BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022900
(290 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2
SV=2
Length = 418
Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/137 (74%), Positives = 114/137 (83%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 88 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 147
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 148 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 207
Query: 238 LQHPQKETYWGNVNPIG 254
HPQ E YWG+VNPIG
Sbjct: 208 EVHPQNEDYWGHVNPIG 224
>sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1
SV=1
Length = 420
Score = 219 bits (557), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/137 (74%), Positives = 114/137 (83%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIG 254
HPQ E YWG+VNPIG
Sbjct: 210 EVHPQSEDYWGHVNPIG 226
>sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1
PE=2 SV=1
Length = 421
Score = 219 bits (557), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/137 (74%), Positives = 114/137 (83%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 91 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 150
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 151 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 210
Query: 238 LQHPQKETYWGNVNPIG 254
HPQ E YWG+VNPIG
Sbjct: 211 EVHPQSEEYWGHVNPIG 227
>sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2
SV=1
Length = 420
Score = 219 bits (557), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/137 (74%), Positives = 114/137 (83%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIG 254
HPQ E YWG+VNPIG
Sbjct: 210 EVHPQSEDYWGHVNPIG 226
>sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2
SV=1
Length = 420
Score = 219 bits (557), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/137 (74%), Positives = 114/137 (83%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIG 254
HPQ E YWG+VNPIG
Sbjct: 210 EVHPQSEDYWGHVNPIG 226
>sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1
PE=1 SV=1
Length = 420
Score = 218 bits (556), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 102/137 (74%), Positives = 114/137 (83%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIG 254
HPQ E YWG+VNPIG
Sbjct: 210 EVHPQSEDYWGHVNPIG 226
>sp|A0R5C5|GALE_MYCS2 UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2
Length = 313
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 10/148 (6%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+R +VTG AGF+GS LVDRL+A G V+ +D+ +GR EN+ + FE ++ D+V+
Sbjct: 1 MRTLVTGAAGFIGSTLVDRLLADGHGVVGLDDLSSGRAENLHSAENSDKFEFVKADIVDA 60
Query: 177 ----LLLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230
LL E + I+HLA S +P NVVGT+ + A+ G R ++ ++
Sbjct: 61 DLTGLLAEFKPEVIFHLAAQISVKRSVDDPPFDATVNVVGTVRLAEAARLAGVRKVVHTS 120
Query: 231 S--EVYGDPLQHPQKETYWGNVNPIGTY 256
S VYG P +P E VNP Y
Sbjct: 121 SGGSVYGTPPAYPTSEDM--PVNPASPY 146
>sp|Q6MWV3|GALE_MYCTU UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis GN=galE1 PE=3
SV=1
Length = 314
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 74/137 (54%), Gaps = 8/137 (5%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+R +VTG AGF+GS LVDRL+A G SV+ +DNF TGR N+ H N + D+V
Sbjct: 1 MRALVTGAAGFIGSTLVDRLLADGHSVVGLDNFATGRATNLEHLADNSAHVFVEADIVTA 60
Query: 177 LLLEV------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230
L + + ++HLA +P NV+GT+ + A++ G R ++ ++
Sbjct: 61 DLHAILEQHRPEVVFHLAAQIDVRRSVADPQFDAAVNVIGTVRLAEAARQTGVRKIVHTS 120
Query: 231 S--EVYGDPLQHPQKET 245
S +YG P ++P ET
Sbjct: 121 SGGSIYGTPPEYPTPET 137
>sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0211 PE=3 SV=1
Length = 305
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 15/149 (10%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
I+VTGGAGF+GSH+VD+LI VI++DN TG K N+ NP E + D+ + L
Sbjct: 2 ILVTGGAGFIGSHIVDKLIENNYDVIILDNLTTGNKNNI-----NPKAEFVNADIRDKDL 56
Query: 179 LE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR--VGARFLLTST 230
