Query 022902
Match_columns 290
No_of_seqs 127 out of 222
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 13:03:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_S RPN3, 26S proteasome re 100.0 2E-29 6.8E-34 247.0 10.4 230 49-289 130-378 (523)
2 3t5v_B Nuclear mRNA export pro 99.4 1.4E-11 4.7E-16 119.8 21.3 139 142-287 178-330 (455)
3 3t5x_A PCI domain-containing p 99.4 1.1E-12 3.9E-17 114.6 10.2 106 173-289 10-116 (203)
4 3txn_A 26S proteasome regulato 98.3 9.8E-06 3.3E-10 77.3 14.5 163 122-287 122-290 (394)
5 4b4t_P 26S proteasome regulato 98.0 1E-05 3.4E-10 78.1 8.2 180 103-287 138-327 (445)
6 4b4t_Q 26S proteasome regulato 97.6 0.00037 1.3E-08 64.1 10.5 176 107-287 140-330 (434)
7 2xev_A YBGF; tetratricopeptide 97.2 0.0027 9.1E-08 47.9 10.2 96 114-210 14-110 (129)
8 2ho1_A Type 4 fimbrial biogene 97.0 0.071 2.4E-06 44.6 17.6 156 112-284 81-241 (252)
9 4b4t_R RPN7, 26S proteasome re 96.8 0.0099 3.4E-07 56.7 11.8 168 115-285 144-319 (429)
10 3gyz_A Chaperone protein IPGC; 96.6 0.015 5E-07 47.2 10.1 128 74-209 7-137 (151)
11 2vgx_A Chaperone SYCD; alterna 96.4 0.027 9.2E-07 44.8 10.4 92 111-209 30-122 (148)
12 2xcb_A PCRH, regulatory protei 96.4 0.025 8.4E-07 44.1 9.9 102 112-220 28-131 (142)
13 1elr_A TPR2A-domain of HOP; HO 96.3 0.02 6.9E-07 42.2 8.6 91 113-207 15-110 (131)
14 3sz7_A HSC70 cochaperone (SGT) 96.3 0.029 9.8E-07 44.6 10.1 91 113-210 22-113 (164)
15 4gco_A Protein STI-1; structur 96.3 0.02 7E-07 44.3 8.8 94 109-209 20-114 (126)
16 3upv_A Heat shock protein STI1 96.2 0.035 1.2E-06 41.8 9.5 87 113-206 15-102 (126)
17 3ulq_A Response regulator aspa 96.2 0.053 1.8E-06 49.1 12.3 165 114-284 115-296 (383)
18 2fbn_A 70 kDa peptidylprolyl i 96.2 0.042 1.4E-06 45.0 10.6 93 114-209 50-155 (198)
19 1hxi_A PEX5, peroxisome target 96.1 0.019 6.5E-07 44.0 7.8 88 114-208 29-117 (121)
20 3ieg_A DNAJ homolog subfamily 96.1 0.21 7.2E-06 43.3 15.3 98 109-209 241-339 (359)
21 3ro3_A PINS homolog, G-protein 96.0 0.071 2.4E-06 40.4 10.7 98 108-205 55-157 (164)
22 3ro2_A PINS homolog, G-protein 96.0 0.12 4.2E-06 44.0 13.2 163 118-286 159-337 (338)
23 3k9i_A BH0479 protein; putativ 96.0 0.011 3.8E-07 44.5 5.8 90 116-209 4-94 (117)
24 3qky_A Outer membrane assembly 96.0 0.019 6.5E-07 49.1 7.9 95 114-209 27-130 (261)
25 2vyi_A SGTA protein; chaperone 96.0 0.082 2.8E-06 38.7 10.5 89 114-209 24-113 (131)
26 4gcn_A Protein STI-1; structur 96.0 0.021 7.3E-07 44.1 7.5 96 108-208 14-115 (127)
27 1elw_A TPR1-domain of HOP; HOP 96.0 0.069 2.4E-06 38.4 9.9 89 114-209 16-105 (118)
28 3q15_A PSP28, response regulat 95.9 0.12 4E-06 46.9 13.4 168 114-287 113-296 (378)
29 3gw4_A Uncharacterized protein 95.9 0.087 3E-06 42.3 11.1 127 74-206 44-176 (203)
30 3nf1_A KLC 1, kinesin light ch 95.9 0.71 2.4E-05 39.1 18.5 98 108-205 117-223 (311)
31 2dba_A Smooth muscle cell asso 95.8 0.043 1.5E-06 41.6 8.5 92 114-209 40-132 (148)
32 3rkv_A Putative peptidylprolyl 95.8 0.02 6.9E-07 45.4 6.6 68 139-209 62-130 (162)
33 3q49_B STIP1 homology and U bo 95.7 0.056 1.9E-06 40.8 8.7 88 114-208 21-109 (137)
34 2lni_A Stress-induced-phosphop 95.6 0.056 1.9E-06 40.0 8.3 90 113-209 27-117 (133)
35 3u4t_A TPR repeat-containing p 95.6 0.15 5E-06 43.0 11.8 88 116-208 17-106 (272)
36 2kat_A Uncharacterized protein 95.6 0.041 1.4E-06 40.9 7.5 82 121-209 4-86 (115)
37 1na0_A Designed protein CTPR3; 95.6 0.12 4E-06 37.4 9.8 90 113-209 20-110 (125)
38 2ifu_A Gamma-SNAP; membrane fu 95.6 0.095 3.3E-06 46.4 10.9 159 110-279 84-258 (307)
39 4b4t_O 26S proteasome regulato 95.5 0.022 7.7E-07 53.7 6.9 135 144-280 131-275 (393)
40 3ro2_A PINS homolog, G-protein 95.5 0.11 3.6E-06 44.4 10.7 113 112-225 15-132 (338)
41 4a1s_A PINS, partner of inscut 95.5 0.5 1.7E-05 42.4 15.5 162 118-285 199-376 (411)
42 3sf4_A G-protein-signaling mod 95.4 0.056 1.9E-06 48.2 9.0 112 112-223 19-134 (406)
43 4i17_A Hypothetical protein; T 95.4 0.05 1.7E-06 45.3 8.0 97 108-208 48-149 (228)
44 3ro3_A PINS homolog, G-protein 95.4 0.066 2.2E-06 40.6 8.1 92 114-205 21-117 (164)
45 3qky_A Outer membrane assembly 95.4 0.81 2.8E-05 38.7 15.9 94 115-209 110-228 (261)
46 2e2e_A Formate-dependent nitri 95.3 0.15 5.1E-06 40.5 10.3 90 113-209 55-148 (177)
47 3uq3_A Heat shock protein STI1 95.2 0.3 1E-05 40.3 12.2 158 113-282 49-237 (258)
48 2pl2_A Hypothetical conserved 95.2 0.08 2.7E-06 44.4 8.7 87 115-208 18-116 (217)
49 2vq2_A PILW, putative fimbrial 95.2 0.97 3.3E-05 36.2 17.6 85 116-205 56-141 (225)
50 3edt_B KLC 2, kinesin light ch 95.1 0.29 9.9E-06 40.8 12.1 99 108-206 91-198 (283)
51 1a17_A Serine/threonine protei 95.1 0.19 6.6E-06 38.7 10.2 89 114-209 25-114 (166)
52 2l6j_A TPR repeat-containing p 95.1 0.089 3E-06 38.0 7.7 82 142-226 6-88 (111)
53 1qqe_A Vesicular transport pro 95.1 0.14 4.8E-06 44.9 10.3 165 108-281 83-266 (292)
54 2pzi_A Probable serine/threoni 95.1 0.13 4.4E-06 51.4 11.2 143 114-275 403-557 (681)
55 3urz_A Uncharacterized protein 95.0 0.38 1.3E-05 39.8 12.5 97 108-209 60-190 (208)
56 2vq2_A PILW, putative fimbrial 94.9 0.16 5.5E-06 41.0 9.6 95 108-207 82-178 (225)
57 2kck_A TPR repeat; tetratricop 94.9 0.05 1.7E-06 38.9 5.8 90 114-208 18-109 (112)
