Query 022899
Match_columns 290
No_of_seqs 182 out of 1675
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 13:00:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ep4_A Ring finger protein 24; 99.1 9.1E-11 3.1E-15 85.9 5.7 50 6-59 13-62 (74)
2 2ecm_A Ring finger and CHY zin 99.1 6E-11 2.1E-15 81.9 4.4 51 6-59 3-53 (55)
3 2ect_A Ring finger protein 126 99.1 1.4E-10 4.7E-15 85.8 5.3 50 7-60 14-63 (78)
4 2yur_A Retinoblastoma-binding 99.0 1.4E-10 4.9E-15 85.7 4.8 47 7-58 14-61 (74)
5 2kiz_A E3 ubiquitin-protein li 99.0 2E-10 6.7E-15 83.1 5.3 48 7-58 13-60 (69)
6 2ea6_A Ring finger protein 4; 99.0 1.7E-10 5.8E-15 82.5 4.8 51 6-58 13-65 (69)
7 1v87_A Deltex protein 2; ring- 99.0 2.6E-10 9E-15 89.8 6.4 54 7-60 24-93 (114)
8 1x4j_A Ring finger protein 38; 99.0 1.1E-10 3.8E-15 86.0 4.0 49 6-58 21-69 (75)
9 1iym_A EL5; ring-H2 finger, ub 99.0 1.2E-10 4.2E-15 80.5 3.6 48 7-58 4-52 (55)
10 2ecl_A Ring-box protein 2; RNF 99.0 1.8E-10 6.2E-15 87.2 4.6 50 7-58 14-73 (81)
11 3ng2_A RNF4, snurf, ring finge 99.0 2.1E-10 7.2E-15 82.8 4.5 51 6-58 8-60 (71)
12 2l0b_A E3 ubiquitin-protein li 99.0 2.3E-10 8E-15 88.0 4.5 48 7-58 39-86 (91)
13 2ecy_A TNF receptor-associated 99.0 3.1E-10 1.1E-14 81.7 4.4 48 6-59 13-60 (66)
14 2xeu_A Ring finger protein 4; 99.0 3.7E-10 1.3E-14 79.6 4.4 50 7-58 2-53 (64)
15 1chc_A Equine herpes virus-1 r 99.0 4.8E-10 1.6E-14 80.6 4.6 47 7-59 4-50 (68)
16 2djb_A Polycomb group ring fin 99.0 6.8E-10 2.3E-14 81.3 5.4 47 7-60 14-61 (72)
17 2ysl_A Tripartite motif-contai 99.0 5.7E-10 2E-14 81.1 5.0 48 6-58 18-66 (73)
18 2ct2_A Tripartite motif protei 99.0 8.4E-10 2.9E-14 82.5 5.9 52 6-58 13-65 (88)
19 2d8t_A Dactylidin, ring finger 98.9 4.2E-10 1.4E-14 82.2 3.7 47 7-60 14-60 (71)
20 2ysj_A Tripartite motif-contai 98.9 1.1E-09 3.7E-14 78.0 5.0 45 6-55 18-63 (63)
21 2ecw_A Tripartite motif-contai 98.9 1.3E-09 4.5E-14 80.4 5.4 48 7-59 18-69 (85)
22 3ztg_A E3 ubiquitin-protein li 98.9 9.1E-10 3.1E-14 83.7 4.5 47 7-58 12-59 (92)
23 2ecj_A Tripartite motif-contai 98.9 1.1E-09 3.9E-14 76.0 4.3 45 6-55 13-58 (58)
24 3dpl_R Ring-box protein 1; ubi 98.9 1.1E-09 3.7E-14 88.1 4.7 50 7-58 36-98 (106)
25 2ecv_A Tripartite motif-contai 98.9 1.3E-09 4.3E-14 80.5 4.4 49 6-59 17-69 (85)
26 2egp_A Tripartite motif-contai 98.9 6.1E-10 2.1E-14 81.9 2.5 49 6-59 10-63 (79)
27 1t1h_A Gspef-atpub14, armadill 98.9 1.9E-09 6.6E-14 79.5 5.2 47 6-58 6-52 (78)
28 2csy_A Zinc finger protein 183 98.8 2.1E-09 7.2E-14 80.2 4.6 46 7-59 14-59 (81)
29 2ecn_A Ring finger protein 141 98.8 9.7E-10 3.3E-14 79.6 2.4 45 6-58 13-57 (70)
30 4ayc_A E3 ubiquitin-protein li 98.8 2.1E-09 7.1E-14 88.3 4.1 44 9-59 54-97 (138)
31 2d8s_A Cellular modulator of i 98.8 2.9E-09 9.8E-14 81.7 4.5 51 6-59 13-68 (80)
32 3lrq_A E3 ubiquitin-protein li 98.8 2.7E-09 9.2E-14 83.3 4.4 46 8-59 22-68 (100)
33 1g25_A CDK-activating kinase a 98.8 4E-09 1.4E-13 75.6 4.9 50 8-59 3-53 (65)
34 4ap4_A E3 ubiquitin ligase RNF 98.8 5.6E-09 1.9E-13 82.6 5.7 52 6-59 5-58 (133)
35 3fl2_A E3 ubiquitin-protein li 98.8 4.5E-09 1.6E-13 84.3 4.5 46 8-59 52-97 (124)
36 4a0k_B E3 ubiquitin-protein li 98.8 9.8E-10 3.4E-14 90.2 0.2 50 7-58 47-109 (117)
37 2ckl_A Polycomb group ring fin 98.7 1E-08 3.5E-13 80.4 4.5 45 7-58 14-59 (108)
38 2y43_A E3 ubiquitin-protein li 98.7 1.1E-08 3.8E-13 79.0 4.6 45 8-59 22-67 (99)
39 3l11_A E3 ubiquitin-protein li 98.7 2.5E-09 8.6E-14 84.6 0.8 45 8-58 15-59 (115)
40 2ckl_B Ubiquitin ligase protei 98.7 1.3E-08 4.3E-13 85.5 4.5 46 8-59 54-100 (165)
41 3hct_A TNF receptor-associated 98.7 1E-08 3.5E-13 81.9 3.7 47 7-59 17-63 (118)
42 1jm7_A BRCA1, breast cancer ty 98.7 1.3E-08 4.5E-13 79.3 3.9 46 8-58 21-67 (112)
43 1z6u_A NP95-like ring finger p 98.6 1.7E-08 5.8E-13 84.8 4.6 45 8-58 78-122 (150)
44 1e4u_A Transcriptional repress 98.6 2.9E-08 9.8E-13 75.5 5.3 52 6-59 9-60 (78)
45 2ct0_A Non-SMC element 1 homol 98.6 2.9E-08 9.9E-13 75.7 4.9 49 6-58 13-61 (74)
46 4ap4_A E3 ubiquitin ligase RNF 98.6 3.3E-08 1.1E-12 78.1 4.3 51 7-59 71-123 (133)
47 1rmd_A RAG1; V(D)J recombinati 98.6 4.3E-08 1.5E-12 77.6 4.2 46 8-59 23-68 (116)
48 2kr4_A Ubiquitin conjugation f 98.5 1E-07 3.4E-12 72.9 5.2 46 7-59 13-58 (85)
49 3knv_A TNF receptor-associated 98.5 2.4E-08 8.1E-13 83.3 1.4 45 7-57 30-74 (141)
50 2c2l_A CHIP, carboxy terminus 98.5 1.1E-07 3.7E-12 83.7 4.5 47 7-59 207-253 (281)
51 2kre_A Ubiquitin conjugation f 98.4 1.6E-07 5.4E-12 74.3 4.7 45 7-58 28-72 (100)
52 1wgm_A Ubiquitin conjugation f 98.4 2E-07 6.7E-12 73.5 5.1 45 7-58 21-66 (98)
53 3hcs_A TNF receptor-associated 98.4 1.2E-07 4E-12 79.7 3.5 48 7-60 17-64 (170)
54 1jm7_B BARD1, BRCA1-associated 98.4 6E-08 2.1E-12 77.3 1.3 42 8-58 22-64 (117)
55 1bor_A Transcription factor PM 98.4 4.4E-08 1.5E-12 69.1 0.3 43 6-58 4-46 (56)
56 4ic3_A E3 ubiquitin-protein li 98.4 1E-07 3.5E-12 70.8 1.9 41 8-59 24-65 (74)
57 2vje_B MDM4 protein; proto-onc 98.4 1.9E-07 6.3E-12 67.7 3.1 48 5-59 4-54 (63)
58 2yu4_A E3 SUMO-protein ligase 98.4 3.4E-07 1.2E-11 71.0 4.7 47 7-58 6-59 (94)
59 2vje_A E3 ubiquitin-protein li 98.4 1.7E-07 5.9E-12 68.1 2.8 46 7-59 7-55 (64)
60 2y1n_A E3 ubiquitin-protein li 98.4 2.1E-07 7.3E-12 90.1 4.2 47 8-60 332-378 (389)
61 2ecg_A Baculoviral IAP repeat- 98.2 8.9E-07 3.1E-11 65.6 3.1 42 8-60 25-67 (75)
62 2f42_A STIP1 homology and U-bo 98.2 1.4E-06 4.8E-11 76.2 4.8 46 7-58 105-150 (179)
63 2yho_A E3 ubiquitin-protein li 98.2 6.4E-07 2.2E-11 67.8 2.1 43 8-61 18-61 (79)
64 3htk_C E3 SUMO-protein ligase 98.1 1.6E-06 5.4E-11 80.4 4.5 47 7-58 180-229 (267)
65 1wim_A KIAA0161 protein; ring 98.1 1.1E-06 3.8E-11 67.4 2.3 50 6-58 3-61 (94)
66 2ea5_A Cell growth regulator w 98.1 1.8E-06 6E-11 63.7 3.2 43 7-60 14-57 (68)
67 1vyx_A ORF K3, K3RING; zinc-bi 98.1 1.9E-06 6.3E-11 62.7 3.1 48 6-58 4-56 (60)
68 3k1l_B Fancl; UBC, ring, RWD, 98.0 1.7E-06 5.7E-11 83.4 1.2 52 7-58 307-370 (381)
69 2bay_A PRE-mRNA splicing facto 97.4 8.8E-05 3E-09 53.8 3.1 43 9-58 4-47 (61)
70 3vk6_A E3 ubiquitin-protein li 97.3 0.0002 6.7E-09 58.0 4.1 46 10-60 3-48 (101)
71 3nw0_A Non-structural maintena 96.9 0.00077 2.6E-08 60.8 5.0 46 7-57 179-225 (238)
72 3t6p_A Baculoviral IAP repeat- 94.8 0.0062 2.1E-07 57.7 0.8 30 25-60 307-337 (345)
73 3v43_A Histone acetyltransfera 90.6 0.55 1.9E-05 37.2 6.2 49 8-56 5-62 (112)
74 2jun_A Midline-1; B-BOX, TRIM, 89.6 0.14 4.7E-06 39.0 1.8 33 7-43 2-36 (101)
75 1weo_A Cellulose synthase, cat 87.3 1.7 5.9E-05 34.5 6.8 53 7-60 15-69 (93)
76 2kwj_A Zinc finger protein DPF 86.8 0.31 1.1E-05 38.9 2.3 48 9-56 2-59 (114)
77 2ko5_A Ring finger protein Z; 83.3 0.85 2.9E-05 36.6 3.3 45 7-60 27-72 (99)
78 2ysm_A Myeloid/lymphoid or mix 82.8 0.76 2.6E-05 36.0 2.9 47 7-56 6-55 (111)
79 2k16_A Transcription initiatio 82.0 0.57 1.9E-05 34.4 1.7 47 8-57 18-67 (75)
80 2ku3_A Bromodomain-containing 79.7 0.45 1.5E-05 35.4 0.5 56 1-57 9-65 (71)
81 1we9_A PHD finger family prote 75.7 0.5 1.7E-05 33.6 -0.2 50 6-57 4-57 (64)
82 3lqh_A Histone-lysine N-methyl 75.1 0.82 2.8E-05 39.8 0.9 56 8-63 2-68 (183)
83 1wep_A PHF8; structural genomi 75.0 3.1 0.0001 30.9 4.0 48 8-58 12-63 (79)
84 2lri_C Autoimmune regulator; Z 73.8 2.5 8.5E-05 30.9 3.1 46 6-57 10-58 (66)
85 1weu_A Inhibitor of growth fam 65.5 1.9 6.4E-05 33.8 0.9 45 8-57 36-84 (91)
86 1wen_A Inhibitor of growth fam 63.1 2.6 9E-05 31.1 1.3 45 8-57 16-64 (71)
87 2ri7_A Nucleosome-remodeling f 62.2 2 6.7E-05 35.9 0.5 49 7-58 7-59 (174)
88 2cs3_A Protein C14ORF4, MY039 61.6 3.9 0.00013 32.2 2.1 46 7-55 14-64 (93)
89 2lv9_A Histone-lysine N-methyl 60.1 2.8 9.6E-05 32.6 1.0 45 9-57 29-75 (98)
90 2kgg_A Histone demethylase jar 59.7 2.2 7.6E-05 29.4 0.4 45 10-56 4-52 (52)
91 2lbm_A Transcriptional regulat 59.4 11 0.00036 31.7 4.6 45 7-57 62-116 (142)
92 2l5u_A Chromodomain-helicase-D 58.1 5.7 0.00019 28.2 2.3 45 7-57 10-57 (61)
93 3c6w_A P28ING5, inhibitor of g 56.4 1.3 4.3E-05 31.7 -1.4 48 5-57 6-57 (59)
94 3o70_A PHD finger protein 13; 56.1 1.7 5.9E-05 31.8 -0.7 47 6-56 17-65 (68)
95 1f62_A Transcription factor WS 56.0 5.2 0.00018 27.0 1.7 45 10-57 2-49 (51)
96 3i2d_A E3 SUMO-protein ligase 55.6 11 0.00036 36.4 4.4 45 9-58 250-297 (371)
97 2yt5_A Metal-response element- 54.0 1.3 4.4E-05 31.6 -1.7 51 6-57 4-60 (66)
98 2l43_A N-teminal domain from h 52.9 2.3 7.9E-05 32.6 -0.5 50 7-57 24-74 (88)
99 3u5n_A E3 ubiquitin-protein li 48.4 5.3 0.00018 34.4 1.0 46 7-58 6-54 (207)
100 3kqi_A GRC5, PHD finger protei 45.7 5.4 0.00018 29.3 0.5 48 8-58 10-61 (75)
101 3ql9_A Transcriptional regulat 43.6 26 0.0009 28.9 4.4 47 7-58 56-111 (129)
102 2g6q_A Inhibitor of growth pro 43.1 2.7 9.3E-05 30.3 -1.4 46 7-57 10-59 (62)
103 3o36_A Transcription intermedi 42.4 7.2 0.00024 32.9 0.8 48 7-59 3-52 (184)
104 4fo9_A E3 SUMO-protein ligase 40.6 27 0.00091 33.5 4.6 44 10-58 217-263 (360)
105 1wee_A PHD finger family prote 38.7 4 0.00014 29.8 -1.2 47 8-57 16-65 (72)
106 2xb1_A Pygopus homolog 2, B-ce 34.7 8.4 0.00029 30.3 0.1 48 8-57 3-60 (105)
107 1wem_A Death associated transc 33.3 15 0.0005 26.8 1.2 45 9-57 17-69 (76)
108 3o7a_A PHD finger protein 13 v 33.3 7.3 0.00025 26.7 -0.5 41 13-56 8-50 (52)
109 2vpb_A Hpygo1, pygopus homolog 31.6 17 0.00059 26.3 1.3 33 8-42 8-42 (65)
110 3asl_A E3 ubiquitin-protein li 31.0 15 0.0005 26.9 0.8 28 30-57 38-68 (70)
111 2ro1_A Transcription intermedi 30.6 10 0.00034 32.6 -0.2 46 8-58 2-49 (189)
112 2e6s_A E3 ubiquitin-protein li 29.5 8.6 0.0003 28.8 -0.6 44 10-56 28-75 (77)
113 3kv5_D JMJC domain-containing 29.4 11 0.00038 37.1 -0.0 46 10-58 39-88 (488)
114 3m62_A Ubiquitin conjugation f 29.2 53 0.0018 35.4 5.0 45 7-58 890-935 (968)
115 2rsd_A E3 SUMO-protein ligase 27.7 4.8 0.00016 29.1 -2.3 45 9-57 11-64 (68)
116 1wev_A Riken cDNA 1110020M19; 27.2 6.1 0.00021 30.1 -1.9 49 8-57 16-71 (88)
117 1wil_A KIAA1045 protein; ring 25.1 34 0.0012 26.8 2.0 34 7-43 14-47 (89)
118 1wew_A DNA-binding family prot 24.2 20 0.00069 26.4 0.5 46 8-57 16-71 (78)
119 1z60_A TFIIH basal transcripti 23.6 66 0.0023 23.1 3.2 43 9-55 16-58 (59)
