Query 022901
Match_columns 290
No_of_seqs 214 out of 1558
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:58:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022901.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022901hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1719 Dual specificity phosp 100.0 6.1E-30 1.3E-34 209.8 11.0 152 73-238 2-153 (183)
2 smart00195 DSPc Dual specifici 100.0 4.8E-29 1E-33 205.0 16.4 131 102-248 2-133 (138)
3 cd00127 DSPc Dual specificity 99.9 3.7E-27 8E-32 193.2 15.1 134 101-248 2-136 (139)
4 PF00782 DSPc: Dual specificit 99.9 1.8E-26 3.8E-31 188.3 12.4 128 108-249 1-129 (133)
5 KOG1718 Dual specificity phosp 99.9 3.9E-26 8.4E-31 189.9 13.9 134 100-249 16-150 (198)
6 KOG1716 Dual specificity phosp 99.9 8.1E-26 1.8E-30 208.1 16.3 140 97-249 71-211 (285)
7 PRK12361 hypothetical protein; 99.9 1.8E-24 3.8E-29 215.5 21.0 183 72-273 66-250 (547)
8 KOG1717 Dual specificity phosp 99.9 3.5E-24 7.6E-29 189.7 11.4 132 102-248 173-306 (343)
9 PTZ00242 protein tyrosine phos 99.9 7.2E-22 1.6E-26 168.2 16.6 137 100-248 10-152 (166)
10 PTZ00393 protein tyrosine phos 99.9 2.7E-20 5.9E-25 165.0 19.7 130 107-251 93-225 (241)
11 KOG1720 Protein tyrosine phosp 99.8 2.6E-18 5.7E-23 148.0 14.7 132 92-237 44-190 (225)
12 PF03162 Y_phosphatase2: Tyros 99.8 6.9E-18 1.5E-22 143.4 12.1 142 98-252 4-151 (164)
13 PF05706 CDKN3: Cyclin-depende 99.7 1.3E-17 2.8E-22 140.2 10.6 119 105-228 40-168 (168)
14 TIGR01244 conserved hypothetic 99.7 1E-15 2.2E-20 126.1 15.1 125 101-236 2-126 (135)
15 COG2453 CDC14 Predicted protei 99.6 3.2E-15 6.8E-20 129.0 11.6 79 157-237 70-149 (180)
16 PF04273 DUF442: Putative phos 99.6 5.5E-15 1.2E-19 117.5 10.9 103 101-213 2-104 (110)
17 COG3453 Uncharacterized protei 99.5 5.3E-13 1.1E-17 105.7 13.7 124 99-233 1-124 (130)
18 PLN02727 NAD kinase 99.4 6.2E-13 1.3E-17 135.9 12.7 110 106-223 261-370 (986)
19 KOG2836 Protein tyrosine phosp 99.4 3.8E-12 8.2E-17 102.9 13.0 118 120-250 34-152 (173)
20 PF13350 Y_phosphatase3: Tyros 99.3 1.4E-11 3E-16 104.5 9.1 117 103-229 15-158 (164)
21 KOG1572 Predicted protein tyro 99.3 4.4E-11 9.5E-16 105.3 12.1 125 98-235 57-188 (249)
22 smart00012 PTPc_DSPc Protein t 99.2 5.8E-10 1.3E-14 85.9 11.5 84 161-244 4-96 (105)
23 smart00404 PTPc_motif Protein 99.2 5.8E-10 1.3E-14 85.9 11.5 84 161-244 4-96 (105)
24 KOG2283 Clathrin coat dissocia 99.1 2.3E-11 5E-16 117.4 2.5 123 97-235 11-149 (434)
25 cd00047 PTPc Protein tyrosine 98.9 6.8E-09 1.5E-13 92.3 9.6 84 158-241 128-219 (231)
26 smart00194 PTPc Protein tyrosi 98.8 3.3E-08 7.3E-13 89.4 10.0 84 160-243 158-248 (258)
27 COG5350 Predicted protein tyro 98.7 1.5E-07 3.2E-12 78.0 10.8 123 122-253 27-154 (172)
28 COG2365 Protein tyrosine/serin 98.6 2E-07 4.2E-12 84.5 8.7 132 102-239 49-181 (249)
29 PF14566 PTPlike_phytase: Inos 98.5 1.7E-07 3.7E-12 78.4 6.6 64 151-217 84-147 (149)
30 PRK15375 pathogenicity island 98.4 1.7E-06 3.7E-11 84.4 10.4 87 160-246 423-521 (535)
31 PF00102 Y_phosphatase: Protei 98.4 2.9E-06 6.2E-11 74.7 10.2 85 160-244 135-226 (235)
32 PHA02742 protein tyrosine phos 98.3 4.4E-06 9.6E-11 77.8 10.7 78 160-237 183-277 (303)
33 PHA02740 protein tyrosine phos 98.3 5.5E-06 1.2E-10 77.0 10.5 93 160-252 178-288 (298)
34 PHA02747 protein tyrosine phos 98.3 6.4E-06 1.4E-10 77.1 10.3 82 160-241 184-282 (312)
35 PHA02746 protein tyrosine phos 98.2 1E-05 2.2E-10 76.0 10.2 78 160-237 202-295 (323)
36 PHA02738 hypothetical protein; 98.1 1.8E-05 4E-10 74.2 10.0 79 160-238 179-276 (320)
37 KOG2386 mRNA capping enzyme, g 98.1 6.3E-06 1.4E-10 78.5 6.8 116 127-250 62-181 (393)
38 KOG0792 Protein tyrosine phosp 98.1 1.2E-05 2.5E-10 83.7 8.7 147 106-252 937-1130(1144)
39 PF04179 Init_tRNA_PT: Initiat 97.9 0.00043 9.4E-09 67.7 15.1 133 103-252 291-430 (451)
40 KOG0790 Protein tyrosine phosp 97.7 3.2E-05 6.8E-10 74.1 4.4 82 161-243 416-508 (600)
41 COG5599 PTP2 Protein tyrosine 97.7 6E-05 1.3E-09 68.0 5.8 53 160-216 185-240 (302)
42 KOG0791 Protein tyrosine phosp 97.4 0.00029 6.2E-09 66.2 6.5 95 161-255 254-357 (374)
43 KOG0789 Protein tyrosine phosp 97.2 0.0014 3E-08 63.0 8.9 89 162-253 267-368 (415)
44 KOG0793 Protein tyrosine phosp 96.8 0.003 6.6E-08 63.7 6.8 139 99-237 790-976 (1004)
45 PF14671 DSPn: Dual specificit 96.1 0.014 3E-07 48.4 5.7 68 167-235 38-111 (141)
46 KOG4228 Protein tyrosine phosp 95.6 0.0066 1.4E-07 64.2 2.3 44 166-212 702-748 (1087)
47 KOG4228 Protein tyrosine phosp 93.9 0.13 2.7E-06 54.9 6.4 59 194-252 1018-1081(1087)
48 KOG4471 Phosphatidylinositol 3 92.9 0.19 4.1E-06 50.3 5.6 34 184-217 364-398 (717)
49 PLN02160 thiosulfate sulfurtra 92.6 0.45 9.7E-06 38.9 6.7 87 118-223 20-107 (136)
50 cd01518 RHOD_YceA Member of th 91.3 1 2.3E-05 34.2 7.0 26 195-223 62-87 (101)
51 PF04343 DUF488: Protein of un 88.9 3.2 6.9E-05 33.1 8.3 50 120-170 6-55 (122)
52 KOG1089 Myotubularin-related p 88.3 0.69 1.5E-05 46.5 4.7 33 180-212 330-362 (573)
53 PF06602 Myotub-related: Myotu 87.8 1.3 2.8E-05 42.3 6.2 33 181-213 218-250 (353)
54 COG0607 PspE Rhodanese-related 87.2 2 4.4E-05 32.6 6.0 69 127-223 18-87 (110)
55 PRK01415 hypothetical protein; 85.2 2.2 4.7E-05 38.7 5.9 26 195-223 172-197 (247)
56 PF02571 CbiJ: Precorrin-6x re 81.8 3.9 8.4E-05 37.1 6.1 91 107-208 46-141 (249)
57 PF00581 Rhodanese: Rhodanese- 81.2 12 0.00026 28.1 8.0 81 127-223 11-98 (113)
58 cd01522 RHOD_1 Member of the R 77.0 14 0.00029 29.0 7.3 26 195-223 65-90 (117)
59 cd01520 RHOD_YbbB Member of th 76.8 14 0.00029 29.5 7.3 27 195-223 87-113 (128)
60 COG1054 Predicted sulfurtransf 76.8 11 0.00023 35.2 7.3 105 104-236 105-216 (308)
61 cd01533 4RHOD_Repeat_2 Member 75.7 7.4 0.00016 29.8 5.3 25 195-222 67-91 (109)
62 PRK00142 putative rhodanese-re 75.4 9.6 0.00021 35.7 6.9 26 195-223 172-197 (314)
63 PRK05600 thiamine biosynthesis 74.4 9.2 0.0002 36.7 6.6 25 195-222 333-357 (370)
64 PF03668 ATP_bind_2: P-loop AT 71.0 5.5 0.00012 36.9 4.0 18 196-213 244-261 (284)
65 cd01448 TST_Repeat_1 Thiosulfa 70.8 11 0.00023 29.5 5.2 27 195-223 80-106 (122)
66 PRK08057 cobalt-precorrin-6x r 70.7 13 0.00027 33.8 6.2 86 107-204 45-135 (248)
67 cd01523 RHOD_Lact_B Member of 66.0 8.5 0.00018 28.9 3.6 26 195-223 62-87 (100)
68 smart00450 RHOD Rhodanese Homo 64.8 16 0.00035 26.4 4.9 26 195-223 57-82 (100)
69 PRK05416 glmZ(sRNA)-inactivati 64.2 12 0.00027 34.6 4.9 37 178-214 223-265 (288)
70 cd01534 4RHOD_Repeat_3 Member 64.1 19 0.00042 26.7 5.3 26 195-223 57-82 (95)
71 cd01527 RHOD_YgaP Member of th 63.6 18 0.0004 26.9 5.1 25 195-222 55-79 (99)
72 COG1660 Predicted P-loop-conta 62.0 14 0.00031 33.9 4.7 17 196-212 245-261 (286)
73 TIGR00715 precor6x_red precorr 59.2 25 0.00054 32.0 5.9 87 108-204 47-137 (256)
74 smart00400 ZnF_CHCC zinc finge 54.9 12 0.00027 25.3 2.5 32 198-231 23-54 (55)
75 TIGR02981 phageshock_pspE phag 54.7 33 0.00071 26.4 5.2 25 195-222 59-83 (101)
76 cd01532 4RHOD_Repeat_1 Member 54.5 21 0.00046 26.5 4.0 28 195-223 51-78 (92)
77 PF03861 ANTAR: ANTAR domain; 53.3 22 0.00048 24.2 3.5 26 209-234 15-40 (56)
78 cd01530 Cdc25 Cdc25 phosphatas 51.6 16 0.00035 28.9 3.0 22 195-218 69-91 (121)
79 PF01807 zf-CHC2: CHC2 zinc fi 50.5 13 0.00029 28.4 2.3 37 198-236 54-90 (97)
80 KOG1530 Rhodanese-related sulf 48.7 29 0.00063 28.5 4.0 76 119-210 29-104 (136)
81 cd01519 RHOD_HSP67B2 Member of 46.9 30 0.00066 25.9 3.8 26 195-223 67-92 (106)
82 PRK05320 rhodanese superfamily 44.9 44 0.00096 30.3 5.2 26 195-223 176-201 (257)
83 PF02126 PTE: Phosphotriestera 44.4 86 0.0019 29.3 7.1 48 195-248 156-204 (308)
84 PRK10287 thiosulfate:cyanide s 44.3 42 0.00091 26.0 4.3 25 195-222 61-85 (104)
85 cd01528 RHOD_2 Member of the R 44.3 46 0.001 24.9 4.5 26 195-223 59-84 (101)
86 cd01529 4RHOD_Repeats Member o 43.3 30 0.00065 25.7 3.3 26 195-223 57-82 (96)
87 PF10302 DUF2407: DUF2407 ubiq 42.9 12 0.00027 28.8 1.0 10 195-204 86-95 (97)
88 TIGR03865 PQQ_CXXCW PQQ-depend 42.8 53 0.0012 27.5 5.0 27 195-223 117-143 (162)
89 PF02673 BacA: Bacitracin resi 42.4 30 0.00064 31.6 3.6 27 202-230 159-185 (259)
90 cd01525 RHOD_Kc Member of the 41.8 39 0.00085 25.3 3.8 26 195-223 66-91 (105)
91 TIGR01839 PHA_synth_II poly(R) 40.7 1.4E+02 0.003 30.5 8.3 57 149-205 237-300 (560)
92 TIGR00236 wecB UDP-N-acetylglu 39.4 2.3E+02 0.0051 26.2 9.4 25 177-202 69-93 (365)
93 TIGR03162 ribazole_cobC alpha- 38.7 1.8E+02 0.0038 23.9 7.7 51 173-229 115-166 (177)
94 PRK00162 glpE thiosulfate sulf 37.9 1.7E+02 0.0038 21.9 7.2 26 195-223 59-84 (108)
95 PRK12554 undecaprenyl pyrophos 36.6 35 0.00076 31.4 3.2 26 203-230 166-191 (276)
96 PRK08057 cobalt-precorrin-6x r 36.2 2.3E+02 0.0049 25.6 8.3 79 106-190 168-247 (248)
97 TIGR00753 undec_PP_bacA undeca 35.9 37 0.00081 30.9 3.2 26 203-230 160-185 (255)
98 PF07287 DUF1446: Protein of u 35.8 1.4E+02 0.0031 28.6 7.3 37 184-226 151-189 (362)
99 cd01449 TST_Repeat_2 Thiosulfa 35.3 63 0.0014 24.7 4.1 26 195-223 79-104 (118)
100 PRK00281 undecaprenyl pyrophos 35.1 40 0.00087 30.9 3.3 26 203-230 164-189 (268)
101 cd01447 Polysulfide_ST Polysul 34.7 49 0.0011 24.5 3.3 25 195-222 62-86 (103)
102 TIGR03167 tRNA_sel_U_synt tRNA 34.3 1.6E+02 0.0036 27.5 7.3 24 196-222 76-100 (311)
103 cd01443 Cdc25_Acr2p Cdc25 enzy 33.9 1.3E+02 0.0028 23.0 5.7 16 195-210 67-82 (113)
104 cd03174 DRE_TIM_metallolyase D 33.1 2.4E+02 0.0051 24.9 8.0 89 120-213 121-209 (265)
105 PF04263 TPK_catalytic: Thiami 31.5 1.8E+02 0.0038 23.3 6.1 48 151-208 51-98 (123)
106 PF12554 MOZART1: Mitotic-spin 31.5 1.4E+02 0.0031 20.0 4.6 31 204-235 18-48 (48)
107 PF04364 DNA_pol3_chi: DNA pol 31.5 79 0.0017 25.7 4.2 25 179-204 15-39 (137)
108 TIGR00715 precor6x_red precorr 31.2 3E+02 0.0064 25.0 8.3 78 106-189 175-254 (256)
109 PRK11493 sseA 3-mercaptopyruva 30.9 38 0.00083 30.8 2.5 26 195-223 232-257 (281)
110 cd01444 GlpE_ST GlpE sulfurtra 29.7 58 0.0013 23.7 2.9 26 195-223 57-82 (96)
111 COG1099 Predicted metal-depend 29.6 39 0.00086 30.4 2.2 86 104-199 3-100 (254)
112 PF00762 Ferrochelatase: Ferro 28.3 1.2E+02 0.0026 28.4 5.4 65 103-171 232-301 (316)
113 cd01526 RHOD_ThiF Member of th 28.2 62 0.0013 25.3 2.9 25 195-222 73-97 (122)
114 PRK08762 molybdopterin biosynt 27.8 2.4E+02 0.0052 26.8 7.5 26 195-223 58-83 (376)
115 PRK05728 DNA polymerase III su 27.3 83 0.0018 25.8 3.6 26 178-204 14-39 (142)
116 PRK10886 DnaA initiator-associ 27.3 1.6E+02 0.0035 25.6 5.6 37 176-216 24-60 (196)
117 COG0406 phoE Broad specificity 27.2 1.2E+02 0.0026 25.8 4.8 48 172-225 122-170 (208)
118 PLN02449 ferrochelatase 26.9 1.2E+02 0.0027 30.3 5.3 82 103-192 329-415 (485)
119 cd07937 DRE_TIM_PC_TC_5S Pyruv 26.3 4.5E+02 0.0097 23.9 8.7 91 120-216 124-214 (275)
120 COG2927 HolC DNA polymerase II 26.3 70 0.0015 26.6 3.0 23 181-204 17-39 (144)
121 PHA02540 61 DNA primase; Provi 25.7 77 0.0017 30.2 3.5 40 195-236 52-91 (337)
122 TIGR00853 pts-lac PTS system, 25.7 58 0.0013 24.8 2.3 75 195-273 4-90 (95)
123 TIGR03848 MSMEG_4193 probable 24.9 1.9E+02 0.0042 24.6 5.7 51 173-229 117-173 (204)
124 cd04445 DEP_PLEK1 DEP (Disheve 24.8 78 0.0017 24.6 2.7 35 195-234 25-60 (99)
125 KOG1004 Exosomal 3'-5' exoribo 24.7 1.6E+02 0.0034 26.3 4.9 38 195-234 186-223 (230)
126 COG1964 Predicted Fe-S oxidore 24.5 6E+02 0.013 25.3 9.3 89 109-201 116-208 (475)
127 TIGR02094 more_P_ylases alpha- 24.2 1.4E+02 0.0031 30.7 5.3 38 193-233 159-199 (601)
128 COG2897 SseA Rhodanese-related 24.2 57 0.0012 30.3 2.3 13 195-208 235-247 (285)
129 PLN02790 transketolase 23.7 1.7E+02 0.0036 30.4 5.8 53 149-208 190-242 (654)
130 COG1968 BacA Undecaprenyl pyro 23.6 83 0.0018 29.0 3.2 25 203-229 165-189 (270)
131 cd05567 PTS_IIB_mannitol PTS_I 23.4 89 0.0019 23.0 2.9 13 196-208 2-14 (87)
132 COG2099 CobK Precorrin-6x redu 22.7 1.9E+02 0.0041 26.5 5.2 84 110-199 49-133 (257)
133 PRK01295 phosphoglyceromutase; 22.5 3.9E+02 0.0084 23.0 7.2 51 173-229 126-179 (206)
134 TIGR01838 PHA_synth_I poly(R)- 22.5 7.4E+02 0.016 25.1 10.0 55 150-204 211-273 (532)
135 TIGR02263 benz_CoA_red_C benzo 22.1 1.7E+02 0.0037 28.1 5.2 48 120-168 313-360 (380)
136 COG0794 GutQ Predicted sugar p 22.1 1.4E+02 0.0031 26.2 4.3 35 178-219 27-61 (202)
137 PRK06646 DNA polymerase III su 22.1 1.2E+02 0.0025 25.5 3.6 26 178-204 14-39 (154)
138 cd07944 DRE_TIM_HOA_like 4-hyd 22.0 4.7E+02 0.01 23.7 7.9 88 120-216 115-205 (266)
139 PF12683 DUF3798: Protein of u 22.0 88 0.0019 28.8 3.0 82 123-204 125-209 (275)
140 COG1831 Predicted metal-depend 21.9 5.6E+02 0.012 23.7 8.1 67 160-232 36-107 (285)
141 PRK05772 translation initiatio 21.7 1.6E+02 0.0034 28.4 4.8 13 191-204 165-177 (363)
142 PRK11449 putative deoxyribonuc 21.5 1.3E+02 0.0028 27.2 4.0 51 182-233 116-172 (258)
143 cd01317 DHOase_IIa Dihydroorot 21.2 2.9E+02 0.0063 26.1 6.6 8 195-202 134-141 (374)
144 PRK09629 bifunctional thiosulf 21.1 1.4E+02 0.0031 30.7 4.6 26 195-223 224-249 (610)
145 PRK11784 tRNA 2-selenouridine 20.7 2.2E+02 0.0047 27.1 5.6 26 195-222 89-114 (345)
146 PRK14116 gpmA phosphoglyceromu 20.4 2.4E+02 0.0051 24.8 5.4 51 173-229 150-203 (228)
No 1
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=6.1e-30 Score=209.76 Aligned_cols=152 Identities=24% Similarity=0.360 Sum_probs=136.1
Q ss_pred cchhHHHHHHHHHhhcCCeeeeccCCCCceeecCCeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHH
Q 022901 73 KNRMEEYNTAMKRMMRNPYEYHHDLGMNYTQITDNLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIV 152 (290)
Q Consensus 73 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~I~~~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~ 152 (290)
++|.+||++++++++++.- ...+|.+|..++++|..|+...+.+.+++ +|+..|++++++.|.... .
T Consensus 2 ~ar~~fyptllynvv~~k~-----s~~~wy~~~~~v~~~~~~FrS~~~~~i~k-e~v~gvv~~ne~yE~~a~-------s 68 (183)
T KOG1719|consen 2 GARVLFYPTLLYNVVREKA-----SAFRWYRIDEFVILGAMPFRSMDVPLIKK-ENVGGVVTLNEPYELLAP-------S 68 (183)
T ss_pred CceeeecHHHHHHHHHHHH-----hhhceeeecceEEEeecccccccchHHHh-cCCCeEEEeCCchhhhhh-------h
Confidence 6899999999999998763 12235599999999999997788889987 999999999999876542 2
Q ss_pred HHHHhcCceEEEeeCCCCCCCchhhhHHHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHH
Q 022901 153 ERCQVLGIRHMRRPAADFDPDSLRSQLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLT 232 (290)
Q Consensus 153 ~~~~~~gI~~l~iPi~D~~~~~l~~~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~ 232 (290)
..|+..||+++.+|+.|+...+..+.+.++|+||++....| ..|||||+||++||+|+|+||||.+.+|++++|+++++
T Consensus 69 ~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLG-ktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr 147 (183)
T KOG1719|consen 69 NLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLG-KTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVR 147 (183)
T ss_pred HHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccC-CeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHH
Confidence 47899999999999999998888899999999999999888 59999999999999999999999999999999999999
Q ss_pred hhCCCC
Q 022901 233 SKRPCG 238 (290)
Q Consensus 233 ~~Rp~~ 238 (290)
++||..
T Consensus 148 ~iRp~V 153 (183)
T KOG1719|consen 148 KIRPRV 153 (183)
T ss_pred hcCcce
Confidence 999983
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.96 E-value=4.8e-29 Score=205.00 Aligned_cols=131 Identities=28% Similarity=0.492 Sum_probs=119.0
Q ss_pred eeecCCeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCchhhhHHH
Q 022901 102 TQITDNLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSLRSQLPK 181 (290)
Q Consensus 102 ~~I~~~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l~~~l~~ 181 (290)
++|.|+||+|++|. +.+++.|++ .||++||||+.+.+.. ...+++|+++|+.|....++.+.+..
T Consensus 2 ~~I~~~l~~G~~~~-~~~~~~l~~-~gi~~Vi~l~~~~~~~-------------~~~~~~~~~ipi~D~~~~~~~~~~~~ 66 (138)
T smart00195 2 SEILPHLYLGSYSS-ALNLALLKK-LGITHVINVTNEVPNL-------------NKKGFTYLGVPILDNTETKISPYFPE 66 (138)
T ss_pred cEEeCCeEECChhH-cCCHHHHHH-cCCCEEEEccCCCCCC-------------CCCCCEEEEEECCCCCCCChHHHHHH
Confidence 68999999999995 778999997 9999999999875421 13589999999999777788889999
Q ss_pred HHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHhhCCC-CCCHHHHHHHH
Q 022901 182 AVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLTSKRPC-GPNKTAIRGAT 248 (290)
Q Consensus 182 av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~~~Rp~-~Pn~~f~~ql~ 248 (290)
+++||+.++.++ ++|||||.+|+|||+++++||||+..||++++|+++|+++||. .||.+|++|+.
