BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022900
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 218 bits (555), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 102/143 (71%), Positives = 117/143 (81%)
Query: 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRH 171
+++ RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI H
Sbjct: 1 MEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINH 60
Query: 172 DVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231
DVVEPL +EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STS
Sbjct: 61 DVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTS 120
Query: 232 EVYGDPLQHPQKETYWGNVNPIG 254
EVYGDP HPQ E YWG+VNPIG
Sbjct: 121 EVYGDPEVHPQSEDYWGHVNPIG 143
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 213 bits (543), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 101/137 (73%), Positives = 112/137 (81%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 29 RILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 88
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLN LGLAKRVGAR LL STSEVYGDP
Sbjct: 89 YIEVDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGARLLLASTSEVYGDP 148
Query: 238 LQHPQKETYWGNVNPIG 254
HPQ E YWG+VNPIG
Sbjct: 149 EVHPQSEDYWGHVNPIG 165
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 80/146 (54%), Gaps = 15/146 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+RIVVTGGAGF+GSHLVD+L+ G V+VVDN +GR+E F NP+ EL D+ +
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRRE-----FVNPSAELHVRDLKDY 55
Query: 177 LL---LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLLTSTSE 232
++ D ++H A P+ NVV T N+L A++ G R + S+S
Sbjct: 56 SWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSST 115
Query: 233 VYGDP--LQHPQKETYWGNVNPIGTY 256
VYGD + P++E Y PI Y
Sbjct: 116 VYGDADVIPTPEEEPY----KPISVY 137
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 13/143 (9%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV----V 174
IVVTGGAGF+GSH+VD+L + + ++V+DN +G +E F N L++ D+ +
Sbjct: 4 IVVTGGAGFIGSHVVDKL-SESNEIVVIDNLSSGNEE-----FVNEAARLVKADLAADDI 57
Query: 175 EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTSEV 233
+ L ++++H+A NP + + NV+ T +L ++ G +R + TSTS V
Sbjct: 58 KDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTV 117
Query: 234 YGDPLQHPQKETYWGNVNPIGTY 256
YG+ P E Y +PI Y
Sbjct: 118 YGEAKVIPTPEDY--PTHPISLY 138
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 73/146 (50%), Gaps = 19/146 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+RIVVTGGAGF+GSHLVD+L+ G V+VVD ++ + EL D+ +
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVD---------IVQRDTGGSAELHVRDLKDY 51
Query: 177 LL---LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLLTSTSE 232
++ D ++H A P+ NVV T N+L A++ G R + S+S
Sbjct: 52 SWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSST 111
Query: 233 VYGDP--LQHPQKETYWGNVNPIGTY 256
VYGD + P++E Y PI Y
Sbjct: 112 VYGDADVIPTPEEEPY----KPISVY 133
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 17/145 (11%)
Query: 106 GKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPN 165
G +P G K ++ +TG G +GSH+ + L+ RGD V+ +DNF TGR+E++ H PN
Sbjct: 13 GLVPRGSHMK--KVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDH---PN 67
Query: 166 FELIR-----HDVVEPLL--LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
+ H +V L+ L+ D + H A +N TN VG N++ A
Sbjct: 68 LTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYN---DTLTNCVGGSNVVQAA 124
Query: 219 KRVG-ARFLLTSTSEVYG-DPLQHP 241
K+ RF+ T+ YG P+Q P
Sbjct: 125 KKNNVGRFVYFQTALCYGVKPIQQP 149
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 10/138 (7%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN-PNFELIRHDV--- 173
++++TGG GF+GS+L +++G +IV DN + +H + NFE + D+
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNK 62
Query: 174 --VEPLLLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLL 227
V L+ + D +HLA + NP + NV GTLN+L ++ + +
Sbjct: 63 NDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIY 122
Query: 228 TSTSEVYGDPLQHPQKET 245
+ST++VYGD Q+ ET
Sbjct: 123 SSTNKVYGDLEQYKYNET 140
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIAR------GDSVIVVDNF-FTGRKENVMHHFGNPNFELI 169
+R++VTGGAGF+GSH V +L+A D VIV+D+ + G + N+ +P +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 170 RHDVVEPLLLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A 223
D+ + LL VD I H A + +TNV GT +L A G
Sbjct: 61 HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 224 RFLLTSTSEVYG 235
R + ST EVYG
Sbjct: 121 RVVHVSTDEVYG 132
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 15/149 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGT 255
+ST+ VYGD + P E++ P GT
Sbjct: 121 FSSTATVYGDNPKIPYVESF-----PTGT 144
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 18/184 (9%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM-------HHFGNPNFELIRH 171
++VTGGAG++GSH V LI G +V DN ++V HH +L
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDR 73
Query: 172 DVVEPLLLE--VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLT 228
+E + E +D + H A + P++ N++GT+ +L L ++ ++F+ +
Sbjct: 74 KGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFS 133
Query: 229 STSEVYGDPLQHPQ-----KETYWGNVNPIGTYXXXXXXXXXXXXXXXRPSRKACRFFIL 283
S++ VYGD + P +E G NP Y +K+ +F IL
Sbjct: 134 SSATVYGDATRFPNMIPIPEECPLGPTNP---YGHTKYAIENILNDLYNSDKKSWKFAIL 190
Query: 284 LYRN 287
Y N
Sbjct: 191 RYFN 194
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 8/137 (5%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNF--ELIRHDVV 174
+R++VTGGAGF+GSH+V+ L+ARG V V+DN TG++ENV G P F +L + V
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPK--GVPFFRVDLRDKEGV 58
Query: 175 EPLLLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS- 231