120 2e6r_A Jumonji/ARID domain-con 23.4 99 0.0034 23.5 4.4 41 96-158 15-64 (92)
121 2zet_C Melanophilin; complex, 23.0 36 0.0012 28.6 1.9 60 7-67 67-131 (153)
122 3ukw_C Bimax1 peptide; arm rep 22.6 32 0.0011 21.3 1.1 19 196-214 3-21 (28)
123 3ukx_C Bimax2 peptide; arm rep 21.9 39 0.0013 20.9 1.4 19 196-214 3-21 (28)
124 1wen_A Inhibitor of growth fam 21.8 53 0.0018 24.0 2.4 24 121-159 41-64 (71)
No 1
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=9.1e-11 Score=85.94 Aligned_cols=50 Identities=26% Similarity=0.572 Sum_probs=39.8
Q ss_pred cCCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
.....|+||++.+.+ ...+..++|+|.||..||..|++.+. +||+||+..
T Consensus 13 ~~~~~C~IC~~~~~~--~~~~~~~~C~H~f~~~Ci~~~~~~~~--~CP~Cr~~~ 62 (74)
T 2ep4_A 13 NLHELCAVCLEDFKP--RDELGICPCKHAFHRKCLIKWLEVRK--VCPLCNMPV 62 (74)
T ss_dssp CCSCBCSSSCCBCCS--SSCEEEETTTEEEEHHHHHHHHHHCS--BCTTTCCBC
T ss_pred CCCCCCcCCCcccCC--CCcEEEcCCCCEecHHHHHHHHHcCC--cCCCcCccc
Confidence 346789999999864 33456679999999999999997443 699999653
No 2
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.10 E-value=6e-11 Score=81.93 Aligned_cols=51 Identities=25% Similarity=0.589 Sum_probs=41.1
Q ss_pred cCCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
.+..+|+||++.+.+ ++..+..++|+|.||..||..|+..+ ..||+||+..
T Consensus 3 ~~~~~C~IC~~~~~~-~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHT-SRVVAHVLPCGHLLHRTCYEEMLKEG--YRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCT-TTSCEEECTTSCEEETTHHHHHHHHT--CCCTTSCCSS
T ss_pred CCCCcCcccChhhcC-CCcCeEecCCCCcccHHHHHHHHHcC--CcCCCCCCcC
Confidence 456789999999863 23457778999999999999999754 6699999653
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.06 E-value=1.4e-10 Score=85.75 Aligned_cols=50 Identities=34% Similarity=0.712 Sum_probs=39.8
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
...+|+||++.+.+ ...+..++|+|.||..||..|+.. ...||+||+...
T Consensus 14 ~~~~C~IC~~~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 63 (78)
T 2ect_A 14 SGLECPVCKEDYAL--GESVRQLPCNHLFHDSCIVPWLEQ--HDSCPVCRKSLT 63 (78)
T ss_dssp SSCCCTTTTSCCCT--TSCEEECTTSCEEETTTTHHHHTT--TCSCTTTCCCCC
T ss_pred CCCCCeeCCccccC--CCCEEEeCCCCeecHHHHHHHHHc--CCcCcCcCCccC
Confidence 46789999999864 235567799999999999999963 357999996533
No 4
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.05 E-value=1.4e-10 Score=85.73 Aligned_cols=47 Identities=26% Similarity=0.627 Sum_probs=40.0
Q ss_pred CCccccccccccccccCCceEEeC-CCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRLQ-CSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~-CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
....|+||++.+.+ ++.++ |+|.||..||..|+..++...||+||+.
T Consensus 14 ~~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~ 61 (74)
T 2yur_A 14 DELLCLICKDIMTD-----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 61 (74)
T ss_dssp GGGSCSSSCCCCTT-----CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCS
T ss_pred CCCCCcCCChHHhC-----CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCc
Confidence 45679999999974 67788 9999999999999976555789999963
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.04 E-value=2e-10 Score=83.07 Aligned_cols=48 Identities=35% Similarity=0.771 Sum_probs=38.9
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
....|+||++.+.. +..+..++|+|.||..||..|+..+. .||+||+.
T Consensus 13 ~~~~C~IC~~~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~~~--~CP~Cr~~ 60 (69)
T 2kiz_A 13 TEEKCTICLSILEE--GEDVRRLPCMHLFHQVCVDQWLITNK--KCPICRVD 60 (69)
T ss_dssp CCCSBTTTTBCCCS--SSCEEECTTSCEEEHHHHHHHHHHCS--BCTTTCSB
T ss_pred CCCCCeeCCccccC--CCcEEEeCCCCHHHHHHHHHHHHcCC--CCcCcCcc
Confidence 45679999999853 33567789999999999999997544 59999954
No 6
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.7e-10 Score=82.51 Aligned_cols=51 Identities=33% Similarity=0.774 Sum_probs=40.3
Q ss_pred cCCccccccccccccc--cCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 6 AAATLCSICWEEASET--CGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 6 ~~~~eCsICLE~~sds--~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
.+...|+||++.+.+. .+..++.++|+|.||..||..|+.. ...||+||+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~ 65 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKK 65 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCCc
Confidence 3567899999998643 1334577899999999999999974 4569999964
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.04 E-value=2.6e-10 Score=89.84 Aligned_cols=54 Identities=31% Similarity=0.661 Sum_probs=39.9
Q ss_pred CCccccccccccccccC-------------CceEEeCCCCcccHHHHHHHHhc---CCCCCCCCCceecc
Q 022899 7 AATLCSICWEEASETCG-------------RSIVRLQCSHLFHLDCIGSAFNV---TGIMQCPNCREVEN 60 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~-------------~~~~~L~CgH~FH~~CI~swl~~---k~s~~CPlCR~i~~ 60 (290)
.+++|+||++.|.+... ..+..++|+|.||..||..|+.. +...+||+||+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 35689999999864220 12336699999999999999953 34568999997643
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=1.1e-10 Score=86.00 Aligned_cols=49 Identities=29% Similarity=0.685 Sum_probs=39.7
Q ss_pred cCCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
.+..+|+||++.+.. +..+..++|+|.||..||..|+..+ ..||+||+.
T Consensus 21 ~~~~~C~IC~~~~~~--~~~~~~l~C~H~fh~~Ci~~w~~~~--~~CP~Cr~~ 69 (75)
T 1x4j_A 21 SEQTLCVVCMCDFES--RQLLRVLPCNHEFHAKCVDKWLKAN--RTCPICRAD 69 (75)
T ss_dssp SSCCEETTTTEECCB--TCEEEEETTTEEEETTHHHHHHHHC--SSCTTTCCC
T ss_pred CCCCCCeECCcccCC--CCeEEEECCCCHhHHHHHHHHHHcC--CcCcCcCCc
Confidence 356789999999864 3356778999999999999999744 469999964
No 9
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.03 E-value=1.2e-10 Score=80.54 Aligned_cols=48 Identities=29% Similarity=0.689 Sum_probs=38.5
Q ss_pred CCccccccccccccccCCceEEeC-CCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRLQ-CSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~-CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
++.+|+||++.+.+ +..+..++ |+|.||.+||.+|++. ..+||+||+.
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~ 52 (55)
T 1iym_A 4 DGVECAVCLAELED--GEEARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLT 52 (55)
T ss_dssp CSCCCTTTCCCCCT--TSCCEECSSSCCEECTTHHHHTTTT--CCSCSSSCCC
T ss_pred CCCcCccCCccccC--CCceEECCCCCCcccHHHHHHHHHc--CCcCcCCCCE
Confidence 45789999999864 33466675 9999999999999964 4569999954
No 10
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.8e-10 Score=87.15 Aligned_cols=50 Identities=24% Similarity=0.591 Sum_probs=37.9
Q ss_pred CCccccccccccccc---------cCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASET---------CGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds---------~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
++++|+||++.+.+. .+..+..+ +|+|.||.+||.+|+..+ .+||+||+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~ 73 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--NRCPLCQQD 73 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--CBCTTTCCB
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--CCCCCcCCC
Confidence 467799999998642 23334444 799999999999999744 479999964
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.02 E-value=2.1e-10 Score=82.81 Aligned_cols=51 Identities=33% Similarity=0.783 Sum_probs=40.6
Q ss_pred cCCccccccccccccc--cCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 6 AAATLCSICWEEASET--CGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 6 ~~~~eCsICLE~~sds--~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
.+..+|+||++.+.+. .+..++.++|+|.||..||..|+..+ ..||+||+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~ 60 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKK 60 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--SBCTTTCCB
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--CCCCCCCCc
Confidence 4567899999998652 23445778999999999999999744 469999965
No 12
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.00 E-value=2.3e-10 Score=87.98 Aligned_cols=48 Identities=31% Similarity=0.688 Sum_probs=39.0
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
....|+||++.+.. +..+..++|+|.||..||..|+.. ..+||+||..
T Consensus 39 ~~~~C~IC~~~~~~--~~~~~~l~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~ 86 (91)
T 2l0b_A 39 QEMCCPICCSEYVK--GDVATELPCHHYFHKPCVSIWLQK--SGTCPVCRCM 86 (91)
T ss_dssp SCSEETTTTEECCT--TCEEEEETTTEEEEHHHHHHHHTT--TCBCTTTCCB
T ss_pred CCCCCcccChhhcC--CCcEEecCCCChHHHHHHHHHHHc--CCcCcCcCcc
Confidence 45679999999864 335677899999999999999963 4479999964
No 13
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=3.1e-10 Score=81.70 Aligned_cols=48 Identities=19% Similarity=0.469 Sum_probs=39.3
Q ss_pred cCCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
.+...|+||++.+.+ ++.++|+|.||..||..|+. ++...||+||+..
T Consensus 13 ~~~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS-----PKQTECGHRFCESCMAALLS-SSSPKCTACQESI 60 (66)
T ss_dssp CCCEECTTTCCEESS-----CCCCSSSCCCCHHHHHHHHT-TSSCCCTTTCCCC
T ss_pred CcCCCCCCCChHhcC-----eeECCCCCHHHHHHHHHHHH-hCcCCCCCCCcCC
Confidence 356789999999874 45579999999999999995 4556799999653
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.97 E-value=3.7e-10 Score=79.58 Aligned_cols=50 Identities=36% Similarity=0.786 Sum_probs=39.9
Q ss_pred CCccccccccccccc--cCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASET--CGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds--~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
+..+|+||++.+.+. .+..+..++|+|.||..||..|+.. ...||+||+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~ 53 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKK 53 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCB
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCcc
Confidence 357899999998643 2344577899999999999999974 4469999964
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.96 E-value=4.8e-10 Score=80.64 Aligned_cols=47 Identities=32% Similarity=0.624 Sum_probs=38.5
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
.+..|+||++.+.+ .+..++|+|.||..||..|+..+ ..||+||+..