58 3sf4_A G-protein-signaling mod 94.9 1 3.6E-05 39.7 15.7 154 74-234 205-364 (406)
59 3vtx_A MAMA; tetratricopeptide 94.8 0.18 6E-06 40.2 9.5 90 113-209 50-140 (184)
60 4eqf_A PEX5-related protein; a 94.8 0.13 4.3E-06 45.8 9.4 157 112-285 187-360 (365)
61 4a1s_A PINS, partner of inscut 94.8 0.76 2.6E-05 41.1 14.8 94 112-205 96-211 (411)
62 2yhc_A BAMD, UPF0169 lipoprote 94.8 0.17 5.7E-06 42.5 9.6 95 114-209 16-129 (225)
63 1hh8_A P67PHOX, NCF-2, neutrop 94.7 0.2 7E-06 40.7 9.8 95 111-209 46-154 (213)
64 2kc7_A BFR218_protein; tetratr 94.7 0.081 2.8E-06 37.9 6.5 61 146-209 6-68 (99)
65 4b4t_Q 26S proteasome regulato 94.7 0.41 1.4E-05 43.4 12.8 128 74-208 73-207 (434)
66 3nf1_A KLC 1, kinesin light ch 94.7 0.16 5.6E-06 43.2 9.5 97 110-206 77-182 (311)
67 2xev_A YBGF; tetratricopeptide 94.7 0.058 2E-06 40.2 5.8 67 143-209 5-72 (129)
68 3ma5_A Tetratricopeptide repea 94.7 0.066 2.2E-06 39.3 6.0 67 140-209 7-74 (100)
69 1p5q_A FKBP52, FK506-binding p 94.7 0.12 4.1E-06 46.8 9.0 98 108-209 153-263 (336)
70 3edt_B KLC 2, kinesin light ch 94.6 0.22 7.6E-06 41.5 10.0 99 108-206 133-281 (283)
71 1kt0_A FKBP51, 51 kDa FK506-bi 94.6 0.12 4.1E-06 49.0 9.2 99 108-209 274-384 (457)
72 3q15_A PSP28, response regulat 94.5 0.78 2.7E-05 41.3 14.1 98 108-205 147-250 (378)
73 2ho1_A Type 4 fimbrial biogene 94.5 0.18 6.3E-06 41.9 9.2 94 111-209 114-208 (252)
74 1ihg_A Cyclophilin 40; ppiase 94.4 0.088 3E-06 48.7 7.6 94 113-209 234-340 (370)
75 3u4t_A TPR repeat-containing p 94.4 0.077 2.6E-06 44.8 6.7 158 108-282 80-251 (272)
76 3ulq_A Response regulator aspa 94.4 1.2 4.2E-05 39.9 15.0 98 108-205 149-252 (383)
77 2pl2_A Hypothetical conserved 94.3 0.13 4.4E-06 43.1 7.8 87 116-210 98-185 (217)
78 3as5_A MAMA; tetratricopeptide 94.2 0.39 1.3E-05 37.2 10.0 91 112-209 52-143 (186)
79 4i17_A Hypothetical protein; T 94.2 0.71 2.4E-05 38.0 12.1 90 114-209 19-109 (228)
80 3gw4_A Uncharacterized protein 94.1 0.42 1.4E-05 38.1 10.2 95 111-205 35-135 (203)
81 3hym_B Cell division cycle pro 94.1 0.16 5.6E-06 43.6 8.2 91 114-208 171-268 (330)
82 3u3w_A Transcriptional activat 94.1 0.71 2.4E-05 40.1 12.4 94 112-205 165-265 (293)
83 1na3_A Designed protein CTPR2; 94.0 0.15 5E-06 35.4 6.5 67 140-209 9-76 (91)
84 3ieg_A DNAJ homolog subfamily 94.0 0.93 3.2E-05 39.1 13.0 90 115-208 167-266 (359)
85 3as5_A MAMA; tetratricopeptide 93.9 0.24 8.2E-06 38.4 8.2 92 111-209 85-177 (186)
86 2y4t_A DNAJ homolog subfamily 93.9 1.8 6.1E-05 39.1 15.3 97 109-209 264-362 (450)
87 3vtx_A MAMA; tetratricopeptide 93.9 0.25 8.4E-06 39.3 8.4 88 114-208 85-173 (184)
88 4gyw_A UDP-N-acetylglucosamine 93.8 0.48 1.6E-05 48.1 12.1 95 108-209 15-110 (723)
89 2qfc_A PLCR protein; TPR, HTH, 93.7 0.29 9.9E-06 42.6 9.2 94 113-206 126-225 (293)
90 3uq3_A Heat shock protein STI1 93.7 0.23 7.9E-06 41.0 8.1 91 108-205 145-235 (258)
91 2ond_A Cleavage stimulation fa 93.7 2.1 7.1E-05 37.4 14.9 82 119-206 81-163 (308)
92 2y4t_A DNAJ homolog subfamily 93.7 2.2 7.4E-05 38.5 15.4 156 112-279 187-356 (450)
93 1fch_A Peroxisomal targeting s 93.6 0.2 6.8E-06 44.1 8.0 153 116-285 195-363 (368)
94 2xpi_A Anaphase-promoting comp 93.6 2.5 8.7E-05 39.7 16.2 96 111-209 484-583 (597)
95 3mkr_A Coatomer subunit epsilo 93.6 0.31 1.1E-05 43.0 9.3 91 108-209 71-163 (291)
96 4ga2_A E3 SUMO-protein ligase 93.5 0.11 3.7E-06 41.1 5.5 84 119-209 14-98 (150)
97 2fo7_A Synthetic consensus TPR 93.5 0.28 9.6E-06 35.6 7.5 84 115-205 14-97 (136)
98 2dba_A Smooth muscle cell asso 93.5 0.13 4.6E-06 38.8 5.8 70 140-209 28-98 (148)
99 2qfc_A PLCR protein; TPR, HTH, 93.4 0.11 3.6E-06 45.5 5.8 99 108-206 161-266 (293)
100 2fo7_A Synthetic consensus TPR 93.4 0.3 1E-05 35.4 7.5 87 114-207 47-134 (136)
101 3mkr_A Coatomer subunit epsilo 93.4 0.86 2.9E-05 40.1 11.8 96 109-209 137-233 (291)
102 3urz_A Uncharacterized protein 93.2 0.15 5.2E-06 42.3 6.1 66 141-209 55-121 (208)
103 3gyz_A Chaperone protein IPGC; 93.1 0.17 5.7E-06 40.8 6.1 67 141-210 37-104 (151)
104 2c2l_A CHIP, carboxy terminus 93.1 0.41 1.4E-05 41.9 9.1 90 112-208 14-104 (281)
105 2q7f_A YRRB protein; TPR, prot 93.0 0.56 1.9E-05 38.4 9.4 92 111-209 100-192 (243)
106 1qqe_A Vesicular transport pro 93.0 1.3 4.3E-05 38.6 12.2 102 108-209 123-232 (292)
107 1xnf_A Lipoprotein NLPI; TPR, 93.0 0.7 2.4E-05 38.5 10.1 90 113-209 54-144 (275)
108 4gcn_A Protein STI-1; structur 92.9 0.18 6.1E-06 38.7 5.7 65 142-209 10-75 (127)
109 1wao_1 Serine/threonine protei 92.8 0.37 1.3E-05 46.0 9.0 89 115-210 19-108 (477)
110 2xcb_A PCRH, regulatory protei 92.7 0.21 7.1E-06 38.6 6.0 66 141-209 19-85 (142)
111 2vgx_A Chaperone SYCD; alterna 92.7 0.21 7.2E-06 39.4 6.1 68 140-210 21-89 (148)
112 1fch_A Peroxisomal targeting s 92.7 0.52 1.8E-05 41.3 9.3 94 109-209 224-318 (368)
113 3qou_A Protein YBBN; thioredox 92.7 0.55 1.9E-05 41.1 9.3 94 111-208 126-251 (287)
114 2q7f_A YRRB protein; TPR, prot 92.6 0.21 7.2E-06 41.0 6.2 94 109-209 132-226 (243)
115 1hxi_A PEX5, peroxisome target 92.5 0.21 7E-06 38.0 5.6 65 142-209 19-84 (121)
116 3upv_A Heat shock protein STI1 92.5 0.22 7.5E-06 37.2 5.6 65 142-209 6-71 (126)
