BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022902
(290 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W575|CSN3_ARATH COP9 signalosome complex subunit 3 OS=Arabidopsis thaliana GN=CSN3
PE=1 SV=2
Length = 429
Score = 351 bits (901), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 171/283 (60%), Positives = 213/283 (75%)
Query: 1 MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLY 60
+ S+E ++T IQGLS + D++AL D L+ A+D LR+E S LDQLD SKHSLGYLY
Sbjct: 5 VNSVEAVITSIQGLSGSPEDLSALHDLLRGAQDSLRAEPGVNFSTLDQLDASKHSLGYLY 64
Query: 61 FLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIR 120
FLE ++KE+A +PIIARFI SC A QIR KF+++CK KD V+ L P+R
Sbjct: 65 FLEVLTCGPVSKEKAAYEIPIIARFINSCDAGQIRLASYKFVSLCKILKDHVIALGDPLR 124
Query: 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC 180
GVGP+L A++K+Q S++ LT LHP+ LQLCL AK YK+G S+L DDI EI+ PRDFFLY
Sbjct: 125 GVGPLLNAVQKLQVSSKRLTALHPDVLQLCLQAKSYKSGFSILSDDIVEIDQPRDFFLYS 184
Query: 181 YYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKY 240
YYGGMI IG KRF+KALELL+NVVTAPM +NAIA+EAYKKYILVSLIH+GQF++TLPK
Sbjct: 185 YYGGMICIGLKRFQKALELLYNVVTAPMHQVNAIALEAYKKYILVSLIHNGQFTNTLPKC 244
Query: 241 TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFE 283
S+AAQR+ KN++ PY+EL N YN GKI ELE V +FE
Sbjct: 245 ASTAAQRSFKNYTGPYIELGNCYNDGKIGELEALVVARNAEFE 287
>sp|Q6P2U9|CSN3_DANRE COP9 signalosome complex subunit 3 OS=Danio rerio GN=cops3 PE=2
SV=1
Length = 423
Score = 168 bits (425), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/286 (36%), Positives = 151/286 (52%), Gaps = 9/286 (3%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNNVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDIQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 -FVKFSMPNIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
+ AI K+Q +T LT++H + QLCLLAKC+K + LE D+ +I N D F
Sbjct: 122 SILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPAVPFLELDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +EAYKKYILVSLI HG+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFFEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKF 282
LPKYTS R +K S Y EL Y T EL V + E F
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQIYATNNPAELRALVNKHSETF 286
>sp|Q5RFS2|CSN3_PONAB COP9 signalosome complex subunit 3 OS=Pongo abelii GN=COPS3 PE=2
SV=1
Length = 423
Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 153/286 (53%), Gaps = 9/286 (3%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKF 282
LPKYTS R +K S Y EL Y+T EL V + E F
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETF 286
>sp|Q4R898|CSN3_MACFA COP9 signalosome complex subunit 3 OS=Macaca fascicularis GN=COPS3
PE=2 SV=1
Length = 423
Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 153/286 (53%), Gaps = 9/286 (3%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKF 282
LPKYTS R +K S Y EL Y+T EL V + E F
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETF 286
>sp|Q9UNS2|CSN3_HUMAN COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1
SV=3
Length = 423
Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 153/286 (53%), Gaps = 9/286 (3%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKF 282
LPKYTS R +K S Y EL Y+T EL V + E F
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETF 286
>sp|Q68FW9|CSN3_RAT COP9 signalosome complex subunit 3 OS=Rattus norvegicus GN=Cops3
PE=2 SV=1
Length = 423
Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 153/286 (53%), Gaps = 9/286 (3%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKF 282
LPKYTS R +K S Y EL Y+T EL V + E F
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETF 286
>sp|O88543|CSN3_MOUSE COP9 signalosome complex subunit 3 OS=Mus musculus GN=Cops3 PE=1
SV=3
Length = 423
Score = 165 bits (418), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 153/286 (53%), Gaps = 9/286 (3%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKF 282
LPKYTS R +K S Y EL Y+T EL V + E F
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVSKHSETF 286
>sp|Q28IV6|CSN3_XENTR COP9 signalosome complex subunit 3 OS=Xenopus tropicalis GN=cops3
PE=2 SV=1
Length = 423
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 152/286 (53%), Gaps = 9/286 (3%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LSS +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSSQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
+ AI K+Q + LT++H + QL LLAKC+K L+ L+ D+ +I N D F
Sbjct: 122 CVLRQAIDKMQMNANQLTSIHADLCQLSLLAKCFKPALAYLDVDMMDICKENGAYDAKPF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +EAYKKYILVSLI HG+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKF 282
LPKYTS R +K S Y EL Y+T EL V + E F
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPAELRNLVSKHNETF 286
>sp|A6H7B5|CSN3_BOVIN COP9 signalosome complex subunit 3 OS=Bos taurus GN=COPS3 PE=2 SV=1
Length = 423
Score = 164 bits (416), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 154/286 (53%), Gaps = 9/286 (3%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GVLRQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMVDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGM++ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMVYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKF 282
LPKYTS R +K S Y EL Y+T EL + V + E F
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRSLVTKHSEIF 286
>sp|Q5ZJF1|CSN3_CHICK COP9 signalosome complex subunit 3 OS=Gallus gallus GN=COPS3 PE=2
SV=1
Length = 423
Score = 164 bits (416), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 153/286 (53%), Gaps = 9/286 (3%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
+ AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 SILRQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKF 282
LPKYTS R +K S Y EL Y+T K EL V + E F
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNKPSELRNLVNKHSETF 286
>sp|Q7ZTN8|CSN3_XENLA COP9 signalosome complex subunit 3 OS=Xenopus laevis GN=cops3 PE=2
SV=1
Length = 423
Score = 164 bits (415), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 152/286 (53%), Gaps = 9/286 (3%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LSS +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSSQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
+ AI K+Q + LT++H + QL LLAKC+K L+ L+ D+ +I N D F
Sbjct: 122 CVIRQAIDKMQMNANQLTSIHGDLCQLSLLAKCFKPALAYLDVDMMDICKENGAYDAKPF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +A+ +T P +++ I +EAYKKYILVSLI HG+
Sbjct: 182 LCYYYYGGMIYTGLKNFERAMYFYEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKF 282
LPKYTS R +K S Y EL Y+T EL V + E F
Sbjct: 241 LPKYTSQVVGRFIKPLSNAYHELAQVYSTNNPAELRNLVSKHNETF 286
>sp|Q54E53|CSN3_DICDI COP9 signalosome complex subunit 3 OS=Dictyostelium discoideum
GN=csn3 PE=1 SV=1
Length = 418
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 145/271 (53%), Gaps = 12/271 (4%)
