Query 022899
Match_columns 290
No_of_seqs 182 out of 1675
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:57:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022899.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022899hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.1 3.1E-11 6.8E-16 83.0 2.8 44 9-56 1-44 (44)
2 KOG4628 Predicted E3 ubiquitin 98.9 1.5E-09 3.2E-14 105.2 4.4 46 9-57 230-275 (348)
3 PF12678 zf-rbx1: RING-H2 zinc 98.8 3E-09 6.5E-14 81.5 4.2 47 8-56 19-73 (73)
4 PF15227 zf-C3HC4_4: zinc fing 98.7 1.2E-08 2.6E-13 70.8 3.5 40 11-55 1-42 (42)
5 PHA02929 N1R/p28-like protein; 98.6 4.2E-08 9.1E-13 90.9 4.2 51 7-59 173-226 (238)
6 KOG0823 Predicted E3 ubiquitin 98.6 5.3E-08 1.2E-12 89.7 4.2 62 7-73 46-111 (230)
7 PHA02926 zinc finger-like prot 98.5 7E-08 1.5E-12 89.1 3.6 53 6-58 168-228 (242)
8 PLN03208 E3 ubiquitin-protein 98.5 1.4E-07 2.9E-12 85.2 5.2 47 7-58 17-77 (193)
9 PF00097 zf-C3HC4: Zinc finger 98.5 9.2E-08 2E-12 64.4 2.9 41 11-55 1-41 (41)
10 PF13920 zf-C3HC4_3: Zinc fing 98.5 1.3E-07 2.9E-12 66.7 3.3 45 8-59 2-47 (50)
11 cd00162 RING RING-finger (Real 98.4 1.9E-07 4.2E-12 61.3 3.5 43 10-57 1-43 (45)
12 PF13923 zf-C3HC4_2: Zinc fing 98.4 1.7E-07 3.7E-12 63.2 2.9 39 11-55 1-39 (39)
13 COG5243 HRD1 HRD ubiquitin lig 98.4 1.3E-07 2.8E-12 92.7 3.2 52 5-58 284-343 (491)
14 PF12861 zf-Apc11: Anaphase-pr 98.4 2.8E-07 6.2E-12 73.6 4.1 52 7-58 20-80 (85)
15 KOG0317 Predicted E3 ubiquitin 98.4 1.7E-07 3.6E-12 88.9 2.8 46 8-60 239-284 (293)
16 PF14634 zf-RING_5: zinc-RING 98.3 5.6E-07 1.2E-11 62.3 3.4 44 10-57 1-44 (44)
17 smart00184 RING Ring finger. E 98.3 8.1E-07 1.8E-11 56.3 3.3 39 11-55 1-39 (39)
18 KOG0802 E3 ubiquitin ligase [P 98.3 4E-07 8.6E-12 92.1 2.5 49 7-57 290-338 (543)
19 KOG0320 Predicted E3 ubiquitin 98.3 5.2E-07 1.1E-11 80.8 2.8 46 7-57 130-175 (187)
20 KOG0825 PHD Zn-finger protein 98.1 1.7E-06 3.7E-11 91.0 2.1 122 10-163 125-269 (1134)
21 PF13445 zf-RING_UBOX: RING-ty 98.1 3.3E-06 7.2E-11 59.3 2.9 41 11-53 1-43 (43)
22 smart00504 Ubox Modified RING 98.0 5.7E-06 1.2E-10 59.7 3.6 43 9-58 2-44 (63)
23 TIGR00599 rad18 DNA repair pro 98.0 5.2E-06 1.1E-10 82.0 3.6 45 7-58 25-69 (397)
24 KOG2177 Predicted E3 ubiquitin 97.9 3E-06 6.6E-11 72.5 1.4 43 7-56 12-54 (386)
25 KOG2164 Predicted E3 ubiquitin 97.9 5.1E-06 1.1E-10 83.9 2.5 46 8-58 186-234 (513)
26 KOG1039 Predicted E3 ubiquitin 97.9 6.7E-06 1.5E-10 80.0 2.3 52 7-58 160-219 (344)
27 KOG1734 Predicted RING-contain 97.9 5.1E-06 1.1E-10 78.9 1.4 53 6-58 222-279 (328)
28 COG5194 APC11 Component of SCF 97.9 1.3E-05 2.9E-10 63.9 3.4 49 8-58 20-79 (88)
29 COG5219 Uncharacterized conser 97.7 1E-05 2.2E-10 86.8 1.2 52 6-57 1467-1520(1525)
30 KOG1645 RING-finger-containing 97.7 2.2E-05 4.8E-10 77.9 3.0 50 8-57 4-53 (463)
31 COG5574 PEX10 RING-finger-cont 97.7 2.2E-05 4.7E-10 74.0 2.3 48 7-59 214-261 (271)
32 TIGR00570 cdk7 CDK-activating 97.6 4.9E-05 1.1E-09 73.1 4.0 50 8-58 3-52 (309)
33 smart00744 RINGv The RING-vari 97.6 7.1E-05 1.5E-09 53.6 3.5 44 10-56 1-49 (49)
34 KOG0311 Predicted E3 ubiquitin 97.5 1.2E-05 2.7E-10 78.3 -2.2 47 7-58 42-88 (381)
35 KOG0287 Postreplication repair 97.4 5.6E-05 1.2E-09 73.9 1.5 43 9-58 24-66 (442)
36 KOG1493 Anaphase-promoting com 97.4 3.9E-05 8.4E-10 60.8 0.3 52 7-58 19-79 (84)
37 KOG0804 Cytoplasmic Zn-finger 97.4 6E-05 1.3E-09 75.6 1.5 46 7-57 174-219 (493)
38 KOG2930 SCF ubiquitin ligase, 97.3 7.7E-05 1.7E-09 62.0 1.4 48 8-57 46-105 (114)
39 COG5432 RAD18 RING-finger-cont 97.3 0.0001 2.2E-09 71.0 2.2 43 9-58 26-68 (391)
40 PF04564 U-box: U-box domain; 97.3 0.0003 6.5E-09 53.6 3.7 45 8-58 4-48 (73)
41 COG5540 RING-finger-containing 97.2 0.00025 5.3E-09 68.6 3.2 33 25-58 338-370 (374)
42 PF11793 FANCL_C: FANCL C-term 97.2 9.6E-05 2.1E-09 56.4 0.1 51 8-58 2-64 (70)
43 KOG0827 Predicted E3 ubiquitin 97.2 0.0002 4.4E-09 71.0 2.2 47 8-56 4-52 (465)
44 KOG0828 Predicted E3 ubiquitin 97.0 0.00025 5.4E-09 72.1 1.6 50 8-58 571-632 (636)
45 PF11789 zf-Nse: Zinc-finger o 96.9 0.00061 1.3E-08 50.4 2.5 48 3-54 6-53 (57)
46 KOG4172 Predicted E3 ubiquitin 96.9 0.00022 4.9E-09 53.4 -0.3 50 7-62 6-56 (62)
47 KOG0824 Predicted E3 ubiquitin 96.8 0.00062 1.3E-08 65.6 2.1 46 7-58 6-51 (324)
48 PF14835 zf-RING_6: zf-RING of 96.7 0.00039 8.5E-09 53.3 -0.0 43 8-58 7-49 (65)
49 KOG4265 Predicted E3 ubiquitin 96.6 0.0016 3.4E-08 63.8 3.0 44 8-58 290-334 (349)
50 PHA02825 LAP/PHD finger-like p 96.1 0.0069 1.5E-07 53.8 4.0 52 1-58 1-57 (162)
51 KOG2879 Predicted E3 ubiquitin 95.9 0.0053 1.1E-07 58.7 2.8 46 7-57 238-284 (298)
52 KOG1941 Acetylcholine receptor 95.9 0.0027 5.8E-08 63.4 0.9 51 9-60 366-416 (518)
53 KOG0978 E3 ubiquitin ligase in 95.9 0.0023 5E-08 67.5 0.2 45 8-58 643-687 (698)
54 KOG4159 Predicted E3 ubiquitin 95.7 0.0055 1.2E-07 61.0 2.1 44 7-57 83-126 (398)
55 KOG1785 Tyrosine kinase negati 95.7 0.005 1.1E-07 61.8 1.7 48 9-61 370-417 (563)
56 PHA03096 p28-like protein; Pro 95.4 0.0089 1.9E-07 57.1 2.0 48 9-56 179-230 (284)
57 KOG1002 Nucleotide excision re 94.7 0.014 3.1E-07 60.3 1.5 50 2-56 530-582 (791)
58 PF12906 RINGv: RING-variant d 94.5 0.018 3.8E-07 40.9 1.2 42 11-55 1-47 (47)
59 KOG2660 Locus-specific chromos 94.1 0.014 3.1E-07 56.8 -0.0 47 8-60 15-61 (331)
60 PHA02862 5L protein; Provision 94.1 0.041 8.8E-07 48.5 2.8 49 8-62 2-55 (156)
61 KOG4185 Predicted E3 ubiquitin 93.9 0.04 8.6E-07 51.3 2.5 49 9-58 4-53 (296)
62 KOG0297 TNF receptor-associate 93.6 0.031 6.7E-07 55.2 1.3 45 7-58 20-65 (391)
63 PF14570 zf-RING_4: RING/Ubox 93.2 0.081 1.8E-06 38.4 2.6 46 11-58 1-46 (48)
64 KOG4445 Uncharacterized conser 93.0 0.034 7.4E-07 54.1 0.5 36 8-45 115-150 (368)
65 KOG1952 Transcription factor N 92.9 0.041 8.8E-07 59.3 1.1 50 6-58 189-245 (950)
66 KOG1428 Inhibitor of type V ad 92.8 0.062 1.3E-06 61.2 2.2 49 7-57 3485-3541(3738)
67 COG5222 Uncharacterized conser 91.4 0.1 2.2E-06 51.0 1.8 43 9-57 275-318 (427)
68 KOG4692 Predicted E3 ubiquitin 91.1 0.18 3.9E-06 50.3 3.1 46 6-58 420-465 (489)
69 PF08746 zf-RING-like: RING-li 90.7 0.13 2.8E-06 36.1 1.2 43 11-55 1-43 (43)
70 PF10367 Vps39_2: Vacuolar sor 90.7 0.11 2.3E-06 40.6 1.0 32 7-41 77-108 (109)
71 KOG1814 Predicted E3 ubiquitin 90.5 0.16 3.6E-06 51.1 2.3 47 8-56 184-236 (445)
72 PF05883 Baculo_RING: Baculovi 90.4 0.11 2.5E-06 44.9 0.9 35 8-44 26-66 (134)
73 COG5152 Uncharacterized conser 90.1 0.12 2.6E-06 48.0 0.8 46 9-61 197-242 (259)
74 COG5236 Uncharacterized conser 89.9 0.25 5.4E-06 49.2 2.9 50 8-62 61-110 (493)
75 PF10272 Tmpp129: Putative tra 89.7 0.25 5.4E-06 48.8 2.8 28 31-58 311-349 (358)
76 KOG1001 Helicase-like transcri 89.4 0.19 4.2E-06 53.2 1.9 44 9-58 455-498 (674)
77 KOG2932 E3 ubiquitin ligase in 89.1 0.21 4.6E-06 48.9 1.8 27 26-56 103-130 (389)
78 KOG2114 Vacuolar assembly/sort 87.7 0.3 6.6E-06 52.9 2.0 42 8-58 840-881 (933)
79 KOG1813 Predicted E3 ubiquitin 85.6 0.35 7.7E-06 46.9 1.0 46 9-61 242-287 (313)
80 KOG3039 Uncharacterized conser 85.4 0.72 1.6E-05 44.1 3.0 47 7-57 220-267 (303)
81 KOG4739 Uncharacterized protei 85.1 0.37 8.1E-06 45.2 0.9 45 9-60 4-48 (233)
82 PF04641 Rtf2: Rtf2 RING-finge 84.9 1 2.2E-05 42.0 3.7 47 7-58 112-159 (260)
83 KOG3161 Predicted E3 ubiquitin 84.8 0.36 7.9E-06 51.2 0.8 43 8-56 11-53 (861)
84 KOG0826 Predicted E3 ubiquitin 84.3 0.85 1.8E-05 45.0 3.0 43 6-55 298-341 (357)
85 KOG2817 Predicted E3 ubiquitin 84.1 0.91 2E-05 45.5 3.1 46 8-56 334-381 (394)
86 KOG3800 Predicted E3 ubiquitin 84.0 0.97 2.1E-05 43.8 3.2 48 10-58 2-49 (300)
87 KOG1609 Protein involved in mR 82.8 0.9 2E-05 41.7 2.4 50 8-58 78-132 (323)
88 KOG3002 Zn finger protein [Gen 82.2 0.75 1.6E-05 44.4 1.7 40 8-58 48-89 (299)
89 KOG1812 Predicted E3 ubiquitin 81.5 0.86 1.9E-05 45.2 1.9 46 7-53 145-194 (384)
90 KOG1940 Zn-finger protein [Gen 81.3 0.95 2.1E-05 43.4 2.0 47 8-57 158-204 (276)
91 PF14569 zf-UDP: Zinc-binding 81.3 2.8 6E-05 33.6 4.3 52 7-59 8-61 (80)
92 PLN02189 cellulose synthase 80.8 1.8 3.8E-05 48.2 4.1 52 8-60 34-87 (1040)
93 KOG3970 Predicted E3 ubiquitin 79.6 1.7 3.7E-05 41.3 3.0 48 7-57 49-102 (299)
94 PF07800 DUF1644: Protein of u 79.6 2 4.4E-05 38.4 3.4 33 8-45 2-47 (162)
95 PLN02436 cellulose synthase A 78.2 2.3 5E-05 47.5 3.9 52 8-60 36-89 (1094)
96 PLN02400 cellulose synthase 76.6 2 4.4E-05 48.0 3.0 52 8-60 36-89 (1085)
97 KOG4362 Transcriptional regula 75.9 0.5 1.1E-05 50.3 -1.8 46 7-57 20-66 (684)
98 COG5175 MOT2 Transcriptional r 75.8 1.9 4.2E-05 43.0 2.4 49 7-58 13-62 (480)
99 KOG2034 Vacuolar sorting prote 75.8 1.4 3.1E-05 48.1 1.5 36 7-45 816-851 (911)
100 COG5220 TFB3 Cdk activating ki 75.5 1.2 2.5E-05 42.7 0.7 56 1-58 1-62 (314)
101 KOG3053 Uncharacterized conser 75.4 1.4 3E-05 42.4 1.2 52 6-58 18-80 (293)
102 KOG0298 DEAD box-containing he 75.2 1 2.2E-05 51.0 0.2 44 9-58 1154-1197(1394)
103 KOG3268 Predicted E3 ubiquitin 72.6 2.9 6.2E-05 38.5 2.5 31 28-58 187-226 (234)
104 PLN02638 cellulose synthase A 72.5 3.6 7.8E-05 46.0 3.7 52 8-60 17-70 (1079)
105 PF14447 Prok-RING_4: Prokaryo 71.8 1.6 3.5E-05 32.6 0.6 29 25-57 19-47 (55)
106 PF05290 Baculo_IE-1: Baculovi 71.3 4.2 9.2E-05 35.6 3.1 54 7-61 79-133 (140)
107 KOG3899 Uncharacterized conser 70.7 2.4 5.2E-05 41.6 1.6 28 31-58 325-363 (381)
108 PF02891 zf-MIZ: MIZ/SP-RING z 69.6 6.1 0.00013 28.3 3.2 43 9-57 3-49 (50)
109 PLN02195 cellulose synthase A 65.4 7 0.00015 43.4 4.0 53 7-60 5-59 (977)
110 KOG3579 Predicted E3 ubiquitin 58.2 4.4 9.6E-05 39.6 0.9 41 8-53 268-315 (352)
111 COG5183 SSM4 Protein involved 57.7 7.4 0.00016 42.8 2.5 49 7-58 11-64 (1175)
112 KOG0825 PHD Zn-finger protein 57.0 8.1 0.00018 42.4 2.6 51 7-57 95-151 (1134)
113 smart00249 PHD PHD zinc finger 55.6 5.2 0.00011 26.0 0.6 31 10-43 1-32 (47)
114 PLN02915 cellulose synthase A 55.4 12 0.00027 41.9 3.7 53 7-60 14-68 (1044)
115 KOG4367 Predicted Zn-finger pr 53.6 9.7 0.00021 39.4 2.4 33 8-45 4-36 (699)
116 KOG1815 Predicted E3 ubiquitin 53.3 8.1 0.00018 38.7 1.8 36 6-45 68-103 (444)
117 KOG4185 Predicted E3 ubiquitin 52.8 2.3 4.9E-05 39.6 -2.0 49 8-57 207-264 (296)
118 KOG0309 Conserved WD40 repeat- 47.8 12 0.00025 41.1 2.1 27 26-54 1043-1069(1081)
119 KOG1100 Predicted E3 ubiquitin 45.6 10 0.00022 34.7 1.1 28 25-58 170-198 (207)
120 PF03854 zf-P11: P-11 zinc fin 45.5 13 0.00028 27.4 1.4 28 29-58 16-44 (50)
121 KOG1812 Predicted E3 ubiquitin 43.0 15 0.00032 36.5 1.9 46 8-55 306-351 (384)
122 KOG3005 GIY-YIG type nuclease 41.3 14 0.0003 35.7 1.3 51 8-58 182-241 (276)
123 KOG4275 Predicted E3 ubiquitin 40.1 6.8 0.00015 38.5 -1.0 27 26-58 313-340 (350)
124 KOG3799 Rab3 effector RIM1 and 39.0 9.7 0.00021 33.7 -0.1 67 7-75 64-138 (169)