E E + H A AS +PV + N++G LN+L ++ G L+ +++
Sbjct: 59 ERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTG 118
Query: 232 -EVYGDPLQHPQKETYW 247
+YG+ + + E W
Sbjct: 119 GAIYGEVPEGERAEETW 135
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIAR------GDSVIVVDNF-FTGRKENVMHHFGNPNFELI 169
+R++VTGGAGF+GSH V +L+A D VIV+D+ + G + N+ +P +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 170 RHDVVEPLLLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A 223
D+ + LL VD I H A + +TNV GT +L A G
Sbjct: 61 HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 224 RFLLTSTSEVYG 235
R + ST++VYG
Sbjct: 121 RVVHVSTNQVYG 132
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 15/149 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGT 255
+S++ VYGD + P E++ P GT
Sbjct: 121 FSSSATVYGDQPKIPYVESF-----PTGT 144
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 15/149 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGT 255
+S++ VYGD + P E++ P GT
Sbjct: 121 FSSSATVYGDQPKIPYVESF-----PTGT 144
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 15/149 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGT 255
+S++ VYGD + P E++ P GT
Sbjct: 121 FSSSATVYGDNPKIPYVESF-----PTGT 144
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 15/149 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGT 255
+S++ VYGD + P E++ P GT
Sbjct: 121 FSSSATVYGDNPKIPYVESF-----PTGT 144
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGT 255
+S + VYGD + P E++ P GT
Sbjct: 121 FSSAATVYGDQPKIPYVESF-----PTGT 144
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSV--IVVDNF-FTGRKENVMHHFGNPNFELIRHDV- 173
I+VTGGAGF+GS+ V + V V+D + G K N+ G+ EL+ D+
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGD-RVELVVGDIA 64
Query: 174 ----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 229
V+ L + D I H A + + +P I TN +GT +L A++ RF S
Sbjct: 65 DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVS 124
Query: 230 TSEVYGD-PLQ 239
T EVYGD PL+
Sbjct: 125 TDEVYGDLPLR 135
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGT 255
+S + VYGD + P E++ P GT
Sbjct: 121 FSSAATVYGDQPKIPYVESF-----PTGT 144
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGT 255
+S + VYGD + P E++ P GT
Sbjct: 121 FSSAATVYGDNPKIPYVESF-----PTGT 144
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGT 255
+S + VYGD + P E++ P GT
Sbjct: 121 FSSAATVYGDNPKIPYVESF-----PTGT 144
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGT 255
+S + VYGD + P E++ P GT
Sbjct: 121 FSSVATVYGDNPKIPYVESF-----PTGT 144
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 14/133 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+RI++TGGAG +GS+L++ + +G ++V+DNF TG++E + G +I V +
Sbjct: 21 MRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAG---LSVIEGSVTDA 77
Query: 177 LLLEVDQIYHLACPASPVH----YKFNP---VKTIKTNVVGTLNMLGLAKRVGARFLLT- 228
LLE + + P VH YK +P + TNV G++N+ A + G + LL
Sbjct: 78 GLLE--RAFDSFKPTHVVHSAAAYK-DPDDWAEDAATNVQGSINVAKAASKAGVKRLLNF 134
Query: 229 STSEVYGDPLQHP 241
T+ YG P P
Sbjct: 135 QTALCYGRPATVP 147
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN------VMHHFGNPNFELIRHDV 173
++TG AGF+GS+L++ L+ V+ +DNF TG + N ++ NF+ I+ D+
Sbjct: 31 LITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDI 90
Query: 174 -----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 227
VD + H A S +P+ + TN+ G LNML A+ + F
Sbjct: 91 RNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTY 150
Query: 228 TSTSEVYGDPLQHPQKETYWG 248
++S YGD P+ E G
Sbjct: 151 AASSSTYGDHPGLPKVEDTIG 171
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 10/134 (7%)
Query: 116 GLRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNFFTGRK-ENVMHHFGNPNFELIRHD 172
++++VTGG GF+GS+ + ++ + VI +D G N+ +P + ++ D
Sbjct: 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGD 62
Query: 173 V-----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARF 225
V V+ L+ +VD + HLA + +P + +NV+GT +L +R RF
Sbjct: 63 VADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRF 122
Query: 226 LLTSTSEVYGDPLQ 239
+ ST EVYGD L+
Sbjct: 123 VHVSTDEVYGDILK 136
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 20/146 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVV 174
++I++TGGAGF+GS +V +I D+V+ +D + G E++ + + D+
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60
Query: 175 EPLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA---- 223
+ + + D + HLA + P I+TN+VGT +L +A++ +
Sbjct: 61 DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120
Query: 224 ------RFLLTSTSEVYGDPLQHPQK 243
RF ST EVYGD L HP +
Sbjct: 121 DKKNNFRFHHISTDEVYGD-LPHPDE 145
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
I++ GGAG++GSH V +L+ G SV+VVDN TG ++ + N +L + +
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVF 63
Query: 179 LE--VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYG 235
+ ++ + H A + P++ NV G L +L + +F+ +ST+ YG
Sbjct: 64 TQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYG 123
Query: 236 D-PLQHPQKETYWGNVNPIGTY 256
+ + +ET NP TY
Sbjct: 124 EVDVDLITEETM---TNPTNTY 142
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTG---RKENVMHHFGNPNFELIRHDVV 174
RI++TGGAGF+G HL L+A G+ V V+D+ E P EL D
Sbjct: 9 RILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERD-- 66
Query: 175 EPLLLEVDQIYHLACPAS-PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE 232
L +V +YHLA S P +K P+ + NV ++L L VG + ++ ST E
Sbjct: 67 ---LSDVRLVYHLASHKSVPRSFK-QPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCE 121
Query: 233 VYG--DPLQHPQK 243
VYG D L P+
Sbjct: 122 VYGQADTLPTPED 134
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 19/138 (13%)
Query: 118 RIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVE 175
+I++TGGAGF+GS LV +I D+V+VVD + G ++ + F + D+ +
