Query 022902
Match_columns 290
No_of_seqs 127 out of 222
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:59:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2582 COP9 signalosome, subu 100.0 2.4E-64 5.2E-69 465.4 21.0 284 4-289 5-294 (422)
2 KOG2581 26S proteasome regulat 99.9 3.6E-24 7.7E-29 201.2 17.8 231 48-289 119-354 (493)
3 COG5600 Transcription-associat 97.7 0.00084 1.8E-08 64.0 13.8 132 142-286 179-321 (413)
4 KOG2688 Transcription-associat 97.1 0.0011 2.4E-08 63.9 6.3 133 144-287 167-305 (394)
5 TIGR02795 tol_pal_ybgF tol-pal 96.3 0.027 5.9E-07 43.4 8.4 94 115-209 15-109 (119)
6 PF09976 TPR_21: Tetratricopep 96.2 0.018 3.8E-07 47.6 7.1 86 114-204 60-145 (145)
7 PF13432 TPR_16: Tetratricopep 96.0 0.015 3.3E-07 40.9 4.8 60 146-208 3-63 (65)
8 PF12895 Apc3: Anaphase-promot 95.9 0.013 2.8E-07 43.7 4.3 78 120-203 7-84 (84)
9 TIGR02552 LcrH_SycD type III s 95.7 0.11 2.5E-06 41.3 9.6 89 114-209 29-118 (135)
10 PF13371 TPR_9: Tetratricopept 95.7 0.021 4.5E-07 40.9 4.6 60 147-209 2-62 (73)
11 PF07719 TPR_2: Tetratricopept 95.6 0.025 5.5E-07 34.3 4.1 31 178-208 2-33 (34)
12 PRK15359 type III secretion sy 95.5 0.13 2.9E-06 42.5 9.4 91 112-209 34-125 (144)
13 PF14938 SNAP: Soluble NSF att 95.2 0.42 9.2E-06 44.0 12.6 155 117-281 89-263 (282)
14 PF00515 TPR_1: Tetratricopept 95.1 0.037 7.9E-07 33.9 3.6 31 178-208 2-33 (34)
15 cd00189 TPR Tetratricopeptide 95.0 0.18 3.8E-06 35.2 7.8 84 115-205 13-96 (100)
16 PF10255 Paf67: RNA polymerase 94.9 0.25 5.4E-06 48.3 10.5 129 145-283 127-272 (404)
17 KOG1463 26S proteasome regulat 94.8 2.8 6.1E-05 40.1 16.9 160 122-286 151-318 (411)
18 PF13414 TPR_11: TPR repeat; P 94.8 0.059 1.3E-06 38.1 4.6 63 142-207 5-69 (69)
19 PF13174 TPR_6: Tetratricopept 94.7 0.055 1.2E-06 32.5 3.7 29 180-208 3-32 (33)
20 PLN03088 SGT1, suppressor of 94.3 0.34 7.4E-06 46.3 9.9 91 114-211 14-105 (356)
21 PF09295 ChAPs: ChAPs (Chs5p-A 93.7 0.3 6.5E-06 47.6 8.3 85 112-203 210-294 (395)
22 PF13181 TPR_8: Tetratricopept 93.6 0.12 2.6E-06 31.3 3.7 28 178-205 2-29 (34)
23 TIGR03302 OM_YfiO outer membra 93.6 0.75 1.6E-05 40.4 10.1 94 115-209 46-148 (235)
24 PRK10803 tol-pal system protei 93.1 0.8 1.7E-05 42.1 9.8 95 116-211 157-252 (263)
25 PF13424 TPR_12: Tetratricopep 92.9 0.15 3.2E-06 37.0 3.8 65 141-205 6-74 (78)
26 TIGR02521 type_IV_pilW type IV 92.8 2.9 6.3E-05 35.0 12.3 85 116-207 45-129 (234)
27 PRK10747 putative protoheme IX 92.4 1.1 2.5E-05 43.2 10.3 89 121-209 244-361 (398)
28 PRK10370 formate-dependent nit 92.1 1.5 3.3E-05 38.3 9.8 100 112-218 83-186 (198)
29 cd05804 StaR_like StaR_like; a 91.8 3.7 8.1E-05 38.1 12.7 116 112-234 124-242 (355)
30 PF13176 TPR_7: Tetratricopept 91.7 0.26 5.7E-06 30.9 3.4 24 181-204 3-26 (36)
31 PRK12370 invasion protein regu 91.4 1.2 2.6E-05 45.0 9.5 84 119-209 321-405 (553)
32 cd00189 TPR Tetratricopeptide 91.3 1.6 3.5E-05 30.1 7.7 63 144-209 4-67 (100)
33 smart00028 TPR Tetratricopepti 90.8 0.62 1.4E-05 25.9 4.2 27 179-205 3-29 (34)
34 TIGR00990 3a0801s09 mitochondr 90.8 3.9 8.5E-05 41.7 12.7 86 116-208 413-499 (615)
35 PRK11788 tetratricopeptide rep 90.7 2.6 5.7E-05 39.6 10.7 65 141-205 142-208 (389)
36 TIGR00540 hemY_coli hemY prote 90.7 8.4 0.00018 37.2 14.3 106 111-222 127-235 (409)
37 TIGR02521 type_IV_pilW type IV 90.5 3.6 7.8E-05 34.4 10.4 93 111-208 74-167 (234)
38 PRK11788 tetratricopeptide rep 90.4 16 0.00034 34.3 18.4 92 113-208 152-246 (389)
39 PF12688 TPR_5: Tetratrico pep 90.3 1.5 3.2E-05 35.6 7.3 93 110-205 9-103 (120)
40 PF13424 TPR_12: Tetratricopep 89.9 0.55 1.2E-05 33.9 4.2 32 175-206 3-34 (78)
41 TIGR00540 hemY_coli hemY prote 89.7 20 0.00044 34.6 16.8 94 111-208 272-369 (409)
42 PRK15174 Vi polysaccharide exp 89.7 1.9 4.2E-05 44.6 9.4 78 121-205 269-346 (656)
43 PF14853 Fis1_TPR_C: Fis1 C-te 89.6 0.64 1.4E-05 32.3 4.0 32 178-209 2-34 (53)
44 KOG1464 COP9 signalosome, subu 89.6 0.71 1.5E-05 43.1 5.4 98 183-285 237-336 (440)
45 PRK11189 lipoprotein NlpI; Pro 89.5 14 0.0003 34.1 14.2 33 175-207 234-266 (296)
46 TIGR02552 LcrH_SycD type III s 89.3 2.3 4.9E-05 33.7 7.8 77 125-208 6-83 (135)
47 PRK15359 type III secretion sy 89.1 1.2 2.5E-05 36.8 6.1 64 143-209 27-91 (144)
48 PF13429 TPR_15: Tetratricopep 89.0 0.68 1.5E-05 42.0 5.0 94 109-209 153-247 (280)
49 TIGR02917 PEP_TPR_lipo putativ 88.9 3.9 8.4E-05 41.8 10.9 95 108-209 131-226 (899)
50 TIGR03302 OM_YfiO outer membra 88.9 1.2 2.6E-05 39.1 6.3 74 136-209 29-103 (235)
51 PF14559 TPR_19: Tetratricopep 88.8 0.3 6.6E-06 34.2 2.0 55 151-208 2-57 (68)
52 KOG2908 26S proteasome regulat 88.4 12 0.00026 35.8 12.8 198 74-280 53-261 (380)
53 KOG1840 Kinesin light chain [C 87.3 17 0.00036 36.8 13.9 162 101-265 240-421 (508)
54 COG3071 HemY Uncharacterized e 87.3 4.5 9.7E-05 39.3 9.4 101 94-208 259-360 (400)
55 PRK15179 Vi polysaccharide bio 87.2 4.5 9.7E-05 42.4 10.2 127 72-205 45-182 (694)
56 PRK02603 photosystem I assembl 87.0 1.8 3.8E-05 36.5 6.0 68 142-209 37-105 (172)
57 PF12569 NARP1: NMDA receptor- 86.0 14 0.0003 37.4 12.6 154 50-206 68-257 (517)
58 CHL00033 ycf3 photosystem I as 86.0 2.5 5.4E-05 35.3 6.4 68 139-206 34-101 (168)
59 PF13429 TPR_15: Tetratricopep 85.9 0.79 1.7E-05 41.6 3.5 90 114-209 89-179 (280)
60 PLN03081 pentatricopeptide (PP 85.8 44 0.00096 34.6 16.7 129 142-277 261-416 (697)
61 PF13428 TPR_14: Tetratricopep 85.7 1.3 2.8E-05 28.8 3.5 31 180-210 4-35 (44)
62 TIGR02917 PEP_TPR_lipo putativ 85.7 26 0.00057 35.7 14.9 92 112-209 66-158 (899)
63 CHL00033 ycf3 photosystem I as 85.4 5.5 0.00012 33.2 8.2 90 114-204 47-140 (168)
64 PF01399 PCI: PCI domain; Int 85.3 1.2 2.5E-05 33.9 3.7 34 254-287 1-35 (105)
65 TIGR02795 tol_pal_ybgF tol-pal 85.0 1.9 4E-05 32.9 4.8 64 146-209 8-72 (119)
66 PRK09782 bacteriophage N4 rece 84.8 4.4 9.6E-05 44.1 9.0 90 113-209 620-710 (987)
67 PF13374 TPR_10: Tetratricopep 84.7 1.8 3.8E-05 26.9 3.8 28 178-205 3-30 (42)
68 PF13414 TPR_11: TPR repeat; P 83.8 1.8 3.9E-05 30.3 3.9 32 178-209 4-36 (69)
69 PF09986 DUF2225: Uncharacteri 82.9 6.1 0.00013 35.2 7.8 39 173-211 161-199 (214)
70 PF14938 SNAP: Soluble NSF att 82.8 5.6 0.00012 36.5 7.7 129 74-209 92-229 (282)
71 PRK02603 photosystem I assembl 82.5 7.5 0.00016 32.6 7.9 91 115-209 48-153 (172)
72 PRK10049 pgaA outer membrane p 82.2 8 0.00017 40.7 9.5 94 110-210 367-461 (765)
73 TIGR00990 3a0801s09 mitochondr 81.7 8.1 0.00017 39.4 9.1 88 114-208 343-431 (615)
74 PRK10747 putative protoheme IX 81.5 52 0.0011 31.7 14.4 89 112-206 128-216 (398)
75 PLN03077 Protein ECB2; Provisi 81.1 12 0.00026 39.8 10.5 157 101-277 557-716 (857)
76 PF12895 Apc3: Anaphase-promot 81.0 1.4 3.1E-05 32.4 2.6 49 153-202 2-50 (84)
77 PRK15331 chaperone protein Sic 80.8 2.3 5E-05 36.5 4.0 61 145-209 76-137 (165)
78 PRK11189 lipoprotein NlpI; Pro 80.5 3.5 7.6E-05 38.1 5.6 92 112-210 74-166 (296)
79 PRK10049 pgaA outer membrane p 80.3 9.4 0.0002 40.3 9.2 99 110-209 280-392 (765)
80 KOG0543 FKBP-type peptidyl-pro 80.1 4.6 0.0001 39.3 6.2 70 137-209 254-324 (397)
81 PLN03077 Protein ECB2; Provisi 80.0 11 0.00023 40.1 9.7 70 144-220 528-600 (857)
82 PRK14574 hmsH outer membrane p 80.0 8.1 0.00017 41.3 8.6 98 112-209 337-449 (822)
83 PRK15363 pathogenicity island 79.4 3.1 6.6E-05 35.5 4.3 58 149-209 44-102 (157)
84 PRK14574 hmsH outer membrane p 79.0 4.5 9.7E-05 43.2 6.3 84 113-205 79-164 (822)
85 PRK15179 Vi polysaccharide bio 78.9 28 0.00061 36.5 12.1 86 116-208 66-152 (694)
86 PRK10803 tol-pal system protei 78.7 3.1 6.7E-05 38.3 4.5 61 149-209 152-213 (263)
87 PF10602 RPN7: 26S proteasome 77.6 8.8 0.00019 33.0 6.8 124 75-206 16-142 (177)
88 PF09976 TPR_21: Tetratricopep 77.6 32 0.00069 27.9 9.9 105 93-203 7-111 (145)
89 KOG1840 Kinesin light chain [C 77.5 86 0.0019 31.8 17.0 148 101-283 324-481 (508)
90 cd05804 StaR_like StaR_like; a 77.3 34 0.00074 31.6 11.2 81 125-208 99-180 (355)
91 PLN03081 pentatricopeptide (PP 76.5 28 0.00061 36.1 11.3 93 100-205 327-419 (697)
92 PLN03098 LPA1 LOW PSII ACCUMUL 76.3 5.4 0.00012 39.6 5.6 67 139-206 74-141 (453)
93 PF12569 NARP1: NMDA receptor- 75.9 86 0.0019 31.8 14.2 138 115-261 241-390 (517)
94 PF13432 TPR_16: Tetratricopep 75.6 3.9 8.4E-05 28.2 3.4 28 181-208 1-29 (65)
95 PRK15174 Vi polysaccharide exp 75.5 69 0.0015 33.2 13.8 85 113-205 121-205 (656)
96 PRK15363 pathogenicity island 74.1 7.9 0.00017 33.0 5.4 76 124-205 56-131 (157)
97 PRK12370 invasion protein regu 73.9 16 0.00034 37.0 8.5 84 115-205 351-434 (553)
98 PLN03088 SGT1, suppressor of 73.8 5 0.00011 38.4 4.6 60 147-209 9-69 (356)
99 KOG0686 COP9 signalosome, subu 73.8 21 0.00046 35.1 8.7 60 173-243 153-212 (466)
100 PRK09782 bacteriophage N4 rece 71.2 26 0.00057 38.3 9.8 83 116-209 58-141 (987)
101 PRK10370 formate-dependent nit 71.1 26 0.00057 30.5 8.2 83 121-209 58-143 (198)
102 PRK11447 cellulose synthase su 70.6 14 0.0003 40.9 7.7 91 111-208 612-703 (1157)
103 COG3063 PilF Tfp pilus assembl 70.5 24 0.00052 32.2 7.8 87 116-209 49-135 (250)
104 PF13525 YfiO: Outer membrane 70.3 43 0.00093 29.0 9.4 95 114-209 17-123 (203)
105 PRK11447 cellulose synthase su 69.4 58 0.0013 36.1 12.2 31 179-209 605-636 (1157)
106 KOG1126 DNA-binding cell divis 69.2 10 0.00022 39.1 5.7 105 95-210 418-523 (638)
107 KOG4162 Predicted calmodulin-b 68.9 53 0.0011 34.7 10.8 122 77-205 651-782 (799)
108 KOG0547 Translocase of outer m 67.5 42 0.00091 33.9 9.4 63 143-208 431-494 (606)
109 PRK10153 DNA-binding transcrip 67.2 77 0.0017 32.1 11.6 64 141-208 421-485 (517)
110 COG5159 RPN6 26S proteasome re 67.0 1.2E+02 0.0026 28.9 15.9 162 119-285 145-315 (421)
111 KOG2047 mRNA splicing factor [ 66.9 42 0.00091 35.1 9.5 113 115-227 360-482 (835)
112 PLN03218 maturation of RBCL 1; 66.9 44 0.00095 36.9 10.4 77 142-220 651-730 (1060)
113 KOG3060 Uncharacterized conser 66.0 1E+02 0.0022 28.7 10.9 32 178-209 155-187 (289)
114 PF13512 TPR_18: Tetratricopep 65.6 36 0.00078 28.5 7.5 93 116-209 24-132 (142)
115 PRK10866 outer membrane biogen 65.5 11 0.00023 34.1 4.7 65 145-209 37-102 (243)
116 PF10037 MRP-S27: Mitochondria 64.2 15 0.00032 36.4 5.7 83 137-222 100-186 (429)
117 PF14559 TPR_19: Tetratricopep 62.8 9.9 0.00022 26.2 3.2 51 115-169 4-54 (68)
118 PLN02789 farnesyltranstransfer 62.7 42 0.00091 31.7 8.3 33 177-209 142-175 (320)
119 PLN03218 maturation of RBCL 1; 62.5 2.5E+02 0.0055 31.1 17.4 111 101-221 582-696 (1060)
120 PRK11906 transcriptional regul 62.2 42 0.00091 33.5 8.4 82 121-209 323-405 (458)
121 PF13525 YfiO: Outer membrane 60.9 14 0.0003 32.2 4.4 63 147-209 12-75 (203)
122 PF07721 TPR_4: Tetratricopept 59.7 12 0.00027 21.4 2.7 23 179-201 3-25 (26)
123 COG2976 Uncharacterized protei 59.0 53 0.0012 29.2 7.6 91 116-212 103-195 (207)
124 KOG2076 RNA polymerase III tra 58.8 44 0.00095 35.8 8.2 65 143-209 417-482 (895)
125 PF09295 ChAPs: ChAPs (Chs5p-A 58.6 54 0.0012 32.1 8.5 64 143-209 203-267 (395)
126 KOG1126 DNA-binding cell divis 55.1 29 0.00063 35.8 6.1 76 144-222 527-604 (638)
127 PRK10866 outer membrane biogen 52.4 1.4E+02 0.0031 26.8 9.7 107 116-226 46-171 (243)
128 PF13371 TPR_9: Tetratricopept 49.7 15 0.00033 25.6 2.4 25 184-208 2-27 (73)
129 PF10345 Cohesin_load: Cohesin 48.2 3.2E+02 0.007 28.0 15.2 151 48-205 52-207 (608)
130 PF04733 Coatomer_E: Coatomer 48.1 1.4E+02 0.0031 27.7 9.2 90 114-208 143-233 (290)
131 COG3071 HemY Uncharacterized e 47.7 71 0.0015 31.2 7.2 84 114-205 306-389 (400)
132 KOG4626 O-linked N-acetylgluco 47.2 91 0.002 32.7 8.1 51 175-225 250-315 (966)
133 COG4783 Putative Zn-dependent 46.5 93 0.002 31.2 7.9 86 108-200 346-431 (484)
134 PF03704 BTAD: Bacterial trans 46.4 60 0.0013 26.0 5.8 65 97-165 57-121 (146)
135 PF07720 TPR_3: Tetratricopept 46.2 50 0.0011 20.8 4.1 25 177-201 1-25 (36)
136 COG4105 ComL DNA uptake lipopr 45.9 1.4E+02 0.0031 27.4 8.5 54 174-227 164-222 (254)
137 PRK15331 chaperone protein Sic 44.6 2E+02 0.0044 24.7 8.9 54 148-205 45-99 (165)
138 PLN03098 LPA1 LOW PSII ACCUMUL 44.1 51 0.0011 32.9 5.7 36 174-209 72-108 (453)
139 KOG3364 Membrane protein invol 44.1 27 0.0006 29.3 3.3 36 173-208 67-103 (149)
140 KOG1125 TPR repeat-containing 44.0 32 0.0007 35.1 4.4 40 183-222 436-490 (579)
141 PF09613 HrpB1_HrpK: Bacterial 42.5 52 0.0011 28.2 4.8 31 179-209 46-77 (160)
142 PRK13916 plasmid segregation p 40.6 68 0.0015 24.5 4.6 49 185-241 9-57 (97)
143 PF06552 TOM20_plant: Plant sp 40.2 57 0.0012 28.6 4.8 37 191-227 94-131 (186)
144 PF10300 DUF3808: Protein of u 40.2 43 0.00093 33.3 4.7 80 122-205 253-333 (468)
145 COG1729 Uncharacterized protei 39.1 31 0.00068 31.8 3.2 105 150-275 151-257 (262)
146 PF10300 DUF3808: Protein of u 39.0 71 0.0015 31.8 6.0 31 175-205 265-295 (468)
147 PF11887 DUF3407: Protein of u 38.9 1.6E+02 0.0035 27.0 7.9 112 22-134 20-140 (267)
148 TIGR02561 HrpB1_HrpK type III 38.5 57 0.0012 27.7 4.4 28 181-208 48-76 (153)
149 PF13512 TPR_18: Tetratricopep 38.0 62 0.0013 27.1 4.6 61 147-209 17-80 (142)
150 PF12862 Apc5: Anaphase-promot 37.7 71 0.0015 24.1 4.6 60 147-206 5-70 (94)
151 KOG1155 Anaphase-promoting com 37.2 4.6E+02 0.01 26.6 16.2 111 118-234 346-503 (559)
152 COG2956 Predicted N-acetylgluc 37.0 2.9E+02 0.0062 26.8 9.2 50 116-165 83-132 (389)
153 KOG0547 Translocase of outer m 36.9 53 0.0011 33.3 4.5 37 180-216 397-434 (606)
154 KOG2140 Uncharacterized conser 36.8 3.8E+02 0.0083 27.6 10.5 50 50-100 205-258 (739)
155 KOG1585 Protein required for f 35.1 3.8E+02 0.0082 25.0 11.7 96 173-277 144-252 (308)
156 PF13431 TPR_17: Tetratricopep 34.4 29 0.00063 21.3 1.6 21 177-197 13-33 (34)
157 KOG1174 Anaphase-promoting com 33.8 1.1E+02 0.0023 30.6 6.0 67 139-209 437-504 (564)
158 KOG2376 Signal recognition par 33.8 1.1E+02 0.0023 31.7 6.2 64 142-205 112-203 (652)
159 KOG1156 N-terminal acetyltrans 33.3 1.1E+02 0.0023 32.0 6.1 124 150-281 17-172 (700)
160 COG1729 Uncharacterized protei 32.1 3E+02 0.0065 25.5 8.4 98 121-220 160-259 (262)
161 PF12070 DUF3550: Protein of u 31.9 3.5E+02 0.0077 27.5 9.5 99 176-287 70-180 (513)
162 cd03562 CID CID (CTD-Interacti 31.9 2.4E+02 0.0052 21.8 10.2 69 1-70 1-69 (114)
163 PF13041 PPR_2: PPR repeat fam 31.1 74 0.0016 20.7 3.3 33 187-219 13-48 (50)
164 TIGR03504 FimV_Cterm FimV C-te 30.4 72 0.0016 21.1 3.1 25 182-206 4-28 (44)
165 PF02259 FAT: FAT domain; Int 30.3 4.2E+02 0.0091 24.1 17.8 87 122-208 128-216 (352)
166 KOG3081 Vesicle coat complex C 30.1 95 0.0021 29.0 4.8 78 184-279 214-296 (299)
167 KOG4507 Uncharacterized conser 28.5 1.3E+02 0.0029 31.2 5.9 102 115-222 620-727 (886)
168 PF13812 PPR_3: Pentatricopept 27.7 45 0.00097 19.3 1.6 23 143-165 4-26 (34)
169 COG2956 Predicted N-acetylgluc 26.9 92 0.002 30.0 4.2 91 129-222 167-262 (389)
170 KOG0553 TPR repeat-containing 26.8 1.1E+02 0.0025 28.8 4.7 73 150-225 91-178 (304)
171 KOG0495 HAT repeat protein [RN 26.2 2.2E+02 0.0048 30.1 7.0 96 108-207 725-848 (913)
172 KOG2003 TPR repeat-containing 25.3 42 0.00091 33.7 1.7 90 184-277 244-334 (840)
173 KOG3677 RNA polymerase I-assoc 25.1 55 0.0012 32.5 2.4 59 146-206 241-301 (525)
174 PF00191 Annexin: Annexin; In 24.6 1.4E+02 0.003 20.6 3.9 40 246-285 7-46 (66)
175 PF10345 Cohesin_load: Cohesin 24.5 7.7E+02 0.017 25.2 13.5 63 145-208 105-170 (608)
176 KOG1173 Anaphase-promoting com 24.5 2.6E+02 0.0057 28.8 7.1 106 121-232 433-542 (611)
177 smart00671 SEL1 Sel1-like repe 24.4 41 0.00089 19.9 1.0 17 189-205 17-33 (36)
178 PF05843 Suf: Suppressor of fo 23.8 5.6E+02 0.012 23.3 10.8 67 153-226 49-117 (280)
179 PRK14720 transcript cleavage f 22.6 96 0.0021 33.7 3.9 91 126-224 20-110 (906)
180 KOG2460 Signal recognition par 22.6 96 0.0021 31.6 3.6 27 180-206 425-451 (593)
181 PF08311 Mad3_BUB1_I: Mad3/BUB 22.5 4.1E+02 0.0089 21.3 7.4 76 122-204 46-126 (126)
182 KOG0548 Molecular co-chaperone 22.3 6.8E+02 0.015 25.6 9.5 99 115-223 371-470 (539)
183 cd01493 APPBP1_RUB Ubiquitin a 21.8 2.8E+02 0.0061 27.4 6.7 78 190-277 247-347 (425)
184 KOG1128 Uncharacterized conser 21.7 1.3E+02 0.0028 31.9 4.4 33 177-209 519-552 (777)
185 PF14561 TPR_20: Tetratricopep 21.6 2.7E+02 0.0059 21.0 5.3 45 177-221 22-70 (90)
186 PRK10941 hypothetical protein; 21.4 1.6E+02 0.0035 27.2 4.7 81 137-220 178-262 (269)
187 PF05327 RRN3: RNA polymerase 21.3 8.8E+02 0.019 24.7 10.8 40 121-160 159-198 (563)
188 COG4783 Putative Zn-dependent 21.2 1.5E+02 0.0033 29.8 4.7 60 150-212 316-376 (484)
189 PF01535 PPR: PPR repeat; Int 21.1 79 0.0017 17.7 1.8 18 186-203 9-26 (31)
190 KOG2076 RNA polymerase III tra 20.6 1.1E+03 0.024 25.7 18.2 109 99-209 277-446 (895)
191 PF02184 HAT: HAT (Half-A-TPR) 20.6 88 0.0019 19.4 1.9 18 191-208 1-19 (32)
192 KOG1127 TPR repeat-containing 20.0 4.4E+02 0.0096 29.3 8.0 79 122-207 582-660 (1238)
No 1
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-64 Score=465.40 Aligned_cols=284 Identities=38% Similarity=0.611 Sum_probs=276.0
Q ss_pred HHHHHHHHHhhcCChhcHHHHHHHHHHhHHHHHhhhhhhhhhhhhcCcchhHHHHHHHHHHhhhcccchhhhhhHHHHHH
Q 022902 4 IENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIA 83 (290)
Q Consensus 4 l~~~~~~i~~~~~s~~~~~~L~~~l~~~~~~l~~~~~~~~~~L~~ldp~~~sl~~L~vL~a~~~~~~~~~~~~~l~~~v~ 83 (290)
+++.+++++++++++ ++++|++.+.++.+.|++++++++++|.+|||.+||+||+|++.+++..+.++.+++++++++.