125 KOG0827 Predicted E3 ubiquitin 38.1 2.4 5.3E-05 42.8 -4.4 47 8-57 196-242 (465)
126 KOG1571 Predicted E3 ubiquitin 37.4 22 0.00048 35.5 2.0 29 25-58 317-345 (355)
127 KOG0269 WD40 repeat-containing 37.3 30 0.00065 37.9 3.1 40 9-54 780-820 (839)
128 KOG2066 Vacuolar assembly/sort 35.1 15 0.00032 40.2 0.4 37 9-45 785-823 (846)
129 KOG4718 Non-SMC (structural ma 33.3 25 0.00053 33.2 1.6 42 8-56 181-223 (235)
130 PF10497 zf-4CXXC_R1: Zinc-fin 32.9 61 0.0013 26.7 3.7 53 6-58 5-70 (105)
131 KOG2231 Predicted E3 ubiquitin 31.0 55 0.0012 35.3 3.8 43 10-57 2-49 (669)
132 COG5109 Uncharacterized conser 27.8 46 0.00099 33.3 2.4 45 10-56 338-383 (396)
133 PF06906 DUF1272: Protein of u 25.5 51 0.0011 25.0 1.8 41 10-56 7-48 (57)
134 KOG2068 MOT2 transcription fac 25.3 48 0.001 32.8 2.1 47 9-58 250-296 (327)
135 PF04710 Pellino: Pellino; In 23.8 26 0.00057 35.6 0.0 31 25-58 303-337 (416)
136 KOG3258 Parvulin-like peptidyl 23.4 44 0.00096 28.7 1.3 43 199-241 78-131 (133)
137 KOG1829 Uncharacterized conser 23.2 28 0.00062 36.8 0.1 24 29-57 535-558 (580)
138 PF14446 Prok-RING_1: Prokaryo 21.7 88 0.0019 23.4 2.4 34 8-42 5-38 (54)
139 PF06676 DUF1178: Protein of u 21.4 53 0.0011 29.0 1.4 23 30-57 9-40 (148)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.13 E-value=3.1e-11 Score=83.05 Aligned_cols=44 Identities=41% Similarity=0.955 Sum_probs=36.4
Q ss_pred ccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCc
Q 022899 9 TLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR 56 (290)
++|+||++.+.+ +..+..++|+|.||.+||..|++.+ .+||+||
T Consensus 1 d~C~IC~~~~~~--~~~~~~l~C~H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFED--GEKVVKLPCGHVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHT--TSCEEEETTSEEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCCcCCChhhcC--CCeEEEccCCCeeCHHHHHHHHHhC--CcCCccC
Confidence 479999999964 5577888999999999999999754 4699997
No 2
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.5e-09 Score=105.19 Aligned_cols=46 Identities=37% Similarity=0.845 Sum_probs=39.6
Q ss_pred ccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 9 TLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
++|+||||+|.+ +.++..|+|+|.||..||+.|+... ...||+||.
T Consensus 230 ~~CaIClEdY~~--GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDYEK--GDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKR 275 (348)
T ss_pred ceEEEeeccccc--CCeeeEecCCCchhhccchhhHhhc-CccCCCCCC
Confidence 489999999976 5577789999999999999999744 457999985
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.84 E-value=3e-09 Score=81.46 Aligned_cols=47 Identities=36% Similarity=0.822 Sum_probs=35.2
Q ss_pred Ccccccccccccccc--------CCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCc
Q 022899 8 ATLCSICWEEASETC--------GRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56 (290)
Q Consensus 8 ~~eCsICLE~~sds~--------~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR 56 (290)
++.|+||++.+.+.. +..+....|+|.||..||.+|++ ...+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~--~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK--QNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT--TSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh--cCCcCCCCC
Confidence 556999999994321 23455569999999999999996 344799998
No 4
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.71 E-value=1.2e-08 Score=70.83 Aligned_cols=40 Identities=30% Similarity=0.793 Sum_probs=30.6
Q ss_pred ccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCC--CCCCCC
Q 022899 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGI--MQCPNC 55 (290)
Q Consensus 11 CsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s--~~CPlC 55 (290)
|+||++.|++ ++.|+|||.||..||.+|++.... ..||.|
T Consensus 1 CpiC~~~~~~-----Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD-----PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS-----EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC-----ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999985 899999999999999999964433 479988
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.58 E-value=4.2e-08 Score=90.88 Aligned_cols=51 Identities=25% Similarity=0.483 Sum_probs=37.6
Q ss_pred CCccccccccccccccC--C-ceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 7 AATLCSICWEEASETCG--R-SIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~--~-~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
.+.+|+||++.+.+... . ....++|+|.||..||..|+. ...+||+||...
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~--~~~tCPlCR~~~ 226 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK--EKNTCPVCRTPF 226 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh--cCCCCCCCCCEe
Confidence 46789999998754221 1 123448999999999999996 345699999543
No 6
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=5.3e-08 Score=89.74 Aligned_cols=62 Identities=23% Similarity=0.434 Sum_probs=46.9
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCCCCCCCce---eccCcccccccCCCCC
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVT-GIMQCPNCRE---VENGVWMRFEINDNDE 73 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k-~s~~CPlCR~---i~~g~~l~a~~s~s~~ 73 (290)
+..+|.||||..++ ++...|||.||--||.+|++.. .++.||+||. +.+-+-+|..+.....
T Consensus 46 ~~FdCNICLd~akd-----PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~~~~~ 111 (230)
T KOG0823|consen 46 GFFDCNICLDLAKD-----PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGSKKPS 111 (230)
T ss_pred CceeeeeeccccCC-----CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCCCCCC
Confidence 45689999999876 5566699999999999999744 5567899993 3555667776664333
No 7
>PHA02926 zinc finger-like protein; Provisional
Probab=98.51 E-value=7e-08 Score=89.05 Aligned_cols=53 Identities=28% Similarity=0.612 Sum_probs=39.0
Q ss_pred cCCcccccccccccc---ccCCceEEe-CCCCcccHHHHHHHHhcC----CCCCCCCCcee
Q 022899 6 AAATLCSICWEEASE---TCGRSIVRL-QCSHLFHLDCIGSAFNVT----GIMQCPNCREV 58 (290)
Q Consensus 6 ~~~~eCsICLE~~sd---s~~~~~~~L-~CgH~FH~~CI~swl~~k----~s~~CPlCR~i 58 (290)
+.+.+|+||+|.+-+ ..++....| +|+|.||..||..|...+ ....||+||..
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~ 228 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTR 228 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcce
Confidence 356889999998632 123344555 999999999999999632 24569999954
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.50 E-value=1.4e-07 Score=85.25 Aligned_cols=47 Identities=28% Similarity=0.577 Sum_probs=37.9
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhc--------------CCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNV--------------TGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~--------------k~s~~CPlCR~i 58 (290)
+..+|+||++.+++ ++.+.|+|.||..||..|+.. ++...||+||..
T Consensus 17 ~~~~CpICld~~~d-----PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~ 77 (193)
T PLN03208 17 GDFDCNICLDQVRD-----PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77 (193)
T ss_pred CccCCccCCCcCCC-----cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCc
Confidence 45679999999874 566789999999999999852 234579999954
No 9
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.49 E-value=9.2e-08 Score=64.35 Aligned_cols=41 Identities=34% Similarity=0.895 Sum_probs=34.8
Q ss_pred ccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCC
Q 022899 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNC 55 (290)
Q Consensus 11 CsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlC 55 (290)
|+||++.+.+ ....++|+|.||..||..|++..+...||+|
T Consensus 1 C~iC~~~~~~----~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED----PVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS----EEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC----CCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999874 2336799999999999999976677789998
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.46 E-value=1.3e-07 Score=66.69 Aligned_cols=45 Identities=33% Similarity=0.805 Sum_probs=36.4
Q ss_pred CccccccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCCCCCCCceec
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHL-FHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~-FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
+..|.||++...+ +..++|+|. ||..|+.+|+. ....||+||+..
T Consensus 2 ~~~C~iC~~~~~~-----~~~~pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i 47 (50)
T PF13920_consen 2 DEECPICFENPRD-----VVLLPCGHLCFCEECAERLLK--RKKKCPICRQPI 47 (50)
T ss_dssp HSB-TTTSSSBSS-----EEEETTCEEEEEHHHHHHHHH--TTSBBTTTTBB-
T ss_pred cCCCccCCccCCc-----eEEeCCCChHHHHHHhHHhcc--cCCCCCcCChhh
Confidence 4689999998763 677899999 99999999997 555699999653
No 11
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.44 E-value=1.9e-07 Score=61.32 Aligned_cols=43 Identities=42% Similarity=0.874 Sum_probs=34.1
Q ss_pred cccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 10 LCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 10 eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
+|+||++.+.+ .....+|+|.||..|+..|+.. +...||.||.
T Consensus 1 ~C~iC~~~~~~----~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~ 43 (45)
T cd00162 1 ECPICLEEFRE----PVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRT 43 (45)
T ss_pred CCCcCchhhhC----ceEecCCCChhcHHHHHHHHHh-CcCCCCCCCC
Confidence 59999999842 3344469999999999999973 4567999985
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.42 E-value=1.7e-07 Score=63.16 Aligned_cols=39 Identities=33% Similarity=0.840 Sum_probs=31.3
Q ss_pred ccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCC
Q 022899 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNC 55 (290)
Q Consensus 11 CsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlC 55 (290)
|+||++.+.+ .++.++|||.||.+||..|++. ...||+|
T Consensus 1 C~iC~~~~~~----~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD----PVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS----EEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccC----cCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 8999999875 3467799999999999999974 4679998
No 13
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.3e-07 Score=92.74 Aligned_cols=52 Identities=29% Similarity=0.673 Sum_probs=41.5
Q ss_pred ccCCcccccccccccccc--------CCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 5 AAAATLCSICWEEASETC--------GRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 5 ~~~~~eCsICLE~~sds~--------~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
..++..|.||+|.+-..+ .+++++|+|||.+|.+|++.|++ +..+||+||..