E V+ + H A + + NPV NV+GT+N+L + ++ + +S
Sbjct: 57 DEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASSG 116
Query: 231 SEVYGDPLQHPQKETYWGNVNPIGTYFFS 259
VYG+P P E + +NP+ Y S
Sbjct: 117 GAVYGEPNYLPVDENH--PINPLSPYGLS 143
>sp|O84903|GALE_LACCA UDP-glucose 4-epimerase OS=Lactobacillus casei GN=galE PE=3 SV=1
Length = 331
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 13/137 (9%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+ I V GGAG++GSH V +L+A G+ V+V+DN TG ++ V +P + D+ +
Sbjct: 1 MTIAVLGGAGYIGSHTVKQLLAAGEDVVVLDNLITGHRKAV-----DPRARFYQGDIRDY 55
Query: 177 LLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLT 228
L ++D I H A + +P+K N G + +L + G + + +
Sbjct: 56 HFLSQVFSQEKIDGIVHFAAFSIVPESMKDPLKYFDNNTGGMITLLEAMNQFGIKKIVFS 115
Query: 229 STSEVYGDPLQHPQKET 245
ST+ YG+P Q P KET
Sbjct: 116 STAATYGEPKQVPIKET 132
>sp|P21977|GALE_STRTR UDP-glucose 4-epimerase OS=Streptococcus thermophilus GN=galE PE=3
SV=1
Length = 332
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE 175
+ I+V GGAG++GSH+VDRL+ +G + V+VVD+ TG + V +L D +
Sbjct: 1 MAILVLGGAGYIGSHMVDRLVEKGQEKVVVVDSLVTGHRAAVHPDAIFYQGDLSDQDFMR 60
Query: 176 PLLLE---VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL-TSTS 231
+ E VD + H A + P+K N G + +L + G ++++ +ST+
Sbjct: 61 KVFKENPDVDAVIHFAAYSLVGESMEKPLKYFDNNTAGMVKLLEVMNECGVKYIVFSSTA 120
Query: 232 EVYGDPLQHPQKETYWGN-VNPIGTYFFSFSLIFLVFISQFRPSRKACRFFILLYRNGA 289
YG P + P ET N +NP G S + + I ++ ++ L Y N A
Sbjct: 121 ATYGIPEEIPILETTPQNPINPYGE-----SKLMMETIMKWSDQAYGIKYVPLRYFNVA 174
>sp|O06329|RMLB_MYCTU dTDP-glucose 4,6-dehydratase OS=Mycobacterium tuberculosis GN=rmlB
PE=1 SV=1
Length = 331
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 10/128 (7%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDV 173
+R++VTGGAGF+G++ V + D+V V+D + GR+E++ L++ D+
Sbjct: 1 MRLLVTGGAGFIGTNFVHSAVREHPDDAVTVLDALTYAGRRESLAD--VEDAIRLVQGDI 58
Query: 174 -----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 228
V L+ E D + H A + + NP + TNV+GT +L +R G R
Sbjct: 59 TDAELVSQLVAESDAVVHFAAESHVDNALDNPEPFLHTNVIGTFTILEAVRRHGVRLHHI 118
Query: 229 STSEVYGD 236
ST EVYGD
Sbjct: 119 STDEVYGD 126
>sp|P04397|GAL10_YEAST Bifunctional protein GAL10 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GAL10 PE=1 SV=2
Length = 699
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 18/184 (9%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM-------HHFGNPNFELIRH 171
++VTGGAG++GSH V LI G +V DN ++V HH +L
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDR 73
Query: 172 DVVEPLLLE--VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLT 228
+E + E +D + H A + P++ N++GT+ +L L ++ ++F+ +
Sbjct: 74 KGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFS 133
Query: 229 STSEVYGDPLQHPQ-----KETYWGNVNPIGTYFFSFSLIFLVFISQFRPSRKACRFFIL 283
S++ VYGD + P +E G NP G ++ I + +K+ +F IL
Sbjct: 134 SSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDL---YNSDKKSWKFAIL 190
Query: 284 LYRN 287
Y N
Sbjct: 191 RYFN 194
>sp|P14169|RFBE_SALTI CDP-paratose 2-epimerase OS=Salmonella typhi GN=rfbE PE=1 SV=2
Length = 338
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 10/139 (7%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN-PNFELIRHDV-- 173
+++++TGG GF+GS+L +++G +IV DN + +H + NFE + D+
Sbjct: 1 MKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 60
Query: 174 ---VEPLLLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFL 226
V L+ + D +HLA + NP + NV GTLN+L ++ + +
Sbjct: 61 KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNII 120
Query: 227 LTSTSEVYGDPLQHPQKET 245
+ST++VYGD Q+ ET
Sbjct: 121 YSSTNKVYGDLEQYKYNET 139
>sp|Q7WTB1|GALE_LACHE UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2
SV=1
Length = 330
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 86/181 (47%), Gaps = 17/181 (9%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
++++V GGAG++GSH V L+ G+ V+V+D +TG ++ V +P + + D+ +