T Consensus 5 l~a~i~~~~~~~~~~-~~~eL~~~i~~~~ell~k~~~~~~~~L~~ld~~~hSlgml~~l~~~f~~~~~~~~~~~li~~~~ 83 (422)
T KOG2582|consen 5 LEAAINELCSLSHSS-NVGELAELIVKSKELLAKNSSDLDAVLLHLDPQVHSLGMLAVLKVKFHTPSANPDPETLIELLN 83 (422)
T ss_pred HHHHHHHHHhhhcCC-cHHHHHHHHHhhHHHHHhCcchHHHHHHhcCccccchhhhhhhhccccCcccCCCHHHHHHHHH
Confidence 688999999999999 9999999999999999999999999999999999999999999999988775558899999999
Q ss_pred HHHhcCChhhhhhhhHhHHHHHHHHHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcc
Q 022902 84 RFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVL 163 (290)
Q Consensus 84 ~fl~~f~~~Qlr~a~~~~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl 163 (290)
+|+.++|.+|+|+++..|..+|+.+++.+.+.++|.+|++++.+|+.++.++..+||++|++++++||++|+|..++|.+
T Consensus 84 ~FV~~~n~eqlr~as~~f~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~l 163 (422)
T KOG2582|consen 84 DFVDENNGEQLRLASEIFFPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHADLLQLCLEAKDYASVLPYL 163 (422)
T ss_pred HHHHhcChHHHhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHHHHHHHHHHhhcccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc------CCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHhcCCCCCCC
Q 022902 164 EDDIYEI------NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTL 237 (290)
Q Consensus 164 ~~~i~~i------~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~l 237 (290)
|.+|.++ .+++++|.|+|||||||+++|||++|+.||++||++|++++++|+.||||||+||+||+.||+. .+
T Consensus 164 d~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~Pa~~vs~~hlEaYkkylLvsLI~~GK~~-ql 242 (422)
T KOG2582|consen 164 DDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTTPAMAVSHIHLEAYKKYLLVSLILTGKVF-QL 242 (422)
T ss_pred chhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcCcee-ec
Confidence 9999999 4599999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCCCHHHHHhhhhcchhHHHHHHHhcCCChHHHHHHHHHhHHhhhcccccc
Q 022902 238 PKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESVSYLL 289 (290)
Q Consensus 238 Pk~~s~~~~r~~k~~~~pY~~la~af~~~~~~~l~~~~~~~~~~f~~D~N~~ 289 (290)
||+||+.+.|.+|....||.+|+++|.++...+|+.+|.+|++.|.+|||+-
T Consensus 243 ~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~ 294 (422)
T KOG2582|consen 243 PKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTG 294 (422)
T ss_pred cccchhhhHHhcccCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHH
Confidence 9999999999999999999999999999999999999999999999999974
No 2
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.6e-24 Score=201.21 Aligned_cols=231 Identities=17% Similarity=0.224 Sum_probs=181.8
Q ss_pred hcCcchhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHHhcCChhhhhhhhHhH---HHHHHHHHHhHhhhccccccHHH
Q 022902 48 QLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKF---INVCKRYKDQVLLLEAPIRGVGP 124 (290)
Q Consensus 48 ~ldp~~~sl~~L~vL~a~~~~~~~~~~~~~l~~~v~~fl~~f~~~Qlr~a~~~~---~~l~~~~~~~~~~~~~p~~~i~~ 124 (290)
.+-|++..+.||.++..+++++..+ +...+.+....=+..+|+|.+++...+. ..++.+....+...+.- --..
T Consensus 119 ~~~~Ei~aY~~lLv~Lfl~d~K~~k-ea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~--l~~~ 195 (493)
T KOG2581|consen 119 PLPAEIEAYLYLLVLLFLIDQKEYK-EADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSF--LHAL 195 (493)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHH--HHHH
Confidence 3455777788888888888766544 5666777777778999999999877753 33333333332222211 2355
Q ss_pred HHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhccccccc-ccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHh
Q 022902 125 MLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIY-EINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNV 203 (290)
Q Consensus 125 L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~-~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~a 203 (290)
|++|.+|+|..+ -..+.++|+|++|..+.|++|..++.+..+ +-.+.++..+|+||-|.|.+.+.+|+.|.++|.+|
T Consensus 196 lrtAtLrhd~e~--qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa 273 (493)
T KOG2581|consen 196 LRTATLRHDEEG--QAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQA 273 (493)
T ss_pred HHHhhhcCcchh--HHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHH
Confidence 899999999766 355669999999999999999999999754 33457799999999999999999999999999999
Q ss_pred hc-cCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhhhcchhHHHHHHHhcCCChHHHHHHHHHhHHhh
Q 022902 204 VT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKF 282 (290)
Q Consensus 204 is-~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k~~~~pY~~la~af~~~~~~~l~~~~~~~~~~f 282 (290)
++ +|..++-++-...-|..++|+|+ .|++| ++.-++.|... ....||++|++|++.||+++|..+++++.+.|
T Consensus 274 ~rkapq~~alGf~q~v~k~~ivv~ll-~geiP-ers~F~Qp~~~----ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f 347 (493)
T KOG2581|consen 274 LRKAPQHAALGFRQQVNKLMIVVELL-LGEIP-ERSVFRQPGMR----KSLRPYFKLTQAVRLGDLKKFNETLEQFKDKF 347 (493)
T ss_pred HHhCcchhhhhHHHHHHHHHHHHHHH-cCCCc-chhhhcCccHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 98 99977777777766666666655 59999 87665555544 46799999999999999999999999999999
Q ss_pred hcccccc
Q 022902 283 ESVSYLL 289 (290)
Q Consensus 283 ~~D~N~~ 289 (290)
+.||++.
T Consensus 348 ~~D~ty~ 354 (493)
T KOG2581|consen 348 QADGTYT 354 (493)
T ss_pred hhCCcch
Confidence 9999975
No 3
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=97.72 E-value=0.00084 Score=64.00 Aligned_cols=132 Identities=22% Similarity=0.325 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHccCchhhhhcccc-------cccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc---c
Q 022902 142 LHPEFLQLCLLAKCYKAGLSVLED-------DIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS---S 210 (290)
Q Consensus 142 ~H~~ll~lcL~ak~y~~Al~vl~~-------~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~---~ 210 (290)
+-+.+++++++=++.+-+..++.. ||.+. +-.++..|+||.|.+|.-+.++.+|..-|..|.. .|-- -
T Consensus 179 iaNlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~-~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~l~~~n 257 (413)
T COG5600 179 IANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEY-QKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPWLITRN 257 (413)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHhcccccccccchh-hhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChhhhhcc
Confidence 447788888888888777655533 23221 2468899999999999999999999999999886 7761 1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhhhcchhHHHHHHHhcCCChHHHHHHHHHhHHhhhccc
Q 022902 211 INAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESVS 286 (290)
Q Consensus 211 ~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k~~~~pY~~la~af~~~~~~~l~~~~~~~~~~f~~D~ 286 (290)
.-.|+. -||-.+||.+|..| . -+.. ..++. |..|.-|..++++||.+.++..+++++.-|.+-|
T Consensus 258 ~~rIl~----~~ipt~Llv~~~~P-t-----k~~L-~r~~~-~s~~~~LvkavrsGni~~~~~~l~~ner~~~~~~ 321 (413)
T COG5600 258 RKRILP----YYIPTSLLVNKFPP-T-----KDLL-ERFKR-CSVYSPLVKAVRSGNIEDFDLALSRNERKFAKRG 321 (413)
T ss_pred hheehh----HHhhHHHHhCCCCC-c-----hHHH-Hhccc-cchhHHHHHHHHcCCHHHHHHHHHHhHHHHHHcc
Confidence 112222 27788889877766 2 3333 34565 8999999999999999999999999998776654
No 4
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning]
Probab=97.08 E-value=0.0011 Score=63.94 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=101.4
Q ss_pred HHHHHHHHHccCchhhhhcccccccccC-----CchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCccchhHHHHH
Q 022902 144 PEFLQLCLLAKCYKAGLSVLEDDIYEIN-----LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVE 217 (290)
Q Consensus 144 ~~ll~lcL~ak~y~~Al~vl~~~i~~i~-----~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~~~s~i~ve 217 (290)
+.|.+.+.+-+++.-.-+++....-.++ +-.++..|+||-|...+-..||.+|...|..+.. +|...++ .-+
T Consensus 167 n~lf~Iyfri~~~~L~k~l~ra~~~~~~~~~~~~l~~~v~y~YylGr~a~~~~d~~~A~~~L~~af~~cp~~~~~--n~~ 244 (394)
T KOG2688|consen 167 NQLFQIYFRIEKLLLCKNLIRAFDQSGSDISDFPLAQLVVYHYYLGRYAMFESDFLNAFLQLNEAFRLCPDLLLK--NKR 244 (394)
T ss_pred HHHHHHHHHHhhHHHhHHHHHHhhccccchhhcccccceeeeeeeeeehhhhhhHHHHHHHHHHHHHhCcHHHHh--hhh
Confidence 7788999999998888887765433321 2568899999999999999999999999999997 8885433 222
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhhhcchhHHHHHHHhcCCChHHHHHHHHHhHHhhhcccc
Q 022902 218 AYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESVSY 287 (290)
Q Consensus 218 AyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k~~~~pY~~la~af~~~~~~~l~~~~~~~~~~f~~D~N 287 (290)
.-=+|.....+..|++| +.+.+.+ +. +.-|..++.+++.||...++..+++++..|.+=|=
T Consensus 245 ~iliylip~~~llg~~P------t~~lL~~-~~--~~~~~~lv~aVr~Gnl~~f~~al~~~E~~f~~~gi 305 (394)
T KOG2688|consen 245 LILIYLIPTGLLLGRIP------TKELLDF-YT--LDKYSPLVQAVRSGNLRLFDLALADNERFFIRSGI 305 (394)
T ss_pred hHHHHHhHHHHHhccCc------chhhHhH-hh--HHhHHHHHHHHHhccHHHHHHHHhhhHHHHHHhcc
Confidence 22235555556668877 3444444 22 67899999999999999999999999988876553
No 5
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.34 E-value=0.027 Score=43.38 Aligned_cols=94 Identities=14% Similarity=-0.011 Sum_probs=73.0
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHH
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR 194 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~ 194 (290)
.++...++..+..++.+.+.++ .....+-.+.+.....+.|+.|...++.-+-..+........++..|.++..+++++
T Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 93 (119)
T TIGR02795 15 AGDYADAIQAFQAFLKKYPKST-YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKE 93 (119)
T ss_pred cCCHHHHHHHHHHHHHHCCCcc-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChH
Confidence 3555667888888887654322 234567889999999999999999998876544444445667899999999999999
Q ss_pred HHHHHHHHhhc-cCcc
Q 022902 195 KALELLHNVVT-APMS 209 (290)
Q Consensus 195 ~A~~~l~~ais-~P~~ 209 (290)
+|..+|+.++. .|.+
T Consensus 94 ~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 94 KAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHHHHCcCC
Confidence 99999999997 6764
No 6
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.22 E-value=0.018 Score=47.56 Aligned_cols=86 Identities=14% Similarity=0.085 Sum_probs=66.1
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..++...++..++.++..- +++..---.+..+.++++..+.|+.|+..|+. + +....--.+...-|.||..+++|
T Consensus 60 ~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~---~~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 60 EQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQ-I---PDEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-c---cCcchHHHHHHHHHHHHHHCCCH
Confidence 4466666889999988865 44433334567789999999999999999966 2 22223345778899999999999
Q ss_pred HHHHHHHHHhh
Q 022902 194 RKALELLHNVV 204 (290)
Q Consensus 194 ~~A~~~l~~ai 204 (290)
++|...|+.+|
T Consensus 135 ~~A~~~y~~Al 145 (145)
T PF09976_consen 135 DEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHhC
Confidence 99999999875
No 7
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.98 E-value=0.015 Score=40.88 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=50.3
Q ss_pred HHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 146 FLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 146 ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
+.+..+..+.|+.|.+.++.-+-.. -+.-...|.-|.++..+++|++|..+|+.++. .|.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD---PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4567889999999999998876443 35788999999999999999999999999986 675
No 8
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.89 E-value=0.013 Score=43.68 Aligned_cols=78 Identities=8% Similarity=0.120 Sum_probs=52.9
Q ss_pred ccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHH
Q 022902 120 RGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALEL 199 (290)
Q Consensus 120 ~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~ 199 (290)
.++.....++.. +|+.. =...--.+.+++...+.|+.|.+++++ ..++ .......|..|.++..+++|++|...
T Consensus 7 ~Ai~~~~k~~~~-~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~--~~~~--~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 7 NAIKYYEKLLEL-DPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK--LKLD--PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp HHHHHHHHHHHH-HCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC--HTHH--HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHH-CCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH--hCCC--CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 345555555554 33211 112223368999999999999999999 2222 23466667779999999999999999
Q ss_pred HHHh
Q 022902 200 LHNV 203 (290)
Q Consensus 200 l~~a 203 (290)
|+.+
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9864
No 9
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.72 E-value=0.11 Score=41.34 Aligned_cols=89 Identities=8% Similarity=0.000 Sum_probs=66.9
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..++...++..++.++.. +|.. ...+..+...+...++|+.|.+.++.-+- ++ .+....+|+-|.+|..+++|
T Consensus 29 ~~~~~~~A~~~~~~~~~~-~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~--p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 29 QQGRYDEALKLFQLLAAY-DPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAA-LD--PDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HcccHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC--CCChHHHHHHHHHHHHcCCH
Confidence 334555566666666554 4433 56778888888999999999999987543 22 23466778899999999999
Q ss_pred HHHHHHHHHhhc-cCcc
Q 022902 194 RKALELLHNVVT-APMS 209 (290)
Q Consensus 194 ~~A~~~l~~ais-~P~~ 209 (290)
++|..+|+.++. .|..
T Consensus 102 ~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 102 ESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 999999999997 6764
No 10
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.68 E-value=0.021 Score=40.94 Aligned_cols=60 Identities=23% Similarity=0.206 Sum_probs=49.9
Q ss_pred HHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 147 LQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 147 l~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
-+.++..+.|+.|+.++++-+.--| +....+++.|+++..+++|++|.+.|+.++. .|..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDP---DDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCc---ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 3578899999999999999875323 3566677799999999999999999999998 7853
No 11
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.60 E-value=0.025 Score=34.32 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 178 ~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
.++|+-|.++..+++|++|.++|+.++. -|.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 5789999999999999999999999997 564
No 12
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.48 E-value=0.13 Score=42.49 Aligned_cols=91 Identities=11% Similarity=0.023 Sum_probs=73.5
Q ss_pred HhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHh
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK 191 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k 191 (290)
+.+.+....++..++.++. .+|.. ...|..+-..|...+.|+.|....++-+- .+ -+.-..++..|.++..++
T Consensus 34 ~~~~g~~~~A~~~~~~al~-~~P~~---~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-l~--p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 34 SWQEGDYSRAVIDFSWLVM-AQPWS---WRAHIALAGTWMMLKEYTTAINFYGHALM-LD--ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHcCCHHHHHHHHHHHHH-cCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC--CCCcHHHHHHHHHHHHcC
Confidence 3445666668888888764 46644 67788999999999999999999998773 32 245778899999999999
Q ss_pred cHHHHHHHHHHhhc-cCcc
Q 022902 192 RFRKALELLHNVVT-APMS 209 (290)
Q Consensus 192 ~~~~A~~~l~~ais-~P~~ 209 (290)
++++|...|+.++. .|..
T Consensus 107 ~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred CHHHHHHHHHHHHHhCCCC
Confidence 99999999999998 6764
No 13
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.18 E-value=0.42 Score=43.96 Aligned_cols=155 Identities=16% Similarity=0.244 Sum_probs=100.3
Q ss_pred cccccHHHHHHHHHhhCCCCC--CchhhHHHHHHHHHHc-cCchhhhhcccccc--cccC-CchhHHHHHHHHHHHHHHH
Q 022902 117 APIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLA-KCYKAGLSVLEDDI--YEIN-LPRDFFLYCYYGGMIFIGQ 190 (290)
Q Consensus 117 ~p~~~i~~L~~Ai~r~~~~~~--~LTs~H~~ll~lcL~a-k~y~~Al~vl~~~i--~~i~-~~~~~l~Y~yygG~i~~~~ 190 (290)
.|..++..+..|+.-+...+. .-.-.+..+.+.+-.. +.++.|+....+.+ ++-. ........+--.|.+++.+
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 666789999999988865543 3334667777777777 78999998888753 3322 3556677777899999999
Q ss_pred hcHHHHHHHHHHhhccCcc-chhHH-HHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhhhc------------chhH
Q 022902 191 KRFRKALELLHNVVTAPMS-SINAI-AVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNF------------SQPY 256 (290)
Q Consensus 191 k~~~~A~~~l~~ais~P~~-~~s~i-~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k~~------------~~pY 256 (290)
++|++|.+.|+.++..... ..... .-+.|=+-+|+.|. .|... . +.+.+... ++-=
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~-~~D~v-~--------A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA-MGDYV-A--------ARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH-TT-HH-H--------HHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH-cCCHH-H--------HHHHHHHHHhhCCCCCCcHHHHHH
Confidence 9999999999999986542 33333 22333445666544 46543 1 12222211 2223
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHh
Q 022902 257 MELVNTYNTGKIVELETYVQTNREK 281 (290)
Q Consensus 257 ~~la~af~~~~~~~l~~~~~~~~~~ 281 (290)
.+|.+||+.||.+.|...+..+.++
T Consensus 239 ~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 239 EDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHccc
Confidence 4688999999999999998887654
No 14
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.08 E-value=0.037 Score=33.87 Aligned_cols=31 Identities=19% Similarity=0.286 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 178 ~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
.-+|.-|.+|..+++|++|.++|++|+. -|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 3478899999999999999999999997 553
No 15
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.04 E-value=0.18 Score=35.24 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=57.1
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHH
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR 194 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~ 194 (290)
.+....++..++.++... |.. ...+..+...+...+.++.|...++..+-..+. + -..++..|.++..+++|+
T Consensus 13 ~~~~~~A~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 13 LGDYDEALEYYEKALELD-PDN---ADAYYNLAAAYYKLGKYEEALEDYEKALELDPD--N-AKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HhcHHHHHHHHHHHHhcC-Ccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--c-hhHHHHHHHHHHHHHhHH
Confidence 344555677777776543 322 145677777778888888888888765432221 1 156777888888899999
Q ss_pred HHHHHHHHhhc
Q 022902 195 KALELLHNVVT 205 (290)
Q Consensus 195 ~A~~~l~~ais 205 (290)
+|..+++.++.
T Consensus 86 ~a~~~~~~~~~ 96 (100)
T cd00189 86 EALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHc
Confidence 99998888875
No 16
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=94.88 E-value=0.25 Score=48.25 Aligned_cols=129 Identities=21% Similarity=0.322 Sum_probs=80.1
Q ss_pred HHHHHHHHccCchhhhhcccc-cccccC----CchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhccCcc----------
Q 022902 145 EFLQLCLLAKCYKAGLSVLED-DIYEIN----LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMS---------- 209 (290)
Q Consensus 145 ~ll~lcL~ak~y~~Al~vl~~-~i~~i~----~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~P~~---------- 209 (290)
-|+|+-..-+.|..|+++++. ++-.-. -+..+...+||.|-.|+.++||.+|...|..++..=..
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~ 206 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSY 206 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 467888888999999999987 331110 16788999999999999999999999999998853221
Q ss_pred chhHHHHHHHHHHHHHH--HHhcCCCCCCCCCCCCHHHHHhhhhcchhHHHHHHHhcCCChHHHHHHHHHhHHhhh
Q 022902 210 SINAIAVEAYKKYILVS--LIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFE 283 (290)
Q Consensus 210 ~~s~i~veAyKK~iLv~--Ll~~G~~~~~lPk~~s~~~~r~~k~~~~pY~~la~af~~~~~~~l~~~~~~~~~~f~ 283 (290)
.-..|.-..=|.+.|+. +.+. |..+|. .+...+|. + |.+=-..-..||.+.++.........|.
T Consensus 207 q~d~i~K~~eqMyaLlAic~~l~---p~~lde----~i~~~lke--k-y~ek~~kmq~gd~~~f~elF~~acPKFI 272 (404)
T PF10255_consen 207 QYDQINKKNEQMYALLAICLSLC---PQRLDE----SISSQLKE--K-YGEKMEKMQRGDEEAFEELFSFACPKFI 272 (404)
T ss_pred hhhHHHhHHHHHHHHHHHHHHhC---CCCCCH----HHHHHHHH--H-HHHHHHHHHccCHHHHHHHHHhhCCCcc
Confidence 11222222223333333 3322 212333 33444443 2 5554444567788888777766554443
No 17
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=2.8 Score=40.13 Aligned_cols=160 Identities=10% Similarity=0.139 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccc----cCCchhHHHHHHHHHHHHHHHhcHHHHH
Q 022902 122 VGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE----INLPRDFFLYCYYGGMIFIGQKRFRKAL 197 (290)
Q Consensus 122 i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~----i~~~~~~l~Y~yygG~i~~~~k~~~~A~ 197 (290)
+.+|..-+.|+|. ...|.-+|.+=-+.+..-++...|-.-|-..-+. +.+|+-...-..-.|+++++-|||.-|.
T Consensus 151 ~~~L~rElKKlDD-K~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTaf 229 (411)
T KOG1463|consen 151 INDLLRELKKLDD-KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAF 229 (411)
T ss_pred HHHHHHHHHhccc-ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHH
Confidence 4556666666664 3346666666555555555554444333221111 1235666777788999999999999999
Q ss_pred HHHHHhhc-cCc-c-chhHHHHHHHHHHHHHHHHhcCCCCCCCCCCC-CHHHHHhhhhcchhHHHHHHHhcCCChHHHHH
Q 022902 198 ELLHNVVT-APM-S-SINAIAVEAYKKYILVSLIHHGQFSSTLPKYT-SSAAQRNLKNFSQPYMELVNTYNTGKIVELET 273 (290)
Q Consensus 198 ~~l~~ais-~P~-~-~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~-s~~~~r~~k~~~~pY~~la~af~~~~~~~l~~ 273 (290)
.+|--|.- .-+ . -+.+. .+. ||.|+|-|.-+..- ++-..- .....+.-.+....-..+|+||.+++++.|..
T Consensus 230 SYFyEAfEgf~s~~~~v~A~--~sL-KYMlLcKIMln~~d-dv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~ 305 (411)
T KOG1463|consen 230 SYFYEAFEGFDSLDDDVKAL--TSL-KYMLLCKIMLNLPD-DVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEK 305 (411)
T ss_pred HHHHHHHccccccCCcHHHH--HHH-HHHHHHHHHhcCHH-HHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHH
Confidence 99988874 222 1 13332 234 45555544433332 221100 11111111112335567999999999999999
Q ss_pred HHHHhHHhhhccc
Q 022902 274 YVQTNREKFESVS 286 (290)
Q Consensus 274 ~~~~~~~~f~~D~ 286 (290)
....++.....|-
T Consensus 306 AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 306 ALADYKKELAEDP 318 (411)
T ss_pred HHHHhHHHHhcCh
Confidence 9999998888773
No 18
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.76 E-value=0.059 Score=38.12 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHh-cHHHHHHHHHHhhc-cC
Q 022902 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK-RFRKALELLHNVVT-AP 207 (290)
Q Consensus 142 ~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k-~~~~A~~~l~~ais-~P 207 (290)
.+..+-..+...+.|+.|+..+++-|- ++ .+.-..+|.-|.+|..++ +|++|...|+.|+. .|
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~-~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIE-LD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH-HS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-cC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345566778888999999999888763 33 234668889999999998 89999999999986 44
No 19
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.71 E-value=0.055 Score=32.46 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 180 CYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 180 ~yygG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
.|..|++|..+++|++|...|+.++. .|.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 57889999999999999999999997 785
No 20
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.29 E-value=0.34 Score=46.33 Aligned_cols=91 Identities=13% Similarity=0.081 Sum_probs=71.6
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..+....++..++.|+.. +|.. ...+..+...++..+.|+.|+..+++-+- +++ +....++..|.++..+++|
T Consensus 14 ~~~~~~~Ai~~~~~Al~~-~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~-l~P--~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDL-DPNN---AELYADRAQANIKLGNFTEAVADANKAIE-LDP--SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCc--CCHHHHHHHHHHHHHhCCH
Confidence 335556688888888864 5543 56778889999999999999999988763 332 3455677889999999999
Q ss_pred HHHHHHHHHhhc-cCccch
Q 022902 194 RKALELLHNVVT-APMSSI 211 (290)
Q Consensus 194 ~~A~~~l~~ais-~P~~~~ 211 (290)
++|..+|+.++. .|...-
T Consensus 87 ~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSR 105 (356)
T ss_pred HHHHHHHHHHHHhCCCCHH
Confidence 999999999998 788643
No 21
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=93.67 E-value=0.3 Score=47.62 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=64.6
Q ss_pred HhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHh
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK 191 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k 191 (290)
....+....+|..+..++... |.. ..+=..-.+-|+..+.|+.|+++..+.+---| +-++..|+-+.+|+.++
T Consensus 210 ~l~~~~E~~AI~ll~~aL~~~-p~d---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP---~~f~~W~~La~~Yi~~~ 282 (395)
T PF09295_consen 210 YLLMNEEVEAIRLLNEALKEN-PQD---SELLNLQAEFLLSKKKYELALEIAKKAVELSP---SEFETWYQLAECYIQLG 282 (395)
T ss_pred HHhcCcHHHHHHHHHHHHHhC-CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhcC
Confidence 334567788999999999653 323 33335667779999999999999999764322 45677778999999999
Q ss_pred cHHHHHHHHHHh
Q 022902 192 RFRKALELLHNV 203 (290)
Q Consensus 192 ~~~~A~~~l~~a 203 (290)
+|++|+-.+..|
T Consensus 283 d~e~ALlaLNs~ 294 (395)
T PF09295_consen 283 DFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHhcC
Confidence 999999877744
No 22
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.63 E-value=0.12 Score=31.34 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 178 LYCYYGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 178 ~Y~yygG~i~~~~k~~~~A~~~l~~ais 205 (290)
+.++.-|.+|..++++++|.++|+.|+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5688899999999999999999999986
No 23
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=93.58 E-value=0.75 Score=40.36 Aligned_cols=94 Identities=12% Similarity=0.040 Sum_probs=70.2
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHH----
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ---- 190 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~---- 190 (290)
.++...++..+..++... |.+......+..+.......+.++.|...+++-+-..|.....-.-+|..|+++...