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E--RqQTCPICr~p 343 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE--RQQTCPICRRP 343 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH--hccCCCcccCc
Confidence 356888999999853222 35789999999999999999997 44559999954
No 14
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.40 E-value=2.8e-07 Score=73.59 Aligned_cols=52 Identities=33% Similarity=0.685 Sum_probs=39.5
Q ss_pred CCcccccccccccccc--------CCceEEeCCCCcccHHHHHHHHhcC-CCCCCCCCcee
Q 022899 7 AATLCSICWEEASETC--------GRSIVRLQCSHLFHLDCIGSAFNVT-GIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~--------~~~~~~L~CgH~FH~~CI~swl~~k-~s~~CPlCR~i 58 (290)
.++.|.||...|.... ...++...|+|.||..||.+|++.. ...+||+||+.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~ 80 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQP 80 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCe
Confidence 3788999999986221 1244555899999999999999743 35689999965
No 15
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.7e-07 Score=88.92 Aligned_cols=46 Identities=33% Similarity=0.637 Sum_probs=38.3
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
...|++||+...+ +..++|||.||-.||..|...+.. ||+||...+
T Consensus 239 ~~kC~LCLe~~~~-----pSaTpCGHiFCWsCI~~w~~ek~e--CPlCR~~~~ 284 (293)
T KOG0317|consen 239 TRKCSLCLENRSN-----PSATPCGHIFCWSCILEWCSEKAE--CPLCREKFQ 284 (293)
T ss_pred CCceEEEecCCCC-----CCcCcCcchHHHHHHHHHHccccC--CCcccccCC
Confidence 4679999999764 777899999999999999975544 999996544
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.31 E-value=5.6e-07 Score=62.34 Aligned_cols=44 Identities=32% Similarity=0.704 Sum_probs=35.9
Q ss_pred cccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 10 LCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 10 eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
.|.||++.+. ....+..++|+|.||..|+..+. +....||+||+
T Consensus 1 ~C~~C~~~~~--~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYS--EERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCcccc--CCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 4999999993 24457778999999999999987 45667999984
No 17
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.27 E-value=8.1e-07 Score=56.32 Aligned_cols=39 Identities=41% Similarity=0.865 Sum_probs=32.5
Q ss_pred ccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCC
Q 022899 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNC 55 (290)
Q Consensus 11 CsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlC 55 (290)
|+||++... .+..++|+|.||..|+..|+. .+...||.|
T Consensus 1 C~iC~~~~~-----~~~~~~C~H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK-----DPVVLPCGHTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCC-----CcEEecCCChHHHHHHHHHHH-hCcCCCCCC
Confidence 789998854 477789999999999999996 455669987
No 18
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4e-07 Score=92.12 Aligned_cols=49 Identities=39% Similarity=0.811 Sum_probs=41.1
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
.+..|+||+|.+.......+.+++|+|.||..|+++|++.+ .+||+||.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~--qtCP~CR~ 338 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ--QTCPTCRT 338 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh--CcCCcchh
Confidence 46789999999875444557889999999999999999854 45999996
No 19
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=5.2e-07 Score=80.78 Aligned_cols=46 Identities=35% Similarity=0.837 Sum_probs=37.1
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
+...|+|||+.+++ +.++..+|||.||..||...+. ....||+|++
T Consensus 130 ~~~~CPiCl~~~se---k~~vsTkCGHvFC~~Cik~alk--~~~~CP~C~k 175 (187)
T KOG0320|consen 130 GTYKCPICLDSVSE---KVPVSTKCGHVFCSQCIKDALK--NTNKCPTCRK 175 (187)
T ss_pred cccCCCceecchhh---ccccccccchhHHHHHHHHHHH--hCCCCCCccc
Confidence 35679999999864 3446679999999999999986 4445999995
No 20
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.05 E-value=1.7e-06 Score=91.03 Aligned_cols=122 Identities=15% Similarity=0.079 Sum_probs=70.9
Q ss_pred cccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceeccCcccccccCC-----CC--CC------CC
Q 022899 10 LCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVENGVWMRFEIND-----ND--EI------TD 76 (290)
Q Consensus 10 eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~g~~l~a~~s~-----s~--~e------~d 76 (290)
.|++|+..+.+ +.......|+|.||..||..|.. -..+||+||.++..+........ -+ ++ .-
T Consensus 125 ~CP~Ci~s~~D--qL~~~~k~c~H~FC~~Ci~sWsR--~aqTCPiDR~EF~~v~V~eS~~~~~~vR~lP~EEs~~~~e~~ 200 (1134)
T KOG0825|consen 125 QCPNCLKSCND--QLEESEKHTAHYFCEECVGSWSR--CAQTCPVDRGEFGEVKVLESTGIEANVRCLPSEESENILEKG 200 (1134)
T ss_pred hhhHHHHHHHH--HhhccccccccccHHHHhhhhhh--hcccCchhhhhhheeeeeccccccceeEecchhhhhhhhhhc
Confidence 46666665543 12234458999999999999985 45569999966433211111110 00 00 00
Q ss_pred CCCCCCCCCCCCCccccCCCCcccccccccccCCcCCCCCcceee--------ccCCcCCCCC--CCCCCccceecccCC
Q 022899 77 EDEWPDDNLPDMIPQQCVGHNDWGPGFQRVTEFPLLGHRDCPIFT--------ANHHLYGPPM--ISEISTSRVIFHGHE 146 (290)
Q Consensus 77 ~ddw~D~n~~E~e~~~~pFg~~wCPf~~~~~~Lp~l~~rE~a~~~--------yn~h~~g~~~--~~e~~~~~~~~h~~~ 146 (290)
.|+-.|....+.+ ..--|-+|. +-+.|.++|+ ||++|-+++. ++-+ .
T Consensus 201 ~d~~~d~~~~~~~------E~~~C~IC~-------~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~----------e 257 (1134)
T KOG0825|consen 201 GDEKQDQISGLSQ------EEVKCDICT-------VHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVN----------E 257 (1134)
T ss_pred cccccccccCccc------ccccceeec-------cCChHHhheeecccccceeeccccCccccccccc----------c
Confidence 1111111111110 235599998 4666777666 9999998655 4555 8
Q ss_pred CCcCCCccCCCCCCCCC
Q 022899 147 PIHQAVFTSMCGNFIGA 163 (290)
Q Consensus 147 Wh~~~~f~~~~s~~~~~ 163 (290)
| ||..|+-+.-.
T Consensus 258 W-----YC~NC~dL~~~ 269 (1134)
T KOG0825|consen 258 W-----YCTNCSLLEIT 269 (1134)
T ss_pred e-----ecCcchhhhhh
Confidence 9 99999887543
No 21
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.05 E-value=3.3e-06 Score=59.32 Aligned_cols=41 Identities=34% Similarity=0.698 Sum_probs=23.8
Q ss_pred ccccccccccccCCceEEeCCCCcccHHHHHHHHhcC--CCCCCC
Q 022899 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVT--GIMQCP 53 (290)
Q Consensus 11 CsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k--~s~~CP 53 (290)
|+||.+ +. +....++.|+|||+||.+||++++..+ +...||
T Consensus 1 CpIc~e-~~-~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FS-TEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT------TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-cc-CCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 64 234567889999999999999999743 466787
No 22
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.01 E-value=5.7e-06 Score=59.69 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=36.6
Q ss_pred ccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 9 TLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
..|+||++.+++ ++.++|||.|+..||..|+.. ...||.|+..
T Consensus 2 ~~Cpi~~~~~~~-----Pv~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~ 44 (63)
T smart00504 2 FLCPISLEVMKD-----PVILPSGQTYERRAIEKWLLS--HGTDPVTGQP 44 (63)
T ss_pred cCCcCCCCcCCC-----CEECCCCCEEeHHHHHHHHHH--CCCCCCCcCC
Confidence 369999999885 677899999999999999974 4569999854
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.96 E-value=5.2e-06 Score=82.03 Aligned_cols=45 Identities=31% Similarity=0.572 Sum_probs=37.3
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
....|+||++.+.+ ++.++|+|.||..||..|+... ..||+||..
T Consensus 25 ~~l~C~IC~d~~~~-----PvitpCgH~FCs~CI~~~l~~~--~~CP~Cr~~ 69 (397)
T TIGR00599 25 TSLRCHICKDFFDV-----PVLTSCSHTFCSLCIRRCLSNQ--PKCPLCRAE 69 (397)
T ss_pred cccCCCcCchhhhC-----ccCCCCCCchhHHHHHHHHhCC--CCCCCCCCc
Confidence 35679999999874 5678999999999999999643 369999954
No 24
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=3e-06 Score=72.49 Aligned_cols=43 Identities=37% Similarity=0.816 Sum_probs=37.5
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCc
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR 56 (290)
+...|+||++.|.+ +..++|+|.||..||..++. ....||.||
T Consensus 12 ~~~~C~iC~~~~~~-----p~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFRE-----PVLLPCGHNFCRACLTRSWE--GPLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhc-----CccccccchHhHHHHHHhcC--CCcCCcccC
Confidence 45679999999985 46779999999999999986 557899999
No 25
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=5.1e-06 Score=83.94 Aligned_cols=46 Identities=39% Similarity=0.775 Sum_probs=36.4
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcC---CCCCCCCCcee
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVT---GIMQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k---~s~~CPlCR~i 58 (290)
+..|+|||+.... +..+.|||+||..||-.+|+.+ +-..||+||..
T Consensus 186 ~~~CPICL~~~~~-----p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~ 234 (513)
T KOG2164|consen 186 DMQCPICLEPPSV-----PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRST 234 (513)
T ss_pred CCcCCcccCCCCc-----ccccccCceeeHHHHHHHHhhhcccCCccCCchhhh
Confidence 6789999998652 4556799999999999999633 44569999943
No 26
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=6.7e-06 Score=79.96 Aligned_cols=52 Identities=35% Similarity=0.642 Sum_probs=38.8
Q ss_pred CCcccccccccccccc--CCceEEe-CCCCcccHHHHHHHHhcCC-----CCCCCCCcee
Q 022899 7 AATLCSICWEEASETC--GRSIVRL-QCSHLFHLDCIGSAFNVTG-----IMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~--~~~~~~L-~CgH~FH~~CI~swl~~k~-----s~~CPlCR~i 58 (290)
.+.+|.||++.+.+.. ..+..++ +|.|.||..||+.|-+.+. ++.||.||..
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~ 219 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVP 219 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCc
Confidence 4678999999875321 1224444 7999999999999985445 5779999954
No 27
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=5.1e-06 Score=78.85 Aligned_cols=53 Identities=26% Similarity=0.606 Sum_probs=41.8
Q ss_pred cCCcccccccccccccc-----CCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 6 AAATLCSICWEEASETC-----GRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~-----~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
.++..|+||-..+..+. -++.-+|.|+|.||..||+.|.-..+..+||.|++.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKek 279 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEK 279 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHH
Confidence 35778999998774322 135678899999999999999976677789999954
No 28
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.85 E-value=1.3e-05 Score=63.88 Aligned_cols=49 Identities=31% Similarity=0.575 Sum_probs=36.5
Q ss_pred Cccccccccccccc-----------cCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 8 ATLCSICWEEASET-----------CGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sds-----------~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
-+.|+||...+.+. ++..++.-.|.|.||..||.+||..++ +||++|+.
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~--~CPld~q~ 79 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKG--VCPLDRQT 79 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCC--CCCCCCce
Confidence 36788888776422 223455668999999999999998655 49999963
No 29
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.72 E-value=1e-05 Score=86.80 Aligned_cols=52 Identities=23% Similarity=0.527 Sum_probs=41.1
Q ss_pred cCCccccccccccccccCCceEEe--CCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 6 AAATLCSICWEEASETCGRSIVRL--QCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L--~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
.|-++|+||+..+...+...+.+. .|.|.||..|+..|+..+++..||+||.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRs 1520 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRS 1520 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccc
Confidence 367899999998753223333332 6999999999999999889999999994
No 30
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=2.2e-05 Score=77.91 Aligned_cols=50 Identities=38% Similarity=0.750 Sum_probs=45.4
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
..+|+|||+.+..++.+..+.+.|+|.|..+||+.|+.++..++||.|..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ 53 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSG 53 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCC
Confidence 57899999999888889999999999999999999997667789999973
No 31
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=2.2e-05 Score=74.04 Aligned_cols=48 Identities=31% Similarity=0.591 Sum_probs=37.3
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
++..|.||++.... +..++|||.||..||...+..++..-||+||+..
T Consensus 214 ~d~kC~lC~e~~~~-----ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 214 ADYKCFLCLEEPEV-----PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred cccceeeeecccCC-----cccccccchhhHHHHHHHHHhhccccCchhhhhc
Confidence 46789999998763 6778999999999999943334444599999643
No 32
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.62 E-value=4.9e-05 Score=73.13 Aligned_cols=50 Identities=20% Similarity=0.442 Sum_probs=35.7
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
+..|+||....-.+.........|||.||..|+...|. .+...||.|+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~-~~~~~CP~C~~~ 52 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV-RGSGSCPECDTP 52 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhc-CCCCCCCCCCCc
Confidence 46799999963222222233338999999999999875 455689999865
No 33
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.58 E-value=7.1e-05 Score=53.65 Aligned_cols=44 Identities=25% Similarity=0.665 Sum_probs=33.6
Q ss_pred cccccccccccccCCceEEeCCC-----CcccHHHHHHHHhcCCCCCCCCCc
Q 022899 10 LCSICWEEASETCGRSIVRLQCS-----HLFHLDCIGSAFNVTGIMQCPNCR 56 (290)
Q Consensus 10 eCsICLE~~sds~~~~~~~L~Cg-----H~FH~~CI~swl~~k~s~~CPlCR 56 (290)
.|-||++... +..+...+|. +.+|..|+.+|+..++...||+|+
T Consensus 1 ~CrIC~~~~~---~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD---EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCC---CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998222 2244566775 789999999999877788999995
No 34
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=1.2e-05 Score=78.34 Aligned_cols=47 Identities=32% Similarity=0.790 Sum_probs=38.5
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
.+..|.|||+.++. ......|.|.||.+||...+. .+...||.||+-
T Consensus 42 ~~v~c~icl~llk~----tmttkeClhrfc~~ci~~a~r-~gn~ecptcRk~ 88 (381)
T KOG0311|consen 42 IQVICPICLSLLKK----TMTTKECLHRFCFDCIWKALR-SGNNECPTCRKK 88 (381)
T ss_pred hhhccHHHHHHHHh----hcccHHHHHHHHHHHHHHHHH-hcCCCCchHHhh
Confidence 35679999999974 445568999999999999886 566789999954
No 35
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.42 E-value=5.6e-05 Score=73.90 Aligned_cols=43 Identities=33% Similarity=0.579 Sum_probs=36.6
Q ss_pred ccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 9 TLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
..|-||.+.|. .++..+|+|.||.-||+.+|. ...+||.|+..