Query: 24 LKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIA 83
LK+ LK E L R + L + L LD HSLG L L+ S + + +
Sbjct: 16 LKNLLKYEEQLER-QHVSLDNILGALDVRNHSLGQLLVLK--AKGSDQGKNRSVFIDQCN 72
Query: 84 RFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSS--TEHLTT 141
F +C+ EQ+R P + + K Y + + L+ PIRGV + A+ + + T LT
Sbjct: 73 NFFRNCNVEQVRLAPAQLSQLSKFYTEALYELKQPIRGVAVLKDALNILSDNKPTTTLTP 132
Query: 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP------RDFFLYCYYGGMIFIGQKRFRK 195
+H +FLQLC+L+KCY L ++E +I IN +D Y YY G+IF K+++K
Sbjct: 133 IHTDFLQLCILSKCYHQALPLIESNITHINPEQSSIAIKDILCYFYYSGIIFTAFKKYKK 192
Query: 196 ALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQP 255
A+E V+TAP S+++AI VEAYKKY++V LI G PK T + QRN+K+ +P
Sbjct: 193 AIEAFKFVITAPASALSAITVEAYKKYLIVYLIQFGSVQH-FPKCTPAVVQRNIKSHCKP 251
Query: 256 YMELVNTYNTGKIVELETYVQTNREKFESVS 286
Y E V +++ G I ++ + E F+ S
Sbjct: 252 YTEFVQSFSNGNINDIMNKASSGAEFFQKDS 282
>sp|Q8SYG2|CSN3_DROME COP9 signalosome complex subunit 3 OS=Drosophila melanogaster
GN=CSN3 PE=2 SV=2
Length = 445
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 141/302 (46%), Gaps = 25/302 (8%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++EN V Q++ LS++ S L + L + LL + L + L+ LD +HSLG LY L
Sbjct: 4 ALENYVNQVRTLSASGS-YRELAEELPESLSLLARNWSILDNVLETLDMQQHSLGVLYVL 62
Query: 63 EPCMYCSITKE-RANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRG 121
++ + T L+ ++ F+ + EQ+RY F C + + V+ I G
Sbjct: 63 LAKLHSASTANPEPVQLIQLMRDFVQRNNNEQLRYAVCAFYETCHLFTEFVVQKNLSILG 122
Query: 122 VGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI----------- 170
+ + AI +I+ LT +H + L L AK + L L+ DI +I
Sbjct: 123 IRIISRAIDQIRQLETQLTPIHADLCLLSLKAKNFSVVLPYLDADITDISTVAAECKTQQ 182
Query: 171 ----------NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYK 220
N + F LY YYGGMI+ K + +AL +T P +++ I +EAYK
Sbjct: 183 QQQSQHADANNDAKYFLLYFYYGGMIYTAVKNYERALYFFEVCITTPAMAMSHIMLEAYK 242
Query: 221 KYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNRE 280
K+++VSLI G+ + +PK T R +K + Y +LVN Y EL + E
Sbjct: 243 KFLMVSLIVEGKI-AYIPKNTQVIG-RFMKPMANHYHDLVNVYANSSSEELRIIILKYSE 300
Query: 281 KF 282
F
Sbjct: 301 AF 302
>sp|Q5B0Y2|CSN3_EMENI COP9 signalosome complex subunit 3 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnC PE=1 SV=2
Length = 496
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 119/275 (43%), Gaps = 45/275 (16%)
Query: 44 SFLDQLDPSKHSLGYLYFL---------EPCMYCSITKERANTLVPIIARFITSCSAEQI 94
+L+ + P+ HSL YLY L + + + TL +F+ S QI
Sbjct: 51 GYLEAISPAVHSLSYLYLLRIRIQQLQEKTAVGVPNDLQPGGTLWNQTVKFLRSFDPIQI 110
Query: 95 RYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAK 154
RYV ++ + + L + PI V + A+ ++ ++ T+LH ++L LL+
Sbjct: 111 RYVGHEWRELVDSVANAALSVSKPILAVKMIRDALERLNTAGV-FTSLHLMLVKLALLSS 169
Query: 155 CYKAGLSVLEDDI--------------------------------YEINLP-RDFFLYCY 181
Y L VL+ + + NL RD +
Sbjct: 170 SYTYVLPVLDKLLCHFPSDTQNAHAGILLCSEHEPSTVFFTDSSGFSANLTYRDHLQFYM 229
Query: 182 YGGMIFIGQKRFRKALELLHNVVTAPMS-SINAIAVEAYKKYILVSLIHHGQFSSTLPKY 240
Y GM+++ K++ +A L V++AP + S++ I VEAYKK++L +L+ HG+ S +P
Sbjct: 230 YSGMVYMALKKWDQASHCLGIVISAPTANSVSKIMVEAYKKWVLANLLGHGKLFS-VPNL 288
Query: 241 TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYV 275
+ R ++ S+PY+ L + L T +
Sbjct: 289 VAPHVTRVYQSLSKPYISLAEAFEKRDFQRLRTEI 323
>sp|Q7S7G7|CSN3_NEUCR COP9 signalosome complex subunit 3 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-3 PE=1 SV=2
Length = 497