T Consensus 46 ~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~ 124 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRV 124 (235)
T ss_pred cCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccc
Confidence 355556778888876654 333223346777888999999999999999987754554444444578889999876
Q ss_pred ----hcHHHHHHHHHHhhc-cCcc
Q 022902 191 ----KRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 191 ----k~~~~A~~~l~~ais-~P~~ 209 (290)
+++++|.+.|+.++. .|.+
T Consensus 125 ~~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 125 DRDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCC
Confidence 899999999999997 7875
No 24
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.12 E-value=0.8 Score=42.13 Aligned_cols=95 Identities=12% Similarity=-0.016 Sum_probs=76.7
Q ss_pred ccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHH
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRK 195 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~ 195 (290)
+....++..++..+.+++.++ .--..|-.+-+..+..+.|+.|+..+.+-+-.+|.+...-.-.|.-|.++..++++++
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~-~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDST-YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 344567888888888876433 3346788899999999999999999888876666655666777888999999999999
Q ss_pred HHHHHHHhhc-cCccch
Q 022902 196 ALELLHNVVT-APMSSI 211 (290)
Q Consensus 196 A~~~l~~ais-~P~~~~ 211 (290)
|...|+.++. .|.+..
T Consensus 236 A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 236 AKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHCcCCHH
Confidence 9999999997 898643
No 25
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.87 E-value=0.15 Score=37.02 Aligned_cols=65 Identities=12% Similarity=0.068 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHccCchhhhhcccccccc---cCC-chhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYE---INL-PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 141 s~H~~ll~lcL~ak~y~~Al~vl~~~i~~---i~~-~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais 205 (290)
.....+-..+...+.|+.|++.+++-+-- ++. ..++..-++--|.+|-.++++++|.++++.|+.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34567778888999999999999885421 122 456788999999999999999999999999875
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=92.77 E-value=2.9 Score=34.98 Aligned_cols=85 Identities=6% Similarity=-0.061 Sum_probs=42.6
Q ss_pred ccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHH
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRK 195 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~ 195 (290)
++...++..+..++.. +|.. ...+..+...+...+.++.|...+++-+-.-+. .-..++..|.++..+++|++
T Consensus 45 ~~~~~A~~~~~~~l~~-~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~g~~~~ 117 (234)
T TIGR02521 45 GDLEVAKENLDKALEH-DPDD---YLAYLALALYYQQLGELEKAEDSFRRALTLNPN---NGDVLNNYGTFLCQQGKYEQ 117 (234)
T ss_pred CCHHHHHHHHHHHHHh-Cccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcccHHH
Confidence 3333445555555432 2221 234555566666666666666665554321111 12234444566666666666
Q ss_pred HHHHHHHhhccC
Q 022902 196 ALELLHNVVTAP 207 (290)
Q Consensus 196 A~~~l~~ais~P 207 (290)
|..+|+.++..|
T Consensus 118 A~~~~~~~~~~~ 129 (234)
T TIGR02521 118 AMQQFEQAIEDP 129 (234)
T ss_pred HHHHHHHHHhcc
Confidence 666666666543
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=92.39 E-value=1.1 Score=43.18 Aligned_cols=89 Identities=11% Similarity=0.089 Sum_probs=61.6
Q ss_pred cHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCC----------------------------
Q 022902 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL---------------------------- 172 (290)
Q Consensus 121 ~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~---------------------------- 172 (290)
+..++.....++...-..-.++|..+.+..+..+.++.|..++++..-.-+.
T Consensus 244 ~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 244 GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh
Confidence 3455555555443222234567788888888888888888777664331110
Q ss_pred chhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 173 PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 173 ~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
..+.-..++.-|.++...++|++|.++|+.++. .|..
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 224456788899999999999999999999998 5874
No 28
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=92.12 E-value=1.5 Score=38.34 Aligned_cols=100 Identities=11% Similarity=0.020 Sum_probs=70.3
Q ss_pred HhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHH-HHHccC--chhhhhcccccccccCCchhHHHHHHHHHHHHH
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQL-CLLAKC--YKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFI 188 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~l-cL~ak~--y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~ 188 (290)
....+....++..++.|+. ++|+. ..++..+... +...+. ++.|..++++-+-.-+ +...-++.-|+++.
T Consensus 83 ~~~~g~~~~A~~a~~~Al~-l~P~~---~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP---~~~~al~~LA~~~~ 155 (198)
T PRK10370 83 YLWRNDYDNALLAYRQALQ-LRGEN---AELYAALATVLYYQAGQHMTPQTREMIDKALALDA---NEVTALMLLASDAF 155 (198)
T ss_pred HHHCCCHHHHHHHHHHHHH-hCCCC---HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC---CChhHHHHHHHHHH
Confidence 3345666778888988876 45544 3455666653 456676 5899999988764322 34567788899999
Q ss_pred HHhcHHHHHHHHHHhhc-cCccchhHHHHHH
Q 022902 189 GQKRFRKALELLHNVVT-APMSSINAIAVEA 218 (290)
Q Consensus 189 ~~k~~~~A~~~l~~ais-~P~~~~s~i~veA 218 (290)
.+++|++|..+++.++. .|...-..-+|++
T Consensus 156 ~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~ 186 (198)
T PRK10370 156 MQADYAQAIELWQKVLDLNSPRVNRTQLVES 186 (198)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 99999999999999997 6664433444454
No 29
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=91.79 E-value=3.7 Score=38.07 Aligned_cols=116 Identities=9% Similarity=0.046 Sum_probs=80.6
Q ss_pred HhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCC-chhHHHHHHHHHHHHHHH
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-PRDFFLYCYYGGMIFIGQ 190 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~-~~~~l~Y~yygG~i~~~~ 190 (290)
....+....++..++.++.+ +|.. ...|..+...+...+.++.|...+++-+-..+. +......++.-|.++..+
T Consensus 124 ~~~~G~~~~A~~~~~~al~~-~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 124 LEEAGQYDRAEEAARRALEL-NPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHcCCHHHHHHHHHHHHhh-CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 34556667788889998876 4433 456778899999999999999999886643332 222244566788999999
Q ss_pred hcHHHHHHHHHHhhcc-CccchhHHHHHHHHH-HHHHHHHhcCCCC
Q 022902 191 KRFRKALELLHNVVTA-PMSSINAIAVEAYKK-YILVSLIHHGQFS 234 (290)
Q Consensus 191 k~~~~A~~~l~~ais~-P~~~~s~i~veAyKK-~iLv~Ll~~G~~~ 234 (290)
+++++|...|+.++.. |. +..+.+.+.. +.+-.+...|...
T Consensus 200 G~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 200 GDYEAALAIYDTHIAPSAE---SDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CCHHHHHHHHHHHhccccC---CChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999998753 32 2222333444 5666666667544
No 30
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.71 E-value=0.26 Score=30.86 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHhh
Q 022902 181 YYGGMIFIGQKRFRKALELLHNVV 204 (290)
Q Consensus 181 yygG~i~~~~k~~~~A~~~l~~ai 204 (290)
..-|.+|..+++|++|.++|++++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467999999999999999999966
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=91.38 E-value=1.2 Score=45.00 Aligned_cols=84 Identities=13% Similarity=0.177 Sum_probs=64.9
Q ss_pred cccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHH
Q 022902 119 IRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALE 198 (290)
Q Consensus 119 ~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~ 198 (290)
..++..++.|+. ++|+. ...|..+-..+...+.++.|...+++-+- .+ + +....+|+.|.++..+++|++|..
T Consensus 321 ~~A~~~~~~Al~-ldP~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-l~-P-~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 321 IKAKEHAIKATE-LDHNN---PQALGLLGLINTIHSEYIVGSLLFKQANL-LS-P-ISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred HHHHHHHHHHHh-cCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHH-hC-C-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456777777765 46654 56788888888999999999999998763 22 2 223456777999999999999999
Q ss_pred HHHHhhc-cCcc
Q 022902 199 LLHNVVT-APMS 209 (290)
Q Consensus 199 ~l~~ais-~P~~ 209 (290)
+|+.++. -|..
T Consensus 394 ~~~~Al~l~P~~ 405 (553)
T PRK12370 394 TINECLKLDPTR 405 (553)
T ss_pred HHHHHHhcCCCC
Confidence 9999998 6774
No 32
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=91.31 E-value=1.6 Score=30.13 Aligned_cols=63 Identities=14% Similarity=0.068 Sum_probs=47.0
Q ss_pred HHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 144 PEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 144 ~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
..+.......+.++.|.+.+..-+-..+.. -..++..|.++...++|++|..+|+.++. .|..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDN---ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 345566677889999998887754322211 26678899999999999999999999987 5553
No 33
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.81 E-value=0.62 Score=25.87 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 179 YCYYGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 179 Y~yygG~i~~~~k~~~~A~~~l~~ais 205 (290)
.++--|.++..+++|++|..+|+.++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 567789999999999999999999986
No 34
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=90.78 E-value=3.9 Score=41.67 Aligned_cols=86 Identities=9% Similarity=0.026 Sum_probs=53.1
Q ss_pred ccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHH
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRK 195 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~ 195 (290)
+....++..++.++.. +|+. ...|..+...+...+.|+.|+..+++-+-..|. .-..+++-|.++..+++|++
T Consensus 413 g~~~~A~~~~~kal~l-~P~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDL-DPDF---IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE---APDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred CCHHHHHHHHHHHHHc-CccC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHccCHHH
Confidence 3444455555555543 3322 233555666666667777777776665432222 23345566888999999999
Q ss_pred HHHHHHHhhc-cCc
Q 022902 196 ALELLHNVVT-APM 208 (290)
Q Consensus 196 A~~~l~~ais-~P~ 208 (290)
|...|+.++. .|.
T Consensus 486 A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 486 AIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHHHHhcCCc
Confidence 9999999987 564
No 35
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=90.73 E-value=2.6 Score=39.56 Aligned_cols=65 Identities=11% Similarity=0.033 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHccCchhhhhcccccccccCCc--hhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP--RDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 141 s~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~--~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais 205 (290)
..+..+...+...+.|+.|...+++-+-.-+.. .....|++--|.++..++++++|..+|+.++.
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 208 (389)
T PRK11788 142 GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA 208 (389)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 344555556666666666665555433211111 11233444455566666666666666666665
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=90.65 E-value=8.4 Score=37.24 Aligned_cols=106 Identities=8% Similarity=-0.010 Sum_probs=74.5
Q ss_pred hHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHH
Q 022902 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (290)
Q Consensus 111 ~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~ 190 (290)
.+.+.+++..+...+..+..+. |+.. ..+.....++.+..+.|+.|+..++.-.-.-|...+ =.+..|.++..+
T Consensus 127 aa~~~g~~~~A~~~l~~a~~~~-p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~---~l~ll~~~~~~~ 200 (409)
T TIGR00540 127 AAQQRGDEARANQHLEEAAELA-GNDN--ILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKE---VLKLAEEAYIRS 200 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH
Confidence 3445677778888888887655 4332 123455689999999999999998875543333333 356889999999
Q ss_pred hcHHHHHHHHHHhhcc--C-ccchhHHHHHHHHHH
Q 022902 191 KRFRKALELLHNVVTA--P-MSSINAIAVEAYKKY 222 (290)
Q Consensus 191 k~~~~A~~~l~~ais~--P-~~~~s~i~veAyKK~ 222 (290)
++|++|.+.++..... + ......+..+++...
T Consensus 201 ~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 201 GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999964 2 223445555665444
No 37
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=90.47 E-value=3.6 Score=34.38 Aligned_cols=93 Identities=12% Similarity=0.052 Sum_probs=67.5
Q ss_pred hHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHH
Q 022902 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (290)
Q Consensus 111 ~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~ 190 (290)
.....+....++..++.++... |.. ...+..+...+...+.|+.|...+++-+..-+ ........+..|.++...
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~-~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 74 YYQQLGELEKAEDSFRRALTLN-PNN---GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-YPQPARSLENAGLCALKA 148 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHc
Confidence 3344566667888888888753 322 24567778888999999999999988764211 122234456679999999
Q ss_pred hcHHHHHHHHHHhhc-cCc
Q 022902 191 KRFRKALELLHNVVT-APM 208 (290)
Q Consensus 191 k~~~~A~~~l~~ais-~P~ 208 (290)
+++++|..+|+.++. .|.
T Consensus 149 g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 149 GDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred CCHHHHHHHHHHHHHhCcC
Confidence 999999999999997 555
No 38
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=90.37 E-value=16 Score=34.28 Aligned_cols=92 Identities=13% Similarity=0.061 Sum_probs=61.6
Q ss_pred hhhccccccHHHHHHHHHhhCCCCC--CchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHH
Q 022902 113 LLLEAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (290)
Q Consensus 113 ~~~~~p~~~i~~L~~Ai~r~~~~~~--~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~ 190 (290)
...++...++..++.++.. +|... .+...+..+...++..+.++.|...+++-+-..+ +....++.-|.++..+
T Consensus 152 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 152 QQEKDWQKAIDVAERLEKL-GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP---QCVRASILLGDLALAQ 227 (389)
T ss_pred HHhchHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc---CCHHHHHHHHHHHHHC
Confidence 3445555577777776654 33221 2334556667777888999999988887542111 2344567788889999
Q ss_pred hcHHHHHHHHHHhhc-cCc
Q 022902 191 KRFRKALELLHNVVT-APM 208 (290)
Q Consensus 191 k~~~~A~~~l~~ais-~P~ 208 (290)
++|++|.++|+.++. .|.
T Consensus 228 g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 228 GDYAAAIEALERVEEQDPE 246 (389)
T ss_pred CCHHHHHHHHHHHHHHChh
Confidence 999999999999886 444
No 39
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=90.29 E-value=1.5 Score=35.62 Aligned_cols=93 Identities=14% Similarity=0.036 Sum_probs=65.5
Q ss_pred HhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCC--chhHHHHHHHHHHHH
Q 022902 110 DQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL--PRDFFLYCYYGGMIF 187 (290)
Q Consensus 110 ~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~--~~~~l~Y~yygG~i~ 187 (290)
......+.+..+|+..+.|+.. ..++....-.=..+-..+-.-+.++.|+.+++..+-++|. ..+-+. ++.+|+.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~--~f~Al~L 85 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR--VFLALAL 85 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH--HHHHHHH
Confidence 3445678888999999999874 3333322222223444455667999999999998877664 233444 4467899
Q ss_pred HHHhcHHHHHHHHHHhhc
Q 022902 188 IGQKRFRKALELLHNVVT 205 (290)
Q Consensus 188 ~~~k~~~~A~~~l~~ais 205 (290)
..++++++|..++..++.
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999998874
No 40
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=89.91 E-value=0.55 Score=33.91 Aligned_cols=32 Identities=13% Similarity=0.112 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcc
Q 022902 175 DFFLYCYYGGMIFIGQKRFRKALELLHNVVTA 206 (290)
Q Consensus 175 ~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~ 206 (290)
+....+..-|.+|-.+++|++|+++|+.|+..
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999854
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=89.71 E-value=20 Score=34.59 Aligned_cols=94 Identities=9% Similarity=0.089 Sum_probs=61.3
Q ss_pred hHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHH-HHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHH
Q 022902 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLC-LLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG 189 (290)
Q Consensus 111 ~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lc-L~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~ 189 (290)
.+...+.+..++..+..++.+..++.. .. +..+.+.- +..+..+.++..+++..-.-|...+ +.+...-|.++..
T Consensus 272 ~l~~~g~~~~A~~~l~~~l~~~pd~~~-~~--~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~-~~ll~sLg~l~~~ 347 (409)
T TIGR00540 272 HLIDCDDHDSAQEIIFDGLKKLGDDRA-IS--LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPK-CCINRALGQLLMK 347 (409)
T ss_pred HHHHCCChHHHHHHHHHHHhhCCCccc-ch--hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHH
Confidence 444557778889999999887654432 11 22222222 3345667777777665432222222 5788888999999
Q ss_pred HhcHHHHHHHHH--Hhhc-cCc
Q 022902 190 QKRFRKALELLH--NVVT-APM 208 (290)
Q Consensus 190 ~k~~~~A~~~l~--~ais-~P~ 208 (290)
+++|++|.++|+ .++. .|.
T Consensus 348 ~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 348 HGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred cccHHHHHHHHHHhHHhhcCCC
Confidence 999999999999 5666 565
No 42
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=89.68 E-value=1.9 Score=44.59 Aligned_cols=78 Identities=5% Similarity=0.027 Sum_probs=34.9
Q ss_pred cHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHH
Q 022902 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELL 200 (290)
Q Consensus 121 ~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l 200 (290)
++..++.|+. .+|+. ...+..+...+...+.++.|+..+++-+- .++. .-...++-|.++..+++|++|...|
T Consensus 269 A~~~~~~Al~-l~P~~---~~a~~~lg~~l~~~g~~~eA~~~l~~al~-l~P~--~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 269 AAEHWRHALQ-FNSDN---VRIVTLYADALIRTGQNEKAIPLLQQSLA-THPD--LPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred HHHHHHHHHh-hCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCC--CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444444443 23322 23445555555555555555555554331 2111 1112223345555555555555555
Q ss_pred HHhhc
Q 022902 201 HNVVT 205 (290)
Q Consensus 201 ~~ais 205 (290)
+.++.
T Consensus 342 ~~al~ 346 (656)
T PRK15174 342 VQLAR 346 (656)
T ss_pred HHHHH
Confidence 55553
No 43
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.64 E-value=0.64 Score=32.27 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 178 ~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.|.||.++-+..+++|++|..+.+.++. -|.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 4889999999999999999999999997 7874
No 44
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.60 E-value=0.71 Score=43.08 Aligned_cols=98 Identities=19% Similarity=0.278 Sum_probs=68.6
Q ss_pred HHHHHHHHhcHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhhhc--chhHHHHH
Q 022902 183 GGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNF--SQPYMELV 260 (290)
Q Consensus 183 gG~i~~~~k~~~~A~~~l~~ais~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k~~--~~pY~~la 260 (290)
||.....-++|++|.-=|.-|..-=-.+-|.=...|.|-+||...|....+- |+. |+- .+.+|+. .-.-.+++
T Consensus 237 GGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iN-PFD---sQE-AKPyKNdPEIlAMTnlv 311 (440)
T KOG1464|consen 237 GGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN-PFD---SQE-AKPYKNDPEILAMTNLV 311 (440)
T ss_pred CCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCC-CCc---ccc-cCCCCCCHHHHHHHHHH
Confidence 7888899999999976555555432335566677889999999988876665 553 222 2233331 12335789
Q ss_pred HHhcCCChHHHHHHHHHhHHhhhcc
Q 022902 261 NTYNTGKIVELETYVQTNREKFESV 285 (290)
Q Consensus 261 ~af~~~~~~~l~~~~~~~~~~f~~D 285 (290)
+||..+|+.+|++++..|++.--.|
T Consensus 312 ~aYQ~NdI~eFE~Il~~~~~~IM~D 336 (440)
T KOG1464|consen 312 AAYQNNDIIEFERILKSNRSNIMDD 336 (440)
T ss_pred HHHhcccHHHHHHHHHhhhcccccc
Confidence 9999999999999999988765444
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=89.52 E-value=14 Score=34.12 Aligned_cols=33 Identities=9% Similarity=0.173 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHhcHHHHHHHHHHhhccC
Q 022902 175 DFFLYCYYGGMIFIGQKRFRKALELLHNVVTAP 207 (290)
Q Consensus 175 ~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~P 207 (290)
...+-+||-|+++..++++++|..+|+.|+..+
T Consensus 234 ~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 234 RLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 345679999999999999999999999999843
No 46
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=89.32 E-value=2.3 Score=33.67 Aligned_cols=77 Identities=9% Similarity=-0.026 Sum_probs=57.9
Q ss_pred HHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhh
Q 022902 125 MLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVV 204 (290)
Q Consensus 125 L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ai 204 (290)
++.++. .+|.. ......+...++..++|+.|...+++-+- .+ .+.-..++..|.++..+++|++|..+|+.++
T Consensus 6 ~~~~l~-~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 6 LKDLLG-LDSEQ---LEQIYALAYNLYQQGRYDEALKLFQLLAA-YD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred HHHHHc-CChhh---HHHHHHHHHHHHHcccHHHHHHHHHHHHH-hC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 45543 35567888899999999999999877543 22 1345677888999999999999999999999
Q ss_pred c-cCc
Q 022902 205 T-APM 208 (290)
Q Consensus 205 s-~P~ 208 (290)
. .|.
T Consensus 79 ~~~p~ 83 (135)
T TIGR02552 79 ALDPD 83 (135)
T ss_pred hcCCC
Confidence 7 555
No 47
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=89.13 E-value=1.2 Score=36.83 Aligned_cols=64 Identities=5% Similarity=-0.131 Sum_probs=52.3
Q ss_pred HHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 143 HPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 143 H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
+..+-......+.|+.|+..++.-+- ++ -+...+++.-|.++..+++|++|.++|+.++. .|..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~-~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM-AQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-cC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34567788899999999998888652 22 23578889999999999999999999999998 6764
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=89.00 E-value=0.68 Score=42.03 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=65.7
Q ss_pred HHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHH
Q 022902 109 KDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFI 188 (290)
Q Consensus 109 ~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~ 188 (290)
+....+.+++..++..++.|+.. +|.. ..+...++...+..+.++.+.++++.-.-..++..+ +...-|.+|.
T Consensus 153 a~~~~~~G~~~~A~~~~~~al~~-~P~~---~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~---~~~~la~~~~ 225 (280)
T PF13429_consen 153 AEIYEQLGDPDKALRDYRKALEL-DPDD---PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD---LWDALAAAYL 225 (280)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHH--TT----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC---HCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc-CCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH---HHHHHHHHhc
Confidence 33444567888899999999876 5544 345677888889999999877777664322222222 3344599999
Q ss_pred HHhcHHHHHHHHHHhhc-cCcc
Q 022902 189 GQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 189 ~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.++++++|+++|+.++. .|.+
T Consensus 226 ~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 226 QLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHT-HHHHHHHHHHHHHHSTT-
T ss_pred cccccccccccccccccccccc
Confidence 99999999999999998 6664
No 49
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=88.89 E-value=3.9 Score=41.84 Aligned_cols=95 Identities=11% Similarity=0.042 Sum_probs=70.1
Q ss_pred HHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHH
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIF 187 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~ 187 (290)
.+......+.+..++..+..++.. +|.. ...+..+.+..+..+.|+.|...+++-+-.-+ +....+++.|.++
T Consensus 131 ~~~~~~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~ 203 (899)
T TIGR02917 131 RGLAYLGLGQLELAQKSYEQALAI-DPRS---LYAKLGLAQLALAENRFDEARALIDEVLTADP---GNVDALLLKGDLL 203 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-CCCC---hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHH
Confidence 333444556677788888888764 4433 23557788889999999999999988653222 2345667789999
Q ss_pred HHHhcHHHHHHHHHHhhc-cCcc
Q 022902 188 IGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 188 ~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
..+++|++|..+|+.++. .|..
T Consensus 204 ~~~g~~~~A~~~~~~a~~~~p~~ 226 (899)
T TIGR02917 204 LSLGNIELALAAYRKAIALRPNN 226 (899)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999999997 6764
No 50
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=88.86 E-value=1.2 Score=39.05 Aligned_cols=74 Identities=9% Similarity=-0.040 Sum_probs=58.8
Q ss_pred CCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 136 TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 136 ~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.+.-...+-.+.+.++..+.|+.|...+++-+-..+.....-.-+|.-|.++..+++|++|...|+.++. .|.+
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 103 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH 103 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 3444567788888999999999999999886544343334445678889999999999999999999998 7864
No 51
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=88.81 E-value=0.3 Score=34.19 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=41.9
Q ss_pred HHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 151 LLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 151 L~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
+..+.|+.|+..+.+-+-..| +.....+.-|.+|+.+++|++|...|+.++. .|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP---DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT---TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 567788888888888654333 3455666789999999999999999999886 676
No 52
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=88.37 E-value=12 Score=35.85 Aligned_cols=198 Identities=11% Similarity=0.086 Sum_probs=120.0
Q ss_pred hhhhHHHHHHHHHhcCChhhhhhhhHhHHHHHHHHHHhHhhhccccccHHHHHHHHHhhCCCCC--CchhhHHHHHHHHH
Q 022902 74 RANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCL 151 (290)
Q Consensus 74 ~~~~l~~~v~~fl~~f~~~Qlr~a~~~~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~--~LTs~H~~ll~lcL 151 (290)
.++.+.+...+|+..|-++ .=| .++|+.+.....+.+.+.+++..|..-+.+++...+ -.--+|....++.|
T Consensus 53 ~~~~~l~lY~NFvsefe~k---INp---lslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L 126 (380)
T KOG2908|consen 53 AGDLLLQLYLNFVSEFETK---INP---LSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKL 126 (380)
T ss_pred cchHHHHHHHHHHHHHhhc---cCh---HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 3445667777777765431 111 122333333344555667788888888888865544 67778999999999
Q ss_pred HccCchhhhhcccccccccCC-----chhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhccC-cc--chhHHHHHHHHHHH
Q 022902 152 LAKCYKAGLSVLEDDIYEINL-----PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAP-MS--SINAIAVEAYKKYI 223 (290)
Q Consensus 152 ~ak~y~~Al~vl~~~i~~i~~-----~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~P-~~--~~s~i~veAyKK~i 223 (290)
.-+..+.+.+.+|.---.++. ++-+-.||..+..-|=..+++..+....-.=+++- .+ +.|.-+.-|+- +.
T Consensus 127 ~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL~~~d~~~l~~se~~~lA~~-L~ 205 (380)
T KOG2908|consen 127 EINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYRHALLYLGCSDIDDLSESEKQDLAFD-LS 205 (380)
T ss_pred hcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccccccccCHHHHHHHHHH-HH
Confidence 999999999988874332322 34556777777777777888876655444444322 22 33433333332 44
Q ss_pred HHHHHhcCCCCCCCCCCC-CHHHHHhhhhcchhHHHHHHHhcCCChHHHHHHHHHhHH
Q 022902 224 LVSLIHHGQFSSTLPKYT-SSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNRE 280 (290)
Q Consensus 224 Lv~Ll~~G~~~~~lPk~~-s~~~~r~~k~~~~pY~~la~af~~~~~~~l~~~~~~~~~ 280 (290)
+-.||.. ++- ..-... .|.....-.+.-..-.++..||++||.++|+....++.+
T Consensus 206 ~aALLGe-~iy-NfGELL~HPilesL~gT~~eWL~dll~Afn~Gdl~~f~~l~~~~~~ 261 (380)
T KOG2908|consen 206 LAALLGE-NIY-NFGELLAHPILESLKGTNREWLKDLLIAFNSGDLKRFESLKGVWGK 261 (380)
T ss_pred HHHHhcc-ccc-cHHHHHhhHHHHHhcCCcHHHHHHHHHHhccCCHHHHHHHHHHhcc
Confidence 4444432 122 111111 344333333355678899999999999999988776544
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=87.34 E-value=17 Score=36.79 Aligned_cols=162 Identities=12% Similarity=0.081 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhHhhhccccccHHHHHHHHHhhC----CCCCCchhhHHHHHHHHHHccCchhhhhccccc--cccc---C
Q 022902 101 FINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQ----SSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDD--IYEI---N 171 (290)
Q Consensus 101 ~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~----~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~--i~~i---~ 171 (290)
+...++.++......++...++..+..|+.-.. ++....-.+|..|..++...+.|+.|.+..++. |++- .