T Consensus 24 LRC~IC~eyf~-----ip~itpCsHtfCSlCIR~~L~--~~p~CP~C~~~ 66 (442)
T KOG0287|consen 24 LRCGICFEYFN-----IPMITPCSHTFCSLCIRKFLS--YKPQCPTCCVT 66 (442)
T ss_pred HHHhHHHHHhc-----CceeccccchHHHHHHHHHhc--cCCCCCceecc
Confidence 45999999998 477889999999999999996 44569999843
No 36
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=3.9e-05 Score=60.78 Aligned_cols=52 Identities=33% Similarity=0.629 Sum_probs=37.2
Q ss_pred CCcccccccccccccc-------C-CceEEeCCCCcccHHHHHHHHhcCC-CCCCCCCcee
Q 022899 7 AATLCSICWEEASETC-------G-RSIVRLQCSHLFHLDCIGSAFNVTG-IMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~-------~-~~~~~L~CgH~FH~~CI~swl~~k~-s~~CPlCR~i 58 (290)
.+++|.||.-.|.... + -..+.-.|.|.||..||..|++.+. ..+||+||+.
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~ 79 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQT 79 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhe
Confidence 3568999998885321 1 1222237999999999999997443 3579999964
No 37
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.40 E-value=6e-05 Score=75.57 Aligned_cols=46 Identities=28% Similarity=0.751 Sum_probs=34.8
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
+..+|+||||.+..+... +....|.|.||..|+..|+. .+||+||-
T Consensus 174 ELPTCpVCLERMD~s~~g-i~t~~c~Hsfh~~cl~~w~~----~scpvcR~ 219 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTG-ILTILCNHSFHCSCLMKWWD----SSCPVCRY 219 (493)
T ss_pred cCCCcchhHhhcCccccc-eeeeecccccchHHHhhccc----CcChhhhh
Confidence 356799999998643222 34446999999999999975 34999994
No 38
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=7.7e-05 Score=62.05 Aligned_cols=48 Identities=23% Similarity=0.487 Sum_probs=35.4
Q ss_pred Cccccccccccccc------------cCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 8 ATLCSICWEEASET------------CGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 8 ~~eCsICLE~~sds------------~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
.+.|+||...+.+. .+..+..-.|.|.||..||.+|++ ....||+|.+
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlk--tr~vCPLdn~ 105 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLK--TRNVCPLDNK 105 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHh--hcCcCCCcCc
Confidence 45799998765421 123456668999999999999996 4455999964
No 39
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.34 E-value=0.0001 Score=70.96 Aligned_cols=43 Identities=33% Similarity=0.569 Sum_probs=36.5
Q ss_pred ccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 9 TLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
..|-||-+.|+ .+....|||.||.-||+..|+... .||+||..
T Consensus 26 lrC~IC~~~i~-----ip~~TtCgHtFCslCIR~hL~~qp--~CP~Cr~~ 68 (391)
T COG5432 26 LRCRICDCRIS-----IPCETTCGHTFCSLCIRRHLGTQP--FCPVCRED 68 (391)
T ss_pred HHhhhhhheee-----cceecccccchhHHHHHHHhcCCC--CCcccccc
Confidence 45999999998 477789999999999999997444 49999955
No 40
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.27 E-value=0.0003 Score=53.58 Aligned_cols=45 Identities=22% Similarity=0.195 Sum_probs=35.0
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
...|+|+.+.+.+ ++.+++||.|...||..|+.. +...||+|+..
T Consensus 4 ~f~CpIt~~lM~d-----PVi~~~G~tyer~~I~~~l~~-~~~~~P~t~~~ 48 (73)
T PF04564_consen 4 EFLCPITGELMRD-----PVILPSGHTYERSAIERWLEQ-NGGTDPFTRQP 48 (73)
T ss_dssp GGB-TTTSSB-SS-----EEEETTSEEEEHHHHHHHHCT-TSSB-TTT-SB
T ss_pred ccCCcCcCcHhhC-----ceeCCcCCEEcHHHHHHHHHc-CCCCCCCCCCc
Confidence 4679999999986 888999999999999999973 45679999854
No 41
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00025 Score=68.61 Aligned_cols=33 Identities=30% Similarity=0.695 Sum_probs=27.9
Q ss_pred ceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 25 SIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 25 ~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
+++.++|+|.||..|+..|+. .-+.+||+||+.
T Consensus 338 ~~~vlPC~H~FH~~Cv~kW~~-~y~~~CPvCrt~ 370 (374)
T COG5540 338 RLRVLPCDHRFHVGCVDKWLL-GYSNKCPVCRTA 370 (374)
T ss_pred eEEEeccCceechhHHHHHHh-hhcccCCccCCC
Confidence 577889999999999999996 345579999964
No 42
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.17 E-value=9.6e-05 Score=56.40 Aligned_cols=51 Identities=25% Similarity=0.504 Sum_probs=21.7
Q ss_pred CccccccccccccccCCceEE---eCCCCcccHHHHHHHHhc--CCC-------CCCCCCcee
Q 022899 8 ATLCSICWEEASETCGRSIVR---LQCSHLFHLDCIGSAFNV--TGI-------MQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~---L~CgH~FH~~CI~swl~~--k~s-------~~CPlCR~i 58 (290)
+.+|.||++.+.+.+...... ..|+..||..|+.+||.. +.. -.||.|++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 467999999865222221112 278999999999999952 111 149999854
No 43
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0002 Score=70.98 Aligned_cols=47 Identities=26% Similarity=0.691 Sum_probs=34.4
Q ss_pred CccccccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCC-CCCCCCc
Q 022899 8 ATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVTGI-MQCPNCR 56 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k~s-~~CPlCR 56 (290)
...|.||. ++.+. .+.+..+ .|||+||..|+.+|+....+ ..||+||
T Consensus 4 ~A~C~Ic~-d~~p~-~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICI-DGRPN-DHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEec-cCCcc-ccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 45799994 44332 2334444 59999999999999975555 5899998
No 44
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00025 Score=72.14 Aligned_cols=50 Identities=28% Similarity=0.587 Sum_probs=36.9
Q ss_pred Ccccccccccccc---ccC---------CceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 8 ATLCSICWEEASE---TCG---------RSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sd---s~~---------~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
..+|.||+.++.- ... +..+..+|.|.||..|+.+|.+ ..++.||.||..
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd-~ykl~CPvCR~p 632 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMD-TYKLICPVCRCP 632 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHh-hhcccCCccCCC
Confidence 4679999998631 111 1245569999999999999996 345689999964
No 45
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.93 E-value=0.00061 Score=50.42 Aligned_cols=48 Identities=19% Similarity=0.432 Sum_probs=31.6
Q ss_pred CcccCCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCC
Q 022899 3 DEAAAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPN 54 (290)
Q Consensus 3 D~~~~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPl 54 (290)
....-+..|+|.+..+++ .+....|+|.|-.+.|..+++.++...||.
T Consensus 6 ~~~~~~~~CPiT~~~~~~----PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 6 EGGTISLKCPITLQPFED----PVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SSB--SB-TTTSSB-SS----EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccEeccCCCCcCChhhC----CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 344456789999999986 344459999999999999996667788998
No 46
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00022 Score=53.45 Aligned_cols=50 Identities=26% Similarity=0.484 Sum_probs=37.0
Q ss_pred CCccccccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCCCCCCCceeccCc
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHL-FHLDCIGSAFNVTGIMQCPNCREVENGV 62 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~-FH~~CI~swl~~k~s~~CPlCR~i~~g~ 62 (290)
.+++|.||+|.-.+ -+...|||+ .|.+|-.+.+. ...-+||+||+..+++
T Consensus 6 ~~dECTICye~pvd-----sVlYtCGHMCmCy~Cg~rl~~-~~~g~CPiCRapi~dv 56 (62)
T KOG4172|consen 6 WSDECTICYEHPVD-----SVLYTCGHMCMCYACGLRLKK-ALHGCCPICRAPIKDV 56 (62)
T ss_pred cccceeeeccCcch-----HHHHHcchHHhHHHHHHHHHH-ccCCcCcchhhHHHHH
Confidence 45899999997543 233479996 89999888775 2455799999876554
No 47
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.00062 Score=65.57 Aligned_cols=46 Identities=28% Similarity=0.614 Sum_probs=37.1
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
...+|.||+.+.. .++.|.|+|.||..||..... .+...|++||..
T Consensus 6 ~~~eC~IC~nt~n-----~Pv~l~C~HkFCyiCiKGsy~-ndk~~CavCR~p 51 (324)
T KOG0824|consen 6 KKKECLICYNTGN-----CPVNLYCFHKFCYICIKGSYK-NDKKTCAVCRFP 51 (324)
T ss_pred cCCcceeeeccCC-----cCccccccchhhhhhhcchhh-cCCCCCceecCC
Confidence 4678999999865 467899999999999998764 345569999944
No 48
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.70 E-value=0.00039 Score=53.26 Aligned_cols=43 Identities=30% Similarity=0.740 Sum_probs=22.6
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
...|++|.+.+++ .+....|+|.||..||..-+. ..||+|++.
T Consensus 7 lLrCs~C~~~l~~----pv~l~~CeH~fCs~Ci~~~~~----~~CPvC~~P 49 (65)
T PF14835_consen 7 LLRCSICFDILKE----PVCLGGCEHIFCSSCIRDCIG----SECPVCHTP 49 (65)
T ss_dssp TTS-SSS-S--SS-----B---SSS--B-TTTGGGGTT----TB-SSS--B
T ss_pred hcCCcHHHHHhcC----CceeccCccHHHHHHhHHhcC----CCCCCcCCh
Confidence 3569999999875 344559999999999998664 249999853
No 49
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0016 Score=63.76 Aligned_cols=44 Identities=34% Similarity=0.685 Sum_probs=35.5
Q ss_pred CccccccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCCCCCCCcee
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHL-FHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~-FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
.++|.|||...++ ...|+|-|. .|..|....-- ....||+||..
T Consensus 290 gkeCVIClse~rd-----t~vLPCRHLCLCs~Ca~~Lr~--q~n~CPICRqp 334 (349)
T KOG4265|consen 290 GKECVICLSESRD-----TVVLPCRHLCLCSGCAKSLRY--QTNNCPICRQP 334 (349)
T ss_pred CCeeEEEecCCcc-----eEEecchhhehhHhHHHHHHH--hhcCCCccccc
Confidence 6789999998774 788999996 89999998653 33349999964
No 50
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.06 E-value=0.0069 Score=53.75 Aligned_cols=52 Identities=25% Similarity=0.471 Sum_probs=39.7
Q ss_pred CCCcccCCccccccccccccccCCceEEeCCCC-----cccHHHHHHHHhcCCCCCCCCCcee
Q 022899 1 MVDEAAAATLCSICWEEASETCGRSIVRLQCSH-----LFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 1 ~vD~~~~~~eCsICLE~~sds~~~~~~~L~CgH-----~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
|.|....+..|=||.+.-.+ ...+|.. ..|.+|+++|+..++...|++|++.
T Consensus 1 ~~~~s~~~~~CRIC~~~~~~------~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~ 57 (162)
T PHA02825 1 MEDVSLMDKCCWICKDEYDV------VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGP 57 (162)
T ss_pred CCCcCCCCCeeEecCCCCCC------ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCe
Confidence 56666778899999987421 1235544 5599999999998888999999855
No 51
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.0053 Score=58.72 Aligned_cols=46 Identities=26% Similarity=0.622 Sum_probs=37.9
Q ss_pred CCccccccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 7 AATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
.+.+|++|-+.-. .+... +|+|.+|.-||..-+....+++||.|-.
T Consensus 238 ~~~~C~~Cg~~Pt-----iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~ 284 (298)
T KOG2879|consen 238 SDTECPVCGEPPT-----IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGE 284 (298)
T ss_pred CCceeeccCCCCC-----CCeeeccccceeehhhhhhhhcchhhcccCccCC
Confidence 4678999998754 35565 6999999999999887667789999964
No 52
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.93 E-value=0.0027 Score=63.41 Aligned_cols=51 Identities=33% Similarity=0.815 Sum_probs=39.9
Q ss_pred ccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 9 TLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
.-|..|-+.+.. ..+..-.|+|.|+||..|+...+...+..+||.||++..
T Consensus 366 L~Cg~CGe~~Gl-k~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 366 LYCGLCGESIGL-KNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred hhhhhhhhhhcC-CcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 458899887632 133566789999999999999997777888999996533
No 53
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.0023 Score=67.46 Aligned_cols=45 Identities=27% Similarity=0.719 Sum_probs=35.8
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
-..|++|-...++ .+...|+|.||..|++.-+. .+...||.|-+-
T Consensus 643 ~LkCs~Cn~R~Kd-----~vI~kC~H~FC~~Cvq~r~e-tRqRKCP~Cn~a 687 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD-----AVITKCGHVFCEECVQTRYE-TRQRKCPKCNAA 687 (698)
T ss_pred ceeCCCccCchhh-----HHHHhcchHHHHHHHHHHHH-HhcCCCCCCCCC
Confidence 4569999988875 55668999999999999886 344569999743
No 54
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.0055 Score=60.98 Aligned_cols=44 Identities=27% Similarity=0.713 Sum_probs=36.6
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
.+.+|.||+..+- .++.++|||.||..||.+.+. ....||+||.