T Consensus 4 ~~~~C~IC~~~~~~----~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~ 50 (68)
T 1chc_A 4 VAERCPICLEDPSN----YSMALPCLHAFCYVCITRWIRQN--PTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCCCS----CEEETTTTEEESTTHHHHHHHHS--CSTTTTCCCC
T ss_pred CCCCCeeCCccccC----CcEecCCCCeeHHHHHHHHHhCc--CcCcCCChhh
Confidence 35789999999864 34677999999999999999744 5699999653
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=6.8e-10 Score=81.33 Aligned_cols=47 Identities=32% Similarity=0.639 Sum_probs=38.4
Q ss_pred CCccccccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 7 AATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
....|+||++.+.+ ++.+ +|+|.||..||..|+.. ...||+||+...
T Consensus 14 ~~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 61 (72)
T 2djb_A 14 PYILCSICKGYLID-----ATTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVH 61 (72)
T ss_dssp GGGSCTTTSSCCSS-----CEECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCCCChHHHC-----cCEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccC
Confidence 45679999999874 5565 99999999999999974 456999996533
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=5.7e-10 Score=81.08 Aligned_cols=48 Identities=29% Similarity=0.749 Sum_probs=39.5
Q ss_pred cCCccccccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCCCCCCCcee
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNV-TGIMQCPNCREV 58 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~-k~s~~CPlCR~i 58 (290)
.....|+||++.+.+ ++.++|+|.||..||..|+.. .+...||+||+.
T Consensus 18 ~~~~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 18 QEEVICPICLDILQK-----PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTS 66 (73)
T ss_dssp CCCCBCTTTCSBCSS-----EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCC
T ss_pred ccCCEeccCCcccCC-----eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCc
Confidence 346789999999874 677899999999999999962 345679999964
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=8.4e-10 Score=82.51 Aligned_cols=52 Identities=23% Similarity=0.538 Sum_probs=41.2
Q ss_pred cCCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCCCCCCCcee
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVT-GIMQCPNCREV 58 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k-~s~~CPlCR~i 58 (290)
.+..+|+||++.+.+. ...++.++|+|.||..||..|+..+ +...||+||+.
T Consensus 13 ~~~~~C~IC~~~~~~~-~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 13 REVLECPICMESFTEE-QLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKI 65 (88)
T ss_dssp CSCCBCTTTCCBCCTT-SSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCC
T ss_pred cCCCCCccCCcccccc-CCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCc
Confidence 3467899999998742 3337778999999999999999743 34679999965
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=4.2e-10 Score=82.24 Aligned_cols=47 Identities=28% Similarity=0.574 Sum_probs=39.0
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
+...|+||++.+.+ ++.++|+|.||..||..|+.. ...||+||+...
T Consensus 14 ~~~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTCVH-----PVSLPCKHVFCYLCVKGASWL--GKRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBCSS-----EEEETTTEEEEHHHHHHCTTC--SSBCSSSCCBCC
T ss_pred CCCCCccCCcccCC-----CEEccCCCHHHHHHHHHHHHC--CCcCcCcCchhC
Confidence 46789999999874 677899999999999999963 367999996533
No 20
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1.1e-09 Score=77.99 Aligned_cols=45 Identities=31% Similarity=0.786 Sum_probs=37.5
Q ss_pred cCCccccccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCCCCCCC
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNV-TGIMQCPNC 55 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~-k~s~~CPlC 55 (290)
.....|+||++.+.+ ++.++|+|.||..||..|++. ++...||+|
T Consensus 18 ~~~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK-----PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS-----CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC-----eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 346789999999874 677899999999999999963 345679998
No 21
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.91 E-value=1.3e-09 Score=80.35 Aligned_cols=48 Identities=33% Similarity=0.656 Sum_probs=39.8
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCCCCCCCceec
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVT----GIMQCPNCREVE 59 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k----~s~~CPlCR~i~ 59 (290)
+...|+||++.+.+ ++.++|+|.||..||..|+... +...||+||...
T Consensus 18 ~~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 18 EEVTCPICLELLKE-----PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp TTTSCTTTCSCCSS-----CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred cCCCCcCCChhhCc-----ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 46689999999874 5678999999999999999752 367899999653
No 22
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.90 E-value=9.1e-10 Score=83.68 Aligned_cols=47 Identities=26% Similarity=0.627 Sum_probs=40.3
Q ss_pred CCccccccccccccccCCceEEeC-CCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRLQ-CSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~-CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
+...|+||++.+.+ ++.++ |||.||..||..|+...+...||+||+.
T Consensus 12 ~~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~ 59 (92)
T 3ztg_A 12 DELLCLICKDIMTD-----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 59 (92)
T ss_dssp TTTEETTTTEECSS-----CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCS
T ss_pred cCCCCCCCChhhcC-----ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCc
Confidence 45679999999874 67888 9999999999999975666789999964
No 23
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1.1e-09 Score=76.01 Aligned_cols=45 Identities=31% Similarity=0.649 Sum_probs=37.1
Q ss_pred cCCccccccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCCCCCCC
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNV-TGIMQCPNC 55 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~-k~s~~CPlC 55 (290)
.+...|+||++.+.+ ++.++|+|.||..||..|+.. ++...||+|
T Consensus 13 ~~~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE-----PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS-----CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc-----cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 356789999999874 456899999999999999753 456789998
No 24
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.89 E-value=1.1e-09 Score=88.06 Aligned_cols=50 Identities=22% Similarity=0.466 Sum_probs=39.3
Q ss_pred CCccccccccccccc-------------cCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASET-------------CGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds-------------~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
.++.|+||++.|.+. ++..+..++|+|.||..||..|+.. ..+||+||+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~ 98 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNRE 98 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSCSB
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCCCCc
Confidence 467899999998643 1224566799999999999999963 5679999964
No 25
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=1.3e-09 Score=80.50 Aligned_cols=49 Identities=29% Similarity=0.638 Sum_probs=40.0
Q ss_pred cCCccccccccccccccCCceEEeCCCCcccHHHHHHHHhc----CCCCCCCCCceec
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNV----TGIMQCPNCREVE 59 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~----k~s~~CPlCR~i~ 59 (290)
.+...|+||++.+.+ ++.++|+|.||..||..|+.. .+...||+||+..
T Consensus 17 ~~~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ-----PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCCCCTTTCSCCSS-----CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS
T ss_pred cCCCCCCCCCcccCC-----ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc
Confidence 346789999999874 566799999999999999964 3467899999653
No 26
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.88 E-value=6.1e-10 Score=81.91 Aligned_cols=49 Identities=29% Similarity=0.565 Sum_probs=39.7
Q ss_pred cCCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcC-----CCCCCCCCceec
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVT-----GIMQCPNCREVE 59 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k-----~s~~CPlCR~i~ 59 (290)
.+...|+||++.+.+ ++.++|+|.||..||..|+... +...||+||...
T Consensus 10 ~~~~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 10 QEEVTCPICLELLTE-----PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCCCEETTTTEECSS-----CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred ccCCCCcCCCcccCC-----eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 356789999999874 5568999999999999999642 266899999653
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.87 E-value=1.9e-09 Score=79.53 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=39.8
Q ss_pred cCCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
.+...|+||++.+.+ ++.++|||.||..||..|+. ++...||+||+.
T Consensus 6 ~~~~~C~IC~~~~~~-----Pv~~~CgH~fc~~Ci~~~~~-~~~~~CP~C~~~ 52 (78)
T 1t1h_A 6 PEYFRCPISLELMKD-----PVIVSTGQTYERSSIQKWLD-AGHKTCPKSQET 52 (78)
T ss_dssp SSSSSCTTTSCCCSS-----EEEETTTEEEEHHHHHHHHT-TTCCBCTTTCCB
T ss_pred cccCCCCCccccccC-----CEEcCCCCeecHHHHHHHHH-HCcCCCCCCcCC
Confidence 356789999999975 77789999999999999996 346779999965
No 28
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=2.1e-09 Score=80.21 Aligned_cols=46 Identities=24% Similarity=0.480 Sum_probs=38.4
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
....|+||++.+.+ ++.++|+|.||..||..|+.. ...||+||+..
T Consensus 14 ~~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~ 59 (81)
T 2csy_A 14 IPFRCFICRQAFQN-----PVVTKCRHYFCESCALEHFRA--TPRCYICDQPT 59 (81)
T ss_dssp CCSBCSSSCSBCCS-----EEECTTSCEEEHHHHHHHHHH--CSBCSSSCCBC
T ss_pred CCCCCcCCCchhcC-----eeEccCCCHhHHHHHHHHHHC--CCcCCCcCccc
Confidence 35679999999974 667899999999999999974 45699999653
No 29
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=9.7e-10 Score=79.60 Aligned_cols=45 Identities=29% Similarity=0.655 Sum_probs=37.9
Q ss_pred cCCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
.+...|+||++.+.+ +.++|+|.||..||..|+. ....||+||+.
T Consensus 13 ~~~~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~ 57 (70)
T 2ecn_A 13 TDEEECCICMDGRAD------LILPCAHSFCQKCIDKWSD--RHRNCPICRLQ 57 (70)
T ss_dssp CCCCCCSSSCCSCCS------EEETTTEEECHHHHHHSSC--CCSSCHHHHHC
T ss_pred CCCCCCeeCCcCccC------cccCCCCcccHHHHHHHHH--CcCcCCCcCCc
Confidence 456789999999862 6789999999999999986 55679999954
No 30
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.82 E-value=2.1e-09 Score=88.30 Aligned_cols=44 Identities=36% Similarity=0.666 Sum_probs=37.3
Q ss_pred ccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 9 TLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
..|+||++.+.+ ++.++|||.||..||..|+. ....||+||+..
T Consensus 54 ~~C~iC~~~~~~-----~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 54 LQCIICSEYFIE-----AVTLNCAHSFCSYCINEWMK--RKIECPICRKDI 97 (138)
T ss_dssp SBCTTTCSBCSS-----EEEETTSCEEEHHHHHHHTT--TCSBCTTTCCBC
T ss_pred CCCcccCcccCC-----ceECCCCCCccHHHHHHHHH--cCCcCCCCCCcC
Confidence 469999999974 67889999999999999996 345699999653
No 31
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.9e-09 Score=81.65 Aligned_cols=51 Identities=20% Similarity=0.490 Sum_probs=40.0
Q ss_pred cCCccccccccccccccCCceEEeCCC-----CcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQCS-----HLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~Cg-----H~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
.+...|.||++.+.++ . ...++|. |.||.+||.+|+..++..+||+||...
T Consensus 13 ~~~~~C~IC~~~~~~~--~-~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 13 SSQDICRICHCEGDDE--S-PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp TTSCCCSSSCCCCCSS--S-CEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CCCCCCeEcCccccCC--C-eeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 3567899999988632 2 3357896 999999999999866667899999653
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.81 E-value=2.7e-09 Score=83.32 Aligned_cols=46 Identities=30% Similarity=0.593 Sum_probs=38.3
Q ss_pred CccccccccccccccCCceEE-eCCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 8 ATLCSICWEEASETCGRSIVR-LQCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~-L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
...|+||++.+.+ ++. ++|||.||..||..|+..++ ..||+||...
T Consensus 22 ~~~C~IC~~~~~~-----p~~~~~CgH~FC~~Ci~~~~~~~~-~~CP~Cr~~~ 68 (100)
T 3lrq_A 22 VFRCFICMEKLRD-----ARLCPHCSKLCCFSCIRRWLTEQR-AQCPHCRAPL 68 (100)
T ss_dssp HTBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHHHTC-SBCTTTCCBC
T ss_pred CCCCccCCccccC-----ccccCCCCChhhHHHHHHHHHHCc-CCCCCCCCcC
Confidence 4679999999974 667 89999999999999997442 5799999653
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.81 E-value=4e-09 Score=75.62 Aligned_cols=50 Identities=20% Similarity=0.436 Sum_probs=38.0
Q ss_pred Ccccccccc-ccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 8 ATLCSICWE-EASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 8 ~~eCsICLE-~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
+..|+||++ .+.+ .....+.++|||.||..||.+|+. ++...||+||+..
T Consensus 3 ~~~C~IC~~~~~~~-~~~~~~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~ 53 (65)
T 1g25_A 3 DQGCPRCKTTKYRN-PSLKLMVNVCGHTLCESCVDLLFV-RGAGNCPECGTPL 53 (65)
T ss_dssp TTCCSTTTTHHHHC-SSCCEEECTTCCCEEHHHHHHHHH-TTSSSCTTTCCCC
T ss_pred CCcCCcCCCCccCC-CccCeecCCCCCHhHHHHHHHHHH-cCCCcCCCCCCcc
Confidence 567999999 6653 122235679999999999999986 3456799999653
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.79 E-value=5.6e-09 Score=82.56 Aligned_cols=52 Identities=33% Similarity=0.742 Sum_probs=41.1
Q ss_pred cCCccccccccccccc--cCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 6 AAATLCSICWEEASET--CGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 6 ~~~~eCsICLE~~sds--~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
.+..+|+||++.+.+. +++.++.++|||.||..||..|+.. ...||+||+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~ 58 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKI 58 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT--CSBCTTTCCBC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh--CCCCCCCCCcC
Confidence 3567899999998752 2344578899999999999999963 34799999653
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.77 E-value=4.5e-09 Score=84.35 Aligned_cols=46 Identities=26% Similarity=0.580 Sum_probs=38.6
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
...|+||++.+.+ ++.++|||.||..||..|+. .+...||+||+..