T Consensus 67 ~~~~i~~~~~~~-~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~ 133 (138)
T smart00195 67 AVEFIEDAEKKG-GKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLI 133 (138)
T ss_pred HHHHHHHHhcCC-CeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHH
Confidence 999999998877 6999999999999999999999999999999999999999997 89999999986
No 3
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.95 E-value=3.7e-27 Score=193.19 Aligned_cols=134 Identities=30% Similarity=0.510 Sum_probs=121.0
Q ss_pred ceeecCCeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCchhhhHH
Q 022901 101 YTQITDNLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSLRSQLP 180 (290)
Q Consensus 101 ~~~I~~~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l~~~l~ 180 (290)
.++|.|+||+|++|. +.|.+.|++ .||++||||+.+.+.. .+...|++|+++|+.|...+++...++
T Consensus 2 ~~~i~~~l~~g~~~~-~~d~~~L~~-~gi~~VI~l~~~~~~~-----------~~~~~~~~~~~~~~~D~~~~~~~~~~~ 68 (139)
T cd00127 2 LSEITPGLYLGSYPA-ASDKELLKK-LGITHVLNVAKEVPNE-----------NLFLSDFNYLYVPILDLPSQDISKYFD 68 (139)
T ss_pred cCEEcCCeEECChhH-hcCHHHHHH-cCCCEEEEcccCCCCc-----------ccCCCCceEEEEEceeCCCCChHHHHH
Confidence 579999999999995 679999997 9999999999986541 123468999999999998788888899
Q ss_pred HHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHhhCCC-CCCHHHHHHHH
Q 022901 181 KAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLTSKRPC-GPNKTAIRGAT 248 (290)
Q Consensus 181 ~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~~~Rp~-~Pn~~f~~ql~ 248 (290)
.++++|+....++ ++|||||.+|+|||++++++|||...++++++|+++|++.||. .||.+|+.|+.
T Consensus 69 ~~~~~i~~~~~~~-~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~ 136 (139)
T cd00127 69 EAVDFIDDAREKG-GKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLK 136 (139)
T ss_pred HHHHHHHHHHhcC-CcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHH
Confidence 9999999998876 6999999999999999999999999999999999999999998 99999999986
No 4
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.94 E-value=1.8e-26 Score=188.26 Aligned_cols=128 Identities=39% Similarity=0.544 Sum_probs=115.0
Q ss_pred eEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCchhhhHHHHHHHHH
Q 022901 108 LIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSLRSQLPKAVSLLE 187 (290)
Q Consensus 108 LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l~~~l~~av~~I~ 187 (290)
||+|+.+. +. .+.|++ +||++|||++.+.+.. ......++.|+++|+.|....++...+..+++||+
T Consensus 1 lylG~~~~-a~-~~~l~~-~~I~~Vin~~~~~~~~----------~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~ 67 (133)
T PF00782_consen 1 LYLGSYPA-AS-IAFLKN-LGITHVINLQEECPNP----------YFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIE 67 (133)
T ss_dssp EEEEEHHH-HC-HHHHHH-TTEEEEEECSSSSSTS----------HHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHH
T ss_pred CEEeCHHH-Hh-HHHHHH-CCCCEEEEccCCCcCc----------hhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhh
Confidence 79999995 66 889987 9999999999986542 22345689999999999888888899999999999
Q ss_pred HHHhcCCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHhhCCC-CCCHHHHHHHHH
Q 022901 188 WAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLTSKRPC-GPNKTAIRGATY 249 (290)
Q Consensus 188 ~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~~~Rp~-~Pn~~f~~ql~~ 249 (290)
++..++ ++|||||.+|+|||+++++||||+..+|++++|+++++++||. .||.+|++|+..
T Consensus 68 ~~~~~~-~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~ 129 (133)
T PF00782_consen 68 NAISEG-GKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYE 129 (133)
T ss_dssp HHHHTT-SEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHH
T ss_pred hhhccc-ceeEEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 998887 6999999999999999999999999999999999999999998 999999999863
No 5
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.94 E-value=3.9e-26 Score=189.91 Aligned_cols=134 Identities=26% Similarity=0.409 Sum_probs=120.7
Q ss_pred CceeecCCeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCchhhhH
Q 022901 100 NYTQITDNLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSLRSQL 179 (290)
Q Consensus 100 ~~~~I~~~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l~~~l 179 (290)
.+++|++.||+++.- ++.+...|++ .+|++|||.+.+.+...+ .+++|+.+|+.|.+...+.++|
T Consensus 16 ~~SqIt~sLfl~~Gv-aA~~k~~l~~-~~It~IiNat~E~pn~~l-------------~~~qy~kv~~~D~p~~~l~~hf 80 (198)
T KOG1718|consen 16 GMSQITPSLFLSNGV-AANDKLLLKK-RKITCIINATTEVPNTSL-------------PDIQYMKVPLEDTPQARLYDHF 80 (198)
T ss_pred chhhcCcceeEeccc-cccCHHHHHh-cCceEEEEcccCCCCccC-------------CCceeEEEEcccCCcchhhhhh
Confidence 478999999999555 3667777887 999999999998665433 3789999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHhhCCC-CCCHHHHHHHHH
Q 022901 180 PKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLTSKRPC-GPNKTAIRGATY 249 (290)
Q Consensus 180 ~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~~~Rp~-~Pn~~f~~ql~~ 249 (290)
+.+.+.|+....++ |++||||.||++||+++++||||++.+|++.||+.+++++||. +||.||++|+..
T Consensus 81 D~vAD~I~~v~~~g-G~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~ 150 (198)
T KOG1718|consen 81 DPVADKIHSVIMRG-GKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLID 150 (198)
T ss_pred hHHHHHHHHHHhcC-CcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHH
Confidence 99999999988887 7999999999999999999999999999999999999999998 999999999863
No 6
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.94 E-value=8.1e-26 Score=208.07 Aligned_cols=140 Identities=33% Similarity=0.537 Sum_probs=126.4
Q ss_pred CCCCceeecCCeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCchh
Q 022901 97 LGMNYTQITDNLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSLR 176 (290)
Q Consensus 97 ~~~~~~~I~~~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l~ 176 (290)
.+..+..|.|+||+|++. .+.+.+.|++ .||++|+|+....+..++ ....++.|+++|+.|.+..++.
T Consensus 71 ~~~~~~~i~p~l~lg~~~-~~~~~~~l~~-~~it~vln~~~~~~~~~~----------~~~~~~~y~~i~~~D~~~~~i~ 138 (285)
T KOG1716|consen 71 TGNPIVEILPNLYLGSQG-VASDPDLLKK-LGITHVLNVSSSCPNPRF----------LKEQGIKYLRIPVEDNPSTDIL 138 (285)
T ss_pred ccCCceeecCCceecCcc-cccchhhHHH-cCCCEEEEecccCCcccc----------ccccCceEEeccccCCccccHH
Confidence 346789999999999999 4789999987 999999999998765431 1123799999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHhhCCC-CCCHHHHHHHHH
Q 022901 177 SQLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLTSKRPC-GPNKTAIRGATY 249 (290)
Q Consensus 177 ~~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~~~Rp~-~Pn~~f~~ql~~ 249 (290)
.+|+.+++||+++...+ ++|||||.+|++||+|+++||||++.+|++++|+++|+.+||+ .||.+|+.|+.-
T Consensus 139 ~~~~~~~~fI~~a~~~~-~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~ 211 (285)
T KOG1716|consen 139 QHFPEAISFIEKAREKG-GKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLE 211 (285)
T ss_pred HHHHHHHHHHHHHHhCC-CeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHH
Confidence 99999999999999987 7999999999999999999999999999999999999999999 699999999863
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.93 E-value=1.8e-24 Score=215.54 Aligned_cols=183 Identities=21% Similarity=0.281 Sum_probs=141.4
Q ss_pred ccchhHHHHHHHHHhhcCCeeeeccCCCCceeecCCeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhH
Q 022901 72 SKNRMEEYNTAMKRMMRNPYEYHHDLGMNYTQITDNLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPI 151 (290)
Q Consensus 72 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~I~~~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i 151 (290)
..++..++|.++.....+-+.-..+...++++|.|+||+|+.+ .+.|++.|++ +||++||||+.+.+...+.
T Consensus 66 ~~~~~l~~P~l~~~~~~~~~~r~~~~~~~~~~I~~~l~lG~~~-~a~d~~~L~~-~gI~~Vldlt~E~~~~~~~------ 137 (547)
T PRK12361 66 WYIRWVFIPFLLGTRLYNAWARKRDSVPAIQKIDENLYLGCRL-FPADLEKLKS-NKITAILDVTAEFDGLDWS------ 137 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCcceEEcCcEEECCCC-CcccHHHHHH-cCCCEEEEccccccccccc------
Confidence 3467788888844333222222223345789999999999999 4789999997 9999999999765432110
Q ss_pred HHHHHhcCceEEEeeCCCCCCCchhhhHHHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHH-CCCCHHHHHHH
Q 022901 152 VERCQVLGIRHMRRPAADFDPDSLRSQLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWF-CGMKLDAAYDM 230 (290)
Q Consensus 152 ~~~~~~~gI~~l~iPi~D~~~~~l~~~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~-~g~s~~eA~~~ 230 (290)
....+++|+++|+.|...++. +.++++++||+++++++ ++|||||.+|+|||+++++||||.. .++++++|+++
T Consensus 138 ---~~~~~i~yl~iPi~D~~~p~~-~~l~~a~~~i~~~~~~~-~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~ 212 (547)
T PRK12361 138 ---LTEEDIDYLNIPILDHSVPTL-AQLNQAINWIHRQVRAN-KSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQ 212 (547)
T ss_pred ---ccccCceEEEeecCCCCCCcH-HHHHHHHHHHHHHHHCC-CeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHH
Confidence 113579999999999877755 78999999999999887 6999999999999999999999976 58999999999
Q ss_pred HHhhCCC-CCCHHHHHHHHHHHhhcCCCCCCccCCCcccccccc
Q 022901 231 LTSKRPC-GPNKTAIRGATYDLAKDDPWKEPFENLPEHAFGNVA 273 (290)
Q Consensus 231 v~~~Rp~-~Pn~~f~~ql~~~l~~~~~~~~~~~~lp~~~~~~l~ 273 (290)
|+++||. .||.++++++...... ....+++..+-.+|
T Consensus 213 vr~~Rp~v~~n~~q~~~l~~~~~~------~~~~~~~~~~iI~N 250 (547)
T PRK12361 213 IKQIRKTARLNKRQLRALEKMLEQ------GKLNIHKRAWLIAN 250 (547)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHc------CCcccCCceEEEEC
Confidence 9999998 9999988888754332 34444555444444
No 8
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.91 E-value=3.5e-24 Score=189.68 Aligned_cols=132 Identities=26% Similarity=0.444 Sum_probs=119.5
Q ss_pred eeecCCeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhc-CceEEEeeCCCCCCCchhhhHH
Q 022901 102 TQITDNLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVL-GIRHMRRPAADFDPDSLRSQLP 180 (290)
Q Consensus 102 ~~I~~~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~-gI~~l~iPi~D~~~~~l~~~l~ 180 (290)
-+|+|+||+|+... ..+.+-|++ +||++|||++...+..+ ++. .+.|.+||+.|+-..++...|+
T Consensus 173 V~ilp~LYLg~a~d-s~NldvLkk-~gI~yviNVTpnlpn~f------------e~~g~f~YkqipisDh~Sqnls~ffp 238 (343)
T KOG1717|consen 173 VEILPNLYLGCAKD-STNLDVLKK-YGIKYVINVTPNLPNNF------------ENNGEFIYKQIPISDHASQNLSQFFP 238 (343)
T ss_pred hhhccchhcccccc-cccHHHHHh-cCceEEEecCCCCcchh------------hcCCceeEEeeeccchhhhhhhhhhH
Confidence 48999999999995 689999997 99999999998755433 222 4789999999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHhhCCC-CCCHHHHHHHH
Q 022901 181 KAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLTSKRPC-GPNKTAIRGAT 248 (290)
Q Consensus 181 ~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~~~Rp~-~Pn~~f~~ql~ 248 (290)
+|+.||+++..+. .-|||||-+|++||+||++||||.+...++++|+++|+.++.. .||.+|+-|++
T Consensus 239 EAIsfIdeArsk~-cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLl 306 (343)
T KOG1717|consen 239 EAISFIDEARSKN-CGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLL 306 (343)
T ss_pred HHHHHHHHhhccC-CcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHH
Confidence 9999999999886 4699999999999999999999999999999999999999987 99999999986
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.89 E-value=7.2e-22 Score=168.19 Aligned_cols=137 Identities=23% Similarity=0.291 Sum_probs=111.3
Q ss_pred CceeecCCeEEccCCCC---cccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCchh
Q 022901 100 NYTQITDNLIVGSQPQK---PEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSLR 176 (290)
Q Consensus 100 ~~~~I~~~LylGs~p~~---~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l~ 176 (290)
.+++++.++++-..|.. ..+++.|++ +||++||+++++.. +. +.+...|+.++++|+.|..+|+.
T Consensus 10 ~~~~~~~r~~~~~~P~~~~~~~~l~~L~~-~gI~~Iv~l~~~~~------~~----~~~~~~gi~~~~~p~~D~~~P~~- 77 (166)
T PTZ00242 10 QIEYVLFKFLILDAPSPSNLPLYIKELQR-YNVTHLVRVCGPTY------DA----ELLEKNGIEVHDWPFDDGAPPPK- 77 (166)
T ss_pred ceeeeceEEEEecCCCcccHHHHHHHHHh-CCCeEEEecCCCCC------CH----HHHHHCCCEEEecCCCCCCCCCH-
Confidence 46889999999999863 145578887 99999999987532 11 45667899999999999877655
Q ss_pred hhHHHHHHHHHHHHhc---CCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHhhCCCCCCHHHHHHHH
Q 022901 177 SQLPKAVSLLEWAISE---GKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLTSKRPCGPNKTAIRGAT 248 (290)
Q Consensus 177 ~~l~~av~~I~~~l~~---~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~~~Rp~~Pn~~f~~ql~ 248 (290)
+.+..+++++++.+.. .+++|+|||.+|+||||+++++|||...++++++|+++++++||..++.++++++.
T Consensus 78 ~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i~~~Q~~~l~ 152 (166)
T PTZ00242 78 AVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAINQTQLQFLK 152 (166)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 4677888888887754 23799999999999999999999999999999999999999999866665555543
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.86 E-value=2.7e-20 Score=165.00 Aligned_cols=130 Identities=22% Similarity=0.279 Sum_probs=105.6
Q ss_pred CeEEccCCCC---cccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCchhhhHHHHH
Q 022901 107 NLIVGSQPQK---PEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSLRSQLPKAV 183 (290)
Q Consensus 107 ~LylGs~p~~---~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l~~~l~~av 183 (290)
++++-..|.. +..++.|++ +||++||++++... +. +.+.+.||+++++|++|...|+. +.+.+++
T Consensus 93 rfLi~~~P~~~~~~~yl~eLk~-~gV~~lVrlcE~~Y------d~----~~~~~~GI~~~~lpipDg~aPs~-~~i~~~l 160 (241)
T PTZ00393 93 KILILDAPTNDLLPLYIKEMKN-YNVTDLVRTCERTY------ND----GEITSAGINVHELIFPDGDAPTV-DIVSNWL 160 (241)
T ss_pred eEEEeCCCCHHHHHHHHHHHHH-cCCCEEEECCCCCC------CH----HHHHHcCCeEEEeecCCCCCCCH-HHHHHHH
Confidence 4666677742 345688887 99999999987532 21 45678899999999999988875 6788899
Q ss_pred HHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 022901 184 SLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLTSKRPCGPNKTAIRGATYDL 251 (290)
Q Consensus 184 ~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~~~Rp~~Pn~~f~~ql~~~l 251 (290)
++++..+..+ ++|+|||++|+||||+++++||+. .||++++|+++|+++||..++..+++ ++.++
T Consensus 161 ~~i~~~l~~g-~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPgAIn~~Q~~-fL~~y 225 (241)
T PTZ00393 161 TIVNNVIKNN-RAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKGAINKRQLQ-FLKAY 225 (241)
T ss_pred HHHHHHHhcC-CeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Confidence 9999888776 699999999999999999999996 89999999999999999977765443 34343
No 11
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.79 E-value=2.6e-18 Score=148.04 Aligned_cols=132 Identities=28% Similarity=0.400 Sum_probs=104.6
Q ss_pred eeeccCCCCceeecCCeEEc-cCCC--C-----------cc-cHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHH
Q 022901 92 EYHHDLGMNYTQITDNLIVG-SQPQ--K-----------PE-DIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQ 156 (290)
Q Consensus 92 ~~~~~~~~~~~~I~~~LylG-s~p~--~-----------~~-d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~ 156 (290)
.|..-.+.++++|+|+.+++ ..|+ + +. -+..++. .+|+.++.|..... +. +.+.
T Consensus 44 ~ye~ve~gdfnwI~p~~~i~f~~p~~~s~gi~~~f~~~~~~~~~~~~~~-~~v~s~vrln~~~y------d~----~~f~ 112 (225)
T KOG1720|consen 44 HYEAVENGDFNWIIPDRFIAFAGPHLKSRGIESGFPLHLPQPYIQYFKN-NNVTSIVRLNKRLY------DA----KRFT 112 (225)
T ss_pred eeeccCCCCcceeccchhhhhcCccccccchhhcccccCChhHHHHhhh-cccceEEEcCCCCC------Ch----HHhc
Confidence 44555677899999996554 2222 1 11 1233454 88999999987632 22 4455
Q ss_pred hcCceEEEeeCCCCCCCchhhhHHHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHhhCC
Q 022901 157 VLGIRHMRRPAADFDPDSLRSQLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLTSKRP 236 (290)
Q Consensus 157 ~~gI~~l~iPi~D~~~~~l~~~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~~~Rp 236 (290)
+.||.|+++|+.|+.+|+. ..+.++++.++.+++ + |+|.|||++|.||||++++||||+..|+++.||++.||..||
T Consensus 113 ~~Gi~h~~l~f~Dg~tP~~-~~v~~fv~i~e~~~~-~-g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~Rp 189 (225)
T KOG1720|consen 113 DAGIDHHDLFFADGSTPTD-AIVKEFVKIVENAEK-G-GKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRICRP 189 (225)
T ss_pred ccCceeeeeecCCCCCCCH-HHHHHHHHHHHHHHh-c-CeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 7899999999999999877 577788899998887 5 799999999999999999999999999999999999999999
Q ss_pred C
Q 022901 237 C 237 (290)
Q Consensus 237 ~ 237 (290)
.
T Consensus 190 G 190 (225)
T KOG1720|consen 190 G 190 (225)
T ss_pred c
Confidence 7
No 12
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.76 E-value=6.9e-18 Score=143.41 Aligned_cols=142 Identities=18% Similarity=0.262 Sum_probs=87.1
Q ss_pred CCCceeecCCeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCC---c
Q 022901 98 GMNYTQITDNLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPD---S 174 (290)
Q Consensus 98 ~~~~~~I~~~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~---~ 174 (290)
+.||..|.++||.|++| ++.+++.|++ +|+++||+|+.+... .+..+.++++||+++++++.....+ .
T Consensus 4 P~nF~~V~~~vYRS~~P-~~~n~~fL~~-L~LKTII~L~~e~~~-------~~~~~f~~~~~I~l~~~~~~~~~~~~~~~ 74 (164)
T PF03162_consen 4 PLNFGMVEPGVYRSAQP-TPANFPFLER-LGLKTIINLRPEPPS-------QDFLEFAEENGIKLIHIPMSSSKDPWVPI 74 (164)
T ss_dssp -TT-EEEETTEEEESS---HHHHHHHHH-HT-SEEEE--SS----------HHHHHHHHHTT-EEEE-------GGG---
T ss_pred CccccCCCCCccCCCCC-ChhhHHHHHH-CCCceEEEecCCCCC-------HHHHHHHhhcCceEEEeccccccCccccC
Confidence 45899999999999999 5899999998 999999999986432 3345688999999999999876542 1
Q ss_pred hhhhHHHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHhhCCC---CCCHHHHHHHHHHH
Q 022901 175 LRSQLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLTSKRPC---GPNKTAIRGATYDL 251 (290)
Q Consensus 175 l~~~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~~~Rp~---~Pn~~f~~ql~~~l 251 (290)
..+.+.++++.| ++...+||||||..|.+|||+|++||. +.+||++.+|++..+.--.. .-+..|++.+..++
T Consensus 75 ~~~~v~~aL~~i---ld~~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~~~~~~~~~~fIe~f~~~~ 150 (164)
T PF03162_consen 75 SEEQVAEALEII---LDPRNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFAGPKIRYLDEQFIELFDVEL 150 (164)
T ss_dssp -HHHHHHHHHHH---H-GGG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHHGGG--HHHHHHHHT-----
T ss_pred CHHHHHHHHHHH---hCCCCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhcCCCCcHHHHHHHHhcCcce
Confidence 223344444443 343447999999999999999999999 79999999999988864322 22445555555444
Q ss_pred h
Q 022901 252 A 252 (290)
Q Consensus 252 ~ 252 (290)
.
T Consensus 151 ~ 151 (164)
T PF03162_consen 151 V 151 (164)
T ss_dssp -
T ss_pred e
Confidence 3
No 13
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.74 E-value=1.3e-17 Score=140.22 Aligned_cols=119 Identities=24% Similarity=0.318 Sum_probs=84.0
Q ss_pred cCCeEEccCCCC---------cccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCch
Q 022901 105 TDNLIVGSQPQK---------PEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSL 175 (290)
Q Consensus 105 ~~~LylGs~p~~---------~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l 175 (290)
...|.++.+|.. ..|++.|+. .|++.||+|.+..|...++. +++.+.+++.|+.++|+||+|...|+.
T Consensus 40 ~~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~-~G~~~Vvtl~~~~EL~~l~V--p~L~~~~~~~Gi~~~h~PI~D~~aPd~ 116 (168)
T PF05706_consen 40 SGFLGLTFLPGCKFKDWRRDLQADLERLKD-WGAQDVVTLLTDHELARLGV--PDLGEAAQARGIAWHHLPIPDGSAPDF 116 (168)
T ss_dssp SSEEEEES-TT-EETTEEB-HHHHHHHHHH-TT--EEEE-S-HHHHHHTT---TTHHHHHHHTT-EEEE----TTS---H
T ss_pred cceeeeecCCCcccccccchHHHHHHHHHH-CCCCEEEEeCcHHHHHHcCC--ccHHHHHHHcCCEEEecCccCCCCCCH
Confidence 356888888862 457778997 99999999999998887764 467899999999999999999999987
Q ss_pred hhhHHHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHHC-CCCHHHHH
Q 022901 176 RSQLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFC-GMKLDAAY 228 (290)
Q Consensus 176 ~~~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~~-g~s~~eA~ 228 (290)
. .+.+.++.|...++++ .+|+|||++|.||||+|++|+|+... ++++++|+
T Consensus 117 ~-~~~~i~~eL~~~L~~g-~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 117 A-AAWQILEELAARLENG-RKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp H-HHHHHHHHHHHHHHTT---EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred H-HHHHHHHHHHHHHHcC-CEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 4 4446788999999987 69999999999999999999998643 58999886
No 14
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.69 E-value=1e-15 Score=126.13 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=93.1
Q ss_pred ceeecCCeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCchhhhHH
Q 022901 101 YTQITDNLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSLRSQLP 180 (290)
Q Consensus 101 ~~~I~~~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l~~~l~ 180 (290)
+.+|++.+|+++++ ++.|++.|++ +||++||||+.+.|....+ +...+.+.+...|+.|+++|+...... . +.