T Consensus 83 sef~c~vc~~~l~-----~pv~tpcghs~c~~Cl~r~ld--~~~~cp~Cr~ 126 (398)
T KOG4159|consen 83 SEFECCVCSRALY-----PPVVTPCGHSFCLECLDRSLD--QETECPLCRD 126 (398)
T ss_pred chhhhhhhHhhcC-----CCccccccccccHHHHHHHhc--cCCCCccccc
Confidence 3567999999876 377779999999999999775 5667999994
No 55
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.69 E-value=0.005 Score=61.76 Aligned_cols=48 Identities=29% Similarity=0.617 Sum_probs=37.9
Q ss_pred ccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceeccC
Q 022899 9 TLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVENG 61 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~g 61 (290)
+.|-||-|.=++ +.+-+|||..|..|+..|-.......||.||-..+|
T Consensus 370 eLCKICaendKd-----vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAENDKD-----VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccCCC-----cccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 469999987543 445599999999999999865667789999965454
No 56
>PHA03096 p28-like protein; Provisional
Probab=95.35 E-value=0.0089 Score=57.07 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=34.1
Q ss_pred ccccccccccccc--cCCceEEe-CCCCcccHHHHHHHHhcC-CCCCCCCCc
Q 022899 9 TLCSICWEEASET--CGRSIVRL-QCSHLFHLDCIGSAFNVT-GIMQCPNCR 56 (290)
Q Consensus 9 ~eCsICLE~~sds--~~~~~~~L-~CgH~FH~~CI~swl~~k-~s~~CPlCR 56 (290)
..|.||++.+... .++....| .|.|.||..||..|-..+ ....||.||
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 6799999986421 23455666 899999999999998522 334566665
No 57
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.70 E-value=0.014 Score=60.34 Aligned_cols=50 Identities=26% Similarity=0.615 Sum_probs=38.9
Q ss_pred CCcccCCccccccccccccccCCceEEeCCCCcccHHHHHHHHh---cCCCCCCCCCc
Q 022899 2 VDEAAAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFN---VTGIMQCPNCR 56 (290)
Q Consensus 2 vD~~~~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~---~k~s~~CPlCR 56 (290)
.++-.+..+|.+|-+.-++ .....|.|.||..||..+.. .....+||.|-
T Consensus 530 ~~enk~~~~C~lc~d~aed-----~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~ 582 (791)
T KOG1002|consen 530 PDENKGEVECGLCHDPAED-----YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCH 582 (791)
T ss_pred CccccCceeecccCChhhh-----hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccc
Confidence 3445677889999998764 66678999999999988764 23347899996
No 58
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.53 E-value=0.018 Score=40.95 Aligned_cols=42 Identities=26% Similarity=0.603 Sum_probs=27.7
Q ss_pred ccccccccccccCCceEEeCC--CC---cccHHHHHHHHhcCCCCCCCCC
Q 022899 11 CSICWEEASETCGRSIVRLQC--SH---LFHLDCIGSAFNVTGIMQCPNC 55 (290)
Q Consensus 11 CsICLE~~sds~~~~~~~L~C--gH---~FH~~CI~swl~~k~s~~CPlC 55 (290)
|-||++.-.++ .....+| .- ..|.+|+.+|+..++..+|++|
T Consensus 1 CrIC~~~~~~~---~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEED---EPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSS---S-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCC---CceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 67999886532 1334455 44 7899999999987777889988
No 59
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.08 E-value=0.014 Score=56.79 Aligned_cols=47 Identities=23% Similarity=0.483 Sum_probs=37.6
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
..+|.+|-..|.+ ...+..|-|.||..||...+.. ...||.|..+..
T Consensus 15 ~itC~LC~GYliD----ATTI~eCLHTFCkSCivk~l~~--~~~CP~C~i~ih 61 (331)
T KOG2660|consen 15 HITCRLCGGYLID----ATTITECLHTFCKSCIVKYLEE--SKYCPTCDIVIH 61 (331)
T ss_pred ceehhhccceeec----chhHHHHHHHHHHHHHHHHHHH--hccCCccceecc
Confidence 4679999998875 3444589999999999999974 667999985533
No 60
>PHA02862 5L protein; Provisional
Probab=94.06 E-value=0.041 Score=48.50 Aligned_cols=49 Identities=22% Similarity=0.491 Sum_probs=36.3
Q ss_pred CccccccccccccccCCceEEeCCC-----CcccHHHHHHHHhcCCCCCCCCCceeccCc
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCS-----HLFHLDCIGSAFNVTGIMQCPNCREVENGV 62 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~Cg-----H~FH~~CI~swl~~k~s~~CPlCR~i~~g~ 62 (290)
++.|=||++.-.+ . .-+|. -.-|.+|+++|++.++...|++|+....-.
T Consensus 2 ~diCWIC~~~~~e----~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCDE----R--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCCC----C--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 4679999997432 1 23453 378999999999988889999999654333
No 61
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.04 Score=51.27 Aligned_cols=49 Identities=29% Similarity=0.597 Sum_probs=39.1
Q ss_pred ccccccccccccc-cCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 9 TLCSICWEEASET-CGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 9 ~eCsICLE~~sds-~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
..|-||-++|+.. +.+.+..|.|||.+|..|+...+. .....||.||..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~-~~~i~cpfcR~~ 53 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLG-NSRILCPFCRET 53 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhc-CceeeccCCCCc
Confidence 4799999999643 356778889999999999998775 345568999954
No 62
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=93.60 E-value=0.031 Score=55.19 Aligned_cols=45 Identities=29% Similarity=0.688 Sum_probs=36.7
Q ss_pred CCccccccccccccccCCceEE-eCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVR-LQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~-L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
.+..|+||...+.+ +.. ..|+|.||..|+..|+.. ...||.|+..
T Consensus 20 ~~l~C~~C~~vl~~-----p~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~ 65 (391)
T KOG0297|consen 20 ENLLCPICMSVLRD-----PVQTTTCGHRFCAGCLLESLSN--HQKCPVCRQE 65 (391)
T ss_pred ccccCccccccccC-----CCCCCCCCCcccccccchhhcc--CcCCcccccc
Confidence 35679999999985 445 589999999999999964 5569999744
No 63
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.18 E-value=0.081 Score=38.41 Aligned_cols=46 Identities=26% Similarity=0.573 Sum_probs=22.3
Q ss_pred ccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 11 CsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
|++|.+++.. .+.....-+|+..+|..|....++ .....||-||+.
T Consensus 1 cp~C~e~~d~-~d~~~~PC~Cgf~IC~~C~~~i~~-~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDE-TDKDFYPCECGFQICRFCYHDILE-NEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--C-CCTT--SSTTS----HHHHHHHTT-SS-SB-TTT--B
T ss_pred CCCccccccc-CCCccccCcCCCcHHHHHHHHHHh-ccCCCCCCCCCC
Confidence 7899999832 233444448899999999888764 234459999964
No 64
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=92.97 E-value=0.034 Score=54.11 Aligned_cols=36 Identities=19% Similarity=0.539 Sum_probs=29.0
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHh
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFN 45 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~ 45 (290)
...|.|||--|.+ +....+..|.|.||..|+.++++
T Consensus 115 ~gqCvICLygfa~--~~~ft~T~C~Hy~H~~ClaRyl~ 150 (368)
T KOG4445|consen 115 NGQCVICLYGFAS--SPAFTVTACDHYMHFACLARYLT 150 (368)
T ss_pred CCceEEEEEeecC--CCceeeehhHHHHHHHHHHHHHH
Confidence 4569999998864 33567789999999999988764
No 65
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=92.91 E-value=0.041 Score=59.33 Aligned_cols=50 Identities=32% Similarity=0.637 Sum_probs=36.2
Q ss_pred cCCccccccccccccccCCceEEe--CCCCcccHHHHHHHHhcC-----CCCCCCCCcee
Q 022899 6 AAATLCSICWEEASETCGRSIVRL--QCSHLFHLDCIGSAFNVT-----GIMQCPNCREV 58 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L--~CgH~FH~~CI~swl~~k-----~s~~CPlCR~i 58 (290)
.+..+|.||++.+.. ...++. .|-|+||+.||+.|.... ..-.||.|+.+
T Consensus 189 ~~~yeCmIC~e~I~~---t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIKR---TAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeeccc---cCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 456789999999863 123332 689999999999998531 12249999844
No 66
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=92.76 E-value=0.062 Score=61.16 Aligned_cols=49 Identities=37% Similarity=0.931 Sum_probs=35.5
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhc--------CCCCCCCCCce
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNV--------TGIMQCPNCRE 57 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~--------k~s~~CPlCR~ 57 (290)
+++.|.||+..-.. .-..++|.|+|+||..|.+..++. -+-++||+|+.
T Consensus 3485 ~DDmCmICFTE~L~--AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n 3541 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALS--AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKN 3541 (3738)
T ss_pred cCceEEEEehhhhC--CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccc
Confidence 46789999975321 224567899999999999877641 13467999983
No 67
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.43 E-value=0.1 Score=50.98 Aligned_cols=43 Identities=30% Similarity=0.729 Sum_probs=34.5
Q ss_pred ccccccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 9 TLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
..|+.|...+.. +++. -|+|.||.+||...|. ...+.||+|..
T Consensus 275 LkCplc~~Llrn-----p~kT~cC~~~fc~eci~~al~-dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRN-----PMKTPCCGHTFCDECIGTALL-DSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhC-----cccCccccchHHHHHHhhhhh-hccccCCCccc
Confidence 569999988764 4555 6899999999999885 45678999963
No 68
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.08 E-value=0.18 Score=50.26 Aligned_cols=46 Identities=26% Similarity=0.570 Sum_probs=35.2
Q ss_pred cCCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
.++..|+||+..-. ..+..+|+|.-|..||.+.+- +.+.|=.|++.
T Consensus 420 sEd~lCpICyA~pi-----~Avf~PC~H~SC~~CI~qHlm--N~k~CFfCktT 465 (489)
T KOG4692|consen 420 SEDNLCPICYAGPI-----NAVFAPCSHRSCYGCITQHLM--NCKRCFFCKTT 465 (489)
T ss_pred cccccCcceecccc-----hhhccCCCCchHHHHHHHHHh--cCCeeeEecce
Confidence 45778999997522 234568999999999999884 44569999854
No 69
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=90.73 E-value=0.13 Score=36.05 Aligned_cols=43 Identities=28% Similarity=0.641 Sum_probs=21.9
Q ss_pred ccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCC
Q 022899 11 CSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNC 55 (290)
Q Consensus 11 CsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlC 55 (290)
|.+|.+.+..+ ..=....|+-.+|..|+..++.......||.|
T Consensus 1 C~~C~~iv~~G--~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQG--QRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSS--EE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeee--ccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67888876531 11111248889999999999975555579988
No 70
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=90.72 E-value=0.11 Score=40.64 Aligned_cols=32 Identities=31% Similarity=0.732 Sum_probs=25.8
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHH
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIG 41 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~ 41 (290)
.+..|++|-..+.. ......+|+|.||..|+.
T Consensus 77 ~~~~C~vC~k~l~~---~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN---SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC---ceEEEeCCCeEEeccccc
Confidence 35679999999863 356667999999999975
No 71
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.54 E-value=0.16 Score=51.06 Aligned_cols=47 Identities=30% Similarity=0.667 Sum_probs=34.6
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHh---cC---CCCCCCCCc
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFN---VT---GIMQCPNCR 56 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~---~k---~s~~CPlCR 56 (290)
...|.||++... |......++|+|.||..|+..++. +. +.+.||-++
T Consensus 184 lf~C~ICf~e~~--G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 184 LFDCCICFEEQM--GQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred cccceeeehhhc--CcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 457999999864 234567789999999999999985 22 234577654
No 72
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=90.44 E-value=0.11 Score=44.91 Aligned_cols=35 Identities=23% Similarity=0.495 Sum_probs=26.0
Q ss_pred CccccccccccccccCCceEEeCC------CCcccHHHHHHHH
Q 022899 8 ATLCSICWEEASETCGRSIVRLQC------SHLFHLDCIGSAF 44 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~C------gH~FH~~CI~swl 44 (290)
..+|.||++.+.+++| ++.+.| .++||.+|+.+|-
T Consensus 26 ~~EC~IC~~~I~~~~G--vV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDG--VVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCC--EEEEecCCeehHHHHHHHHHHHHHH
Confidence 5789999999975222 333344 6799999999994
No 73
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=90.09 E-value=0.12 Score=48.00 Aligned_cols=46 Identities=28% Similarity=0.533 Sum_probs=35.9
Q ss_pred ccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceeccC
Q 022899 9 TLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVENG 61 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~g 61 (290)
..|.||-.++. .++...|||.||..|...-.+ ....|-+|-+...|
T Consensus 197 F~C~iCKkdy~-----spvvt~CGH~FC~~Cai~~y~--kg~~C~~Cgk~t~G 242 (259)
T COG5152 197 FLCGICKKDYE-----SPVVTECGHSFCSLCAIRKYQ--KGDECGVCGKATYG 242 (259)
T ss_pred eeehhchhhcc-----chhhhhcchhHHHHHHHHHhc--cCCcceecchhhcc
Confidence 47999999997 477788999999999887665 33469999754443
No 74
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.87 E-value=0.25 Score=49.22 Aligned_cols=50 Identities=24% Similarity=0.432 Sum_probs=36.3
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceeccCc
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVENGV 62 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~g~ 62 (290)
...|-||-+.++- ...++|+|..|--|.-+.-..-..+.||+||+.-..+
T Consensus 61 n~~C~ICA~~~TY-----s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 61 NMNCQICAGSTTY-----SARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred cceeEEecCCceE-----EEeccCCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence 4569999998762 5567999999999977654323445699999654433
No 75
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=89.68 E-value=0.25 Score=48.84 Aligned_cols=28 Identities=36% Similarity=0.997 Sum_probs=21.5
Q ss_pred CCCcccHHHHHHHHhc-----------CCCCCCCCCcee
Q 022899 31 CSHLFHLDCIGSAFNV-----------TGIMQCPNCREV 58 (290)
Q Consensus 31 CgH~FH~~CI~swl~~-----------k~s~~CPlCR~i 58 (290)
|.-++|.+|+.+|+.. +++-.||+||+.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~ 349 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAK 349 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccc
Confidence 4557899999999952 235579999964
No 76
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.42 E-value=0.19 Score=53.20 Aligned_cols=44 Identities=30% Similarity=0.759 Sum_probs=36.2
Q ss_pred ccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 9 TLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
..|.||++ .. ......|+|.||.+|+...++......||+||..
T Consensus 455 ~~c~ic~~-~~-----~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~ 498 (674)
T KOG1001|consen 455 HWCHICCD-LD-----SFFITRCGHDFCVECLKKSIQQSENAPCPLCRNV 498 (674)
T ss_pred cccccccc-cc-----cceeecccchHHHHHHHhccccccCCCCcHHHHH
Confidence 68999999 33 4667789999999999999875666689999944
No 77
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=89.11 E-value=0.21 Score=48.95 Aligned_cols=27 Identities=37% Similarity=0.834 Sum_probs=21.6
Q ss_pred eEEe-CCCCcccHHHHHHHHhcCCCCCCCCCc
Q 022899 26 IVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCR 56 (290)
Q Consensus 26 ~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR 56 (290)
..++ +|+|+||++|.+. ...+.||.|-
T Consensus 103 YGRmIPCkHvFCl~CAr~----~~dK~Cp~C~ 130 (389)
T KOG2932|consen 103 YGRMIPCKHVFCLECARS----DSDKICPLCD 130 (389)
T ss_pred eecccccchhhhhhhhhc----CccccCcCcc
Confidence 5555 9999999999875 3456799996
No 78
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.73 E-value=0.3 Score=52.93 Aligned_cols=42 Identities=26% Similarity=0.649 Sum_probs=33.1
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
...|++|-..+.- ..+-..|+|.||.+|+. .+...||.|+..