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 106/246 (43%), Gaps = 37/246 (15%)
Query: 46 LDQLDPSKHSLGYLYFLEPCMYC-SITKERAN-TLVPIIARFITSCSAEQIRYVPEKFIN 103
L ++P+ +SL YL LE + T ++A+ +L +A+F A QIR + +
Sbjct: 52 LKHVNPAVYSLSYLMILEFLLQSPGWTSQQAHESLASYMAQFFLQFDARQIRCKGSTWSD 111
Query: 104 VCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVL 163
V K + L A + V + A+ ++ S +T+ H ++L A L ++
Sbjct: 112 VLKEAYSERGLFPASV-AVELVTAALLRLDPSGSIITSHHCNLVELAYNTGNVGALLPLI 170
Query: 164 EDDIY--------------EINLPRDFFL-----------------YCYYGGMIFIGQKR 192
E I +++LP ++ Y + G+ FI ++
Sbjct: 171 EKPIIYMPAKGMSTAQPLCDMSLPPPAYINPDSQLTDALTSAAVLQYDFLCGLCFIERRM 230
Query: 193 FRKALELLHNVVTAPM--SSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK 250
+++A + VT P + I EAY K+ILV L+ G+ TLP+ TS AA++
Sbjct: 231 WQQAFDAFERCVTYPTRDGGCSKIMTEAYNKWILVGLLLTGK-PPTLPETTSQAAKKIFA 289
Query: 251 NFSQPY 256
+PY
Sbjct: 290 TQGKPY 295
>sp|Q9N425|CSN3_CAEEL COP9 signalosome complex subunit 3 OS=Caenorhabditis elegans
GN=csn-3 PE=1 SV=4
Length = 501
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 173 PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQ 232
P+ Y Y G I I KRF AL LL V P S+ ++++KKY+L+SLI G+
Sbjct: 256 PKYVLDYLYNGACILIELKRFEDALFLLEICVGMPAFSVQDQHLDSFKKYVLISLILKGK 315
Query: 233 FSSTLPKYTSSAAQRNLKNFSQPYMEL 259
T + +A R+ K S Y +
Sbjct: 316 VDVT--ENGDKSAIRHFKTKSPEYKQF 340
>sp|Q5S007|LRRK2_HUMAN Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens
GN=LRRK2 PE=1 SV=2
Length = 2527
Score = 38.1 bits (87), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 43 LSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFI 102
+S + LD S++ +G L+P + C P + +F + S Q+ +VPE
Sbjct: 1057 MSCIANLDVSRNDIGPSVVLDPTVKC-----------PTLKQF--NLSYNQLSFVPENLT 1103
Query: 103 NVCKRYKDQVLLLEAPIRGV-GPM-LTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGL 160
+V ++ +Q++L I G+ P+ L ++ + S H+++L FL+ C + + A +
Sbjct: 1104 DVVEKL-EQLILEGNKISGICSPLRLKELKILNLSKNHISSLSENFLEACPKVESFSARM 1162
Query: 161 SVL 163
+ L
Sbjct: 1163 NFL 1165
>sp|C0QB17|RS2_DESAH 30S ribosomal protein S2 OS=Desulfobacterium autotrophicum (strain
ATCC 43914 / DSM 3382 / HRM2) GN=rpsB PE=3 SV=1
Length = 280
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 2 QSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYF 61
Q+I+ +++ + LS+ +D T ++DY K + E +L + + + K+ G ++
Sbjct: 105 QTIKKTISRFEFLSTIENDGT-IEDYPKKERVKMAKERVKLEACIGGISKMKNLPGAIFV 163
Query: 62 LEPCMYCSITKERANTLVPIIARFITSCSAEQIRYV 97
++P KE +PI+A T+C + I YV
Sbjct: 164 IDPKNESIAVKEGKRLGIPIVAVVDTNCDPDDIDYV 199
>sp|A0Q0S0|RS2_CLONN 30S ribosomal protein S2 OS=Clostridium novyi (strain NT) GN=rpsB
PE=3 SV=1
Length = 233
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 35 LRSESTRL---LSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSA 91
LR+E +L L + LD S +LG ++ ++P + E N +P++A T+C
Sbjct: 137 LRNEKEKLEKNLGGIKNLDAS--NLGAIFIVDPRKEKNAIDEAKNLGIPVVAIVDTNCDP 194
Query: 92 EQIRYV 97
++I YV
Sbjct: 195 DEIDYV 200
>sp|A4XM02|RS2_CALS8 30S ribosomal protein S2 OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=rpsB PE=3 SV=1
Length = 258
Score = 35.4 bits (80), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 33 DLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAE 92
+LLR E RLL +L + LY ++P + E +PI+A T+C +
Sbjct: 135 NLLRKEKERLLKYLGGIQNMPRIPDILYIVDPRKERNAVLEARKLGIPIVAIVDTNCDPD 194
Query: 93 QIRYV 97
+I YV
Sbjct: 195 EIDYV 199