T Consensus 52 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 52 TFQCICCQELVFR-----PITTVCQHNVCKDCLDRSFR-AQVFSCPACRYDL 97 (124)
T ss_dssp HTBCTTTSSBCSS-----EEECTTSCEEEHHHHHHHHH-TTCCBCTTTCCBC
T ss_pred CCCCCcCChHHcC-----cEEeeCCCcccHHHHHHHHh-HCcCCCCCCCccC
Confidence 4569999999974 77789999999999999997 3445799999653
No 36
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.76 E-value=9.8e-10 Score=90.25 Aligned_cols=50 Identities=22% Similarity=0.466 Sum_probs=0.9
Q ss_pred CCccccccccccccc-------------cCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASET-------------CGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds-------------~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
.++.|+||++.|.+. ++..++.++|+|.||..||..|+.. ..+||+||+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~ 109 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNRE 109 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCCe
Confidence 357899999998642 1223445699999999999999964 4569999964
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.70 E-value=1e-08 Score=80.43 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=38.0
Q ss_pred CCccccccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
....|+||++.+.+ ++.+ +|||.||..||..|+.. ...||+||..
T Consensus 14 ~~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~ 59 (108)
T 2ckl_A 14 PHLMCVLCGGYFID-----ATTIIECLHSFCKTCIVRYLET--SKYCPICDVQ 59 (108)
T ss_dssp GGTBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHTS--CSBCTTTCCB
T ss_pred CcCCCccCChHHhC-----cCEeCCCCChhhHHHHHHHHHh--CCcCcCCCcc
Confidence 46789999999974 6666 99999999999999964 3679999965
No 38
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.70 E-value=1.1e-08 Score=78.95 Aligned_cols=45 Identities=31% Similarity=0.597 Sum_probs=37.2
Q ss_pred CccccccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 8 ATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
...|+||++.+.+ ++.+ +|||.||..||..|+.. ...||+||...
T Consensus 22 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~ 67 (99)
T 2y43_A 22 LLRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFLSY--KTQCPTCCVTV 67 (99)
T ss_dssp HTBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBC
T ss_pred CCCcccCChhhCC-----cCEECCCCCHhhHHHHHHHHHC--CCCCCCCCCcC
Confidence 4579999999974 5666 89999999999999963 45799999653
No 39
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.69 E-value=2.5e-09 Score=84.65 Aligned_cols=45 Identities=33% Similarity=0.675 Sum_probs=38.2
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
+..|+||++.+.+ ++.++|+|.||..||..|+. ++...||+||..
T Consensus 15 ~~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~ 59 (115)
T 3l11_A 15 ECQCGICMEILVE-----PVTLPCNHTLCKPCFQSTVE-KASLCCPFCRRR 59 (115)
T ss_dssp HHBCTTTCSBCSS-----CEECTTSCEECHHHHCCCCC-TTTSBCTTTCCB
T ss_pred CCCCccCCcccCc-----eeEcCCCCHHhHHHHHHHHh-HCcCCCCCCCcc
Confidence 4579999999874 77789999999999999995 345679999965
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.67 E-value=1.3e-08 Score=85.45 Aligned_cols=46 Identities=33% Similarity=0.780 Sum_probs=37.8
Q ss_pred CccccccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 8 ATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
...|+||++.+.+ ++.+ +|+|.||..||..|+. .+...||+||...
T Consensus 54 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 54 ELMCPICLDMLKN-----TMTTKECLHRFCADCIITALR-SGNKECPTCRKKL 100 (165)
T ss_dssp HHBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHH-TTCCBCTTTCCBC
T ss_pred CCCCcccChHhhC-----cCEeCCCCChhHHHHHHHHHH-hCcCCCCCCCCcC
Confidence 3479999999975 5565 9999999999999997 3456799999653
No 41
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.67 E-value=1e-08 Score=81.91 Aligned_cols=47 Identities=30% Similarity=0.571 Sum_probs=38.4
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
+...|+||++.+.+ ++.++|+|.||..||..|+..++ ..||+||...
T Consensus 17 ~~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~ 63 (118)
T 3hct_A 17 SKYECPICLMALRE-----AVQTPCGHRFCKACIIKSIRDAG-HKCPVDNEIL 63 (118)
T ss_dssp GGGBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHHC-SBCTTTCCBC
T ss_pred CCCCCCcCChhhcC-----eEECCcCChhhHHHHHHHHhhCC-CCCCCCCCCc
Confidence 45689999999874 67789999999999999996333 3799999653
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.66 E-value=1.3e-08 Score=79.29 Aligned_cols=46 Identities=35% Similarity=0.672 Sum_probs=37.8
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCCCCCCCcee
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVT-GIMQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k-~s~~CPlCR~i 58 (290)
...|+||++.+.+ ++.++|||.||..||..|+..+ +...||+||..
T Consensus 21 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 67 (112)
T 1jm7_A 21 ILECPICLELIKE-----PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKND 67 (112)
T ss_dssp HTSCSSSCCCCSS-----CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCC
T ss_pred CCCCcccChhhcC-----eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCc
Confidence 4579999999874 5567999999999999999743 34579999964
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.65 E-value=1.7e-08 Score=84.82 Aligned_cols=45 Identities=29% Similarity=0.694 Sum_probs=38.1
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
...|+||++.+.+ ++.++|+|.||..||..|+. .+...||+||..
T Consensus 78 ~~~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~ 122 (150)
T 1z6u_A 78 SFMCVCCQELVYQ-----PVTTECFHNVCKDCLQRSFK-AQVFSCPACRHD 122 (150)
T ss_dssp HTBCTTTSSBCSS-----EEECTTSCEEEHHHHHHHHH-TTCCBCTTTCCB
T ss_pred CCEeecCChhhcC-----CEEcCCCCchhHHHHHHHHH-hCCCcCCCCCcc
Confidence 4579999999874 67789999999999999997 344579999965
No 44
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.64 E-value=2.9e-08 Score=75.54 Aligned_cols=52 Identities=17% Similarity=0.308 Sum_probs=37.4
Q ss_pred cCCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
.+..+|+||++.++.. ......++|||.||..||..++. ++...||+||+..
T Consensus 9 ~~~~~CpICle~~~~~-d~~~~p~~CGH~fC~~Cl~~~~~-~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 9 EDPVECPLCMEPLEID-DINFFPCTCGYQICRFCWHRIRT-DENGLCPACRKPY 60 (78)
T ss_dssp CCCCBCTTTCCBCCTT-TTTCCSSTTSCCCCHHHHHHHTT-SSCSBCTTTCCBC
T ss_pred ccCCcCCccCccCccc-cccccccCCCCCcCHHHHHHHHh-cCCCCCCCCCCcc
Confidence 3467899999988521 11222235999999999999885 3456799999653
No 45
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=2.9e-08 Score=75.66 Aligned_cols=49 Identities=24% Similarity=0.603 Sum_probs=38.3
Q ss_pred cCCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
...++|+||++.+... ..-..|+|.||..||.+||+..+..+||+||+.
T Consensus 13 ~~i~~C~IC~~~i~~g----~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~ 61 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG----QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 61 (74)
T ss_dssp SSSCBCSSSCCBCSSS----EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSC
T ss_pred CCCCcCcchhhHcccC----CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCc
Confidence 3467899999998642 111289999999999999976655789999954
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.58 E-value=3.3e-08 Score=78.14 Aligned_cols=51 Identities=33% Similarity=0.758 Sum_probs=39.8
Q ss_pred CCccccccccccccc--cCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 7 AATLCSICWEEASET--CGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 7 ~~~eCsICLE~~sds--~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
+...|+||++.+.+. ....++.++|+|.||..||..|+..+ ..||+||+..
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~ 123 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKI 123 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC--SBCTTTCCBC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC--CCCCCCCCcC
Confidence 467799999998642 23345778999999999999999744 4699999643
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.55 E-value=4.3e-08 Score=77.63 Aligned_cols=46 Identities=33% Similarity=0.567 Sum_probs=38.2
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
...|+||++.+.+ ++.++|||.||..||..|+.. +...||+||...
T Consensus 23 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~ 68 (116)
T 1rmd_A 23 SISCQICEHILAD-----PVETSCKHLFCRICILRCLKV-MGSYCPSCRYPC 68 (116)
T ss_dssp HTBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHH-TCSBCTTTCCBC
T ss_pred CCCCCCCCcHhcC-----cEEcCCCCcccHHHHHHHHhH-CcCcCCCCCCCC
Confidence 4579999999874 677899999999999999974 245699999653
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.51 E-value=1e-07 Score=72.94 Aligned_cols=46 Identities=13% Similarity=-0.025 Sum_probs=39.4
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
....|+||++.+++ ++.++|||.||..||..|+.. ..+||.||...
T Consensus 13 ~~~~CpI~~~~m~d-----PV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l 58 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD-----PVRLPSGTVMDRSIILRHLLN--SPTDPFNRQML 58 (85)
T ss_dssp TTTBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBC
T ss_pred hheECcccCchhcC-----CeECCCCCEECHHHHHHHHhc--CCCCCCCcCCC
Confidence 45779999999986 888899999999999999973 45699999653
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.50 E-value=2.4e-08 Score=83.29 Aligned_cols=45 Identities=29% Similarity=0.623 Sum_probs=38.0
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
+...|+||++.+.+ ++.++|||.||..||..|+. .+...||+||.
T Consensus 30 ~~~~C~IC~~~~~~-----pv~~~CgH~FC~~Ci~~~~~-~~~~~CP~Cr~ 74 (141)
T 3knv_A 30 AKYLCSACRNVLRR-----PFQAQCGHRYCSFCLASILS-SGPQNCAACVH 74 (141)
T ss_dssp GGGBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHGG-GSCEECHHHHH
T ss_pred cCcCCCCCChhhcC-----cEECCCCCccCHHHHHHHHh-cCCCCCCCCCC
Confidence 45679999999975 67789999999999999996 34457999995
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.45 E-value=1.1e-07 Score=83.71 Aligned_cols=47 Identities=15% Similarity=0.034 Sum_probs=39.2
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceec
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
....|+||++.+.+ ++.++|||+||..||..|+..++ ..||+||...
T Consensus 207 ~~~~c~i~~~~~~d-----Pv~~~~gh~f~~~~i~~~~~~~~-~~cP~~~~~~ 253 (281)
T 2c2l_A 207 DYLCGKISFELMRE-----PCITPSGITYDRKDIEEHLQRVG-HFNPVTRSPL 253 (281)
T ss_dssp STTBCTTTCSBCSS-----EEECSSCCEEETTHHHHHHHHTC-SSCTTTCCCC
T ss_pred cccCCcCcCCHhcC-----CeECCCCCEECHHHHHHHHHHCC-CCCcCCCCCC
Confidence 45679999999985 88899999999999999997433 3499999653
No 51
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.44 E-value=1.6e-07 Score=74.32 Aligned_cols=45 Identities=13% Similarity=0.010 Sum_probs=38.9
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
....|+||++.+.+ ++.++|||.||..||..|+. +..+||.||..
T Consensus 28 ~~~~CpI~~~~m~d-----PV~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~ 72 (100)
T 2kre_A 28 DEFRDPLMDTLMTD-----PVRLPSGTIMDRSIILRHLL--NSPTDPFNRQT 72 (100)
T ss_dssp TTTBCTTTCSBCSS-----EEEETTTEEEEHHHHHHHTT--SCSBCSSSCCB
T ss_pred HhhCCcCccCcccC-----CeECCCCCEEchHHHHHHHH--cCCCCCCCCCC
Confidence 35679999999986 88889999999999999996 34679999965
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.43 E-value=2e-07 Score=73.50 Aligned_cols=45 Identities=18% Similarity=-0.020 Sum_probs=38.9
Q ss_pred CCccccccccccccccCCceEEeCCC-CcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCS-HLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~Cg-H~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
....|+||++.+++ ++.++|| |.||..||..|+.. ..+||+||..
T Consensus 21 ~~~~CpI~~~~m~d-----PV~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~ 66 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD-----PVVLPSSRVTVDRSTIARHLLS--DQTDPFNRSP 66 (98)
T ss_dssp TTTBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHTTT--SCBCTTTCSB
T ss_pred HhcCCcCccccccC-----CeECCCCCeEECHHHHHHHHHh--CCCCCCCCCC
Confidence 45679999999986 8889999 99999999999963 4579999965
No 53
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.41 E-value=1.2e-07 Score=79.74 Aligned_cols=48 Identities=27% Similarity=0.461 Sum_probs=38.9
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
+...|+||++.+.+ ++.++|||.||..||..|+..+ ...||+||....
T Consensus 17 ~~~~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 17 SKYECPICLMALRE-----AVQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILL 64 (170)
T ss_dssp GGGBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCC
T ss_pred CCCCCCCCChhhcC-----cEECCCCCHHHHHHHHHHHHhC-CCCCCCCccCcc
Confidence 45689999999974 6778999999999999999633 237999996533
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.39 E-value=6e-08 Score=77.33 Aligned_cols=42 Identities=31% Similarity=0.662 Sum_probs=36.1
Q ss_pred CccccccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 8 ATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
...|+||++.+.+ ++.+ +|||.||..||..|+. ..||+||..