T Consensus 2 ~~~i~~~~~~s~ql-t~~d~~~L~~-~GiktVIdlR~~~E~~~~p-~~~~~~~~a~~~gl~y~~iPv~~~~~~-~-~~-- 74 (135)
T TIGR01244 2 IRKLTEHLYVSPQL-TKADAAQAAQ-LGFKTVINNRPDREEESQP-DFAQIKAAAEAAGVTYHHQPVTAGDIT-P-DD-- 74 (135)
T ss_pred ceEcCCCeeEcCCC-CHHHHHHHHH-CCCcEEEECCCCCCCCCCC-CHHHHHHHHHHCCCeEEEeecCCCCCC-H-HH--
Confidence 46899999999999 6899999997 9999999999987754432 222233456678999999999864331 1 12
Q ss_pred HHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHhhCC
Q 022901 181 KAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLTSKRP 236 (290)
Q Consensus 181 ~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~~~Rp 236 (290)
+..+.+.++...+|||+||++|. ||+++.+.++. ..|++.+++++..+....
T Consensus 75 --v~~f~~~~~~~~~pvL~HC~sG~-Rt~~l~al~~~-~~g~~~~~i~~~~~~~G~ 126 (135)
T TIGR01244 75 --VETFRAAIGAAEGPVLAYCRSGT-RSSLLWGFRQA-AEGVPVEEIVRRAQAAGY 126 (135)
T ss_pred --HHHHHHHHHhCCCCEEEEcCCCh-HHHHHHHHHHH-HcCCCHHHHHHHHHHcCC
Confidence 33333334443479999999998 99886665554 689999999999987654
No 15
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.62 E-value=3.2e-15 Score=128.95 Aligned_cols=79 Identities=34% Similarity=0.493 Sum_probs=70.7
Q ss_pred hcCceEEEeeCCCCCCCchhhhHHHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHH-CCCCHHHHHHHHHhhC
Q 022901 157 VLGIRHMRRPAADFDPDSLRSQLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWF-CGMKLDAAYDMLTSKR 235 (290)
Q Consensus 157 ~~gI~~l~iPi~D~~~~~l~~~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~-~g~s~~eA~~~v~~~R 235 (290)
..++.++++|+.|+..+++ ..+.+++++|+.+++++ ++|+|||.+|+|||||+++||||.+ .++..++|+..++.+|
T Consensus 70 ~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g-~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r 147 (180)
T COG2453 70 NDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKG-KKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRR 147 (180)
T ss_pred cCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcC-CeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 4589999999999999988 78999999999999998 5999999999999999999999999 5666777888888888
Q ss_pred CC
Q 022901 236 PC 237 (290)
Q Consensus 236 p~ 237 (290)
+.
T Consensus 148 ~~ 149 (180)
T COG2453 148 PG 149 (180)
T ss_pred Cc
Confidence 75
No 16
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.61 E-value=5.5e-15 Score=117.45 Aligned_cols=103 Identities=25% Similarity=0.338 Sum_probs=66.8
Q ss_pred ceeecCCeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCchhhhHH
Q 022901 101 YTQITDNLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSLRSQLP 180 (290)
Q Consensus 101 ~~~I~~~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l~~~l~ 180 (290)
+.+|++.++++++| +++|++.|++ .|+++|||++.+.|.+.. .....+.+.+++.|+.|+++|+...... .+.
T Consensus 2 i~~i~~~~~vs~Q~-~~~d~~~la~-~GfktVInlRpd~E~~~q-p~~~~~~~~a~~~Gl~y~~iPv~~~~~~--~~~-- 74 (110)
T PF04273_consen 2 IRQISDDLSVSGQP-SPEDLAQLAA-QGFKTVINLRPDGEEPGQ-PSSAEEAAAAEALGLQYVHIPVDGGAIT--EED-- 74 (110)
T ss_dssp -EEEETTEEEECS---HHHHHHHHH-CT--EEEE-S-TTSTTT--T-HHCHHHHHHHCT-EEEE----TTT----HHH--
T ss_pred CEecCCCeEECCCC-CHHHHHHHHH-CCCcEEEECCCCCCCCCC-CCHHHHHHHHHHcCCeEEEeecCCCCCC--HHH--
Confidence 67899999999999 6999999998 999999999998775432 2345577889999999999999975322 222
Q ss_pred HHHHHHHHHHhcCCceEEEEcCCCCChHHHHHH
Q 022901 181 KAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAI 213 (290)
Q Consensus 181 ~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvvi 213 (290)
+..+.+++.+..+|||+||+.| .|++++..
T Consensus 75 --v~~f~~~l~~~~~Pvl~hC~sG-~Ra~~l~~ 104 (110)
T PF04273_consen 75 --VEAFADALESLPKPVLAHCRSG-TRASALWA 104 (110)
T ss_dssp --HHHHHHHHHTTTTSEEEE-SCS-HHHHHHHH
T ss_pred --HHHHHHHHHhCCCCEEEECCCC-hhHHHHHH
Confidence 3444455555457999999999 59976544
No 17
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.51 E-value=5.3e-13 Score=105.65 Aligned_cols=124 Identities=20% Similarity=0.217 Sum_probs=98.8
Q ss_pred CCceeecCCeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCchhhh
Q 022901 99 MNYTQITDNLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSLRSQ 178 (290)
Q Consensus 99 ~~~~~I~~~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l~~~ 178 (290)
|.+.+|.+.+.+++++ +..|+..++. .|++.|||.+.+.|.+.. .+...+.+.+++.|+.|.++|+......
T Consensus 1 M~i~~I~d~lsVsgQi-~~~D~~~iaa-~GFksiI~nRPDgEe~~Q-P~~~~i~~aa~~aGl~y~~iPV~~~~iT----- 72 (130)
T COG3453 1 MDIRRINDRLSVSGQI-SPADIASIAA-LGFKSIICNRPDGEEPGQ-PGFAAIAAAAEAAGLTYTHIPVTGGGIT----- 72 (130)
T ss_pred CCceecccceeecCCC-CHHHHHHHHH-hccceecccCCCCCCCCC-CChHHHHHHHHhcCCceEEeecCCCCCC-----
Confidence 4578999999999999 5899999998 999999999999887654 4567788999999999999999976544
Q ss_pred HHHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHh
Q 022901 179 LPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLTS 233 (290)
Q Consensus 179 l~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~~ 233 (290)
+..|+...+++.+-++|||.||+.| .||.+ ....--...||+.+++.++=++
T Consensus 73 -~~dV~~f~~Al~eaegPVlayCrsG-tRs~~-ly~~~~~~~gm~~de~~a~g~a 124 (130)
T COG3453 73 -EADVEAFQRALDEAEGPVLAYCRSG-TRSLN-LYGLGELDGGMSRDEIEALGQA 124 (130)
T ss_pred -HHHHHHHHHHHHHhCCCEEeeecCC-chHHH-HHHHHHHhcCCCHHHHHHHHHh
Confidence 2335555556666568999999999 79955 4444446789999988766544
No 18
>PLN02727 NAD kinase
Probab=99.45 E-value=6.2e-13 Score=135.87 Aligned_cols=110 Identities=17% Similarity=0.179 Sum_probs=88.1
Q ss_pred CCeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCchhhhHHHHHHH
Q 022901 106 DNLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSLRSQLPKAVSL 185 (290)
Q Consensus 106 ~~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l~~~l~~av~~ 185 (290)
-.+|++++| ++++++.|.+ .||++||||+++.+. .+.....+.+.|++.|++|+++|+.+...+.. +.+.++.+.
T Consensus 261 ~~~~rsgQp-spe~la~LA~-~GfKTIINLRpd~E~--~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~-EqVe~fa~~ 335 (986)
T PLN02727 261 AAFWRGGQV-TEEGLKWLLE-KGFKTIVDLRAEIVK--DNFYQAAVDDAISSGKIEVVKIPVEVRTAPSA-EQVEKFASL 335 (986)
T ss_pred eeEEEeCCC-CHHHHHHHHH-CCCeEEEECCCCCcC--CCchhHHHHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHHHH
Confidence 357999999 6999999998 899999999998773 23345567899999999999999987665544 455555666
Q ss_pred HHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 186 LEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 186 I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
+++ .-++|||+||+.|.+|+|++++||+....+..
T Consensus 336 l~~---slpkPVLvHCKSGarRAGamvA~yl~~~~~~~ 370 (986)
T PLN02727 336 VSD---SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSA 370 (986)
T ss_pred HHh---hcCCCEEEECCCCCchHHHHHHHHHHHHcccc
Confidence 633 22369999999999999999999999877754
No 19
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.42 E-value=3.8e-12 Score=102.88 Aligned_cols=118 Identities=26% Similarity=0.301 Sum_probs=91.8
Q ss_pred HHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCchhhhHHHHHHHHHHHHhcCC-ceEE
Q 022901 120 IDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSLRSQLPKAVSLLEWAISEGK-GKVY 198 (290)
Q Consensus 120 ~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l~~~l~~av~~I~~~l~~~~-~~VL 198 (290)
++.|++ +|+++||-++++... . ...++.||..+..|+.|..+++- ..+.+..+.+.-...+.. ..|-
T Consensus 34 ieELkK-ygvttvVRVCe~TYd---t-------~~lek~GI~Vldw~f~dg~ppp~-qvv~~w~~l~~~~f~e~p~~cva 101 (173)
T KOG2836|consen 34 IEELKK-YGVTTVVRVCEPTYD---T-------TPLEKEGITVLDWPFDDGAPPPN-QVVDDWLSLVKTKFREEPGCCVA 101 (173)
T ss_pred HHHHHh-cCCeEEEEecccccC---C-------chhhhcCceEeecccccCCCCch-HHHHHHHHHHHHHHhhCCCCeEE
Confidence 467887 999999999987432 1 12357899999999999877655 455566666555555543 4899
Q ss_pred EEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 022901 199 VHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLTSKRPCGPNKTAIRGATYD 250 (290)
Q Consensus 199 VHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~~~Rp~~Pn~~f~~ql~~~ 250 (290)
|||.+|+||++.+|+.-|+ ..||.+++|+++++.+|....|.-.+.-+..+
T Consensus 102 vhcvaglgrapvlvalali-e~gmkyedave~ir~krrga~n~kql~~leky 152 (173)
T KOG2836|consen 102 VHCVAGLGRAPVLVALALI-EAGMKYEDAVEMIRQKRRGAINSKQLLYLEKY 152 (173)
T ss_pred EEeecccCcchHHHHHHHH-HccccHHHHHHHHHHHhhccccHHHHHHHHHh
Confidence 9999999999998888887 89999999999999999888777655544433
No 20
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.28 E-value=1.4e-11 Score=104.47 Aligned_cols=117 Identities=21% Similarity=0.296 Sum_probs=64.9
Q ss_pred eecCC-eEEccCCC--CcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCc---hh
Q 022901 103 QITDN-LIVGSQPQ--KPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDS---LR 176 (290)
Q Consensus 103 ~I~~~-LylGs~p~--~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~---l~ 176 (290)
.|.++ ||.++.+. +++|.+.|.+ +||++||+|+.+.|....+... ..|+.++++|+.+..... +.
T Consensus 15 ~ir~g~lyRS~~l~~lt~~d~~~L~~-lgI~tIiDLRs~~E~~~~p~~~--------~~g~~~~~~p~~~~~~~~~~~~~ 85 (164)
T PF13350_consen 15 RIRPGRLYRSGNLSNLTEADLERLRE-LGIRTIIDLRSPTERERAPDPL--------IDGVQYVHIPIFGDDASSPDKLA 85 (164)
T ss_dssp TS-TTSEEEES--TT--HHHHHHHHH-TT--EEEE-S-HHHHHHHS------------TT-EEEE--SS-S-TTH-----
T ss_pred eecCCcEEecCCcCcCCHHHHHHHHh-CCCCEEEECCCccccccCCCCC--------cCCceeeeecccccccccccccc
Confidence 45555 88888876 5688889996 9999999999987755432111 238999999998766552 10
Q ss_pred ---------------------hhHHHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHH
Q 022901 177 ---------------------SQLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYD 229 (290)
Q Consensus 177 ---------------------~~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~ 229 (290)
..-..++..+.+.+....+||||||++|++|||.+ +|.|+...|++.++.++
T Consensus 86 ~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~-~alll~~lGV~~~~I~~ 158 (164)
T PF13350_consen 86 ELLQSSADAPRGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVV-AALLLSLLGVPDEDIIA 158 (164)
T ss_dssp -----HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHH-HHHHHHHTT--HHHHHH
T ss_pred cccccccchhhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHH-HHHHHHHcCCCHHHHHH
Confidence 00023344444444444479999999999999774 45555699999988654
No 21
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=99.28 E-value=4.4e-11 Score=105.34 Aligned_cols=125 Identities=16% Similarity=0.240 Sum_probs=97.9
Q ss_pred CCCceeecCCeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCC------
Q 022901 98 GMNYTQITDNLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFD------ 171 (290)
Q Consensus 98 ~~~~~~I~~~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~------ 171 (290)
.++|+.|.+.||.|++|. +.++..|+. ++.++||.|+.+. + ++.-..+++.++|++++|.+...-
T Consensus 57 PlnFs~V~~~lyRSg~P~-~~NfsFL~~-L~LksIisL~pE~---y----p~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P 127 (249)
T KOG1572|consen 57 PLNFSMVDNGLYRSGFPR-PENFSFLKT-LHLKSIISLCPEP---Y----PEENLNFLESNGIKLYQIGIEGEKDNKKEP 127 (249)
T ss_pred CccccccccceeecCCCC-ccchHHHHH-hhhheEEEecCCC---C----ChHHHHHHHhcCceEEEEecccccccccCC
Confidence 568999999999999995 899999998 9999999999984 2 222346899999999999997544
Q ss_pred -CCchhhhHHHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHhhC
Q 022901 172 -PDSLRSQLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLTSKR 235 (290)
Q Consensus 172 -~~~l~~~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~~~R 235 (290)
.+...+.+..++++ .+.....|+||||+.|..|+|++|.|.- +.++|++.-.++..+..-
T Consensus 128 ~~~~~~~~i~~~l~~---lld~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~fa 188 (249)
T KOG1572|consen 128 FVNIPDHSIRKALKV---LLDKRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRFA 188 (249)
T ss_pred CCCChHHHHHHHHHH---HhcccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHhc
Confidence 22233344555555 4555557999999999999999887766 899999988777666544
No 22
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.15 E-value=5.8e-10 Score=85.93 Aligned_cols=84 Identities=15% Similarity=0.191 Sum_probs=63.7
Q ss_pred eEEEeeCCCCCCCchhhhHHHHHHHHHHHHhc--CCceEEEEcCCCCChHHHHHHHHHHHHC------CCCHHHHHHHHH
Q 022901 161 RHMRRPAADFDPDSLRSQLPKAVSLLEWAISE--GKGKVYVHCTAGLGRAPAVAIAYMFWFC------GMKLDAAYDMLT 232 (290)
Q Consensus 161 ~~l~iPi~D~~~~~l~~~l~~av~~I~~~l~~--~~~~VLVHC~aG~~RS~tvviaYLm~~~------g~s~~eA~~~v~ 232 (290)
.+...+++|...|...+.+.+++..+...... .++||+|||.+|+||||+++++|++... -.++.+++..++
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 35666888887776656676777777766542 1369999999999999999999988653 267889999999
Q ss_pred hhCCC-CCCHHHH
Q 022901 233 SKRPC-GPNKTAI 244 (290)
Q Consensus 233 ~~Rp~-~Pn~~f~ 244 (290)
..|+. ..+....
T Consensus 84 ~~r~~~~~~~~q~ 96 (105)
T smart00012 84 KQRPGMVQTFEQY 96 (105)
T ss_pred hhhhhhCCcHHHH
Confidence 99987 5444333
No 23
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.15 E-value=5.8e-10 Score=85.93 Aligned_cols=84 Identities=15% Similarity=0.191 Sum_probs=63.7
Q ss_pred eEEEeeCCCCCCCchhhhHHHHHHHHHHHHhc--CCceEEEEcCCCCChHHHHHHHHHHHHC------CCCHHHHHHHHH
Q 022901 161 RHMRRPAADFDPDSLRSQLPKAVSLLEWAISE--GKGKVYVHCTAGLGRAPAVAIAYMFWFC------GMKLDAAYDMLT 232 (290)
Q Consensus 161 ~~l~iPi~D~~~~~l~~~l~~av~~I~~~l~~--~~~~VLVHC~aG~~RS~tvviaYLm~~~------g~s~~eA~~~v~ 232 (290)
.+...+++|...|...+.+.+++..+...... .++||+|||.+|+||||+++++|++... -.++.+++..++
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 35666888887776656676777777766542 1369999999999999999999988653 267889999999
Q ss_pred hhCCC-CCCHHHH
Q 022901 233 SKRPC-GPNKTAI 244 (290)
Q Consensus 233 ~~Rp~-~Pn~~f~ 244 (290)
..|+. ..+....
T Consensus 84 ~~r~~~~~~~~q~ 96 (105)
T smart00404 84 KQRPGMVQTFEQY 96 (105)
T ss_pred hhhhhhCCcHHHH
Confidence 99987 5444333
No 24
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=99.11 E-value=2.3e-11 Score=117.42 Aligned_cols=123 Identities=28% Similarity=0.340 Sum_probs=92.3
Q ss_pred CCCCceeecCCeEEccCCCCcccHHHHHhhCCccE--------------EEEcCCCCCccccCCCchhHHHHHHhcCceE
Q 022901 97 LGMNYTQITDNLIVGSQPQKPEDIDHLKQEERVAY--------------ILNLQQDKDIEYWGIDLKPIVERCQVLGIRH 162 (290)
Q Consensus 97 ~~~~~~~I~~~LylGs~p~~~~d~~~L~~~~gI~~--------------VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~ 162 (290)
.+++++.|+++|++.++|. +..+.+.+ ..+.- |.||+.+ ..|... ...-..
T Consensus 11 ~DLDltYIT~rIIamsfPa--~~~es~yR-N~l~dV~~fL~s~H~~~y~vyNL~~e--r~yd~~----------~f~g~V 75 (434)
T KOG2283|consen 11 FDLDLTYITSRIIAMSFPA--EGIESLYR-NNLEDVVLFLDSKHKDHYKVYNLSSE--RLYDPS----------RFHGRV 75 (434)
T ss_pred ccccceeeeeeEEEEeCCC--Ccchhhhc-CCHHHHHHHHhhccCCceEEEecCcc--ccCCcc----------ccccce
Confidence 3566899999999999994 34444443 33322 5666652 222111 122346
Q ss_pred EEeeCCCCCCCchhhhHHHHHHHHHHHHhcCC-ceEEEEcCCCCChHHHHHHHHHHHHCCCC-HHHHHHHHHhhC
Q 022901 163 MRRPAADFDPDSLRSQLPKAVSLLEWAISEGK-GKVYVHCTAGLGRAPAVAIAYMFWFCGMK-LDAAYDMLTSKR 235 (290)
Q Consensus 163 l~iPi~D~~~~~l~~~l~~av~~I~~~l~~~~-~~VLVHC~aG~~RS~tvviaYLm~~~g~s-~~eA~~~v~~~R 235 (290)
..+++.|..+|++ +.+..+++-++.++.+.. ..|.|||++|++|||++++|||++..-.. +++|++++..+|
T Consensus 76 ~~~~~~Dh~~P~L-~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR 149 (434)
T KOG2283|consen 76 ARFGFDDHNPPPL-ELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKR 149 (434)
T ss_pred eecCCCCCCCCcH-HHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhh
Confidence 6799999999988 577788999999998753 58999999999999999999999766655 999999999999
No 25
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.91 E-value=6.8e-09 Score=92.30 Aligned_cols=84 Identities=19% Similarity=0.262 Sum_probs=61.9
Q ss_pred cCceEEEee-CCCCCCCchhhhHHHHHHHHHHHHh-cCCceEEEEcCCCCChHHHHHHHHHHHHC-----CCCHHHHHHH
Q 022901 158 LGIRHMRRP-AADFDPDSLRSQLPKAVSLLEWAIS-EGKGKVYVHCTAGLGRAPAVAIAYMFWFC-----GMKLDAAYDM 230 (290)
Q Consensus 158 ~gI~~l~iP-i~D~~~~~l~~~l~~av~~I~~~l~-~~~~~VLVHC~aG~~RS~tvviaYLm~~~-----g~s~~eA~~~ 230 (290)
+.+.|+++. ++|...++..+.+.+++..+..... .+.+||+|||.+|.||||++++++++... .+++.+|+..
T Consensus 128 ~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~ 207 (231)
T cd00047 128 RTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKE 207 (231)
T ss_pred eEEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 346666664 6787777665556566666665543 12369999999999999999998875433 6899999999
Q ss_pred HHhhCCC-CCCH
Q 022901 231 LTSKRPC-GPNK 241 (290)
Q Consensus 231 v~~~Rp~-~Pn~ 241 (290)
+|+.|+. ..+.
T Consensus 208 iR~~R~~~v~~~ 219 (231)
T cd00047 208 LRSQRPGMVQTE 219 (231)
T ss_pred HHhccccccCCH
Confidence 9999997 4443
No 26
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.78 E-value=3.3e-08 Score=89.43 Aligned_cols=84 Identities=19% Similarity=0.250 Sum_probs=59.9
Q ss_pred ceEEEe-eCCCCCCCchhhhHHHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHH-----CCCCHHHHHHHHHh
Q 022901 160 IRHMRR-PAADFDPDSLRSQLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWF-----CGMKLDAAYDMLTS 233 (290)
Q Consensus 160 I~~l~i-Pi~D~~~~~l~~~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~-----~g~s~~eA~~~v~~ 233 (290)
+.|+++ .++|...|.....+.+.+..+........+||+|||.+|.||||++++++++.. ...++.+++..+|.
T Consensus 158 v~~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~ 237 (258)
T smart00194 158 VTHYHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRS 237 (258)
T ss_pred EEEEeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 444444 566777774444555556666655443236999999999999999999887632 46899999999999
Q ss_pred hCCC-CCCHHH
Q 022901 234 KRPC-GPNKTA 243 (290)
Q Consensus 234 ~Rp~-~Pn~~f 243 (290)
.|+. ..+...
