BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022899
(290 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4R6Y5|ZNRF4_MACFA Zinc/RING finger protein 4 OS=Macaca fascicularis GN=ZNRF4 PE=2
SV=1
Length = 429
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 10 LCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVENGVWMRFEIN 69
LC+IC +E E G + L CSH +H CI F+ CP C++ G F+ +
Sbjct: 308 LCAICLDEYEE--GDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSVAGTEDSFD-S 364
Query: 70 DNDEITDED 78
D +DED
Sbjct: 365 TTDSFSDED 373
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 37.7 bits (86), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 3 DEAAAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
D AA C IC EE T S RL CSH+FH C+ S F CP CR
Sbjct: 284 DLAAMDATCIICREEM--TVDASPKRLPCSHVFHAHCLRSWFQRQQ--TCPTCR 333
>sp|Q9UKV5|AMFR_HUMAN E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2
Length = 643
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 16/77 (20%)
Query: 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVENGVWMRFEIND 70
C+ICW+ ++ +L C HLFH C+ S CP CR M I D
Sbjct: 341 CAICWDSM-----QAARKLPCGHLFHNSCLRSWLEQDT--SCPTCR-------MSLNIAD 386
Query: 71 NDEITDE--DEWPDDNL 85
N+ + +E E D+NL
Sbjct: 387 NNRVREEHQGENLDENL 403
>sp|Q86UW9|DTX2_HUMAN Probable E3 ubiquitin-protein ligase DTX2 OS=Homo sapiens GN=DTX2
PE=1 SV=3
Length = 622
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 16/64 (25%)
Query: 11 CSICWEEASETCGRSIVR-------------LQCSHLFHLDCIGSAF---NVTGIMQCPN 54
C IC E+ S G S V +CSH FHL C+ + + N G +QCP+
Sbjct: 412 CIICMEKLSTASGYSDVTDSKAIGSLAVGHLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS 471
Query: 55 CREV 58
C+ +
Sbjct: 472 CKTI 475
>sp|Q8WWF5|ZNRF4_HUMAN Zinc/RING finger protein 4 OS=Homo sapiens GN=ZNRF4 PE=2 SV=3
Length = 429
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 10 LCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVENGVWMRFEIN 69
LC+IC +E E G + L CSH +H CI F+ CP C++ F+ +
Sbjct: 308 LCAICLDEYEE--GDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSVAATEDSFD-S 364
Query: 70 DNDEITDED 78
DED
Sbjct: 365 TTYSFRDED 373
>sp|Q8VYC8|RIN2_ARATH E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2
PE=1 SV=1
Length = 578
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFN--VTGIMQCPNCRE 57
C+IC E ++ RL C+HLFHL C+ S + + + CP CR+
Sbjct: 337 CAICREPMAKAK-----RLHCNHLFHLGCLRSWLDQGLNEVYSCPTCRK 380
>sp|Q75DC2|ASR1_ASHGO Alcohol-sensitive RING finger protein 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=ASR1 PE=3 SV=1
Length = 328
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNV-TGIMQCPNCR 56
CSICWE GR + C H +HL CI F++ +G CP CR
Sbjct: 18 CSICWESMPSGVGR---LMPCGHEYHLACIRKWFHLHSGNRSCPVCR 61
>sp|Q8W4Q5|RIN3_ARATH E3 ubiquitin protein ligase RIN3 OS=Arabidopsis thaliana GN=RIN3
PE=1 SV=2
Length = 577
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFN--VTGIMQCPNCRE 57
C+IC E ++ RL C+HLFHL C+ S + + + CP CR+
Sbjct: 337 CAICREPMAKAK-----RLHCNHLFHLGCLRSWLDQGLNEVYSCPTCRK 380
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 3 DEAAAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
++A AA C +C E E G ++ +L C HLFH CI T CP CR