117 4abn_A Tetratricopeptide repea 92.5 1.1 3.6E-05 42.5 11.7 92 110-209 110-212 (474)
118 2h6f_A Protein farnesyltransfe 92.4 0.3 1E-05 45.5 7.6 91 112-209 141-233 (382)
119 3hym_B Cell division cycle pro 92.4 4.1 0.00014 34.5 14.6 84 115-205 138-221 (330)
120 3q49_B STIP1 homology and U bo 92.2 0.24 8.2E-06 37.1 5.6 67 140-209 9-76 (137)
121 4eqf_A PEX5-related protein; a 92.2 0.61 2.1E-05 41.2 9.1 93 109-208 220-313 (365)
122 1xnf_A Lipoprotein NLPI; TPR, 92.2 0.2 6.8E-06 42.0 5.6 87 120-209 23-110 (275)
123 3sz7_A HSC70 cochaperone (SGT) 92.2 0.23 7.8E-06 39.2 5.6 67 140-209 11-78 (164)
124 3u3w_A Transcriptional activat 92.1 0.39 1.3E-05 41.8 7.6 92 114-205 127-224 (293)
125 1elr_A TPR2A-domain of HOP; HO 92.1 0.5 1.7E-05 34.3 7.2 64 142-208 6-70 (131)
126 4abn_A Tetratricopeptide repea 92.1 0.38 1.3E-05 45.6 8.1 90 116-209 193-291 (474)
127 2yhc_A BAMD, UPF0169 lipoprote 92.1 0.22 7.5E-06 41.7 5.7 92 116-207 110-214 (225)
128 2gw1_A Mitochondrial precursor 92.0 4.6 0.00016 36.8 15.3 157 109-285 244-405 (514)
129 2ifu_A Gamma-SNAP; membrane fu 92.0 3.4 0.00012 36.1 13.8 101 108-209 122-227 (307)
130 2lni_A Stress-induced-phosphop 91.8 0.35 1.2E-05 35.5 6.0 70 137-209 13-83 (133)
131 2ond_A Cleavage stimulation fa 91.8 1.4 4.8E-05 38.5 11.0 155 113-287 110-276 (308)
132 3cv0_A Peroxisome targeting si 91.6 0.84 2.9E-05 39.0 9.1 87 115-208 185-272 (327)
133 4f3v_A ESX-1 secretion system 91.6 0.21 7.2E-06 45.1 5.3 95 107-207 107-201 (282)
134 1elw_A TPR1-domain of HOP; HOP 91.6 0.28 9.7E-06 35.0 5.1 64 142-208 6-70 (118)
135 4gco_A Protein STI-1; structur 91.5 0.31 1.1E-05 37.3 5.6 67 140-209 13-80 (126)
136 2r5s_A Uncharacterized protein 91.5 0.71 2.4E-05 36.8 8.0 124 76-208 7-140 (176)
137 1pc2_A Mitochondria fission pr 91.0 0.73 2.5E-05 37.8 7.6 54 155-209 50-104 (152)
138 1hh8_A P67PHOX, NCF-2, neutrop 90.8 0.33 1.1E-05 39.4 5.4 86 114-209 18-104 (213)
139 2kck_A TPR repeat; tetratricop 90.5 0.16 5.6E-06 36.0 2.9 64 142-208 8-72 (112)
140 4b0z_A RPN12, 26S proteasome r 90.5 0.53 1.8E-05 41.0 6.7 125 147-278 14-160 (229)
141 2vyi_A SGTA protein; chaperone 90.4 0.64 2.2E-05 33.6 6.2 66 141-209 13-79 (131)
142 2hr2_A Hypothetical protein; a 90.2 1.2 4.1E-05 36.7 8.3 93 114-209 23-135 (159)
143 1a17_A Serine/threonine protei 90.1 1.8 6.1E-05 32.9 8.9 90 111-205 56-145 (166)
144 3fp2_A TPR repeat-containing p 89.8 2.6 8.9E-05 38.9 11.3 92 110-208 318-410 (537)
145 4ga2_A E3 SUMO-protein ligase 89.7 0.58 2E-05 36.7 5.8 89 114-209 43-133 (150)
146 2if4_A ATFKBP42; FKBP-like, al 89.6 0.52 1.8E-05 42.6 6.2 94 112-209 189-297 (338)
147 1w3b_A UDP-N-acetylglucosamine 89.6 1.1 3.9E-05 39.8 8.4 61 142-205 69-129 (388)
148 3k9i_A BH0479 protein; putativ 89.4 0.44 1.5E-05 35.4 4.7 57 153-209 3-60 (117)
149 2xpi_A Anaphase-promoting comp 89.3 1.4 4.8E-05 41.5 9.2 47 116-166 421-467 (597)
150 1hz4_A MALT regulatory protein 89.3 5.1 0.00017 35.3 12.5 95 112-206 103-203 (373)
151 4gyw_A UDP-N-acetylglucosamine 89.0 0.81 2.8E-05 46.4 7.6 92 111-209 52-144 (723)
152 1w3b_A UDP-N-acetylglucosamine 89.0 2.6 9E-05 37.4 10.4 145 114-277 215-364 (388)
153 2vsy_A XCC0866; transferase, g 88.9 1.7 5.7E-05 41.6 9.5 86 116-208 37-123 (568)
154 1na0_A Designed protein CTPR3; 88.6 0.85 2.9E-05 32.6 5.6 67 140-209 9-76 (125)
155 3cv0_A Peroxisome targeting si 87.9 1.5 5.1E-05 37.3 7.6 87 116-209 35-122 (327)
156 1ouv_A Conserved hypothetical 87.8 1.3 4.4E-05 37.5 7.1 81 115-206 55-143 (273)
157 2h6f_A Protein farnesyltransfe 87.8 1.1 3.9E-05 41.5 7.2 97 107-210 171-274 (382)
158 2gw1_A Mitochondrial precursor 87.7 1.8 6.1E-05 39.6 8.5 90 111-208 15-105 (514)
159 2e2e_A Formate-dependent nitri 87.3 1.5 5E-05 34.5 6.8 88 115-209 23-114 (177)
160 2r5s_A Uncharacterized protein 87.2 0.97 3.3E-05 36.0 5.6 80 121-205 93-172 (176)
161 3fp2_A TPR repeat-containing p 87.0 3.7 0.00013 37.8 10.3 90 111-208 34-124 (537)
162 2ooe_A Cleavage stimulation fa 86.8 11 0.00037 35.4 13.7 83 120-208 304-387 (530)
163 3rkv_A Putative peptidylprolyl 85.6 0.86 2.9E-05 35.6 4.4 66 144-209 15-96 (162)
164 2c2l_A CHIP, carboxy terminus 85.5 1.1 3.8E-05 39.0 5.6 65 142-209 6-71 (281)
165 2ooe_A Cleavage stimulation fa 85.5 5.3 0.00018 37.6 10.8 156 110-284 329-495 (530)
166 2fbn_A 70 kDa peptidylprolyl i 85.3 1.6 5.4E-05 35.3 6.1 68 142-209 40-121 (198)
167 1zu2_A Mitochondrial import re 84.9 1.1 3.6E-05 37.0 4.8 61 155-218 61-133 (158)
168 1hz4_A MALT regulatory protein 84.8 10 0.00035 33.3 11.7 91 114-205 227-321 (373)
169 1ouv_A Conserved hypothetical 84.4 2.4 8.3E-05 35.7 7.1 81 115-206 91-179 (273)
170 3ma5_A Tetratricopeptide repea 82.8 2 6.7E-05 31.0 5.1 34 177-210 7-41 (100)
171 1nzn_A CGI-135 protein, fissio 82.6 1.3 4.4E-05 35.2 4.2 35 175-209 72-107 (126)
172 3n71_A Histone lysine methyltr 82.5 4.5 0.00016 38.9 8.9 91 114-205 321-421 (490)
173 2v5f_A Prolyl 4-hydroxylase su 82.0 3.4 0.00012 30.3 6.2 32 178-209 47-79 (104)
174 4f3v_A ESX-1 secretion system 81.9 2.1 7E-05 38.5 5.8 64 140-207 102-165 (282)
175 3ly7_A Transcriptional activat 81.9 13 0.00043 34.8 11.3 65 140-208 277-342 (372)