Sbjct: 1 MKVLVIGGAGYIGSHAVRELVKEGNDVLVLDALYTGHRKAV-----DPKAKFYQGDIEDT 55
Query: 177 LLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL-T 228
L+ ++D + H A + P+K NV G +++L ++L+ +
Sbjct: 56 FLVSKILRDEKIDAVMHFAAYSLVPESVKKPLKYYDNNVTGMISLLQAMNDANVKYLVFS 115
Query: 229 STSEVYGDPLQHPQKETYWGNVNPIGTYFFSFSLIFLVFISQFRPSRKACRFFILLYRNG 288
S++ YG P + P E +NPI Y + + + I + ++ L Y N
Sbjct: 116 SSAATYGIPKKLPITEDT--PLNPINPY--GETKMMMEKIMAWADKADGIKYTALRYFNV 171
Query: 289 A 289
A
Sbjct: 172 A 172
>sp|P24325|GALE_HAEIN UDP-glucose 4-epimerase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=galE PE=3 SV=2
Length = 338
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 12/160 (7%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV--MHHFGNPNFELIRHDVV 174
+ I+VTGGAG++GSH V L+ G V+V+DN +++ + + D++
Sbjct: 1 MAILVTGGAGYIGSHTVVELLNVGKEVVVLDNLCNSSPKSLERVKQITGKEAKFYEGDIL 60
Query: 175 EPLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFL 226
+ LL E++ + H A + P + NV GTL ++ K+ G F+
Sbjct: 61 DRALLQKIFAENEINSVIHFAGLKAVGESVQKPTEYYMNNVAGTLVLIQEMKKAGVWNFV 120
Query: 227 LTSTSEVYGDPLQHPQKETYW--GNVNPIGTYFFSFSLIF 264
+S++ VYGDP P E G NP GT + I
Sbjct: 121 FSSSATVYGDPKIIPITEDCEVGGTTNPYGTSKYMVEQIL 160
>sp|P96995|GALE_STRMU UDP-glucose 4-epimerase OS=Streptococcus mutans serotype c (strain
ATCC 700610 / UA159) GN=galE PE=3 SV=2
Length = 333
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 21/184 (11%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE 175
+ I+V GGAG++GSH+VDRLI +G + V+VVD+ TG + V +P + + D+ +
Sbjct: 1 MAILVLGGAGYIGSHMVDRLIEKGEEEVVVVDSLVTGHRAAV-----HPAAKFYQGDLAD 55
Query: 176 PLLL--------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 227
+ +VD + H A + P+K N G + +L + G ++++
Sbjct: 56 REFMSMVFRENPDVDAVIHFAAYSLVAESMKKPLKYFDNNTAGMIKLLEVMSEFGVKYIV 115
Query: 228 -TSTSEVYGDPLQHPQKETYWGN-VNPIGTYFFSFSLIFLVFISQFRPSRKACRFFILLY 285
+ST+ YG P + P KET +NP G S + + I ++ +F L Y
Sbjct: 116 FSSTAATYGIPDEIPIKETTPQRPINPYGE-----SKLMMETIMKWSDRAYGIKFVPLRY 170
Query: 286 RNGA 289
N A
Sbjct: 171 FNVA 174
>sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044
/ CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2
Length = 320
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 24/138 (17%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGD--------SVIVVDNF-FTGRKENVMHHFGNPNFE 167
++I+VTGGAGF+GSH V LI+ GD V VVD + G N+ +P F
Sbjct: 1 MKILVTGGAGFIGSHFVTSLIS-GDIATPQPVTQVTVVDKLGYGGNLRNLAEASADPRFS 59
Query: 168 LIRHDV-----VEPLLLEVDQIYHLACPASPVHYKFNPVKT---IKTNVVGTLNMLGLAK 219
+R D+ +E L+ D + H A+ H + V + + +N+VGT +L A
Sbjct: 60 FVRGDICDEGLIEGLMARHDTVAHF---AAETHVDRSVVASGPFVASNLVGTQVLLDAAL 116
Query: 220 R--VGARFLLTSTSEVYG 235
R +G RFL ST EVYG
Sbjct: 117 RHHIG-RFLHVSTDEVYG 133
>sp|P35673|GALE_ERWAM UDP-glucose 4-epimerase OS=Erwinia amylovora GN=galE PE=3 SV=1
Length = 337
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 15/179 (8%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDVV 174
+ I+VTGGAG++GSH V L+ RGD V+++DN +E N + D++
Sbjct: 1 MSILVTGGAGYIGSHTVLSLLQRGDDVVILDNLSNASRESINRVEKLTGKTATFFEGDLL 60
Query: 175 EPLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFL 226
+ L + + H A + P++ + NV GTL +L + G +F+
Sbjct: 61 DRSCLRSVFSAHRISAVIHFAGLKAVGASTRKPLEYYQNNVTGTLVLLEEMRSAGVNQFI 120
Query: 227 LTSTSEVYGDPLQHPQKETY--WGNVNPIGTYFFSFSLIFLVFISQFRPSRK--ACRFF 281
+S++ VYG P ET G +P GT I + ++ P K A R+F
Sbjct: 121 FSSSATVYGADAPVPYVETTPIGGTTSPYGTSKLMVEQILRDY-AKANPEFKTIALRYF 178
>sp|Q9LIS3|GAE6_ARATH UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1
SV=1
Length = 460
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 31/153 (20%)
Query: 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE 175
GL ++VTG AGFVGSH L RGD V+ DNF + + +P+ + R +++E
Sbjct: 111 GLSVLVTGAAGFVGSHCSLALRKRGDGVLGFDNF---------NDYYDPSLKRARQELLE 161
Query: 176 --------------PLLLEV------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNML 215
PLL ++ I HLA A + NP I +N+ G +N+L