Sbjct: 71 EQADAALKCPVCLLEFEE--GETVRQLPCEHLFHSSCILPWLGKTN--SCPLCR 120
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 3 DEAAAA-TLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
DE +A C IC EE T S RL CSH+FH C+ S F CP CR
Sbjct: 283 DELSAMDATCIICREEM--TVESSPKRLPCSHVFHAHCLRSWFQRQQ--TCPTCR 333
>sp|Q8R3P2|DTX2_MOUSE Probable E3 ubiquitin-protein ligase DTX2 OS=Mus musculus GN=Dtx2
PE=1 SV=2
Length = 619
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 21/79 (26%)
Query: 11 CSICWEEASETCGRS------------IVRL-QCSHLFHLDCIGSAF---NVTGIMQCPN 54
C IC E+ + G S + RL +CSH FHL C+ + + N G +QCP+
Sbjct: 409 CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS 468
Query: 55 CREV---ENGV--WMRFEI 68
C+ + + G W + E+
Sbjct: 469 CKTIYGEKTGTQPWGKMEV 487
>sp|Q77J49|UB222_WSSVS RING finger containing E3 ubiquitin-protein ligase WSV222 OS=White
spot syndrome virus (isolate Shrimp/China/Tongan/1996)
GN=WSV222 PE=1 SV=1
Length = 844
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 9 TLCSICW------EEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCRE 57
T+C +C E +T S ++ C H H +C+ G +QCP CRE
Sbjct: 306 TMCGVCATSVEEDENEGKTTSLSWYQMNCKHYIHCECLMGMCAAAGNVQCPMCRE 360
>sp|Q13702|RAPSN_HUMAN 43 kDa receptor-associated protein of the synapse OS=Homo sapiens
GN=RAPSN PE=1 SV=4
Length = 412
Score = 35.4 bits (80), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
C +C E E R + L CSH+FHL C+ + G CPNCR
Sbjct: 363 CGLCGESIGEKNSR-LQALPCSHIFHLRCLQN----NGTRSCPNCR 403
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 3 DEAAAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
++A AA C +C E E G ++ +L C HLFH CI T CP CR
Sbjct: 71 EQADAALKCPVCLLEFEE--GETVRQLPCEHLFHSACILPWLGKTN--SCPLCR 120
>sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP2 OS=Homo sapiens GN=MYCBP2
PE=1 SV=3
Length = 4640
Score = 35.4 bits (80), Expect = 0.54, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFN--------VTGIMQCPNCREV 58
A +C IC+ EA ++L CSH+FHL C G + CP C+
Sbjct: 4386 ADDMCMICFTEALSAA--PAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNK 4443
Query: 59 ENGVWMR 65
N + ++
Sbjct: 4444 INHIVLK 4450
>sp|P12672|RAPSN_MOUSE 43 kDa receptor-associated protein of the synapse OS=Mus musculus
GN=Rapsn PE=2 SV=4
Length = 412
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
C +C E E R + L CSH+FHL C+ + G CPNCR
Sbjct: 363 CGLCGESIGERNSR-LQALPCSHIFHLRCLQN----NGTRSCPNCR 403
>sp|Q7TPH6|MYCB2_MOUSE Probable E3 ubiquitin-protein ligase MYCBP2 OS=Mus musculus GN=Mycbp2
PE=1 SV=2
Length = 4711
Score = 35.0 bits (79), Expect = 0.62, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFN--------VTGIMQCPNCREV 58
A +C IC+ EA ++L CSH+FHL C G + CP C+
Sbjct: 4457 ADDMCMICFTEALSAA--PAIQLDCSHVFHLQCCRRVLENRWLGPRITFGFISCPICKNK 4514
Query: 59 ENGVWMR 65
N + ++
Sbjct: 4515 INHIVLK 4521
>sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG
PE=1 SV=2
Length = 1625
Score = 35.0 bits (79), Expect = 0.65, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTG--IMQCPNCREV 58
CS+C +E R + LQC H F DC+ F+ + + CP CR V
Sbjct: 10 CSVCHTRYNED-ERVPLLLQCGHGFCKDCLSKMFSTSSDTTLTCPRCRHV 58
>sp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41
PE=1 SV=1
Length = 236