176 1na3_A Designed protein CTPR2; 80.2 2.2 7.7E-05 28.9 4.4 35 175-209 7-42 (91)
177 2pzi_A Probable serine/threoni 79.9 3.7 0.00013 40.8 7.4 88 114-209 479-567 (681)
178 2vsy_A XCC0866; transferase, g 79.2 5.7 0.00019 37.9 8.3 93 109-208 64-160 (568)
179 4g1t_A Interferon-induced prot 79.0 11 0.00036 34.2 9.8 98 121-222 319-418 (472)
180 3qou_A Protein YBBN; thioredox 78.5 2 6.9E-05 37.4 4.5 81 122-208 102-183 (287)
181 3o48_A Mitochondria fission 1 78.4 4.4 0.00015 32.5 6.0 36 174-209 75-111 (134)
182 1p5q_A FKBP52, FK506-binding p 77.2 4.3 0.00015 36.3 6.4 70 140-209 147-229 (336)
183 2l6j_A TPR repeat-containing p 77.0 1.4 5E-05 31.2 2.6 87 112-202 14-103 (111)
184 4g1t_A Interferon-induced prot 75.3 5.5 0.00019 36.2 6.7 89 114-209 187-280 (472)
185 3qwp_A SET and MYND domain-con 74.6 26 0.00089 32.8 11.4 56 149-204 296-356 (429)
186 2kat_A Uncharacterized protein 73.7 4.6 0.00016 29.2 4.7 33 177-209 19-52 (115)
187 2hr2_A Hypothetical protein; a 73.4 4.9 0.00017 33.0 5.2 64 143-206 14-86 (159)
188 3qww_A SET and MYND domain-con 72.5 4.7 0.00016 38.2 5.6 86 119-205 315-410 (433)
189 2v5f_A Prolyl 4-hydroxylase su 72.1 3.3 0.00011 30.4 3.6 28 179-206 7-34 (104)
190 1ihg_A Cyclophilin 40; ppiase 71.7 5.3 0.00018 36.5 5.6 67 143-209 226-306 (370)
191 3qwp_A SET and MYND domain-con 71.3 6.1 0.00021 37.2 6.1 87 118-205 303-399 (429)
192 1y8m_A FIS1; mitochondria, unk 71.2 3.4 0.00012 33.5 3.6 34 176-209 76-110 (144)
193 3bee_A Putative YFRE protein; 71.0 6 0.00021 28.8 4.8 50 156-208 25-75 (93)
194 1kt0_A FKBP51, 51 kDa FK506-bi 70.1 5.7 0.00019 37.2 5.6 69 141-209 269-350 (457)
195 3d9j_A RNA-binding protein 16; 68.2 40 0.0014 26.8 9.5 69 1-70 1-74 (145)
196 1klx_A Cysteine rich protein B 64.7 15 0.00051 28.1 6.2 75 121-206 44-126 (138)
197 1wao_1 Serine/threonine protei 61.5 4.4 0.00015 38.4 3.0 58 149-209 15-73 (477)
198 1xi4_A Clathrin heavy chain; a 59.9 1.7E+02 0.0057 32.5 14.9 58 140-205 1105-1162(1630)
199 3rjv_A Putative SEL1 repeat pr 59.6 13 0.00046 30.3 5.3 101 117-232 68-176 (212)
200 2xm6_A Protein corresponding t 59.4 20 0.00068 33.2 7.1 59 142-205 113-179 (490)
201 2kc7_A BFR218_protein; tetratr 58.6 9.7 0.00033 26.4 3.8 29 181-209 4-33 (99)
202 3ffl_A Anaphase-promoting comp 57.6 11 0.00039 31.1 4.4 61 145-205 25-91 (167)
203 3qww_A SET and MYND domain-con 55.3 8 0.00028 36.5 3.6 95 154-282 312-412 (433)
204 4gq2_M Nucleoporin NUP120; bet 49.9 24 0.00082 36.7 6.4 57 142-205 812-868 (950)
205 2if4_A ATFKBP42; FKBP-like, al 48.7 12 0.0004 33.4 3.4 67 143-209 182-263 (338)
206 4fhn_B Nucleoporin NUP120; pro 46.5 35 0.0012 36.1 7.1 60 139-205 811-870 (1139)
207 1klx_A Cysteine rich protein B 46.4 14 0.00047 28.3 3.1 74 120-206 13-90 (138)
208 3n71_A Histone lysine methyltr 45.6 18 0.0006 34.7 4.3 57 150-206 319-380 (490)
209 3u64_A Protein TP_0956; tetrat 45.4 13 0.00043 33.8 3.0 78 130-209 190-272 (301)
210 4gns_B Protein CSD3, chitin bi 43.5 71 0.0024 32.5 8.6 122 78-203 250-397 (754)
211 1xi4_A Clathrin heavy chain; a 43.5 44 0.0015 36.9 7.2 90 98-203 985-1075(1630)
212 3txn_A 26S proteasome regulato 42.6 75 0.0026 29.6 8.0 67 141-207 100-169 (394)
213 2xm6_A Protein corresponding t 41.8 56 0.0019 30.0 7.1 78 117-205 130-215 (490)
214 3rjv_A Putative SEL1 repeat pr 40.9 23 0.00078 28.8 3.8 29 177-205 18-46 (212)
215 3q7a_A Farnesyltransferase alp 37.1 1.9E+02 0.0066 26.2 9.8 125 92-229 45-174 (349)
216 3mv2_B Coatomer subunit epsilo 36.6 48 0.0016 29.9 5.5 92 108-205 142-239 (310)
217 3e4b_A ALGK; tetratricopeptide 36.4 82 0.0028 29.0 7.3 14 253-266 318-331 (452)
218 3dra_A Protein farnesyltransfe 31.2 93 0.0032 27.6 6.5 116 99-226 30-156 (306)
219 4b4t_R RPN7, 26S proteasome re 30.0 67 0.0023 29.8 5.5 86 122-207 110-198 (429)
220 1nwd_B GAD, glutamate decarbox 29.5 27 0.00092 19.6 1.6 14 210-223 9-22 (28)
221 3e4b_A ALGK; tetratricopeptide 28.8 2.3E+02 0.0078 25.8 9.0 13 254-266 355-367 (452)
222 3bqo_A Telomeric repeat-bindin 28.8 1.8E+02 0.0063 24.7 7.4 92 120-222 89-206 (211)
223 3c3r_A Programmed cell death 6 27.9 2.1E+02 0.0071 26.2 8.4 57 144-204 232-302 (380)
224 1b89_A Protein (clathrin heavy 27.3 59 0.002 31.0 4.6 99 115-228 74-189 (449)
225 3mv2_B Coatomer subunit epsilo 27.1 2.4E+02 0.008 25.2 8.4 83 121-208 85-167 (310)
226 1dce_A Protein (RAB geranylger 23.7 2.1E+02 0.0073 27.4 8.0 29 180-208 146-176 (567)
227 3dra_A Protein farnesyltransfe 21.4 78 0.0027 28.1 4.0 79 145-230 37-119 (306)
228 1zu2_A Mitochondrial import re 21.1 80 0.0027 25.5 3.7 53 154-209 16-79 (158)
229 4fu3_A Regulation of nuclear P 20.5 2.8E+02 0.0095 20.9 6.7 64 5-69 7-70 (135)
No 1
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-29 Score=246.97 Aligned_cols=230 Identities=12% Similarity=0.079 Sum_probs=143.9
Q ss_pred cCcchhHHHHHHHHHHhhhcccchhhhhhHHHHHH--HHHhcCChhhhhhhhHhHHHH---HHHHHHhHh----------
Q 022902 49 LDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIA--RFITSCSAEQIRYVPEKFINV---CKRYKDQVL---------- 113 (290)
Q Consensus 49 ldp~~~sl~~L~vL~a~~~~~~~~~~~~~l~~~v~--~fl~~f~~~Qlr~a~~~~~~l---~~~~~~~~~---------- 113 (290)
+-||+..+.+|.++..+++.+... ++..+...++ +.+..+|++.++....+.+.+ +++....+.