Sbjct: 162 KQQVFIVEGDLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIASNIAGFVNLL 221
Query: 216 GLAKRVGAR--FLLTSTSEVYGDPLQHPQKETY 246
+AK + + S+S VYG ++P E +
Sbjct: 222 EVAKAANPQPAIVWASSSSVYGLNTENPFSEEH 254
>sp|Q9CNY5|GALE_PASMU UDP-glucose 4-epimerase OS=Pasteurella multocida (strain Pm70)
GN=galE PE=3 SV=1
Length = 338
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 12/160 (7%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV--MHHFGNPNFELIRHDVV 174
+ I+VTGGAG++GSH V L+ V+V+DN +++ + + + D++
Sbjct: 1 MAILVTGGAGYIGSHTVVELLNANKDVVVLDNLCNSSPKSLERVAQITGKQVKFYQGDIL 60
Query: 175 EPLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFL 226
+ LL ++ + H A + P + NV G+L ++ K+ G F+
Sbjct: 61 DTALLQKIFAENQIQSVIHFAGLKAVGESVQKPAEYYMNNVTGSLVLIQEMKKAGVWNFV 120
Query: 227 LTSTSEVYGDPLQHPQKET--YWGNVNPIGTYFFSFSLIF 264
+S++ VYGDP P E+ G NP GT F I
Sbjct: 121 FSSSATVYGDPEIIPITESCKVGGTTNPYGTSKFMVEQIL 160
>sp|Q9KDV3|GALE_BACHD UDP-glucose 4-epimerase OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=galE PE=3
SV=1
Length = 334
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK---ENVMHHFGNPNFELIRHDV 173
+ I+VTGGAG++GSH V L+ +G+ VIV+DN G +V + G+ IR D
Sbjct: 1 MAILVTGGAGYIGSHTVLFLLEQGEQVIVLDNLQKGHAGALSDVTFYHGD-----IRDDQ 55
Query: 174 VEPLLL---EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNML-GLAKRVGARFLLTS 229
+ + +D + H A + P++ + NV+GT +L + + + + +S
Sbjct: 56 LLDTIFTTHSIDTVIHFAANSLVGESVKQPIEYYENNVIGTHTLLKKMLEHDVKKIVFSS 115
Query: 230 TSEVYGDPLQHPQKET 245
T+ YG+P+Q P +E+
Sbjct: 116 TAATYGEPVQIPIQES 131
>sp|Q57301|GALE_YEREN UDP-glucose 4-epimerase OS=Yersinia enterocolitica GN=galE PE=3
SV=1
Length = 336
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 16/153 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG----NPNFELIRHD 172
+ I++TGGAG++GSH V L+ +G +V+V+DN E++ PNF D
Sbjct: 1 MSILITGGAGYIGSHTVLTLLEQGRNVVVLDNLINSSAESLARVSKICGRKPNF--YHGD 58
Query: 173 VVEPLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARF 225
+++ L ++D + H A S P++ + NVVG++ +L +
Sbjct: 59 ILDRSCLKLIFSSHKIDSVIHFAGLKSVGESVEKPIEYYQNNVVGSITLLEEMCLANVKK 118
Query: 226 LL-TSTSEVYGDPLQHP--QKETYWGNVNPIGT 255
L+ +S++ VYG+P P +K G NP GT
Sbjct: 119 LIFSSSATVYGEPEFVPLTEKARIGGTTNPYGT 151
>sp|P45602|GALE_KLEPN UDP-glucose 4-epimerase (Fragment) OS=Klebsiella pneumoniae GN=galE
PE=3 SV=1
Length = 139
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 10/139 (7%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDVV 174
++++VTGG+G++GSH +L+ RG V+++DN ++ V+ G I D+
Sbjct: 1 MKVLVTGGSGYIGSHTCVQLLQRGHEVVILDNLCNSKRRILPVIERLGGKEATFIEGDIR 60
Query: 175 -EPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E + E ++ + H A + P++ NV GTL ++ + G + F+
Sbjct: 61 NEARMTEILHDHAIEAVIHFAGLKAVGESVAKPLEYYDNNVTGTLKLVSAMRAAGVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKET 245
+S++ VYGD + P E+
Sbjct: 121 FSSSATVYGDQPKIPYVES 139
>sp|Q59083|EXOB_AZOBR UDP-glucose 4-epimerase OS=Azospirillum brasilense GN=exoB PE=3
SV=1
Length = 348
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
R++VTGGAG++GSH++ L G + +D+ GR+E + L+ D+
Sbjct: 10 RVLVTGGAGYIGSHVLHALTDAGIPAVTIDDLSAGRREAI-----PAAVPLVEGDIGSAE 64
Query: 178 LLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 229
LL+ VD + H A P+ + N +L +LG R G + + +S
Sbjct: 65 LLDRVMRDHRVDAVMHFAGSIVVPESVVKPLDYYRNNTANSLTLLGACLRAGIDKVVFSS 124
Query: 230 TSEVYGDPLQHPQKE 244
T+ VYG P P +E
Sbjct: 125 TAAVYGAPESVPIRE 139
>sp|P09147|GALE_ECOLI UDP-glucose 4-epimerase OS=Escherichia coli (strain K12) GN=galE
PE=1 SV=1
Length = 338
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 15/149 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGT 255
+S++ VYGD + P E++ P GT
Sbjct: 121 FSSSATVYGDQPKIPYVESF-----PTGT 144
>sp|P39858|CAPI_STAAU Protein CapI OS=Staphylococcus aureus GN=capI PE=3 SV=1
Length = 334
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 12/137 (8%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDN----FFTGRKENVMHHFGNPNF-----E 167