T Consensus 238 ~R~~~v~~~~Q 248 (258)
T smart00194 238 QRPGMVQTEEQ 248 (258)
T ss_pred ccccccCCHHH
Confidence 9998 444433
No 27
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.72 E-value=1.5e-07 Score=78.00 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=83.0
Q ss_pred HHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHh--cCceEEEeeCCCCC-CCchhhhHHHHHHHHHHHHhcCCceEE
Q 022901 122 HLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQV--LGIRHMRRPAADFD-PDSLRSQLPKAVSLLEWAISEGKGKVY 198 (290)
Q Consensus 122 ~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~--~gI~~l~iPi~D~~-~~~l~~~l~~av~~I~~~l~~~~~~VL 198 (290)
...+ .|-+++|+|............. ..+ ..+.+-.|-..|.+ ..+-..++...++|++++=+. .++|
T Consensus 27 ~~~r-h~~t~mlsl~a~~t~~~~pa~~------~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~--apll 97 (172)
T COG5350 27 TAAR-HGPTHMLSLLAKGTYFHRPAVI------AAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF--APLL 97 (172)
T ss_pred HHhh-cCCceEEEeecccccccCcccc------chhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc--ccee
Confidence 3334 8999999998863322211111 111 12223333333333 334456888899999987543 4999
Q ss_pred EEcCCCCChHHHHHHH-HHHHHCCCCHHHHHHHHHhhCCC-CCCHHHHHHHHHHHhh
Q 022901 199 VHCTAGLGRAPAVAIA-YMFWFCGMKLDAAYDMLTSKRPC-GPNKTAIRGATYDLAK 253 (290)
Q Consensus 199 VHC~aG~~RS~tvvia-YLm~~~g~s~~eA~~~v~~~Rp~-~Pn~~f~~ql~~~l~~ 253 (290)
|||.+|+|||+++++. -|.-...++..+..+.++..+|. .||+..+.-+...|..
T Consensus 98 IHC~aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~RliaI~d~~l~r 154 (172)
T COG5350 98 IHCYAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIAIADAALGR 154 (172)
T ss_pred eeeccccccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHHHHHHHHhh
Confidence 9999999999885533 45557899999999999999998 7999998877665544
No 28
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.58 E-value=2e-07 Score=84.51 Aligned_cols=132 Identities=24% Similarity=0.202 Sum_probs=75.1
Q ss_pred eeecCCeEEccCCCCcccHH-HHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCchhhhHH
Q 022901 102 TQITDNLIVGSQPQKPEDID-HLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSLRSQLP 180 (290)
Q Consensus 102 ~~I~~~LylGs~p~~~~d~~-~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l~~~l~ 180 (290)
..+....|.+++|. +.+.. .+...+++..++++..+....-.-..-..+ ......++....++....... ..+
T Consensus 49 ~i~~~~~~Rs~~p~-~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~e 122 (249)
T COG2365 49 GIIPIIDYRSGQPV-PVQPDPELLDALYLKTIINLRDESNTNVELYTDHLI-NWDKAAIIMFESYRSFPTRED----AAE 122 (249)
T ss_pred cccceeEcCCCCcc-cccCCccccccccccccccccccchhhhhhhhhhhh-hhccccchhhhhhccCccchh----hHH
Confidence 44455588899985 44444 333348999999999722111100000000 001112222222222211111 223
Q ss_pred HHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHhhCCCCC
Q 022901 181 KAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLTSKRPCGP 239 (290)
Q Consensus 181 ~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~~~Rp~~P 239 (290)
..+..+.-.+..+++|||+||++|+.|+|.++++|+....+.....+-+++...++..+
T Consensus 123 ~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~ 181 (249)
T COG2365 123 RLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEP 181 (249)
T ss_pred HHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccch
Confidence 33444444444433799999999999999999999986666666678888888877744
No 29
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.54 E-value=1.7e-07 Score=78.43 Aligned_cols=64 Identities=20% Similarity=0.336 Sum_probs=46.6
Q ss_pred HHHHHHhcCceEEEeeCCCCCCCchhhhHHHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHH
Q 022901 151 IVERCQVLGIRHMRRPAADFDPDSLRSQLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMF 217 (290)
Q Consensus 151 i~~~~~~~gI~~l~iPi~D~~~~~l~~~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm 217 (290)
..+.++..|+.|++||+.|...|.- +.++..++++... .++ ..+.+||.+|.|||.+.++.|.|
T Consensus 84 e~~~~~~~g~~Y~Ripitd~~~P~~-~~iD~fi~~v~~~-p~~-~~l~fhC~~G~GRTTt~Mv~~~l 147 (149)
T PF14566_consen 84 EEELVEGNGLRYYRIPITDHQAPDP-EDIDAFINFVKSL-PKD-TWLHFHCQAGRGRTTTFMVMYDL 147 (149)
T ss_dssp HHHHHHHTT-EEEEEEE-TTS---H-HHHHHHHHHHHTS--TT--EEEEE-SSSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEeCCCcCCCCH-HHHHHHHHHHHhC-CCC-CeEEEECCCCCCHHHHHHHHHHH
Confidence 3466778899999999999977655 6788888888776 443 58999999999999998887765
No 30
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.40 E-value=1.7e-06 Score=84.42 Aligned_cols=87 Identities=18% Similarity=0.190 Sum_probs=59.2
Q ss_pred ceEEEe-eCCCCCCCchhhhHHHHHHHHHHHHhcC--------CceEEEEcCCCCChHHHHHHHHHHHHCC-CCHHHHHH
Q 022901 160 IRHMRR-PAADFDPDSLRSQLPKAVSLLEWAISEG--------KGKVYVHCTAGLGRAPAVAIAYMFWFCG-MKLDAAYD 229 (290)
Q Consensus 160 I~~l~i-Pi~D~~~~~l~~~l~~av~~I~~~l~~~--------~~~VLVHC~aG~~RS~tvviaYLm~~~g-~s~~eA~~ 229 (290)
|.++|+ .++|+..++....+...++.+......+ ++..+|||.+|+||||+++++|++...+ .++++.+.
T Consensus 423 V~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~ 502 (535)
T PRK15375 423 IPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRA 502 (535)
T ss_pred EEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHH
Confidence 455555 5688887655444555566665542211 1224799999999999999999986544 58999999
Q ss_pred HHHhhCCC--CCCHHHHHH
Q 022901 230 MLTSKRPC--GPNKTAIRG 246 (290)
Q Consensus 230 ~v~~~Rp~--~Pn~~f~~q 246 (290)
.+|..|+. .-....+..
T Consensus 503 dlR~qRng~MVQt~eQy~~ 521 (535)
T PRK15375 503 DFRNSRNNRMLEDASQFVQ 521 (535)
T ss_pred HHHhcCCccccccHHHHHH
Confidence 99999986 344444444
No 31
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.37 E-value=2.9e-06 Score=74.71 Aligned_cols=85 Identities=14% Similarity=0.194 Sum_probs=59.3
Q ss_pred ceEEEe-eCCCCCCCchhhhHHHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHH-----CCCCHHHHHHHHHh
Q 022901 160 IRHMRR-PAADFDPDSLRSQLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWF-----CGMKLDAAYDMLTS 233 (290)
Q Consensus 160 I~~l~i-Pi~D~~~~~l~~~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~-----~g~s~~eA~~~v~~ 233 (290)
+.++++ .+.|...|.....+-.+++.+........+||+|||.+|.||||+++++.++.. ...+..+++..+++
T Consensus 135 v~~~~~~~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~ 214 (235)
T PF00102_consen 135 VTHFHYTNWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQ 214 (235)
T ss_dssp EEEEEEESSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHT
T ss_pred ccceeeeeccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHh
Confidence 344444 566666554344454556666655533447999999999999999888887632 25699999999999
Q ss_pred hCCC-CCCHHHH
Q 022901 234 KRPC-GPNKTAI 244 (290)
Q Consensus 234 ~Rp~-~Pn~~f~ 244 (290)
.|+. ..+....
T Consensus 215 ~R~~~i~~~~qy 226 (235)
T PF00102_consen 215 QRPGAIQSPEQY 226 (235)
T ss_dssp TSTTSSSSHHHH
T ss_pred hCCCccCCHHHH
Confidence 9998 5555443
No 32
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.32 E-value=4.4e-06 Score=77.80 Aligned_cols=78 Identities=21% Similarity=0.128 Sum_probs=51.7
Q ss_pred ceEEEe-eCCCCCCCchhhhHHHHHHHHHHHHhc-----------CCceEEEEcCCCCChHHHHHHHHHHH-----HCCC
Q 022901 160 IRHMRR-PAADFDPDSLRSQLPKAVSLLEWAISE-----------GKGKVYVHCTAGLGRAPAVAIAYMFW-----FCGM 222 (290)
Q Consensus 160 I~~l~i-Pi~D~~~~~l~~~l~~av~~I~~~l~~-----------~~~~VLVHC~aG~~RS~tvviaYLm~-----~~g~ 222 (290)
+.|+++ .++|.+.|.....|-+.+..+.+.... ..+||+|||.+|+||||++++...+. ....
T Consensus 183 V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v 262 (303)
T PHA02742 183 IKHFAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAII 262 (303)
T ss_pred EEEEEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCC
Confidence 444444 667887775544444444444432110 12699999999999999977665432 1245
Q ss_pred CHHHHHHHHHhhCCC
Q 022901 223 KLDAAYDMLTSKRPC 237 (290)
Q Consensus 223 s~~eA~~~v~~~Rp~ 237 (290)
++-+++..+|..|+.
T Consensus 263 ~v~~~V~~lR~qR~~ 277 (303)
T PHA02742 263 PLLSIVRDLRKQRHN 277 (303)
T ss_pred CHHHHHHHHHhhccc
Confidence 788999999999997
No 33
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.28 E-value=5.5e-06 Score=76.98 Aligned_cols=93 Identities=6% Similarity=-0.034 Sum_probs=57.3
Q ss_pred ceEEEe-eCCCCCCCchhhhHHHHHHHHHHHH--------hcCCceEEEEcCCCCChHHHHHHHHHHH-----HCCCCHH
Q 022901 160 IRHMRR-PAADFDPDSLRSQLPKAVSLLEWAI--------SEGKGKVYVHCTAGLGRAPAVAIAYMFW-----FCGMKLD 225 (290)
Q Consensus 160 I~~l~i-Pi~D~~~~~l~~~l~~av~~I~~~l--------~~~~~~VLVHC~aG~~RS~tvviaYLm~-----~~g~s~~ 225 (290)
|.|+++ .++|++.|.....|-+.+..+.+.. ..+.+|++|||.+|+||||++++..... ....++.
T Consensus 178 V~Hfqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~ 257 (298)
T PHA02740 178 ISHFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIA 257 (298)
T ss_pred EEEEeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHH
Confidence 444433 6778877744433433333333221 1123699999999999999977655432 3356899
Q ss_pred HHHHHHHhhCCC-CCCH---HHHHHHHHHHh
Q 022901 226 AAYDMLTSKRPC-GPNK---TAIRGATYDLA 252 (290)
Q Consensus 226 eA~~~v~~~Rp~-~Pn~---~f~~ql~~~l~ 252 (290)
+++..+|..|+. .... .|.-++...++
T Consensus 258 ~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~yl 288 (298)
T PHA02740 258 NALKKVRQKKYGCMNCLDDYVFCYHLIAAYL 288 (298)
T ss_pred HHHHHHHhhCccccCCHHHHHHHHHHHHHHH
Confidence 999999999997 3333 34444444443
No 34
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.26 E-value=6.4e-06 Score=77.06 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=53.2
Q ss_pred ceEEEe-eCCCCCCCchhhhHHHHHHHHHHHHh---c-------CCceEEEEcCCCCChHHHHHHHHHHH-----HCCCC
Q 022901 160 IRHMRR-PAADFDPDSLRSQLPKAVSLLEWAIS---E-------GKGKVYVHCTAGLGRAPAVAIAYMFW-----FCGMK 223 (290)
Q Consensus 160 I~~l~i-Pi~D~~~~~l~~~l~~av~~I~~~l~---~-------~~~~VLVHC~aG~~RS~tvviaYLm~-----~~g~s 223 (290)
+.|+++ -++|++.|.....|-+.+..+..... . ..+||+|||.+|+||||++++...+. ....+
T Consensus 184 V~h~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~ 263 (312)
T PHA02747 184 ISHFQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAIC 263 (312)
T ss_pred EEEEEECCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCC
Confidence 444443 67787777543334333443433221 1 12599999999999999987765422 23668
Q ss_pred HHHHHHHHHhhCCC-CCCH
Q 022901 224 LDAAYDMLTSKRPC-GPNK 241 (290)
Q Consensus 224 ~~eA~~~v~~~Rp~-~Pn~ 241 (290)
+.+++..+|..|+. ..+.
T Consensus 264 v~~~V~~lR~qR~~~Vqt~ 282 (312)
T PHA02747 264 LAKTAEKIREQRHAGIMNF 282 (312)
T ss_pred HHHHHHHHHhccccccCCH
Confidence 89999999999997 4443
No 35
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.19 E-value=1e-05 Score=76.04 Aligned_cols=78 Identities=18% Similarity=0.173 Sum_probs=51.7
Q ss_pred ceEEEe-eCCCCCCCchhhhHHHHHHHHHHHHh-------cC---CceEEEEcCCCCChHHHHHHHHHHH-----HCCCC
Q 022901 160 IRHMRR-PAADFDPDSLRSQLPKAVSLLEWAIS-------EG---KGKVYVHCTAGLGRAPAVAIAYMFW-----FCGMK 223 (290)
Q Consensus 160 I~~l~i-Pi~D~~~~~l~~~l~~av~~I~~~l~-------~~---~~~VLVHC~aG~~RS~tvviaYLm~-----~~g~s 223 (290)
+.|+++ -++|.+.|.....|-+.+..+.+... .+ .+||+|||.+|+||||++++...+. ....+
T Consensus 202 V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vd 281 (323)
T PHA02746 202 IHHFWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVC 281 (323)
T ss_pred EEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCC
Confidence 444444 56787776544444444444443221 11 2699999999999999977654322 23578
Q ss_pred HHHHHHHHHhhCCC
Q 022901 224 LDAAYDMLTSKRPC 237 (290)
Q Consensus 224 ~~eA~~~v~~~Rp~ 237 (290)
+-+++..+|..|+.
T Consensus 282 v~~~V~~lR~qR~~ 295 (323)
T PHA02746 282 LGEIVLKIRKQRHS 295 (323)
T ss_pred HHHHHHHHHhcccc
Confidence 99999999999997
No 36
>PHA02738 hypothetical protein; Provisional
Probab=98.11 E-value=1.8e-05 Score=74.24 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=51.7
Q ss_pred ceEEEe-eCCCCCCCchhhhHHHHHHHHHHHHh--------c-----CCceEEEEcCCCCChHHHHHHHHH-HH----HC
Q 022901 160 IRHMRR-PAADFDPDSLRSQLPKAVSLLEWAIS--------E-----GKGKVYVHCTAGLGRAPAVAIAYM-FW----FC 220 (290)
Q Consensus 160 I~~l~i-Pi~D~~~~~l~~~l~~av~~I~~~l~--------~-----~~~~VLVHC~aG~~RS~tvviaYL-m~----~~ 220 (290)
|.|+++ .++|.+.|.....|-+.+..+..... . +.+||+|||.+|+||||++++... +. ..
T Consensus 179 V~h~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~ 258 (320)
T PHA02738 179 VTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDACA 258 (320)
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhcC
Confidence 444444 67888777554444444444443211 0 125999999999999999665543 22 23
Q ss_pred CCCHHHHHHHHHhhCCCC
Q 022901 221 GMKLDAAYDMLTSKRPCG 238 (290)
Q Consensus 221 g~s~~eA~~~v~~~Rp~~ 238 (290)
..++.+++..+|..|+..
T Consensus 259 ~vdv~~~V~~lR~qR~~~ 276 (320)
T PHA02738 259 TVSIPSIVSSIRNQRYYS 276 (320)
T ss_pred CcCHHHHHHHHHhhhhhc
Confidence 568899999999999973
No 37
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=98.10 E-value=6.3e-06 Score=78.48 Aligned_cols=116 Identities=19% Similarity=0.224 Sum_probs=79.9
Q ss_pred CCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCchhhhHHHHHHHHHHHHh---cCCceEEEEcCC
Q 022901 127 ERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSLRSQLPKAVSLLEWAIS---EGKGKVYVHCTA 203 (290)
Q Consensus 127 ~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l~~~l~~av~~I~~~l~---~~~~~VLVHC~a 203 (290)
.-|.-+++|.... .|. .. ....++|+.|+.+........+-.......+..+..... ..+.-|+|||++
T Consensus 62 ~~vgl~iDltnt~--ryy-~~-----~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcth 133 (393)
T KOG2386|consen 62 YKVGLKIDLTNTL--RYY-DK-----PELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTH 133 (393)
T ss_pred ceEEEEEecccee--eee-cc-----ccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCC
Confidence 3456678887653 232 11 234578999999988876633222333333444444333 223589999999
Q ss_pred CCChHHHHHHHHHHHHCCCCHHHHHHHHHhhCCC-CCCHHHHHHHHHH
Q 022901 204 GLGRAPAVAIAYMFWFCGMKLDAAYDMLTSKRPC-GPNKTAIRGATYD 250 (290)
Q Consensus 204 G~~RS~tvviaYLm~~~g~s~~eA~~~v~~~Rp~-~Pn~~f~~ql~~~ 250 (290)
|++|++-++++||+...+|+..+|++.+...|+. .-...++..+...
T Consensus 134 G~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~ 181 (393)
T KOG2386|consen 134 GLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSR 181 (393)
T ss_pred cccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhc
Confidence 9999999999999999999999999999999987 4445555555443
No 38
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=98.08 E-value=1.2e-05 Score=83.68 Aligned_cols=147 Identities=13% Similarity=0.169 Sum_probs=93.2
Q ss_pred CCeEE---ccCCCCcccHHHHHhhCCccEEEEcCCCCCc------cccCCCc-hh--------------HHHHH------
Q 022901 106 DNLIV---GSQPQKPEDIDHLKQEERVAYILNLQQDKDI------EYWGIDL-KP--------------IVERC------ 155 (290)
Q Consensus 106 ~~Lyl---Gs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~------~~~g~~~-~~--------------i~~~~------ 155 (290)
.+.|| |..|.+-.|+-...=+.|++.|+=|+++.|. .||.... ++ -...|
T Consensus 937 e~~YIA~QGPLp~T~~DFWQMVWEQ~~~lIvMlT~e~EggR~KchqYWPr~~~~t~~ygrf~v~~~~~~~t~~y~tr~m~ 1016 (1144)
T KOG0792|consen 937 ENRYIACQGPLPHTCTDFWQMVWEQGSTLIVMLTTEVEGGRVKCHQYWPRLGHETMEYGRFQVTCVFEQQTTCYVTREMT 1016 (1144)
T ss_pred eEEEEEecCCCcchHHHHHHHHHhcCceEEEEEeehhhcCeeccccccCCCCccceeccceEEEEEEecccccEEEEeEE
Confidence 34566 6667776777776656899999999988662 2443220 00 00001
Q ss_pred -------HhcCceEEEe-eCCCCCCCchhhhHHHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHH----HHHH-HCCC
Q 022901 156 -------QVLGIRHMRR-PAADFDPDSLRSQLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIA----YMFW-FCGM 222 (290)
Q Consensus 156 -------~~~gI~~l~i-Pi~D~~~~~l~~~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvvia----YLm~-~~g~ 222 (290)
++..|-|+++ -|+|++.|+-...|-+.++.|.........||+|||.+|+||||+++++ ||+. ...+
T Consensus 1017 l~~~~t~eeR~V~hLQYtaWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~v 1096 (1144)
T KOG0792|consen 1017 LKDLQTREERTVWHLQYTAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPV 1096 (1144)
T ss_pred EeeccCCceeeeeeeeecccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCC
Confidence 1223444443 6789888866667766666666555442249999999999999997754 3332 2366
Q ss_pred CHHHHHHHHHhhCCC-CCCHH---HHHHHHHHHh
Q 022901 223 KLDAAYDMLTSKRPC-GPNKT---AIRGATYDLA 252 (290)
Q Consensus 223 s~~eA~~~v~~~Rp~-~Pn~~---f~~ql~~~l~ 252 (290)
.+-+.+..+|.+|-. .++.. |+-+......
T Consensus 1097 di~divr~mR~QR~~mVQT~~QYkFVyevil~~l 1130 (1144)
T KOG0792|consen 1097 DILDIVRTMRDQRAMMVQTLSQYKFVYEVILRVL 1130 (1144)
T ss_pred CHHHHHHHHHHHHhhhccchHHhhHHHHHHHHHH
Confidence 788899999999986 55553 4444444333
No 39
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.88 E-value=0.00043 Score=67.72 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=89.4
Q ss_pred eecCCeEEccCCCCc----ccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCC--chh
Q 022901 103 QITDNLIVGSQPQKP----EDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPD--SLR 176 (290)
Q Consensus 103 ~I~~~LylGs~p~~~----~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~--~l~ 176 (290)
.++.+||+|.....- .....+ ...+..||++.+...... .......++++|+...-.. ++.
T Consensus 291 ~~~~~i~ig~~~~~l~~~~~~~~~~--~~~~~~vI~~s~~~~~~~-----------~~~~~~~~L~l~i~~~K~gs~~LR 357 (451)
T PF04179_consen 291 PGTTGIYIGKISSNLAISKAQLPDL--ESEFDCVINCSESPTPKE-----------SWPKSPKYLHLPIPSSKKGSRDLR 357 (451)
T ss_pred cCCCCeEEeccCCccccchhhcccc--CCCcCEEEEcCCCccccc-----------ccCCCceEEeCcCCCCcccHHHHH
Confidence 346799999887411 011122 257789999987643210 0124567899999875543 788
Q ss_pred hhHHHHHHHHHHHHhc-CCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHh
Q 022901 177 SQLPKAVSLLEWAISE-GKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLTSKRPCGPNKTAIRGATYDLA 252 (290)
Q Consensus 177 ~~l~~av~~I~~~l~~-~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~~~Rp~~Pn~~f~~ql~~~l~ 252 (290)
..|++++.|+...+.+ .+.+|+|+|..|++.|++|++|.|.++.+.+-. +.....+...++..+++-+..+.
T Consensus 358 ~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~----~~~~~~~~~itK~~IR~rL~~I~ 430 (451)
T PF04179_consen 358 KALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGN----FRDSFERPSITKDDIRQRLAWII 430 (451)
T ss_pred HHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccC----cccccccCCCCHHHHHHHHHHHH
Confidence 8999999999999988 226999999999999999999999887754322 11112223456666666555444
No 40
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=97.72 E-value=3.2e-05 Score=74.06 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=50.1
Q ss_pred eEEEeeCCCCCCCchhhhHHHHHHHHHH---HHhcCCceEEEEcCCCCChHHHHHHH-HHH---HHC----CCCHHHHHH
Q 022901 161 RHMRRPAADFDPDSLRSQLPKAVSLLEW---AISEGKGKVYVHCTAGLGRAPAVAIA-YMF---WFC----GMKLDAAYD 229 (290)
Q Consensus 161 ~~l~iPi~D~~~~~l~~~l~~av~~I~~---~l~~~~~~VLVHC~aG~~RS~tvvia-YLm---~~~----g~s~~eA~~ 229 (290)
.|+..-++|++.|.-.--+..+++.++. .+... |||.|||.||+||+||+++. .|+ ... .++....+.
T Consensus 416 ~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~A-gpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIq 494 (600)
T KOG0790|consen 416 HYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDA-GPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQ 494 (600)
T ss_pred hhheeecccCCCcCCccHHHHHHHHhhhhhcccccc-CcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHH
Confidence 4555677888776332222122222222 22223 59999999999999995433 333 233 457888999
Q ss_pred HHHhhCCCCCCHHH
Q 022901 230 MLTSKRPCGPNKTA 243 (290)
Q Consensus 230 ~v~~~Rp~~Pn~~f 243 (290)
+|++.|..-.....