T Consensus 130 ~~pE~~~y~~lL~~i~L~d~k~~~-~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~ 208 (523)
T 4b4t_S 130 VTAEINCFMHLLVQLFLWDSKELE-QLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNI 208 (523)
T ss_dssp --------------------------------------------------------------------------CHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccccHH-HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchh
Confidence 458899899999999888866543 5667777776 789999999999888765553 333322111
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccC--CchhHHHHHHHHHHHHHHHh
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN--LPRDFFLYCYYGGMIFIGQK 191 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~--~~~~~l~Y~yygG~i~~~~k 191 (290)
.+++. -+..+|+|++|+|+.+ -+++|++++|+||..+.|++|.+++++..+... +.++.++|+||.|+|++.++
T Consensus 209 ~ir~~--Ll~~~rta~lr~D~~~--qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~ 284 (523)
T 4b4t_S 209 ILRST--MMKFLKIASLKHDNET--KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQL 284 (523)
T ss_dssp HHHTH--HHHHHHHCCSCSSSCH--HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHH--HHHHHHHHhcccCcch--hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhc
Confidence 12222 2577999999999865 599999999999999999999999999876432 36788999999999999999
Q ss_pred cHHHHHHHHHHhhc-cCcc-chhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhhhcchhHHHHHHHhcCCChH
Q 022902 192 RFRKALELLHNVVT-APMS-SINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIV 269 (290)
Q Consensus 192 ~~~~A~~~l~~ais-~P~~-~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k~~~~pY~~la~af~~~~~~ 269 (290)
+|.+|.++|+.|++ +|.+ ...++.++++|++|+|.||+ |++| +.+.++ +..++..+.||.+|++||+.||++
T Consensus 285 ~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLl-G~iP-~r~lf~----q~~l~~~L~pY~~Lv~Avr~GdL~ 358 (523)
T 4b4t_S 285 DYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLM-GDIP-ELSFFH----QSNMQKSLLPYYHLTKAVKLGDLK 358 (523)
T ss_dssp CHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHH-TCCC-CHHHHT----TTSCHHHHHHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhc-CCCC-ChHHhh----chhHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999998 8876 56799999999999999886 9999 754443 344555789999999999999999
Q ss_pred HHHHHHHHhHHhhhcccccc
Q 022902 270 ELETYVQTNREKFESVSYLL 289 (290)
Q Consensus 270 ~l~~~~~~~~~~f~~D~N~~ 289 (290)
+|++++++|++.|.+|||+.
T Consensus 359 ~F~~~L~~h~~~F~~Dgty~ 378 (523)
T 4b4t_S 359 KFTSTITKYKQLLLKDDTYQ 378 (523)
T ss_dssp HHHHHHHHTHHHHHHTTCTH
T ss_pred HHHHHHHHhcceeccCChhH
Confidence 99999999999999999974
No 2
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.4e-11 Score=119.75 Aligned_cols=139 Identities=12% Similarity=0.146 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHccCchhhhhccccc----c-cccC--CchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc--cCccc--
Q 022902 142 LHPEFLQLCLLAKCYKAGLSVLEDD----I-YEIN--LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT--APMSS-- 210 (290)
Q Consensus 142 ~H~~ll~lcL~ak~y~~Al~vl~~~----i-~~i~--~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais--~P~~~-- 210 (290)
+=+.+++.|.+-+..+.+..++..- . ..++ +..+..+|.||+|.+++...+|.+|.+.|..|+. +|..+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~ 257 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTN 257 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccc
Confidence 4477889999999999998887541 1 1122 2579999999999999999999999999999997 48653
Q ss_pred --hhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhhhcchh-HHHHHHHhcCCChHHHHHHHHHhHHhhhcccc
Q 022902 211 --INAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQP-YMELVNTYNTGKIVELETYVQTNREKFESVSY 287 (290)
Q Consensus 211 --~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k~~~~p-Y~~la~af~~~~~~~l~~~~~~~~~~f~~D~N 287 (290)
.++...-..|-+|.|+|+. |++| +. ...++.+.....| |.+|++|++.||+..|++++++|++.|.+||.
T Consensus 258 ~~~~~n~~~ILkyLIpv~LLl-G~~P-~~-----~ll~k~~~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gi 330 (455)
T 3t5v_B 258 QAITRNGTRILNYMIPTGLIL-GKMV-KW-----GPLRPFLSQETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQL 330 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCB-CH-----HHHGGGSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTC
T ss_pred hhhhhHHHHHHHHHHHHHHHc-CCCC-CH-----HHHcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCC
Confidence 4566667788888899775 9998 42 2233322123556 99999999999999999999999999999998
No 3
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=114.61 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=87.3
Q ss_pred chhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhhh
Q 022902 173 PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN 251 (290)
Q Consensus 173 ~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k~ 251 (290)
..+..+|.||.|++++..++|++|.+.|..|+. +|..+ ++......|-+|.|+|+ .|++| + ....+.++
T Consensus 10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~-~~~k~~IL~yLIp~~Ll-~G~iP-~------~~ll~~~~- 79 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS-QKNKRMILIYLLPVKML-LGHMP-T------VELLKKYH- 79 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHHHHH-TTCEE-C------HHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH-HHHHHHHHHHHHHHHHH-cCCCC-C------HHHhhhCc-
Confidence 678999999999999999999999999999998 67543 44555566777777766 59988 4 22333343
Q ss_pred cchhHHHHHHHhcCCChHHHHHHHHHhHHhhhcccccc
Q 022902 252 FSQPYMELVNTYNTGKIVELETYVQTNREKFESVSYLL 289 (290)
Q Consensus 252 ~~~pY~~la~af~~~~~~~l~~~~~~~~~~f~~D~N~~ 289 (290)
..||.+|++|++.||+..|++++++|++.|.+||+++
T Consensus 80 -~~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~l 116 (203)
T 3t5x_A 80 -LMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFL 116 (203)
T ss_dssp -CGGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHH
T ss_pred -hhHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHH
Confidence 3589999999999999999999999999999999874
No 4
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.30 E-value=9.8e-06 Score=77.27 Aligned_cols=163 Identities=10% Similarity=0.097 Sum_probs=118.6
Q ss_pred HHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhccccccc---cc-CCchhHHHHHHHHHHHHH-HHhcHHHH
Q 022902 122 VGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIY---EI-NLPRDFFLYCYYGGMIFI-GQKRFRKA 196 (290)
Q Consensus 122 i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~---~i-~~~~~~l~Y~yygG~i~~-~~k~~~~A 196 (290)
+.-++.-+.+.|. +..+.-+|.+-.+.+...+++..+-..+.+.-. .+ +++.-.-.+..++|+.++ ..|+|++|
T Consensus 122 i~~l~~~~~~~dd-~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A 200 (394)
T 3txn_A 122 GAQLLRELKKLDD-KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTA 200 (394)
T ss_dssp HHHHHHHHTTSSC-THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHhcccc-chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHH
Confidence 4445555555554 677889999999999999999888877765321 11 346778999999999999 89999999
Q ss_pred HHHHHHhhccCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCC-CHHHHHhhhhcchhHHHHHHHhcCCChHHHHHHH
Q 022902 197 LELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYT-SSAAQRNLKNFSQPYMELVNTYNTGKIVELETYV 275 (290)
Q Consensus 197 ~~~l~~ais~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~-s~~~~r~~k~~~~pY~~la~af~~~~~~~l~~~~ 275 (290)
...|-.+.......-+.-..++.|-.+|+.++ .|..+ ++.+.. ++...+.-.+...+|.+++.+|..||..+|..++
T Consensus 201 ~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl-~~~r~-el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL 278 (394)
T 3txn_A 201 FSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM-LGQSD-DVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAAL 278 (394)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-TTCGG-GHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHH-cCCHH-HHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999988654445555566777656666655 56655 553211 2222222223456899999999999999999999
Q ss_pred HHhHHhhhcccc
Q 022902 276 QTNREKFESVSY 287 (290)
Q Consensus 276 ~~~~~~f~~D~N 287 (290)
+++++.|..|..