++I++TG AGF+GSHL +LI +G VI VD+ + KE+ + G NF +
Sbjct: 1 MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK 60
Query: 168 LIRHDVVEPLLLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARF 225
L +D + + ++ + + +LA A + NP I +N+VG +N+L ++ +
Sbjct: 61 LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN 120
Query: 226 LL-TSTSEVYGDPLQHP 241
L+ S+S VYG P
Sbjct: 121 LIYASSSSVYGANTSKP 137
>sp|Q9Y7X5|UGE1_SCHPO UDP-glucose 4-epimerase uge1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=uge1 PE=1 SV=1
Length = 355
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---VE 175
++VTGGAG++GSH L+ +G V++VDN R E V ++I H V E
Sbjct: 9 VLVTGGAGYIGSHTCVVLLEKGYDVVIVDNLCNSRVEAVHRIEKLTGKKVIFHQVDLLDE 68
Query: 176 PLLLEV------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLLT 228
P L +V + H A + P+ K N+ GT+N++ K+ R F+ +
Sbjct: 69 PALDKVFANQNISAVIHFAGLKAVGESVQVPLSYYKNNISGTINLIECMKKYNVRDFVFS 128
Query: 229 STSEVYGDPLQ 239
S++ VYGDP +
Sbjct: 129 SSATVYGDPTR 139
>sp|B4ETL7|ARNA_PROMH Bifunctional polymyxin resistance protein ArnA OS=Proteus mirabilis
(strain HI4320) GN=arnA PE=3 SV=1
Length = 660
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
Query: 102 VNSGGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF 161
V G K +KR+ R+++ G GF+G+HL +RL+ G+ I + + E +
Sbjct: 302 VRVGPKATAQVKRRQ-RVLILGVNGFIGNHLTERLLKDGNYDIYGMDIGSSAIERFI--- 357
Query: 162 GNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNML 215
GNP F I DV +E + + D I L A+P+ Y NP++ + + L ++
Sbjct: 358 GNPRFHFIEGDVSIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIV 417
Query: 216 GLAKRVGARFLLTSTSEVYG 235
+ R + STSEVYG
Sbjct: 418 RYCVKYNKRIIFPSTSEVYG 437
>sp|P37759|RMLB1_ECOLI dTDP-glucose 4,6-dehydratase 1 OS=Escherichia coli (strain K12)
GN=rfbB PE=3 SV=2
Length = 361
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 20/146 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVV 174
++I+VTGGAGF+GS +V +I DSV+ VD + G +E++ + + D+
Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNRESLADVSDSERYVFEHADIC 60
Query: 175 E-PLLLEV------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA--------- 218
+ P + + D + HLA + P I+TN+VGT +L A
Sbjct: 61 DAPAMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDS 120
Query: 219 -KRVGARFLLTSTSEVYGDPLQHPQK 243
K+ RF ST EVYGD L HP +
Sbjct: 121 DKKNSFRFHHISTDEVYGD-LPHPDE 145
>sp|Q553X7|GALE_DICDI UDP-glucose 4-epimerase OS=Dictyostelium discoideum GN=galE PE=1
SV=1
Length = 344
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 15/150 (10%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV--MHHFGNPNFELIRHDVVE 175
RI+VTGGAG++GSH V LI G + ++VDN E + + E D++
Sbjct: 7 RIMVTGGAGYIGSHTVIELIEAGYTPVIVDNLSNSSLEAIKRVESITGKEIEFHHVDIMN 66
Query: 176 PLLLEVDQIYHLACPASPVHY-------KFN--PVKTIKTNVVGTLNMLGLA-KRVGARF 225
L D+I+ S +H+ + N P+K N+ GTL +L L K +
Sbjct: 67 EKAL--DEIFETGNIRSVIHFAGLKAVGESNKLPLKYYNNNIAGTLTLLNLMDKHRVKKL 124
Query: 226 LLTSTSEVYGDPLQHPQKETY-WGNVNPIG 254
+ +S++ VYGDP P E + NP G
Sbjct: 125 VFSSSATVYGDPHTVPITEDFPLSATNPYG 154
>sp|P37777|RMLB_SHIFL dTDP-glucose 4,6-dehydratase OS=Shigella flexneri GN=rfbB PE=3 SV=2
Length = 361
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 20/146 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVV 174
++I+VTGGAGF+GS +V +I DSV+ VD + G E++ + + D+
Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYAFEHADIC 60
Query: 175 EPLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA--------- 218
+ + + + D + HLA + P I+TN+VGT +L A
Sbjct: 61 DAVAMSRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALND 120
Query: 219 -KRVGARFLLTSTSEVYGDPLQHPQK 243
K+ RF ST EVYGD L HP +
Sbjct: 121 EKKKSFRFHHISTDEVYGD-LPHPDE 145
>sp|Q9LPG6|RHM2_ARATH Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana
GN=RHM2 PE=1 SV=1
Length = 667
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 12/134 (8%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRH 171
K I++TG AGF+ SH+ +RLI ++V+D + +N+ F +PNF+ ++
