVECPYYMRNG----- 217
Query: 97 SRMCNRLNSAEGCKFGDKCHFAHGEWELGKPIAISHDDPRAFGAVPGRMGGRYEPPPAPG 156
CK+G +C F H + P I D +F G G +
Sbjct: 218 -----------SCKYGAECKFNHPD-----PTTIGGTDSPSFRGNNGVSIGTF------S 255
Query: 157 PAASFGASATA 167
P A+F AS+T+
Sbjct: 256 PKATFQASSTS 266
>sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 OS=Caenorhabditis elegans GN=mex-5 PE=1
SV=1
Length = 468
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 256 NFKTKLCGNFAKG--SCTFGDRCHFAHGAAELRKT 288
N+KT+LC A G C G RC FAHG ELR T
Sbjct: 270 NYKTRLCMMHASGIKPCDMGARCKFAHGLKELRAT 304
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 244 ATAGSAAHPLSSNFKTKLCGNFAKGS---CTFGDRCHFAH 280
AT A +P ++ +KTKLC NFA+G C +G RC F H
Sbjct: 303 ATDAPARYP-NNKYKTKLCKNFARGGTGFCPYGLRCEFVH 341
>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
Length = 325
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 256 NFKTKLCGNFAK-GSCTFGDRCHFAHGAAELRK 287
+KT+LC F++ G C +G +C FAHG ELR+
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQ 133
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 256 NFKTKLCGNF-AKGSCTFGDRCHFAHGAAE 284
+KT+LC F +G C +G RCHF H +E
Sbjct: 139 KYKTELCHKFYLQGRCPYGSRCHFIHNPSE 168
Score = 34.7 bits (78), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 96 KSRMCNRLNSAEGCKFGDKCHFAHGEWELGKP 127
K+ +C + + C++G KC FAHG EL +P
Sbjct: 103 KTELCRTFSESGRCRYGAKCQFAHGLGELRQP 134
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVP---APSRNMAVPPPAS 89
K++ C KF+ CP+G CHF+H A L Q++ PS PPPAS
Sbjct: 141 KTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPHVLRQSISFSGLPSGRRTSPPPAS 200
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 33/126 (26%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGP 92
K++ C F + C +G C F H G + Q PSR+
Sbjct: 103 KTELCRTFSESGRCRYGAKCQFAH----GLGELRQ----------PSRH----------- 137
Query: 93 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWE----LGKPIAISHDDPRAFGAVPGRMGGR 148
K+ +C++ C +G +CHF H E G P + +F +P G R
Sbjct: 138 PKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPHVLRQSI--SFSGLPS--GRR 193
Query: 149 YEPPPA 154
PPPA
Sbjct: 194 TSPPPA 199
>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
PE=2 SV=1
Length = 367
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 247 GSAAHPLSSNFKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 286
GS + S+ +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 117 GSGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELR 157
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 28/111 (25%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGP 92
K++ C F + C +GE C F H G++ + + P+
Sbjct: 128 KTELCRPFEESGTCKYGEKCQFAH----GFHELRSLTRHPK------------------- 164
Query: 93 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWE---LGKPIAISHDDPRAFGA 140
K+ +C ++ C +G +CHF H E + D RAFGA
Sbjct: 165 --YKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGGGASGDLRAFGA 213
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 93 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 124
T K+ +C + CK+G+KC FAHG EL
Sbjct: 125 TRYKTELCRPFEESGTCKYGEKCQFAHGFHEL 156
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 257 FKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 286
+KT+LC F G C +G RCHF H A E R
Sbjct: 165 YKTELCRTFHTIGFCPYGPRCHFIHNADERR 195
>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1
Length = 324
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 256 NFKTKLCGNFAK-GSCTFGDRCHFAHGAAELRKTA 289
+KT+LC F++ G C +G +C FAHG ELR+ +
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQAS 135
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 256 NFKTKLCGNF-AKGSCTFGDRCHFAHGAAE 284
+KT+LC F +G C +G RCHF H +E
Sbjct: 139 KYKTELCHKFYLQGRCPYGSRCHFIHNPSE 168