T Consensus 240 va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~ 319 (508)
T KOG1840|consen 240 VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA 319 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc
Confidence 444455566666667777778999888887765 445667788899999999999999999888874 4432 3
Q ss_pred CchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcc----CccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHH
Q 022902 172 LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA----PMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQR 247 (290)
Q Consensus 172 ~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~----P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r 247 (290)
.+.++-..+-..|.++..+.++++|..++..++.. |. .-.+++.-+|-=+=..+..+|+.- +--++--..+++
T Consensus 320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g--~~~~~~a~~~~nl~~l~~~~gk~~-ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG--EDNVNLAKIYANLAELYLKMGKYK-EAEELYKKAIQI 396 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc--ccchHHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHH
Confidence 47889999999999999999999999999988863 43 333455555555555556667766 422222222332
Q ss_pred h----hh---hcchhHHHHHHHhcC
Q 022902 248 N----LK---NFSQPYMELVNTYNT 265 (290)
Q Consensus 248 ~----~k---~~~~pY~~la~af~~ 265 (290)
. .+ ....|+.+++.++..
T Consensus 397 ~~~~~~~~~~~~~~~l~~la~~~~~ 421 (508)
T KOG1840|consen 397 LRELLGKKDYGVGKPLNQLAEAYEE 421 (508)
T ss_pred HHhcccCcChhhhHHHHHHHHHHHH
Confidence 2 11 124688888888854
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=87.27 E-value=4.5 Score=39.30 Aligned_cols=101 Identities=17% Similarity=0.064 Sum_probs=68.9
Q ss_pred hhhhhHhHHHHHHHHHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCc
Q 022902 94 IRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP 173 (290)
Q Consensus 94 lr~a~~~~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~ 173 (290)
+|--|.....++..+.+ ++...-+.+.++.++.+.-. ++ .+-+--|+.-+.+.+=.+.+++.+...+..
T Consensus 259 lr~~p~l~~~~a~~li~----l~~~~~A~~~i~~~Lk~~~D-~~------L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 259 LRNDPELVVAYAERLIR----LGDHDEAQEIIEDALKRQWD-PR------LCRLIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred hhcChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhccC-hh------HHHHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 44444444444444444 34455577888888877521 22 333445778888888888888876654422
Q ss_pred hhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 174 RDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 174 ~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
. .-+++-|+.|...|.|.+|..+|+.++. -|+
T Consensus 328 p---~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 328 P---LLLSTLGRLALKNKLWGKASEALEAALKLRPS 360 (400)
T ss_pred h---hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 1 5677889999999999999999999997 566
No 55
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=87.20 E-value=4.5 Score=42.39 Aligned_cols=127 Identities=8% Similarity=-0.024 Sum_probs=76.7
Q ss_pred hhhhhhHHHHHHHHHhcCChhhhhhhh-HhHHHHHHH----------HHHhHhhhccccccHHHHHHHHHhhCCCCCCch
Q 022902 72 KERANTLVPIIARFITSCSAEQIRYVP-EKFINVCKR----------YKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLT 140 (290)
Q Consensus 72 ~~~~~~l~~~v~~fl~~f~~~Qlr~a~-~~~~~l~~~----------~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LT 140 (290)
.+.+.++..+...-++.--+.|+-.+. .+...+++. +++...+.+...-+...+.+++. ++|.. .
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~-~~Pd~---~ 120 (694)
T PRK15179 45 EEAGRELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ-RFPDS---S 120 (694)
T ss_pred hhHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-hCCCc---H
Confidence 344557777777777776666654221 122222222 22223334444444555555443 45533 5
Q ss_pred hhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 141 s~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais 205 (290)
..+..+.+.+.+-+.++.|+...++-.-. .-+....++--|+.+..+++|++|.++|+.++.
T Consensus 121 ~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 121 EAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 56677777777778888887776664321 235677788888888888888888888888886
No 56
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=86.95 E-value=1.8 Score=36.52 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 142 ~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.+..+...+...+.|+.|...+++.+-.-+.+.+...+++.-|.++..+++|++|..+++.++. .|..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 3455666777889999999988876532222334567889999999999999999999999998 6654
No 57
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=86.00 E-value=14 Score=37.44 Aligned_cols=154 Identities=12% Similarity=0.058 Sum_probs=89.2
Q ss_pred CcchhHHHHHHHHHHhhhcccc---hhhhhhHHHHHHHHHhcCC-h--hhhhh-hhHhHHHHHHHHHHhHhhhccccc--
Q 022902 50 DPSKHSLGYLYFLEPCMYCSIT---KERANTLVPIIARFITSCS-A--EQIRY-VPEKFINVCKRYKDQVLLLEAPIR-- 120 (290)
Q Consensus 50 dp~~~sl~~L~vL~a~~~~~~~---~~~~~~l~~~v~~fl~~f~-~--~Qlr~-a~~~~~~l~~~~~~~~~~~~~p~~-- 120 (290)
+|+.+.+-..+.-...+....+ ......+.+.+..+...++ + ..+.+ -++.|...++.+.......+-|..
T Consensus 68 NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~ 147 (517)
T PF12569_consen 68 NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFS 147 (517)
T ss_pred CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 7876655444432222222111 1223344554444444333 2 22333 357888888887775444444421
Q ss_pred cHHH----------HHHHHHhhC----C-------------CCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCc
Q 022902 121 GVGP----------MLTAIRKIQ----S-------------STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP 173 (290)
Q Consensus 121 ~i~~----------L~~Ai~r~~----~-------------~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~ 173 (290)
.|.+ +...+..+- . +++++--++-.+.+.+-.-+.|+.|+..+|+.|-+-|+
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt- 226 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT- 226 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-
Confidence 1222 223333321 1 12222235566777888888899999999988865443
Q ss_pred hhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcc
Q 022902 174 RDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA 206 (290)
Q Consensus 174 ~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~ 206 (290)
..++|+.-|.|+-..|++++|.++++.|-..
T Consensus 227 --~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 227 --LVELYMTKARILKHAGDLKEAAEAMDEAREL 257 (517)
T ss_pred --cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 4778889999999999999999999888774
No 58
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=85.97 E-value=2.5 Score=35.33 Aligned_cols=68 Identities=16% Similarity=0.003 Sum_probs=52.9
Q ss_pred chhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcc
Q 022902 139 LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA 206 (290)
Q Consensus 139 LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~ 206 (290)
-...+..+...+...+.|+.|+..+++.+-..+.+.+...-++.-|+++..++++++|..+++.++..
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45666777888888899999999988875333323334445677899999999999999999999984
No 59
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=85.94 E-value=0.79 Score=41.60 Aligned_cols=90 Identities=18% Similarity=0.062 Sum_probs=46.1
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..+.|..++..+..+..+. +++..+. ..+..+...+.++.+..+++.-. ..+...+--.|++..|.++...+++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~-~~~~~l~----~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERD-GDPRYLL----SALQLYYRLGDYDEAEELLEKLE-ELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHH-H-T---T-HHHHHHHHHHHHHCCHH
T ss_pred ccccccccccccccccccc-cccchhh----HHHHHHHHHhHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHHHHcCCH
Confidence 4467778888888887764 4454443 35677889999999999998833 2222346678899999999999999
Q ss_pred HHHHHHHHHhhc-cCcc
Q 022902 194 RKALELLHNVVT-APMS 209 (290)
Q Consensus 194 ~~A~~~l~~ais-~P~~ 209 (290)
++|..+|+.++. .|.+
T Consensus 163 ~~A~~~~~~al~~~P~~ 179 (280)
T PF13429_consen 163 DKALRDYRKALELDPDD 179 (280)
T ss_dssp HHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 999999999998 8974
No 60
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=85.79 E-value=44 Score=34.60 Aligned_cols=129 Identities=11% Similarity=0.059 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc---cCccchhHHHHHH
Q 022902 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT---APMSSINAIAVEA 218 (290)
Q Consensus 142 ~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais---~P~~~~s~i~veA 218 (290)
+.+.|+..|.+.+.++.|..+++.-. .+|...|- --...|+..+++++|.+.|+.... .|....-..++.+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n-~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMP-----EKTTVAWN-SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCC-----CCChhHHH-HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34677888889999999998887532 22333332 233457788999999999988764 3443333334444
Q ss_pred HHH--------HHHHHHHhcCCCCCCCCCCCC-----------HHHHHhh----hhcchhHHHHHHHh-cCCChHHHHHH
Q 022902 219 YKK--------YILVSLIHHGQFSSTLPKYTS-----------SAAQRNL----KNFSQPYMELVNTY-NTGKIVELETY 274 (290)
Q Consensus 219 yKK--------~iLv~Ll~~G~~~~~lPk~~s-----------~~~~r~~----k~~~~pY~~la~af-~~~~~~~l~~~ 274 (290)
|-+ .+.-..+..|-.| ..--|++ ..+.+.| ++....|..+..+| ..|+.++-..+
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~l 413 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPL-DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEM 413 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCC-CeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHH
Confidence 322 2333344445433 2222211 1111222 23445677777776 45666665555
Q ss_pred HHH
Q 022902 275 VQT 277 (290)
Q Consensus 275 ~~~ 277 (290)
+++
T Consensus 414 f~~ 416 (697)
T PLN03081 414 FER 416 (697)
T ss_pred HHH
Confidence 554
No 61
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=85.74 E-value=1.3 Score=28.83 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhhc-cCccc
Q 022902 180 CYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (290)
Q Consensus 180 ~yygG~i~~~~k~~~~A~~~l~~ais-~P~~~ 210 (290)
++.-|..|..++++++|..+|+.++. .|.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 34568999999999999999999998 89753
No 62
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=85.70 E-value=26 Score=35.73 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=65.6
Q ss_pred HhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHh
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK 191 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k 191 (290)
....++...++..++.++.. .|.+ ...+..+.+.....+.|+.|...+..-.. .........++..|.++..++
T Consensus 66 ~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 139 (899)
T TIGR02917 66 YLALGDYAAAEKELRKALSL-GYPK---NQVLPLLARAYLLQGKFQQVLDELPGKTL--LDDEGAAELLALRGLAYLGLG 139 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHc-CCCh---hhhHHHHHHHHHHCCCHHHHHHhhccccc--CCchhhHHHHHHHHHHHHHcC
Confidence 33456666788888888764 3333 23567788889999999999888865321 113345667788889999999
Q ss_pred cHHHHHHHHHHhhc-cCcc
Q 022902 192 RFRKALELLHNVVT-APMS 209 (290)
Q Consensus 192 ~~~~A~~~l~~ais-~P~~ 209 (290)
+|++|..+|+.++. .|..
T Consensus 140 ~~~~A~~~~~~a~~~~~~~ 158 (899)
T TIGR02917 140 QLELAQKSYEQALAIDPRS 158 (899)
T ss_pred CHHHHHHHHHHHHhcCCCC
Confidence 99999999999887 5653
No 63
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=85.37 E-value=5.5 Score=33.23 Aligned_cols=90 Identities=10% Similarity=-0.007 Sum_probs=57.5
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCC----chhHHHHHHHHHHHHHH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL----PRDFFLYCYYGGMIFIG 189 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~----~~~~l~Y~yygG~i~~~ 189 (290)
..+....++..++.|+.- .+++......|..+-.++...+.++.|+..+.+.+-.-+. .......++..|..+..
T Consensus 47 ~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~ 125 (168)
T CHL00033 47 SEGEYAEALQNYYEAMRL-EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIE 125 (168)
T ss_pred HcCCHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHH
Confidence 345566678888888764 3333334457888999999999999999999886532221 11223334444444558
Q ss_pred HhcHHHHHHHHHHhh
Q 022902 190 QKRFRKALELLHNVV 204 (290)
Q Consensus 190 ~k~~~~A~~~l~~ai 204 (290)
+++|++|..++..++
T Consensus 126 ~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 126 QGDSEIAEAWFDQAA 140 (168)
T ss_pred cccHHHHHHHHHHHH
Confidence 888886666555544
No 64
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=85.32 E-value=1.2 Score=33.90 Aligned_cols=34 Identities=24% Similarity=0.599 Sum_probs=29.0
Q ss_pred hhHHHHHHHhcCCChHHHHHHHHHh-HHhhhcccc
Q 022902 254 QPYMELVNTYNTGKIVELETYVQTN-REKFESVSY 287 (290)
Q Consensus 254 ~pY~~la~af~~~~~~~l~~~~~~~-~~~f~~D~N 287 (290)
.||.++.++|.+||...+...++++ ...|.+++.
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 35 (105)
T PF01399_consen 1 PPYSELLRAFRSGDLQEFEEFLEKHSESLFKDPFL 35 (105)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHTCHHHHHCTTH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCccH
Confidence 4899999999999999999999999 777776654
No 65
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=85.01 E-value=1.9 Score=32.87 Aligned_cols=64 Identities=19% Similarity=0.164 Sum_probs=46.9
Q ss_pred HHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 146 FLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 146 ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
+....+..+.|+.|...++.-+-..+.......-.|.-|.++...++|++|...|+.++. .|..
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 445667788999999888776643332222234467789999999999999999999997 6663
No 66
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=84.82 E-value=4.4 Score=44.15 Aligned_cols=90 Identities=8% Similarity=-0.063 Sum_probs=54.9
Q ss_pred hhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhc
Q 022902 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (290)
Q Consensus 113 ~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~ 192 (290)
.+.+.+..++..++.|+.. +|+. ...|..+-......+.++.|+..+++.+-.- + +....++.-|+++..+++
T Consensus 620 ~~lG~~deA~~~l~~AL~l-~Pd~---~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P-~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALEL-EPNN---SNYQAALGYALWDSGDIAQSREMLERAHKGL--P-DDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHCCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHCCC
Confidence 3344444455555555443 3332 2345555555555666666666655544211 1 345678888888888888
Q ss_pred HHHHHHHHHHhhc-cCcc
Q 022902 193 FRKALELLHNVVT-APMS 209 (290)
Q Consensus 193 ~~~A~~~l~~ais-~P~~ 209 (290)
+++|..+|+.++. .|..
T Consensus 693 ~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 693 MAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 8888888888886 6754
No 67
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.67 E-value=1.8 Score=26.90 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 178 LYCYYGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 178 ~Y~yygG~i~~~~k~~~~A~~~l~~ais 205 (290)
.-+.--|.+|..+++|++|..+++.++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455679999999999999999999885
No 68
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=83.81 E-value=1.8 Score=30.28 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 178 ~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
..++.-|.++..+++|++|..+|+.+|. -|..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~ 36 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN 36 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 4678889999999999999999999997 6764
No 69
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.93 E-value=6.1 Score=35.18 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=34.5
Q ss_pred chhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhccCccch
Q 022902 173 PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSI 211 (290)
Q Consensus 173 ~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~P~~~~ 211 (290)
..+-..-.|..|-+.-.++++++|..||..+|+.|....
T Consensus 161 ~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 161 GMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 446677889999999999999999999999999998544
No 70
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=82.84 E-value=5.6 Score=36.52 Aligned_cols=129 Identities=9% Similarity=-0.014 Sum_probs=85.4
Q ss_pred hhhhHHHHHHHHH-hcCChhhhhhhhHhHHHHHHHHHHhHhhh-ccccccHHHHHHHHHhhCCCCC--CchhhHHHHHHH
Q 022902 74 RANTLVPIIARFI-TSCSAEQIRYVPEKFINVCKRYKDQVLLL-EAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQL 149 (290)
Q Consensus 74 ~~~~l~~~v~~fl-~~f~~~Qlr~a~~~~~~l~~~~~~~~~~~-~~p~~~i~~L~~Ai~r~~~~~~--~LTs~H~~ll~l 149 (290)
+..+.+.++.+.. ..-++.+. . .....+++..... +.+..++...+.|+.-+..++. ...-....+..+
T Consensus 92 ~Ai~~~~~A~~~y~~~G~~~~a---A----~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 92 EAIECYEKAIEIYREAGRFSQA---A----KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHH---H----HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHH---H----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 4445555555533 33333333 2 2333444444455 6788899999999999865553 334555677888
Q ss_pred HHHccCchhhhhcccccccccC---Cch-hHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 150 CLLAKCYKAGLSVLEDDIYEIN---LPR-DFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 150 cL~ak~y~~Al~vl~~~i~~i~---~~~-~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
+...+.|+.|..++++-+...- ..+ .+=.|+.-.++++..++|+-.|...|+.... -|+-
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 9999999999999988654321 122 3557889999999999999999999999987 5763
No 71
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=82.45 E-value=7.5 Score=32.62 Aligned_cols=91 Identities=10% Similarity=-0.022 Sum_probs=61.6
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhc--
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR-- 192 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~-- 192 (290)
.+....++..++.|+..- |++......+..+-..+...+.|+.|...+.+-+-.-+ +....++.-|.++..+++
T Consensus 48 ~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~ 123 (172)
T PRK02603 48 DGEYAEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP---KQPSALNNIAVIYHKRGEKA 123 (172)
T ss_pred cCCHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcCChH
Confidence 355556788888887643 33322346788889999999999999999988664222 223445555778777665
Q ss_pred ------------HHHHHHHHHHhhc-cCcc
Q 022902 193 ------------FRKALELLHNVVT-APMS 209 (290)
Q Consensus 193 ------------~~~A~~~l~~ais-~P~~ 209 (290)
|++|.++++.++. .|.+
T Consensus 124 ~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 124 EEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred hHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 5677777777776 5664
No 72
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=82.18 E-value=8 Score=40.75 Aligned_cols=94 Identities=9% Similarity=-0.039 Sum_probs=73.5
Q ss_pred HhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHH
Q 022902 110 DQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG 189 (290)
Q Consensus 110 ~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~ 189 (290)
..+...+....++..+..++.. .|.. ..++..+..+....+.++.|+..+++-+-.-| +...+.|.-|+++..
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~-~P~n---~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P---d~~~l~~~~a~~al~ 439 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYN-APGN---QGLRIDYASVLQARGWPRAAENELKKAEVLEP---RNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHH
Confidence 3444556666788888888665 4433 56788899999999999999999998664322 445688899999999
Q ss_pred HhcHHHHHHHHHHhhc-cCccc
Q 022902 190 QKRFRKALELLHNVVT-APMSS 210 (290)
Q Consensus 190 ~k~~~~A~~~l~~ais-~P~~~ 210 (290)
+++|++|...++.++. .|-+.
T Consensus 440 ~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred hCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999997 78764
No 73
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=81.75 E-value=8.1 Score=39.40 Aligned_cols=88 Identities=10% Similarity=0.033 Sum_probs=55.1
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..+++..++..+..++.. +|. ....+..+...+...+.|+.|+..+++-+- +++ +....+|..|.++..+++|
T Consensus 343 ~~g~~~eA~~~~~kal~l-~P~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~-~~p--~~~~~~~~lg~~~~~~g~~ 415 (615)
T TIGR00990 343 LKGKHLEALADLSKSIEL-DPR---VTQSYIKRASMNLELGDPDKAEEDFDKALK-LNS--EDPDIYYHRAQLHFIKGEF 415 (615)
T ss_pred HcCCHHHHHHHHHHHHHc-CCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCC--CCHHHHHHHHHHHHHcCCH
Confidence 345555667777776653 432 244566666777777788888877776542 221 1234556667777777777
Q ss_pred HHHHHHHHHhhc-cCc
Q 022902 194 RKALELLHNVVT-APM 208 (290)
Q Consensus 194 ~~A~~~l~~ais-~P~ 208 (290)
++|..+|+.++. -|.
T Consensus 416 ~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 416 AQAGKDYQKSIDLDPD 431 (615)
T ss_pred HHHHHHHHHHHHcCcc
Confidence 777777777776 554
No 74
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=81.48 E-value=52 Score=31.66 Aligned_cols=89 Identities=9% Similarity=0.018 Sum_probs=65.1
Q ss_pred HhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHh
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK 191 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k 191 (290)
+.+.+++..+...+..|.. .+|+.. ........+.++..+.|+.|+..+++-.-.-|. .-......+.+|...+
T Consensus 128 A~~~g~~~~A~~~l~~A~~-~~~~~~--~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~---~~~al~ll~~~~~~~g 201 (398)
T PRK10747 128 AQQRGDEARANQHLERAAE-LADNDQ--LPVEITRVRIQLARNENHAARHGVDKLLEVAPR---HPEVLRLAEQAYIRTG 201 (398)
T ss_pred HHHCCCHHHHHHHHHHHHh-cCCcch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHH
Confidence 3567778888888888865 344332 222234478999999999999999886533332 2455666789999999
Q ss_pred cHHHHHHHHHHhhcc
Q 022902 192 RFRKALELLHNVVTA 206 (290)
Q Consensus 192 ~~~~A~~~l~~ais~ 206 (290)
+|++|.+.+......
T Consensus 202 dw~~a~~~l~~l~k~ 216 (398)
T PRK10747 202 AWSSLLDILPSMAKA 216 (398)
T ss_pred hHHHHHHHHHHHHHc
Confidence 999999999988864
No 75
>PLN03077 Protein ECB2; Provisional
Probab=81.12 E-value=12 Score=39.76 Aligned_cols=157 Identities=15% Similarity=0.140 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccc--cccCCchhHHH
Q 022902 101 FINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDI--YEINLPRDFFL 178 (290)
Q Consensus 101 ~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i--~~i~~~~~~l~ 178 (290)
|..+...+.. .+....++..+...... ...|+..| -..++..|.+++.++.|..+++.-. ..+.+. . .
T Consensus 557 ~n~lI~~~~~----~G~~~~A~~lf~~M~~~-g~~Pd~~T--~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~--~-~ 626 (857)
T PLN03077 557 WNILLTGYVA----HGKGSMAVELFNRMVES-GVNPDEVT--FISLLCACSRSGMVTQGLEYFHSMEEKYSITPN--L-K 626 (857)
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHc-CCCCCccc--HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc--h-H
Confidence 5555554443 35555677777765532 22233333 3456788999999999999988744 333322 1 1
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhhhcchhHHH
Q 022902 179 YCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYME 258 (290)
Q Consensus 179 Y~yygG~i~~~~k~~~~A~~~l~~ais~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k~~~~pY~~ 258 (290)
-|---.-.+...+++++|.++++..-.-|...+-...+.||+. +|.+. +-+.....+.+.-......|.-
T Consensus 627 ~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~--------~~~~e--~~e~~a~~l~~l~p~~~~~y~l 696 (857)
T PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI--------HRHVE--LGELAAQHIFELDPNSVGYYIL 696 (857)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--------cCChH--HHHHHHHHHHhhCCCCcchHHH
Confidence 2223344577889999999999986444553333344445432 34432 2221111111111224567888
Q ss_pred HHHHh-cCCChHHHHHHHHH
Q 022902 259 LVNTY-NTGKIVELETYVQT 277 (290)
Q Consensus 259 la~af-~~~~~~~l~~~~~~ 277 (290)
+++.| ..|++++..++.+.
T Consensus 697 l~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 697 LCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred HHHHHHHCCChHHHHHHHHH
Confidence 99998 57887776666554
No 76
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=81.00 E-value=1.4 Score=32.39 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=38.4
Q ss_pred ccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 022902 153 AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHN 202 (290)
Q Consensus 153 ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ 202 (290)
.+.|+.|+.+.++-+-.-+... .-.|.|.-|.+|..+++|++|.++++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4678899998888764433211 566888899999999999999999988
No 77
>PRK15331 chaperone protein SicA; Provisional
Probab=80.77 E-value=2.3 Score=36.52 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=41.0
Q ss_pred HHHHHHHHccCchhhhhcccccc-cccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhccCcc
Q 022902 145 EFLQLCLLAKCYKAGLSVLEDDI-YEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMS 209 (290)
Q Consensus 145 ~ll~lcL~ak~y~~Al~vl~~~i-~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~P~~ 209 (290)
-|--.|-..|.|+.|+..-.... ...+.+ +-+||+|-+|..+++-+.|.++|+.|+.-|..
T Consensus 76 GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp----~p~f~agqC~l~l~~~~~A~~~f~~a~~~~~~ 137 (165)
T PRK15331 76 GLAAVCQLKKQFQKACDLYAVAFTLLKNDY----RPVFFTGQCQLLMRKAAKARQCFELVNERTED 137 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCC----CccchHHHHHHHhCCHHHHHHHHHHHHhCcch
Confidence 34444555566666665543321 111111 12799999999999999999999999998874
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=80.54 E-value=3.5 Score=38.12 Aligned_cols=92 Identities=11% Similarity=0.047 Sum_probs=71.6
Q ss_pred HhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHh
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK 191 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k 191 (290)
....+....++..+..|+.. +|.. ...|..+-..+...+.|+.|+..+++-+ ++++ +.-..++..|.++...+
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l-~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al-~l~P--~~~~a~~~lg~~l~~~g 146 (296)
T PRK11189 74 YDSLGLRALARNDFSQALAL-RPDM---ADAYNYLGIYLTQAGNFDAAYEAFDSVL-ELDP--TYNYAYLNRGIALYYGG 146 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHc-CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCC--CCHHHHHHHHHHHHHCC
Confidence 34556666678888888764 5543 5677889999999999999999988876 3432 23345678999999999
Q ss_pred cHHHHHHHHHHhhc-cCccc
Q 022902 192 RFRKALELLHNVVT-APMSS 210 (290)
Q Consensus 192 ~~~~A~~~l~~ais-~P~~~ 210 (290)
+|++|.+.|+.++. .|...
T Consensus 147 ~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 147 RYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCH
Confidence 99999999999998 78753
No 79
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=80.30 E-value=9.4 Score=40.25 Aligned_cols=99 Identities=13% Similarity=0.101 Sum_probs=71.2
Q ss_pred HhHhhhccccccHHHHHHHHHhhCCCC-CCchhhHHHHHHHHHHccCchhhhhcccccccccC-----------Cch-hH
Q 022902 110 DQVLLLEAPIRGVGPMLTAIRKIQSST-EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN-----------LPR-DF 176 (290)
Q Consensus 110 ~~~~~~~~p~~~i~~L~~Ai~r~~~~~-~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~-----------~~~-~~ 176 (290)
......++|..++..++.++. .+|.. ..--..+..|....+..+.++.|+..+++-.-..| .+. +.