Sbjct: 7 KPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSDLKNLDPSFSSPNFKFVKG 66
Query: 172 DVVEPLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA- 223
D+ L+ +D I H A + N + K N+ GT +L K G
Sbjct: 67 DIASDDLVNYLLITENIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQI 126
Query: 224 -RFLLTSTSEVYGD 236
RF+ ST EVYG+
Sbjct: 127 RRFIHVSTDEVYGE 140
>sp|P37761|RMLB_NEIGO dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3
SV=1
Length = 346
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 19/137 (13%)
Query: 119 IVVTGGAGFVGSHLVDRLIARG-DSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVEP 176
I+VTGGAGF+GS +V +I DSV+ +D + G E++ NP + + D+ +
Sbjct: 9 ILVTGGAGFIGSAVVRHIIQNTRDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICDR 68
Query: 177 LLLEV-------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA----------K 219
L+ D + HLA + + + I+TN+VGT ++L A K
Sbjct: 69 AELDRVFAQYRPDAVMHLAAESHVDRAIGSAGEFIRTNIVGTFDLLEAARAYWQQMPSEK 128
Query: 220 RVGARFLLTSTSEVYGD 236
R RF ST EVYGD
Sbjct: 129 REAFRFHHISTDEVYGD 145
>sp|A8FRR2|ARNA_SHESH Bifunctional polymyxin resistance protein ArnA OS=Shewanella
sediminis (strain HAW-EB3) GN=arnA PE=3 SV=1
Length = 660
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---- 173
++++ G GF+G+HL RL+ G I + + + E H +P+F + D+
Sbjct: 319 KVLIMGANGFIGNHLTKRLLDDGKYEIYAMDMSSSQIE---QHLSHPDFHFVEGDITIHN 375
Query: 174 --VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231
+E + + D + L A+P+ Y NP++ + + L ++ + R + STS
Sbjct: 376 EWIEYHIKKCDIVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRACVKYDKRIIFPSTS 435
Query: 232 EVYG 235
EVYG
Sbjct: 436 EVYG 439
>sp|Q9S642|RMLB_NEIMA dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=rfbB1 PE=3 SV=1
Length = 341
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 19/138 (13%)
Query: 118 RIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVE 175
+I+VTGGAGF+GS +V +I DSV+ +D + G E++ NP + + D+ +
Sbjct: 3 KILVTGGAGFIGSAVVRHIIRNTQDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICD 62
Query: 176 PLLLEV-------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA---------- 218
L+ D + HLA + + + I+TN+VGT N+L A
Sbjct: 63 RAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYRQQMPSE 122
Query: 219 KRVGARFLLTSTSEVYGD 236
K RF ST EVYGD
Sbjct: 123 KHEAFRFHHISTDEVYGD 140
>sp|Q59745|EXOB_RHILT UDP-glucose 4-epimerase OS=Rhizobium leguminosarum bv. trifolii
GN=exoB PE=3 SV=1
Length = 327
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 18/141 (12%)
Query: 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE 175
G ++V GGAG++GSH L +G +V DNF G +E V +G IR
Sbjct: 3 GETVLVVGGAGYIGSHTCLDLANKGYRPVVFDNFSNGHREFV--RWGPAEEGDIRDRA-- 58
Query: 176 PLLLEVDQIYHLACPASPVHYKF---------NPVKTIKTNVVGTLNMLGLAKRVGAR-F 225
+D++ PA+ +H+ +PV + NV+GTL +L A+ G F
Sbjct: 59 ----RLDEVLAKHKPAAILHFAALIEVGESVKDPVSFYENNVIGTLTLLSAAQAAGINAF 114
Query: 226 LLTSTSEVYGDPLQHPQKETY 246
+ +ST YG P P ET+
Sbjct: 115 VFSSTCATYGLPQSVPLDETH 135
>sp|P55293|RMLB_ECOLX dTDP-glucose 4,6-dehydratase OS=Escherichia coli GN=rfbB PE=1 SV=1
Length = 361
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVV 174
++I+VTGGAGF+GS +V +I DSV+ VD + G E++ + + D+
Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLAEISDSERYSFENADIC 60
Query: 175 EPL-------LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA--------- 218
+ ++D + HLA + P I+TN+VGT +L A
Sbjct: 61 DAEGDGLYFGQHQLDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSGLDD 120
Query: 219 -KRVGARFLLTSTSEVYGDPLQHPQK 243
K+ RF ST EVYGD L HP +
Sbjct: 121 EKKKNFRFHHISTDEVYGD-LPHPDE 145
>sp|Q8R059|GALE_MOUSE UDP-glucose 4-epimerase OS=Mus musculus GN=Gale PE=2 SV=1
Length = 347
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 19/165 (11%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTG-RKENVM-------HHFGNPNFELI 169
+++VTGGAG++GSH V L+ G S +V+DNF R E+ M + E
Sbjct: 3 KVLVTGGAGYIGSHTVLELLEAGYSPVVIDNFHNAIRGEDSMPESLRRVQELTGRSVEFE 62