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVP---APSRNMAVPPPAS 89
K++ C KF+ CP+G CHF+H A L Q++ PS PPPAS
Sbjct: 141 KTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPHVLRQSISFSGLPSGRRTSPPPAS 200
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 45/126 (35%), Gaps = 33/126 (26%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGP 92
K++ C F + C +G C F H G + Q P+
Sbjct: 103 KTELCRTFSESGRCRYGAKCQFAH----GLGELRQASRHPK------------------- 139
Query: 93 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWE----LGKPIAISHDDPRAFGAVPGRMGGR 148
K+ +C++ C +G +CHF H E G P + +F +P G R
Sbjct: 140 --YKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPHVLRQSI--SFSGLPS--GRR 193
Query: 149 YEPPPA 154
PPPA
Sbjct: 194 TSPPPA 199
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 95 VKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 124
K+ +C + + C++G KC FAHG EL
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGEL 131
>sp|Q99NH0|ANR17_MOUSE Ankyrin repeat domain-containing protein 17 OS=Mus musculus
GN=Ankrd17 PE=1 SV=2
Length = 2603
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 168 KISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAM 227
K+SV +++ +IG+GG N I TGA + I + R I + G E +QA+ +
Sbjct: 1725 KVSVPSTVISRVIGRGGCNINAIRECTGAHIDIDKQKDKTGDRIITIRGGTESTRQATQL 1784
Query: 228 VRELI 232
+ LI
Sbjct: 1785 INALI 1789
>sp|O75179|ANR17_HUMAN Ankyrin repeat domain-containing protein 17 OS=Homo sapiens
GN=ANKRD17 PE=1 SV=3
Length = 2603
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 168 KISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAM 227
K+SV +++ +IG+GG N I TGA + I + R I + G E +QA+ +
Sbjct: 1729 KVSVPSTVISRVIGRGGCNINAIREFTGAHIDIDKQKDKTGDRIITIRGGTESTRQATQL 1788
Query: 228 VRELI 232
+ LI
Sbjct: 1789 INALI 1793
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
PE=1 SV=3
Length = 494
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 254 SSNFKTKLCGNFAK-GSCTFGDRCHFAHGAAELR 286
S+ +KT+LC F + G+C +G++C FAHG ELR
Sbjct: 151 STRYKTELCRPFEESGTCKYGEKCQFAHGFHELR 184
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 26/108 (24%)
Query: 33 KSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGP 92
K++ C F + C +GE C F H G++ + + P+
Sbjct: 155 KTELCRPFEESGTCKYGEKCQFAH----GFHELRSLTRHPK------------------- 191
Query: 93 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWELG-KPIAISHDDPRAFG 139
K+ +C ++ C +G +CHF H E P + D RAFG
Sbjct: 192 --YKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRAFG 237
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 93 TVVKSRMCNRLNSAEGCKFGDKCHFAHGEWEL 124
T K+ +C + CK+G+KC FAHG EL
Sbjct: 152 TRYKTELCRPFEESGTCKYGEKCQFAHGFHEL 183
Score = 34.7 bits (78), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 257 FKTKLCGNF-AKGSCTFGDRCHFAHGAAELR 286
+KT+LC F G C +G RCHF H A E R
Sbjct: 192 YKTELCRTFHTIGFCPYGPRCHFIHNADERR 222
>sp|Q4VBT5|MKRN1_DANRE Probable E3 ubiquitin-protein ligase makorin-1 OS=Danio rerio
GN=mkrn1 PE=2 SV=1
Length = 439
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 250 AHPLSSNFKTKLCGNFAKGSCTFGDRCHFAH 280
+H LSS +T +C F KG C FGDRC + H
Sbjct: 41 SHDLSSCKQTMICKFFQKGCCAFGDRCRYEH 71
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
Query: 9 PETGINANGV-----FKKSKHESESGV-----GSKSKPCTKFFSTAG-CPFGESCHFLHY 57
PE I +N V + + K E + + G +KPC F G CPFG +C + H
Sbjct: 287 PECRITSNFVIPSEYWVEDKEEKQQLIQKYKDGMGTKPCRYFDEGRGTCPFGANCFYKHA 346
Query: 58 FPGG 61
FP G
Sbjct: 347 FPDG 350
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,588,471
Number of Sequences: 539616
Number of extensions: 4968993
Number of successful extensions: 19226
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 18153
Number of HSP's gapped (non-prelim): 1074
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)