T Consensus 840 ~skCs~C~~~Ldl----P~VhF~CgHsyHqhC~e-----~~~~~CP~C~~e 881 (933)
T KOG2114|consen 840 VSKCSACEGTLDL----PFVHFLCGHSYHQHCLE-----DKEDKCPKCLPE 881 (933)
T ss_pred eeeecccCCcccc----ceeeeecccHHHHHhhc-----cCcccCCccchh
Confidence 4579999988863 34556899999999988 355679999863
No 79
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.60 E-value=0.35 Score=46.90 Aligned_cols=46 Identities=24% Similarity=0.448 Sum_probs=35.8
Q ss_pred ccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceeccC
Q 022899 9 TLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVENG 61 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~g 61 (290)
..|-||...+.. ++...|+|.||..|...-++ ....|.+|-+...+
T Consensus 242 f~c~icr~~f~~-----pVvt~c~h~fc~~ca~~~~q--k~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYR-----PVVTKCGHYFCEVCALKPYQ--KGEKCYVCSQQTHG 287 (313)
T ss_pred cccccccccccc-----chhhcCCceeehhhhccccc--cCCcceeccccccc
Confidence 459999999874 77889999999999887765 33459999754333
No 80
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.43 E-value=0.72 Score=44.12 Aligned_cols=47 Identities=13% Similarity=0.283 Sum_probs=36.6
Q ss_pred CCccccccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 7 AATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
....|+||.+.+++ ....+.| +|||+|+.+|...+.. ..+.||+|-.
T Consensus 220 ~ryiCpvtrd~LtN--t~~ca~Lr~sg~Vv~~ecvEklir--~D~v~pv~d~ 267 (303)
T KOG3039|consen 220 KRYICPVTRDTLTN--TTPCAVLRPSGHVVTKECVEKLIR--KDMVDPVTDK 267 (303)
T ss_pred cceecccchhhhcC--ccceEEeccCCcEeeHHHHHHhcc--ccccccCCCC
Confidence 34579999999875 2334455 8999999999999875 6677999953
No 81
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.11 E-value=0.37 Score=45.16 Aligned_cols=45 Identities=22% Similarity=0.561 Sum_probs=30.8
Q ss_pred ccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 9 TLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
..|..|.-.-. +.....+.|.|+||..|...-.. .+||+||+...
T Consensus 4 VhCn~C~~~~~---~~~f~LTaC~HvfC~~C~k~~~~----~~C~lCkk~ir 48 (233)
T KOG4739|consen 4 VHCNKCFRFPS---QDPFFLTACRHVFCEPCLKASSP----DVCPLCKKSIR 48 (233)
T ss_pred EEeccccccCC---CCceeeeechhhhhhhhcccCCc----cccccccceee
Confidence 35777765432 33566679999999999875332 27999996533
No 82
>PF04641 Rtf2: Rtf2 RING-finger
Probab=84.89 E-value=1 Score=42.02 Aligned_cols=47 Identities=19% Similarity=0.407 Sum_probs=34.7
Q ss_pred CCccccccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
+...|+|....|. +....+.+ +|||+|...+|...- ....||+|-..
T Consensus 112 ~~~~CPvt~~~~~--~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~ 159 (260)
T PF04641_consen 112 GRFICPVTGKEFN--GKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKP 159 (260)
T ss_pred ceeECCCCCcccC--CceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCc
Confidence 4557999998884 23445555 999999999999862 34569999743
No 83
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.75 E-value=0.36 Score=51.21 Aligned_cols=43 Identities=30% Similarity=0.585 Sum_probs=32.3
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCc
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR 56 (290)
...|.||+..+.. ....++.+.|||+.|..|.+...+ .+|| |+
T Consensus 11 ~l~c~ic~n~f~~-~~~~Pvsl~cghtic~~c~~~lyn----~scp-~~ 53 (861)
T KOG3161|consen 11 LLLCDICLNLFVV-QRLEPVSLQCGHTICGHCVQLLYN----ASCP-TK 53 (861)
T ss_pred HhhchHHHHHHHH-HhcCcccccccchHHHHHHHhHhh----ccCC-CC
Confidence 3469999987742 234577889999999999998765 3488 64
No 84
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=84.33 E-value=0.85 Score=44.98 Aligned_cols=43 Identities=23% Similarity=0.448 Sum_probs=32.5
Q ss_pred cCCccccccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCC
Q 022899 6 AAATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNC 55 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlC 55 (290)
.+...|+||+....+ +..+ --|-+||..||-+.+...+. ||+-
T Consensus 298 ~~~~~CpvClk~r~N-----ptvl~vSGyVfCY~Ci~~Yv~~~~~--CPVT 341 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQN-----PTVLEVSGYVFCYPCIFSYVVNYGH--CPVT 341 (357)
T ss_pred CccccChhHHhccCC-----CceEEecceEEeHHHHHHHHHhcCC--CCcc
Confidence 356779999988653 3333 46999999999999975555 9975
No 85
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.11 E-value=0.91 Score=45.52 Aligned_cols=46 Identities=24% Similarity=0.587 Sum_probs=35.8
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCC--CCCCCCc
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGI--MQCPNCR 56 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s--~~CPlCR 56 (290)
...|+|=.+.-++ +-.++.|.|||+...+.|.+..+ .++ +.||.|-
T Consensus 334 vF~CPVlKeqtsd--eNPPm~L~CGHVISkdAlnrLS~-ng~~sfKCPYCP 381 (394)
T KOG2817|consen 334 VFICPVLKEQTSD--ENPPMMLICGHVISKDALNRLSK-NGSQSFKCPYCP 381 (394)
T ss_pred eeecccchhhccC--CCCCeeeeccceecHHHHHHHhh-CCCeeeeCCCCC
Confidence 3468887776433 44789999999999999999875 444 7899995
No 86
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=84.00 E-value=0.97 Score=43.80 Aligned_cols=48 Identities=23% Similarity=0.566 Sum_probs=34.3
Q ss_pred cccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 10 LCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 10 eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
.|++|....--+.....+.-+|+|..|.+|..+.+. .+.-+||.|-.+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~-~g~~~CpeC~~i 49 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFS-LGPAQCPECMVI 49 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHh-cCCCCCCcccch
Confidence 589998863212222333349999999999999885 566789999765
No 87
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=82.79 E-value=0.9 Score=41.74 Aligned_cols=50 Identities=30% Similarity=0.740 Sum_probs=36.3
Q ss_pred CccccccccccccccCCceEEeCCCC-----cccHHHHHHHHhcCCCCCCCCCcee
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSH-----LFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH-----~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
...|-||.+........ ....+|.. ..|..|+..|+..++...|-+|...
T Consensus 78 ~~~cRIc~~~~~~~~~~-~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~ 132 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGL-LLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSF 132 (323)
T ss_pred CCcEEEEeccccccccc-ccccCccccCcHHHHHHHHHHhhhccccCeeeeccccc
Confidence 46799999976431111 34456633 4699999999988899999999854
No 88
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=82.19 E-value=0.75 Score=44.43 Aligned_cols=40 Identities=30% Similarity=0.630 Sum_probs=30.7
Q ss_pred CccccccccccccccCCceEEeCC--CCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 8 ATLCSICWEEASETCGRSIVRLQC--SHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~C--gH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
..+|+||.+.++ +-+++| ||..|..|-.+.. ..||.||..
T Consensus 48 lleCPvC~~~l~------~Pi~QC~nGHlaCssC~~~~~-----~~CP~Cr~~ 89 (299)
T KOG3002|consen 48 LLDCPVCFNPLS------PPIFQCDNGHLACSSCRTKVS-----NKCPTCRLP 89 (299)
T ss_pred hccCchhhccCc------ccceecCCCcEehhhhhhhhc-----ccCCccccc
Confidence 457999999987 345678 8999999976432 349999944
No 89
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.47 E-value=0.86 Score=45.16 Aligned_cols=46 Identities=30% Similarity=0.742 Sum_probs=30.6
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCCCCC
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVT----GIMQCP 53 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k----~s~~CP 53 (290)
...+|.||....... ........|+|.||.+|..+.+..+ ....||
T Consensus 145 ~~~~C~iC~~e~~~~-~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~ 194 (384)
T KOG1812|consen 145 PKEECGICFVEDPEA-EDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCP 194 (384)
T ss_pred ccccCccCccccccH-hhhHHHhcccchhhhHHhHHHhhhhhccCCCccCC
Confidence 467899999543322 1222356899999999999888622 344565
No 90
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=81.29 E-value=0.95 Score=43.45 Aligned_cols=47 Identities=28% Similarity=0.544 Sum_probs=36.4
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
...|+||.+.+.. +...+..++|+|.-|..|...... ++ ..||+|.+
T Consensus 158 ~~ncPic~e~l~~-s~~~~~~~~CgH~~h~~cf~e~~~-~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFL-SFEDAGVLKCGHYMHSRCFEEMIC-EG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhcc-ccccCCccCcccchHHHHHHHHhc-cC-CCCCcccc
Confidence 4459999997643 234567789999999999998764 34 88999987
No 91
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=81.25 E-value=2.8 Score=33.59 Aligned_cols=52 Identities=21% Similarity=0.470 Sum_probs=22.3
Q ss_pred CCcccccccccccccc-CCce-EEeCCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 7 AATLCSICWEEASETC-GRSI-VRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 7 ~~~eCsICLE~~sds~-~~~~-~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
....|.||-+.+.... +... .-..|+--.|..|..-=. +.++..||.|++..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYEr-keg~q~CpqCkt~y 61 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYER-KEGNQVCPQCKTRY 61 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHH-HTS-SB-TTT--B-
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHh-hcCcccccccCCCc
Confidence 4578999999873222 2222 223889999999987433 47888999999653
No 92
>PLN02189 cellulose synthase
Probab=80.82 E-value=1.8 Score=48.19 Aligned_cols=52 Identities=25% Similarity=0.509 Sum_probs=36.7
Q ss_pred Cccccccccccccc-cCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 8 ATLCSICWEEASET-CGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 8 ~~eCsICLE~~sds-~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
...|.||-+.+... .+...+.. .|+--.|..|-. .=.+.++..||.|++..+
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cye-yer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE-YERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhcCCccCcccCCchh
Confidence 45899999997422 23344333 688889999984 444578889999997644
No 93
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.64 E-value=1.7 Score=41.27 Aligned_cols=48 Identities=29% Similarity=0.636 Sum_probs=35.7
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcC------CCCCCCCCce
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVT------GIMQCPNCRE 57 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k------~s~~CPlCR~ 57 (290)
....|..|--.+.. ...++|.|-|.||-+|+..|...- ..-+||.|..
T Consensus 49 Y~pNC~LC~t~La~---gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ 102 (299)
T KOG3970|consen 49 YNPNCRLCNTPLAS---GDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQ 102 (299)
T ss_pred CCCCCceeCCcccc---CcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCC
Confidence 35568899888753 245678999999999999997421 2347999973
No 94
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=79.62 E-value=2 Score=38.39 Aligned_cols=33 Identities=27% Similarity=0.576 Sum_probs=20.8
Q ss_pred CccccccccccccccCCceEEeCC------------CC-cccHHHHHHHHh
Q 022899 8 ATLCSICWEEASETCGRSIVRLQC------------SH-LFHLDCIGSAFN 45 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~C------------gH-~FH~~CI~swl~ 45 (290)
+..|+||||.=-+ .+.|.| +- .-|..|++++-+
T Consensus 2 d~~CpICme~PHN-----AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHN-----AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCc-----eEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 5689999996432 233334 22 457789888743
No 95
>PLN02436 cellulose synthase A
Probab=78.20 E-value=2.3 Score=47.53 Aligned_cols=52 Identities=23% Similarity=0.477 Sum_probs=36.7
Q ss_pred Ccccccccccccc-ccCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 8 ATLCSICWEEASE-TCGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 8 ~~eCsICLE~~sd-s~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
...|.||-+++.. ..+...+.. .|+--.|..|.. .=.+.++..||.|++..+
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye-yer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE-YERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhcCCccCcccCCchh
Confidence 4589999999732 223344443 688889999985 444578889999997644
No 96
>PLN02400 cellulose synthase
Probab=76.63 E-value=2 Score=47.97 Aligned_cols=52 Identities=23% Similarity=0.520 Sum_probs=36.3
Q ss_pred Cccccccccccccc-cCCceEE-eCCCCcccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 8 ATLCSICWEEASET-CGRSIVR-LQCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 8 ~~eCsICLE~~sds-~~~~~~~-L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
...|.||-|++... .+...+. -.|+=-.|..|-. .=.+.++..||.||+..+
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE-YERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE-YERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhh-eecccCCccCcccCCccc
Confidence 45899999987322 2333333 3788889999974 334568889999997654
No 97
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=75.86 E-value=0.5 Score=50.27 Aligned_cols=46 Identities=33% Similarity=0.705 Sum_probs=37.7
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCCCCCCCce
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVT-GIMQCPNCRE 57 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k-~s~~CPlCR~ 57 (290)
...+|.||+..+.+ +..+.|.|.|+..|+...|..+ +..+||+|+.
T Consensus 20 k~lEc~ic~~~~~~-----p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~ 66 (684)
T KOG4362|consen 20 KILECPICLEHVKE-----PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKS 66 (684)
T ss_pred hhccCCceeEEeec-----cchhhhhHHHHhhhhhceeeccCccccchhhhh
Confidence 45689999999874 4677999999999999888533 3678999983
No 98
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=75.76 E-value=1.9 Score=43.02 Aligned_cols=49 Identities=20% Similarity=0.524 Sum_probs=32.4
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHh-cCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFN-VTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~-~k~s~~CPlCR~i 58 (290)
+++-|+.|+|.+.. .++.....+||-..|.-|...--+ ..+. ||-||..