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 176 PLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA---------- 218
L + D + HLA + P I+TN+VGT +L A
Sbjct: 63 RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122
Query: 219 KRVGARFLLTSTSEVYGD 236
K+ RF ST EVYGD
Sbjct: 123 KKSAFRFHHISTDEVYGD 140
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 13/142 (9%)
Query: 106 GKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF----FTGRKENVMHHF 161
G L + I+VTGGAGF+GS+ V + ++ ++ NF ++G NV
Sbjct: 14 GTENLYFQSNAXNILVTGGAGFIGSNFVHYXLQSYETYKII-NFDALTYSGNLNNVKSIQ 72
Query: 162 GNPNFELIRHDVVEPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNM 214
+PN+ ++ ++ LLE V I + A + NP+ TNV+GT+ +
Sbjct: 73 DHPNYYFVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTL 132
Query: 215 LGLAKRV-GARFLLTSTSEVYG 235
L L K+ + + ST EVYG
Sbjct: 133 LELVKKYPHIKLVQVSTDEVYG 154
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 12/142 (8%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN------VMHHFGNPNFELIRHDV 173
++TG AGF+GS+L+++L+ VI +DNF TG + N ++ F I D+
Sbjct: 42 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 101
Query: 174 -----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 227
E ++ VD + H A S +P+ T TN+ G LN+L AK + F
Sbjct: 102 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTY 161
Query: 228 TSTSEVYGDPLQHPQKETYWGN 249
++S YGD P+ E GN
Sbjct: 162 AASSSTYGDHPALPKVEENIGN 183
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 12/142 (8%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN------VMHHFGNPNFELIRHDV 173
++TG AGF+GS+L+++L+ VI +DNF TG + N ++ F I D+
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 88
Query: 174 -----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 227
E ++ VD + H A S +P+ T TN+ G LN+L AK + F
Sbjct: 89 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTY 148
Query: 228 TSTSEVYGDPLQHPQKETYWGN 249
++S YGD P+ E GN
Sbjct: 149 AASSSTYGDHPALPKVEENIGN 170
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 12/142 (8%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN------VMHHFGNPNFELIRHDV 173
++TG AGF+GS+L+++L+ VI +DNF TG + N ++ F I D+
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 88
Query: 174 -----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 227
E ++ VD + H A S +P+ T TN+ G LN+L AK + F
Sbjct: 89 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTY 148
Query: 228 TSTSEVYGDPLQHPQKETYWGN 249
++S YGD P+ E GN
Sbjct: 149 AASSSTYGDHPALPKVEENIGN 170
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 12/142 (8%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN------VMHHFGNPNFELIRHDV 173
++TG AGF+GS+L+++L+ VI +DNF TG + N ++ F I D+
Sbjct: 23 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 82
Query: 174 -----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 227
E ++ VD + H A S +P+ T TN+ G LN+L AK + F
Sbjct: 83 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTY 142
Query: 228 TSTSEVYGDPLQHPQKETYWGN 249
++S YGD P+ E GN
Sbjct: 143 AASSSTYGDHPALPKVEENIGN 164
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 9/137 (6%)
Query: 105 GGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP 164
G P R+ R+++ G GF+G+HL +RL+ + + + ++H P
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---P 58
Query: 165 NFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
+F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 59 HFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC 118
Query: 219 KRVGARFLLTSTSEVYG 235
+ R + STSEVYG
Sbjct: 119 VKYRKRIIFPSTSEVYG 135
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 18/149 (12%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV--- 173
+R ++TG AGFVG +L + L + V+ F T R PN E+I D+
Sbjct: 13 MRALITGVAGFVGKYLANHLTEQN-----VEVFGTSRNNEAKL----PNVEMISLDIMDS 63
Query: 174 --VEPLLLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK--RVGARFLL 227
V+ ++ ++ D I+HLA +S N T TNV GTL++L + + R L
Sbjct: 64 QRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILT 123
Query: 228 TSTSEVYGDPLQHPQKETYWGNVNPIGTY 256
+SE YG L + + P+ Y
Sbjct: 124 IGSSEEYGMILPEESPVSEENQLRPMSPY 152
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 9/137 (6%)
Query: 105 GGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP 164
G P R+ R+++ G GF+G+HL +RL+ + + + ++H P
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---P 58
Query: 165 NFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
+F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 59 HFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC 118
Query: 219 KRVGARFLLTSTSEVYG 235
+ R + STSEVYG
Sbjct: 119 VKYRKRIIFPSTSEVYG 135
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 9/137 (6%)
Query: 105 GGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP 164
G P R+ R+++ G GF+G+HL +RL+ + + + ++H P
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---P 58
Query: 165 NFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
+F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 59 HFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC 118
Query: 219 KRVGARFLLTSTSEVYG 235
+ R + STSEVYG
Sbjct: 119 VKYRKRIIFPSTSEVYG 135
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 9/137 (6%)
Query: 105 GGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP 164
G P R+ R+++ G GF+G+HL +RL+ + + + ++H P
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---P 58
Query: 165 NFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
+F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 59 HFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC 118
Query: 219 KRVGARFLLTSTSEVYG 235
+ R + STSEVYG
Sbjct: 119 VKYRKRIIFPSTSEVYG 135
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 109 PLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFEL 168