Score = 34.7 bits (78), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 5 AAAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR-EVE 59
AA+AT C++C E ++ C H+FH+DC+ + T CP CR EVE
Sbjct: 102 AASATECAVCLSVLKEQ-DKARELPNCKHIFHVDCVDTWL--TTCSTCPVCRTEVE 154
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 34.7 bits (78), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 10/54 (18%)
Query: 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQ---CPNCREVENG 61
C +C E+ T G S+ +L C+HLFH DCI + + Q CP CR+ +G
Sbjct: 228 CPVCKEDY--TVGESVRQLPCNHLFHNDCI-----IPWLEQHDTCPVCRKSLSG 274
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 34.7 bits (78), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 10/54 (18%)
Query: 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQ---CPNCREVENG 61
C +C E+ T G S+ +L C+HLFH DCI + + Q CP CR+ +G
Sbjct: 227 CPVCKEDY--TVGESVRQLPCNHLFHNDCI-----IPWLEQHDTCPVCRKSLSG 273
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 34.7 bits (78), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 4 EAAAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
E A CS+C E +E G + +L CSH +H+ CI + CP CR
Sbjct: 696 ENDALKTCSVCITEYTE--GNKLRKLPCSHEYHIHCIDRWLSENST--CPICR 744
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 34.7 bits (78), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 4 EAAAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
E A CS+C E +E G + +L CSH +H+ CI + CP CR
Sbjct: 561 ENDALKTCSVCITEYTE--GNKLRKLPCSHEYHIHCIDRWLSENST--CPICR 609
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 4 EAAAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
E A CS+C E +E G + +L CSH +H+ CI + CP CR
Sbjct: 578 ENDALKTCSVCITEYTE--GNKLRKLPCSHEYHVHCIDRWLSENST--CPICR 626
>sp|O42393|RAPSN_CHICK 43 kDa receptor-associated protein of the synapse OS=Gallus gallus
GN=RAPSN PE=2 SV=3
Length = 412
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58
C +C E E + L CSH FHL C+ G CPNCR +
Sbjct: 363 CGMCGESIGEK-NNQLQALPCSHFFHLKCL----QTNGTRGCPNCRRL 405
>sp|Q4R5T4|RNF32_MACFA RING finger protein 32 OS=Macaca fascicularis GN=RNF32 PE=2 SV=1
Length = 362
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCRE 57
C IC EE R V L CSH+FH C+ + T CP CR+
Sbjct: 127 CPICKEEFE---LRPQVLLSCSHVFHRACLQAFEKFTNKKTCPLCRK 170
>sp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2
SV=1
Length = 376
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV--ENGVWMRFEI 68
C++C E SE ++ + CSH FHL+CI + CP CR G M +
Sbjct: 143 CAVCLCEFSEKDKLRLLPM-CSHAFHLNCIDTWLQSNST--CPLCRGTLFSPGFSMENPM 199
Query: 69 NDNDEITDEDEWPDDN 84
D D+I +++E +N
Sbjct: 200 FDFDDIREDEEGVTEN 215
>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2
SV=1
Length = 381
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 3 DEAAAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
D++ + CS+C E E I+ C H+FH+DCI + G CP CR
Sbjct: 126 DQSKNSQECSVCLNEFQEDEKLRIIP-NCCHVFHIDCID--IWLQGNANCPLCR 176
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 4 EAAAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58
E A CS+C E +E G + +L CSH +H+ CI + CP CR
Sbjct: 563 ENDALKTCSVCITEYTE--GNKLRKLPCSHEYHVHCIDRWLSENST--CPICRRA 613
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 4 EAAAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