T Consensus 279 ~~~~~~l~~D~~ 290 (394)
T 3txn_A 279 KEYKKELAEDVI 290 (394)
T ss_dssp HHSTTTTTTSHH
T ss_pred HHHHHHHhcChH
Confidence 999999998864
No 5
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=1e-05 Score=78.11 Aligned_cols=180 Identities=8% Similarity=0.006 Sum_probs=129.2
Q ss_pred HHHHHHHHhHhhhccccccHHHHHHHHHhh--CCCCCCchhhHHHHHHHHHHccCchhhhhccccc---ccccC-CchhH
Q 022902 103 NVCKRYKDQVLLLEAPIRGVGPMLTAIRKI--QSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDD---IYEIN-LPRDF 176 (290)
Q Consensus 103 ~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~--~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~---i~~i~-~~~~~ 176 (290)
.+...+++...+.+....+...|.....-- ..+....+-++..-+|+|+..+.|..|..++.+- .+..+ .+.--
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 333444444444454444444444432211 1123457789999999999999999998888773 33333 35566
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhh----hc
Q 022902 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK----NF 252 (290)
Q Consensus 177 l~Y~yygG~i~~~~k~~~~A~~~l~~ais~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k----~~ 252 (290)
+.|+.++|.++...++|.+|..+|..+...|...-..-...+.++++++++|+.+..| . .+....+.++ ..
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~-~----~~~ll~~~~~~~~~~~ 292 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGN-L----QNDLIHKIQNDNNLKK 292 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSS-T----THHHHHSHHHHSSCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCc-h----HHHHHHHHhhcccccc
Confidence 9999999999999999999999999999888765555666678888889999875544 3 3444444443 23
Q ss_pred chhHHHHHHHhcCCChHHHHHHHHHhHHhhhcccc
Q 022902 253 SQPYMELVNTYNTGKIVELETYVQTNREKFESVSY 287 (290)
Q Consensus 253 ~~pY~~la~af~~~~~~~l~~~~~~~~~~f~~D~N 287 (290)
..+|.+++++|..+++.++..+.+.+...+..|..
T Consensus 293 l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~ 327 (445)
T 4b4t_P 293 LESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDL 327 (445)
T ss_dssp HHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCS
T ss_pred cHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccch
Confidence 56899999999999999999999998887777654
No 6
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00037 Score=64.11 Aligned_cols=176 Identities=8% Similarity=0.084 Sum_probs=118.1
Q ss_pred HHHHhHhhhccccccHHHHHHHHHhhCC--CCCCchhhHHHHHHHHHHccCchhhhhccccccc---ccC-CchhHHHHH
Q 022902 107 RYKDQVLLLEAPIRGVGPMLTAIRKIQS--STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIY---EIN-LPRDFFLYC 180 (290)
Q Consensus 107 ~~~~~~~~~~~p~~~i~~L~~Ai~r~~~--~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~---~i~-~~~~~l~Y~ 180 (290)
.++....+.+....++..+..++..... +......++....++|+..++|+.|...+++... .++ ++.....++
T Consensus 140 ~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 219 (434)
T 4b4t_Q 140 KLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELD 219 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Confidence 3444444556666678888877665532 2345778899999999999999999999887543 122 245568999
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHhhccCcc----chhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHH----H-hhhh
Q 022902 181 YYGGMIFIGQKRFRKALELLHNVVTAPMS----SINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQ----R-NLKN 251 (290)
Q Consensus 181 yygG~i~~~~k~~~~A~~~l~~ais~P~~----~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~----r-~~k~ 251 (290)
.++|.++...++|++|..+|..++..+.. .-......+.+..++...+. +... .. ...... + ....
T Consensus 220 ~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~-~~---~~~~~~~~~~~~~~~~ 294 (434)
T 4b4t_Q 220 LMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIML-NLID-DV---KNILNAKYTKETYQSR 294 (434)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH-TCHH-HH---HHHHHCSSSSTTCCCH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhc-cchh-HH---HhHHHHHHHHHHhcch
Confidence 99999999999999999999999975431 22334444455444444332 2211 10 000000 0 0011
Q ss_pred cchhHHHHHHHhcCCChHHHHHHHHHhHHhhhcccc
Q 022902 252 FSQPYMELVNTYNTGKIVELETYVQTNREKFESVSY 287 (290)
Q Consensus 252 ~~~pY~~la~af~~~~~~~l~~~~~~~~~~f~~D~N 287 (290)
...+|.+++.+|..++...+....+.+...+..|..
T Consensus 295 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 330 (434)
T 4b4t_Q 295 GIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDEL 330 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHH
T ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHH
Confidence 235788899999999999999999999988887754
No 7
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.24 E-value=0.0027 Score=47.93 Aligned_cols=96 Identities=10% Similarity=-0.059 Sum_probs=73.9
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..++...++..+..++... |+.......+-.+...+...+.|+.|...+++-+-..+........+|.-|.++..+++|
T Consensus 14 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~ 92 (129)
T 2xev_A 14 KNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKN 92 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH
T ss_pred HhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCH
Confidence 4466666888888887654 433323356778889999999999999999887654443444467788899999999999
Q ss_pred HHHHHHHHHhhc-cCccc
Q 022902 194 RKALELLHNVVT-APMSS 210 (290)
Q Consensus 194 ~~A~~~l~~ais-~P~~~ 210 (290)
++|..+|+.++. .|...
T Consensus 93 ~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 93 TEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHHHHHHHHCCCCh
Confidence 999999999997 78653
No 8
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.97 E-value=0.071 Score=44.55 Aligned_cols=156 Identities=8% Similarity=-0.017 Sum_probs=98.8
Q ss_pred HhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHh
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK 191 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k 191 (290)
....+....++..+..++.. +|.. ...+..+...+...+.++.|+..+++-+- .+...+....++.-|.++..++
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALAS-DSRN---ARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMK 155 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHH-CcCc---HHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcC
Confidence 34456777788888888765 4432 45678888999999999999999988664 2123345667778899999999
Q ss_pred cHHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhh---hcchhHHHHHHHh-cCC
Q 022902 192 RFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---NFSQPYMELVNTY-NTG 266 (290)
Q Consensus 192 ~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k---~~~~pY~~la~af-~~~ 266 (290)
+|++|..+|+.++. .|... +++..+..+ +...|+.. . .-....+.++ .....|..++..+ ..|
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~------~~~~~la~~-~~~~g~~~-~----A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 223 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLNRNQP------SVALEMADL-LYKEREYV-P----ARQYYDLFAQGGGQNARSLLLGIRLAKVFE 223 (252)
T ss_dssp CHHHHHHHHHHHHHHCSCCH------HHHHHHHHH-HHHTTCHH-H----HHHHHHHHHTTSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhcCcccH------HHHHHHHHH-HHHcCCHH-H----HHHHHHHHHHhCcCcHHHHHHHHHHHHHcc
Confidence 99999999999997 66541 122212111 12234332 1 0111112211 1223466666665 578
Q ss_pred ChHHHHHHHHHhHHhhhc
Q 022902 267 KIVELETYVQTNREKFES 284 (290)
Q Consensus 267 ~~~~l~~~~~~~~~~f~~ 284 (290)
+.++-....++..+.+..