>sp|B9MKQ1|RS2_CALBD 30S ribosomal protein S2 OS=Caldicellulosiruptor bescii (strain
ATCC BAA-1888 / DSM 6725 / Z-1320) GN=rpsB PE=3 SV=1
Length = 257
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 33 DLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAE 92
+LLR E RLL +L + LY ++P + E +PI+A T+C +
Sbjct: 135 NLLRKEKERLLKYLGGIQNMPRIPDILYIVDPRKERNAVLEARKLGIPIVAIVDTNCDPD 194
Query: 93 QIRYV 97
+I YV
Sbjct: 195 EIDYV 199
>sp|Q5S006|LRRK2_MOUSE Leucine-rich repeat serine/threonine-protein kinase 2 OS=Mus musculus
GN=Lrrk2 PE=1 SV=2
Length = 2527
Score = 35.0 bits (79), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 49 LDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRY 108
LD S++ +G L+P M C K+ + S Q+ +PE V ++
Sbjct: 1063 LDASRNDIGPTVVLDPAMKCPSLKQ-------------LNLSYNQLSSIPENLAQVVEKL 1109
Query: 109 KDQVLLLEAPIRGV-GPM-LTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVL 163
+Q+LL I G+ P+ L ++ + S H+ +L +FL+ C + + A ++ L
Sbjct: 1110 -EQLLLEGNKISGICSPLSLKELKILNLSKNHIPSLPGDFLEACSKVESFSARMNFL 1165
>sp|P20430|L_TACVF RNA-directed RNA polymerase L OS=Tacaribe virus (strain
Franze-Fernandez) GN=L PE=1 SV=1
Length = 2210
Score = 34.7 bits (78), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 26/118 (22%)
Query: 168 YEINLPRDFFL-YCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVS 226
+E +D FL +C+ G ++ ++ +LL N+V +A + +KY+ V
Sbjct: 20 HEFAHQKDAFLSHCHSGSLL-------QEGFKLLSNLVELESCESHACHLNTCQKYVDVI 72
Query: 227 LIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGK-IVELETYVQTNREKFE 283
L HG TLPK + TGK ++ LET+V+ N E+FE
Sbjct: 73 LSDHGIPCPTLPKVIPDGFKL-----------------TGKTLILLETFVRVNPEEFE 113
>sp|Q9UBM8|MGT4C_HUMAN Alpha-1,3-mannosyl-glycoprotein
4-beta-N-acetylglucosaminyltransferase C OS=Homo sapiens
GN=MGAT4C PE=2 SV=2
Length = 478
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 102 INVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKA 158
+N C D ++LE +R LTAI+K+ +S E + EF +L + K Y +
Sbjct: 210 LNFCANTSDYYVMLEDDVRCSKNFLTAIKKVIASLEGTYWVTLEFSKLGYIGKLYHS 266
>sp|Q4R4A8|MGT4C_MACFA Alpha-1,3-mannosyl-glycoprotein
4-beta-N-acetylglucosaminyltransferase C OS=Macaca
fascicularis GN=MGAT4C PE=2 SV=1
Length = 478
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 102 INVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKA 158
+N C D ++LE +R LTAI+K+ +S E + EF +L + K Y +
Sbjct: 210 LNFCANTSDYYVMLEDDVRCSKNFLTAIKKVIASLEGTYWVTLEFSKLGYIGKLYHS 266
>sp|Q9D306|MGT4C_MOUSE Alpha-1,3-mannosyl-glycoprotein
4-beta-N-acetylglucosaminyltransferase C OS=Mus musculus
GN=Mgat4c PE=2 SV=1
Length = 478
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 102 INVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKA 158
+N C D ++LE +R LTAI+K+ +S E + EF +L + K Y +
Sbjct: 210 LNFCANTSDYYVMLEDDVRCSRNFLTAIKKVIASLEGTYWVTLEFSKLGYIGKLYHS 266
>sp|P12695|ODP2_YEAST Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase complex, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LAT1 PE=1
SV=1
Length = 482
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 124 PMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE------IN--LPRD 175
P IRK ++ + P L ++ C GLS + ++I E IN P +
Sbjct: 331 PNENVIRKFKNVDVSVAVATPTGLLTPIVKNCEAKGLSQISNEIKELVKRARINKLAPEE 390
Query: 176 FFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIA 215
F GG I I A+ + +++ P S+I AIA
Sbjct: 391 F-----QGGTICISNMGMNNAVNMFTSIINPPQSTILAIA 425
>sp|P47719|GYRA_MYCGA DNA gyrase subunit A OS=Mycoplasma gallisepticum (strain R(low /