P R+ R+++ G GF+G+HL +RL+ + + + ++H P+F
Sbjct: 308 PACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---PHFHF 364
Query: 169 IRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
+ D+ +E + + D + L A+P+ Y NP++ + + L ++ +
Sbjct: 365 VEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR 424
Query: 223 ARFLLTSTSEVYG 235
R + STSEVYG
Sbjct: 425 KRIIFPSTSEVYG 437
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 9/137 (6%)
Query: 105 GGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP 164
G P R+ R+++ G GF+G+HL +RL+ + + + ++H P
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---P 58
Query: 165 NFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
+F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 59 HFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC 118
Query: 219 KRVGARFLLTSTSEVYG 235
+ R + ST+EVYG
Sbjct: 119 VKYRKRIIFPSTAEVYG 135
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 100 GAVNSGGKIPLGLKRKGL---RIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKE 155
G V G +P+ + L ++V GGAGFVGS+LV RL+ G + V VVDN + K
Sbjct: 13 GLVPRGSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKI 72
Query: 156 NVMHHFGNPNFELIRHDVVEPLLL-----EVDQIYHLACPASPVHYKFNPVKTIKTNVVG 210
NV H P + + LL E D ++HLA +P+ + N +
Sbjct: 73 NVPDH---PAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLT 129
Query: 211 TLNM 214
TL +
Sbjct: 130 TLKL 133
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 18/134 (13%)
Query: 119 IVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNF-----FTGRKENVMHHFGNP---NFEL 168
I++TGGAGFVGS+L V+V+D F F+ + + + HF N E+
Sbjct: 13 ILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEV 72
Query: 169 IRHDVVEPL------LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
I D+ PL L D ++H A + N +KTN LN+L +A+
Sbjct: 73 IAADINNPLDLRRLEKLHFDYLFHQAAVSDTT--MLNQELVMKTNYQAFLNLLEIARSKK 130
Query: 223 ARFLLTSTSEVYGD 236
A+ + S++ VYG+
Sbjct: 131 AKVIYASSAGVYGN 144
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV--- 173
+R+++ G GF+G+HL +RL+ + + + ++H P+F + D+
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---PHFHFVEGDISIH 57
Query: 174 ---VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230
+E + + D + L A+P+ Y NP++ + + L ++ + R + ST
Sbjct: 58 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 117
Query: 231 SEVYG 235
SEVYG
Sbjct: 118 SEVYG 122
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 18/155 (11%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK------ENV--MHHFGNPNFELI 169
+++VTGGAG++GSH V L+ G +V+DNF + E++ + + E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 170 RHDVVEPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
D+++ L+ + H A + P+ + N+ GT+ +L + K G
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 223 ARFLL-TSTSEVYGDPLQHPQKETY--WGNVNPIG 254
+ L+ +S++ VYG+P P E + G NP G
Sbjct: 124 VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYG 158
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 18/155 (11%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK------ENV--MHHFGNPNFELI 169
+++VTGGAG++GSH V L+ G +V+DNF + E++ + + E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 170 RHDVVEPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
D+++ L+ + H A + P+ + N+ GT+ +L + K G
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 223 ARFLL-TSTSEVYGDPLQHPQKETY--WGNVNPIG 254
+ L+ +S++ VYG+P P E + G NP G
Sbjct: 124 VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYG 158
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 18/155 (11%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK------ENV--MHHFGNPNFELI 169
+++VTGGAG++GSH V L+ G +V+DNF + E++ + + E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 170 RHDVVEPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
D+++ L+ + H A + P+ + N+ GT+ +L + K G
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 223 ARFLL-TSTSEVYGDPLQHPQKETY--WGNVNPIG 254
+ L+ +S++ VYG+P P E + G NP G
Sbjct: 124 VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYG 158
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 23/146 (15%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVV----DNFFTGRKENVMH--HFGNPNFELIRHDV 173
++TG G GS+L + L+ +G V + +F T R +++ H NP F L D+
Sbjct: 5 LITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDL 64
Query: 174 VEP-----LLLEV--DQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNML------GLAK 219
+ +L EV D++Y+L S V F +P T + +GTL +L GL K
Sbjct: 65 SDTSNLTRILREVQPDEVYNLGA-MSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEK 123
Query: 220 RVGARFLLTSTSEVYGDPLQHPQKET 245
+ RF STSE+YG + PQKET
Sbjct: 124 KT--RFYQASTSELYGLVQEIPQKET 147
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Query: 99 FGAVNSGGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM 158
G + + + P +K K ++++ G GF+G HL R++ D + + T R +++
Sbjct: 9 MGTLEAQTQGPGSMKAK--KVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLV 66
Query: 159 HHFGNPNFE---LIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNML 215
H FE I + VE + + D I L A+P Y P++ + + L ++
Sbjct: 67 KHERMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIV 126
Query: 216 GLAKRVGARFLLTSTSEVYG 235
A + G + STSEVYG
Sbjct: 127 RSAVKYGKHLVFPSTSEVYG 146
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 23/156 (14%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARG--------DSVIVVDNFFTGRKENVMH-HFGN-P 164
+G R+ VTG GF GS L L G D+ V F R ++M H G+
Sbjct: 8 QGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDLMESHIGDIR 67
Query: 165 NFELIRHDVVEPLLLEVDQIYHLAC-PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA 223
+FE +R + E + + ++H+A P + Y+ P+KT TNV+GT+++L K+VG
Sbjct: 68 DFEKLRSSIAE---FKPEIVFHMAAQPLVRLSYE-QPIKTYSTNVMGTVHLLETVKQVGN 123
Query: 224 -RFLLTSTSEVYGDPLQHPQKETYWG--NVNPIGTY 256