T Consensus 22 ~~~C~IC~~~~~~-----pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~ 64 (117)
T 1jm7_B 22 LLRCSRCTNILRE-----PVCLGGCEHIFCSNCVSDCIG----TGCPVCYTP 64 (117)
T ss_dssp TTSCSSSCSCCSS-----CBCCCSSSCCBCTTTGGGGTT----TBCSSSCCB
T ss_pred CCCCCCCChHhhC-----ccEeCCCCCHHHHHHHHHHhc----CCCcCCCCc
Confidence 4679999999974 6677 9999999999999985 569999965
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.39 E-value=4.4e-08 Score=69.13 Aligned_cols=43 Identities=30% Similarity=0.537 Sum_probs=35.2
Q ss_pred cCCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
.+...|+||++.+.+ ++.++|+|.||..||..| ...||+||+.
T Consensus 4 ~~~~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~-----~~~CP~Cr~~ 46 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC-----PKLLPCLHTLCSGCLEAS-----GMQCPICQAP 46 (56)
T ss_dssp CCCSSCSSSCSSCBC-----CSCSTTSCCSBTTTCSSS-----SSSCSSCCSS
T ss_pred ccCCCceEeCCccCC-----eEEcCCCCcccHHHHccC-----CCCCCcCCcE
Confidence 456789999999874 677899999999998863 4569999964
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.37 E-value=1e-07 Score=70.80 Aligned_cols=41 Identities=34% Similarity=0.740 Sum_probs=34.6
Q ss_pred CccccccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCCCCCCCceec
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHL-FHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~-FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
...|.||++.+.+ ++.++|+|. ||..|+..| ..||+||+..
T Consensus 24 ~~~C~iC~~~~~~-----~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i 65 (74)
T 4ic3_A 24 EKLCKICMDRNIA-----IVFVPCGHLVTCKQCAEAV------DKCPMCYTVI 65 (74)
T ss_dssp HTBCTTTSSSBCC-----EEEETTCCBCCCHHHHTTC------SBCTTTCCBC
T ss_pred CCCCCCCCCCCCC-----EEEcCCCChhHHHHhhhcC------ccCCCcCcCc
Confidence 4679999999874 777899999 999999987 4599999653
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.36 E-value=1.9e-07 Score=67.73 Aligned_cols=48 Identities=19% Similarity=0.407 Sum_probs=37.4
Q ss_pred ccCCccccccccccccccCCceEEe--CCCCc-ccHHHHHHHHhcCCCCCCCCCceec
Q 022899 5 AAAATLCSICWEEASETCGRSIVRL--QCSHL-FHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 5 ~~~~~eCsICLE~~sds~~~~~~~L--~CgH~-FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
......|.||++...+ ...+ +|||. ||..|+..|.+.+ ..||+||+..
T Consensus 4 ~~~~~~C~IC~~~~~~-----~~~~~~pCgH~~~C~~C~~~~~~~~--~~CPiCR~~i 54 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRD-----GNIIHGRTGHLVTCFHCARRLKKAG--ASCPICKKEI 54 (63)
T ss_dssp GGGGSBCTTTSSSBSC-----EEEEETTEEEEEECHHHHHHHHHTT--CBCTTTCCBC
T ss_pred CCcCCCCcccCCcCCC-----eEEEecCCCCHhHHHHHHHHHHHhC--CcCCCcCchh
Confidence 3456789999998764 3444 99998 9999999998633 5699999643
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=3.4e-07 Score=70.98 Aligned_cols=47 Identities=26% Similarity=0.481 Sum_probs=38.6
Q ss_pred CCccccccccccccccCCceEEe-CCCCcccHHHHHHHHhcC----CCCCCCC--Ccee
Q 022899 7 AATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVT----GIMQCPN--CREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k----~s~~CPl--CR~i 58 (290)
....|+||++.|.+ ++.+ .|||.||..||..||... +...||+ |++.
T Consensus 6 ~~~~CPI~~~~~~d-----PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKK-----PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSS-----EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcC-----CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45679999999985 7888 599999999999999632 3567999 9743
No 59
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.36 E-value=1.7e-07 Score=68.10 Aligned_cols=46 Identities=24% Similarity=0.421 Sum_probs=36.6
Q ss_pred CCccccccccccccccCCceEEe--CCCCc-ccHHHHHHHHhcCCCCCCCCCceec
Q 022899 7 AATLCSICWEEASETCGRSIVRL--QCSHL-FHLDCIGSAFNVTGIMQCPNCREVE 59 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L--~CgH~-FH~~CI~swl~~k~s~~CPlCR~i~ 59 (290)
++.+|.||++...+ .+.+ +|||. ||.+|+..|++. ...||+||+..
T Consensus 7 ~~~~C~IC~~~~~~-----~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i 55 (64)
T 2vje_A 7 AIEPCVICQGRPKN-----GCIVHGKTGHLMACFTCAKKLKKR--NKPCPVCRQPI 55 (64)
T ss_dssp GGSCCTTTSSSCSC-----EEEEETTEEEEEECHHHHHHHHHT--TCCCTTTCCCC
T ss_pred CcCCCCcCCCCCCC-----EEEECCCCCChhhHHHHHHHHHHc--CCcCCCcCcch
Confidence 45689999998764 4544 99999 899999999863 34699999643
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.35 E-value=2.1e-07 Score=90.07 Aligned_cols=47 Identities=30% Similarity=0.545 Sum_probs=38.6
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
...|+||++.+.+ ++.++|||.||..||..|+.. ....||+||+...
T Consensus 332 ~~~C~ICle~~~~-----pv~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 332 FQLCKICAENDKD-----VKIEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIK 378 (389)
T ss_dssp SSBCTTTSSSBCC-----EEEETTCCEECHHHHHHHHHH-TCSBCTTTCCBCC
T ss_pred CCCCCccCcCCCC-----eEEeCCCChhhHHHHHHHHhc-CCCCCCCCCCccC
Confidence 3689999999874 778899999999999999962 4457999996533
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=8.9e-07 Score=65.56 Aligned_cols=42 Identities=33% Similarity=0.726 Sum_probs=33.5
Q ss_pred CccccccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHL-FHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~-FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
...|.||++.+.+ ++.++|+|. ||..|+... ..||+||+...
T Consensus 25 ~~~C~IC~~~~~~-----~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~ 67 (75)
T 2ecg_A 25 EKLCKICMDRNIA-----IVFVPCGHLVTCKQCAEAV------DKCPMCYTVIT 67 (75)
T ss_dssp HHSCSSSCSSCCC-----BCCSSSCCCCBCHHHHHHC------SBCTTTCCBCC
T ss_pred CCCCCcCCCCCCC-----EEEecCCCHHHHHHHhhCC------CCCccCCceec
Confidence 4579999999874 667899999 999999753 45999996533
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.16 E-value=1.4e-06 Score=76.20 Aligned_cols=46 Identities=15% Similarity=0.039 Sum_probs=39.1
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
....|+||++.+.+ ++.++|||.||..||..|+...+. +||.|+..
T Consensus 105 ~~f~CPI~~elm~D-----PV~~~~Ghtfer~~I~~~l~~~~~-tcP~t~~~ 150 (179)
T 2f42_A 105 DYLCGKISFELMRE-----PCITPSGITYDRKDIEEHLQRVGH-FDPVTRSP 150 (179)
T ss_dssp GGGBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHHTCS-BCTTTCCB
T ss_pred HhhcccCccccCCC-----CeECCCCCEECHHHHHHHHHhCCC-CCCCCcCC
Confidence 45679999999985 888899999999999999975443 69999965
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.15 E-value=6.4e-07 Score=67.77 Aligned_cols=43 Identities=30% Similarity=0.605 Sum_probs=34.8
Q ss_pred CccccccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCCCCCCCceeccC
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHL-FHLDCIGSAFNVTGIMQCPNCREVENG 61 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~-FH~~CI~swl~~k~s~~CPlCR~i~~g 61 (290)
...|.||++...+ ++.++|||. ||..|+..|. .||+||.....
T Consensus 18 ~~~C~IC~~~~~~-----~v~~pCgH~~~C~~C~~~~~------~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN-----STFCPCGHTVCCESCAAQLQ------SCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC-----EEEETTCBCCBCHHHHTTCS------BCTTTCCBCCE
T ss_pred CCEeEEeCcccCc-----EEEECCCCHHHHHHHHHhcC------cCCCCCchhhC
Confidence 4579999998774 777899999 9999998763 59999955433
No 64
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.12 E-value=1.6e-06 Score=80.43 Aligned_cols=47 Identities=23% Similarity=0.475 Sum_probs=39.3
Q ss_pred CCccccccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCC--Ccee
Q 022899 7 AATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPN--CREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPl--CR~i 58 (290)
....|+||++.|.+ +++. .|||.||..||..|+...+...||+ ||+.
T Consensus 180 ~el~CPIcl~~f~D-----PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~ 229 (267)
T 3htk_C 180 IELTCPITCKPYEA-----PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQV 229 (267)
T ss_dssp CCSBCTTTSSBCSS-----EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCE
T ss_pred eeeECcCccCcccC-----CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCc
Confidence 45679999999986 6664 9999999999999997555678999 9954
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.09 E-value=1.1e-06 Score=67.42 Aligned_cols=50 Identities=22% Similarity=0.656 Sum_probs=37.3
Q ss_pred cCCccccccccccccccCCceEEe-CCCCcccHHHHHHHHhcC---C---CCCCCC--Ccee
Q 022899 6 AAATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVT---G---IMQCPN--CREV 58 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k---~---s~~CPl--CR~i 58 (290)
.+..+|+||++.+... ....+ +|+|.||.+||..++..+ + ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~---~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVE---QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGG---GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccc---cceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3567899999998641 23344 799999999999998632 2 357999 9854
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=1.8e-06 Score=63.72 Aligned_cols=43 Identities=28% Similarity=0.625 Sum_probs=34.4
Q ss_pred CCccccccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHL-FHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~-FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
+...|.||++...+ ++.++|+|. ||..|+... ..||+||+...
T Consensus 14 ~~~~C~IC~~~~~~-----~v~~pCgH~~~C~~C~~~~------~~CP~CR~~i~ 57 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN-----WVLLPCRHTCLCDGCVKYF------QQCPMCRQFVQ 57 (68)
T ss_dssp CSSCCSSSSSSCCC-----CEETTTTBCCSCTTHHHHC------SSCTTTCCCCC
T ss_pred CCCCCCCcCcCCCC-----EEEECCCChhhhHHHHhcC------CCCCCCCcchh
Confidence 46679999998763 777899999 999999842 45999996543
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.07 E-value=1.9e-06 Score=62.69 Aligned_cols=48 Identities=23% Similarity=0.475 Sum_probs=36.4
Q ss_pred cCCccccccccccccccCCceEEeCCC--C---cccHHHHHHHHhcCCCCCCCCCcee
Q 022899 6 AAATLCSICWEEASETCGRSIVRLQCS--H---LFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L~Cg--H---~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
.+...|.||++... + .. .++|. + .||..|+.+|+..++..+||+||..
T Consensus 4 ~~~~~CrIC~~~~~---~-~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~ 56 (60)
T 1vyx_A 4 EDVPVCWICNEELG---N-ER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56 (60)
T ss_dssp CSCCEETTTTEECS---C-CC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCB
T ss_pred CCCCEeEEeecCCC---C-ce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCe
Confidence 34678999998732 1 22 46654 4 8999999999986677889999964
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.95 E-value=1.7e-06 Score=83.45 Aligned_cols=52 Identities=23% Similarity=0.457 Sum_probs=37.3
Q ss_pred CCccccccccccccccCCceE---EeCCCCcccHHHHHHHHhcCCC---------CCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIV---RLQCSHLFHLDCIGSAFNVTGI---------MQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~---~L~CgH~FH~~CI~swl~~k~s---------~~CPlCR~i 58 (290)
+..+|+||++.+.+++..... ..+|+|.||..||..|+...+. ..||.||+.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~p 370 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCc
Confidence 566899999998753322211 2479999999999999963211 359999954
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.40 E-value=8.8e-05 Score=53.78 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=36.5
Q ss_pred ccccccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 9 TLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
..|+||++.+.+ ++.+ .|||.|...||..|+...+ .||+++..
T Consensus 4 ~~CpIs~~~m~d-----PV~~~~sG~~yer~~I~~~l~~~~--~cP~t~~~ 47 (61)
T 2bay_A 4 MLCAISGKVPRR-----PVLSPKSRTIFEKSLLEQYVKDTG--NDPITNEP 47 (61)
T ss_dssp CCCTTTCSCCSS-----EEEETTTTEEEEHHHHHHHHHHHS--BCTTTCCB
T ss_pred EEecCCCCCCCC-----CEEeCCCCcEEcHHHHHHHHHhCC--CCcCCcCC
Confidence 569999999985 6777 8999999999999997444 49999854
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.28 E-value=0.0002 Score=57.95 Aligned_cols=46 Identities=24% Similarity=0.486 Sum_probs=34.6
Q ss_pred cccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 10 LCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 10 eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
-|.+|--+++. ....++|+|.||.+|+..|.. ++..+||.|+....