E A CS+C E +E G + +L CSH +H+ CI + CP CR
Sbjct: 539 ENDALKTCSVCITEYTE--GNKLRKLPCSHEYHVHCIDRWLSENST--CPICR 587
>sp|Q60B95|Y585_METCA UPF0061 protein MCA0585 OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=MCA0585 PE=3 SV=1
Length = 504
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 157 CGNFIGANQPFVASAAQRAAQYGAGGLRNFVSVGHRAILQ 196
C + A P +A A RAA+ G LR + SV HRA+++
Sbjct: 309 CERLLQAVSPLLADAPGRAAEIGQDLLRRYASVYHRAVMR 348
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
CS+C E E V +C H+FH+DCI + F CP CR
Sbjct: 113 CSVCLSEFEED-DEGRVLPKCGHVFHVDCIDTWFRSRS--SCPLCR 155
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 3 DEAAAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
+E+ C+IC + G + RL C HLFH C+ ++ +CP CR
Sbjct: 287 EESDTDEKCTICLSMLED--GEDVRRLPCMHLFHQLCVDQWLAMSK--KCPICR 336
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVENGVWMRFEIND 70
CS+C E+ T G + L C H FH CI G CP C+ + W +
Sbjct: 211 CSVCLEQV--TVGEIVRTLPCLHQFHAGCIDPWLRQQGT--CPVCKFRAHSGW-----QE 261
Query: 71 NDEITDEDEWPDDNLPDMI 89
DEI DD+ DM+
Sbjct: 262 QDEI-------DDDASDMV 273
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 3 DEAAAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
+E+ C+IC + G + RL C HLFH C+ ++ +CP CR
Sbjct: 286 EESDTDEKCTICLSMLED--GEDVRRLPCMHLFHQLCVDQWLAMSK--KCPICR 335
>sp|Q9BWF2|TRAIP_HUMAN TRAF-interacting protein OS=Homo sapiens GN=TRAIP PE=1 SV=1
Length = 469
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 10 LCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
LC+IC + + R + + C H FHL C+ F CP CR
Sbjct: 6 LCTICSDFFDHS--RDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCR 50
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
A +C IC EE R L C+H+FH C+ S F CP CR
Sbjct: 280 AMDNVCIICREEMVSGAKR----LPCNHIFHTSCLRSWFQRQ--QTCPTCR 324
>sp|Q9ZT49|ATL45_ARATH RING-H2 finger protein ATL45 OS=Arabidopsis thaliana GN=ATL45 PE=2
SV=1
Length = 200
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 2 VDEAAAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58
V + ++T C+IC E SE I+ L CSH FH+ CI T CP+CR +
Sbjct: 104 VGDGDSSTECAICITEFSEGEEIRILPL-CSHAFHVACIDKWL--TSRSSCPSCRRI 157
>sp|Q9DBY1|SYVN1_MOUSE E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1
PE=1 SV=3
Length = 612
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
A +C IC EE R L C+H+FH C+ S F CP CR
Sbjct: 286 AVDNVCIICREEMVTGAKR----LPCNHIFHTSCLRSWFQRQ--QTCPTCR 330
>sp|Q6NRL6|SYVNA_XENLA E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis
GN=syvn1-a PE=2 SV=1
Length = 605
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
A +C IC EE R L C+H+FH C+ S F CP CR
Sbjct: 280 AMDNVCIICREEMVTGAKR----LPCNHIFHTSCLRSWFQRQ--QTCPTCR 324
>sp|Q9H0A6|RNF32_HUMAN RING finger protein 32 OS=Homo sapiens GN=RNF32 PE=1 SV=1
Length = 362
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCRE 57
C IC EE R V L CSH+FH C+ + T CP CR+
Sbjct: 127 CPICKEEFE---LRPQVLLSCSHVFHKACLQAFEKFTNKKTCPLCRK 170
>sp|A5D8S5|SH3R1_DANRE E3 ubiquitin-protein ligase SH3RF1 OS=Danio rerio GN=sh3rf1 PE=2
SV=2
Length = 867
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 2 VDEAAAATL--CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCRE-V 58