+ ++ TS+ D +E WG P+G Y
Sbjct: 124 IKAVVNITSDKCYD-----NREWVWGYRENEPMGGY 154
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 19/151 (12%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV--MHHFGNPNFELIRHDVVEP 176
I+VTGGAG++GSH L+A G V++ DN ++E + + DV +
Sbjct: 8 ILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDE 67
Query: 177 LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLG------------LAKRVGAR 224
L +I+ + +H F +K + +V + + +R R
Sbjct: 68 RALA--RIFDAHPITAAIH--FAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKR 123
Query: 225 FLLTSTSEVYGDPLQHPQKETY-WGNVNPIG 254
+ +S++ VYG P + P ET+ NP G
Sbjct: 124 IVFSSSATVYGVPERSPIDETFPLSATNPYG 154
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 26/148 (17%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVV----DNFFTGRKENVMHHFGNP------NFELI 169
++TG G GS+L + L+ +G V + +F TGR E H + NP N +L
Sbjct: 28 LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIE---HLYKNPQAHIEGNMKLH 84
Query: 170 RHDVVEPLLL-----EVD--QIYHLACPASPVHYKFNPVK-TIKTNVVGTLNMLGLAKRV 221
D+ + L EV +IY+L S V F+ + T + VGTL +L K
Sbjct: 85 YGDLTDSTCLVKIINEVKPTEIYNLGAQ-SHVKISFDLAEYTADVDGVGTLRLLDAVKTC 143
Query: 222 G----ARFLLTSTSEVYGDPLQHPQKET 245
G +F STSE+YG + PQKET
Sbjct: 144 GLINSVKFYQASTSELYGKVQEIPQKET 171
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+ L+I +TG GF+ SH+ RL G VI D + E++ F L+ V+
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 175 EPLLL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 229
E L VD +++LA + + + N + N + + NM+ A+ G RF S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 230 TSEVY 234
++ +Y
Sbjct: 145 SACIY 149
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+ L+I +TG GF+ SH+ RL G VI D + E++ F L+ V+
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 175 EPLLL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 229
E L VD +++LA + + + N + N + + NM+ A+ G RF S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 230 TSEVY 234
++ +Y
Sbjct: 145 SACIY 149
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+ L+I +TG GF+ SH+ RL G VI D + E++ F L+ V+
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 175 EPLLL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 229
E L VD +++LA + + + N + N + + NM+ A+ G RF S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 230 TSEVY 234
++ +Y
Sbjct: 145 SACIY 149
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+ L+I +TG GF+ SH+ RL G VI D + E++ F L+ V+
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 175 EPLLL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 229
E L VD +++LA + + + N + N + + NM+ A+ G RF S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 230 TSEVY 234
++ +Y
Sbjct: 145 SACIY 149
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 119 IVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRK------ENVMHHFGNPNFELIRH 171
I+VTGGAGF+GS++V L +G ++VVDN G K N+ + +F LI+
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDF-LIQI 60
Query: 172 DVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231
E +V+ I+H +S + + + N + +L FL S++
Sbjct: 61 MAGEE-FGDVEAIFHEGAXSSTTEW--DGKYMMDNNYQYSKELLHYCLEREIPFLYASSA 117
Query: 232 EVYG 235
YG
Sbjct: 118 ATYG 121
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 119 IVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRK------ENVMHHFGNPNFELIRH 171
I+VTGGAGF+GS++V L +G ++VVDN G K N+ + +F LI+
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDF-LIQI 107
Query: 172 DVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231
E +V+ I+H +S + + + N + +L FL S++
Sbjct: 108 MAGEE-FGDVEAIFHEGACSSTTEW--DGKYMMDNNYQYSKELLHYCLEREIPFLYASSA 164
Query: 232 EVYG 235
YG
Sbjct: 165 ATYG 168
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 28/149 (18%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFF-TGRKENVMHHFGNPNFELIRHDVV 174
+R++V GGAG++GSH V L+ + SV++VD+ T K + + N +L + D
Sbjct: 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGP 62
Query: 175 EP------LLLEV-------------------DQIYHLACPASPVHYKFNPVKTIKTNVV 209
+P LEV D + H+ + +P+K NVV
Sbjct: 63 KPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVV 122
Query: 210 GTLNML-GLAKRVGARFLLTSTSEVYGDP 237
G L +L + + + +S++ ++G+P
Sbjct: 123 GILRLLQAMLLHKCDKIIFSSSAAIFGNP 151
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 20/144 (13%)
Query: 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD----NFFTGRKENVMHHFGNPN-FELIR 170
G R ++TG G G++L L+ +G V D F + R + G N ++I
Sbjct: 3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWR----LKELGIENDVKIIH 58
Query: 171 HDVVE-------PLLLEVDQIYHLACPASPVHYKFN-PVKTIKTNVVGTLNMLGLAKRV- 221
D++E ++ D++Y+LA S V F P+ T + + +G L +L + V
Sbjct: 59 MDLLEFSNIIRTIEKVQPDEVYNLAA-QSFVGVSFEQPILTAEVDAIGVLRILEALRTVK 117
Query: 222 -GARFLLTSTSEVYGDPLQHPQKE 244
+F STSE++G + PQ E
Sbjct: 118 PDTKFYQASTSEMFGKVQEIPQTE 141
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 18/134 (13%)
Query: 109 PLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSV--IVVDNFFTGRKENVMHHFGNPNF 166
P+G K V GG GFV S LV L+ +G +V V D + +++ +
Sbjct: 6 PIGKKTA----CVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDL 61
Query: 167 ELIRHDVVEPLLLE-----VDQIYHLACPASPVHYKFNPVKT--IKTNVVGTLNMLGLAK 219
++ R D+ + L E D ++H+ A+PVH+ + IK + G +N++
Sbjct: 62 KIFRADLTDELSFEAPIAGCDFVFHV---ATPVHFASEDPENDMIKPAIQGVVNVMKACT 118
Query: 220 RVGA--RFLLTSTS 231
R + R +LTS++
Sbjct: 119 RAKSVKRVILTSSA 132
>pdb|1BDB|A Chain A, Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase From
Pseudomonas Sp. Lb400
Length = 277
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
+K KG +++TGGA +G LVDR +A G V V+D
Sbjct: 1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLD 36
>pdb|2Y93|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain
B-356.