T Consensus 224 ~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 224 DRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp CHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHCCC
Confidence 888877777766555443
No 9
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.0099 Score=56.66 Aligned_cols=168 Identities=11% Similarity=-0.029 Sum_probs=111.6
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhccccc--cc-ccCCchhHHHHHHHHHHHHHHHh
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDD--IY-EINLPRDFFLYCYYGGMIFIGQK 191 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~--i~-~i~~~~~~l~Y~yygG~i~~~~k 191 (290)
.|.-..++..+..+ +....++.+.-.+....+|+|+..+.|..+...+++- +. ..+.......|..|+|+++++.+
T Consensus 144 ~Gd~~~A~~~~~~~-~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r 222 (429)
T 4b4t_R 144 IGDKDNAEKTLGKS-LSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVR 222 (429)
T ss_dssp HCCCTTHHHHHHHH-HHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTS
T ss_pred cCCHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 45555677777764 4455666777888999999999999999999998884 22 22224555789999999999999
Q ss_pred cHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHhcCCCCCCC-C-CCCCHHHHHhhhh--cchhHHHHHHHhcCCC
Q 022902 192 RFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTL-P-KYTSSAAQRNLKN--FSQPYMELVNTYNTGK 267 (290)
Q Consensus 192 ~~~~A~~~l~~ais~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~l-P-k~~s~~~~r~~k~--~~~pY~~la~af~~~~ 267 (290)
+|.+|...|.-+...|...-..-..+..+..+|++++..... .+ . -..++.+...+.. ...++.+++.+|-.++
T Consensus 223 ~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~--~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~ 300 (429)
T 4b4t_R 223 NFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERT--DLKSKVIDSPELLSLISTTAALQSISSLTISLYASD 300 (429)
T ss_dssp CHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHH--HHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHH--HHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhcc
Confidence 999999999988887774333333445666777777653221 11 0 1124444444332 3456777888877767
Q ss_pred hHHHHH-HHHHhHHhhhcc
Q 022902 268 IVELET-YVQTNREKFESV 285 (290)
Q Consensus 268 ~~~l~~-~~~~~~~~f~~D 285 (290)
...+-. ..+.+...+..|
T Consensus 301 ~~~~~~~~l~~~~~~l~~d 319 (429)
T 4b4t_R 301 YASYFPYLLETYANVLIPC 319 (429)
T ss_dssp HHHHHHHHHHHHSTTTTTC
T ss_pred HHHHHHHHHHHHHhhhccC
Confidence 666544 444444444444
No 10
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.61 E-value=0.015 Score=47.19 Aligned_cols=128 Identities=7% Similarity=-0.023 Sum_probs=90.7
Q ss_pred hhhhHHHHHHHHHhcCCh--hhhhhhhHhHHHHHHHHHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHH
Q 022902 74 RANTLVPIIARFITSCSA--EQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCL 151 (290)
Q Consensus 74 ~~~~l~~~v~~fl~~f~~--~Qlr~a~~~~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL 151 (290)
+.+++-..+.+|+..... +-++.-|+....+. ..+..+.+.++...++..++.++.. +|.. ...|..+-..+.
T Consensus 7 ~~~~~~~~l~~~~~~~~~l~~al~l~p~~~~~~~-~lg~~~~~~g~~~eA~~~~~~al~~-~P~~---~~~~~~lg~~~~ 81 (151)
T 3gyz_A 7 ENESISTAVIDAINSGATLKDINAIPDDMMDDIY-SYAYDFYNKGRIEEAEVFFRFLCIY-DFYN---VDYIMGLAAIYQ 81 (151)
T ss_dssp --CHHHHHHHHHHHTSCCTGGGCCSCHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHH
Confidence 455666778888875432 22334555433322 3333445567777899999988864 6644 456788889999
Q ss_pred HccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 152 LAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 152 ~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
..+.|+.|+...++-+- +++ +....+|.-|.+|..+++|++|..+|+.++. .|..
T Consensus 82 ~~g~~~~Ai~~~~~al~-l~P--~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFA-LGK--NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HTTCHHHHHHHHHHHHH-HSS--SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHccHHHHHHHHHHHHh-hCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 99999999999998764 332 2345678899999999999999999999998 6654
No 11
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.42 E-value=0.027 Score=44.76 Aligned_cols=92 Identities=3% Similarity=-0.114 Sum_probs=71.3
Q ss_pred hHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHH
Q 022902 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (290)
Q Consensus 111 ~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~ 190 (290)
.+...+....++..++.++.. +|.. ...+..+-..+...+.|+.|+..+++-+- +++ +....+|+-|.+|..+
T Consensus 30 ~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l~p--~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 30 NQYQSGXYEDAHXVFQALCVL-DHYD---SRFFLGLGACRQAMGQYDLAIHSYSYGAV-MDI--XEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HST--TCTHHHHHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHHHHHc-Cccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCC--CCchHHHHHHHHHHHc
Confidence 344456667788888888764 5543 45667888899999999999999988763 221 2345678889999999
Q ss_pred hcHHHHHHHHHHhhc-cCcc
Q 022902 191 KRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 191 k~~~~A~~~l~~ais-~P~~ 209 (290)
++|++|..+|+.++. .|..
T Consensus 103 g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 103 GELAEAESGLFLAQELIANX 122 (148)
T ss_dssp TCHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHCcCC
Confidence 999999999999998 6764
No 12
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.40 E-value=0.025 Score=44.11 Aligned_cols=102 Identities=7% Similarity=-0.091 Sum_probs=74.8
Q ss_pred HhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHh
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK 191 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k 191 (290)
....++...++..++.++.. +|.. ...+..+-..+...+.|+.|+..+++-+- +++ +....+|.-|.+|..++
T Consensus 28 ~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p--~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 28 QYQAGKWDDAQKIFQALCML-DHYD---ARYFLGLGACRQSLGLYEQALQSYSYGAL-MDI--NEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT--TCTHHHHHHHHHHHHTT
T ss_pred HHHHccHHHHHHHHHHHHHh-CCcc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCC--CCcHHHHHHHHHHHHcC
Confidence 34456666788888888764 5543 45677888899999999999999988763 221 23456788999999999
Q ss_pred cHHHHHHHHHHhhc-cCcc-chhHHHHHHHH
Q 022902 192 RFRKALELLHNVVT-APMS-SINAIAVEAYK 220 (290)
Q Consensus 192 ~~~~A~~~l~~ais-~P~~-~~s~i~veAyK 220 (290)
+|++|..+|+.++. .|.. ....+.-++.+
T Consensus 101 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 101 DLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 99999999999997 6754 33444444433
No 13
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.33 E-value=0.02 Score=42.23 Aligned_cols=91 Identities=9% Similarity=0.001 Sum_probs=69.4
Q ss_pred hhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCC----chhHHHHHHHHHHHHH
Q 022902 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL----PRDFFLYCYYGGMIFI 188 (290)
Q Consensus 113 ~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~----~~~~l~Y~yygG~i~~ 188 (290)
...+....++..+..++.. +|.. ...+..+...+...+.|+.|...+++-+-..+. .......++.-|.++.
T Consensus 15 ~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 90 (131)
T 1elr_A 15 YKKKDFDTALKHYDKAKEL-DPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc-CCcc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Confidence 3446666788888888875 4432 466788889999999999999998886532221 1122667888999999
Q ss_pred HHhcHHHHHHHHHHhhcc-C
Q 022902 189 GQKRFRKALELLHNVVTA-P 207 (290)
Q Consensus 189 ~~k~~~~A~~~l~~ais~-P 207 (290)
.+++|++|..+|+.++.. |
T Consensus 91 ~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 91 KEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHCC
T ss_pred HhccHHHHHHHHHHHHHhCC
Confidence 999999999999999984 5
No 14
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.32 E-value=0.029 Score=44.58 Aligned_cols=91 Identities=5% Similarity=-0.043 Sum_probs=72.5
Q ss_pred hhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhc
Q 022902 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (290)
Q Consensus 113 ~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~ 192 (290)
...+....++..++.|+.. +|.. ...+..+...++..+.|+.|+..+++-+- ++ .+....+|.-|.+|..+++
T Consensus 22 ~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~--p~~~~~~~~lg~~~~~~g~ 94 (164)
T 3sz7_A 22 MARKEYSKAIDLYTQALSI-APAN---PIYLSNRAAAYSASGQHEKAAEDAELATV-VD--PKYSKAWSRLGLARFDMAD 94 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHh-CCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHH-hC--CCCHHHHHHHHHHHHHccC
Confidence 3446666688888888764 5533 56788899999999999999999988763 22 1346778889999999999
Q ss_pred HHHHHHHHHHhhc-cCccc
Q 022902 193 FRKALELLHNVVT-APMSS 210 (290)
Q Consensus 193 ~~~A~~~l~~ais-~P~~~ 210 (290)
|++|..+|+.++. .|...
