BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022899
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V87|A Chain A, Solution Structure Of The Ring-H2 Finger Domain Of Mouse
Deltex Protein 2
Length = 114
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 16/64 (25%)
Query: 11 CSICWEEASETCGRS------------IVRL-QCSHLFHLDCIGSAF---NVTGIMQCPN 54
C IC E+ + G S + RL +CSH FHL C+ + + N G +QCP+
Sbjct: 28 CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS 87
Query: 55 CREV 58
C+ +
Sbjct: 88 CKTI 91
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 6 AAATLCSICWEEASETC--GRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60
A C IC + SE GR IV +C H+F C+ + CP CR+ N
Sbjct: 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCRKKIN 55
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 11 CSICWEEASETC--GRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60
C IC + SE GR IV +C H+F C+ + CP CR+ N
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCRKKIN 62
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 11 CSICWEEASETC--GRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60
C IC + SE GR IV +C H+F C+ + CP CR+ N
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCRKKIN 67
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
C+IC E G + RL C HLFH C+ +CP CR
Sbjct: 17 CTICLSILEE--GEDVRRLPCMHLFHQVCVDQWLITN--KKCPICR 58
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 5 AAAATLCSICWEEASETC--GRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60
+ C IC + SE GR IV +C H+F C+ + CP CR+ N
Sbjct: 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCRKKIN 59
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 5 AAAATLCSICWEEASETC--GRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60
+ C IC + SE GR IV +C H+F C+ + CP CR+ N
Sbjct: 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCRKKIN 124
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 28.1 bits (61), Expect = 6.6, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 10 LCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNV--TGIMQCPNCRE 57
CS+C G+ ++ CS ++HLDC+ G+ CP C++
Sbjct: 7 FCSVC-----RKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Query: 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQ---CPNCREVENG 61
C +C E+ + G S+ +L C+HLFH CI V + Q CP CR+ G
Sbjct: 18 CPVCKEDYA--LGESVRQLPCNHLFHDSCI-----VPWLEQHDSCPVCRKSLTG 64
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger
Protein 21a
Length = 56
Score = 27.7 bits (60), Expect = 8.3, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 10 LCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNV--TGIMQCPNCRE 57
CS+C G+ ++ CS ++HLDC+ G+ CP C++
Sbjct: 11 FCSVC-----RKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.471
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,744,146
Number of Sequences: 62578
Number of extensions: 321009
Number of successful extensions: 698
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 18
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)