BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022902
         (290 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774
          Length = 355

 Score = 27.7 bits (60), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 13/78 (16%)

Query: 215 AVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPY--MELVNTYNTGKIVELE 272
           A  AY++ +L+  ++H    S L  +T    Q+ L+ F   Y  MEL++  N  +++++E
Sbjct: 67  AKRAYRELVLMKXVNHKNIISLLNVFT---PQKTLEEFQDVYLVMELMDA-NLXQVIQME 122

Query: 273 TYVQTNREKFESVSYLLF 290
                     E +SYLL+
Sbjct: 123 L-------DHERMSYLLY 133


>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737
          Length = 364

 Score = 27.3 bits (59), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 13/78 (16%)

Query: 215 AVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPY--MELVNTYNTGKIVELE 272
           A  AY++ +L+  ++H    S L  +T    Q+ L+ F   Y  MEL++  N  +++++E
Sbjct: 67  AKRAYRELVLMKXVNHKNIISLLNVFT---PQKTLEEFQDVYLVMELMDA-NLXQVIQME 122

Query: 273 TYVQTNREKFESVSYLLF 290
                     E +SYLL+
Sbjct: 123 L-------DHERMSYLLY 133


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,676,817
Number of Sequences: 62578
Number of extensions: 285627
Number of successful extensions: 646
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 22
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)