+DE+A L C +C E T L C H F C+ G ++CP CR V
Sbjct: 1 MDESALLDLLECPVCLERLDATAKV----LPCQHTFCRRCLLGIVGSRGELRCPECRTLV 56
Query: 59 ENGV 62
E+GV
Sbjct: 57 ESGV 60
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 3 DEAAAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
++A C +C E E S+ + C HLFH CI N T CP CR
Sbjct: 71 EQADKGVKCPVCLLEFEEQ--ESVREMPCKHLFHTGCILPWLNKTN--SCPLCR 120
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 10 LCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
+C IC EE R L C+H+FH C+ S F CP CR
Sbjct: 290 VCIICREEMVTGAKR----LPCNHIFHTSCLRSWFQRQQ--TCPTCR 330
>sp|Q8VIG6|TRAIP_MOUSE TRAF-interacting protein OS=Mus musculus GN=Traip PE=1 SV=2
Length = 470
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 10 LCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56
LC+IC + + R + + C H FHL C+ F CP CR
Sbjct: 6 LCTICSDFFDHS--RDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCR 50
>sp|Q20318|LIN49_CAEEL Protein lin-49 OS=Caenorhabditis elegans GN=lin-49 PE=1 SV=1
Length = 1042
Score = 33.1 bits (74), Expect = 2.8, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 10 LCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNC 55
+C+IC + + C + + +C+ H DC G F G ++C C
Sbjct: 197 VCNICLDGDTSNCNQIVYCDRCNLSVHQDCYGIPFIPEGCLECRRC 242
>sp|Q6PDK8|DTX4_MOUSE E3 ubiquitin-protein ligase DTX4 OS=Mus musculus GN=Dtx4 PE=1 SV=2
Length = 616
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 14/62 (22%)
Query: 11 CSICWEEASETCGRS----------IVRL-QCSHLFHLDCIGSAFN---VTGIMQCPNCR 56
C+IC E + G + +L +C H++H+ C+ + +N G +QCP C+
Sbjct: 406 CTICMERLTAPSGYKGPQPTVKPDLVGKLSRCGHIYHIYCLVAMYNNGNKDGSLQCPTCK 465
Query: 57 EV 58
+
Sbjct: 466 TI 467
>sp|Q86Y01|DTX1_HUMAN E3 ubiquitin-protein ligase DTX1 OS=Homo sapiens GN=DTX1 PE=1 SV=1
Length = 620
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 16/64 (25%)
Query: 11 CSICWEEASETCGRSIV------------RL-QCSHLFHLDCIGSAF---NVTGIMQCPN 54
C+IC E G V RL +C H++HL C+ + + N G +QCP
Sbjct: 411 CTICMERLVTASGYEGVLRHKGVRPELVGRLGRCGHMYHLLCLVAMYSNGNKDGSLQCPT 470
Query: 55 CREV 58
C+ +
Sbjct: 471 CKAI 474
>sp|Q61010|DTX1_MOUSE E3 ubiquitin-protein ligase DTX1 OS=Mus musculus GN=Dtx1 PE=1 SV=2
Length = 627
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 16/64 (25%)
Query: 11 CSICWEEASETCGRSIV------------RL-QCSHLFHLDCIGSAF---NVTGIMQCPN 54
C+IC E G V RL +C H++HL C+ + + N G +QCP
Sbjct: 418 CTICMERLVTASGYEGVLRNKSVRPELVGRLGRCGHMYHLLCLVAMYSNGNKDGSLQCPT 477
Query: 55 CREV 58
C+ +
Sbjct: 478 CKAI 481
>sp|O82353|ATL67_ARATH RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2
SV=1
Length = 214
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 9 TLCSICWEEASETCGRSIVRL--QCSHLFHLDCIGSAFNVTGIMQCPNCR 56
T CSIC E E ++R+ +C H FHL C+ + + G CP CR
Sbjct: 136 TTCSICLCEYKEA---EMLRMMPECKHYFHLCCLDAWLKLNG--SCPVCR 180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,115,251
Number of Sequences: 539616
Number of extensions: 5070272
Number of successful extensions: 10165
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 135
Number of HSP's that attempted gapping in prelim test: 10133
Number of HSP's gapped (non-prelim): 158
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)