T Consensus 495 mVRsqRSGmVQTEa 508 (600)
T KOG0790|consen 495 MVRSQRSGMVQTEA 508 (600)
T ss_pred HHHHHhcchhhhHH
Confidence 99999987433333
No 41
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.72 E-value=6e-05 Score=67.96 Aligned_cols=53 Identities=23% Similarity=0.425 Sum_probs=36.5
Q ss_pred ceEEEe-eCCCCCCCchhhhHHHHHHHHHHHHhc--CCceEEEEcCCCCChHHHHHHHHH
Q 022901 160 IRHMRR-PAADFDPDSLRSQLPKAVSLLEWAISE--GKGKVYVHCTAGLGRAPAVAIAYM 216 (290)
Q Consensus 160 I~~l~i-Pi~D~~~~~l~~~l~~av~~I~~~l~~--~~~~VLVHC~aG~~RS~tvviaYL 216 (290)
|.|+++ .+.|...+++ ...+++++-.... +.+|++|||.||.|||||+++.--
T Consensus 185 Ihhf~y~nW~D~~~p~i----~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ 240 (302)
T COG5599 185 IHHFQYINWVDFNVPDI----RSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDI 240 (302)
T ss_pred EEEEEecCccccCCcCH----HHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHH
Confidence 555555 4678777744 3445666655533 347999999999999999666553
No 42
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=97.44 E-value=0.00029 Score=66.22 Aligned_cols=95 Identities=17% Similarity=0.232 Sum_probs=60.4
Q ss_pred eEEEeeCCCCCCCchhhhHHHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHH-HHHHCC-CCHHHHHHHH---HhhC
Q 022901 161 RHMRRPAADFDPDSLRSQLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAY-MFWFCG-MKLDAAYDML---TSKR 235 (290)
Q Consensus 161 ~~l~iPi~D~~~~~l~~~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaY-Lm~~~g-~s~~eA~~~v---~~~R 235 (290)
.++..-++|++.+.....+-+.+..+...+....++++|||.+|+|||||+++.- |++..+ -...+.+..| |..|
T Consensus 254 ~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R 333 (374)
T KOG0791|consen 254 HFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSAR 333 (374)
T ss_pred EEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhcc
Confidence 3455678899888555556666777777777766899999999999999977665 333333 2355554444 4555
Q ss_pred CC-CCCH---HHHHHHHHHHhhcC
Q 022901 236 PC-GPNK---TAIRGATYDLAKDD 255 (290)
Q Consensus 236 p~-~Pn~---~f~~ql~~~l~~~~ 255 (290)
+. .++. -|+.|-..+...+.
T Consensus 334 ~~mVqte~Qyvfl~~c~~~~l~~~ 357 (374)
T KOG0791|consen 334 MLMVQTEDQYVFLHQCVLESLQGK 357 (374)
T ss_pred ccccchHHHHHHHHHHHHHHHhCC
Confidence 54 4443 34555444555443
No 43
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.23 E-value=0.0014 Score=63.03 Aligned_cols=89 Identities=20% Similarity=0.191 Sum_probs=52.0
Q ss_pred EEEeeCCCCCCCchhhhHHHHHHHHHH---HHhcCCceEEEEcCCCCChHHHHHHHH-HHHH--C---CCCHHHHHHHHH
Q 022901 162 HMRRPAADFDPDSLRSQLPKAVSLLEW---AISEGKGKVYVHCTAGLGRAPAVAIAY-MFWF--C---GMKLDAAYDMLT 232 (290)
Q Consensus 162 ~l~iPi~D~~~~~l~~~l~~av~~I~~---~l~~~~~~VLVHC~aG~~RS~tvviaY-Lm~~--~---g~s~~eA~~~v~ 232 (290)
|+...++|...++... .++.++.. ......+|+.|||.+|+||||++++.- .+.. . ..+..+.+..++
T Consensus 267 ~~~~~WPd~~~p~~~~---~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR 343 (415)
T KOG0789|consen 267 YHYINWPDHGAPDSVK---SILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIR 343 (415)
T ss_pred EeeCCCccccCCcchH---HHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 3444556765554322 33444431 222223699999999999999988644 2222 2 234888888899
Q ss_pred hhCCC-CCC---HHHHHHHHHHHhh
Q 022901 233 SKRPC-GPN---KTAIRGATYDLAK 253 (290)
Q Consensus 233 ~~Rp~-~Pn---~~f~~ql~~~l~~ 253 (290)
..|+. ..+ -.|+...+..+++
T Consensus 344 ~qR~~~vqt~~Qy~f~~~~~~~~~~ 368 (415)
T KOG0789|consen 344 YQRPGAVQSPLQYLFIYAATLKYIK 368 (415)
T ss_pred HHhhhcccchhHHHHHHHHHHHHHH
Confidence 99885 222 2345555544433
No 44
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.79 E-value=0.003 Score=63.71 Aligned_cols=139 Identities=18% Similarity=0.208 Sum_probs=86.5
Q ss_pred CCceeecCC-----eEEccCCCCcc---cHHHHHhhCCccEEEEcCCCCCcc------ccCCC-----------c--hh-
Q 022901 99 MNYTQITDN-----LIVGSQPQKPE---DIDHLKQEERVAYILNLQQDKDIE------YWGID-----------L--KP- 150 (290)
Q Consensus 99 ~~~~~I~~~-----LylGs~p~~~~---d~~~L~~~~gI~~VvnL~~~~e~~------~~g~~-----------~--~~- 150 (290)
+|.+.|.|+ .||..+--.+. ++-...=+.|+..||+|+...|.. ||.-. . +.
T Consensus 790 iNAS~I~DhDPR~paYIAtQgPl~stiA~FWQmvWe~G~~vIV~Lt~l~Engv~qc~rYWPdeGselyhiyEV~LVSEHI 869 (1004)
T KOG0793|consen 790 INASPIMDHDPRNPAYIATQGPLPSTIADFWQMVWESGCVVIVMLTPLAENGVRQCYRYWPDEGSELYHIYEVNLVSEHI 869 (1004)
T ss_pred ccccccccCCCCccceeeccCCCchHHHHHHHHHHHcCcEEEEEecChhhcchhhhhhcCCCCCcceeeeEEeeeehhhh
Confidence 455666654 67755432222 333233248999999999865442 44211 0 00
Q ss_pred ------HHHHHHh-------cCc-eEEEeeCCCCCCCchhhhHHHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHH
Q 022901 151 ------IVERCQV-------LGI-RHMRRPAADFDPDSLRSQLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYM 216 (290)
Q Consensus 151 ------i~~~~~~-------~gI-~~l~iPi~D~~~~~l~~~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYL 216 (290)
...+|-+ ..+ .++.+.+.+.+.|.....+-++-.-++++.+-...+|+|||..|-||||+-++.=|
T Consensus 870 WceDfLVRSFYLKNlqtseTRTvTQFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDm 949 (1004)
T KOG0793|consen 870 WCEDFLVRSFYLKNLQTSETRTVTQFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDM 949 (1004)
T ss_pred hhhhHHHHHHHHhhcccccceeeeeeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHH
Confidence 1122222 112 35667888888887766666666777777653335999999999999999554443
Q ss_pred HHH---C---CCCHHHHHHHHHhhCCC
Q 022901 217 FWF---C---GMKLDAAYDMLTSKRPC 237 (290)
Q Consensus 217 m~~---~---g~s~~eA~~~v~~~Rp~ 237 (290)
+.. . ..+....++++|.+|+.
T Consensus 950 vl~Rm~kGakeIDIaATlEHlRDQR~G 976 (1004)
T KOG0793|consen 950 VLNRMAKGAKEIDIAATLEHLRDQRPG 976 (1004)
T ss_pred HHHHHhccchhhhHHHHHHHHhhcCCc
Confidence 321 1 44778889999999997
No 45
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=96.10 E-value=0.014 Score=48.41 Aligned_cols=68 Identities=32% Similarity=0.360 Sum_probs=43.6
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHhcC--CceEEEEcCCCCCh----HHHHHHHHHHHHCCCCHHHHHHHHHhhC
Q 022901 167 AADFDPDSLRSQLPKAVSLLEWAISEG--KGKVYVHCTAGLGR----APAVAIAYMFWFCGMKLDAAYDMLTSKR 235 (290)
Q Consensus 167 i~D~~~~~l~~~l~~av~~I~~~l~~~--~~~VLVHC~aG~~R----S~tvviaYLm~~~g~s~~eA~~~v~~~R 235 (290)
..|+++-++ ..+-..+..+++.++.. .++.+|||++.-.+ ++.++.||+|.+.||++++|++.+...-
T Consensus 38 ~~DFGPlnL-~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~ 111 (141)
T PF14671_consen 38 YADFGPLNL-AQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQ 111 (141)
T ss_dssp SS------H-HHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT
T ss_pred cCcCCCccH-HHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcC
Confidence 478888887 45667778888888762 25788998775443 4668999999999999999999998775
No 46
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.61 E-value=0.0066 Score=64.21 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=30.7
Q ss_pred eCCCCCCCchhhhHHHHHHHHHHHHhcC---CceEEEEcCCCCChHHHHH
Q 022901 166 PAADFDPDSLRSQLPKAVSLLEWAISEG---KGKVYVHCTAGLGRAPAVA 212 (290)
Q Consensus 166 Pi~D~~~~~l~~~l~~av~~I~~~l~~~---~~~VLVHC~aG~~RS~tvv 212 (290)
-++|+..|... ...+.|+.+...-. .||++|||.+|.||||+.+
T Consensus 702 ~Wpd~gvPe~~---t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi 748 (1087)
T KOG4228|consen 702 AWPDHGVPETP---TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFI 748 (1087)
T ss_pred cCCCCCCcccc---hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEE
Confidence 47788777432 23356666554432 2799999999999999954
No 47
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=93.89 E-value=0.13 Score=54.91 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=39.0
Q ss_pred CceEEEEcCCCCChHHHHHHHHHHH-HC----CCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHh
Q 022901 194 KGKVYVHCTAGLGRAPAVAIAYMFW-FC----GMKLDAAYDMLTSKRPCGPNKTAIRGATYDLA 252 (290)
Q Consensus 194 ~~~VLVHC~aG~~RS~tvviaYLm~-~~----g~s~~eA~~~v~~~Rp~~Pn~~f~~ql~~~l~ 252 (290)
.+|+.|||..|.|||++++++-++. .. -++.=.+.+-++..||...+.--+-++.++.+
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t~~QY~fcYdv~ 1081 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVDTSDQYQFCYDVA 1081 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccCcHHHHHHHHHHH
Confidence 4799999999999999966555432 22 23556677788888877444434444444443
No 48
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.93 E-value=0.19 Score=50.33 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCceEEEEcCCCCChHHHHHH-HHHH
Q 022901 184 SLLEWAISEGKGKVYVHCTAGLGRAPAVAI-AYMF 217 (290)
Q Consensus 184 ~~I~~~l~~~~~~VLVHC~aG~~RS~tvvi-aYLm 217 (290)
-.|...++.++.+|||||..|.+||+-++. |.||
T Consensus 364 ~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~Ll 398 (717)
T KOG4471|consen 364 VRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLL 398 (717)
T ss_pred HHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHH
Confidence 334444555557999999999999988554 4343
No 49
>PLN02160 thiosulfate sulfurtransferase
Probab=92.64 E-value=0.45 Score=38.94 Aligned_cols=87 Identities=15% Similarity=0.232 Sum_probs=42.7
Q ss_pred ccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCC-chhhhHHHHHHHHHHHHhcCCce
Q 022901 118 EDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPD-SLRSQLPKAVSLLEWAISEGKGK 196 (290)
Q Consensus 118 ~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~-~l~~~l~~av~~I~~~l~~~~~~ 196 (290)
.++..+.+ .+ ..|||+++..+... |.- .|-.++++|..+.... .+.. ......+...+..+ .+
T Consensus 20 ~e~~~~~~-~~-~~lIDVR~~~E~~~-ghI----------pgA~~iniP~~~~~~~~~l~~--~~~~~~~~~~~~~~-~~ 83 (136)
T PLN02160 20 SQAKTLLQ-SG-HQYLDVRTQDEFRR-GHC----------EAAKIVNIPYMLNTPQGRVKN--QEFLEQVSSLLNPA-DD 83 (136)
T ss_pred HHHHHHHh-CC-CEEEECCCHHHHhc-CCC----------CCcceecccchhcCcccccCC--HHHHHHHHhccCCC-Cc
Confidence 44555544 45 36899998754221 100 1112456776433211 1110 11112222223344 58
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 197 VYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 197 VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
|+|||..| .||.. ++..| ...|.+
T Consensus 84 IivyC~sG-~RS~~-Aa~~L-~~~G~~ 107 (136)
T PLN02160 84 ILVGCQSG-ARSLK-ATTEL-VAAGYK 107 (136)
T ss_pred EEEECCCc-HHHHH-HHHHH-HHcCCC
Confidence 99999999 79965 33334 456664
No 50
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=91.26 E-value=1 Score=34.17 Aligned_cols=26 Identities=42% Similarity=0.529 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+|+|..| .||.. ++.+| ...|.+
T Consensus 62 ~~ivvyC~~G-~rs~~-a~~~L-~~~G~~ 87 (101)
T cd01518 62 KKVLMYCTGG-IRCEK-ASAYL-KERGFK 87 (101)
T ss_pred CEEEEECCCc-hhHHH-HHHHH-HHhCCc
Confidence 5899999999 79965 44455 456664
No 51
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=88.90 E-value=3.2 Score=33.07 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=39.4
Q ss_pred HHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCC
Q 022901 120 IDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADF 170 (290)
Q Consensus 120 ~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~ 170 (290)
++.|+. .||+.||+++.-......|.+-+.+.....+.||.|+++|-...
T Consensus 6 ~~~l~~-~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~Lg~ 55 (122)
T PF04343_consen 6 YDLLKK-NGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPELGP 55 (122)
T ss_pred HHHHHH-CCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhhcC
Confidence 345666 99999999887655446677878888888899999999988543
No 52
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=88.28 E-value=0.69 Score=46.47 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCCceEEEEcCCCCChHHHHH
Q 022901 180 PKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVA 212 (290)
Q Consensus 180 ~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvv 212 (290)
-++..+|.+++..++.+|||||..|.+||..|+
T Consensus 330 L~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~ 362 (573)
T KOG1089|consen 330 LKAAAEIAKCLSSEGASVLVHCSDGWDRTCQVS 362 (573)
T ss_pred HHHHHHHHHHHHhCCCeEEEEccCCcchhHHHH
Confidence 345567777887665799999999999996644
No 53
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=87.83 E-value=1.3 Score=42.29 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCceEEEEcCCCCChHHHHHH
Q 022901 181 KAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAI 213 (290)
Q Consensus 181 ~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvvi 213 (290)
.+...|.+.+...+..|||||..|.+||+-++.
T Consensus 218 ~~a~~i~~~l~~~~~~Vlvh~~dGwDrt~q~~s 250 (353)
T PF06602_consen 218 SGASRIADLLHDEGSSVLVHCSDGWDRTSQLSS 250 (353)
T ss_dssp HHHHHHHHHHHTT--EEEEECTTSSSHHHHHHH
T ss_pred HHHHHHHHHhhccCceEEEEcCCCCcccHHHHH
Confidence 334445555544446999999999999966543
No 54
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=87.18 E-value=2 Score=32.60 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=40.7
Q ss_pred CCccEEEEcCCCCCccccCCCchhHHHHHHhcCce-EEEeeCCCCCCCchhhhHHHHHHHHHHHHhcCCceEEEEcCCCC
Q 022901 127 ERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIR-HMRRPAADFDPDSLRSQLPKAVSLLEWAISEGKGKVYVHCTAGL 205 (290)
Q Consensus 127 ~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~-~l~iPi~D~~~~~l~~~l~~av~~I~~~l~~~~~~VLVHC~aG~ 205 (290)
.+=..||+++++.+.... +-.. ..++|+.+...... ... +... .+++|+|..|
T Consensus 18 ~~~~~liDvR~~~e~~~~-------------~i~~~~~~ip~~~~~~~~~--~~~---------~~~~-~~ivv~C~~G- 71 (110)
T COG0607 18 GEDAVLLDVREPEEYERG-------------HIPGAAINIPLSELKAAEN--LLE---------LPDD-DPIVVYCASG- 71 (110)
T ss_pred cCCCEEEeccChhHhhhc-------------CCCcceeeeecccchhhhc--ccc---------cCCC-CeEEEEeCCC-
Confidence 456789999987432221 2233 67777776533211 000 3333 6999999999
Q ss_pred ChHHHHHHHHHHHHCCCC
Q 022901 206 GRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 206 ~RS~tvviaYLm~~~g~s 223 (290)
.||.. ++.+|. ..|.+
T Consensus 72 ~rS~~-aa~~L~-~~G~~ 87 (110)
T COG0607 72 VRSAA-AAAALK-LAGFT 87 (110)
T ss_pred CChHH-HHHHHH-HcCCc
Confidence 69944 777775 45543
No 55
>PRK01415 hypothetical protein; Validated
Probab=85.20 E-value=2.2 Score=38.72 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+++|++| .|| ..++++|. ..|.+
T Consensus 172 k~Iv~yCtgG-iRs-~kAa~~L~-~~Gf~ 197 (247)
T PRK01415 172 KKIAMVCTGG-IRC-EKSTSLLK-SIGYD 197 (247)
T ss_pred CeEEEECCCC-hHH-HHHHHHHH-HcCCC
Confidence 5899999999 598 55777775 56664
No 56
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=81.84 E-value=3.9 Score=37.10 Aligned_cols=91 Identities=20% Similarity=0.357 Sum_probs=58.2
Q ss_pred CeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCC-----CCchhhhHHH
Q 022901 107 NLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFD-----PDSLRSQLPK 181 (290)
Q Consensus 107 ~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~-----~~~l~~~l~~ 181 (290)
.+.+|.... ..++..+-++++|+.|||.++++-... .+...+.|++.||.|+++-=+.-. .-.....+.+
T Consensus 46 ~v~~G~lg~-~~~l~~~l~~~~i~~vIDATHPfA~~i----s~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~e 120 (249)
T PF02571_consen 46 EVRVGRLGD-EEGLAEFLRENGIDAVIDATHPFAAEI----SQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEE 120 (249)
T ss_pred eEEECCCCC-HHHHHHHHHhCCCcEEEECCCchHHHH----HHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHH
Confidence 478888853 556655544599999999999864332 245668999999999988433221 1223345666
Q ss_pred HHHHHHHHHhcCCceEEEEcCCCCChH
Q 022901 182 AVSLLEWAISEGKGKVYVHCTAGLGRA 208 (290)
Q Consensus 182 av~~I~~~l~~~~~~VLVHC~aG~~RS 208 (290)
|++.+.+. +.++||. +.| +++
T Consensus 121 A~~~l~~~---~~~~ifl--ttG-sk~ 141 (249)
T PF02571_consen 121 AAELLKEL---GGGRIFL--TTG-SKN 141 (249)
T ss_pred HHHHHhhc---CCCCEEE--eCc-hhh
Confidence 66666432 3257887 677 344
No 57
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=81.16 E-value=12 Score=28.12 Aligned_cols=81 Identities=16% Similarity=0.292 Sum_probs=41.1
Q ss_pred CCccEEEEcCCCCCccccCCCchhHHHHHHhcCc-eEEEeeCCCC---CCCchhhhHHHHHHHHHHHHhcCCceEEEEcC
Q 022901 127 ERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGI-RHMRRPAADF---DPDSLRSQLPKAVSLLEWAISEGKGKVYVHCT 202 (290)
Q Consensus 127 ~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI-~~l~iPi~D~---~~~~l~~~l~~av~~I~~~l~~~~~~VLVHC~ 202 (290)
.+=..|||++...+ +..-.| .-+++|+... ........+..........+... ..|+|+|.
T Consensus 11 ~~~~~liD~R~~~~--------------~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iv~yc~ 75 (113)
T PF00581_consen 11 NESVLLIDVRSPEE--------------YERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKD-KDIVFYCS 75 (113)
T ss_dssp TTTEEEEEESSHHH--------------HHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTT-SEEEEEES
T ss_pred CCCeEEEEeCCHHH--------------HHcCCCCCCcccccccccccccccccccccccccccccccccc-ccceeeee
Confidence 35567889986532 222222 2477777443 11222223333333333222333 48999998
Q ss_pred CCCChHHHHHHH---HHHHHCCCC
Q 022901 203 AGLGRAPAVAIA---YMFWFCGMK 223 (290)
Q Consensus 203 aG~~RS~tvvia---YLm~~~g~s 223 (290)
.| .|+...+.+ +.+...|++
T Consensus 76 ~~-~~~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 76 SG-WRSGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp SS-CHHHHHHHHHHHHHHHHTTTS
T ss_pred cc-cccchhHHHHHHHHHHHcCCC
Confidence 88 577665444 334455653
No 58
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=77.04 E-value=14 Score=29.00 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=17.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+|+|..| .||..+ +.+| ...|.+
T Consensus 65 ~~ivv~C~~G-~rs~~a-a~~L-~~~G~~ 90 (117)
T cd01522 65 RPVLLLCRSG-NRSIAA-AEAA-AQAGFT 90 (117)
T ss_pred CeEEEEcCCC-ccHHHH-HHHH-HHCCCC
Confidence 5899999999 588653 3334 455653
No 59
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=76.84 E-value=14 Score=29.48 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=18.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+|.|..|-.||.. +++++...|.+
T Consensus 87 ~~vvvyC~~~G~rs~~--a~~~L~~~G~~ 113 (128)
T cd01520 87 PKLLIYCARGGMRSQS--LAWLLESLGID 113 (128)
T ss_pred CeEEEEeCCCCccHHH--HHHHHHHcCCc
Confidence 5899999743268754 33666777764
No 60
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=76.80 E-value=11 Score=35.23 Aligned_cols=105 Identities=20% Similarity=0.281 Sum_probs=58.7
Q ss_pred ecCCeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCchhhhHHHHH
Q 022901 104 ITDNLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSLRSQLPKAV 183 (290)
Q Consensus 104 I~~~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l~~~l~~av 183 (290)
|.|.-.+|.+. .|.++..+..+.+ +-||+.+.+.|... | + +.+.-.|+. +.|.+.-
T Consensus 105 v~p~~~vG~yl-~p~~wn~~l~D~~-~vviDtRN~YE~~i---------------G--~----F~gAv~p~~-~tFrefP 160 (308)
T COG1054 105 VDPLENVGTYL-SPKDWNELLSDPD-VVVIDTRNDYEVAI---------------G--H----FEGAVEPDI-ETFREFP 160 (308)
T ss_pred cCccccccCcc-CHHHHHHHhcCCC-eEEEEcCcceeEee---------------e--e----ecCccCCCh-hhhhhhH
Confidence 66667777777 4778887776444 67788887765432 1 0 111111222 2333333
Q ss_pred HHHHHHHh--cCCceEEEEcCCCCChHHHHHHHHHHHHCCCCH-H----HHHHHHHhhCC
Q 022901 184 SLLEWAIS--EGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKL-D----AAYDMLTSKRP 236 (290)
Q Consensus 184 ~~I~~~l~--~~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~-~----eA~~~v~~~Rp 236 (290)
+++.+..+ .+ .+|...|++|+ |. =-+.+||. ..|+.- - =.+.+++....
T Consensus 161 ~~v~~~~~~~~~-KkVvmyCTGGI-RC-EKas~~m~-~~GF~eVyhL~GGIl~Y~e~~~~ 216 (308)
T COG1054 161 AWVEENLDLLKD-KKVVMYCTGGI-RC-EKASAWMK-ENGFKEVYHLEGGILKYLEDVGT 216 (308)
T ss_pred HHHHHHHHhccC-CcEEEEcCCce-ee-hhhHHHHH-HhcchhhhcccchHHHHhhhcCc
Confidence 44443333 23 48999999998 87 44677775 566531 1 14555555443
No 61
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=75.70 E-value=7.4 Score=29.85 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=17.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGM 222 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~ 222 (290)
.+|+|+|..|. ||.. ++..| ...|.