T Consensus 3 fC~~C~~Pi~i----ygRmIPCkHvFCydCa~~~~~-~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV----YGRMIPCKHVFCYDCAILHEK-KGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE----EEEEETTCCEEEHHHHHHHHH-TTCCBCTTTCCBCS
T ss_pred ecCccCCCeEE----EeeeccccccHHHHHHHHHHh-ccCCCCcCcCCeee
Confidence 37788877764 233449999999999999875 45667999995533
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.93 E-value=0.00077 Score=60.84 Aligned_cols=46 Identities=26% Similarity=0.686 Sum_probs=36.7
Q ss_pred CCccccccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 7 AATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
....|.||.+.+..+ .+- .|++.||..|+..|+...+...||.|+.
T Consensus 179 ~i~~C~iC~~iv~~g-----~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~ 225 (238)
T 3nw0_A 179 AVKICNICHSLLIQG-----QSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 225 (238)
T ss_dssp TCCBCTTTCSBCSSC-----EECSSSCCEECHHHHHHHTTTCSSCBCTTTCC
T ss_pred CCCcCcchhhHHhCC-----cccCccChHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 367899999998631 222 4999999999999997666678999985
No 72
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=94.84 E-value=0.0062 Score=57.73 Aligned_cols=30 Identities=37% Similarity=0.808 Sum_probs=24.6
Q ss_pred ceEEeCCCCc-ccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 25 SIVRLQCSHL-FHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 25 ~~~~L~CgH~-FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
.++.++|||. ||..|+..| ..||+||....
T Consensus 307 ~~v~lpCgH~~fC~~C~~~~------~~CP~CR~~i~ 337 (345)
T 3t6p_A 307 SVVFIPCGHLVVCQECAPSL------RKCPICRGIIK 337 (345)
T ss_dssp CEEEETTCCEEECTTTGGGC------SBCTTTCCBCC
T ss_pred ceEEcCCCChhHhHHHHhcC------CcCCCCCCCcc
Confidence 4677899999 999999987 35999996543
No 73
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=90.60 E-value=0.55 Score=37.22 Aligned_cols=49 Identities=18% Similarity=0.445 Sum_probs=30.5
Q ss_pred Cccccccccccccc---cCCceEE-eCCCCcccHHHHHHH---H--hcCCCCCCCCCc
Q 022899 8 ATLCSICWEEASET---CGRSIVR-LQCSHLFHLDCIGSA---F--NVTGIMQCPNCR 56 (290)
Q Consensus 8 ~~eCsICLE~~sds---~~~~~~~-L~CgH~FH~~CI~sw---l--~~k~s~~CPlCR 56 (290)
...|.+|+..-..+ ....++. ..|+..||..|+... . ..++.-.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 45799999753111 1122333 389999999999531 1 124566799886
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=89.56 E-value=0.14 Score=39.00 Aligned_cols=33 Identities=15% Similarity=0.600 Sum_probs=24.8
Q ss_pred CCcccccccccc-ccccCCceEE-eCCCCcccHHHHHHH
Q 022899 7 AATLCSICWEEA-SETCGRSIVR-LQCSHLFHLDCIGSA 43 (290)
Q Consensus 7 ~~~eCsICLE~~-sds~~~~~~~-L~CgH~FH~~CI~sw 43 (290)
+...|.||++.+ .+ .+.. +.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~----av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQD----AVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCB----CCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCC----ceEECCcCChHHhHHHCHHH
Confidence 356799999863 32 2333 799999999999983
No 75
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=87.35 E-value=1.7 Score=34.48 Aligned_cols=53 Identities=17% Similarity=0.389 Sum_probs=37.2
Q ss_pred CCccccccccccc--cccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 7 AATLCSICWEEAS--ETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 7 ~~~eCsICLE~~s--ds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
....|.||-+.+. .++..-+.-..|+--.|..|..-=. +.++..||.|++..+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr-keG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER-REGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH-HTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH-hccCccccccCCccc
Confidence 3568999999863 2222222233789899999988544 478889999997644
No 76
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=86.83 E-value=0.31 Score=38.88 Aligned_cols=48 Identities=23% Similarity=0.507 Sum_probs=29.1
Q ss_pred ccccccccccccc----cCCceEE-eCCCCcccHHHHHHHHh-----cCCCCCCCCCc
Q 022899 9 TLCSICWEEASET----CGRSIVR-LQCSHLFHLDCIGSAFN-----VTGIMQCPNCR 56 (290)
Q Consensus 9 ~eCsICLE~~sds----~~~~~~~-L~CgH~FH~~CI~swl~-----~k~s~~CPlCR 56 (290)
..|.||++.-..+ .+...+. ..|+..||..|+..... .++.-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 5699999864211 1122233 37999999999875421 23455677774
No 77
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=83.29 E-value=0.85 Score=36.59 Aligned_cols=45 Identities=27% Similarity=0.743 Sum_probs=32.3
Q ss_pred CCccccccccccccccCCceEEeCC-CCcccHHHHHHHHhcCCCCCCCCCceecc
Q 022899 7 AATLCSICWEEASETCGRSIVRLQC-SHLFHLDCIGSAFNVTGIMQCPNCREVEN 60 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~C-gH~FH~~CI~swl~~k~s~~CPlCR~i~~ 60 (290)
|-.-|-.|+-..+. .+.| +|.+|+.|+...+.. +..||+|+....
T Consensus 27 G~~nCKsCWf~~k~-------LV~C~dHYLCl~CLtlmL~~--SdrCpIC~~pLP 72 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-------LVECNNHYLCLNCLTLLLSV--SNRCPICKMPLP 72 (99)
T ss_dssp CCCCCCSSCSCCSS-------EEECSSCEEEHHHHHHTCSS--SSEETTTTEECC
T ss_pred CcccChhhccccCC-------eeeecchhhHHHHHHHHHhh--ccCCcccCCcCC
Confidence 44568888876542 3345 899999999998864 445999985533
No 78
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=82.80 E-value=0.76 Score=36.00 Aligned_cols=47 Identities=21% Similarity=0.508 Sum_probs=28.7
Q ss_pred CCccccccccccccccCCceEE-eCCCCcccHHHHHHHHhc--CCCCCCCCCc
Q 022899 7 AATLCSICWEEASETCGRSIVR-LQCSHLFHLDCIGSAFNV--TGIMQCPNCR 56 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~-L~CgH~FH~~CI~swl~~--k~s~~CPlCR 56 (290)
.++.|.||.+.-.. ...+. -.|...||..|+...+.. .+.-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~---~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDL---LDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCT---TTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCC---cCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 46779999875221 11222 379999999998765421 2334566654
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=81.96 E-value=0.57 Score=34.38 Aligned_cols=47 Identities=21% Similarity=0.595 Sum_probs=30.7
Q ss_pred CccccccccccccccCCceEEe-CCCCcccHHHHHHHHhc--CCCCCCCCCce
Q 022899 8 ATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNV--TGIMQCPNCRE 57 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~--k~s~~CPlCR~ 57 (290)
...|.||..... +...+.- .|.-+||..|+..-... .+.-.||.|+.
T Consensus 18 ~~~C~~C~~~~~---~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 18 IWICPGCNKPDD---GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp EECBTTTTBCCS---SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CcCCCCCCCCCC---CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 345999987632 1222232 78999999999864432 14567999974
No 80
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=79.72 E-value=0.45 Score=35.42 Aligned_cols=56 Identities=25% Similarity=0.561 Sum_probs=34.9
Q ss_pred CCCcccCCccccccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 1 MVDEAAAATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 1 ~vD~~~~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
|+.....+..|.||.+.-+++.+ .+..- .|.-.||..|+..-...++.-.||.|+.
T Consensus 9 ~~~~~~~~~~C~vC~~~~s~~~~-~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 9 MQSLIDEDAVCSICMDGESQNSN-VILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp -CCCCCSSCSCSSSCCCCCCSSS-CEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred cccCCCCCCCCCCCCCCCCCCCC-CEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34455567889999875321111 22222 7999999999985433345566888863
No 81
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=75.69 E-value=0.5 Score=33.64 Aligned_cols=50 Identities=20% Similarity=0.467 Sum_probs=33.1
Q ss_pred cCCccccccccccccccCCceEEe-CCCCcccHHHHHHHHh---cCCCCCCCCCce
Q 022899 6 AAATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFN---VTGIMQCPNCRE 57 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~---~k~s~~CPlCR~ 57 (290)
.+...|.||...+.+ +...+.- .|..+||..|+..-.. ......||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~--~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAA--DEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCS--SSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCC--CCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 345679999987642 1223333 7899999999875332 124567999974
No 82
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=75.09 E-value=0.82 Score=39.80 Aligned_cols=56 Identities=18% Similarity=0.478 Sum_probs=35.1
Q ss_pred CccccccccccccccC-CceEEe-CCCCcccHHHHHHHHh----c-----CCCCCCCCCceeccCcc
Q 022899 8 ATLCSICWEEASETCG-RSIVRL-QCSHLFHLDCIGSAFN----V-----TGIMQCPNCREVENGVW 63 (290)
Q Consensus 8 ~~eCsICLE~~sds~~-~~~~~L-~CgH~FH~~CI~swl~----~-----k~s~~CPlCR~i~~g~~ 63 (290)
+..|+||...+.++.. ...+.- .|..+||..|...--. . .....||.|+......|
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~~~ 68 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAEW 68 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSCHH
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCHHH
Confidence 3569999998865321 223343 7999999999753210 0 01467999986544344
No 83
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.01 E-value=3.1 Score=30.91 Aligned_cols=48 Identities=25% Similarity=0.686 Sum_probs=30.5
Q ss_pred CccccccccccccccCCceEEe-CCCCcccHHHHHHHHh---cCCCCCCCCCcee
Q 022899 8 ATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFN---VTGIMQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~---~k~s~~CPlCR~i 58 (290)
...| ||.....+ ....+.- .|..+||..|+..-.. ......||.|+..
T Consensus 12 ~~~C-~C~~~~d~--~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 12 PVYC-LCRQPYNV--NHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCS-TTSCSCCS--SSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred ccEE-EcCCccCC--CCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 3446 89877532 1233333 7999999999874332 1256789999843
No 84
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=73.85 E-value=2.5 Score=30.93 Aligned_cols=46 Identities=24% Similarity=0.566 Sum_probs=31.6
Q ss_pred cCCccccccccccccccCCceEEe-CCCCcccHHHHHHHHhc--CCCCCCCCCce
Q 022899 6 AAATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNV--TGIMQCPNCRE 57 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~--k~s~~CPlCR~ 57 (290)
.....|.||.+. + .+..- .|...||..|+...+.. ++.-.|+.|+.
T Consensus 10 ~~~~~C~vC~~~-----~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 10 APGARCGVCGDG-----T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CTTCCCTTTSCC-----T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCCcCCCCCC-----C-eEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 345679999753 1 12222 79999999999877642 34457999974
No 85
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.47 E-value=1.9 Score=33.75 Aligned_cols=45 Identities=31% Similarity=0.852 Sum_probs=27.0
Q ss_pred CccccccccccccccCCceEEe-C--CC-CcccHHHHHHHHhcCCCCCCCCCce
Q 022899 8 ATLCSICWEEASETCGRSIVRL-Q--CS-HLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L-~--Cg-H~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
...| ||..... + .++.- . |. .+||..|+..--...+.-.||.|+.
T Consensus 36 ~~yC-iC~~~~~---g-~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~ 84 (91)
T 1weu_A 36 PTYC-LCHQVSY---G-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 84 (91)
T ss_dssp CBCS-TTCCBCC---S-CCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCC
T ss_pred CcEE-ECCCCCC---C-CEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccC
Confidence 3446 9987532 1 12111 4 55 6899999983222235667999974
No 86
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=63.10 E-value=2.6 Score=31.15 Aligned_cols=45 Identities=31% Similarity=0.852 Sum_probs=27.1
Q ss_pred CccccccccccccccCCceEEe-C--CC-CcccHHHHHHHHhcCCCCCCCCCce
Q 022899 8 ATLCSICWEEASETCGRSIVRL-Q--CS-HLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L-~--Cg-H~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
...| ||..... + ..+.- . |. .+||..|+..--...+.-.||.|+.
T Consensus 16 ~~~C-~C~~~~~---g-~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~ 64 (71)
T 1wen_A 16 PTYC-LCHQVSY---G-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 64 (71)
T ss_dssp CCCS-TTCCCSC---S-SEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSS
T ss_pred CCEE-ECCCCCC---C-CEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCc
Confidence 4457 8987532 1 22222 4 55 6999999983222235567999974
No 87
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=62.15 E-value=2 Score=35.87 Aligned_cols=49 Identities=22% Similarity=0.630 Sum_probs=31.5
Q ss_pred CCccccccccccccccCCceEEe-CCCCcccHHHHHHHHh---cCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFN---VTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~---~k~s~~CPlCR~i 58 (290)
....| ||.....+ +...+.- .|.-+||..|+..-.. ......||.|+..
T Consensus 7 ~~~~C-~C~~~~~~--~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDE--SKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCT--TSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCC--CCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34568 99876532 1223333 7899999999964321 2356789999843
No 88
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=61.64 E-value=3.9 Score=32.16 Aligned_cols=46 Identities=28% Similarity=0.581 Sum_probs=30.6
Q ss_pred CCccccccccccccccCCceEEe--CCCCcccHHHHHHHHhc---CCCCCCCCC
Q 022899 7 AATLCSICWEEASETCGRSIVRL--QCSHLFHLDCIGSAFNV---TGIMQCPNC 55 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L--~CgH~FH~~CI~swl~~---k~s~~CPlC 55 (290)
....|.+|.+.+++ ...++. .=.|.||.-|-+..++. .....||.=
T Consensus 14 a~l~CtlC~erLEd---tHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 14 GPLCCTICHERLED---THFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CSCCCSSSCSCCSS---TTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CeeEeecchhhhcc---CceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 34679999999985 233332 22899999999988852 233446643
No 89
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=60.09 E-value=2.8 Score=32.59 Aligned_cols=45 Identities=27% Similarity=0.628 Sum_probs=28.0
Q ss_pred ccccccccccccccCCceEEe-CCCCcccHHHHHHHHh-cCCCCCCCCCce
Q 022899 9 TLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFN-VTGIMQCPNCRE 57 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~-~k~s~~CPlCR~ 57 (290)
..| ||-....+ ...+.- .|.-+||..|+..-.. ....-.||.|+.