pdb|2Y93|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain
B-356.
pdb|2Y99|A Chain A, Crystal Structure Of
Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase
(Bphb)from Pandoraea Pnomenusa Strain B-356 Complex With
Co-Enzyme Nad
pdb|2Y99|B Chain B, Crystal Structure Of
Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase
(Bphb)from Pandoraea Pnomenusa Strain B-356 Complex With
Co-Enzyme Nad
pdb|3ZV3|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain B-
356 In Intermediate State Of Substrate Binding Loop
pdb|3ZV3|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain B-
356 In Intermediate State Of Substrate Binding Loop
pdb|3ZV4|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 In Apo Form At 1.8 Angstrom
pdb|3ZV4|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 In Apo Form At 1.8 Angstrom
pdb|3ZV5|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product 2,3-
Dihydroxybiphenyl
pdb|3ZV5|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product 2,3-
Dihydroxybiphenyl
pdb|3ZV6|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product Analog 4,4'-
Dihydroxybiphenyl
pdb|3ZV6|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product Analog 4,4'-
Dihydroxybiphenyl
Length = 281
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN 163
+K G ++TGGA +G LVDR +A G V V+D +E + H GN
Sbjct: 1 MKLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGN 52
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSV-IVVDNFFTGRKENVMHHFGNPNFELIRHDV--VE 175
I++TGG G G V +++ ++ I+V + ++ + F +P DV +E
Sbjct: 24 ILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLE 83
Query: 176 PL---LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 232
L L VD H A ++NP++ IKTN++G N++ + ++ +++
Sbjct: 84 RLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTD 143
Query: 233 VYGDPLQ 239
+P+
Sbjct: 144 KAANPIN 150
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 24/152 (15%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV------------MHHFGNPN 165
R+ VTGG GF+GS ++ L+ G SV RK +V +H F N
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFF---N 59
Query: 166 FELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTI--KTNVVGTLNMLGLA--KRV 221
+L D + I+H ASP+ + + + I K V G L +L +
Sbjct: 60 ADLSNPDSFAAAIEGCVGIFH---TASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKT 116
Query: 222 GARFLLTSTSEV--YGDPLQHPQKETYWGNVN 251
RF+ TS+ + + E+ W +V+
Sbjct: 117 VKRFIYTSSGSAVSFNGKDKDVLDESDWSDVD 148
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 19/127 (14%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFE----LIRHDVV 174
+ VTG +GF+GS LV RL+ RG +V T K+ V H P E L + D+
Sbjct: 8 VCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKK-VKHLLDLPKAETHLTLWKADLA 66
Query: 175 EPLLLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-----R 224
+ + ++H+A P K + IK + G MLG+ K A R
Sbjct: 67 DEGSFDEAIKGCTGVFHVATPMD-FESKDPENEVIKPTIEG---MLGIMKSCAAAKTVRR 122
Query: 225 FLLTSTS 231
+ TS++
Sbjct: 123 LVFTSSA 129
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
R++VTG AG VGS + L V + D G E H +L V L
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEA---HEEIVACDLADAQAVHDL 60
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYG 235
+ + D I HL V +N + ++ N++G N+ A+ +G R + S++ G
Sbjct: 61 VKDCDGIIHLG--GVSVERPWNDI--LQANIIGAYNLYEAARNLGKPRIVFASSNHTIG 115
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 62/150 (41%), Gaps = 29/150 (19%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSV--------IVVDNFFTGRKENVMH------H 160
+G R+ VTG GF G L L G +V V F T R + M
Sbjct: 8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIR 67
Query: 161 FGNPNFELIRHDVVEPLLLEVDQIYHLAC-PASPVHYKFNPVKTIKTNVVGTLNMLGLAK 219
N E IR + + ++H+A P + Y PV+T TNV+GT+ +L +
Sbjct: 68 DQNKLLESIRE-------FQPEIVFHMAAQPLVRLSYS-EPVETYSTNVMGTVYLLEAIR 119
Query: 220 RVGA-RFLLTSTSEVYGDPLQHPQKETYWG 248
VG + ++ TS+ D KE WG
Sbjct: 120 HVGGVKAVVNITSDKCYD-----NKEWIWG 144
>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
Length = 369
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 24/84 (28%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRH---DV 173
+ IV+TG GFVG +L L + D HH FE+ R +
Sbjct: 1 MNIVITGAKGFVGKNLKADLTSTTD-----------------HHI----FEVHRQTKEEE 39
Query: 174 VEPLLLEVDQIYHLACPASPVHYK 197
+E LL+ D I HLA P H K
Sbjct: 40 LESALLKADFIVHLAGVNRPEHDK 63
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 25/142 (17%)
Query: 106 GKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLI---------ARGDSVIV-----VDNFFT 151
KI + +G ++VTG GFV SH+V++L+ AR S + D +
Sbjct: 1 AKIDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYP 60
Query: 152 GRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGT 211
GR E + ++++ + ++ + H+A S K++ V + + GT
Sbjct: 61 GRFETAVVE------DMLKQGAYDEVIKGAAGVAHIASVVS-FSNKYDEV--VTPAIGGT 111
Query: 212 LNMLGLAKRVGA--RFLLTSTS 231
LN L A + RF+LTS++
Sbjct: 112 LNALRAAAATPSVKRFVLTSST 133
>pdb|1SO8|A Chain A, Abeta-bound Human Abad Structure [also Known As
3-hydroxyacyl-coa Dehydrogenase Type Ii (type Ii Hadh),
Endoplasmic Reticulum- Associated Amyloid Beta-peptide
Binding Protein (erab)]
Length = 261
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
KGL V+TGGA +G +RL+ +G S +++D
Sbjct: 9 KGLVAVITGGASGLGLATAERLVGQGASAVLLD 41
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
L+I VTGG GF+G ++V+ + G++ I++ G K + + ++ L D++
Sbjct: 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSI-GNKAINDYEYRVSDYTL--EDLINQ 59
Query: 177 LLLEVDQIYHLAC 189
L +VD + HLA
Sbjct: 60 -LNDVDAVVHLAA 71
>pdb|2O23|A Chain A, The Structure Of Wild-Type Human Hadh2