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~-~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFY-HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhh-cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 344456778888888888664 44432 11123456667777899999999998775332211 123 45
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 177 FLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 177 l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
+...+.-|.++...+++++|.+.|+.++. .|.+
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n 392 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN 392 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 77888999999999999999999999997 8986
No 80
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=80.09 E-value=4.6 Score=39.28 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=57.6
Q ss_pred CCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 137 EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 137 ~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
...++.|..+.-.+++-+.|+.|+.--++-.. .++ ...-=.|=.|++++++.+|+.|...|+.|+. -|.+
T Consensus 254 ~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe-~~~--~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 254 ALKLACHLNLAACYLKLKEYKEAIESCNKVLE-LDP--NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh-cCC--CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 44678999999999999999999887766542 222 2344567799999999999999999999998 8996
No 81
>PLN03077 Protein ECB2; Provisional
Probab=80.04 E-value=11 Score=40.12 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=42.1
Q ss_pred HHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc---cCccchhHHHHHHHH
Q 022902 144 PEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT---APMSSINAIAVEAYK 220 (290)
Q Consensus 144 ~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais---~P~~~~s~i~veAyK 220 (290)
+.|+..+.+.+.++.|..+++.. ..|...|--. ...|+..+++++|.+.|+.... .|....-..++.||-
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~l-I~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNIL-LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 35667777788888887777654 1233333222 2246778889999999998775 355333333344443
No 82
>PRK14574 hmsH outer membrane protein; Provisional
Probab=79.97 E-value=8.1 Score=41.34 Aligned_cols=98 Identities=7% Similarity=-0.041 Sum_probs=74.0
Q ss_pred HhhhccccccHHHHHHHHHhhCCC-CCCchhh-HHHHHHHHHHccCchhhhhcccccccccC------------CchhHH
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSS-TEHLTTL-HPEFLQLCLLAKCYKAGLSVLEDDIYEIN------------LPRDFF 177 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~-~~~LTs~-H~~ll~lcL~ak~y~~Al~vl~~~i~~i~------------~~~~~l 177 (290)
....++|.+++..+++++.--.+. ....... +..|.-..+.+..|+.|..++++-.-..| +..|..
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 334677888888888886532111 1111211 46789999999999999999987543222 256889
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 178 ~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
++...-+++++..++..+|.+.++..+. +|++
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n 449 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN 449 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999986 9996
No 83
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=79.44 E-value=3.1 Score=35.50 Aligned_cols=58 Identities=12% Similarity=0.039 Sum_probs=41.4
Q ss_pred HHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 149 LCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 149 lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
+-...+.|+.|..+..--.. ++ -.+.+|+|--|+++=.+|+|++|.++|..+++ .|..
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~-~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTI-YD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHH-hC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 44566777777666554321 12 23688999999999999999999999999987 5643
No 84
>PRK14574 hmsH outer membrane protein; Provisional
Probab=78.96 E-value=4.5 Score=43.25 Aligned_cols=84 Identities=8% Similarity=-0.108 Sum_probs=40.1
Q ss_pred hhhccccccHHHHHHHHHhhCCCCCCchhhHHHH--HHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHH
Q 022902 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEF--LQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (290)
Q Consensus 113 ~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~l--l~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~ 190 (290)
...++...++..+..++ +|++ .+.+..+ .+++...|.|+.|+.++++-+-.-|...+.+ +.-+++|...
T Consensus 79 ~~~G~~~~A~~~~eka~---~p~n---~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l---~gLa~~y~~~ 149 (822)
T PRK14574 79 GWAGRDQEVIDVYERYQ---SSMN---ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLI---SGMIMTQADA 149 (822)
T ss_pred HHcCCcHHHHHHHHHhc---cCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHhhc
Confidence 34444545555555555 3322 1222333 4455555666666665555543222222222 1225555666
Q ss_pred hcHHHHHHHHHHhhc
Q 022902 191 KRFRKALELLHNVVT 205 (290)
Q Consensus 191 k~~~~A~~~l~~ais 205 (290)
++.++|++.++.++.
T Consensus 150 ~q~~eAl~~l~~l~~ 164 (822)
T PRK14574 150 GRGGVVLKQATELAE 164 (822)
T ss_pred CCHHHHHHHHHHhcc
Confidence 666666666666554
No 85
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=78.90 E-value=28 Score=36.54 Aligned_cols=86 Identities=10% Similarity=-0.026 Sum_probs=43.3
Q ss_pred ccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHH
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRK 195 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~ 195 (290)
..|.-++.-+..-+++|.. .+..|-.|.+.-...+.|+.|+.+++.-.-.-| |+......-+.|...++++++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~----~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P---d~~~a~~~~a~~L~~~~~~ee 138 (694)
T PRK15179 66 HKPAAALPELLDYVRRYPH----TELFQVLVARALEAAHRSDEGLAVWRGIHQRFP---DSSEAFILMLRGVKRQQGIEA 138 (694)
T ss_pred cchHhhHHHHHHHHHhccc----cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHhccHHH
Confidence 3344444445555554432 244555555555555555555555555432212 445555555555555555555
Q ss_pred HHHHHHHhhc-cCc
Q 022902 196 ALELLHNVVT-APM 208 (290)
Q Consensus 196 A~~~l~~ais-~P~ 208 (290)
|+.+.++++. .|.
T Consensus 139 A~~~~~~~l~~~p~ 152 (694)
T PRK15179 139 GRAEIELYFSGGSS 152 (694)
T ss_pred HHHHHHHHhhcCCC
Confidence 5555555554 444
No 86
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=78.67 E-value=3.1 Score=38.25 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=48.9
Q ss_pred HHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 149 LCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 149 lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
+-+..+.|+.|...++.=|-..|.....-.-+|+-|.+|...++|++|...|+.++. .|.+
T Consensus 152 l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 152 LVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 334568999999998887766665443345568999999999999999999999997 7864
No 87
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=77.60 E-value=8.8 Score=33.03 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=82.1
Q ss_pred hhhHHHHHHHHHhcCChhhhhhhhHhHHHHHHHHHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHcc
Q 022902 75 ANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAK 154 (290)
Q Consensus 75 ~~~l~~~v~~fl~~f~~~Qlr~a~~~~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak 154 (290)
.+.+=..+.+.-++..-+.+|-+-.........+++ -..+++.... ++.+..++++.--+...++|.++.-+
T Consensus 16 ~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd-------~~~A~k~y~~-~~~~~~~~~~~id~~l~~irv~i~~~ 87 (177)
T PF10602_consen 16 LEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGD-------LEEALKAYSR-ARDYCTSPGHKIDMCLNVIRVAIFFG 87 (177)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHH-HhhhcCCHHHHHHHHHHHHHHHHHhC
Confidence 334444455555566666676544333322222222 2235566655 44455566777778889999999999
Q ss_pred CchhhhhcccccccccCC---chhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcc
Q 022902 155 CYKAGLSVLEDDIYEINL---PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA 206 (290)
Q Consensus 155 ~y~~Al~vl~~~i~~i~~---~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~ 206 (290)
+++.+...+++.---+.. ..---+.--|.|+.+++.++|.+|-..|-.+++.
T Consensus 88 d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 88 DWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred CHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 999999999885322222 2223457889999999999999999999998863
No 88
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=77.58 E-value=32 Score=27.90 Aligned_cols=105 Identities=12% Similarity=0.093 Sum_probs=63.0
Q ss_pred hhhhhhHhHHHHHHHHHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCC
Q 022902 93 QIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL 172 (290)
Q Consensus 93 Qlr~a~~~~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~ 172 (290)
|..-+...|..+...+. .+.+...-..+...+.. .|++..-......+.+.+...+.|+.|...++.-+-.-+.
T Consensus 7 ~~~~a~~~y~~~~~~~~-----~~~~~~~~~~~~~l~~~-~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d 80 (145)
T PF09976_consen 7 QAEQASALYEQALQALQ-----AGDPAKAEAAAEQLAKD-YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD 80 (145)
T ss_pred HHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 34445556666555442 22222222223333333 3333222344555778999999999999999886654322
Q ss_pred chhHHHHHHHHHHHHHHHhcHHHHHHHHHHh
Q 022902 173 PRDFFLYCYYGGMIFIGQKRFRKALELLHNV 203 (290)
Q Consensus 173 ~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~a 203 (290)
+.-.-.-.+.-+.|++.+++|++|+..|+.+
T Consensus 81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~ 111 (145)
T PF09976_consen 81 PELKPLARLRLARILLQQGQYDEALATLQQI 111 (145)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 2111223445789999999999999999773
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=77.50 E-value=86 Score=31.79 Aligned_cols=148 Identities=12% Similarity=0.094 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhHhhhccccccHHHHHHHHHhhC--CCC-C-CchhhHHHHHHHHHHccCchhhhhcccccccccCC----
Q 022902 101 FINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQ--SST-E-HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL---- 172 (290)
Q Consensus 101 ~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~--~~~-~-~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~---- 172 (290)
+......+.......+....++..++.|+..+. |.. + ++--+=+.+-++.+..+.|+.|.++..+-|.-...
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC
Confidence 333333444444456667778888888888775 322 2 45556678889999999999999988887653321
Q ss_pred -chhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhhh
Q 022902 173 -PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN 251 (290)
Q Consensus 173 -~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k~ 251 (290)
...+-....--|--|--+|++++|...|+.++. |+ +. -|- . +|.
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~--------i~---------~~---~g~---~-----~~~------- 448 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD--------IM---------KL---CGP---D-----HPD------- 448 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH--------HH---------HH---hCC---C-----CCc-------
Confidence 222333444556667888999999999888663 11 11 121 1 122
Q ss_pred cchhHHHHHHHhc-CCChHHHHHHHHHhHHhhh
Q 022902 252 FSQPYMELVNTYN-TGKIVELETYVQTNREKFE 283 (290)
Q Consensus 252 ~~~pY~~la~af~-~~~~~~l~~~~~~~~~~f~ 283 (290)
...+|..|+.+|+ .|+.++-.++.++-...++
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVLNARE 481 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 2357888888885 5888877777666544443
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=77.26 E-value=34 Score=31.57 Aligned_cols=81 Identities=11% Similarity=0.014 Sum_probs=53.1
Q ss_pred HHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhh
Q 022902 125 MLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVV 204 (290)
Q Consensus 125 L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ai 204 (290)
...++....+........+..+...+...+.++.|...+++.+- .. +.+ ...++.-|.|+..+++|++|..+++.++
T Consensus 99 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~-~~-p~~-~~~~~~la~i~~~~g~~~eA~~~l~~~l 175 (355)
T cd05804 99 VARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE-LN-PDD-AWAVHAVAHVLEMQGRFKEGIAFMESWR 175 (355)
T ss_pred HHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-CCC-cHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 33444433333332334445556677888899999888888764 22 222 3445556889999999999999999998
Q ss_pred c-cCc
Q 022902 205 T-APM 208 (290)
Q Consensus 205 s-~P~ 208 (290)
. .|.
T Consensus 176 ~~~~~ 180 (355)
T cd05804 176 DTWDC 180 (355)
T ss_pred hccCC
Confidence 6 454
No 91
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=76.52 E-value=28 Score=36.05 Aligned_cols=93 Identities=11% Similarity=0.069 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHH
Q 022902 100 KFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLY 179 (290)
Q Consensus 100 ~~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y 179 (290)
.|..+...+.+ .+....|...+...+.+ ...+. ..+.+.|+..+.+.+.++.|..+++.-. ..|...|
T Consensus 327 t~~~ll~a~~~----~g~~~~a~~i~~~m~~~-g~~~d--~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~ 394 (697)
T PLN03081 327 TFSIMIRIFSR----LALLEHAKQAHAGLIRT-GFPLD--IVANTALVDLYSKWGRMEDARNVFDRMP-----RKNLISW 394 (697)
T ss_pred HHHHHHHHHHh----ccchHHHHHHHHHHHHh-CCCCC--eeehHHHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeH
Confidence 34455544443 23334455555555544 22222 2344778889999999999999988643 1223222
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 180 CYYGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 180 ~yygG~i~~~~k~~~~A~~~l~~ais 205 (290)
-- -...|+..+++++|.+.|+....
T Consensus 395 n~-lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 395 NA-LIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HH-HHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 12246788899999999998775
No 92
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=76.32 E-value=5.4 Score=39.58 Aligned_cols=67 Identities=13% Similarity=0.019 Sum_probs=54.7
Q ss_pred chhhHHHHHHHHHHccCchhhhhcccccccccCCchh-HHHHHHHHHHHHHHHhcHHHHHHHHHHhhcc
Q 022902 139 LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRD-FFLYCYYGGMIFIGQKRFRKALELLHNVVTA 206 (290)
Q Consensus 139 LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~-~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~ 206 (290)
....|..+-..+...+.|+.|+..+++-+- +++... .-.-+|.-|++|+.+++.++|+++|+.|+..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe-L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE-LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467888999999999999999999999773 332211 1134799999999999999999999999974
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=75.94 E-value=86 Score=31.82 Aligned_cols=138 Identities=12% Similarity=0.081 Sum_probs=86.0
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccc-cccccCC-----chhHHHHHHHHHHHHH
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLED-DIYEINL-----PRDFFLYCYYGGMIFI 188 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~-~i~~i~~-----~~~~l~Y~yygG~i~~ 188 (290)
.|....|...+..| +.+|.....+- +-.++-.|+++.++.|..++.. ..-+.++ --+++=|..-.|..|.
T Consensus 241 ~G~~~~Aa~~~~~A-r~LD~~DRyiN---sK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 241 AGDLKEAAEAMDEA-RELDLADRYIN---SKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred CCCHHHHHHHHHHH-HhCChhhHHHH---HHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 34444455555544 66788776666 6667899999999999988765 2222232 3466778888999999
Q ss_pred HHhcHHHHHHHHHHhhccCcc---chhHHHHHHHHHHH---HHHHHhcCCCCCCCCCCCCHHHHHhhhhcchhHHHHHH
Q 022902 189 GQKRFRKALELLHNVVTAPMS---SINAIAVEAYKKYI---LVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVN 261 (290)
Q Consensus 189 ~~k~~~~A~~~l~~ais~P~~---~~s~i~veAyKK~i---Lv~Ll~~G~~~~~lPk~~s~~~~r~~k~~~~pY~~la~ 261 (290)
.+++|..|+..|..+..+=.. .--.+.--+..|.- -|.+|..+.-. +.+|.-.|..+...+-|.++-+
T Consensus 317 r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l-----~~~~~y~raa~~ai~iYl~l~d 390 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKL-----RSHPFYRRAAKGAIRIYLELHD 390 (517)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998875221 11222222333332 23333332222 2356666666666666766653
No 94
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=75.56 E-value=3.9 Score=28.24 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 181 YYGGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 181 yygG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
|--|+.+...++|++|...|+.++. .|.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~ 29 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPD 29 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 4568999999999999999999997 676
No 95
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=75.52 E-value=69 Score=33.21 Aligned_cols=85 Identities=13% Similarity=0.081 Sum_probs=45.3
Q ss_pred hhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhc
Q 022902 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (290)
Q Consensus 113 ~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~ 192 (290)
.+.++...++..+..|+.. +|.. ...|..+.+++...+.++.|...+++-+...+.+.+ .++ .+..+...++
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l-~P~~---~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~---a~~-~~~~l~~~g~ 192 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA-FSGN---SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD---MIA-TCLSFLNKSR 192 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH---HHH-HHHHHHHcCC
Confidence 3445555667777776653 4432 445666777777777777777766643221121111 111 1233555566
Q ss_pred HHHHHHHHHHhhc
Q 022902 193 FRKALELLHNVVT 205 (290)
Q Consensus 193 ~~~A~~~l~~ais 205 (290)
|++|...++.++.
T Consensus 193 ~~eA~~~~~~~l~ 205 (656)
T PRK15174 193 LPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666555554
No 96
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=74.10 E-value=7.9 Score=32.99 Aligned_cols=76 Identities=11% Similarity=0.080 Sum_probs=57.3
Q ss_pred HHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHh
Q 022902 124 PMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNV 203 (290)
Q Consensus 124 ~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~a 203 (290)
-+...+.++||.. ....--|--.|-..+.|..|+..-.+-+. ++ .+.-+-++|.|.++..+++-+.|..+|+.|
T Consensus 56 ~~f~~L~~~Dp~~---~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-L~--~ddp~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 56 RLFQLLTIYDAWS---FDYWFRLGECCQAQKHWGEAIYAYGRAAQ-IK--IDAPQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHHHhCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455566678754 33445555667778899999888877653 22 255677899999999999999999999999
Q ss_pred hc
Q 022902 204 VT 205 (290)
Q Consensus 204 is 205 (290)
|.
T Consensus 130 i~ 131 (157)
T PRK15363 130 VR 131 (157)
T ss_pred HH
Confidence 97
No 97
>PRK12370 invasion protein regulator; Provisional
Probab=73.92 E-value=16 Score=36.99 Aligned_cols=84 Identities=10% Similarity=-0.024 Sum_probs=50.2
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHH
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR 194 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~ 194 (290)
.++...++..++.|+. ++|+. ...|..+...+...+.++.|+..+++-+- +++. +. .++++.+.++..+++|+
T Consensus 351 ~g~~~~A~~~~~~Al~-l~P~~---~~a~~~lg~~l~~~G~~~eAi~~~~~Al~-l~P~-~~-~~~~~~~~~~~~~g~~e 423 (553)
T PRK12370 351 HSEYIVGSLLFKQANL-LSPIS---ADIKYYYGWNLFMAGQLEEALQTINECLK-LDPT-RA-AAGITKLWITYYHTGID 423 (553)
T ss_pred ccCHHHHHHHHHHHHH-hCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCC-Ch-hhHHHHHHHHHhccCHH
Confidence 3455557777777765 35543 34567777777777888888777777542 2221 11 12223333455567777
Q ss_pred HHHHHHHHhhc
Q 022902 195 KALELLHNVVT 205 (290)
Q Consensus 195 ~A~~~l~~ais 205 (290)
+|..+++.++.
T Consensus 424 eA~~~~~~~l~ 434 (553)
T PRK12370 424 DAIRLGDELRS 434 (553)
T ss_pred HHHHHHHHHHH
Confidence 77777777765
No 98
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=73.84 E-value=5 Score=38.36 Aligned_cols=60 Identities=8% Similarity=0.006 Sum_probs=49.6
Q ss_pred HHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 147 LQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 147 l~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.+.++..+.|+.|+..+++.|-.-+ +...+++..|.+|..+++|++|+..++.++. .|..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P---~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~ 69 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP---NNAELYADRAQANIKLGNFTEAVADANKAIELDPSL 69 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 4577889999999999988874322 3456788999999999999999999999998 6764
No 99
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.82 E-value=21 Score=35.10 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=46.8
Q ss_pred chhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCH
Q 022902 173 PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSS 243 (290)
Q Consensus 173 ~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~ 243 (290)
..|...+|+-+|.+-.+.|.|.||.++-..+ +-.+..+=-|++|+ |-.|.+. .++.|++.
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~---------khvInm~ln~i~VS-I~~~nw~-hv~sy~~~ 212 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSA---------KHVINMCLNLILVS-IYMGNWG-HVLSYISK 212 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcch---------HHHHHHHHHHHHHH-Hhhcchh-hhhhHHHH
Confidence 4688888888999999999999999986543 23445566799999 6678888 88877654
No 100
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=71.18 E-value=26 Score=38.32 Aligned_cols=83 Identities=8% Similarity=-0.053 Sum_probs=63.1
Q ss_pred ccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHH
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRK 195 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~ 195 (290)
+....++..++.|+. .+|.. ..+|..+.+..+..+.++.|+..+.+-+- .+ + +...|+-..|.| ++|++
T Consensus 58 Gd~~~A~~~l~~Al~-~dP~n---~~~~~~LA~~yl~~g~~~~A~~~~~kAv~-ld-P-~n~~~~~~La~i----~~~~k 126 (987)
T PRK09782 58 NDEATAIREFEYIHQ-QVPDN---IPLTLYLAEAYRHFGHDDRARLLLEDQLK-RH-P-GDARLERSLAAI----PVEVK 126 (987)
T ss_pred CCHHHHHHHHHHHHH-hCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cC-c-ccHHHHHHHHHh----ccChh
Confidence 444467888888865 47755 77889999999999999999999998773 33 2 333333333544 99999
Q ss_pred HHHHHHHhhc-cCcc
Q 022902 196 ALELLHNVVT-APMS 209 (290)
Q Consensus 196 A~~~l~~ais-~P~~ 209 (290)
|...++..+. -|.+
T Consensus 127 A~~~ye~l~~~~P~n 141 (987)
T PRK09782 127 SVTTVEELLAQQKAC 141 (987)
T ss_pred HHHHHHHHHHhCCCC
Confidence 9999999997 8984
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=71.14 E-value=26 Score=30.45 Aligned_cols=83 Identities=10% Similarity=0.170 Sum_probs=61.0
Q ss_pred cHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhc--HHHHHH
Q 022902 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR--FRKALE 198 (290)
Q Consensus 121 ~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~--~~~A~~ 198 (290)
.+..+++++. .+|.. ...+..+-+.++..+.|+.|+..+++-+- +. +.+.-.|+.||...+...++ +++|..
T Consensus 58 ~i~~l~~~L~-~~P~~---~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~-l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 58 QLQALQDKIR-ANPQN---SEQWALLGEYYLWRNDYDNALLAYRQALQ-LR-GENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred HHHHHHHHHH-HCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 4556666654 35544 55789999999999999999999998763 22 34444555566655677777 599999
Q ss_pred HHHHhhc-cCcc
Q 022902 199 LLHNVVT-APMS 209 (290)
Q Consensus 199 ~l~~ais-~P~~ 209 (290)
.|+.++. -|..
T Consensus 132 ~l~~al~~dP~~ 143 (198)
T PRK10370 132 MIDKALALDANE 143 (198)
T ss_pred HHHHHHHhCCCC
Confidence 9999998 7775
No 102
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=70.63 E-value=14 Score=40.92 Aligned_cols=91 Identities=5% Similarity=-0.047 Sum_probs=64.6
Q ss_pred hHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHH
Q 022902 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (290)
Q Consensus 111 ~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~ 190 (290)
...+.+....++..++.++.. +|.. ...+..+.+.....+.++.|+..+++-+ ... .+.....+.-|.++..+
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~-~P~~---~~a~~~la~~~~~~g~~~eA~~~l~~ll-~~~--p~~~~~~~~la~~~~~~ 684 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTR-EPGN---ADARLGLIEVDIAQGDLAAARAQLAKLP-ATA--NDSLNTQRRVALAWAAL 684 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHh-ccC--CCChHHHHHHHHHHHhC
Confidence 344456666677777777765 5433 4567778888888899999988888543 221 13344556678899999
Q ss_pred hcHHHHHHHHHHhhc-cCc
Q 022902 191 KRFRKALELLHNVVT-APM 208 (290)
Q Consensus 191 k~~~~A~~~l~~ais-~P~ 208 (290)
+++++|...|+.++. .|.
T Consensus 685 g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 685 GDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred CCHHHHHHHHHHHhhhCcc
Confidence 999999999999997 443
No 103
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=70.48 E-value=24 Score=32.19 Aligned_cols=87 Identities=11% Similarity=0.028 Sum_probs=62.3
Q ss_pred ccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHH
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRK 195 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~ 195 (290)
+++..+-..|..|+. +||+. --.|..+...+-.-+..+.|-+-..+.+-.=|...||+.= | |--.+++|+|++
T Consensus 49 gd~~~A~~nlekAL~-~DPs~---~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN--Y-G~FLC~qg~~~e 121 (250)
T COG3063 49 GDYAQAKKNLEKALE-HDPSY---YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN--Y-GAFLCAQGRPEE 121 (250)
T ss_pred CCHHHHHHHHHHHHH-hCccc---HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh--h-hHHHHhCCChHH
Confidence 556667777888875 58755 2347777777777787777776666655433446677664 3 445678889999
Q ss_pred HHHHHHHhhccCcc
Q 022902 196 ALELLHNVVTAPMS 209 (290)
Q Consensus 196 A~~~l~~ais~P~~ 209 (290)
|..+|+.|+-.|.-
T Consensus 122 A~q~F~~Al~~P~Y 135 (250)
T COG3063 122 AMQQFERALADPAY 135 (250)
T ss_pred HHHHHHHHHhCCCC
Confidence 99999999999984
No 104
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=70.31 E-value=43 Score=29.04 Aligned_cols=95 Identities=15% Similarity=0.059 Sum_probs=66.5
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHh--
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK-- 191 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k-- 191 (290)
+.++...++..+...+.+++.++ ......-.+...++..+.|..|...++.=|-..|.+...=.=+|..|+++..+.
T Consensus 17 ~~g~y~~Ai~~f~~l~~~~P~s~-~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~ 95 (203)
T PF13525_consen 17 QQGDYEEAIKLFEKLIDRYPNSP-YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPG 95 (203)
T ss_dssp HCT-HHHHHHHHHHHHHH-TTST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCcc
Confidence 34666678888998888876544 455667788999999999999999999888777764444344667788766543
Q ss_pred ---------cHHHHHHHHHHhhc-cCcc
Q 022902 192 ---------RFRKALELLHNVVT-APMS 209 (290)
Q Consensus 192 ---------~~~~A~~~l~~ais-~P~~ 209 (290)
...+|...|+..|. .|.+
T Consensus 96 ~~~~~~D~~~~~~A~~~~~~li~~yP~S 123 (203)
T PF13525_consen 96 ILRSDRDQTSTRKAIEEFEELIKRYPNS 123 (203)
T ss_dssp HH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred chhcccChHHHHHHHHHHHHHHHHCcCc
Confidence 34588999999996 8874
No 105
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=69.38 E-value=58 Score=36.08 Aligned_cols=31 Identities=13% Similarity=-0.022 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 179 YCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 179 Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.++.-|.++..++++++|.++|+.++. .|.+
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~ 636 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTREPGN 636 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 456678888999999999999999997 6764
No 106
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=69.22 E-value=10 Score=39.10 Aligned_cols=105 Identities=11% Similarity=0.161 Sum_probs=65.5
Q ss_pred hhhhHhHHHHHHHHHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCch
Q 022902 95 RYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPR 174 (290)
Q Consensus 95 r~a~~~~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~ 174 (290)
|..|+.|..+...+.-. +...++|...+.||+ +||. ++=.|+++=........|+-|.+-..+.+- + .-
T Consensus 418 ~~sPesWca~GNcfSLQ----kdh~~Aik~f~RAiQ-ldp~---faYayTLlGhE~~~~ee~d~a~~~fr~Al~-~--~~ 486 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQ----KDHDTAIKCFKRAIQ-LDPR---FAYAYTLLGHESIATEEFDKAMKSFRKALG-V--DP 486 (638)
T ss_pred CCCcHHHHHhcchhhhh----hHHHHHHHHHHHhhc-cCCc---cchhhhhcCChhhhhHHHHhHHHHHHhhhc-C--Cc
Confidence 34444554444433322 233446666666765 2442 344455555555555566666555555442 1 23
Q ss_pred hHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCccc
Q 022902 175 DFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (290)
Q Consensus 175 ~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~~ 210 (290)
++.+=.|=.||||..+.+++.|...|+.|+. -|.+.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns 523 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS 523 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch
Confidence 5667788889999999999999999999997 68863
No 107
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=68.91 E-value=53 Score=34.73 Aligned_cols=122 Identities=13% Similarity=0.101 Sum_probs=74.8
Q ss_pred hHHHH-HHHHHhcCChhhhhhhhHhHHHHH---HHHH----HhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHH
Q 022902 77 TLVPI-IARFITSCSAEQIRYVPEKFINVC---KRYK----DQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQ 148 (290)
Q Consensus 77 ~l~~~-v~~fl~~f~~~Qlr~a~~~~~~l~---~~~~----~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~ 148 (290)
.+|.. +.-|...-++.+.+.|-.+-+..+ +.+. ......++-.-|......|+. +||+. . +.-..+.+
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~-ldP~h--v-~s~~Ala~ 726 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA-LDPDH--V-PSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh-cCCCC--c-HHHHHHHH
Confidence 34444 445777778888886655433222 2211 122223333335555666643 46644 2 33345667
Q ss_pred HHHHccCchhhhh--cccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 149 LCLLAKCYKAGLS--VLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 149 lcL~ak~y~~Al~--vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais 205 (290)
+.+.-++-.-|.. ++.... .+| -+..+-.||-|+++..+++.++|-+||..|+.