Query: 170 RHDVVEPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
D+++ L+ + H A + P+ + N+ GT+ +L + + G
Sbjct: 63 EMDILDQAALQHLFKKHSFKAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMRAHG 122
Query: 223 ARFLL-TSTSEVYGDPLQHPQKETY--WGNVNPIG-TYFFSFSLI 263
+ L+ +S++ VYG+P P E + G NP G + FF +I
Sbjct: 123 VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMI 167
>sp|Q56093|GALE_SALTI UDP-glucose 4-epimerase OS=Salmonella typhi GN=galE PE=3 SV=2
Length = 338
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 15/149 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G V+++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 227
E L+ E +D + H A + P++ NV GTL ++ + + L+
Sbjct: 61 NEALITEILHDHAIDTVIHFAGLKAVGESVAKPLEYYDNNVNGTLRLVSAMRAANVKNLI 120
Query: 228 -TSTSEVYGDPLQHPQKETYWGNVNPIGT 255
+S++ VYGD + P E++ P GT
Sbjct: 121 FSSSATVYGDQPKIPYVESF-----PTGT 144
>sp|P55294|RMLB_NEIMB dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rfbB1 PE=3 SV=2
Length = 355
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 19/138 (13%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVE 175
+I+VTGGAGF+GS +V +I D+V+ VD + G E++ NP + + D+ +
Sbjct: 3 KILVTGGAGFIGSAVVRHIIRNTRDAVVNVDKLTYAGNLESLTEVADNPRYAFEQVDICD 62
Query: 176 PLLLEV-------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK--------- 219
L+ D + HLA + + + I+TN+VGT N+L A+
Sbjct: 63 RAELDRVFAQYRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYWQQMPSE 122
Query: 220 -RVGARFLLTSTSEVYGD 236
RF ST EVYGD
Sbjct: 123 QHEAFRFHHISTDEVYGD 140
>sp|P33119|GALE_CORDI UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=galE PE=3 SV=2
Length = 328
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 6/169 (3%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
++++VTGGAG+VGS L+ +G V +VDN TG ++ V G E DV +
Sbjct: 1 MKLLVTGGAGYVGSVCSTVLLEQGHEVTIVDNLTTGNRDAVP--LGATFVEGDIKDVADN 58
Query: 177 LLL--EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLLTSTSEV 233
+L D + H A + P + + N+V TL +L KR R + +ST+
Sbjct: 59 VLSSDSFDAVLHFAARSLVGESVEKPDEYWQHNMVTTLALLDAMKRNNVRNIVFSSTAAT 118
Query: 234 YGDPLQHPQKETYWGN-VNPIGTYFFSFSLIFLVFISQFRPSRKACRFF 281
YG+P P E + NP G S + + + + R+F
Sbjct: 119 YGEPETVPITEDAPTHPTNPYGATKLSIDYAITSYAHAYGFAATSLRYF 167
>sp|P29782|RMLB_STRGR dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=1
SV=1
Length = 328
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 119 IVVTGGAGFVGSHLVDRLIARG---DSVIVVDNFFT--GRKENVMHHFGNPNFELIRHDV 173
++VTG AGF+GS V L+ G D V+ + T G +N+ G+P + R D+
Sbjct: 5 LLVTGAAGFIGSQYVRTLLGPGGPPDVVVTALDALTYAGNPDNLAAVRGHPRYRFERGDI 64
Query: 174 VEP----LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLT 228
+ ++ DQ+ HLA + + ++TNV GT +L A R G A F+
Sbjct: 65 CDAPGRRVMAGQDQVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAATRHGVASFVQV 124
Query: 229 STSEVYGDPLQH 240
ST EVYG L+H
Sbjct: 125 STDEVYGS-LEH 135
>sp|A0QSK6|RMLB_MYCS2 dTDP-glucose 4,6-dehydratase OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=rmlB PE=1 SV=1
Length = 331
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 11/136 (8%)
Query: 117 LRIVVTGGAGFVGSHLVDRLI--ARGDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDV 173
+R++VTGGAGF+G++ V + AR S+ V+D + G +E++ L++ D+
Sbjct: 1 MRLLVTGGAGFIGANFVHLALREARTSSITVLDALTYAGSRESLAPVADR--IRLVQGDI 58
Query: 174 VE-----PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 228
+ L+ E D + H A + +P + +NVVGT +L +R R
Sbjct: 59 TDAALVGDLVAESDAVVHFAAETHVDNALADPEPFLHSNVVGTYTILEAVRRHNVRLHHV 118
Query: 229 STSEVYGD-PLQHPQK 243
ST EVYGD L +P +
Sbjct: 119 STDEVYGDLELDNPAR 134
>sp|Q9LH76|RHM3_ARATH Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana
GN=RHM3 PE=1 SV=1
Length = 664
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 12/134 (8%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRH 171
K I++TG AGF+ SH+ +RL+ ++V+D + +N+ +PNF+ ++
Sbjct: 5 KPKNILITGAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKG 64