T Consensus 29 vrC-iC~~~~~~---~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDD---GYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCS---SCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCC---CcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 346 78765432 123333 7899999999875332 123467999973
No 90
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=59.72 E-value=2.2 Score=29.40 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=27.8
Q ss_pred cccccccccccccCCceEEe--CCCCcccHHHHHHHHh--cCCCCCCCCCc
Q 022899 10 LCSICWEEASETCGRSIVRL--QCSHLFHLDCIGSAFN--VTGIMQCPNCR 56 (290)
Q Consensus 10 eCsICLE~~sds~~~~~~~L--~CgH~FH~~CI~swl~--~k~s~~CPlCR 56 (290)
.|.||...+.+ +...+.- .|.-+||..|+..-.. ......||.|+
T Consensus 4 ~cc~C~~p~~~--~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKD--KVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCT--TCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCC--CCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 47788877643 2223332 4888999999874332 12567799985
No 91
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=59.42 E-value=11 Score=31.71 Aligned_cols=45 Identities=20% Similarity=0.434 Sum_probs=31.4
Q ss_pred CCccccccccccccccCCceEEe-CCCCcccHHHHHHHHh---------cCCCCCCCCCce
Q 022899 7 AATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFN---------VTGIMQCPNCRE 57 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~---------~k~s~~CPlCR~ 57 (290)
.++.|.||.+.-. +.-- .|...||..||..-+. ..+.=.||.|+.
T Consensus 62 ~~d~C~vC~~GG~------LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGN------LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSS------EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCc------EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3567999986421 2222 7999999999997652 245567999974
No 92
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=58.13 E-value=5.7 Score=28.22 Aligned_cols=45 Identities=22% Similarity=0.756 Sum_probs=30.7
Q ss_pred CCccccccccccccccCCceEEe-CCCCcccHHHHHHHHh--cCCCCCCCCCce
Q 022899 7 AATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFN--VTGIMQCPNCRE 57 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~--~k~s~~CPlCR~ 57 (290)
.+..|.||.+.- .+..- .|...||..|+..-+. .++.-.||.|+.
T Consensus 10 ~~~~C~vC~~~g------~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQGG------EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCCS------SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCCC------cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 456799998631 12222 7899999999987442 235567999974
No 93
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=56.41 E-value=1.3 Score=31.75 Aligned_cols=48 Identities=25% Similarity=0.737 Sum_probs=27.5
Q ss_pred ccCCccccccccccccccCCceEEe-C--CC-CcccHHHHHHHHhcCCCCCCCCCce
Q 022899 5 AAAATLCSICWEEASETCGRSIVRL-Q--CS-HLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 5 ~~~~~eCsICLE~~sds~~~~~~~L-~--Cg-H~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
+.+..-| ||.+... + ..+.- . |. .+||..|+..--..++.-.||.|+.
T Consensus 6 ~~e~~yC-~C~~~~~---g-~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 6 SNEPTYC-LCHQVSY---G-EMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp --CCEET-TTTEECC---S-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCCcEE-ECCCCCC---C-CeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 3445557 8987532 1 22222 5 55 6999999983222234567998863
No 94
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=56.14 E-value=1.7 Score=31.84 Aligned_cols=47 Identities=26% Similarity=0.702 Sum_probs=29.5
Q ss_pred cCCccccccccccccccCCceEEe-CCCCcccHHHHHHHHh-cCCCCCCCCCc
Q 022899 6 AAATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFN-VTGIMQCPNCR 56 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~-~k~s~~CPlCR 56 (290)
.+...| ||..... +...+.- .|..+||..|+..--. ......||.|+
T Consensus 17 ~~~~~C-iC~~~~~---~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~ 65 (68)
T 3o70_A 17 QGLVTC-FCMKPFA---GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCR 65 (68)
T ss_dssp TTCCCS-TTCCCCT---TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHH
T ss_pred CCceEe-ECCCcCC---CCCEEECCCCCccccccccCcCcccCCCcEECCCCC
Confidence 345567 8987543 2223333 7999999999874321 22456788886
No 95
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=56.03 E-value=5.2 Score=27.02 Aligned_cols=45 Identities=29% Similarity=0.781 Sum_probs=28.1
Q ss_pred cccccccccccccCCceEEe-CCCCcccHHHHHHHHh--cCCCCCCCCCce
Q 022899 10 LCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFN--VTGIMQCPNCRE 57 (290)
Q Consensus 10 eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~--~k~s~~CPlCR~ 57 (290)
.|.||...-. ...+..- .|...||..|+..-+. .++.-.||.|+.
T Consensus 2 ~C~vC~~~~~---~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE---DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC---CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCC---CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888886521 1122222 7999999999975432 123456999964
No 96
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=55.55 E-value=11 Score=36.43 Aligned_cols=45 Identities=22% Similarity=0.359 Sum_probs=30.5
Q ss_pred ccccccccccccccCCceEEe-CCCCc--ccHHHHHHHHhcCCCCCCCCCcee
Q 022899 9 TLCSICWEEASETCGRSIVRL-QCSHL--FHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L-~CgH~--FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
..|+|-+..+.. +++. .|.|. |-..-+.......+.-.||+|.+.
T Consensus 250 L~CPlS~~ri~~-----PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~ 297 (371)
T 3i2d_A 250 LQCPISYTRMKY-----PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQID 297 (371)
T ss_dssp SBCTTTSSBCSS-----EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCB
T ss_pred ecCCCccccccc-----cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcc
Confidence 458877777763 5554 89998 555545544445677789999854
No 97
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=54.02 E-value=1.3 Score=31.57 Aligned_cols=51 Identities=25% Similarity=0.505 Sum_probs=32.7
Q ss_pred cCCccccccccccccccCCceEEe-CCCCcccHHHHHHHHh-----cCCCCCCCCCce
Q 022899 6 AAATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFN-----VTGIMQCPNCRE 57 (290)
Q Consensus 6 ~~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~-----~k~s~~CPlCR~ 57 (290)
..+..|.||......+.+ .+..- .|.-.||..|+..-+. .++.-.|+.|+.
T Consensus 4 ~~~~~C~vC~~~~~~~~~-~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPN-EMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCCBSSSCCCCCBTTB-CEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCC-CEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 456789999976432111 22222 8999999999885331 245567998863
No 98
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=52.92 E-value=2.3 Score=32.63 Aligned_cols=50 Identities=26% Similarity=0.632 Sum_probs=31.5
Q ss_pred CCccccccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCCCCCCCce
Q 022899 7 AATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
.+..|.||.+.-..+.+ .+..- .|.-.||..|+..-...++.-.||.|..
T Consensus 24 ~~~~C~vC~~~~s~~~~-~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 24 EDAVCSICMDGESQNSN-VILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCSSCCSSSSCSEE-EEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCcCCcCCCCCCCCCC-CEEECCCCCchhhcccCCCCccCCCceECccccC
Confidence 45679999975311111 12222 7888999999985433345567999974
No 99
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=48.44 E-value=5.3 Score=34.43 Aligned_cols=46 Identities=24% Similarity=0.684 Sum_probs=31.0
Q ss_pred CCccccccccccccccCCceEEe-CCCCcccHHHHHHHHh--cCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFN--VTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~--~k~s~~CPlCR~i 58 (290)
.++.|.+|.+.- .+..- .|...||..|+..-+. .++.-.||.|+..
T Consensus 6 ~~~~C~~C~~~g------~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNGG------DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCCE------EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC------ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 456799998541 12222 7899999999876543 2344569999854
No 100
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=45.74 E-value=5.4 Score=29.33 Aligned_cols=48 Identities=27% Similarity=0.689 Sum_probs=29.2
Q ss_pred CccccccccccccccCCceEEe-CCCCcccHHHHHHHHhc---CCCCCCCCCcee
Q 022899 8 ATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNV---TGIMQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~---k~s~~CPlCR~i 58 (290)
...| ||.....+ +...+.- .|.-+||..|+..--.. .....||.|+..
T Consensus 10 ~~yC-iC~~~~~~--~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 10 PVYC-VCRLPYDV--TRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CEET-TTTEECCT--TSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eeEE-ECCCcCCC--CCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3345 88765431 2223333 78999999999743221 135679999743
No 101
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=43.59 E-value=26 Score=28.86 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=30.8
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHH------h---cCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAF------N---VTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl------~---~k~s~~CPlCR~i 58 (290)
.++.|.||-+.-+ .+.==.|-..||.+||..-+ . ..+.=.|+.|+..
T Consensus 56 ~~~~C~vC~dGG~-----LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 56 MDEQCRWCAEGGN-----LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBSSCTTTCCCSE-----EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCcCeecCCCCe-----eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4566999986521 11112789999999999752 1 2345679999743
No 102
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=43.09 E-value=2.7 Score=30.28 Aligned_cols=46 Identities=28% Similarity=0.844 Sum_probs=27.3
Q ss_pred CCccccccccccccccCCceEEe-C--CC-CcccHHHHHHHHhcCCCCCCCCCce
Q 022899 7 AATLCSICWEEASETCGRSIVRL-Q--CS-HLFHLDCIGSAFNVTGIMQCPNCRE 57 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L-~--Cg-H~FH~~CI~swl~~k~s~~CPlCR~ 57 (290)
....| ||..... + ..+.- . |. .+||..|+..--...+.-.||.|+.
T Consensus 10 e~~yC-~C~~~~~---g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY---G-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC---S-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC---C-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 34556 8987532 1 22222 4 44 7999999983222234567999963
No 103
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=42.35 E-value=7.2 Score=32.87 Aligned_cols=48 Identities=25% Similarity=0.689 Sum_probs=31.4
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHh--cCCCCCCCCCceec
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFN--VTGIMQCPNCREVE 59 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~--~k~s~~CPlCR~i~ 59 (290)
.++.|.||.+. +..+.--.|.-.||..|+..-+. .++.-.||.|+...
T Consensus 3 ~~~~C~~C~~~-----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG-----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC-----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC-----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35679999854 12221127899999999876553 23446699998543
No 104
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=40.59 E-value=27 Score=33.50 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=30.5
Q ss_pred cccccccccccccCCceEEe-CCCCc--ccHHHHHHHHhcCCCCCCCCCcee
Q 022899 10 LCSICWEEASETCGRSIVRL-QCSHL--FHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 10 eCsICLE~~sds~~~~~~~L-~CgH~--FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
.|+|-+..++. +++. .|.|. |-..-+......++.-.||+|.+.
T Consensus 217 ~CPlS~~ri~~-----P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~ 263 (360)
T 4fo9_A 217 MCPLGKMRLTI-----PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKK 263 (360)
T ss_dssp BCTTTCSBCSS-----EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSB
T ss_pred eCCCccceecc-----CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcc
Confidence 48877777763 5554 89998 555555554455677789999854
No 105
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=38.71 E-value=4 Score=29.77 Aligned_cols=47 Identities=23% Similarity=0.536 Sum_probs=29.1
Q ss_pred CccccccccccccccCCceEEe-CCCCcccHHHHHHHHh--cCCCCCCCCCce
Q 022899 8 ATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFN--VTGIMQCPNCRE 57 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~--~k~s~~CPlCR~ 57 (290)
...| ||.....+ +...+.- .|.-+||..|+..--. ......||.|+.
T Consensus 16 ~~~C-~C~~~~~~--g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 16 KVDC-KCGTKDDD--GERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp EECC-TTCCCSCC--SSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred ceEe-eCCCccCC--CCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 3458 78776432 2223333 7899999999875321 124567999974
No 106
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=34.66 E-value=8.4 Score=30.30 Aligned_cols=48 Identities=21% Similarity=0.600 Sum_probs=31.8
Q ss_pred CccccccccccccccCCceEEe--CCCCcccHHHHHHHH--------hcCCCCCCCCCce
Q 022899 8 ATLCSICWEEASETCGRSIVRL--QCSHLFHLDCIGSAF--------NVTGIMQCPNCRE 57 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L--~CgH~FH~~CI~swl--------~~k~s~~CPlCR~ 57 (290)
...|.||...+.++ ...+.- .|.-+||..|+..-- +......||.|+.
T Consensus 3 ~~~C~iC~~p~~~~--~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 3 VYPCGACRSEVNDD--QDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CCBCTTTCSBCCTT--SCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred cCCCCCCCCccCCC--CCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 35699999987542 223333 588999999986332 1124567999984
No 107
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=33.29 E-value=15 Score=26.81 Aligned_cols=45 Identities=31% Similarity=0.693 Sum_probs=28.9
Q ss_pred ccccccccccccccCCceEEe-CCCCcccHHHHHHHHh-------cCCCCCCCCCce
Q 022899 9 TLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFN-------VTGIMQCPNCRE 57 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~-------~k~s~~CPlCR~ 57 (290)
..| ||..... +...+.- .|..+||..|+..-.. ......||.|+.