T Consensus 67 ~~ivv~C~~G~-rs~~-a~~~L-~~~G~ 91 (109)
T cd01533 67 TPIVVNCAGRT-RSII-GAQSL-INAGL 91 (109)
T ss_pred CeEEEECCCCc-hHHH-HHHHH-HHCCC
Confidence 58999999994 8843 44444 46676
No 62
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=75.43 E-value=9.6 Score=35.73 Aligned_cols=26 Identities=42% Similarity=0.511 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+|+|.+| .||. .++.||. ..|.+
T Consensus 172 k~IvvyC~~G-~Rs~-~aa~~L~-~~Gf~ 197 (314)
T PRK00142 172 KKVVMYCTGG-IRCE-KASAWMK-HEGFK 197 (314)
T ss_pred CeEEEECCCC-cHHH-HHHHHHH-HcCCC
Confidence 5999999999 5984 4677775 46663
No 63
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=74.43 E-value=9.2 Score=36.69 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=18.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGM 222 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~ 222 (290)
.+|+|||..| .||.. ++.+|. ..|.
T Consensus 333 ~~Ivv~C~sG-~RS~~-Aa~~L~-~~G~ 357 (370)
T PRK05600 333 DNVVVYCASG-IRSAD-FIEKYS-HLGH 357 (370)
T ss_pred CcEEEECCCC-hhHHH-HHHHHH-HcCC
Confidence 3899999999 69854 566664 4565
No 64
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=70.99 E-value=5.5 Score=36.86 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=15.7
Q ss_pred eEEEEcCCCCChHHHHHH
Q 022901 196 KVYVHCTAGLGRAPAVAI 213 (290)
Q Consensus 196 ~VLVHC~aG~~RS~tvvi 213 (290)
.|-|=|++|++||++++=
T Consensus 244 tIaiGCTGG~HRSV~iae 261 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAE 261 (284)
T ss_pred EEEEEcCCCcCcHHHHHH
Confidence 788999999999988663
No 65
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=70.80 E-value=11 Score=29.49 Aligned_cols=27 Identities=26% Similarity=0.206 Sum_probs=18.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+|+|..| ++.++.++.+| ...|++
T Consensus 80 ~~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 80 DTVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 5999999997 55555554444 466764
No 66
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=70.67 E-value=13 Score=33.76 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=55.1
Q ss_pred CeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCC-----CCCchhhhHHH
Q 022901 107 NLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADF-----DPDSLRSQLPK 181 (290)
Q Consensus 107 ~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~-----~~~~l~~~l~~ 181 (290)
.+..|..-. .+++..+-++++|+.|||.++++-... .....+.|++.+|.|+++-=+.. +.-.....+.+
T Consensus 45 ~v~~G~l~~-~~~l~~~l~~~~i~~VIDATHPfA~~i----s~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~ 119 (248)
T PRK08057 45 PVRVGGFGG-AEGLAAYLREEGIDLVIDATHPYAAQI----SANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEE 119 (248)
T ss_pred eEEECCCCC-HHHHHHHHHHCCCCEEEECCCccHHHH----HHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHH
Confidence 477788743 556665555599999999999864332 24566899999999999853321 11122345666
Q ss_pred HHHHHHHHHhcCCceEEEEcCCC
Q 022901 182 AVSLLEWAISEGKGKVYVHCTAG 204 (290)
Q Consensus 182 av~~I~~~l~~~~~~VLVHC~aG 204 (290)
+++.+.+. ++||. +.|
T Consensus 120 a~~~l~~~-----~~vll--ttG 135 (248)
T PRK08057 120 AAEALAPF-----RRVLL--TTG 135 (248)
T ss_pred HHHHhhcc-----CCEEE--ecC
Confidence 66665432 36776 666
No 67
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=66.04 E-value=8.5 Score=28.91 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=18.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+|+|..| .||.. ++..| ...|.+
T Consensus 62 ~~ivv~C~~G-~rs~~-aa~~L-~~~G~~ 87 (100)
T cd01523 62 QEVTVICAKE-GSSQF-VAELL-AERGYD 87 (100)
T ss_pred CeEEEEcCCC-CcHHH-HHHHH-HHcCce
Confidence 5899999999 58844 55555 356664
No 68
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=64.85 E-value=16 Score=26.38 Aligned_cols=26 Identities=35% Similarity=0.577 Sum_probs=16.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+|+|..| .|+.. + ++.+...|.+
T Consensus 57 ~~iv~~c~~g-~~a~~-~-~~~l~~~G~~ 82 (100)
T smart00450 57 KPVVVYCRSG-NRSAK-A-AWLLRELGFK 82 (100)
T ss_pred CeEEEEeCCC-cHHHH-H-HHHHHHcCCC
Confidence 5999999776 57633 3 3444456654
No 69
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=64.16 E-value=12 Score=34.57 Aligned_cols=37 Identities=38% Similarity=0.532 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHH----hcCCc--eEEEEcCCCCChHHHHHHH
Q 022901 178 QLPKAVSLLEWAI----SEGKG--KVYVHCTAGLGRAPAVAIA 214 (290)
Q Consensus 178 ~l~~av~~I~~~l----~~~~~--~VLVHC~aG~~RS~tvvia 214 (290)
.+..+.++++.++ ++|+. .|-|=|++|.+||.+++=.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e~ 265 (288)
T PRK05416 223 FLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAER 265 (288)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHHH
Confidence 4444444444433 33432 6889999999999887643
No 70
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=64.12 E-value=19 Score=26.70 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=18.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+|+|..| .||.. ++.+| ...|.+
T Consensus 57 ~~iv~~c~~G-~rs~~-aa~~L-~~~G~~ 82 (95)
T cd01534 57 ARIVLADDDG-VRADM-TASWL-AQMGWE 82 (95)
T ss_pred CeEEEECCCC-ChHHH-HHHHH-HHcCCE
Confidence 5899999999 58854 44445 566664
No 71
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=63.63 E-value=18 Score=26.92 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=16.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGM 222 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~ 222 (290)
.+|+|+|..| .||.. ++..|. ..|.
T Consensus 55 ~~iv~~c~~g-~~s~~-~~~~L~-~~g~ 79 (99)
T cd01527 55 NAIIFHCRSG-MRTQQ-NAERLA-AISA 79 (99)
T ss_pred CcEEEEeCCC-chHHH-HHHHHH-HcCC
Confidence 5899999999 57644 444443 3444
No 72
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=61.98 E-value=14 Score=33.93 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=15.3
Q ss_pred eEEEEcCCCCChHHHHH
Q 022901 196 KVYVHCTAGLGRAPAVA 212 (290)
Q Consensus 196 ~VLVHC~aG~~RS~tvv 212 (290)
.|-|=|++|.+||.+++
T Consensus 245 TIaIGCTGGqHRSV~ia 261 (286)
T COG1660 245 TIAIGCTGGQHRSVYIA 261 (286)
T ss_pred EEEEccCCCccchHHHH
Confidence 68899999999999876
No 73
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=59.25 E-value=25 Score=32.00 Aligned_cols=87 Identities=18% Similarity=0.261 Sum_probs=51.2
Q ss_pred eEEccCCCCcccH-HHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEee---CCCCCCCchhhhHHHHH
Q 022901 108 LIVGSQPQKPEDI-DHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRP---AADFDPDSLRSQLPKAV 183 (290)
Q Consensus 108 LylGs~p~~~~d~-~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iP---i~D~~~~~l~~~l~~av 183 (290)
+..|..- ..++ +.+.+ .+|+.|||...++-... .....+.|++.||.|+++- +.+.+.-.....+.+++
T Consensus 47 v~~g~l~--~~~l~~~l~~-~~i~~VIDAtHPfA~~i----s~~a~~a~~~~~ipylR~eR~~~~~~~~~~~v~~~~ea~ 119 (256)
T TIGR00715 47 VHTGALD--PQELREFLKR-HSIDILVDATHPFAAQI----TTNATAVCKELGIPYVRFERPPLALGKNIIEVPDIEEAT 119 (256)
T ss_pred EEECCCC--HHHHHHHHHh-cCCCEEEEcCCHHHHHH----HHHHHHHHHHhCCcEEEEECCCCCCCCCeEEeCCHHHHH
Confidence 5555543 4456 45554 89999999999754321 2445688999999999993 21222222334566666
Q ss_pred HHHHHHHhcCCceEEEEcCCC
Q 022901 184 SLLEWAISEGKGKVYVHCTAG 204 (290)
Q Consensus 184 ~~I~~~l~~~~~~VLVHC~aG 204 (290)
+.+......+ ++||. +.|
T Consensus 120 ~~~~~~~~~~-~~i~l--ttG 137 (256)
T TIGR00715 120 RVAYQPYLRG-KRVFL--TAG 137 (256)
T ss_pred HHhhhccccC-CcEEE--ecC
Confidence 5443210022 46777 666
No 74
>smart00400 ZnF_CHCC zinc finger.
Probab=54.93 E-value=12 Score=25.34 Aligned_cols=32 Identities=19% Similarity=0.439 Sum_probs=24.6
Q ss_pred EEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHH
Q 022901 198 YVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDML 231 (290)
Q Consensus 198 LVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v 231 (290)
..||.+. |..|- ++.++++..|++..+|++.+
T Consensus 23 ~~~Cf~c-g~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFGC-GAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeCC-CCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 4778753 55565 57778889999999999876
No 75
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=54.74 E-value=33 Score=26.38 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=17.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGM 222 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~ 222 (290)
.+|+|+|..| .||.. ++..|. ..|.
T Consensus 59 ~~vvlyC~~G-~rS~~-aa~~L~-~~G~ 83 (101)
T TIGR02981 59 DTVKLYCNAG-RQSGM-AKDILL-DMGY 83 (101)
T ss_pred CeEEEEeCCC-HHHHH-HHHHHH-HcCC
Confidence 5899999999 58755 444443 4555
No 76
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=54.52 E-value=21 Score=26.46 Aligned_cols=28 Identities=21% Similarity=0.107 Sum_probs=16.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+|+|..| .|+.+.-++..+...|.+
T Consensus 51 ~~ivl~c~~G-~~~~s~~aa~~L~~~G~~ 78 (92)
T cd01532 51 TPIVVYGEGG-GEDLAPRAARRLSELGYT 78 (92)
T ss_pred CeEEEEeCCC-CchHHHHHHHHHHHcCcc
Confidence 5899999999 454332333344455543
No 77
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=53.34 E-value=22 Score=24.24 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhh
Q 022901 209 PAVAIAYMFWFCGMKLDAAYDMLTSK 234 (290)
Q Consensus 209 ~tvviaYLm~~~g~s~~eA~~~v~~~ 234 (290)
..-+.+.||...|++.++|+++++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 34577889999999999999999875
No 78
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=51.62 E-value=16 Score=28.93 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=15.9
Q ss_pred ceEEEEcC-CCCChHHHHHHHHHHH
Q 022901 195 GKVYVHCT-AGLGRAPAVAIAYMFW 218 (290)
Q Consensus 195 ~~VLVHC~-aG~~RS~tvviaYLm~ 218 (290)
.+|+|||. +| .||+. ++.+|..
T Consensus 69 ~~vv~yC~~sg-~rs~~-aa~~L~~ 91 (121)
T cd01530 69 RVLIFHCEFSS-KRGPR-MARHLRN 91 (121)
T ss_pred CEEEEECCCcc-ccHHH-HHHHHHH
Confidence 58999997 77 68855 5555653
No 79
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=50.47 E-value=13 Score=28.45 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=26.3
Q ss_pred EEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHhhCC
Q 022901 198 YVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLTSKRP 236 (290)
Q Consensus 198 LVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~~~Rp 236 (290)
..||.+. |..|- ++.++|.+.+++..+|++.+.+.-.
T Consensus 54 ~~~Cf~C-g~~Gd-~i~~v~~~~~~~f~eAv~~l~~~~~ 90 (97)
T PF01807_consen 54 RFKCFGC-GKGGD-VIDFVMKYEGCSFKEAVKWLAEEFG 90 (97)
T ss_dssp EEEETTT---EE--HHHHHHHHHT--HHHHHHHHHHHHT
T ss_pred eEEECCC-CCCCc-HHhHHHHHhCCCHHHHHHHHHHHhC
Confidence 6889865 67766 6888899999999999999987643
No 80
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=48.67 E-value=29 Score=28.49 Aligned_cols=76 Identities=12% Similarity=0.160 Sum_probs=38.9
Q ss_pred cHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCchhhhHHHHHHHHHHHHhcCCceEE
Q 022901 119 DIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSLRSQLPKAVSLLEWAISEGKGKVY 198 (290)
Q Consensus 119 d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l~~~l~~av~~I~~~l~~~~~~VL 198 (290)
++..|.+ .+=...||++++.|...-+. -.-++||..-....-... =+.+...+..........++
T Consensus 29 qvk~L~~-~~~~~llDVRepeEfk~gh~-------------~~siNiPy~~~~~~~~l~-~~eF~kqvg~~kp~~d~eiI 93 (136)
T KOG1530|consen 29 QVKNLLQ-HPDVVLLDVREPEEFKQGHI-------------PASINIPYMSRPGAGALK-NPEFLKQVGSSKPPHDKEII 93 (136)
T ss_pred HHHHHhc-CCCEEEEeecCHHHhhccCC-------------cceEeccccccccccccC-CHHHHHHhcccCCCCCCcEE
Confidence 4455555 56567788888755322111 234667764333221111 11222333222222323799
Q ss_pred EEcCCCCChHHH
Q 022901 199 VHCTAGLGRAPA 210 (290)
Q Consensus 199 VHC~aG~~RS~t 210 (290)
|+|+.| .||..
T Consensus 94 f~C~SG-~Rs~~ 104 (136)
T KOG1530|consen 94 FGCASG-VRSLK 104 (136)
T ss_pred EEeccC-cchhH
Confidence 999999 59855
No 81
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=46.90 E-value=30 Score=25.91 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=17.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+|+|..| .||.. + +.++...|.+
T Consensus 67 ~~ivv~c~~g-~~s~~-~-~~~l~~~G~~ 92 (106)
T cd01519 67 KELIFYCKAG-VRSKA-A-AELARSLGYE 92 (106)
T ss_pred CeEEEECCCc-HHHHH-H-HHHHHHcCCc
Confidence 5899999999 47743 3 3444566763
No 82
>PRK05320 rhodanese superfamily protein; Provisional
Probab=44.93 E-value=44 Score=30.34 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+++|+.| .||. .++.+|. ..|.+
T Consensus 176 k~IvvyC~~G-~Rs~-~Aa~~L~-~~Gf~ 201 (257)
T PRK05320 176 KTVVSFCTGG-IRCE-KAAIHMQ-EVGID 201 (257)
T ss_pred CeEEEECCCC-HHHH-HHHHHHH-HcCCc
Confidence 5899999999 5884 4777775 56653
No 83
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=44.42 E-value=86 Score=29.32 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHH-HHHHHhhCCCCCCHHHHHHHH
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAA-YDMLTSKRPCGPNKTAIRGAT 248 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA-~~~v~~~Rp~~Pn~~f~~ql~ 248 (290)
-||.+||..|. |.+.-++.+|. ..|.+++.. +-++- ..++.++++.+.
T Consensus 156 ~pI~~H~~~g~-~~~~e~~~il~-e~Gv~~~rvvigH~D----~~~D~~y~~~la 204 (308)
T PF02126_consen 156 APISTHTGRGT-RMGLEQLDILE-EEGVDPSRVVIGHMD----RNPDLDYHRELA 204 (308)
T ss_dssp -EEEEEESTTG-TCHHHHHHHHH-HTT--GGGEEETSGG----GST-HHHHHHHH
T ss_pred CeEEEcCCCCC-cCHHHHHHHHH-HcCCChhHeEEeCCC----CCCCHHHHHHHH
Confidence 69999998884 45666666664 788888742 22222 267777776655
No 84
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=44.32 E-value=42 Score=26.00 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=16.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGM 222 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~ 222 (290)
.+|+|+|..| .||... +..|. ..|.
T Consensus 61 ~~IVlyC~~G-~rS~~a-a~~L~-~~G~ 85 (104)
T PRK10287 61 DTVKLYCNAG-RQSGQA-KEILS-EMGY 85 (104)
T ss_pred CeEEEEeCCC-hHHHHH-HHHHH-HcCC
Confidence 5899999998 577554 44443 4555
No 85
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=44.31 E-value=46 Score=24.88 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=18.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+|+|..| .||.. ++.+|. ..|.+
T Consensus 59 ~~vv~~c~~g-~rs~~-~~~~l~-~~G~~ 84 (101)
T cd01528 59 KDIVVLCHHG-GRSMQ-VAQWLL-RQGFE 84 (101)
T ss_pred CeEEEEeCCC-chHHH-HHHHHH-HcCCc
Confidence 5899999999 68844 444554 46654
No 86
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=43.33 E-value=30 Score=25.66 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=18.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+|+|..| +||.. ++.+| ...|.+
T Consensus 57 ~~ivv~c~~g-~~s~~-~~~~l-~~~G~~ 82 (96)
T cd01529 57 TRYVLTCDGS-LLARF-AAQEL-LALGGK 82 (96)
T ss_pred CCEEEEeCCh-HHHHH-HHHHH-HHcCCC
Confidence 5899999988 68855 44555 456653
No 87
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=42.86 E-value=12 Score=28.84 Aligned_cols=10 Identities=40% Similarity=1.328 Sum_probs=8.7
Q ss_pred ceEEEEcCCC
Q 022901 195 GKVYVHCTAG 204 (290)
Q Consensus 195 ~~VLVHC~aG 204 (290)
.+|||||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 4899999877
No 88
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=42.85 E-value=53 Score=27.48 Aligned_cols=27 Identities=15% Similarity=-0.037 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+|.|..|..||.. +++++...|.+
T Consensus 117 ~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 117 RPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 5999999998667754 34444566654
No 89
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=42.41 E-value=30 Score=31.60 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=21.8
Q ss_pred CCCCChHHHHHHHHHHHHCCCCHHHHHHH
Q 022901 202 TAGLGRAPAVAIAYMFWFCGMKLDAAYDM 230 (290)
Q Consensus 202 ~aG~~RS~tvviaYLm~~~g~s~~eA~~~ 230 (290)
--|++|||+.+.+-++ .|++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~--~G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLL--LGLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHH--CCCCHHHHHHH
Confidence 4589999998888775 89999888654
No 90
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=41.77 E-value=39 Score=25.27 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=17.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+|+|..|. ||..++ . .+...|.+
T Consensus 66 ~~vv~~c~~g~-~s~~~a-~-~L~~~G~~ 91 (105)
T cd01525 66 KIIVIVSHSHK-HAALFA-A-FLVKCGVP 91 (105)
T ss_pred CeEEEEeCCCc-cHHHHH-H-HHHHcCCC
Confidence 58999999994 775433 2 34456653
No 91
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=40.68 E-value=1.4e+02 Score=30.52 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=34.4
Q ss_pred hhHHHHHHhcCceEEEeeCCCCCCC-------chhhhHHHHHHHHHHHHhcCCceEEEEcCCCC
Q 022901 149 KPIVERCQVLGIRHMRRPAADFDPD-------SLRSQLPKAVSLLEWAISEGKGKVYVHCTAGL 205 (290)
Q Consensus 149 ~~i~~~~~~~gI~~l~iPi~D~~~~-------~l~~~l~~av~~I~~~l~~~~~~VLVHC~aG~ 205 (290)
.+..+.+.+.|++..-|.+...+.. +..+.+..|++.|.+.-...+-.++=||.+|.
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~r~~~ldDYv~~i~~Ald~V~~~tG~~~vnl~GyC~GGt 300 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAHREWGLSTYVDALKEAVDAVRAITGSRDLNLLGACAGGL 300 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhhcCCCHHHHHHHHHHHHHHHHHhcCCCCeeEEEECcchH
Confidence 4566778889999888887754332 22234455555555443233236777999983
No 92
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=39.42 E-value=2.3e+02 Score=26.21 Aligned_cols=25 Identities=16% Similarity=-0.039 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHhcCCceEEEEcC
Q 022901 177 SQLPKAVSLLEWAISEGKGKVYVHCT 202 (290)
Q Consensus 177 ~~l~~av~~I~~~l~~~~~~VLVHC~ 202 (290)
+.+..++..+.+.+.+. .|=+|||.
T Consensus 69 ~~~~~~~~~l~~~l~~~-~pDiv~~~ 93 (365)
T TIGR00236 69 EITSNMLEGLEELLLEE-KPDIVLVQ 93 (365)
T ss_pred HHHHHHHHHHHHHHHHc-CCCEEEEe
Confidence 33444444444444443 24444444
No 93
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=38.74 E-value=1.8e+02 Score=23.92 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=31.6
Q ss_pred CchhhhHHHHHHHHHHHHhc-CCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHH
Q 022901 173 DSLRSQLPKAVSLLEWAISE-GKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYD 229 (290)
Q Consensus 173 ~~l~~~l~~av~~I~~~l~~-~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~ 229 (290)
++..+....+..++.+...+ ..+.|+|-+.+|.-| +++....|.+++..+.