T Consensus 727 ~lle~G~~~la~~~~~L~dal-r~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDAL-RLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHH-hhC--CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 7777777666665 444432 333 24678899999999999999999999999996
No 108
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.51 E-value=42 Score=33.94 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=47.8
Q ss_pred HHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 143 HPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 143 H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
|..++.+.++.+.++.+....+..+-.+|....+.. |-|-|.+-+++|++|...|..||. .|.
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~---~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYN---LFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH---HHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 455566666777788888888888777775333333 337899999999999999999998 776
No 109
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=67.22 E-value=77 Score=32.07 Aligned_cols=64 Identities=11% Similarity=0.115 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 141 s~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
-.|..+--.++..+.++.|...+++.+- .++ + ...|.+-|.++...++.++|.++|++|+. -|.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~-L~p--s-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAID-LEM--S-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCC--C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4577776777788999999999999763 332 2 46888899999999999999999999997 676
No 110
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.99 E-value=1.2e+02 Score=28.90 Aligned_cols=162 Identities=10% Similarity=0.215 Sum_probs=98.4
Q ss_pred cccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhh------hcccccccccCCchhHHHHHHHHHHHHHHHhc
Q 022902 119 IRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGL------SVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (290)
Q Consensus 119 ~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al------~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~ 192 (290)
+.-|.|+..-+.|+|.-.+ |+.+|..=-+.+..-++...+- +.+...++ .++.-..+-....|+..+--++
T Consensus 145 lalIn~ll~ElKk~DDK~~-Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~Y--CPpqlqa~lDL~sGIlhcdd~d 221 (421)
T COG5159 145 LALINPLLHELKKYDDKIN-LITVHLLESKVYHEIRNVSKSKASLTAARTLANSAY--CPPQLQAQLDLLSGILHCDDRD 221 (421)
T ss_pred HHHHHHHHHHHHhhcCccc-eeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccC--CCHHHHHHHHHhccceeecccc
Confidence 3357889999999997554 8888887666666655554433 33333332 3355667777889999999999
Q ss_pred HHHHHHHHHHhhcc-CccchhHHHHHHHHHHHHHHHHhcCCCCCCCC-CCCCHHHHHhhhh-cchhHHHHHHHhcCCChH
Q 022902 193 FRKALELLHNVVTA-PMSSINAIAVEAYKKYILVSLIHHGQFSSTLP-KYTSSAAQRNLKN-FSQPYMELVNTYNTGKIV 269 (290)
Q Consensus 193 ~~~A~~~l~~ais~-P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lP-k~~s~~~~r~~k~-~~~pY~~la~af~~~~~~ 269 (290)
|.-|..+|--+.-- ..-....=..... ||.|+|-|.-..+. +.- -.+.....+++.. ....-..+++||.+++..
T Consensus 222 yktA~SYF~Ea~Egft~l~~d~kAc~sL-kYmlLSkIMlN~~~-evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~ 299 (421)
T COG5159 222 YKTASSYFIEALEGFTLLKMDVKACVSL-KYMLLSKIMLNRRE-EVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLK 299 (421)
T ss_pred chhHHHHHHHHHhccccccchHHHHHHH-HHHHHHHHHHhhHH-HHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHh
Confidence 99999998887742 1111111111112 44444444322221 110 0011112222222 334566799999999999
Q ss_pred HHHHHHHHhHHhhhcc
Q 022902 270 ELETYVQTNREKFESV 285 (290)
Q Consensus 270 ~l~~~~~~~~~~f~~D 285 (290)
.|......++...-.|
T Consensus 300 df~~aL~qY~~el~~D 315 (421)
T COG5159 300 DFSDALAQYSDELHQD 315 (421)
T ss_pred hHHHHHHHhhHHhccC
Confidence 9999999988776665
No 111
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=66.93 E-value=42 Score=35.05 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=82.9
Q ss_pred hccccccHHHHHHHHHhhCCCC--CCchhhHHHHHHHHHHccCchhhhhccccc-ccccCCchhHHHHHHHHHHHHHHHh
Q 022902 115 LEAPIRGVGPMLTAIRKIQSST--EHLTTLHPEFLQLCLLAKCYKAGLSVLEDD-IYEINLPRDFFLYCYYGGMIFIGQK 191 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~--~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~-i~~i~~~~~~l~Y~yygG~i~~~~k 191 (290)
.++|...|.+...||++.||.. +.++.+-..|.+++=..+..+.|-.++++. .+.+....|...-+.--|-.=.-.+
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 3456677999999999999963 556667778889999999999999999985 4455555565554444456667789
Q ss_pred cHHHHHHHHHHhhccCccch-------hHHHHHHHHHHHHHHH
Q 022902 192 RFRKALELLHNVVTAPMSSI-------NAIAVEAYKKYILVSL 227 (290)
Q Consensus 192 ~~~~A~~~l~~ais~P~~~~-------s~i~veAyKK~iLv~L 227 (290)
+++.|+.+.+.|...|.... -..+.--||-+.+-+.
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 99999999999999998522 2344445555555443
No 112
>PLN03218 maturation of RBCL 1; Provisional
Probab=66.87 E-value=44 Score=36.92 Aligned_cols=77 Identities=17% Similarity=0.165 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc---cCccchhHHHHHH
Q 022902 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT---APMSSINAIAVEA 218 (290)
Q Consensus 142 ~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais---~P~~~~s~i~veA 218 (290)
....++..|.+.+.++.|..+++.-+-. ...-+...| -.-.-.|+..+++++|.+.|+.... .|....-..++.+
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~~ty-nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~g 728 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSY-SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3456667777777777777766553210 001122222 2223456777888888888887764 3543344455555
Q ss_pred HH
Q 022902 219 YK 220 (290)
Q Consensus 219 yK 220 (290)
|-
T Consensus 729 y~ 730 (1060)
T PLN03218 729 LC 730 (1060)
T ss_pred HH
Confidence 53
No 113
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.97 E-value=1e+02 Score=28.73 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 178 ~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
+=..+.+-||...++|++|..|+|.++- .|.+
T Consensus 155 EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n 187 (289)
T KOG3060|consen 155 EAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN 187 (289)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc
Confidence 3446778899999999999999999996 7874
No 114
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=65.64 E-value=36 Score=28.50 Aligned_cols=93 Identities=12% Similarity=0.077 Sum_probs=69.0
Q ss_pred ccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhc---
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR--- 192 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~--- 192 (290)
++-..++.-+...-.|++-+ ..-.-.-..+.....+.+.|..|....++=|---|++.++=-=+|.-|+++..+.+
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~ 102 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSL 102 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHH
Confidence 44455778888888887654 33455667888999999999999999888653223333332235678999999988
Q ss_pred ------------HHHHHHHHHHhhc-cCcc
Q 022902 193 ------------FRKALELLHNVVT-APMS 209 (290)
Q Consensus 193 ------------~~~A~~~l~~ais-~P~~ 209 (290)
-.+|+.-|+.+|+ .|.+
T Consensus 103 ~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 103 QSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred hhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 8999999999997 8874
No 115
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=65.53 E-value=11 Score=34.14 Aligned_cols=65 Identities=11% Similarity=-0.050 Sum_probs=49.8
Q ss_pred HHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 145 EFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 145 ~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.-...++..+.|+.|...++.-+-..|.+...-.=.|.-|.+|-.+++|++|...|+..+. .|.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 4567778889999999988876554443322222256888999999999999999999997 8885
No 116
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=64.19 E-value=15 Score=36.38 Aligned_cols=83 Identities=19% Similarity=0.260 Sum_probs=52.4
Q ss_pred CCchhhHHHHHHHHHHccCchhhhhccccccc-ccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc--cCc-cchh
Q 022902 137 EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIY-EINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT--APM-SSIN 212 (290)
Q Consensus 137 ~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~-~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais--~P~-~~~s 212 (290)
..+.+.|..++|.||..+.++.++.+|.+++- .| =-|...|++.-- .++..++|+.|.......+- ... ..+.
T Consensus 100 ~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi--F~D~~s~n~Lmd-~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~ 176 (429)
T PF10037_consen 100 YLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI--FPDNFSFNLLMD-HFLKKGNYKSAAKVATEMMLQEEFDNPSTQ 176 (429)
T ss_pred cccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc--CCChhhHHHHHH-HHhhcccHHHHHHHHHHHHHhhccCCchHH
Confidence 45677788999999999999999999999753 11 012222222221 25678999999877665542 222 2344
Q ss_pred HHHHHHHHHH
Q 022902 213 AIAVEAYKKY 222 (290)
Q Consensus 213 ~i~veAyKK~ 222 (290)
...+-+.-||
T Consensus 177 ~L~l~~~~~~ 186 (429)
T PF10037_consen 177 ALALYSCYKY 186 (429)
T ss_pred HHHHHHHHHh
Confidence 4444445555
No 117
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=62.81 E-value=9.9 Score=26.20 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=38.9
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccc
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE 169 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~ 169 (290)
.++...++..++.++.+ +|.. ..+...+.++++..+.++.|..++++-+..
T Consensus 4 ~~~~~~A~~~~~~~l~~-~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR-NPDN---PEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHH-TTTS---HHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35555688889998876 4433 456678999999999999999999987644
No 118
>PLN02789 farnesyltranstransferase
Probab=62.70 E-value=42 Score=31.71 Aligned_cols=33 Identities=9% Similarity=0.090 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 177 FLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 177 l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
..-.+|.|.++-.+++|++|++++..+|. -|.+
T Consensus 142 y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 142 YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 44567788999999999999999999997 4553
No 119
>PLN03218 maturation of RBCL 1; Provisional
Probab=62.48 E-value=2.5e+02 Score=31.13 Aligned_cols=111 Identities=12% Similarity=0.026 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhccccccc-ccCCchhHHHH
Q 022902 101 FINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIY-EINLPRDFFLY 179 (290)
Q Consensus 101 ~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~-~i~~~~~~l~Y 179 (290)
|..+++.+.+ .+....+...+.....+ +..+. ...-+.++..|.+.+.++.|..+++.-.- .+. + |...|
T Consensus 582 ynaLI~ay~k----~G~ldeA~elf~~M~e~-gi~p~--~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~-P-D~~Ty 652 (1060)
T PLN03218 582 VGALMKACAN----AGQVDRAKEVYQMIHEY-NIKGT--PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK-P-DEVFF 652 (1060)
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHHc-CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHH
Confidence 4444444433 35555566666665543 22222 23446788888899999999988876432 111 1 22222
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhhc---cCccchhHHHHHHHHH
Q 022902 180 CYYGGMIFIGQKRFRKALELLHNVVT---APMSSINAIAVEAYKK 221 (290)
Q Consensus 180 ~yygG~i~~~~k~~~~A~~~l~~ais---~P~~~~s~i~veAyKK 221 (290)
.- -.-.|+..+++++|.+.|+.... .|...+-..++.+|-|
T Consensus 653 ns-LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 653 SA-LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HH-HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 21 22346778899999999999885 3444444455555543
No 120
>PRK11906 transcriptional regulator; Provisional
Probab=62.16 E-value=42 Score=33.46 Aligned_cols=82 Identities=11% Similarity=0.113 Sum_probs=59.0
Q ss_pred cHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHH
Q 022902 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELL 200 (290)
Q Consensus 121 ~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l 200 (290)
|++..+.|+. +|+.. --.|..+-..-...+.++.|...+++... + .-+...=+||+|.+..-.++.++|.+++
T Consensus 323 a~~~A~rAve-ld~~D---a~a~~~~g~~~~~~~~~~~a~~~f~rA~~-L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 323 ALELLDYVSD-ITTVD---GKILAIMGLITGLSGQAKVSHILFEQAKI-H--STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHh-cCCCC---HHHHHHHHHHHHhhcchhhHHHHHHHHhh-c--CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4555555554 46654 22344444444555669999999999763 2 2245677899999999999999999999
Q ss_pred HHhhc-cCcc
Q 022902 201 HNVVT-APMS 209 (290)
Q Consensus 201 ~~ais-~P~~ 209 (290)
+.|++ .|-.
T Consensus 396 ~~alrLsP~~ 405 (458)
T PRK11906 396 DKSLQLEPRR 405 (458)
T ss_pred HHHhccCchh
Confidence 99998 7874
No 121
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=60.94 E-value=14 Score=32.17 Aligned_cols=63 Identities=13% Similarity=0.056 Sum_probs=46.7
Q ss_pred HHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 147 LQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 147 l~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
...++..|.|+.|...+++-+-..|.+...-.=.+..|..+-..++|++|...|+.-+. .|.+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 35678899999999999987766665333333346778899999999999999999997 8985
No 122
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=59.67 E-value=12 Score=21.38 Aligned_cols=23 Identities=17% Similarity=-0.008 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHH
Q 022902 179 YCYYGGMIFIGQKRFRKALELLH 201 (290)
Q Consensus 179 Y~yygG~i~~~~k~~~~A~~~l~ 201 (290)
..+.-|.++..++++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 35677899999999999998876
No 123
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.03 E-value=53 Score=29.20 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=68.1
Q ss_pred ccccccHHHHHHHHHhhCCCCCCchhhH-HHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHH
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLH-PEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR 194 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LTs~H-~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~ 194 (290)
+.--.++.-|+.++- .+..+.|.++- .-|.|+-+..|.++.|+..||.+.- ....-++.-..|-|+++.++=+
T Consensus 103 ~~~d~A~aqL~~~l~--~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~----~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 103 NNLDKAEAQLKQALA--QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE----ESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred ccHHHHHHHHHHHHc--cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc----ccHHHHHHHHhhhHHHHcCchH
Confidence 333445666666653 34456677654 4577888999999999999998763 3456788889999999999999
Q ss_pred HHHHHHHHhhcc-Cccchh
Q 022902 195 KALELLHNVVTA-PMSSIN 212 (290)
Q Consensus 195 ~A~~~l~~ais~-P~~~~s 212 (290)
+|+..|+.++-. |+...+
T Consensus 177 ~Ar~ay~kAl~~~~s~~~~ 195 (207)
T COG2976 177 EARAAYEKALESDASPAAR 195 (207)
T ss_pred HHHHHHHHHHHccCChHHH
Confidence 999999999975 443333
No 124
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=58.80 E-value=44 Score=35.85 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=51.4
Q ss_pred HHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 143 HPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 143 H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
-.++.++....+.|+.|+++++.-+-. +..+ .--++|--|.+|..++.|++|.++|+.|+- .|.+
T Consensus 417 ~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~-~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~ 482 (895)
T KOG2076|consen 417 YLDLADALTNIGKYKEALRLLSPITNR-EGYQ-NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDN 482 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhcC-cccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 345667888899999999998764432 2122 256788899999999999999999999995 9985
No 125
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=58.63 E-value=54 Score=32.06 Aligned_cols=64 Identities=16% Similarity=0.249 Sum_probs=47.8
Q ss_pred HHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 143 HPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 143 H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
...+++.++..+....|..++.+.+.+-+...+ =.-.-+-.++..++|+.|+...+.++. +|..
T Consensus 203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~---LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~ 267 (395)
T PF09295_consen 203 AVLLARVYLLMNEEVEAIRLLNEALKENPQDSE---LLNLQAEFLLSKKKYELALEIAKKAVELSPSE 267 (395)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 356788888888888888888887754433322 222567778899999999999999997 8884
No 126
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=55.14 E-value=29 Score=35.82 Aligned_cols=76 Identities=21% Similarity=0.289 Sum_probs=45.3
Q ss_pred HHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc-chhHHHHHHHHH
Q 022902 144 PEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS-SINAIAVEAYKK 221 (290)
Q Consensus 144 ~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~-~~s~i~veAyKK 221 (290)
+.+-+..-+.|..+.|+.++++.+. ++ +++.+. -|+.|.|+.++.+|++|+.-||..-- +|.. .+-+.+...||+
T Consensus 527 ~~~g~~~~~~k~~d~AL~~~~~A~~-ld-~kn~l~-~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~ 603 (638)
T KOG1126|consen 527 CHIGRIQHQLKRKDKALQLYEKAIH-LD-PKNPLC-KYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKR 603 (638)
T ss_pred hhhhHHHHHhhhhhHHHHHHHHHHh-cC-CCCchh-HHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 4444555566777777777777663 33 333332 24567777777777777777776654 6764 455555555554
Q ss_pred H
Q 022902 222 Y 222 (290)
Q Consensus 222 ~ 222 (290)
+
T Consensus 604 ~ 604 (638)
T KOG1126|consen 604 L 604 (638)
T ss_pred H
Confidence 3
No 127
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=52.44 E-value=1.4e+02 Score=26.80 Aligned_cols=107 Identities=9% Similarity=0.049 Sum_probs=71.2
Q ss_pred ccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHh----
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK---- 191 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k---- 191 (290)
++-..++..+...+.++. .+.......-.+....++.+.|+.|....++=|-..|.....=.=+|-.|+++..+.
T Consensus 46 g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~ 124 (243)
T PRK10866 46 GNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSAL 124 (243)
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhh
Confidence 344457777887777654 444445556788899999999999999999877666654333333566677753332
Q ss_pred -----------cH---HHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHH
Q 022902 192 -----------RF---RKALELLHNVVT-APMSSINAIAVEAYKKYILVS 226 (290)
Q Consensus 192 -----------~~---~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~ 226 (290)
|- .+|++.|+..|. .|.+ .-.-||-++...+.
T Consensus 125 ~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S---~ya~~A~~rl~~l~ 171 (243)
T PRK10866 125 QGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS---QYTTDATKRLVFLK 171 (243)
T ss_pred hhccCCCccccCHHHHHHHHHHHHHHHHHCcCC---hhHHHHHHHHHHHH
Confidence 22 468899999997 8974 33445555555554
No 128
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=49.67 E-value=15 Score=25.59 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=22.2
Q ss_pred HHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 184 GMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 184 G~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
.-||+..++|++|.++++.++. .|.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~ 27 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD 27 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc
Confidence 3588999999999999999998 577
No 129
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=48.20 E-value=3.2e+02 Score=27.97 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=97.4
Q ss_pred hcCcchhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHHhcCChhhhhhhhHhHHHHHHHHHHhHhhhccccccHHHHHH
Q 022902 48 QLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLT 127 (290)
Q Consensus 48 ~ldp~~~sl~~L~vL~a~~~~~~~~~~~~~l~~~v~~fl~~f~~~Qlr~a~~~~~~l~~~~~~~~~~~~~p~~~i~~L~~ 127 (290)
.+.|+.....++=+-..++.-+.+-..+++.+++...-+++.+-.-+++.-+..- .+...+ .+|..+...++.
T Consensus 52 ~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll------~~i~~~-~~~~~a~~~l~~ 124 (608)
T PF10345_consen 52 KLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLL------ARIYFK-TNPKAALKNLDK 124 (608)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH------HHHHHh-cCHHHHHHHHHH
Confidence 4678888888887777777555544466667777666665533333444333311 222233 334448899999
Q ss_pred HHHhhCCCCCCchhhHHHHHHH--HHHccCchhhhhcccccccccC---CchhHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 022902 128 AIRKIQSSTEHLTTLHPEFLQL--CLLAKCYKAGLSVLEDDIYEIN---LPRDFFLYCYYGGMIFIGQKRFRKALELLHN 202 (290)
Q Consensus 128 Ai~r~~~~~~~LTs~H~~ll~l--cL~ak~y~~Al~vl~~~i~~i~---~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ 202 (290)
+|...+..+..--..|-.|++. ++..+.+..|+..+..-+-.-. .+.-++...++-|++....+..+++.+-+..
T Consensus 125 ~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~ 204 (608)
T PF10345_consen 125 AIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQR 204 (608)
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 9998876554444455555544 4445789999998877443221 2455677888889999888888889888888
Q ss_pred hhc
Q 022902 203 VVT 205 (290)
Q Consensus 203 ais 205 (290)
|+.
T Consensus 205 ~~~ 207 (608)
T PF10345_consen 205 AIA 207 (608)
T ss_pred HHH
Confidence 854
No 130
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=48.08 E-value=1.4e+02 Score=27.67 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=49.6
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
.++++-.+-.-+++ ..++++ .+++|-+=...+.+..-...|..|.-+.+. +.+-. +..... ..-.+.+.+.+++|
T Consensus 143 ~~~R~dlA~k~l~~-~~~~~e-D~~l~qLa~awv~l~~g~e~~~~A~y~f~E-l~~~~-~~t~~~-lng~A~~~l~~~~~ 217 (290)
T PF04733_consen 143 KMNRPDLAEKELKN-MQQIDE-DSILTQLAEAWVNLATGGEKYQDAFYIFEE-LSDKF-GSTPKL-LNGLAVCHLQLGHY 217 (290)
T ss_dssp HTT-HHHHHHHHHH-HHCCSC-CHHHHHHHHHHHHHHHTTTCCCHHHHHHHH-HHCCS---SHHH-HHHHHHHHHHCT-H
T ss_pred HcCCHHHHHHHHHH-HHhcCC-cHHHHHHHHHHHHHHhCchhHHHHHHHHHH-HHhcc-CCCHHH-HHHHHHHHHHhCCH
Confidence 34444444444444 234443 345555555555555555567777666655 21111 111221 34567889999999
Q ss_pred HHHHHHHHHhhc-cCc
Q 022902 194 RKALELLHNVVT-APM 208 (290)
Q Consensus 194 ~~A~~~l~~ais-~P~ 208 (290)
++|.+.++.++. -|.
T Consensus 218 ~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 218 EEAEELLEEALEKDPN 233 (290)
T ss_dssp HHHHHHHHHHCCC-CC
T ss_pred HHHHHHHHHHHHhccC
Confidence 999999999986 454
No 131
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=47.71 E-value=71 Score=31.22 Aligned_cols=84 Identities=10% Similarity=-0.081 Sum_probs=65.4
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..+.|..-+..+...+.++..++ -++..|=++|++.|.|..|...++..+-.=++ ..=+-+.|-.+..+++-
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p----~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s----~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDP----LLLSTLGRLALKNKLWGKASEALEAALKLRPS----ASDYAELADALDQLGEP 377 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC----hhhHHHHHHHHHHcCCh
Confidence 34555556777777887776655 67788999999999999999999987753332 23344678999999999
Q ss_pred HHHHHHHHHhhc
Q 022902 194 RKALELLHNVVT 205 (290)
Q Consensus 194 ~~A~~~l~~ais 205 (290)
++|.++++-++.
T Consensus 378 ~~A~~~r~e~L~ 389 (400)
T COG3071 378 EEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHH
Confidence 999999998885
No 132
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.23 E-value=91 Score=32.73 Aligned_cols=51 Identities=16% Similarity=0.337 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCccch--------------hHHHHHHHHHHHHH
Q 022902 175 DFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSI--------------NAIAVEAYKKYILV 225 (290)
Q Consensus 175 ~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~~~--------------s~i~veAyKK~iLv 225 (290)
.|+.=||-.|-+|-.++.|++|..+|+.|+. -|..++ -...|+.||+-+=+
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~ 315 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL 315 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc
Confidence 5777888999999999999999999999998 676432 46889999998543
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=46.51 E-value=93 Score=31.24 Aligned_cols=86 Identities=10% Similarity=-0.035 Sum_probs=59.2
Q ss_pred HHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHH
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIF 187 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~ 187 (290)
.++.....+++..+++.++.|+.. +|....+. -.+-+..++.+.++.|.+.|++-....+. .-..++|-+..|
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l-~P~~~~l~---~~~a~all~~g~~~eai~~L~~~~~~~p~---dp~~w~~LAqay 418 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALAL-DPNSPLLQ---LNLAQALLKGGKPQEAIRILNRYLFNDPE---DPNGWDLLAQAY 418 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhc-CCCccHHH---HHHHHHHHhcCChHHHHHHHHHHhhcCCC---CchHHHHHHHHH
Confidence 345566778888899999999875 55554444 77888999999999999999987766542 233444555555
Q ss_pred HHHhcHHHHHHHH
Q 022902 188 IGQKRFRKALELL 200 (290)
Q Consensus 188 ~~~k~~~~A~~~l 200 (290)
..+++-.+|....