(17beta-Hydroxysteroid Dehydrogenase Type 10) Bound To
Nad+ At 1.2 A
pdb|2O23|B Chain B, The Structure Of Wild-Type Human Hadh2
(17beta-Hydroxysteroid Dehydrogenase Type 10) Bound To
Nad+ At 1.2 A
Length = 265
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
KGL V+TGGA +G +RL+ +G S +++D
Sbjct: 11 KGLVAVITGGASGLGLATAERLVGQGASAVLLD 43
>pdb|1U7T|A Chain A, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
pdb|1U7T|B Chain B, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
pdb|1U7T|C Chain C, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
pdb|1U7T|D Chain D, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
Length = 261
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
KGL V+TGGA +G +RL+ +G S +++D
Sbjct: 9 KGLVAVITGGASGLGLATAERLVGQGASAVLLD 41
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
+ KG ++ G AGF GS L +RL + G V++VD
Sbjct: 26 ESKGFDYLIVG-AGFAGSVLAERLASSGQRVLIVD 59
>pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
pdb|3VHR|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus In Space Group
C2221
Length = 369
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 24/82 (29%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRH---DVVE 175
IV+TG GFVG +L L + D HH FE+ R + +E
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTD-----------------HHI----FEVHRQTKEEELE 41
Query: 176 PLLLEVDQIYHLACPASPVHYK 197
LL+ D I HLA P H K
Sbjct: 42 SALLKADFIVHLAGVNRPEHDK 63
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
R++V GG GF+G+ L L ARG V +V
Sbjct: 2 RVLVGGGTGFIGTALTQLLNARGHEVTLVS 31
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 106 GKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARG 140
KI + +G ++VTG GFV SH+V++L+ G
Sbjct: 1 AKIDNAVLPEGSLVLVTGANGFVASHVVEQLLEHG 35
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
I+VTG +G +G+ LV L + V+ + R + ++ D ++ +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFI---TLDVSNRDEIDRAV 58
Query: 179 LE--VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK--RVGARFLLTSTSEVY 234
+ +D I+HLA S K +P K N+ GT N+L AK RV + ++ ST V+
Sbjct: 59 EKYSIDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRV-EKVVIPSTIGVF 116
Query: 235 G 235
G
Sbjct: 117 G 117
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
I+VTG +G +G+ LV L + V+ + R + ++ D ++ +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFI---TLDVSNRDEIDRAV 58
Query: 179 LE--VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK--RVGARFLLTSTSEVY 234
+ +D I+HLA S K +P K N+ GT N+L AK RV + ++ ST V+
Sbjct: 59 EKYSIDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRV-EKVVIPSTIGVF 116
Query: 235 G 235
G
Sbjct: 117 G 117
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+ +RI+VTGG+G VG + +++A G + D F K+ +L
Sbjct: 5 QSMRILVTGGSGLVGK-AIQKVVADGAGLPGEDWVFVSSKDA----------DLTDTAQT 53
Query: 175 EPLLLEVD--QIYHLACPASPV--HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230
L +V + HLA + + K+N + + NV N+L A VGAR +++
Sbjct: 54 RALFEKVQPTHVIHLAAMVGGLFRNIKYN-LDFWRKNVHMNDNVLHSAFEVGARKVVSCL 112
Query: 231 SE-VYGDPLQHPQKET 245
S ++ D +P ET
Sbjct: 113 STCIFPDKTTYPIDET 128
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+ +RI+VTGG+G VG + +++A G + D F K+ +L
Sbjct: 6 QSMRILVTGGSGLVGK-AIQKVVADGAGLPGEDWVFVSSKDA----------DLTDTAQT 54
Query: 175 EPLLLEVD--QIYHLACPASPV--HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230
L +V + HLA + + K+N + + NV N+L A VGAR +++
Sbjct: 55 RALFEKVQPTHVIHLAAMVGGLFRNIKYN-LDFWRKNVHMNDNVLHSAFEVGARKVVSCL 113
Query: 231 SE-VYGDPLQHPQKET 245
S ++ D +P ET
Sbjct: 114 STCIFPDKTTYPIDET 129
>pdb|1E3S|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3S|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3S|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3S|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3W|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
pdb|1E3W|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
pdb|1E3W|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
Length = 261
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
KGL V+TGGA +G RL+ +G + +++D
Sbjct: 9 KGLVAVITGGASGLGLSTAKRLVGQGATAVLLD 41
>pdb|1E3W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
Length = 261
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
KGL V+TGGA +G RL+ +G + +++D
Sbjct: 9 KGLVAVITGGASGLGLSTAKRLVGQGATAVLLD 41
>pdb|1E6W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
pdb|1E6W|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
pdb|1E6W|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
pdb|1E6W|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
Length = 260
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
KGL V+TGGA +G RL+ +G + +++D
Sbjct: 8 KGLVAVITGGASGLGLSTAKRLVGQGATAVLLD 40
>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Acetate
pdb|1PJ6|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Folic Acid
pdb|1PJ7|A Chain A, Structure Of Dimethylglycine Oxidase Of Arthrobacter
Globiformis In Complex With Folinic Acid
Length = 830
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARG-DSVIVVDN 148
RIV+ G AG VG++L D L+ RG +++ V+D
Sbjct: 6 RIVIIG-AGIVGTNLADELVTRGWNNITVLDQ 36
>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant
Of Arthrobacter Globiformis In Complex With
Tetrahydrofolate
Length = 827
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARG-DSVIVVDN 148
RIV+ G AG VG++L D L+ RG +++ V+D
Sbjct: 3 RIVIIG-AGIVGTNLADELVTRGWNNITVLDQ 33
>pdb|3PPI|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Type-2 From Mycobacterium Avium
pdb|3PPI|B Chain B, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Type-2 From Mycobacterium Avium