T Consensus 115 Es~~~~~~R~~~~~~~l~~~~~~~~vlvVsHg~~i~------~l~~~~~~~~~~~~~~ 166 (177)
T TIGR03162 115 ESFADFYQRVSEFLEELLKAHEGDNVLIVTHGGVIR------ALLAHLLGLPLEQWWS 166 (177)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCeEEEEECHHHHH------HHHHHHhCCCHHHHhc
Confidence 45555666777777776654 235788877766433 2333445788876654
No 94
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=37.86 E-value=1.7e+02 Score=21.94 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=16.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+++|+|..| .||.. ++. .++..|++
T Consensus 59 ~~ivv~c~~g-~~s~~-a~~-~L~~~G~~ 84 (108)
T PRK00162 59 TPVMVMCYHG-NSSQG-AAQ-YLLQQGFD 84 (108)
T ss_pred CCEEEEeCCC-CCHHH-HHH-HHHHCCch
Confidence 5899999999 47643 333 34466654
No 95
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=36.60 E-value=35 Score=31.45 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=20.9
Q ss_pred CCCChHHHHHHHHHHHHCCCCHHHHHHH
Q 022901 203 AGLGRAPAVAIAYMFWFCGMKLDAAYDM 230 (290)
Q Consensus 203 aG~~RS~tvviaYLm~~~g~s~~eA~~~ 230 (290)
-|+||||+.+.+-|+ .|++.++|.++
T Consensus 166 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLL--LGLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 489999998887776 79999888543
No 96
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=36.25 E-value=2.3e+02 Score=25.61 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=47.9
Q ss_pred CCeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCC-chhhhHHHHHH
Q 022901 106 DNLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPD-SLRSQLPKAVS 184 (290)
Q Consensus 106 ~~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~-~l~~~l~~av~ 184 (290)
.+|+..--|++.+.-..|-++++|++||+=..... | ...=.+.|++.||..+-|.=+..... .....+.++++
T Consensus 168 ~~iiam~gPfs~e~n~aL~~~~~i~~lVtK~SG~~----g--~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~e~~~ 241 (248)
T PRK08057 168 AEIIALRGPFSLELERALLRQHRIDVVVTKNSGGA----G--TEAKLEAARELGIPVVMIARPALPYADREFEDVAELVA 241 (248)
T ss_pred hhEEEeeCCCCHHHHHHHHHHcCCCEEEEcCCCch----h--hHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCHHHHHH
Confidence 45666666664333234444599999998766542 1 12223788899998877754443222 34456777777
Q ss_pred HHHHHH
Q 022901 185 LLEWAI 190 (290)
Q Consensus 185 ~I~~~l 190 (290)
++.+.+
T Consensus 242 ~l~~~~ 247 (248)
T PRK08057 242 WLRHLL 247 (248)
T ss_pred HHHHhh
Confidence 776654
No 97
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=35.94 E-value=37 Score=30.92 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=20.9
Q ss_pred CCCChHHHHHHHHHHHHCCCCHHHHHHH
Q 022901 203 AGLGRAPAVAIAYMFWFCGMKLDAAYDM 230 (290)
Q Consensus 203 aG~~RS~tvviaYLm~~~g~s~~eA~~~ 230 (290)
-|+||||+.+.+-|+ .|++-++|.++
T Consensus 160 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLF--IGLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 489999998887775 89998888543
No 98
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=35.80 E-value=1.4e+02 Score=28.60 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCceEEEEcCCCCChH--HHHHHHHHHHHCCCCHHH
Q 022901 184 SLLEWAISEGKGKVYVHCTAGLGRA--PAVAIAYMFWFCGMKLDA 226 (290)
Q Consensus 184 ~~I~~~l~~~~~~VLVHC~aG~~RS--~tvviaYLm~~~g~s~~e 226 (290)
.-|.+++++| .-|.| | ||+ ++++++.+++..||+.++
T Consensus 151 ~pI~~AL~~G-ADIVI-~----GR~~D~Al~~a~~~~~~GW~~~d 189 (362)
T PF07287_consen 151 EPIVEALEAG-ADIVI-T----GRVADPALFAAPAIHEFGWSEDD 189 (362)
T ss_pred HHHHHHHHcC-CCEEE-e----CcccchHHHHhHHHHHcCCCccc
Confidence 5566777776 33444 4 565 688999999999998654
No 99
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=35.34 E-value=63 Score=24.69 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=17.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+|+|..| .||..+ ++.+...|.+
T Consensus 79 ~~iv~yc~~g-~~s~~~--~~~l~~~G~~ 104 (118)
T cd01449 79 KPVIVYCGSG-VTACVL--LLALELLGYK 104 (118)
T ss_pred CCEEEECCcH-HHHHHH--HHHHHHcCCC
Confidence 5899999998 477543 3444566664
No 100
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=35.13 E-value=40 Score=30.93 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=21.0
Q ss_pred CCCChHHHHHHHHHHHHCCCCHHHHHHH
Q 022901 203 AGLGRAPAVAIAYMFWFCGMKLDAAYDM 230 (290)
Q Consensus 203 aG~~RS~tvviaYLm~~~g~s~~eA~~~ 230 (290)
-|++|||+.+.+-|. .|++.++|.++
T Consensus 164 PGiSRSG~TI~~~l~--~G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLL--LGLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 489999998877775 89999888543
No 101
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=34.67 E-value=49 Score=24.48 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=16.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGM 222 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~ 222 (290)
.+|+|+|..| .||.. + +.++...|.
T Consensus 62 ~~ivv~c~~g-~~s~~-~-~~~l~~~G~ 86 (103)
T cd01447 62 KPFVFYCASG-WRSAL-A-GKTLQDMGL 86 (103)
T ss_pred CeEEEEcCCC-CcHHH-H-HHHHHHcCh
Confidence 5999999988 68743 3 344455664
No 102
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=34.31 E-value=1.6e+02 Score=27.49 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=15.5
Q ss_pred eEEEEcC-CCCChHHHHHHHHHHHHCCC
Q 022901 196 KVYVHCT-AGLGRAPAVAIAYMFWFCGM 222 (290)
Q Consensus 196 ~VLVHC~-aG~~RS~tvviaYLm~~~g~ 222 (290)
.|+|+|. +| .||.. ++.+| ...|+
T Consensus 76 ~vvvyC~~gG-~RS~~-aa~~L-~~~G~ 100 (311)
T TIGR03167 76 QPLLYCWRGG-MRSGS-LAWLL-AQIGF 100 (311)
T ss_pred cEEEEECCCC-hHHHH-HHHHH-HHcCC
Confidence 5999995 56 68865 33444 45665
No 103
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=33.93 E-value=1.3e+02 Score=22.96 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=12.3
Q ss_pred ceEEEEcCCCCChHHH
Q 022901 195 GKVYVHCTAGLGRAPA 210 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~t 210 (290)
.+|+|||..|-.||..
T Consensus 67 ~~iv~~C~~~g~rs~~ 82 (113)
T cd01443 67 KLAIFYCGSSQGRGPR 82 (113)
T ss_pred CEEEEECCCCCcccHH
Confidence 5899999975468754
No 104
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=33.14 E-value=2.4e+02 Score=24.85 Aligned_cols=89 Identities=15% Similarity=0.069 Sum_probs=47.8
Q ss_pred HHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCchhhhHHHHHHHHHHHHhcCCceEEE
Q 022901 120 IDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSLRSQLPKAVSLLEWAISEGKGKVYV 199 (290)
Q Consensus 120 ~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l~~~l~~av~~I~~~l~~~~~~VLV 199 (290)
++.+++ .|+...+++..-....+.......+.+.+.+.|...+.+. |.......+.+.+.+..+.+.... -++-+
T Consensus 121 i~~a~~-~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~--Dt~G~~~P~~v~~li~~l~~~~~~--~~~~~ 195 (265)
T cd03174 121 IEAAKE-AGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK--DTVGLATPEEVAELVKALREALPD--VPLGL 195 (265)
T ss_pred HHHHHH-CCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec--hhcCCcCHHHHHHHHHHHHHhCCC--CeEEE
Confidence 344565 8999999985443210100112334455667787766654 433222223455556666554432 48889
Q ss_pred EcCCCCChHHHHHH
Q 022901 200 HCTAGLGRAPAVAI 213 (290)
Q Consensus 200 HC~aG~~RS~tvvi 213 (290)
||+.-.|=+.+-++
T Consensus 196 H~Hn~~gla~an~l 209 (265)
T cd03174 196 HTHNTLGLAVANSL 209 (265)
T ss_pred EeCCCCChHHHHHH
Confidence 99876654444333
No 105
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=31.51 E-value=1.8e+02 Score=23.29 Aligned_cols=48 Identities=27% Similarity=0.420 Sum_probs=30.2
Q ss_pred HHHHHHhcCceEEEeeCCCCCCCchhhhHHHHHHHHHHHHhcCCceEEEEcCCCCChH
Q 022901 151 IVERCQVLGIRHMRRPAADFDPDSLRSQLPKAVSLLEWAISEGKGKVYVHCTAGLGRA 208 (290)
Q Consensus 151 i~~~~~~~gI~~l~iPi~D~~~~~l~~~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS 208 (290)
..+.++..|...++.|-.| ..+ +..|+..+ ...+...|+|-+..| ||-
T Consensus 51 ~~~~~~~~~~~~~~~p~kD--~TD----~e~Al~~~---~~~~~~~i~v~Ga~G-gR~ 98 (123)
T PF04263_consen 51 VLEFYKSKGVEIIHFPEKD--YTD----LEKALEYA---IEQGPDEIIVLGALG-GRF 98 (123)
T ss_dssp HHHHHHHCTTEEEEE-STT--S-H----HHHHHHHH---HHTTTSEEEEES-SS-SSH
T ss_pred HHHHHHhhccceecccccc--cCH----HHHHHHHH---HHCCCCEEEEEecCC-CcH
Confidence 4466777888889999443 333 34566666 334445899999888 786
No 106
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=31.51 E-value=1.4e+02 Score=20.02 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=22.5
Q ss_pred CCChHHHHHHHHHHHHCCCCHHHHHHHHHhhC
Q 022901 204 GLGRAPAVAIAYMFWFCGMKLDAAYDMLTSKR 235 (290)
Q Consensus 204 G~~RS~tvviaYLm~~~g~s~~eA~~~v~~~R 235 (290)
|.+|. ++.+|.-+-..|.+++.--+.++..|
T Consensus 18 gLd~e-tL~ici~L~e~GVnPeaLA~vI~elr 48 (48)
T PF12554_consen 18 GLDRE-TLSICIELCENGVNPEALAAVIKELR 48 (48)
T ss_pred CCCHH-HHHHHHHHHHCCCCHHHHHHHHHHhC
Confidence 79999 66777766689999986555555543
No 107
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=31.47 E-value=79 Score=25.71 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhcCCceEEEEcCCC
Q 022901 179 LPKAVSLLEWAISEGKGKVYVHCTAG 204 (290)
Q Consensus 179 l~~av~~I~~~l~~~~~~VLVHC~aG 204 (290)
...++..++++..+| .+|+|+|..-
T Consensus 15 ~~~~c~L~~k~~~~g-~rv~V~~~d~ 39 (137)
T PF04364_consen 15 ERFACRLAEKAYRQG-QRVLVLCPDE 39 (137)
T ss_dssp HHHHHHHHHHHHHTT---EEEE-SSH
T ss_pred HHHHHHHHHHHHHcC-CeEEEEeCCH
Confidence 456789999999998 6999999654
No 108
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=31.21 E-value=3e+02 Score=24.98 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=46.2
Q ss_pred CCeEEccCCCCcc-cHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCC-chhhhHHHHH
Q 022901 106 DNLIVGSQPQKPE-DIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPD-SLRSQLPKAV 183 (290)
Q Consensus 106 ~~LylGs~p~~~~-d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~-~l~~~l~~av 183 (290)
.+|+.+.-|++.+ +...++ ++||++||+=....... ...=.+.+++.||..+-|-=+....+ .....+.+++
T Consensus 175 ~~iia~~gPfs~e~n~al~~-~~~i~~lVtK~SG~~Gg-----~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~el~ 248 (256)
T TIGR00715 175 DRIIAMRGPFSEELEKALLR-EYRIDAVVTKASGEQGG-----ELEKVKAAEALGINVIRIARPQTIPGVAIFDDISQLN 248 (256)
T ss_pred hcEEEEeCCCCHHHHHHHHH-HcCCCEEEEcCCCCccc-----hHHHHHHHHHcCCcEEEEeCCCCCCCCccCCCHHHHH
Confidence 3466666666443 333455 59999999876653211 12223788899988777754443322 3445667777
Q ss_pred HHHHHH
Q 022901 184 SLLEWA 189 (290)
Q Consensus 184 ~~I~~~ 189 (290)
+++.+.
T Consensus 249 ~~l~~~ 254 (256)
T TIGR00715 249 QFVARL 254 (256)
T ss_pred HHHHHh
Confidence 777654
No 109
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=30.89 E-value=38 Score=30.84 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=17.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+|+|..|. |+ ++++.+| ...|..
T Consensus 232 ~~ii~yC~~G~-~A-~~~~~~l-~~~G~~ 257 (281)
T PRK11493 232 RPIIASCGSGV-TA-AVVVLAL-ATLDVP 257 (281)
T ss_pred CCEEEECCcHH-HH-HHHHHHH-HHcCCC
Confidence 58999999994 66 4344334 466664
No 110
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=29.65 E-value=58 Score=23.74 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=16.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+|+|..| .||.. ++.+| ...|.+
T Consensus 57 ~~ivv~c~~g-~~s~~-a~~~l-~~~G~~ 82 (96)
T cd01444 57 RPVVVYCYHG-NSSAQ-LAQAL-REAGFT 82 (96)
T ss_pred CCEEEEeCCC-ChHHH-HHHHH-HHcCCc
Confidence 5999999977 46643 44444 455653
No 111
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=29.57 E-value=39 Score=30.37 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=51.3
Q ss_pred ecCCeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHH-----------HHHHhcCce-EEEeeCCCCC
Q 022901 104 ITDNLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIV-----------ERCQVLGIR-HMRRPAADFD 171 (290)
Q Consensus 104 I~~~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~-----------~~~~~~gI~-~l~iPi~D~~ 171 (290)
|+.++-+.... -+|++.++. .||++||.|..+.-. -..++.+. ..+.+.|++ +.-+.+....
T Consensus 3 iD~HiH~d~r~--~eDlekMa~-sGI~~Vit~AhdP~~---~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~ 76 (254)
T COG1099 3 IDSHIHLDVRG--FEDLEKMAL-SGIREVITLAHDPYP---MKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRA 76 (254)
T ss_pred ccccccccccc--HHHHHHHHH-hChhhhhhcccCCCC---cccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCCCC
Confidence 44555555554 468888887 899999999887421 12222222 344556765 3445555555
Q ss_pred CCchhhhHHHHHHHHHHHHhcCCceEEE
Q 022901 172 PDSLRSQLPKAVSLLEWAISEGKGKVYV 199 (290)
Q Consensus 172 ~~~l~~~l~~av~~I~~~l~~~~~~VLV 199 (290)
.|+- +..++..+...+.+. ..|-|
T Consensus 77 iP~e---~~~~l~~L~~~l~~e-~VvAi 100 (254)
T COG1099 77 IPPE---LEEVLEELEELLSNE-DVVAI 100 (254)
T ss_pred CCch---HHHHHHHHHhhcccC-CeeEe
Confidence 5533 567778888777743 33443
No 112
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=28.27 E-value=1.2e+02 Score=28.36 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=38.3
Q ss_pred eecCCeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccc----cCCCchhHHHHHHhcCc-eEEEeeCCCCC
Q 022901 103 QITDNLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEY----WGIDLKPIVERCQVLGI-RHMRRPAADFD 171 (290)
Q Consensus 103 ~I~~~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~----~g~~~~~i~~~~~~~gI-~~l~iPi~D~~ 171 (290)
+..+.=|+|..- .+.++.|++ .|++.|+-+...+-... +.++. ...+.+.+.|+ ++.++|..+.+
T Consensus 232 ~~g~~~WL~P~~--~~~l~~l~~-~G~~~V~v~p~gFv~D~lETl~eidi-e~re~~~~~G~~~~~~ip~lN~~ 301 (316)
T PF00762_consen 232 RFGPGEWLGPST--EDVLEELAK-EGVKRVVVVPPGFVSDCLETLYEIDI-EYRELAEEAGGEEFVRIPCLNDS 301 (316)
T ss_dssp -SSSS-BSSSBH--HHHHHHHHH-CT-SEEEEEETT-SSSSHHHHCCCCC-HHHHHHHHHTCCEEEE---STT-
T ss_pred CCCCCCCccccH--HHHHHHHHh-cCCCeEEEECCccccccHhHHHHHHH-HHHHHHHHcCCceEEEeCCCCCC
Confidence 444455665554 567889997 89999998876642221 12332 23578888999 89999998754
No 113
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=28.17 E-value=62 Score=25.26 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=17.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGM 222 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~ 222 (290)
.+|+|+|..| .||.. ++.+| ...|.
T Consensus 73 ~~ivv~C~~G-~rs~~-aa~~L-~~~G~ 97 (122)
T cd01526 73 SPIYVVCRRG-NDSQT-AVRKL-KELGL 97 (122)
T ss_pred CcEEEECCCC-CcHHH-HHHHH-HHcCC
Confidence 5899999999 58853 44444 46666
No 114
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=27.85 E-value=2.4e+02 Score=26.84 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=17.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|+|+|..| .||.. ++..| ...|.+
T Consensus 58 ~~IvvyC~~G-~rs~~-aa~~L-~~~G~~ 83 (376)
T PRK08762 58 REIVLICASG-TRSAH-AAATL-RELGYT 83 (376)
T ss_pred CeEEEEcCCC-cHHHH-HHHHH-HHcCCC
Confidence 5899999998 58754 33333 456653
No 115
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=27.35 E-value=83 Score=25.79 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHhcCCceEEEEcCCC
Q 022901 178 QLPKAVSLLEWAISEGKGKVYVHCTAG 204 (290)
Q Consensus 178 ~l~~av~~I~~~l~~~~~~VLVHC~aG 204 (290)
.+..++..+++++.+| .+|+|+|..-
T Consensus 14 ~~~~~c~L~~ka~~~g-~rv~I~~~d~ 39 (142)
T PRK05728 14 LEALLCELAEKALRAG-WRVLVQCEDE 39 (142)
T ss_pred HHHHHHHHHHHHHHCC-CEEEEEcCCH
Confidence 4566889999999997 6999999665
No 116
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=27.33 E-value=1.6e+02 Score=25.56 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHH
Q 022901 176 RSQLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYM 216 (290)
Q Consensus 176 ~~~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYL 216 (290)
.+.+.++++.|.+++.++ ++|++ | |.|+|++++-.+-
T Consensus 24 ~~~i~~a~~~l~~~l~~~-~rI~~-~--G~GgSa~~A~~~a 60 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNG-NKILC-C--GNGTSAANAQHFA 60 (196)
T ss_pred HHHHHHHHHHHHHHHHcC-CEEEE-E--ECcHHHHHHHHHH
Confidence 356788999999999887 68887 4 6778877554443
No 117
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=27.19 E-value=1.2e+02 Score=25.81 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=32.2
Q ss_pred CCchhhhHHHHHHHHHHHHhcCCc-eEEEEcCCCCChHHHHHHHHHHHHCCCCHH
Q 022901 172 PDSLRSQLPKAVSLLEWAISEGKG-KVYVHCTAGLGRAPAVAIAYMFWFCGMKLD 225 (290)
Q Consensus 172 ~~~l~~~l~~av~~I~~~l~~~~~-~VLVHC~aG~~RS~tvviaYLm~~~g~s~~ 225 (290)
..+..+....+..+|.+......+ .|+|-|.+|.-| +.++|+ .|++..
T Consensus 122 gEs~~~~~~R~~~~~~~~~~~~~~~~vlvVsHg~~ir---~l~~~~---~~~~~~ 170 (208)
T COG0406 122 GESLADVSKRVVAALAELLRSPPGNNVLVVSHGGVIR---ALLAYL---LGLDLE 170 (208)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEChHHHH---HHHHHh---cCCChh
Confidence 345666677788888888776533 599999999777 234433 455554
No 118
>PLN02449 ferrochelatase
Probab=26.92 E-value=1.2e+02 Score=30.25 Aligned_cols=82 Identities=20% Similarity=0.135 Sum_probs=49.6
Q ss_pred eecCCeEEccCCCCcccHHHHHhhCCccEEEEcCCCCCccccC----CCchhHHHHHHhcCc-eEEEeeCCCCCCCchhh
Q 022901 103 QITDNLIVGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWG----IDLKPIVERCQVLGI-RHMRRPAADFDPDSLRS 177 (290)
Q Consensus 103 ~I~~~LylGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g----~~~~~i~~~~~~~gI-~~l~iPi~D~~~~~l~~ 177 (290)
++.|.=|++..- .+.++.|.+ .|++.|+-+.-.+-..+.. ++ ....+.+.+.|+ +|.++|..+.++. +
T Consensus 329 R~Gp~eWL~P~t--~d~L~~L~~-~Gvk~VlvvPigFvSDhiETL~EiD-iE~re~a~e~G~~~~~rVP~LN~~p~-F-- 401 (485)
T PLN02449 329 RVGPVEWLKPYT--DETIVELGK-KGVKSLLAVPISFVSEHIETLEEID-MEYRELALESGIENWGRVPALGCEPT-F-- 401 (485)
T ss_pred CCCCCCCCCCCH--HHHHHHHHH-cCCCeEEEECCcccccchHHHHHHH-HHHHHHHHHcCCceEEEcCCCCCCHH-H--
Confidence 355556776554 467788987 8999988776654322211 11 123356778898 6999999876432 2
Q ss_pred hHHHHHHHHHHHHhc
Q 022901 178 QLPKAVSLLEWAISE 192 (290)
Q Consensus 178 ~l~~av~~I~~~l~~ 192 (290)
+....+.+.+.+..
T Consensus 402 -I~~La~lV~~~l~~ 415 (485)
T PLN02449 402 -ISDLADAVIEALPY 415 (485)
T ss_pred -HHHHHHHHHHHhhc
Confidence 33334555555543
No 119
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=26.33 E-value=4.5e+02 Score=23.86 Aligned_cols=91 Identities=12% Similarity=-0.051 Sum_probs=44.7
Q ss_pred HHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCchhhhHHHHHHHHHHHHhcCCceEEE
Q 022901 120 IDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSLRSQLPKAVSLLEWAISEGKGKVYV 199 (290)
Q Consensus 120 ~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l~~~l~~av~~I~~~l~~~~~~VLV 199 (290)
++..++ .|....+++.......+..-......+.+.+.|...+.+ .|....-....+...+..+.+.+. .++-+
T Consensus 124 i~~ak~-~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l--~DT~G~~~P~~v~~lv~~l~~~~~---~~l~~ 197 (275)
T cd07937 124 IKAVKK-AGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICI--KDMAGLLTPYAAYELVKALKKEVG---LPIHL 197 (275)
T ss_pred HHHHHH-CCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEE--cCCCCCCCHHHHHHHHHHHHHhCC---CeEEE
Confidence 344554 787766666422111110000122234445567665544 454333222344445555554432 48999
Q ss_pred EcCCCCChHHHHHHHHH
Q 022901 200 HCTAGLGRAPAVAIAYM 216 (290)
Q Consensus 200 HC~aG~~RS~tvviaYL 216 (290)
||+.-.|-+.+-+++-+
T Consensus 198 H~Hnd~GlA~aN~laA~ 214 (275)
T cd07937 198 HTHDTSGLAVATYLAAA 214 (275)
T ss_pred EecCCCChHHHHHHHHH
Confidence 99887776666444444
No 120
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=26.31 E-value=70 Score=26.62 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCceEEEEcCCC
Q 022901 181 KAVSLLEWAISEGKGKVYVHCTAG 204 (290)
Q Consensus 181 ~av~~I~~~l~~~~~~VLVHC~aG 204 (290)
.++.+++++...| .+|||+|..=
T Consensus 17 ~~c~L~~k~~~~G-~rvlI~~~d~ 39 (144)
T COG2927 17 AACRLAEKAWRSG-WRVLIQCEDE 39 (144)
T ss_pred HHHHHHHHHHHcC-CeEEEEeCCH
Confidence 6789999999998 6999999543
No 121
>PHA02540 61 DNA primase; Provisional
Probab=25.74 E-value=77 Score=30.15 Aligned_cols=40 Identities=8% Similarity=-0.105 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHhhCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLTSKRP 236 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~~~Rp 236 (290)
+....||.+. |-+|. ++.+||.+.+++..||++.+.+...
T Consensus 52 ~~~~yhCFgC-Ga~Gd-~i~Flme~e~lsf~Eav~~la~~~g 91 (337)
T PHA02540 52 DGGVFKCHNC-GYHRP-FGNFLKDYEPDLYREYIMERFKERG 91 (337)
T ss_pred CceEEEecCC-CCCCC-HHHHHHHhcCCChHHHHHHHHHHhC
Confidence 3689999764 44444 8899999999999999997766554
No 122
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=25.74 E-value=58 Score=24.80 Aligned_cols=75 Identities=16% Similarity=0.215 Sum_probs=37.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHH---HHHCCCC-------HHHHHHHHHhhCCC--CCCHHHHHHHHHHHhhcCCCCCCcc
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYM---FWFCGMK-------LDAAYDMLTSKRPC--GPNKTAIRGATYDLAKDDPWKEPFE 262 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYL---m~~~g~s-------~~eA~~~v~~~Rp~--~Pn~~f~~ql~~~l~~~~~~~~~~~ 262 (290)
.+||+-|.+|++ |+.++ --+ ....|++ ..++-+.+...--. .|...+...-......+ ..-|..