T Consensus 419 ~~~g~~~~a~~A~ 431 (484)
T COG4783 419 AELGNRAEALLAR 431 (484)
T ss_pred HHhCchHHHHHHH
Confidence 5555555554443
No 134
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=46.39 E-value=60 Score=26.03 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=38.8
Q ss_pred hhHhHHHHHHHHHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccc
Q 022902 97 VPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLED 165 (290)
Q Consensus 97 a~~~~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~ 165 (290)
.-..+...+..........+.+..++..++.++. .+|.. -.+|..+++.+...+.+..|+.+.++
T Consensus 57 l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~-~dP~~---E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 57 LRELYLDALERLAEALLEAGDYEEALRLLQRALA-LDPYD---EEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-HSTT----HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh-cCCCC---HHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3344555555566655566666666777766665 35544 45677777777777777777655443
No 135
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=46.16 E-value=50 Score=20.80 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHH
Q 022902 177 FLYCYYGGMIFIGQKRFRKALELLH 201 (290)
Q Consensus 177 l~Y~yygG~i~~~~k~~~~A~~~l~ 201 (290)
++|.|--|..+-.+|+|++|.++|+
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3577888999999999999999955
No 136
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=45.92 E-value=1.4e+02 Score=27.43 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc----chhHHHHHHHHHHHHHHH
Q 022902 174 RDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS----SINAIAVEAYKKYILVSL 227 (290)
Q Consensus 174 ~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~----~~s~i~veAyKK~iLv~L 227 (290)
.....+-+..|.-|...|.|-.|..-++.++- .|.+ -.-.++.|||.+|=|-.+
T Consensus 164 d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~ 222 (254)
T COG4105 164 DALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDE 222 (254)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHH
Confidence 35567889999999999999999999999995 5554 345899999999865544
No 137
>PRK15331 chaperone protein SicA; Provisional
Probab=44.60 E-value=2e+02 Score=24.66 Aligned_cols=54 Identities=17% Similarity=0.026 Sum_probs=36.8
Q ss_pred HHHHHccCchhhhhccccc-ccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 148 QLCLLAKCYKAGLSVLEDD-IYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 148 ~lcL~ak~y~~Al~vl~~~-i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais 205 (290)
...+..+.|+.|..+..-= +. +. ..-+|++=-|.++=.+|+|++|.++|..|..
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~--d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIY--DF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFT 99 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--Cc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666665544331 11 11 1256888889999999999999999999875
No 138
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=44.14 E-value=51 Score=32.86 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 174 RDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 174 ~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
-+....++.-|.+|..+++|++|..+|+.++. -|..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ 108 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP 108 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Confidence 35678888889999999999999999999998 6774
No 139
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=44.11 E-value=27 Score=29.29 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=31.5
Q ss_pred chhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcc-Cc
Q 022902 173 PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA-PM 208 (290)
Q Consensus 173 ~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~-P~ 208 (290)
+..--+|.||-+.-+..+|+|++|+.+...++.+ |.
T Consensus 67 ~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 67 PERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 4456789999999999999999999999999974 55
No 140
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.03 E-value=32 Score=35.07 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=30.8
Q ss_pred HHHHHHHHhcHHHHHHHHHHhhc-cCccc--------------hhHHHHHHHHHH
Q 022902 183 GGMIFIGQKRFRKALELLHNVVT-APMSS--------------INAIAVEAYKKY 222 (290)
Q Consensus 183 gG~i~~~~k~~~~A~~~l~~ais-~P~~~--------------~s~i~veAyKK~ 222 (290)
.|.+|--.++|+||.+||+.|++ =|... -|.=+|+||.+-
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 47788888999999999999998 67642 256677777765
No 141
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=42.54 E-value=52 Score=28.16 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 179 YCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 179 Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
-..+-|++++..++|.+|...|+.+.. .|.+
T Consensus 46 ~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~ 77 (160)
T PF09613_consen 46 LDLFDGWLHIVRGDWDDALRLLRELEERAPGF 77 (160)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 345679999999999999999999886 5543
No 142
>PRK13916 plasmid segregation protein ParR; Provisional
Probab=40.61 E-value=68 Score=24.52 Aligned_cols=49 Identities=24% Similarity=0.444 Sum_probs=37.8
Q ss_pred HHHHHHhcHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 022902 185 MIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYT 241 (290)
Q Consensus 185 ~i~~~~k~~~~A~~~l~~ais~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~ 241 (290)
..|+..++|.+-++|++.+ |-.+..++..|+..|||=-. |.-| ++|.-.
T Consensus 9 ~L~i~r~~~~~iF~FL~~~---P~GT~~~~iR~~L~rYI~~~----G~~~-PiP~~~ 57 (97)
T PRK13916 9 LLKIKKEDYPQIFDFLENV---PRGTKTAHIREALRRYIEEI----GENP-PIPSKE 57 (97)
T ss_pred HHHhcccccHHHHHHHHHC---CCCCccHHHHHHHHHHHHhc----CCCC-CCCccc
Confidence 4678889999888888764 77677789999999996443 7777 888643
No 143
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=40.23 E-value=57 Score=28.59 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=27.8
Q ss_pred hcHHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHH
Q 022902 191 KRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSL 227 (290)
Q Consensus 191 k~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~L 227 (290)
.-|++|.++|+.|+- =|.+.+-...+|-.+|---+..
T Consensus 94 ~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~ 131 (186)
T PF06552_consen 94 EYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHM 131 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHH
Confidence 348999999999998 7998888888888877654443
No 144
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=40.23 E-value=43 Score=33.34 Aligned_cols=80 Identities=10% Similarity=0.019 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCC-chhHHHHHHHHHHHHHHHhcHHHHHHHH
Q 022902 122 VGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-PRDFFLYCYYGGMIFIGQKRFRKALELL 200 (290)
Q Consensus 122 i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~-~~~~l~Y~yygG~i~~~~k~~~~A~~~l 200 (290)
-..|.....||+. +.-+ .-.--|.+...++.+.|+..+++.+..-++ .+-....+|--|.+++.+.+|++|.++|
T Consensus 253 ~~lL~~~~~~yP~-s~lf---l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 253 EELLEEMLKRYPN-SALF---LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHhCCC-cHHH---HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 3445555555553 3211 233348888999999999999987631122 2223455788999999999999999999
Q ss_pred HHhhc
Q 022902 201 HNVVT 205 (290)
Q Consensus 201 ~~ais 205 (290)
...+.
T Consensus 329 ~~L~~ 333 (468)
T PF10300_consen 329 LRLLK 333 (468)
T ss_pred HHHHh
Confidence 99985
No 145
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.12 E-value=31 Score=31.84 Aligned_cols=105 Identities=15% Similarity=0.101 Sum_probs=63.7
Q ss_pred HHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc-chhHHHHHHHHHHHHHHH
Q 022902 150 CLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS-SINAIAVEAYKKYILVSL 227 (290)
Q Consensus 150 cL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~-~~s~i~veAyKK~iLv~L 227 (290)
.+++|.|+.|..-+..-|-.+|.+.---+=+|.-|-.+-++++|++|...|..++. .|.+ -.+.-| =|+-. ++
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal----lKlg~-~~ 225 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL----LKLGV-SL 225 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH----HHHHH-HH
Confidence 34566677777766666666665333344456678888999999999999999997 7874 222222 22222 22
Q ss_pred HhcCCCCCCCCCCCCHHHHHhhhhcchhHHHHHHHhcCCChHHHHHHH
Q 022902 228 IHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYV 275 (290)
Q Consensus 228 l~~G~~~~~lPk~~s~~~~r~~k~~~~pY~~la~af~~~~~~~l~~~~ 275 (290)
-..|+.- ..|.-|.++.+-|...+.....++.
T Consensus 226 ~~l~~~d----------------~A~atl~qv~k~YP~t~aA~~Ak~~ 257 (262)
T COG1729 226 GRLGNTD----------------EACATLQQVIKRYPGTDAAKLAKVA 257 (262)
T ss_pred HHhcCHH----------------HHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 2223321 2456677777778776655554443
No 146
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=39.04 E-value=71 Score=31.79 Aligned_cols=31 Identities=13% Similarity=0.301 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 175 DFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 175 ~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais 205 (290)
+-..|.++.|.++...++-++|.++|+.|+.
T Consensus 265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~ 295 (468)
T PF10300_consen 265 NSALFLFFEGRLERLKGNLEEAIESFERAIE 295 (468)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHhcc
Confidence 5688999999999999999999999999985
No 147
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=38.89 E-value=1.6e+02 Score=27.02 Aligned_cols=112 Identities=13% Similarity=0.064 Sum_probs=59.2
Q ss_pred HHHHHHHHHhHHHHHhhhhhhhhhhhhcCcchhHHHHHHHHHHhhhcccchhhhhhHH---HHHHHHHhcCC--hhhhhh
Q 022902 22 TALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLV---PIIARFITSCS--AEQIRY 96 (290)
Q Consensus 22 ~~L~~~l~~~~~~l~~~~~~~~~~L~~ldp~~~sl~~L~vL~a~~~~~~~~~~~~~l~---~~v~~fl~~f~--~~Qlr~ 96 (290)
.++.+.|+-+.+.+......+..++..++|....+.-..--.+.+..... ....+++ +.+..-..... +.|++-
T Consensus 20 ~ala~Al~GrG~~lg~~l~~l~~~l~~ln~~~~~l~~~l~~l~~v~~~~a-~aapdL~~~l~~~~~~s~tL~~~~~~L~~ 98 (267)
T PF11887_consen 20 SALATALDGRGEQLGETLDDLNTLLATLNPRLPQLREDLRNLADVADTYA-DAAPDLLDALDNLTTTSRTLVDQRQQLDA 98 (267)
T ss_pred HHHHHHHcCcchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444444455777777778888888888888777655433333322211 1222232 33333333322 455555
Q ss_pred hhHhHHHHHHHHHHhHhhhccc----cccHHHHHHHHHhhCC
Q 022902 97 VPEKFINVCKRYKDQVLLLEAP----IRGVGPMLTAIRKIQS 134 (290)
Q Consensus 97 a~~~~~~l~~~~~~~~~~~~~p----~~~i~~L~~Ai~r~~~ 134 (290)
.-.....+.....+.+...+.. ...+.|....+.++.|
T Consensus 99 lL~~~~~~a~~~~~~l~~n~~~L~~~~~~L~p~~~lL~~~~p 140 (267)
T PF11887_consen 99 LLLSATGLADTGTDFLADNRDNLIRALDDLRPTTDLLAKYSP 140 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCc
Confidence 5555556666555555544433 2345556666666555
No 148
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=38.49 E-value=57 Score=27.70 Aligned_cols=28 Identities=18% Similarity=0.497 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 181 YYGGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 181 yygG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
.+-|++++..++|.+|...|..+.. .|.
T Consensus 48 ~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 48 MFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred hhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 4679999999999999999999997 444
No 149
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=38.03 E-value=62 Score=27.11 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=43.2
Q ss_pred HHHHHHccCchhhhhcccccccccCC--chhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 147 LQLCLLAKCYKAGLSVLEDDIYEINL--PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 147 l~lcL~ak~y~~Al~vl~~~i~~i~~--~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.+..+..++|+.|.+.++.=...+|. ...- =-+-.|-.|-..++|++|...+++=|. .|.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~q--AqL~l~yayy~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQ--AQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHH--HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 35678999999999888875444443 2111 112234455678999999999999998 8885
No 150
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.69 E-value=71 Score=24.11 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=42.4
Q ss_pred HHHHHHccCchhhhhcccccc--cccCC-ch--hHHHH-HHHHHHHHHHHhcHHHHHHHHHHhhcc
Q 022902 147 LQLCLLAKCYKAGLSVLEDDI--YEINL-PR--DFFLY-CYYGGMIFIGQKRFRKALELLHNVVTA 206 (290)
Q Consensus 147 l~lcL~ak~y~~Al~vl~~~i--~~i~~-~~--~~l~Y-~yygG~i~~~~k~~~~A~~~l~~ais~ 206 (290)
.-.+++.+.|..|++-+.+-. ..... .. ..+.| ....|.+....+++++|...++.+|..
T Consensus 5 ~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 5 YLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 347889999999988877632 11111 11 23333 345788999999999999999999983
No 151
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=37.16 E-value=4.6e+02 Score=26.61 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=77.4
Q ss_pred ccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCC----------------chhH-HHHH
Q 022902 118 PIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL----------------PRDF-FLYC 180 (290)
Q Consensus 118 p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~----------------~~~~-l~Y~ 180 (290)
...+|...+.|+ +++|.. ++.|++.=..++.-|+-..|..--.+.| +|++ .-.+ ..||
T Consensus 346 HEKAv~YFkRAL-kLNp~~---~~aWTLmGHEyvEmKNt~AAi~sYRrAv-di~p~DyRAWYGLGQaYeim~Mh~YaLyY 420 (559)
T KOG1155|consen 346 HEKAVMYFKRAL-KLNPKY---LSAWTLMGHEYVEMKNTHAAIESYRRAV-DINPRDYRAWYGLGQAYEIMKMHFYALYY 420 (559)
T ss_pred HHHHHHHHHHHH-hcCcch---hHHHHHhhHHHHHhcccHHHHHHHHHHH-hcCchhHHHHhhhhHHHHHhcchHHHHHH
Confidence 345788888886 477754 8899999999999998777776655543 3432 1112 2333
Q ss_pred H---------------HHHHHHHHHhcHHHHHHHHHHhhccCcc---ch------------hHHHHHHHHHHHHHHHHhc
Q 022902 181 Y---------------YGGMIFIGQKRFRKALELLHNVVTAPMS---SI------------NAIAVEAYKKYILVSLIHH 230 (290)
Q Consensus 181 y---------------ygG~i~~~~k~~~~A~~~l~~ais~P~~---~~------------s~i~veAyKK~iLv~Ll~~ 230 (290)
| --|-+|..+.+-++|.-||.+|+-.-.+ +. ..-....|+|+|=|+ .+.
T Consensus 421 fqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~e 499 (559)
T KOG1155|consen 421 FQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELE 499 (559)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-Hhh
Confidence 3 2588999999999999999999975432 11 334567899999999 455
Q ss_pred CCCC
Q 022902 231 GQFS 234 (290)
Q Consensus 231 G~~~ 234 (290)
|.+.
T Consensus 500 g~~~ 503 (559)
T KOG1155|consen 500 GEID 503 (559)
T ss_pred cccc
Confidence 7776
No 152
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=36.97 E-value=2.9e+02 Score=26.77 Aligned_cols=50 Identities=8% Similarity=-0.031 Sum_probs=33.1
Q ss_pred ccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccc
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLED 165 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~ 165 (290)
+.--|+|+..++.+.+-|-+.++=--.--.|-|.++.++.|+-|..++..
T Consensus 83 GEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~ 132 (389)
T COG2956 83 GEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQ 132 (389)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 34456888888888764433322222224567889999999999887654
No 153
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.85 E-value=53 Score=33.25 Aligned_cols=37 Identities=14% Similarity=0.301 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhhc-cCccchhHHHH
Q 022902 180 CYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAV 216 (290)
Q Consensus 180 ~yygG~i~~~~k~~~~A~~~l~~ais-~P~~~~s~i~v 216 (290)
||..|-++..+.+|++|..=|+.||+ .|.++.+.|+.
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl 434 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL 434 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence 78899999999999999999999999 89988887775
No 154
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=36.84 E-value=3.8e+02 Score=27.64 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=26.1
Q ss_pred CcchhHHHHHH---HHHHhhhcccchhhhhhHH-HHHHHHHhcCChhhhhhhhHh
Q 022902 50 DPSKHSLGYLY---FLEPCMYCSITKERANTLV-PIIARFITSCSAEQIRYVPEK 100 (290)
Q Consensus 50 dp~~~sl~~L~---vL~a~~~~~~~~~~~~~l~-~~v~~fl~~f~~~Qlr~a~~~ 100 (290)
+....|.|+.- .|.|.+++.- ++-++.++ ..++.|-.+|.+.---.+...
T Consensus 205 ~aq~asp~ft~vyaALvAviNskf-P~IgElLlkrLilqf~r~f~RnDk~~c~~~ 258 (739)
T KOG2140|consen 205 QAQAASPGFTPVYAALVAVINSKF-PQIGELLLKRLILQFKRSFRRNDKVSCLNA 258 (739)
T ss_pred HHHhcCCCCcHHHHHHHHHHccCC-chHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 34444444443 4445555443 33344443 677789998887444334433
No 155
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.06 E-value=3.8e+02 Score=25.02 Aligned_cols=96 Identities=21% Similarity=0.358 Sum_probs=54.7
Q ss_pred chhHHHHHHHH--HHHHHHHhcHHHHHHHHHHhhc-------cCcc---chhHHHHHHH-HHHHHHHHHhcCCCCCCCCC
Q 022902 173 PRDFFLYCYYG--GMIFIGQKRFRKALELLHNVVT-------APMS---SINAIAVEAY-KKYILVSLIHHGQFSSTLPK 239 (290)
Q Consensus 173 ~~~~l~Y~yyg--G~i~~~~k~~~~A~~~l~~ais-------~P~~---~~s~i~veAy-KK~iLv~Ll~~G~~~~~lPk 239 (290)
.++...|-.|| |.++..+++|++|--+|..-.. .|+. .+++|.|--| .-|+.---+.+ +-. ..|-
T Consensus 144 dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r-~~~-qip~ 221 (308)
T KOG1585|consen 144 DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR-DCS-QIPA 221 (308)
T ss_pred chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc-chh-cCcc
Confidence 45566666665 7899999999999877765433 3331 3333333222 11222221221 111 2344
Q ss_pred CCCHHHHHhhhhcchhHHHHHHHhcCCChHHHHHHHHH
Q 022902 240 YTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQT 277 (290)
Q Consensus 240 ~~s~~~~r~~k~~~~pY~~la~af~~~~~~~l~~~~~~ 277 (290)
+-.+- .+..-.+|..+|..||.+++..+...
T Consensus 222 f~~se-------d~r~lenLL~ayd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 222 FLKSE-------DSRSLENLLTAYDEGDIEEIKKVLSS 252 (308)
T ss_pred ccChH-------HHHHHHHHHHHhccCCHHHHHHHHcC
Confidence 33332 23445678899999999999888763
No 156
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=34.43 E-value=29 Score=21.25 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhcHHHHH
Q 022902 177 FLYCYYGGMIFIGQKRFRKAL 197 (290)
Q Consensus 177 l~Y~yygG~i~~~~k~~~~A~ 197 (290)
...++.-|.+|...++|++|.
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 445666677999999999986
No 157
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=33.84 E-value=1.1e+02 Score=30.63 Aligned_cols=67 Identities=21% Similarity=0.174 Sum_probs=54.6
Q ss_pred chhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 139 LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 139 LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
-|+.-..+..+|+.-+-|+-+..+|++....++ . ..-+--.|-|+.+...+++|.+.|..|++ -|.+
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--D--~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--D--VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--c--cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 356668889999999999999999999764332 2 23345678999999999999999999999 6875
No 158
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.75 E-value=1.1e+02 Score=31.68 Aligned_cols=64 Identities=20% Similarity=0.329 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHccCchhhhhcccc----cccccCC------------------------chhHHHHHHHHHHHHHHHhcH
Q 022902 142 LHPEFLQLCLLAKCYKAGLSVLED----DIYEINL------------------------PRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 142 ~H~~ll~lcL~ak~y~~Al~vl~~----~i~~i~~------------------------~~~~l~Y~yygG~i~~~~k~~ 193 (290)
+-.+-.|.|++-+.|+.|+.+-.+ .+-+.+. +.|-.+-+|-.++|++..++|
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 334557889999999999877432 2322221 556788899999999999999
Q ss_pred HHHHHHHHHhhc
Q 022902 194 RKALELLHNVVT 205 (290)
Q Consensus 194 ~~A~~~l~~ais 205 (290)
.+|.+.|+.+..
T Consensus 192 ~qA~elL~kA~~ 203 (652)
T KOG2376|consen 192 NQAIELLEKALR 203 (652)
T ss_pred HHHHHHHHHHHH
Confidence 999999999954
No 159
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=33.28 E-value=1.1e+02 Score=32.04 Aligned_cols=124 Identities=12% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHccCchhhhhcccccccccCC--------------------------------chhHHHHHHHHHHHHHHHhcHHHHH
Q 022902 150 CLLAKCYKAGLSVLEDDIYEINL--------------------------------PRDFFLYCYYGGMIFIGQKRFRKAL 197 (290)
Q Consensus 150 cL~ak~y~~Al~vl~~~i~~i~~--------------------------------~~~~l~Y~yygG~i~~~~k~~~~A~ 197 (290)
|+..|+|+.+|++++.-....+. .+....+|-| |+++-.-|+|.+|.
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~-gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL-GLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH-HHHHhhhhhHHHHH
Q ss_pred HHHHHhhccCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhhhcchhHHHHHHHhcCCChHHHHHHHHH
Q 022902 198 ELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQT 277 (290)
Q Consensus 198 ~~l~~ais~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k~~~~pY~~la~af~~~~~~~l~~~~~~ 277 (290)
-||..|+..-.+-.+ -++-+.|++ +.+|+.- +.--......+-.-......----+.++..|+...-..+++.
T Consensus 96 Kcy~nAl~~~~dN~q-----ilrDlslLQ-~QmRd~~-~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 96 KCYRNALKIEKDNLQ-----ILRDLSLLQ-IQMRDYE-GYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred HHHHHHHhcCCCcHH-----HHHHHHHHH-HHHHhhh-hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHh
Q 022902 278 NREK 281 (290)
Q Consensus 278 ~~~~ 281 (290)
++++
T Consensus 169 f~~t 172 (700)
T KOG1156|consen 169 FEKT 172 (700)
T ss_pred HHHh
No 160
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.06 E-value=3e+02 Score=25.46 Aligned_cols=98 Identities=14% Similarity=0.008 Sum_probs=72.4
Q ss_pred cHHHHHHHHHhhCCCCCCch-hhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHH
Q 022902 121 GVGPMLTAIRKIQSSTEHLT-TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALEL 199 (290)
Q Consensus 121 ~i~~L~~Ai~r~~~~~~~LT-s~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~ 199 (290)
+....+.-|.+|+.++ .| -.|=-|-+..+.-+.|+-|..+..+-+-+.+++.--=.=.+=.|++...+++-++|...
T Consensus 160 A~~~F~~fi~~YP~s~--~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~at 237 (262)
T COG1729 160 AEQAFQAFIKKYPNST--YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACAT 237 (262)
T ss_pred HHHHHHHHHHcCCCCc--ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHH
Confidence 4556667777776533 45 45566777888889999999988887777775322223346689999999999999999
Q ss_pred HHHhhc-cCccchhHHHHHHHH
Q 022902 200 LHNVVT-APMSSINAIAVEAYK 220 (290)
Q Consensus 200 l~~ais-~P~~~~s~i~veAyK 220 (290)
|++++. .|.+......-++-|
T Consensus 238 l~qv~k~YP~t~aA~~Ak~~~~ 259 (262)
T COG1729 238 LQQVIKRYPGTDAAKLAKVALK 259 (262)
T ss_pred HHHHHHHCCCCHHHHHHHHHHh
Confidence 999997 999766655555543
No 161
>PF12070 DUF3550: Protein of unknown function (DUF3550/UPF0682); InterPro: IPR022709 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 249 to 606 amino acids in length.
Probab=31.91 E-value=3.5e+02 Score=27.51 Aligned_cols=99 Identities=17% Similarity=0.325 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHhcH-HHHHHHHHHhhcc----Ccc--chhHH-----HHHHHHHHHHHHHHhcCCCCCCCCCCCCH
Q 022902 176 FFLYCYYGGMIFIGQKRF-RKALELLHNVVTA----PMS--SINAI-----AVEAYKKYILVSLIHHGQFSSTLPKYTSS 243 (290)
Q Consensus 176 ~l~Y~yygG~i~~~~k~~-~~A~~~l~~ais~----P~~--~~s~i-----~veAyKK~iLv~Ll~~G~~~~~lPk~~s~ 243 (290)
-|=|+|| ..++--+| .+|..|++.+.+- +.. ..+.. ++.-|-++|+|+|+++ +.- . . .
T Consensus 70 QLYyhyY---LRTse~~yL~Ea~~FY~AI~~R~Yf~~~~~~~~~dl~~~~K~LR~~ARFivVcLlLn-r~~-~----V-~ 139 (513)
T PF12070_consen 70 QLYYHYY---LRTSETNYLNEAYIFYEAIRSRGYFKDASKEEKPDLMVPNKQLRYYARFIVVCLLLN-RME-M----V-K 139 (513)
T ss_pred HHHHHHH---HHhccccHHHHHHHHHHHHHhhhhccccccccccccchhHHHHHHHHHHHHHHHHhh-hHH-H----H-H
Confidence 3556666 44444443 5777777554431 211 11333 4467889999999996 221 1 1 1
Q ss_pred HHHHhhhhcchhHHHHHHHhcCCChHHHHHHHHHhHHhhhcccc
Q 022902 244 AAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESVSY 287 (290)
Q Consensus 244 ~~~r~~k~~~~pY~~la~af~~~~~~~l~~~~~~~~~~f~~D~N 287 (290)
...+-++.....| ...|...|..+++-+++.-..--+.|..
T Consensus 140 ~Lv~el~~~v~dy---~~~~~~~d~~EW~lVlqEI~~Fl~Ad~~ 180 (513)
T PF12070_consen 140 DLVRELSKLVDDY---TSTYQESDQKEWSLVLQEIKRFLKADSA 180 (513)
T ss_pred HHHHHHHHHHHHH---HhcCCCcCcccHHHHHHHHHHHHhCccc
Confidence 2223333333333 4567778888888777776666666654
No 162
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=31.90 E-value=2.4e+02 Score=21.78 Aligned_cols=69 Identities=12% Similarity=0.157 Sum_probs=44.1
Q ss_pred CccHHHHHHHHHhhcCChhcHHHHHHHHHHhHHHHHhhhhhhhhhhhhcCcchhHHHHHHHHHHhhhccc
Q 022902 1 MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSI 70 (290)
Q Consensus 1 ~~~l~~~~~~i~~~~~s~~~~~~L~~~l~~~~~~l~~~~~~~~~~L~~ldp~~~sl~~L~vL~a~~~~~~ 70 (290)
|..-++++...+++..|+.+...|......+...-..-.....+-+... |..+-|+.||++...+....
T Consensus 1 ~~~~~~~l~~L~~~~~S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~-~~~~KL~~LYL~dsIvkn~~ 69 (114)
T cd03562 1 VFDYNALLEKLTFNKNSQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKC-PPEQKLPLLYLLDSIVKNVG 69 (114)
T ss_pred CccHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcccchHHHHHHHHHHHHcc
Confidence 3456778888888877787888887766544322112122223333343 44889999999998886544
No 163
>PF13041 PPR_2: PPR repeat family
Probab=31.12 E-value=74 Score=20.65 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=20.4
Q ss_pred HHHHhcHHHHHHHHHHhhc---cCccchhHHHHHHH
Q 022902 187 FIGQKRFRKALELLHNVVT---APMSSINAIAVEAY 219 (290)
Q Consensus 187 ~~~~k~~~~A~~~l~~ais---~P~~~~s~i~veAy 219 (290)
|+..+++++|.+.|+.-.. .|....-.+++.++
T Consensus 13 ~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 13 YCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 5667788888888887775 34433344555443
No 164
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=30.35 E-value=72 Score=21.10 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcHHHHHHHHHHhhcc
Q 022902 182 YGGMIFIGQKRFRKALELLHNVVTA 206 (290)
Q Consensus 182 ygG~i~~~~k~~~~A~~~l~~ais~ 206 (290)
--+..|+.+++++.|.+.++.++.-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 3477899999999999999999963
No 165
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=30.26 E-value=4.2e+02 Score=24.07 Aligned_cols=87 Identities=13% Similarity=0.033 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCC-chhHHHHHHHHHHHHHHHhcHHHHHHHH
Q 022902 122 VGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-PRDFFLYCYYGGMIFIGQKRFRKALELL 200 (290)
Q Consensus 122 i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~-~~~~l~Y~yygG~i~~~~k~~~~A~~~l 200 (290)
|--+|..+.+.-..+..+......+.++|-++|+++.|...+.+---..+. ...-....+--+.+.-..++-.+|+..+
T Consensus 128 il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L 207 (352)
T PF02259_consen 128 ILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKL 207 (352)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHH
Confidence 344666666532334556788899999999999999999888774321111 1113455555667777778889999999
Q ss_pred HHhhc-cCc
Q 022902 201 HNVVT-APM 208 (290)
Q Consensus 201 ~~ais-~P~ 208 (290)
+..+. .+.