T Consensus 13 eed~cplcie~mdi-tdknf~pc~cgy~ic~fc~~~irq~lngr--cpacrr~ 62 (480)
T COG5175 13 EEDYCPLCIEPMDI-TDKNFFPCPCGYQICQFCYNNIRQNLNGR--CPACRRK 62 (480)
T ss_pred ccccCccccccccc-ccCCcccCCcccHHHHHHHHHHHhhccCC--ChHhhhh
Confidence 34559999998743 234455568999888888554321 1244 9999843
No 99
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.76 E-value=1.4 Score=48.10 Aligned_cols=36 Identities=22% Similarity=0.462 Sum_probs=28.8
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHh
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFN 45 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~ 45 (290)
.+++|.+|...+.. +.....+|+|.||.+||.+...
T Consensus 816 p~d~C~~C~~~ll~---~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLI---KPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred CccchHHhcchhhc---CcceeeeccchHHHHHHHHHHH
Confidence 36789999998752 3566679999999999988753
No 100
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=75.47 E-value=1.2 Score=42.70 Aligned_cols=56 Identities=25% Similarity=0.606 Sum_probs=37.9
Q ss_pred CCCccc--CCcccccccccc-ccccCCceEEe-CCCCcccHHHHHHHHhcCCCCCCC--CCcee
Q 022899 1 MVDEAA--AATLCSICWEEA-SETCGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCP--NCREV 58 (290)
Q Consensus 1 ~vD~~~--~~~eCsICLE~~-sds~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CP--lCR~i 58 (290)
|+|+.. .+..|+||..+. .. .......- .|-|..|.+|..+-|. .|-.+|| -|-++
T Consensus 1 l~DE~~~~~d~~CPvCksDrYLn-Pdik~linPECyHrmCESCvdRIFs-~GpAqCP~~gC~kI 62 (314)
T COG5220 1 LMDEYEEMEDRRCPVCKSDRYLN-PDIKILINPECYHRMCESCVDRIFS-RGPAQCPYKGCGKI 62 (314)
T ss_pred CcchhhhhhcccCCccccccccC-CCeEEEECHHHHHHHHHHHHHHHhc-CCCCCCCCccHHHH
Confidence 456554 355799999863 21 11122222 4999999999999885 4667899 88665
No 101
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.38 E-value=1.4 Score=42.39 Aligned_cols=52 Identities=19% Similarity=0.526 Sum_probs=33.9
Q ss_pred cCCccccccccccccccCCceEEeCC-----CCcccHHHHHHHHhcCC------CCCCCCCcee
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQC-----SHLFHLDCIGSAFNVTG------IMQCPNCREV 58 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~C-----gH~FH~~CI~swl~~k~------s~~CPlCR~i 58 (290)
..+..|=||+..=+|+.-...+ -+| .++.|..|+..|+..|. .-.||.|++.
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV-~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTE 80 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWV-HPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTE 80 (293)
T ss_pred ccceeEEEEeccCcccchhhhc-ccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcch
Confidence 3456799999875543211111 145 67899999999995332 2359999854
No 102
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=75.16 E-value=1 Score=51.03 Aligned_cols=44 Identities=20% Similarity=0.431 Sum_probs=35.1
Q ss_pred ccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 9 TLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
..|.||++.+.. .-....|+|.+|..|+..|+..+.. ||.|+.+
T Consensus 1154 ~~c~ic~dil~~----~~~I~~cgh~~c~~c~~~~l~~~s~--~~~~ksi 1197 (1394)
T KOG0298|consen 1154 FVCEICLDILRN----QGGIAGCGHEPCCRCDELWLYASSR--CPICKSI 1197 (1394)
T ss_pred cchHHHHHHHHh----cCCeeeechhHhhhHHHHHHHHhcc--Ccchhhh
Confidence 369999998863 2455689999999999999975544 9999844
No 103
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.60 E-value=2.9 Score=38.55 Aligned_cols=31 Identities=26% Similarity=0.647 Sum_probs=22.7
Q ss_pred EeCCCCcccHHHHHHHHh----cCCC-----CCCCCCcee
Q 022899 28 RLQCSHLFHLDCIGSAFN----VTGI-----MQCPNCREV 58 (290)
Q Consensus 28 ~L~CgH~FH~~CI~swl~----~k~s-----~~CPlCR~i 58 (290)
..+|+-.||.-|+..|+. ..++ -.||.|...
T Consensus 187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~P 226 (234)
T KOG3268|consen 187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDP 226 (234)
T ss_pred ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCc
Confidence 358999999999999995 1111 149999743
No 104
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=72.52 E-value=3.6 Score=46.03 Aligned_cols=52 Identities=23% Similarity=0.515 Sum_probs=36.6
Q ss_pred Cccccccccccccc-cCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 8 ATLCSICWEEASET-CGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 8 ~~eCsICLE~~sds-~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
...|.||-+++... .+...+.. .|+=-.|..|-. .=.+.++..||.|++..+
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCCchh
Confidence 45899999987322 23333333 788889999984 444578889999997644
No 105
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=71.78 E-value=1.6 Score=32.65 Aligned_cols=29 Identities=28% Similarity=0.575 Sum_probs=22.3
Q ss_pred ceEEeCCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 25 SIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 25 ~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
.-..++|+|..+..|...+ +-..||.|-+
T Consensus 19 ~~~~~pCgH~I~~~~f~~~----rYngCPfC~~ 47 (55)
T PF14447_consen 19 KGTVLPCGHLICDNCFPGE----RYNGCPFCGT 47 (55)
T ss_pred ccccccccceeeccccChh----hccCCCCCCC
Confidence 4566799999999997754 3345999964
No 106
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=71.28 E-value=4.2 Score=35.57 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=37.0
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCCCCCCCceeccC
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVT-GIMQCPNCREVENG 61 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k-~s~~CPlCR~i~~g 61 (290)
..-+|.||.|...+.---++.. =||-..|..|--..|+.. --.+||.|++..+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPne-CCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNE-CCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCccc-ccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 4568999999865421112222 389999999988888633 34679999976553
No 107
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.68 E-value=2.4 Score=41.61 Aligned_cols=28 Identities=36% Similarity=0.864 Sum_probs=22.1
Q ss_pred CCCcccHHHHHHHHh-----------cCCCCCCCCCcee
Q 022899 31 CSHLFHLDCIGSAFN-----------VTGIMQCPNCREV 58 (290)
Q Consensus 31 CgH~FH~~CI~swl~-----------~k~s~~CPlCR~i 58 (290)
|.-.+|.+|+-+|+. ..++.+||.||+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~ 363 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKN 363 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhc
Confidence 456899999999984 3457789999954
No 108
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=69.60 E-value=6.1 Score=28.34 Aligned_cols=43 Identities=28% Similarity=0.522 Sum_probs=19.7
Q ss_pred ccccccccccccccCCceEEe-CCCCcccHHHHHHHH---hcCCCCCCCCCce
Q 022899 9 TLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAF---NVTGIMQCPNCRE 57 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl---~~k~s~~CPlCR~ 57 (290)
..|+|....+. .+++. .|.|.-|.+- ..|+ ..++.-.||+|.+
T Consensus 3 L~CPls~~~i~-----~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIR-----IPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-S-----SEEEETT--SS--EEH-HHHHHHHHHS---B-TTT--
T ss_pred eeCCCCCCEEE-----eCccCCcCcccceECH-HHHHHHhhccCCeECcCCcC
Confidence 46888888876 36665 8999865443 2233 2345567999974
No 109
>PLN02195 cellulose synthase A
Probab=65.40 E-value=7 Score=43.43 Aligned_cols=53 Identities=25% Similarity=0.441 Sum_probs=37.7
Q ss_pred CCccccccccccccc-cCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 7 AATLCSICWEEASET-CGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 7 ~~~eCsICLE~~sds-~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
+...|.||-+.+..+ .+...+.. .|+--.|..|-. .=.+.++..||.|++..+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye-yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLE-YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhh-hhhhcCCccCCccCCccc
Confidence 456899999987322 23333333 888899999984 444678889999997644
No 110
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.22 E-value=4.4 Score=39.62 Aligned_cols=41 Identities=29% Similarity=0.701 Sum_probs=30.0
Q ss_pred CccccccccccccccCCceEEeCC----CCcccHHHHHHHHhcC---CCCCCC
Q 022899 8 ATLCSICWEEASETCGRSIVRLQC----SHLFHLDCIGSAFNVT---GIMQCP 53 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~C----gH~FH~~CI~swl~~k---~s~~CP 53 (290)
-..|.+|.|.++| .--.+| .|.||.-|-++.++.. +...||
T Consensus 268 pLcCTLC~ERLED-----THFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCP 315 (352)
T KOG3579|consen 268 PLCCTLCHERLED-----THFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCP 315 (352)
T ss_pred ceeehhhhhhhcc-----CceeecCCCcccceecccCHHHHHhhcCCCceeCC
Confidence 3569999999986 333467 8999999999888532 344566
No 111
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=57.67 E-value=7.4 Score=42.84 Aligned_cols=49 Identities=20% Similarity=0.470 Sum_probs=35.1
Q ss_pred CCccccccccccccccCCceEEeCCCC-----cccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSH-----LFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH-----~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
++..|-||...-.. ..+.--+|++ ..|.+|+..|+..++...|-+|...
T Consensus 11 d~~~CRICr~e~~~---d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~ 64 (1175)
T COG5183 11 DKRSCRICRTEDIR---DDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYE 64 (1175)
T ss_pred cchhceeecCCCCC---CCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecce
Confidence 45789999976321 1222225544 4799999999998888899999844
No 112
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=57.05 E-value=8.1 Score=42.43 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=33.5
Q ss_pred CCcccccccccccccc-CCceEEe-CCCCcccHHHHHHHHh----cCCCCCCCCCce
Q 022899 7 AATLCSICWEEASETC-GRSIVRL-QCSHLFHLDCIGSAFN----VTGIMQCPNCRE 57 (290)
Q Consensus 7 ~~~eCsICLE~~sds~-~~~~~~L-~CgH~FH~~CI~swl~----~k~s~~CPlCR~ 57 (290)
..++|.||.-.+++.. +.....+ +|+|.||..||.+|.. ......|+.|..
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~ 151 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEE 151 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence 4566777776665321 1222222 6999999999999984 334456899973
No 113
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=55.39 E-value=12 Score=41.89 Aligned_cols=53 Identities=23% Similarity=0.444 Sum_probs=37.2
Q ss_pred CCccccccccccccc-cCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 7 AATLCSICWEEASET-CGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 7 ~~~eCsICLE~~sds-~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
....|.||-+.+..+ .+...+.. .|+--.|..|.. .=.+.++..||.|++..+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cye-ye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYE-YERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCCchh
Confidence 456799999987322 23333333 788889999984 444578889999996544
No 115
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=53.64 E-value=9.7 Score=39.43 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=28.5
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHh
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFN 45 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~ 45 (290)
...|+||...|.+ +++|+|+|..|..|...-+.
T Consensus 4 elkc~vc~~f~~e-----piil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 4 ELKCPVCGSFYRE-----PIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccCceehhhccC-----ceEeecccHHHHHHHHhhcc
Confidence 4569999999985 88999999999999887664
No 116
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.28 E-value=8.1 Score=38.72 Aligned_cols=36 Identities=28% Similarity=0.566 Sum_probs=29.5
Q ss_pred cCCccccccccccccccCCceEEeCCCCcccHHHHHHHHh
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFN 45 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~ 45 (290)
.....|-||.+.+.. ....+.|+|.||..|+...+.
T Consensus 68 ~~~~~c~ic~~~~~~----~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG----EIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcc----hhhhcCCCcHHHHHHHHHHhh
Confidence 345789999998752 456679999999999999885
No 117
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.82 E-value=2.3 Score=39.63 Aligned_cols=49 Identities=29% Similarity=0.521 Sum_probs=37.5
Q ss_pred Cccccccccccccc-cCCceEEeC--------CCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 8 ATLCSICWEEASET-CGRSIVRLQ--------CSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 8 ~~eCsICLE~~sds-~~~~~~~L~--------CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
...|.||...++.+ ....+..+. |+|..|..|+..-+...+ ..||.|+.
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~-~~cp~~~~ 264 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG-IKCPFCTW 264 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh-hcCCcccc
Confidence 46699999998733 344455555 999999999999886445 78999985
No 118
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=47.80 E-value=12 Score=41.10 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=21.1
Q ss_pred eEEeCCCCcccHHHHHHHHhcCCCCCCCC
Q 022899 26 IVRLQCSHLFHLDCIGSAFNVTGIMQCPN 54 (290)
Q Consensus 26 ~~~L~CgH~FH~~CI~swl~~k~s~~CPl 54 (290)
..-..|+|.-|.+|...||.... .||.
T Consensus 1043 ~~Cg~C~Hv~H~sc~~eWf~~gd--~Cps 1069 (1081)
T KOG0309|consen 1043 NFCGTCGHVGHTSCMMEWFRTGD--VCPS 1069 (1081)
T ss_pred hhhccccccccHHHHHHHHhcCC--cCCC
Confidence 33457999999999999997554 4873
No 119
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.58 E-value=10 Score=34.75 Aligned_cols=28 Identities=32% Similarity=0.661 Sum_probs=20.8
Q ss_pred ceEEeCCCC-cccHHHHHHHHhcCCCCCCCCCcee
Q 022899 25 SIVRLQCSH-LFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 25 ~~~~L~CgH-~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
.+..++|.| .+|..|-.+ ...||+|+.+
T Consensus 170 ~VlllPCrHl~lC~~C~~~------~~~CPiC~~~ 198 (207)
T KOG1100|consen 170 TVLLLPCRHLCLCGICDES------LRICPICRSP 198 (207)
T ss_pred eEEeecccceEeccccccc------CccCCCCcCh
Confidence 466679998 589989653 3459999854
No 120
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=45.49 E-value=13 Score=27.36 Aligned_cols=28 Identities=25% Similarity=0.766 Sum_probs=19.8
Q ss_pred eCC-CCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 29 LQC-SHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 29 L~C-gH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
..| +|..|..|+...+. .+..||+|...