T Consensus 4 ~~ILl~C~~G~s-SS~l~-~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~--~~ipv~ 79 (95)
T TIGR00853 4 TNILLLCAAGMS-TSLLV-NKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDK--KGIPVE 79 (95)
T ss_pred cEEEEECCCchh-HHHHH-HHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhh--cCCCEE
Confidence 479999999998 54433 322 2344553 33332222221111 57666654444443321 112455
Q ss_pred CCCcccccccc
Q 022901 263 NLPEHAFGNVA 273 (290)
Q Consensus 263 ~lp~~~~~~l~ 273 (290)
.++...|..++
T Consensus 80 ~I~~~~Y~~md 90 (95)
T TIGR00853 80 VINGAQYGKLT 90 (95)
T ss_pred EeChhhcccCC
Confidence 66666665544
No 123
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=24.92 E-value=1.9e+02 Score=24.58 Aligned_cols=51 Identities=18% Similarity=0.095 Sum_probs=30.4
Q ss_pred CchhhhHHHHHHHHHHHHhc------CCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHH
Q 022901 173 DSLRSQLPKAVSLLEWAISE------GKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYD 229 (290)
Q Consensus 173 ~~l~~~l~~av~~I~~~l~~------~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~ 229 (290)
++..+....+..++.+..+. .++.|+|-|.+|.-|+ +++ ...|++++....
T Consensus 117 Es~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsHg~~ir~---ll~---~~lg~~~~~~~~ 173 (204)
T TIGR03848 117 ESLAQVQARAVAAVREHDARLAAEHGPDAVWVACSHGDVIKS---VLA---DALGMHLDLFQR 173 (204)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEeCChHHHH---HHH---HHhCCCHHHhhe
Confidence 45555556666666665533 2247899899887654 233 335777765443
No 124
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=24.84 E-value=78 Score=24.59 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC-HHHHHHHHHhh
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK-LDAAYDMLTSK 234 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s-~~eA~~~v~~~ 234 (290)
.+|+=||..| .-++-||+.+.... -.||+..-...
T Consensus 25 ~tv~~hcftG-----sdVVdWLv~~~~v~~r~EAl~las~L 60 (99)
T cd04445 25 KKVFNHCFTG-----SCVIDWLVSNQSVRNRQEGLMLASSL 60 (99)
T ss_pred hccccceecc-----cHHHHHHHHhhcccchHHHHHHHHHH
Confidence 4899999998 34899999888885 88887766554
No 125
>KOG1004 consensus Exosomal 3'-5' exoribonuclease complex subunit Rrp40 [Translation, ribosomal structure and biogenesis]
Probab=24.68 E-value=1.6e+02 Score=26.30 Aligned_cols=38 Identities=11% Similarity=0.059 Sum_probs=30.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHhh
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLTSK 234 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~~~ 234 (290)
|+|.|||..= +...+++-+||....|+-++++.++++.
T Consensus 186 GriWV~ae~~--~~t~~i~~~l~~~e~~td~~q~~~~k~~ 223 (230)
T KOG1004|consen 186 GRIWVKAETL--SDTLIIANILMNCEFMTDTQQRIMVKQL 223 (230)
T ss_pred ceEEEeccCc--chHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 6999999875 5566777889999999999988776653
No 126
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=24.51 E-value=6e+02 Score=25.32 Aligned_cols=89 Identities=16% Similarity=0.172 Sum_probs=56.4
Q ss_pred EEccCCCCcccHHH---HHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCCCchhhhHHHHHHH
Q 022901 109 IVGSQPQKPEDIDH---LKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDPDSLRSQLPKAVSL 185 (290)
Q Consensus 109 ylGs~p~~~~d~~~---L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~l~~~l~~av~~ 185 (290)
+.|+.|.-.+|+.. +.++.|.+||-=.+..... ..+ .++....++.|+..+.+.+.+.........+..+-..
T Consensus 116 ~tGGEPTvr~DL~eiv~~a~e~g~~hVqinTnGirl---A~~-~~~~~~l~~ag~~tvYlsFDG~~e~~~~~~~~eIk~a 191 (475)
T COG1964 116 FTGGEPTLRDDLIEIIKIAREEGYDHVQLNTNGIRL---AFD-PEYVKKLREAGVNTVYLSFDGVTPKTNWKNHWEIKQA 191 (475)
T ss_pred ecCCCccchhhHHHHHHHHhhcCccEEEEccCceee---ccC-HHHHHHHHhcCCcEEEEecCCCCCCchhhHhhhhHHH
Confidence 44777765666653 3345899887544333221 112 3455666778898888888888777665555555567
Q ss_pred HHHHHhcCC-ceEEEEc
Q 022901 186 LEWAISEGK-GKVYVHC 201 (290)
Q Consensus 186 I~~~l~~~~-~~VLVHC 201 (290)
|+.+...|. ..|||-=
T Consensus 192 len~r~~g~~svVLVpt 208 (475)
T COG1964 192 LENCRKAGLPSVVLVPT 208 (475)
T ss_pred HHHHHhcCCCcEEEEee
Confidence 777777663 3788843
No 127
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=24.20 E-value=1.4e+02 Score=30.66 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHHH---HCCCCHHHHHHHHHh
Q 022901 193 GKGKVYVHCTAGLGRAPAVAIAYMFW---FCGMKLDAAYDMLTS 233 (290)
Q Consensus 193 ~~~~VLVHC~aG~~RS~tvviaYLm~---~~g~s~~eA~~~v~~ 233 (290)
+..|..|||.-|. +++++.+||+ ..+++.++|++.++.
T Consensus 159 ~~~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~ 199 (601)
T TIGR02094 159 GIDPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRK 199 (601)
T ss_pred CCCceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 3358999999996 6888999864 457889999876654
No 128
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=24.19 E-value=57 Score=30.27 Aligned_cols=13 Identities=46% Similarity=0.795 Sum_probs=10.6
Q ss_pred ceEEEEcCCCCChH
Q 022901 195 GKVYVHCTAGLGRA 208 (290)
Q Consensus 195 ~~VLVHC~aG~~RS 208 (290)
.+|.+.|..|. |+
T Consensus 235 ~~vI~yCgsG~-~A 247 (285)
T COG2897 235 KEVIVYCGSGV-RA 247 (285)
T ss_pred CCEEEEcCCch-HH
Confidence 58999999995 44
No 129
>PLN02790 transketolase
Probab=23.72 E-value=1.7e+02 Score=30.44 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=32.0
Q ss_pred hhHHHHHHhcCceEEEeeCCCCCCCchhhhHHHHHHHHHHHHhcCCceEEEEcCCCCChH
Q 022901 149 KPIVERCQVLGIRHMRRPAADFDPDSLRSQLPKAVSLLEWAISEGKGKVYVHCTAGLGRA 208 (290)
Q Consensus 149 ~~i~~~~~~~gI~~l~iPi~D~~~~~l~~~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS 208 (290)
+.+.+.++..|++++.+ .|.+ -+ +....+.+.++...+++|++|||+.=+|+.
T Consensus 190 ~~~~~~f~a~G~~~~~v--dgg~-hd----~~~l~~a~~~a~~~~~~P~lI~~~T~kG~G 242 (654)
T PLN02790 190 EDVDKRYEALGWHTIWV--KNGN-TD----YDEIRAAIKEAKAVTDKPTLIKVTTTIGYG 242 (654)
T ss_pred hhHHHHHHHcCCeEEEE--CCCC-CC----HHHHHHHHHHHHhcCCCeEEEEEEEeecCC
Confidence 45567888889988874 3311 12 223344444444423479999998866664
No 130
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=23.57 E-value=83 Score=28.97 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=18.4
Q ss_pred CCCChHHHHHHHHHHHHCCCCHHHHHH
Q 022901 203 AGLGRAPAVAIAYMFWFCGMKLDAAYD 229 (290)
Q Consensus 203 aG~~RS~tvviaYLm~~~g~s~~eA~~ 229 (290)
-|.||||+-+.+-|. .|.+.++|.+
T Consensus 165 PG~SRSGaTI~~~ll--lG~~r~~Aae 189 (270)
T COG1968 165 PGTSRSGATISGGLL--LGLSREAAAE 189 (270)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHH
Confidence 479999997777665 6777776643
No 131
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=23.41 E-value=89 Score=23.00 Aligned_cols=13 Identities=38% Similarity=0.905 Sum_probs=11.3
Q ss_pred eEEEEcCCCCChH
Q 022901 196 KVYVHCTAGLGRA 208 (290)
Q Consensus 196 ~VLVHC~aG~~RS 208 (290)
+|+|.|.+|+|=|
T Consensus 2 kilvvCg~G~gtS 14 (87)
T cd05567 2 KIVFACDAGMGSS 14 (87)
T ss_pred EEEEECCCCccHH
Confidence 6999999998855
No 132
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=22.67 E-value=1.9e+02 Score=26.46 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=0.0
Q ss_pred EccCCCCcccHHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCCCCCC-CchhhhHHHHHHHHHH
Q 022901 110 VGSQPQKPEDIDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAADFDP-DSLRSQLPKAVSLLEW 188 (290)
Q Consensus 110 lGs~p~~~~d~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~D~~~-~~l~~~l~~av~~I~~ 188 (290)
+|+......-.+.|++ ++|+.|||.++++-... .+.-.+.|++.||.|+++.=+.-.. .+-...+.+.-+.+.-
T Consensus 49 ~~G~l~~e~l~~~l~e-~~i~llIDATHPyAa~i----S~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~ 123 (257)
T COG2099 49 VGGFLGAEGLAAFLRE-EGIDLLIDATHPYAARI----SQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEA 123 (257)
T ss_pred ecCcCCHHHHHHHHHH-cCCCEEEECCChHHHHH----HHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHH
Q ss_pred HHhcCCceEEE
Q 022901 189 AISEGKGKVYV 199 (290)
Q Consensus 189 ~l~~~~~~VLV 199 (290)
+-+.+ .+|+.
T Consensus 124 ~~~~~-~rVfl 133 (257)
T COG2099 124 AKQLG-RRVFL 133 (257)
T ss_pred HhccC-CcEEE
No 133
>PRK01295 phosphoglyceromutase; Provisional
Probab=22.52 E-value=3.9e+02 Score=22.99 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=29.6
Q ss_pred CchhhhHHHHHHHHHH-HHhc--CCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHH
Q 022901 173 DSLRSQLPKAVSLLEW-AISE--GKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYD 229 (290)
Q Consensus 173 ~~l~~~l~~av~~I~~-~l~~--~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~ 229 (290)
.+..+....+..++.+ .+.+ .++.|+|-|.+|.-|+ .+.+..++++++...
T Consensus 126 ES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVtHg~~ir~------l~~~~l~~~~~~~~~ 179 (206)
T PRK01295 126 ESLKDTGARVLPYYLQEILPRVLRGERVLVAAHGNSLRA------LVMVLDGLTPEQILK 179 (206)
T ss_pred CCHHHHHHHHHHHHHHHHHHhccCCCeEEEEcChHHHHH------HHHHHhCCCHHHHhh
Confidence 4555566666665433 3221 2257899888775444 233456888876554
No 134
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=22.49 E-value=7.4e+02 Score=25.07 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=30.7
Q ss_pred hHHHHHHhcCceEEEeeCCCCCCC----chh----hhHHHHHHHHHHHHhcCCceEEEEcCCC
Q 022901 150 PIVERCQVLGIRHMRRPAADFDPD----SLR----SQLPKAVSLLEWAISEGKGKVYVHCTAG 204 (290)
Q Consensus 150 ~i~~~~~~~gI~~l~iPi~D~~~~----~l~----~~l~~av~~I~~~l~~~~~~VLVHC~aG 204 (290)
+..+.+.+.|...+-+-++..+.. ++. +.+..+++.|.+.....+-.++=||.+|
T Consensus 211 Slv~~L~~qGf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~~g~~kv~lvG~cmGG 273 (532)
T TIGR01838 211 SLVRWLVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEAITGEKQVNCVGYCIGG 273 (532)
T ss_pred HHHHHHHHCCcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHHHhcCCCCeEEEEECcCc
Confidence 455666667777766666554322 111 2344555555544433333677799998
No 135
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=22.13 E-value=1.7e+02 Score=28.07 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=35.5
Q ss_pred HHHHHhhCCccEEEEcCCCCCccccCCCchhHHHHHHhcCceEEEeeCC
Q 022901 120 IDHLKQEERVAYILNLQQDKDIEYWGIDLKPIVERCQVLGIRHMRRPAA 168 (290)
Q Consensus 120 ~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~~~~~~~gI~~l~iPi~ 168 (290)
+..+.+++++..||.+..-....+ ..+...+.+..++.||-++.+-..
T Consensus 313 i~~lvke~~aDGVI~~~~~~C~~~-~~e~~~lk~~l~e~GIP~L~id~~ 360 (380)
T TIGR02263 313 LLDQVRKNAAEGVIFAAPSFCDPA-LLERPMLAARCKEHGIPQIAFKYA 360 (380)
T ss_pred HHHHHHHhCCCEEEEhHhhcCChh-hhhHHHHHHHHHHCCCCEEEEEec
Confidence 444445699999999988766554 345566778889999999999433
No 136
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=22.11 E-value=1.4e+02 Score=26.22 Aligned_cols=35 Identities=29% Similarity=0.526 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHH
Q 022901 178 QLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWF 219 (290)
Q Consensus 178 ~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~ 219 (290)
.|.++++.|.++ .|+|+| .|+||||.++=++-|..
T Consensus 27 ~~~~a~~~i~~~----~gkv~V---~G~GkSG~Igkk~Aa~L 61 (202)
T COG0794 27 DFVRAVELILEC----KGKVFV---TGVGKSGLIGKKFAARL 61 (202)
T ss_pred HHHHHHHHHHhc----CCcEEE---EcCChhHHHHHHHHHHH
Confidence 455555555543 367887 58999999887665543
No 137
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=22.08 E-value=1.2e+02 Score=25.46 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHhcCCceEEEEcCCC
Q 022901 178 QLPKAVSLLEWAISEGKGKVYVHCTAG 204 (290)
Q Consensus 178 ~l~~av~~I~~~l~~~~~~VLVHC~aG 204 (290)
.+..++..+++++.+| .+|+|+|...
T Consensus 14 ~~~~acrL~~Ka~~~G-~rv~I~~~d~ 39 (154)
T PRK06646 14 LLKSILLLIEKCYYSD-LKSVILTADA 39 (154)
T ss_pred HHHHHHHHHHHHHHcC-CEEEEEcCCH
Confidence 4567899999999997 6999999766
No 138
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=22.01 E-value=4.7e+02 Score=23.66 Aligned_cols=88 Identities=16% Similarity=0.127 Sum_probs=49.9
Q ss_pred HHHHHhhCCccEEEEcCCCCCccccCCCchhHH---HHHHhcCceEEEeeCCCCCCCchhhhHHHHHHHHHHHHhcCCce
Q 022901 120 IDHLKQEERVAYILNLQQDKDIEYWGIDLKPIV---ERCQVLGIRHMRRPAADFDPDSLRSQLPKAVSLLEWAISEGKGK 196 (290)
Q Consensus 120 ~~~L~~~~gI~~VvnL~~~~e~~~~g~~~~~i~---~~~~~~gI~~l~iPi~D~~~~~l~~~l~~av~~I~~~l~~~~~~ 196 (290)
++..++ +|+...+++..... .+++.+. +.+.+.|...+ -+.|....-....+.+.+..+.+.+..+ -+
T Consensus 115 i~~ak~-~G~~v~~~~~~a~~-----~~~~~~~~~~~~~~~~g~~~i--~l~DT~G~~~P~~v~~lv~~l~~~~~~~-~~ 185 (266)
T cd07944 115 IKAIKE-KGYEVFFNLMAISG-----YSDEELLELLELVNEIKPDVF--YIVDSFGSMYPEDIKRIISLLRSNLDKD-IK 185 (266)
T ss_pred HHHHHH-CCCeEEEEEEeecC-----CCHHHHHHHHHHHHhCCCCEE--EEecCCCCCCHHHHHHHHHHHHHhcCCC-ce
Confidence 334454 89888888766533 2333333 33445676554 4445443333345556666666554332 58
Q ss_pred EEEEcCCCCChHHHHHHHHH
Q 022901 197 VYVHCTAGLGRAPAVAIAYM 216 (290)
Q Consensus 197 VLVHC~aG~~RS~tvviaYL 216 (290)
+-+||+.-.|=+.+-+++-+
T Consensus 186 i~~H~Hn~~Gla~AN~laA~ 205 (266)
T cd07944 186 LGFHAHNNLQLALANTLEAI 205 (266)
T ss_pred EEEEeCCCccHHHHHHHHHH
Confidence 99999887776666555444
No 139
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=21.97 E-value=88 Score=28.84 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=37.8
Q ss_pred HHhhCCccEEEEcCCCCCcccc--CCCchhHHHHHHhcCceEEEeeCCCCCCCc-hhhhHHHHHHHHHHHHhcCCceEEE
Q 022901 123 LKQEERVAYILNLQQDKDIEYW--GIDLKPIVERCQVLGIRHMRRPAADFDPDS-LRSQLPKAVSLLEWAISEGKGKVYV 199 (290)
Q Consensus 123 L~~~~gI~~VvnL~~~~e~~~~--g~~~~~i~~~~~~~gI~~l~iPi~D~~~~~-l~~~l~~av~~I~~~l~~~~~~VLV 199 (290)
+.+++|.++.|...-+....+. ........+.|++.|++|...-.+|..... ....-+.+.+-|-+.+.+-+..+.+
T Consensus 125 ~Ak~mGAktFVh~sfprhms~~~l~~Rr~~M~~~C~~lGi~fv~~taPDP~sd~gv~gaqqfIlE~vp~~i~kYGkdtaf 204 (275)
T PF12683_consen 125 AAKKMGAKTFVHYSFPRHMSYELLARRRDIMEEACKDLGIKFVEVTAPDPTSDVGVAGAQQFILEDVPKWIKKYGKDTAF 204 (275)
T ss_dssp HHHHTT-S-EEEEEETTGGGSHHHHHHHHHHHHHHHHCT--EEEEEE---SSTCHHHHHHHHHHHHHHHHHHHH-S--EE
T ss_pred HHHHcCCceEEEEechhhcchHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHhCCceeE
Confidence 3335888888887655443321 112234558899999999999666633221 1111111222223333332357888
Q ss_pred EcCCC
Q 022901 200 HCTAG 204 (290)
Q Consensus 200 HC~aG 204 (290)
.|+..
T Consensus 205 f~TN~ 209 (275)
T PF12683_consen 205 FCTND 209 (275)
T ss_dssp EESSH
T ss_pred EecCc
Confidence 89765
No 140
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=21.93 E-value=5.6e+02 Score=23.74 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=40.1
Q ss_pred ceEEEeeCCCCCCC-----chhhhHHHHHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHHHHH
Q 022901 160 IRHMRRPAADFDPD-----SLRSQLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYDMLT 232 (290)
Q Consensus 160 I~~l~iPi~D~~~~-----~l~~~l~~av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~~v~ 232 (290)
+...+.|..|.... +....++.-+...+.+..+ +++=++|..|+. ++ =+.+|+.+. +++++|.+.++
T Consensus 36 ~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e--~~~~~~~vvGvH--Pa-E~~~l~e~~-~~peea~e~m~ 107 (285)
T COG1831 36 LILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREE--GPVEAYAVVGVH--PA-EVSRLAEAG-RSPEEALEEMR 107 (285)
T ss_pred EEEeecccccccCCCCcHHHHHHHHHHHHHHHHHHHHh--cCceeEEEeccC--HH-HHHHHHHhc-cChHHHHHHHH
Confidence 33444555555444 4444444445555444333 467789999987 44 667787555 88887766654
No 141
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=21.70 E-value=1.6e+02 Score=28.37 Aligned_cols=13 Identities=38% Similarity=0.923 Sum_probs=10.0
Q ss_pred hcCCceEEEEcCCC
Q 022901 191 SEGKGKVYVHCTAG 204 (290)
Q Consensus 191 ~~~~~~VLVHC~aG 204 (290)
..| ..||.||.+|
T Consensus 165 ~dg-~~ILThcnsg 177 (363)
T PRK05772 165 NDG-DTVLTQCNAG 177 (363)
T ss_pred CCC-CEEEEecCCc
Confidence 344 4899999887
No 142
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=21.48 E-value=1.3e+02 Score=27.21 Aligned_cols=51 Identities=12% Similarity=-0.071 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCceEEEEcCCCCChHHHHHHHH------HHHHCCCCHHHHHHHHHh
Q 022901 182 AVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAY------MFWFCGMKLDAAYDMLTS 233 (290)
Q Consensus 182 av~~I~~~l~~~~~~VLVHC~aG~~RS~tvviaY------Lm~~~g~s~~eA~~~v~~ 233 (290)
...+|+-+.+.+ .||.|||....+..--++-.| +++...-+++.|-.+++.
T Consensus 116 f~~ql~lA~~~~-~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~fsG~~~~a~~~l~~ 172 (258)
T PRK11449 116 LDEQLKLAKRYD-LPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQL 172 (258)
T ss_pred HHHHHHHHHHhC-CCEEEEecCccHHHHHHHHhcCCCCCeEEEcCCCCHHHHHHHHHC
Confidence 344555555544 589999986544433333322 111223377888888775
No 143
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=21.15 E-value=2.9e+02 Score=26.05 Aligned_cols=8 Identities=25% Similarity=0.152 Sum_probs=7.1
Q ss_pred ceEEEEcC
Q 022901 195 GKVYVHCT 202 (290)
Q Consensus 195 ~~VLVHC~ 202 (290)
.+|.|||.
T Consensus 134 ~~v~~H~E 141 (374)
T cd01317 134 LPIIVHPE 141 (374)
T ss_pred CeEEEecC
Confidence 69999995
No 144
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=21.11 E-value=1.4e+02 Score=30.71 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=17.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGMK 223 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~s 223 (290)
.+|.|+|..|. ||+. + +++++..|.+
T Consensus 224 ~~VVvYC~sG~-rAa~-~-~~~L~~lG~~ 249 (610)
T PRK09629 224 KEVITHCQTHH-RSGF-T-YLVAKALGYP 249 (610)
T ss_pred CCEEEECCCCh-HHHH-H-HHHHHHcCCC
Confidence 58999999994 6654 3 3344567764
No 145
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=20.72 E-value=2.2e+02 Score=27.09 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=16.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHHHHCCC
Q 022901 195 GKVYVHCTAGLGRAPAVAIAYMFWFCGM 222 (290)
Q Consensus 195 ~~VLVHC~aG~~RS~tvviaYLm~~~g~ 222 (290)
.+|+|+|..|-.||..+ +. ++...|+
T Consensus 89 ~~ivvyC~rgG~RS~~a-a~-~L~~~G~ 114 (345)
T PRK11784 89 PRGLLYCWRGGLRSGSV-QQ-WLKEAGI 114 (345)
T ss_pred CeEEEEECCCChHHHHH-HH-HHHHcCC
Confidence 58999996443698764 33 3345665
No 146
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=20.42 E-value=2.4e+02 Score=24.80 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=32.9
Q ss_pred CchhhhHHHHHHHHHHHHh---cCCceEEEEcCCCCChHHHHHHHHHHHHCCCCHHHHHH
Q 022901 173 DSLRSQLPKAVSLLEWAIS---EGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMKLDAAYD 229 (290)
Q Consensus 173 ~~l~~~l~~av~~I~~~l~---~~~~~VLVHC~aG~~RS~tvviaYLm~~~g~s~~eA~~ 229 (290)
.++.+....+..++++.+. ..++.|+|-|.+|.-|+ +++| ..|+++++..+
T Consensus 150 Es~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~vir~---ll~~---~~~~~~~~~~~ 203 (228)
T PRK14116 150 ENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLRA---LTKY---IENISDEDIMN 203 (228)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHH---HHHH---HhCCCHHHHHh
Confidence 4566666777777877553 12358999999997665 3343 34777775443
Done!