T Consensus 208 ~~~~~~~~~ 216 (352)
T PF02259_consen 208 RELLKCRLS 216 (352)
T ss_pred HHHHHHHhh
Confidence 88887 443
No 166
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.10 E-value=95 Score=29.05 Aligned_cols=78 Identities=21% Similarity=0.347 Sum_probs=47.4
Q ss_pred HHHHHHHhcHHHHHHHHHHhhc-cCcc--chhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhhh--cchhHHH
Q 022902 184 GMIFIGQKRFRKALELLHNVVT-APMS--SINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN--FSQPYME 258 (290)
Q Consensus 184 G~i~~~~k~~~~A~~~l~~ais-~P~~--~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k~--~~~pY~~ 258 (290)
+.+.+.++||++|...++.++. -|.. +++..+ |+-++.||-+ + +..|.+.. ...|=+.
T Consensus 214 Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli---------v~a~~~Gkd~-~-------~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 214 AVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI---------VLALHLGKDA-E-------VTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH---------HHHHHhCCCh-H-------HHHHHHHHHHhcCCcch
Confidence 5678899999999999999997 4442 333222 2335558865 3 23333332 2346666
Q ss_pred HHHHhcCCChHHHHHHHHHhH
Q 022902 259 LVNTYNTGKIVELETYVQTNR 279 (290)
Q Consensus 259 la~af~~~~~~~l~~~~~~~~ 279 (290)
|+.-+...+ .+|.+.+.++.
T Consensus 277 ~vk~~~eke-aeFDrl~~qy~ 296 (299)
T KOG3081|consen 277 FVKHLNEKE-AEFDRLVLQYD 296 (299)
T ss_pred HHHHHHHHH-HHHHHHHHHhc
Confidence 777765532 56777766543
No 167
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=28.47 E-value=1.3e+02 Score=31.25 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=69.2
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHH
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR 194 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~ 194 (290)
.++|-.++..|..|.+- .| .+...|+ ..|.++-++++...-|-.+|....- +.. .-=.+||--|..|.++++-+
T Consensus 620 ~gn~~~a~~cl~~a~~~-~p-~~~~v~~-v~la~~~~~~~~~~da~~~l~q~l~-~~~--sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNL-AP-LQQDVPL-VNLANLLIHYGLHLDATKLLLQALA-INS--SEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cCCcHHHHHHHHHHhcc-Ch-hhhcccH-HHHHHHHHHhhhhccHHHHHHHHHh-hcc--cCchHHHhcchhHHHHhhhH
Confidence 45666678888888753 23 2445555 6778888888888888777776531 111 11257889999999999999
Q ss_pred HHHHHHHHhhc-cCcc-----chhHHHHHHHHHH
Q 022902 195 KALELLHNVVT-APMS-----SINAIAVEAYKKY 222 (290)
Q Consensus 195 ~A~~~l~~ais-~P~~-----~~s~i~veAyKK~ 222 (290)
+|++.|.+|+- .|-. .+-.|..-.+|-+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c~~~~~~ 727 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRCMQFYPF 727 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHhhhhhH
Confidence 99999999996 4542 3445554444443
No 168
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=27.65 E-value=45 Score=19.33 Aligned_cols=23 Identities=22% Similarity=0.337 Sum_probs=15.3
Q ss_pred HHHHHHHHHHccCchhhhhcccc
Q 022902 143 HPEFLQLCLLAKCYKAGLSVLED 165 (290)
Q Consensus 143 H~~ll~lcL~ak~y~~Al~vl~~ 165 (290)
.+.+++.|.+++.++.|..+++.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~ 26 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDE 26 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 45667777777777777666654
No 169
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=26.90 E-value=92 Score=30.01 Aligned_cols=91 Identities=18% Similarity=0.255 Sum_probs=63.8
Q ss_pred HHhhCCCC--CCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-
Q 022902 129 IRKIQSST--EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT- 205 (290)
Q Consensus 129 i~r~~~~~--~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais- 205 (290)
+.++++.+ -.+.-.-+.|.+..+.++..+.|...+.+..-. + ..+.+=----|.|++..++|+.|.+.++.+..
T Consensus 167 L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa-~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ 243 (389)
T COG2956 167 LVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA-D--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ 243 (389)
T ss_pred HHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh-C--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh
Confidence 34555544 334455578888899999999999999887532 2 12233334569999999999999999999998
Q ss_pred cCc--cchhHHHHHHHHHH
Q 022902 206 APM--SSINAIAVEAYKKY 222 (290)
Q Consensus 206 ~P~--~~~s~i~veAyKK~ 222 (290)
-|. ..+-....+||...
T Consensus 244 n~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 244 NPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred ChHHHHHHHHHHHHHHHHh
Confidence 565 24555566777664
No 170
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=26.76 E-value=1.1e+02 Score=28.79 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcc---------------CccchhHH
Q 022902 150 CLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA---------------PMSSINAI 214 (290)
Q Consensus 150 cL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~---------------P~~~~s~i 214 (290)
..+.+.|..|+..-+..|--.|.. .-||--.+=+|+.++.|+.|.+-.+.||+. =+..--.-
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~n---AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTN---AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Q ss_pred HHHHHHHHHHH
Q 022902 215 AVEAYKKYILV 225 (290)
Q Consensus 215 ~veAyKK~iLv 225 (290)
++|+|||-+.+
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
No 171
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=26.17 E-value=2.2e+02 Score=30.12 Aligned_cols=96 Identities=16% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCC---------------
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL--------------- 172 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~--------------- 172 (290)
+++.=+..+++.++=..|..+-+| +|....|= ...+|.=+++++.++|...+.+..-+.|+
T Consensus 725 LakleEk~~~~~rAR~ildrarlk-NPk~~~lw---le~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLK-NPKNALLW---LESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP 800 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhc-CCCcchhH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc
Q ss_pred ------------chhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cC
Q 022902 173 ------------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-AP 207 (290)
Q Consensus 173 ------------~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P 207 (290)
-..--.-..-.|..+-..+++++|++||++++. -|
T Consensus 801 ~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 801 QRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred ccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
No 172
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=25.29 E-value=42 Score=33.74 Aligned_cols=90 Identities=19% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHhcHHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhhhcchhHHHHHHH
Q 022902 184 GMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNT 262 (290)
Q Consensus 184 G~i~~~~k~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k~~~~pY~~la~a 262 (290)
|-|+...++|.+|+.||.+++- .|+ +.+-|.=---.-|-|..|..|+..+.+..| -.....--+....|.-+.-+
T Consensus 244 gni~~kkr~fskaikfyrmaldqvps--ink~~rikil~nigvtfiq~gqy~dainsf--dh~m~~~pn~~a~~nl~i~~ 319 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPS--INKDMRIKILNNIGVTFIQAGQYDDAINSF--DHCMEEAPNFIAALNLIICA 319 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccc--cchhhHHHHHhhcCeeEEecccchhhHhhH--HHHHHhCccHHhhhhhhhhh
Q ss_pred hcCCChHHHHHHHHH
Q 022902 263 YNTGKIVELETYVQT 277 (290)
Q Consensus 263 f~~~~~~~l~~~~~~ 277 (290)
|..||.++.+..++|
T Consensus 320 f~i~d~ekmkeaf~k 334 (840)
T KOG2003|consen 320 FAIGDAEKMKEAFQK 334 (840)
T ss_pred eecCcHHHHHHHHHH
No 173
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=25.11 E-value=55 Score=32.48 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=37.5
Q ss_pred HHHHHHHccCchhhhhcccccccccCC--chhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcc
Q 022902 146 FLQLCLLAKCYKAGLSVLEDDIYEINL--PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA 206 (290)
Q Consensus 146 ll~lcL~ak~y~~Al~vl~~~i~~i~~--~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~ 206 (290)
|+|.=..-+.|...+..+|..=-++-. +.+-.. ||.|-.|..++||.+|.+.|..++..
T Consensus 241 LlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT--Y~VGFayLmmrryadai~~F~niLly 301 (525)
T KOG3677|consen 241 LLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT--YQVGFAYLMMRRYADAIRVFLNILLY 301 (525)
T ss_pred HHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe--eehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555543222211 222222 99999999999999999999888853
No 174
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=24.64 E-value=1.4e+02 Score=20.59 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=29.8
Q ss_pred HHhhhhcchhHHHHHHHhcCCChHHHHHHHHHhHHhhhcc
Q 022902 246 QRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESV 285 (290)
Q Consensus 246 ~r~~k~~~~pY~~la~af~~~~~~~l~~~~~~~~~~f~~D 285 (290)
...++........+...+.+.+..+++.+.+.+...|.+|
T Consensus 7 ~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~ 46 (66)
T PF00191_consen 7 HAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKD 46 (66)
T ss_dssp HHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-
T ss_pred HHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHH
Confidence 3455556667777888888888888888888888887654
No 175
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=24.54 E-value=7.7e+02 Score=25.21 Aligned_cols=63 Identities=13% Similarity=0.177 Sum_probs=35.2
Q ss_pred HHHHHHHHccCchhhhhcccccccccCC---chhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhccCc
Q 022902 145 EFLQLCLLAKCYKAGLSVLEDDIYEINL---PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPM 208 (290)
Q Consensus 145 ~ll~lcL~ak~y~~Al~vl~~~i~~i~~---~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~P~ 208 (290)
++++...+++... |++.+++.|-+... ......|-|......+..+|+..|.+.++.....+.
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN 170 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 4444444444444 66666666654433 112222222333333334799999999999888664
No 176
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=24.47 E-value=2.6e+02 Score=28.82 Aligned_cols=106 Identities=15% Similarity=0.079 Sum_probs=71.5
Q ss_pred cHHHHHHHHHhhCCC-CCC--chhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHH
Q 022902 121 GVGPMLTAIRKIQSS-TEH--LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKAL 197 (290)
Q Consensus 121 ~i~~L~~Ai~r~~~~-~~~--LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~ 197 (290)
++..++.++.+...- ++. --|+-..|=..|-+-+.|+.|+....+.+.-.+ ...++|=-.|.||.-+|+.+.|.
T Consensus 433 A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~---k~~~~~asig~iy~llgnld~Ai 509 (611)
T KOG1173|consen 433 ALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP---KDASTHASIGYIYHLLGNLDKAI 509 (611)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC---CchhHHHHHHHHHHHhcChHHHH
Confidence 455577777665322 221 225566667778888999999988888765333 35788888999999999999999
Q ss_pred HHHHHhhc-cCccchhHHHHHHHHHHHHHHHHhcCC
Q 022902 198 ELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQ 232 (290)
Q Consensus 198 ~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~~G~ 232 (290)
++|..++- .|-+. +..|..|+.|=-+-...|.
T Consensus 510 d~fhKaL~l~p~n~---~~~~lL~~aie~~~~~~~~ 542 (611)
T KOG1173|consen 510 DHFHKALALKPDNI---FISELLKLAIEDSECKSGV 542 (611)
T ss_pred HHHHHHHhcCCccH---HHHHHHHHHHHhhhhhccc
Confidence 99999997 77642 1223344444443344444
No 177
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=24.36 E-value=41 Score=19.86 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.0
Q ss_pred HHhcHHHHHHHHHHhhc
Q 022902 189 GQKRFRKALELLHNVVT 205 (290)
Q Consensus 189 ~~k~~~~A~~~l~~ais 205 (290)
..+++++|.+||+.+..
T Consensus 17 ~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 17 VKKDLEKALEYYKKAAE 33 (36)
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 35799999999998763
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=23.77 E-value=5.6e+02 Score=23.32 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=42.1
Q ss_pred ccCchhhhhcccccccccCCchhH-HHHHHHHHHHHHHHhcHHHHHHHHHHhhcc-CccchhHHHHHHHHHHHHHH
Q 022902 153 AKCYKAGLSVLEDDIYEINLPRDF-FLYCYYGGMIFIGQKRFRKALELLHNVVTA-PMSSINAIAVEAYKKYILVS 226 (290)
Q Consensus 153 ak~y~~Al~vl~~~i~~i~~~~~~-l~Y~yygG~i~~~~k~~~~A~~~l~~ais~-P~~~~s~i~veAyKK~iLv~ 226 (290)
.+..+.|..|++.-.-.++...++ +.|.-| .+..++-+.|...||++++. |...- +..-||||+=..
T Consensus 49 ~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~----l~~~~d~~~aR~lfer~i~~l~~~~~---~~~iw~~~i~fE 117 (280)
T PF05843_consen 49 NKDPKRARKIFERGLKKFPSDPDFWLEYLDF----LIKLNDINNARALFERAISSLPKEKQ---SKKIWKKFIEFE 117 (280)
T ss_dssp CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH----HHHTT-HHHHHHHHHHHCCTSSCHHH---CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH----HHHhCcHHHHHHHHHHHHHhcCchhH---HHHHHHHHHHHH
Confidence 667777899988876656543333 333332 25678999999999999984 43211 445577776665
No 179
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=22.61 E-value=96 Score=33.72 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 126 LTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 126 ~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais 205 (290)
|..+..++|+-...- -.|+..+...+.++.|..+++..+-..+ +.++++||.|+++-..+++.+|.-. .++.
T Consensus 20 r~~~~~~~p~n~~a~---~~Li~~~~~~~~~deai~i~~~~l~~~P---~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~ 91 (906)
T PRK14720 20 RADANNYSLSKFKEL---DDLIDAYKSENLTDEAKDICEEHLKEHK---KSISALYISGILSLSRRPLNDSNLL--NLID 91 (906)
T ss_pred hcccccCCcchHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHhCC---cceehHHHHHHHHHhhcchhhhhhh--hhhh
Q ss_pred cCccchhHHHHHHHHHHHH
Q 022902 206 APMSSINAIAVEAYKKYIL 224 (290)
Q Consensus 206 ~P~~~~s~i~veAyKK~iL 224 (290)
.....-..-.||-+-+-++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~ 110 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKIL 110 (906)
T ss_pred hcccccchhHHHHHHHHHH
No 180
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.60 E-value=96 Score=31.59 Aligned_cols=27 Identities=22% Similarity=0.549 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhhcc
Q 022902 180 CYYGGMIFIGQKRFRKALELLHNVVTA 206 (290)
Q Consensus 180 ~yygG~i~~~~k~~~~A~~~l~~ais~ 206 (290)
|||-+..|.+.++|.+|+.+|.+|.+.
T Consensus 425 C~~iA~sY~a~~K~~EAlALy~Ra~sy 451 (593)
T KOG2460|consen 425 CFYIAVSYQAKKKYSEALALYVRAYSY 451 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999874
No 181
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=22.51 E-value=4.1e+02 Score=21.29 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchh-hhhccccccccc----CCchhHHHHHHHHHHHHHHHhcHHHH
Q 022902 122 VGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKA-GLSVLEDDIYEI----NLPRDFFLYCYYGGMIFIGQKRFRKA 196 (290)
Q Consensus 122 i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~-Al~vl~~~i~~i----~~~~~~l~Y~yygG~i~~~~k~~~~A 196 (290)
...|..+++++...+.. ---.-++++|+..-.+.. +. +|+.+ .-...+..||=-=+..+...++|++|
T Consensus 46 ~~lLer~~~~f~~~~~Y--~nD~RylkiWi~ya~~~~~~~-----~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A 118 (126)
T PF08311_consen 46 LELLERCIRKFKDDERY--KNDERYLKIWIKYADLSSDPR-----EIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKA 118 (126)
T ss_dssp HHHHHHHHHHHTTSGGG--TT-HHHHHHHHHHHTTBSHHH-----HHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHhhhHhh--cCCHHHHHHHHHHHHHccCHH-----HHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 45677788888654321 123678888887544433 11 12222 01445566666667788899999999
Q ss_pred HHHHHHhh
Q 022902 197 LELLHNVV 204 (290)
Q Consensus 197 ~~~l~~ai 204 (290)
.+.|+..|
T Consensus 119 ~~I~~~Gi 126 (126)
T PF08311_consen 119 DEIYQLGI 126 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99998765
No 182
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.35 E-value=6.8e+02 Score=25.60 Aligned_cols=99 Identities=20% Similarity=0.270 Sum_probs=60.2
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHH
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR 194 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~ 194 (290)
.+...-+|.-+..||.| +|+...+=+.- .-+.++-..|..|+.=-++-| +.+ ..+..=|..-|.++-++|+|+
T Consensus 371 ~gdy~~Av~~YteAIkr-~P~Da~lYsNR---Aac~~kL~~~~~aL~Da~~~i-eL~--p~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKR-DPEDARLYSNR---AACYLKLGEYPEALKDAKKCI-ELD--PNFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred ccCHHHHHHHHHHHHhc-CCchhHHHHHH---HHHHHHHhhHHHHHHHHHHHH-hcC--chHHHHHHHHHHHHHHHHHHH
Confidence 34555678888888876 56654443321 123333444555544333333 122 245666667799999999999
Q ss_pred HHHHHHHHhhc-cCccchhHHHHHHHHHHH
Q 022902 195 KALELLHNVVT-APMSSINAIAVEAYKKYI 223 (290)
Q Consensus 195 ~A~~~l~~ais-~P~~~~s~i~veAyKK~i 223 (290)
+|.+.|+.++. -|.. .=.++.|++-+
T Consensus 444 kAleay~eale~dp~~---~e~~~~~~rc~ 470 (539)
T KOG0548|consen 444 KALEAYQEALELDPSN---AEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHHhcCchh---HHHHHHHHHHH
Confidence 99999999997 5652 33344555543
No 183
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=21.85 E-value=2.8e+02 Score=27.39 Aligned_cols=78 Identities=23% Similarity=0.421 Sum_probs=48.2
Q ss_pred HhcHHHHHHHHHHhhccC--------------------ccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhh
Q 022902 190 QKRFRKALELLHNVVTAP--------------------MSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNL 249 (290)
Q Consensus 190 ~k~~~~A~~~l~~ais~P--------------------~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~ 249 (290)
-.+|++|...-..++.-| .+..-.|++.|-|+|+=-. +|..| +|...+ -|
T Consensus 247 eeNf~EA~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~fwi~~~alk~F~~~~---~g~lP--l~G~lP-----DM 316 (425)
T cd01493 247 EENFEEAIKAVNKALNRTKIPSSVEEIFNDDRCENLTSQSSSFWIMARALKEFVAEE---NGLLP--LPGTLP-----DM 316 (425)
T ss_pred ccchHHHHHHHHHhhCCCCCcHHHHHHHhchhcccCCCCCchHHHHHHHHHHHHHhc---CCCCC--CCCCCC-----CC
Confidence 346888887777766433 1223477888999886442 45554 444322 34
Q ss_pred hhcchhHHHHHHHhcC---CChHHHHHHHHH
Q 022902 250 KNFSQPYMELVNTYNT---GKIVELETYVQT 277 (290)
Q Consensus 250 k~~~~pY~~la~af~~---~~~~~l~~~~~~ 277 (290)
++...-|.+|-+.|+. .|.+++.+.+.+
T Consensus 317 ~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~ 347 (425)
T cd01493 317 TADTEKYIKLQNIYREKAEKDAAEVEKYVRE 347 (425)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888864 456666665554
No 184
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=21.74 E-value=1.3e+02 Score=31.87 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 177 FLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 177 l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
+.=+|-.|.+...+.+|+.|..+|..|++ .|.+
T Consensus 519 ~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~ 552 (777)
T KOG1128|consen 519 LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN 552 (777)
T ss_pred hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc
Confidence 44567788999999999999999999999 8974
No 185
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=21.64 E-value=2.7e+02 Score=21.00 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc---chhHHHHHHHHH
Q 022902 177 FLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS---SINAIAVEAYKK 221 (290)
Q Consensus 177 l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~---~~s~i~veAyKK 221 (290)
..--|-.+..++..++|++|++-|..++. .|.. ..-+-+++.+.-
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~ 70 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL 70 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH
Confidence 36667889999999999999999999996 6663 444556655443
No 186
>PRK10941 hypothetical protein; Provisional
Probab=21.35 E-value=1.6e+02 Score=27.20 Aligned_cols=81 Identities=16% Similarity=0.076 Sum_probs=54.7
Q ss_pred CCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc---chh
Q 022902 137 EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS---SIN 212 (290)
Q Consensus 137 ~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~---~~s 212 (290)
+.+.-+-..|=..++..+.++.|+.+.+.-+.-.|. |-.+ .-=.|++|.-+++|+.|.+=|+.-|. +|.. .+-
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~--dp~e-~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPE--DPYE-IRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC--CHHH-HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 444555556666788999999999999986543332 1100 01189999999999999998888885 7764 333
Q ss_pred HHHHHHHH
Q 022902 213 AIAVEAYK 220 (290)
Q Consensus 213 ~i~veAyK 220 (290)
+.++++.+
T Consensus 255 k~ql~~l~ 262 (269)
T PRK10941 255 RAQIHSIE 262 (269)
T ss_pred HHHHHHHh
Confidence 44444433
No 187
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=21.26 E-value=8.8e+02 Score=24.70 Aligned_cols=40 Identities=10% Similarity=0.075 Sum_probs=28.2
Q ss_pred cHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhh
Q 022902 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGL 160 (290)
Q Consensus 121 ~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al 160 (290)
+...|...+.+.=|....=+..|..+++++|+--.|.|.+
T Consensus 159 s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P~L 198 (563)
T PF05327_consen 159 SPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCPEL 198 (563)
T ss_dssp GHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-GGG
T ss_pred CHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchHHH
Confidence 4555667777766666666788999999999999998766
No 188
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=21.21 E-value=1.5e+02 Score=29.75 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=45.6
Q ss_pred HHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCccchh
Q 022902 150 CLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSIN 212 (290)
Q Consensus 150 cL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~~~s 212 (290)
.+..+.++.|++.++.=|-..| +.--|.=+.|-|++..++.++|.+.|+.++. -|...+-
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P---~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l 376 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQP---DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL 376 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH
Confidence 4556677777777776444433 4455677899999999999999999999998 7886433
No 189
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=21.13 E-value=79 Score=17.68 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=12.5
Q ss_pred HHHHHhcHHHHHHHHHHh
Q 022902 186 IFIGQKRFRKALELLHNV 203 (290)
Q Consensus 186 i~~~~k~~~~A~~~l~~a 203 (290)
.|+..++|++|.++|+.-
T Consensus 9 ~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 9 GYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHccchHHHHHHHHHHH
Confidence 356677788887777654
No 190
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=20.64 E-value=1.1e+03 Score=25.67 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=78.8
Q ss_pred HhHHHHHHHHHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhccccc------------
Q 022902 99 EKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDD------------ 166 (290)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~------------ 166 (290)
+++-.+.+.+++.-...+.-.+++..|..++.+.. +..=-+-|..+..+.++-+.|+.|+..+-..
T Consensus 277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~--~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~ 354 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEK--DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW 354 (895)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc--ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh
Confidence 45666666666544444555778889999988432 2223578899999999999999998765332
Q ss_pred ------------ccccCC-------------------------------------chhHHHHHHHHHHHHHHHhcHHHHH
Q 022902 167 ------------IYEINL-------------------------------------PRDFFLYCYYGGMIFIGQKRFRKAL 197 (290)
Q Consensus 167 ------------i~~i~~-------------------------------------~~~~l~Y~yygG~i~~~~k~~~~A~ 197 (290)
+++++. ..|.-..++=.+-.|+-.++|.+|+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al 434 (895)
T KOG2076|consen 355 DTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEAL 434 (895)
T ss_pred hhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 112211 4566777888888999999999999
Q ss_pred HHHHHhhccCcc
Q 022902 198 ELLHNVVTAPMS 209 (290)
Q Consensus 198 ~~l~~ais~P~~ 209 (290)
.+|...++-|..
T Consensus 435 ~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 435 RLLSPITNREGY 446 (895)
T ss_pred HHHHHHhcCccc
Confidence 999999998873
No 191
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=20.57 E-value=88 Score=19.45 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=15.3
Q ss_pred hcHHHHHHHHHHhhc-cCc
Q 022902 191 KRFRKALELLHNVVT-APM 208 (290)
Q Consensus 191 k~~~~A~~~l~~ais-~P~ 208 (290)
|++++|...|++.|. +|.
T Consensus 1 kE~dRAR~IyeR~v~~hp~ 19 (32)
T PF02184_consen 1 KEFDRARSIYERFVLVHPE 19 (32)
T ss_pred ChHHHHHHHHHHHHHhCCC
Confidence 578999999999986 665
No 192
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=20.05 E-value=4.4e+02 Score=29.30 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 022902 122 VGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLH 201 (290)
Q Consensus 122 i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~ 201 (290)
|.=.++| +|.||.. +-.-.-+-+.+..++.|..|+++.++.+. +++...+-+ |.-+.+-+.+++|++|.+.++
T Consensus 582 V~~fQsA-LR~dPkD---~n~W~gLGeAY~~sGry~~AlKvF~kAs~-LrP~s~y~~--fk~A~~ecd~GkYkeald~l~ 654 (1238)
T KOG1127|consen 582 VCEFQSA-LRTDPKD---YNLWLGLGEAYPESGRYSHALKVFTKASL-LRPLSKYGR--FKEAVMECDNGKYKEALDALG 654 (1238)
T ss_pred HHHHHHH-hcCCchh---HHHHHHHHHHHHhcCceehHHHhhhhhHh-cCcHhHHHH--HHHHHHHHHhhhHHHHHHHHH
Confidence 4445555 4567755 44446788999999999999999999763 444333344 456888999999999999999
Q ss_pred HhhccC
Q 022902 202 NVVTAP 207 (290)
Q Consensus 202 ~ais~P 207 (290)
.+|-.-
T Consensus 655 ~ii~~~ 660 (1238)
T KOG1127|consen 655 LIIYAF 660 (1238)
T ss_pred HHHHHH
Confidence 998753
Done!