passage 15 / clone 2)) GN=gyrA PE=3 SV=2
Length = 846
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 20 DITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPC--MYCSITKERANT 77
++ LK+ +K E++L+++ R+ DQLD H G + C + +I E+
Sbjct: 452 ELAKLKELIKDLEEILQNKERRIKIISDQLDEIDHKFGDERRTKICYGLNSTIDNEQ--- 508
Query: 78 LVPIIARFITSCSAEQIRYVP 98
L+P+ IT S ++ +P
Sbjct: 509 LIPVETVVITRSSKGYLKRIP 529
>sp|Q9UT51|CSN3_SCHPO COP9 signalosome complex subunit 3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn3 PE=3 SV=2
Length = 338
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 7/156 (4%)
Query: 139 LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFL-YCYYGGMIFIGQKRFRKAL 197
++ +H +L+ L Y L D ++P L YC Y +G A
Sbjct: 80 ISVMHVCYLKELLRQGQYATSLKSFNDLEVSKHIPGSILLQYCMYAAYHCLGNNDLDSAK 139
Query: 198 ELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYM 257
+++ P +++ + EAY ++L+ +I G+ L TSS LK PY
Sbjct: 140 VWYFSILYIPTTTLTSFHEEAYYSFLLLYIITTGK-KFQLDSATSSNV-LPLKRHMVPYE 197
Query: 258 ELVNTYNTGKIVELETYVQTNREKF---ESVSYLLF 290
E ++ Y + L T ++ + +F S +++LF
Sbjct: 198 EFLDAY-LKDVNTLRTVIKEHWSRFLKDNSTAFILF 232
>sp|Q5WFS8|RS2_BACSK 30S ribosomal protein S2 OS=Bacillus clausii (strain KSM-K16)
GN=rpsB PE=3 SV=1
Length = 242
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 2 QSIENLVTQIQGLSSNASDITALKDYLKAAED-LLRSESTRLLSFLDQLDPSKHSLGYLY 60
++I+ +T+++ L D T D L E LL+ E RL FL + L+
Sbjct: 105 ETIQKRITRLKNLEKMQEDGTF--DVLPKKEVILLKKEMDRLEKFLGGIKDMNGVPDALF 162
Query: 61 FLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYV 97
++P E +PI+A T+C ++I YV
Sbjct: 163 VIDPRKERIAIAEAHKLNIPIVAIVDTNCDPDEIDYV 199
>sp|Q6XQI4|L_JUNIN RNA-directed RNA polymerase L OS=Junin arenavirus GN=L PE=3 SV=2
Length = 2210
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 24/116 (20%)
Query: 169 EINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLI 228
E+ RD FL ++ + + + +LL ++V +A + + +K++ V L
Sbjct: 21 ELAYQRDIFLSQHHPSSLLL------EGFKLLSSLVELESCEAHACQINSDQKFVDVILS 74
Query: 229 HHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGK-IVELETYVQTNREKFE 283
HG TLPK + TGK ++ LET+V+ N ++FE
Sbjct: 75 DHGILCPTLPKVIPDGFKL-----------------TGKTLILLETFVRVNPDEFE 113
>sp|B0K1P9|RS2_THEPX 30S ribosomal protein S2 OS=Thermoanaerobacter sp. (strain X514)
GN=rpsB PE=3 SV=1
Length = 235
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 20 DITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLV 79
D+ K+ +K LR E RL FL ++ + L+ ++P E + +
Sbjct: 127 DVLPKKEVIK-----LRKEKERLQKFLGGIENMQSLPSALFIVDPKKEAIAVAEARSLEI 181
Query: 80 PIIARFITSCSAEQIRY 96
PI+A T+C E I Y
Sbjct: 182 PIVAIVDTNCDPELIDY 198
>sp|B0K9R6|RS2_THEP3 30S ribosomal protein S2 OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=rpsB PE=3 SV=1
Length = 235
Score = 31.2 bits (69), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 20 DITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLV 79
D+ K+ +K LR E RL FL ++ + L+ ++P E + +
Sbjct: 127 DVLPKKEVIK-----LRKEKERLQKFLGGIENMESLPSALFIVDPKKEAIAVAEARSLEI 181
Query: 80 PIIARFITSCSAEQIRY 96
PI+A T+C E I Y
Sbjct: 182 PIVAIVDTNCDPELIDY 198
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,063,775
Number of Sequences: 539616
Number of extensions: 3700989
Number of successful extensions: 10616
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 10563
Number of HSP's gapped (non-prelim): 38
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)