Query: 172 DVVEPLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA- 223
D+ L+ E+D I H A + N + K N+ GT +L K G
Sbjct: 65 DIASADLVNYLLITEEIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQI 124
Query: 224 -RFLLTSTSEVYGD 236
RF+ ST EVYG+
Sbjct: 125 RRFIHVSTDEVYGE 138
>sp|P95780|RMLB_STRMU dTDP-glucose 4,6-dehydratase OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=rmlB PE=1 SV=2
Length = 348
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 10/130 (7%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSV--IVVDNF-FTGRKENVMHHFGNPNFELIRHDV-- 173
I+VTGGAGF+GS+ V + V V+D + G + N+ G+ EL+ D+
Sbjct: 7 IIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNRANLEEILGD-RVELVVGDIAD 65
Query: 174 ---VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230
V+ L + D I H A + + +P I TN VGT +L A++ RF ST
Sbjct: 66 SELVDKLAAKADAIVHYAAESHNDNSLKDPSPFIYTNFVGTYILLEAARKYDIRFHHVST 125
Query: 231 SEVYGD-PLQ 239
EVYGD PL+
Sbjct: 126 DEVYGDLPLR 135
>sp|P22715|GALE_SALTY UDP-glucose 4-epimerase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=galE PE=3 SV=2
Length = 338
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 15/149 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G V+++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 227
E L+ E +D + H A + P++ NV GTL ++ + + L+
Sbjct: 61 NEALITEILHDHAIDTVIHFAGLKAVGESVARPLEYYDNNVNGTLRLVSAMRAANVKNLI 120
Query: 228 -TSTSEVYGDPLQHPQKETYWGNVNPIGT 255
+S++ VYGD + P E++ P GT
Sbjct: 121 FSSSATVYGDQPKIPYVESF-----PTGT 144
>sp|O81312|GAE3_ARATH UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2
SV=1
Length = 430
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 31/153 (20%)
Query: 114 RKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV 173
R+G ++VTG AGFVG+H+ L RGD V+ +DNF + + +P+ + R +
Sbjct: 88 RRGFSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNF---------NDYYDPSLKRARQAL 138
Query: 174 VE-----------------PLLLEV---DQIYHLACPASPVHYKFNPVKTIKTNVVGTLN 213
+E L EV + HLA A + NP + +N+ G +N
Sbjct: 139 LERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAAQAGVRYAMENPSSYVHSNIAGFVN 198
Query: 214 MLGLAKRVGAR--FLLTSTSEVYGDPLQHPQKE 244
+L + K + + S+S VYG + P E
Sbjct: 199 LLEVCKSANPQPAIVWASSSSVYGLNTKVPFSE 231
>sp|C6DAW5|ARNA_PECCP Bifunctional polymyxin resistance protein ArnA OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3
SV=1
Length = 672
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 9/136 (6%)
Query: 106 GKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPN 165
G + ++R+ R+++ G GF+G+HL +RL+ R D + + + + G+P
Sbjct: 311 GNLASRVQRRRTRVLILGVNGFIGNHLTERLL-RDDRYEIYGLDISS--DAIARFLGDPR 367
Query: 166 FELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK 219
F + D+ +E + + D I L A+P+ Y NP++ + + L ++
Sbjct: 368 FHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCV 427
Query: 220 RVGARFLLTSTSEVYG 235
R R + STSEVYG
Sbjct: 428 RYNKRIVFPSTSEVYG 443
>sp|Q6D2F1|ARNA_ERWCT Bifunctional polymyxin resistance protein ArnA OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=arnA PE=3 SV=1
Length = 673
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 9/136 (6%)
Query: 106 GKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPN 165
G + ++R+ R+++ G GF+G+HL +RL+ R D + + + + G+P
Sbjct: 312 GNLASRVQRRRTRVLILGVNGFIGNHLTERLL-RDDRYEIYGLDIS--SDAIARFLGDPR 368
Query: 166 FELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK 219
F + D+ +E + + D I L A+P+ Y NP++ + + L ++
Sbjct: 369 FHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCV 428
Query: 220 RVGARFLLTSTSEVYG 235
R R + STSEVYG
Sbjct: 429 RYNKRIVFPSTSEVYG 444
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.142 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,354,389
Number of Sequences: 539616
Number of extensions: 5045820
Number of successful extensions: 15569
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 15031
Number of HSP's gapped (non-prelim): 485
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)