T Consensus 16 i~C~dHYLCl~CLt~ml~--~s~~C~iC~~~ 44 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLS--RSDRCPICGKP 44 (50)
T ss_dssp EE-SS-EEEHHHHHHT-S--SSSEETTTTEE
T ss_pred eeecchhHHHHHHHHHhc--cccCCCcccCc
Confidence 356 78999999999885 44559999854
No 121
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.02 E-value=15 Score=36.55 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=33.4
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCC
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNC 55 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlC 55 (290)
-..|++|.-.+..+.+..-++-.|+|.||..|...|.. ....|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~--~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKT--HNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhh--CCccccCc
Confidence 35699998887655566666667999999999999864 33346544
No 122
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=41.30 E-value=14 Score=35.72 Aligned_cols=51 Identities=27% Similarity=0.550 Sum_probs=31.8
Q ss_pred CccccccccccccccCCce-EE-eCCCCcccHHHHHHHH-hcCC------CCCCCCCcee
Q 022899 8 ATLCSICWEEASETCGRSI-VR-LQCSHLFHLDCIGSAF-NVTG------IMQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~-~~-L~CgH~FH~~CI~swl-~~k~------s~~CPlCR~i 58 (290)
..+|.+|.+.+.+.+.... .. ..|.-.+|..|+..-+ .... .-.||.|+++
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~ 241 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKF 241 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhce
Confidence 3689999999843221111 11 1488899999999843 2111 1249999875
No 123
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.09 E-value=6.8 Score=38.48 Aligned_cols=27 Identities=33% Similarity=0.726 Sum_probs=19.8
Q ss_pred eEEeCCCCc-ccHHHHHHHHhcCCCCCCCCCcee
Q 022899 26 IVRLQCSHL-FHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 26 ~~~L~CgH~-FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
-+.|.|||. -|.+|..+. ..||+||+.
T Consensus 313 CvfLeCGHmVtCt~CGkrm------~eCPICRqy 340 (350)
T KOG4275|consen 313 CVFLECGHMVTCTKCGKRM------NECPICRQY 340 (350)
T ss_pred eEEeecCcEEeehhhcccc------ccCchHHHH
Confidence 456799995 788886653 259999943
No 124
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.99 E-value=9.7 Score=33.71 Aligned_cols=67 Identities=21% Similarity=0.494 Sum_probs=40.2
Q ss_pred CCccccccccc-cccccCCceEEeCCCCcccHHHHHHHHhc--CCCCCCCCCcee-----ccCcccccccCCCCCCC
Q 022899 7 AATLCSICWEE-ASETCGRSIVRLQCSHLFHLDCIGSAFNV--TGIMQCPNCREV-----ENGVWMRFEINDNDEIT 75 (290)
Q Consensus 7 ~~~eCsICLE~-~sds~~~~~~~L~CgH~FH~~CI~swl~~--k~s~~CPlCR~i-----~~g~~l~a~~s~s~~e~ 75 (290)
++.+|.||+-. |.++.++.- .=|.-.||..|-.+.... +-.-+|-+|++. -.+.|.|..++.+...-
T Consensus 64 ddatC~IC~KTKFADG~GH~C--~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ksg~wf~~sgs~~~~~p 138 (169)
T KOG3799|consen 64 DDATCGICHKTKFADGCGHNC--SYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWFYNSGSNTPQQP 138 (169)
T ss_pred cCcchhhhhhcccccccCccc--chhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhcchHHHhcCCCCCCCc
Confidence 46789999985 554322221 125556777776654322 122369999843 47889998777654443
No 125
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.10 E-value=2.4 Score=42.84 Aligned_cols=47 Identities=23% Similarity=0.529 Sum_probs=35.7
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
...|+||.+.++... .....+.|+|..|-+||..|+.. ...||.|+.
T Consensus 196 v~sl~I~~~slK~~y-~k~~~~~~g~~~~~~kL~k~L~~--~~kl~~~~r 242 (465)
T KOG0827|consen 196 VGSLSICFESLKQNY-DKISAIVCGHIYHHGKLSKWLAT--KRKLPSCRR 242 (465)
T ss_pred HhhhHhhHHHHHHHH-HHHHHHhhcccchhhHHHHHHHH--HHHhHHHHh
Confidence 567999999886421 13445689999999999999975 345999983
No 126
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.41 E-value=22 Score=35.50 Aligned_cols=29 Identities=34% Similarity=0.725 Sum_probs=19.6
Q ss_pred ceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 25 SIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 25 ~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
..+-++|||+-| |+.-. +...+||+||..
T Consensus 317 ~~~fvpcGh~cc--ct~cs---~~l~~CPvCR~r 345 (355)
T KOG1571|consen 317 SAVFVPCGHVCC--CTLCS---KHLPQCPVCRQR 345 (355)
T ss_pred ceeeecCCcEEE--chHHH---hhCCCCchhHHH
Confidence 455679999977 65543 234459999943
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=37.30 E-value=30 Score=37.85 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=28.3
Q ss_pred ccccccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCC
Q 022899 9 TLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPN 54 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPl 54 (290)
..|.+|-..+.. ....- .|+|.-|.+|+++|+... .-||.
T Consensus 780 ~~CtVC~~vi~G----~~~~c~~C~H~gH~sh~~sw~~~~--s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG----VDVWCQVCGHGGHDSHLKSWFFKA--SPCAK 820 (839)
T ss_pred cCceeecceeee----eEeecccccccccHHHHHHHHhcC--CCCcc
Confidence 468888877753 22333 799999999999999733 33654
No 128
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.05 E-value=15 Score=40.24 Aligned_cols=37 Identities=27% Similarity=0.635 Sum_probs=28.2
Q ss_pred ccccccccccccccC--CceEEeCCCCcccHHHHHHHHh
Q 022899 9 TLCSICWEEASETCG--RSIVRLQCSHLFHLDCIGSAFN 45 (290)
Q Consensus 9 ~eCsICLE~~sds~~--~~~~~L~CgH~FH~~CI~swl~ 45 (290)
..|+.|.+....++. ..++.+.|+|+||..|+..-..
T Consensus 785 ~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~ 823 (846)
T KOG2066|consen 785 ERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESL 823 (846)
T ss_pred hhhhhhcccccccCcccceeeEEEccchhhhcccccHHH
Confidence 469999998653221 3567789999999999987664
No 129
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=33.29 E-value=25 Score=33.19 Aligned_cols=42 Identities=24% Similarity=0.562 Sum_probs=31.5
Q ss_pred CccccccccccccccCCceEE-eCCCCcccHHHHHHHHhcCCCCCCCCCc
Q 022899 8 ATLCSICWEEASETCGRSIVR-LQCSHLFHLDCIGSAFNVTGIMQCPNCR 56 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~-L~CgH~FH~~CI~swl~~k~s~~CPlCR 56 (290)
...|.+|...+-. ... -.|+=.+|..|++..++. ...||.|-
T Consensus 181 lk~Cn~Ch~LvIq-----g~rCg~c~i~~h~~c~qty~q~--~~~cphc~ 223 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQ-----GIRCGSCNIQYHRGCIQTYLQR--RDICPHCG 223 (235)
T ss_pred HHHHhHhHHHhhe-----eeccCcccchhhhHHHHHHhcc--cCcCCchh
Confidence 4579999987642 222 267888999999999974 56799995
No 130
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=32.93 E-value=61 Score=26.69 Aligned_cols=53 Identities=17% Similarity=0.448 Sum_probs=31.6
Q ss_pred cCCcccccccccccccc---CCceEEeCC---CCcccHHHHHHHHh-------cCCCCCCCCCcee
Q 022899 6 AAATLCSICWEEASETC---GRSIVRLQC---SHLFHLDCIGSAFN-------VTGIMQCPNCREV 58 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~---~~~~~~L~C---gH~FH~~CI~swl~-------~k~s~~CPlCR~i 58 (290)
.....|-.|...-.+.. ........| .-.||..||...+. ....-.||.||.+
T Consensus 5 ~~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 5 VNGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 34566888877532100 000011345 77899999888774 2345679999976
No 131
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.96 E-value=55 Score=35.32 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=32.4
Q ss_pred cccccccccccccCCceEEeCCCC-cccHHHHHHHHhcCC----CCCCCCCce
Q 022899 10 LCSICWEEASETCGRSIVRLQCSH-LFHLDCIGSAFNVTG----IMQCPNCRE 57 (290)
Q Consensus 10 eCsICLE~~sds~~~~~~~L~CgH-~FH~~CI~swl~~k~----s~~CPlCR~ 57 (290)
.|.||-....- ++.-.|+| ..|..|..+...... ...||+||.
T Consensus 2 ~c~ic~~s~~~-----~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~ 49 (669)
T KOG2231|consen 2 SCAICAFSPDF-----VGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRR 49 (669)
T ss_pred CcceeecCccc-----cccccccccccchhhhhhhhhhcccccccccCccccc
Confidence 59999987652 44558999 899999988764333 566899984
No 132
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=27.79 E-value=46 Score=33.29 Aligned_cols=45 Identities=20% Similarity=0.485 Sum_probs=31.9
Q ss_pred cccccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCCCCCCCc
Q 022899 10 LCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVT-GIMQCPNCR 56 (290)
Q Consensus 10 eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k-~s~~CPlCR 56 (290)
.|++--+.-.+ +-.++.|.|||..-.+.++...+.+ .++.||.|-
T Consensus 338 iCPVlKe~~t~--ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 338 ICPVLKELCTD--ENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eccccHhhhcc--cCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 46665554332 3467888999999999999877522 246799995
No 133
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=25.49 E-value=51 Score=24.97 Aligned_cols=41 Identities=29% Similarity=0.697 Sum_probs=25.3
Q ss_pred cccccccccccccCC-ceEEeCCCCcccHHHHHHHHhcCCCCCCCCCc
Q 022899 10 LCSICWEEASETCGR-SIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCR 56 (290)
Q Consensus 10 eCsICLE~~sds~~~-~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR 56 (290)
.|-.|-.++..+... .+-.. ..+||.+|....|. +. ||+|-
T Consensus 7 nCE~C~~dLp~~s~~A~ICSf--ECTFC~~C~e~~l~--~~--CPNCg 48 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSF--ECTFCADCAETMLN--GV--CPNCG 48 (57)
T ss_pred CccccCCCCCCCCCcceEEeE--eCcccHHHHHHHhc--Cc--CcCCC
Confidence 466676776432211 11122 44799999998774 44 99996
No 134
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=25.30 E-value=48 Score=32.84 Aligned_cols=47 Identities=26% Similarity=0.616 Sum_probs=32.5
Q ss_pred ccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 9 TLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
..|+||.+.... ......-.+|++..|..|+..-.. +...||.||+.
T Consensus 250 ~s~p~~~~~~~~-~d~~~lP~~~~~~~~l~~~~t~~~--~~~~~~~~rk~ 296 (327)
T KOG2068|consen 250 PSCPICYEDLDL-TDSNFLPCPCGFRLCLFCHKTISD--GDGRCPGCRKP 296 (327)
T ss_pred CCCCCCCCcccc-cccccccccccccchhhhhhcccc--cCCCCCccCCc
Confidence 579999998631 122333447888888888887664 44569999954
No 135
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=23.77 E-value=26 Score=35.60 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=0.0
Q ss_pred ceEEeCCCCcccHHHHHHHHhcC----CCCCCCCCcee
Q 022899 25 SIVRLQCSHLFHLDCIGSAFNVT----GIMQCPNCREV 58 (290)
Q Consensus 25 ~~~~L~CgH~FH~~CI~swl~~k----~s~~CPlCR~i 58 (290)
..+-+.|||++...= |-..+ ....||+||+.
T Consensus 303 P~VYl~CGHVhG~h~---Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 303 PWVYLNCGHVHGYHN---WGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp --------------------------------------
T ss_pred ceeeccccceeeecc---cccccccccccccCCCcccc
Confidence 456679999887654 54211 35679999965
No 136
>KOG3258 consensus Parvulin-like peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=23.41 E-value=44 Score=28.70 Aligned_cols=43 Identities=33% Similarity=0.566 Sum_probs=31.4
Q ss_pred hhccCCCCcccCCCCCCCCceeEeeccCCc-----------ccccccccceecC
Q 022899 199 RRSNGLLGWLPAEHVPSPPLQVVHHVPAST-----------STIHNYHAAAVHG 241 (290)
Q Consensus 199 r~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 241 (290)
-|++++|+|++...+--|--.+.--+|.|| -|-|.||...|-|
T Consensus 78 ar~GGDLGW~~RG~MvGPFQdaAFalpvs~~~~pv~TdpP~KtkfGYHiImvEG 131 (133)
T KOG3258|consen 78 ARQGGDLGWMTRGSMVGPFQDAAFALPVSTVDKPVYTDPPVKTKFGYHIIMVEG 131 (133)
T ss_pred cccCCcccceeccccccchhhhhhcccccccCCccccCCCcccccceEEEEecc
Confidence 578999999998887766555555555552 3678899887766
No 137
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=23.23 E-value=28 Score=36.81 Aligned_cols=24 Identities=29% Similarity=0.789 Sum_probs=18.6
Q ss_pred eCCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 29 LQCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 29 L~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
..|+++||..|+.+ +++.||.|-.
T Consensus 535 ~~C~avfH~~C~~r-----~s~~CPrC~R 558 (580)
T KOG1829|consen 535 STCLAVFHKKCLRR-----KSPCCPRCER 558 (580)
T ss_pred HHHHHHHHHHHHhc-----cCCCCCchHH
Confidence 38999999999775 3444999953
No 138
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=21.74 E-value=88 Score=23.38 Aligned_cols=34 Identities=21% Similarity=0.534 Sum_probs=24.6
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHH
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGS 42 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~s 42 (290)
...|.+|-+.|++ ++..++=-.|+-.+|++|...
T Consensus 5 ~~~C~~Cg~~~~~-~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKD-GDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccC-CCCEEECCCCCCcccHHHHhh
Confidence 4679999999963 122333348999999999654
No 139
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=21.37 E-value=53 Score=28.99 Aligned_cols=23 Identities=30% Similarity=0.709 Sum_probs=15.9
Q ss_pred CCCCcccHHHHHHHHh---------cCCCCCCCCCce
Q 022899 30 QCSHLFHLDCIGSAFN---------VTGIMQCPNCRE 57 (290)
Q Consensus 30 ~CgH~FH~~CI~swl~---------~k~s~~CPlCR~ 57 (290)
.++|.|-. ||. ..+...||+|-.
T Consensus 9 ~~gH~FEg-----WF~ss~~fd~Q~~~glv~CP~Cgs 40 (148)
T PF06676_consen 9 ENGHEFEG-----WFRSSAAFDRQQARGLVSCPVCGS 40 (148)
T ss_pred CCCCccce-----ecCCHHHHHHHHHcCCccCCCCCC
Confidence 34788855 875 245678999973
Done!