pdb|3PPI|C Chain C, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Type-2 From Mycobacterium Avium
pdb|3PPI|D Chain D, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Type-2 From Mycobacterium Avium
Length = 281
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
+G +V+GGAG +G V RL A G V++ D
Sbjct: 29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIAD 61
>pdb|3GED|A Chain A, Fingerprint And Structural Analysis Of A Apo Scor Enzyme
From Clostridium Thermocellum
pdb|3GED|B Chain B, Fingerprint And Structural Analysis Of A Apo Scor Enzyme
From Clostridium Thermocellum
pdb|3GEG|A Chain A, Fingerprint And Structural Analysis Of A Scor Enzyme With
Its Bound Cofactor From Clostridium Thermocellum
pdb|3GEG|B Chain B, Fingerprint And Structural Analysis Of A Scor Enzyme With
Its Bound Cofactor From Clostridium Thermocellum
Length = 247
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
++VTGG +G + + GD V +D K + PN DV +PL
Sbjct: 5 VIVTGGGHGIGKQICLDFLEAGDKVCFID---IDEKRSADFAKERPNLFYFHGDVADPLT 61
Query: 179 LE 180
L+
Sbjct: 62 LK 63
>pdb|3UU9|A Chain A, Structure Of The Free Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase
pdb|3UU9|B Chain B, Structure Of The Free Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase
Length = 520
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 238 LQHPQKETYWGNVN 251
LQHP+ ET+WG+V+
Sbjct: 355 LQHPEAETFWGSVH 368
>pdb|3SCE|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase With A Covalent Bond
Between The Ce1 Atom Of Tyr303 And The Cg Atom Of Gln360
(Tvnirb)
pdb|3SCE|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase With A Covalent Bond
Between The Ce1 Atom Of Tyr303 And The Cg Atom Of Gln360
(Tvnirb)
pdb|3S7W|A Chain A, Structure Of The Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase With An
Oxidized Gln360 In A Complex With Hydroxylamine
pdb|3S7W|B Chain B, Structure Of The Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase With An
Oxidized Gln360 In A Complex With Hydroxylamine
pdb|3OWM|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With
Hydroxylamine
pdb|3OWM|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With
Hydroxylamine
Length = 519
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 238 LQHPQKETYWGNVN 251
LQHP+ ET+WG+V+
Sbjct: 355 LQHPEAETFWGSVH 368
>pdb|3RKH|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
(Full Occupancy)
pdb|3RKH|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
(Full Occupancy)
Length = 520
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 238 LQHPQKETYWGNVN 251
LQHP+ ET+WG+V+
Sbjct: 355 LQHPEAETFWGSVH 368
>pdb|2OT4|A Chain A, Structure Of A Hexameric Multiheme C Nitrite Reductase
From The Extremophile Bacterium Thiolkalivibrio
Nitratireducens
pdb|2OT4|B Chain B, Structure Of A Hexameric Multiheme C Nitrite Reductase
From The Extremophile Bacterium Thiolkalivibrio
Nitratireducens
Length = 525
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 238 LQHPQKETYWGNVN 251
LQHP+ ET+WG+V+
Sbjct: 359 LQHPEAETFWGSVH 372
>pdb|3F29|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
pdb|3F29|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
pdb|2ZO5|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Azide
pdb|2ZO5|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Azide
pdb|3D1I|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
pdb|3D1I|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
pdb|3GM6|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Phosphate
pdb|3GM6|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Phosphate
pdb|3FO3|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Dithionite (Sulfite Complex)
pdb|3FO3|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Dithionite (Sulfite Complex)
pdb|3MMO|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Cyanide
pdb|3MMO|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Cyanide
pdb|3LG1|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Borohydride (In Complex With Sulfite)
pdb|3LG1|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Borohydride (In Complex With Sulfite)
pdb|3LGQ|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
(Modified Tyr-303)
pdb|3LGQ|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
(Modified Tyr-303)
Length = 525
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 238 LQHPQKETYWGNVN 251
LQHP+ ET+WG+V+
Sbjct: 359 LQHPEAETFWGSVH 372
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 19/87 (21%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMH----HFGNPNFELIRHDV 173
+IV+ G +GFVGS L++ + RG V V V H N + ++ + DV
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTAV----------VRHPEKIKIENEHLKVKKADV 55
Query: 174 VEPLLLEVDQIYHLACPASPVHYKFNP 200
+D++ + A V FNP
Sbjct: 56 S-----SLDEVCEVCKGADAVISAFNP 77
>pdb|3KB1|A Chain A, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
pdb|3KB1|B Chain B, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
Length = 262
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 112 LKRKGLRIVVTGGAGFVGSHLVDRLIA-----RGDSVIVVDNFFTGRKENVMHHFGNPNF 166
L + G RI V G G VG V L+A +G V ++D F G ++ H FG
Sbjct: 14 LDKIGFRIAVXSGKGGVGKSTVTALLAVHYAKQGKKVGILDADFLG--PSIPHLFGLEKG 71
Query: 167 EL-IRHDVVEPLLLE 180
++ + + +EP+L +
Sbjct: 72 KVAVSDEGLEPVLTQ 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,754,794
Number of Sequences: 62578
Number of extensions: 373493
Number of successful extensions: 969
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 100
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)