T Consensus 17 ~~C-~C~~~~~---~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 17 LYC-ICRQPHN---NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCS-TTCCCCC---SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CEE-ECCCccC---CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 346 8887653 1223333 7999999999864321 135678999974
No 108
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=33.26 E-value=7.3 Score=26.67 Aligned_cols=41 Identities=27% Similarity=0.729 Sum_probs=25.5
Q ss_pred ccccccccccCCceEEe-CCCCcccHHHHHHHHh-cCCCCCCCCCc
Q 022899 13 ICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFN-VTGIMQCPNCR 56 (290)
Q Consensus 13 ICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~-~k~s~~CPlCR 56 (290)
||..... +...+.- .|.-+||..|+..--. ......||.|+
T Consensus 8 ~C~~~~~---~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~ 50 (52)
T 3o7a_A 8 FCMKPFA---GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCR 50 (52)
T ss_dssp TTCCBCT---TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHH
T ss_pred EeCCcCC---CCCEEEcCCCCccccccccCCCcccCCCcEECcCCC
Confidence 7766432 2233333 7999999999874332 23456788886
No 109
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=31.65 E-value=17 Score=26.27 Aligned_cols=33 Identities=27% Similarity=0.643 Sum_probs=22.5
Q ss_pred CccccccccccccccCCceEEe--CCCCcccHHHHHH
Q 022899 8 ATLCSICWEEASETCGRSIVRL--QCSHLFHLDCIGS 42 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L--~CgH~FH~~CI~s 42 (290)
...|.+|...+.+ +...+.- .|.-+||..|+..
T Consensus 8 ~~~C~~C~~p~~~--~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 8 VYPCGICTNEVND--DQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp -CBCTTTCSBCCT--TSCEEEBTTTTCCEEEHHHHTC
T ss_pred cCcCccCCCccCC--CCCeEecccCccccCchhccCC
Confidence 5679999998753 2222222 6889999999764
No 110
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=31.05 E-value=15 Score=26.89 Aligned_cols=28 Identities=29% Similarity=0.876 Sum_probs=20.0
Q ss_pred CCCCcccHHHHHHHHhc--CC-CCCCCCCce
Q 022899 30 QCSHLFHLDCIGSAFNV--TG-IMQCPNCRE 57 (290)
Q Consensus 30 ~CgH~FH~~CI~swl~~--k~-s~~CPlCR~ 57 (290)
.|...||..|+..-+.. ++ .=.||.|+.
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 78999999999854432 23 446999863
No 111
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=30.59 E-value=10 Score=32.58 Aligned_cols=46 Identities=33% Similarity=0.681 Sum_probs=30.4
Q ss_pred CccccccccccccccCCceEEeCCCCcccHHHHHHHHh--cCCCCCCCCCcee
Q 022899 8 ATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFN--VTGIMQCPNCREV 58 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~--~k~s~~CPlCR~i 58 (290)
++.|.+|.+. +..+.--.|.-.||..|+..-+. ..+.-.||.|+..
T Consensus 2 ~~~C~~C~~~-----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP-----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC-----SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC-----CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4679999854 11222226888999999975442 2355579999854
No 112
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.54 E-value=8.6 Score=28.79 Aligned_cols=44 Identities=18% Similarity=0.628 Sum_probs=26.4
Q ss_pred cccccccccccccCCceEEe-CCCCcccHHHHHHHHhc--CC-CCCCCCCc
Q 022899 10 LCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNV--TG-IMQCPNCR 56 (290)
Q Consensus 10 eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~--k~-s~~CPlCR 56 (290)
.|.||...-. +..+..- .|...||..|+..-+.. ++ .=.||.|+
T Consensus 28 ~C~vC~~~~~---~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 28 SCRVCGGKHE---PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp SCSSSCCCCC---STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred CCcCcCCcCC---CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCcc
Confidence 5677775311 1122222 78999999999854432 23 34688885
No 113
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=29.43 E-value=11 Score=37.12 Aligned_cols=46 Identities=26% Similarity=0.733 Sum_probs=28.8
Q ss_pred cccccccccccccCCceEEe-CCCCcccHHHHHHHHhcC---CCCCCCCCcee
Q 022899 10 LCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFNVT---GIMQCPNCREV 58 (290)
Q Consensus 10 eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~~k---~s~~CPlCR~i 58 (290)
.| ||...... +...+.. .|.-+||..|+.---... ....||.|+..
T Consensus 39 yC-~C~~~~d~--~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 39 YC-VCRQPYDV--NRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp ET-TTTEECCT--TSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred EE-eCCCcCCC--CCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 35 88876531 2233333 799999999997433211 34679999843
No 114
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=29.22 E-value=53 Score=35.37 Aligned_cols=45 Identities=16% Similarity=0.004 Sum_probs=36.9
Q ss_pred CCccccccccccccccCCceEEeCCC-CcccHHHHHHHHhcCCCCCCCCCcee
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCS-HLFHLDCIGSAFNVTGIMQCPNCREV 58 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~Cg-H~FH~~CI~swl~~k~s~~CPlCR~i 58 (290)
+...|+|-++.+.+ ++.++-| +++-..+|..|+.. ..+||.=|..
T Consensus 890 ~~F~cPIs~~lM~D-----PVilpsG~~TydR~~I~~wl~~--~~tdP~Tr~~ 935 (968)
T 3m62_A 890 DEFLDPLMYTIMKD-----PVILPASKMNIDRSTIKAHLLS--DSTDPFNRMP 935 (968)
T ss_dssp GGGBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCB
T ss_pred HHhCCcchhhHHhC-----CeEcCCCCEEECHHHHHHHHhc--CCCCCCCCCC
Confidence 45569999999986 8889887 69999999999974 4469998854
No 115
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=27.70 E-value=4.8 Score=29.12 Aligned_cols=45 Identities=24% Similarity=0.544 Sum_probs=25.7
Q ss_pred ccccccccccccccCCceEEe---CCCCcccHHHHHHHHhcC------CCCCCCCCce
Q 022899 9 TLCSICWEEASETCGRSIVRL---QCSHLFHLDCIGSAFNVT------GIMQCPNCRE 57 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L---~CgH~FH~~CI~swl~~k------~s~~CPlCR~ 57 (290)
..| ||-....+ ...+.- .|.-+||..|+.---... ....||.||.
T Consensus 11 v~C-~C~~~~~~---g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVN---DSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCC---SCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCC---CCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 346 89665332 123333 388899999985321100 1356999973
No 116
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=27.18 E-value=6.1 Score=30.10 Aligned_cols=49 Identities=20% Similarity=0.580 Sum_probs=31.4
Q ss_pred CccccccccccccccCCceEEe-CCCCcccHHHHHHHHh------cCCCCCCCCCce
Q 022899 8 ATLCSICWEEASETCGRSIVRL-QCSHLFHLDCIGSAFN------VTGIMQCPNCRE 57 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L-~CgH~FH~~CI~swl~------~k~s~~CPlCR~ 57 (290)
+..|.||...-..+.+ .+..- .|...||..|+..-+. .++.-.|+.|+.
T Consensus 16 ~~~C~vC~~~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 16 GLACVVCRQMTVASGN-QLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CCSCSSSCCCCCCTTC-CEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCcCCCCCCCCCCCCC-ceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 4569999976321111 22222 7899999999886542 235567999974
No 117
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=25.15 E-value=34 Score=26.84 Aligned_cols=34 Identities=21% Similarity=0.489 Sum_probs=22.5
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHH
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSA 43 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~sw 43 (290)
.++.|.||-.--. ....+-+ -|+-.||..|+++.
T Consensus 14 ~D~~C~VC~~~t~--~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWTA--ESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCCS--SCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCcccCccccccc--cceeccc-cccccccHhhcccc
Confidence 4677999974321 1122222 38999999999985
No 118
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.19 E-value=20 Score=26.40 Aligned_cols=46 Identities=20% Similarity=0.469 Sum_probs=27.7
Q ss_pred CccccccccccccccCCceEEe---CCCCcccHHHHHHHHhc-------CCCCCCCCCce
Q 022899 8 ATLCSICWEEASETCGRSIVRL---QCSHLFHLDCIGSAFNV-------TGIMQCPNCRE 57 (290)
Q Consensus 8 ~~eCsICLE~~sds~~~~~~~L---~CgH~FH~~CI~swl~~-------k~s~~CPlCR~ 57 (290)
...| ||-..... + ..+.- .|..+||..|+..--.. .....||.|+.
T Consensus 16 ~~~C-iC~~~~~~--g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 16 KVRC-VCGNSLET--D-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCC-SSCCCCCC--S-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CEEe-ECCCcCCC--C-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 3457 78876321 2 22221 58899999998742211 13567999974
No 119
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=23.60 E-value=66 Score=23.13 Aligned_cols=43 Identities=28% Similarity=0.642 Sum_probs=28.9
Q ss_pred ccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCC
Q 022899 9 TLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNC 55 (290)
Q Consensus 9 ~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlC 55 (290)
..|-.|+..+.+.+ ...=..|+..||.+|=. +.+..-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~--~y~C~~C~~~FC~dCD~--fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH--VYVCAVCQNVFCVDCDV--FVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE--EECCTTTTCCBCHHHHH--TTTTTSCSSSTT
T ss_pred CcccccCcccCCCc--cEECCccCcCcccchhH--HHHhhccCCcCC
Confidence 45999998885311 11123799999999954 334555679988
No 120
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.39 E-value=99 Score=23.46 Aligned_cols=41 Identities=15% Similarity=-0.036 Sum_probs=28.3
Q ss_pred CCcccccccccccCCcCCCCCcceee-------ccCCcCC--CCCCCCCCccceecccCCCCcCCCccCCCC
Q 022899 96 HNDWGPGFQRVTEFPLLGHRDCPIFT-------ANHHLYG--PPMISEISTSRVIFHGHEPIHQAVFTSMCG 158 (290)
Q Consensus 96 g~~wCPf~~~~~~Lp~l~~rE~a~~~-------yn~h~~g--~~~~~e~~~~~~~~h~~~Wh~~~~f~~~~s 158 (290)
....|.++.. ..++..++. ||..|.+ +..++++ .| ||..|.
T Consensus 15 ~~~~C~vC~~-------~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g----------~W-----~C~~C~ 64 (92)
T 2e6r_A 15 DSYICQVCSR-------GDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRG----------IW-----RCPKCI 64 (92)
T ss_dssp CCCCCSSSCC-------SGGGGGCEECTTTCCEECSSSSSSCCSSCCSS----------CC-----CCHHHH
T ss_pred CCCCCccCCC-------cCCCCCEEEcCCCCchhccccCCCCcccCCCC----------Cc-----CCccCc
Confidence 3456888875 222222333 9999998 6677888 99 998884
No 121
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=23.03 E-value=36 Score=28.63 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=40.1
Q ss_pred CCccccccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCCCCCCCcee-----ccCcccccc
Q 022899 7 AATLCSICWEEASETCGRSIVRLQCSHLFHLDCIGSAFNVTGIMQCPNCREV-----ENGVWMRFE 67 (290)
Q Consensus 7 ~~~eCsICLE~~sds~~~~~~~L~CgH~FH~~CI~swl~~k~s~~CPlCR~i-----~~g~~l~a~ 67 (290)
+...|.+|...|.--......-..|.+.+|..|-. |......-.|=+|++. -.+.|.|..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~rel~~kSGeWf~~~ 131 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLARVVKIGSLEWYYQH 131 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHHHHHHHHHCHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHHHHHHHhccHHHHHH
Confidence 46789999998743323333334899999999973 4433444568888732 567777764
No 122
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=22.55 E-value=32 Score=21.32 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=11.9
Q ss_pred chhhhccCCCCcccCCCCC
Q 022899 196 QPRRRSNGLLGWLPAEHVP 214 (290)
Q Consensus 196 ~~~r~~~~~~~w~~~~~~~ 214 (290)
||||-+.+-++|-..|.-|
T Consensus 3 rrrrprkrplewdedeepp 21 (28)
T 3ukw_C 3 RRRRPRKRPLEWDEDEEPP 21 (28)
T ss_dssp ----CCCCCCCCCGGGSCC
T ss_pred cccccccCCcccccccCcc
Confidence 4566677899998887654
No 123
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=21.87 E-value=39 Score=20.94 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=11.2
Q ss_pred chhhhccCCCCcccCCCCC
Q 022899 196 QPRRRSNGLLGWLPAEHVP 214 (290)
Q Consensus 196 ~~~r~~~~~~~w~~~~~~~ 214 (290)
|||||+.+.-+|-....-|
T Consensus 3 rrrrrrkrkrewdddddpp 21 (28)
T 3ukx_C 3 RRRRRRKRKREWDDDDDPP 21 (28)
T ss_dssp ---CCCCCCCCCCCSSSCC
T ss_pred hhHHHHHhhcccccCCCch
Confidence 4566677778997766544
No 124
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=21.83 E-value=53 Score=24.00 Aligned_cols=24 Identities=13% Similarity=0.056 Sum_probs=20.9
Q ss_pred eccCCcCCCCCCCCCCccceecccCCCCcCCCccCCCCC
Q 022899 121 TANHHLYGPPMISEISTSRVIFHGHEPIHQAVFTSMCGN 159 (290)
Q Consensus 121 ~yn~h~~g~~~~~e~~~~~~~~h~~~Wh~~~~f~~~~s~ 159 (290)
-||..|+|++..+.+ .| |+..|..
T Consensus 41 wfH~~Cvgl~~~p~g----------~w-----~Cp~C~~ 64 (71)
T 1wen_A 41 WFHFACVGLTTKPRG----------KW-----FCPRCSQ 64 (71)
T ss_dssp CEETTTTTCSSCCSS----------CC-----CCTTTSS
T ss_pred cEecccCCcCcCCCC----------CE-----ECCCCCc
Confidence 389999999999988 89 9999843
Done!