T Consensus 95 ~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 95 YKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHhCCCch
Confidence 9999999999998 78753
No 15
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.30 E-value=0.02 Score=44.26 Aligned_cols=94 Identities=9% Similarity=0.064 Sum_probs=74.1
Q ss_pred HHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHH
Q 022902 109 KDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFI 188 (290)
Q Consensus 109 ~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~ 188 (290)
+......++...++.....|+. ++|.. ...|..+-..+...+.|+.|+..+++-|- +++ +....++.-|.+|.
T Consensus 20 G~~~~~~g~~~~A~~~~~~al~-~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p--~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 20 GNEYFKKGDYPTAMRHYNEAVK-RDPEN---AILYSNRAACLTKLMEFQRALDDCDTCIR-LDS--KFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-hCCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHH-hhh--hhhHHHHHHHHHHH
Confidence 3334455666678888888876 46544 56778888999999999999999988763 332 34567888999999
Q ss_pred HHhcHHHHHHHHHHhhc-cCcc
Q 022902 189 GQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 189 ~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.+++|++|.++|+.++. -|..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC
T ss_pred HCCCHHHHHHHHHHHHHHCcCC
Confidence 99999999999999998 7875
No 16
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.035 Score=41.81 Aligned_cols=87 Identities=13% Similarity=0.041 Sum_probs=69.4
Q ss_pred hhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhc
Q 022902 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (290)
Q Consensus 113 ~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~ 192 (290)
...+....++..+..|+.. +|.. ...+..+...+...+.|+.|+..+++-+- +++ +....++.-|.++..+++
T Consensus 15 ~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p--~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 15 FTKSDWPNAVKAYTEMIKR-APED---ARGYSNRAAALAKLMSFPEAIADCNKAIE-KDP--NFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT--TCHHHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCC--CcHHHHHHHHHHHHHHhC
Confidence 3446666788888888764 5543 56788889999999999999999988763 221 235678889999999999
Q ss_pred HHHHHHHHHHhhc-c
Q 022902 193 FRKALELLHNVVT-A 206 (290)
Q Consensus 193 ~~~A~~~l~~ais-~ 206 (290)
|++|..+|+.++. .
T Consensus 88 ~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 88 YASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 9999999999997 6
No 17
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.19 E-value=0.053 Score=49.11 Aligned_cols=165 Identities=10% Similarity=0.038 Sum_probs=98.5
Q ss_pred hhccccccHHHHHHHHHhhCCCC--CCchhhHHHHHHHHHHccCchhhhhcccccccccCC----chhHHHHHHHHHHHH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSST--EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL----PRDFFLYCYYGGMIF 187 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~--~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~----~~~~l~Y~yygG~i~ 187 (290)
..+....++..++.|+......+ ......+..+-..+...+.|+.|+..+.+.+--.+. ......-++.-|.+|
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 45666778888888887654322 234567788888888889999888888775432221 334566677888899
Q ss_pred HHHhcHHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhh---------hcchhHH
Q 022902 188 IGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---------NFSQPYM 257 (290)
Q Consensus 188 ~~~k~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k---------~~~~pY~ 257 (290)
..+++|++|.++|+.++. .|...-......+|--+-.+. ...|+.. .- -....+.++ .....|.
T Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-~~~g~~~-~A----~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK-NSQSQYE-DA----IPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHH-HH----HHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHCCCHH-HH----HHHHHHHHHHHHhhccchhHHHHHH
Confidence 999999999999999886 454332223333333322222 2234433 10 111111111 1233477
Q ss_pred HHHHHh-cCCChHHHHHHHHHhHHhhhc
Q 022902 258 ELVNTY-NTGKIVELETYVQTNREKFES 284 (290)
Q Consensus 258 ~la~af-~~~~~~~l~~~~~~~~~~f~~ 284 (290)
.++.++ ..|+.++-....++.-+...+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 777775 567777777666665555544
No 18
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.16 E-value=0.042 Score=45.01 Aligned_cols=93 Identities=11% Similarity=-0.008 Sum_probs=70.6
Q ss_pred hhccccccHHHHHHHHHhhCCCCC-Cc-----------hhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTE-HL-----------TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCY 181 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~-~L-----------Ts~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~y 181 (290)
..+....++..+..|+...+..+. .. ..++..+...++..+.|+.|+..+++-+-. + .+....+|
T Consensus 50 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~--p~~~~~~~ 126 (198)
T 2fbn_A 50 KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-D--KNNVKALY 126 (198)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S--TTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C--cccHHHHH
Confidence 445566678888888775433221 11 257788889999999999999999886632 2 23456788
Q ss_pred HHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 182 YGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 182 ygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.-|.+|..+++|++|..+|+.++. .|..
T Consensus 127 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 127 KLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999997 6764
No 19
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.14 E-value=0.019 Score=44.04 Aligned_cols=88 Identities=8% Similarity=-0.060 Sum_probs=68.6
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..++...++..++.|+.. +|.. ...|..+-..+...+.++.|+..+++-+- +++ +....++.-|.++..+++|
T Consensus 29 ~~g~~~~A~~~~~~al~~-~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~P--~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 29 KLANLAEAALAFEAVCQK-EPER---EEAWRSLGLTQAENEKDGLAIIALNHARM-LDP--KDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HTTCHHHHHHHHHHHHHH-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT--TCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC--CCHHHHHHHHHHHHHcCCH
Confidence 446667788889888875 5543 56778889999999999999999988653 332 2356778999999999999
Q ss_pred HHHHHHHHHhhc-cCc
Q 022902 194 RKALELLHNVVT-APM 208 (290)
Q Consensus 194 ~~A~~~l~~ais-~P~ 208 (290)
++|..+|+.++. .|.
T Consensus 102 ~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 102 NAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhCcC
Confidence 999999999997 564
No 20
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.09 E-value=0.21 Score=43.27 Aligned_cols=98 Identities=4% Similarity=-0.057 Sum_probs=75.4
Q ss_pred HHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHH
Q 022902 109 KDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFI 188 (290)
Q Consensus 109 ~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~ 188 (290)
+......++...++..+..++...+.++......+..+...+...+.|+.|+..+++-+-.-+ +....++.-|.++.
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP---DNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHH
Confidence 334556677778899999988765443333345567788999999999999999988654222 23567788899999
Q ss_pred HHhcHHHHHHHHHHhhc-cCcc
Q 022902 189 GQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 189 ~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.+++|++|.++|+.++. .|..
T Consensus 318 ~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTC
T ss_pred HcCCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999998 6875
No 21
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.04 E-value=0.071 Score=40.37 Aligned_cols=98 Identities=6% Similarity=-0.042 Sum_probs=72.7
Q ss_pred HHHhHhhhccccccHHHHHHHHHhhCCCC--CCchhhHHHHHHHHHHccCchhhhhccccccccc---CCchhHHHHHHH
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKIQSST--EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYY 182 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~--~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i---~~~~~~l~Y~yy 182 (290)
++......+....++..+..++......+ ......+..+...+...+.|+.|...+++-+-.. .........++.
T Consensus 55 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 134 (164)
T 3ro3_A 55 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 134 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHH
Confidence 33344455677778888888887664322 2335567788889999999999999998865322 223455677788
Q ss_pred HHHHHHHHhcHHHHHHHHHHhhc
Q 022902 183 GGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 183 gG~i~~~~k~~~~A~~~l~~ais 205 (290)
-|.++..+++|++|.++++.++.
T Consensus 135 la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 135 LGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 89999999999999999999985
No 22
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.01 E-value=0.12 Score=44.03 Aligned_cols=163 Identities=10% Similarity=0.009 Sum_probs=101.3
Q ss_pred ccccHHHHHHHHHhhCC--CCCCchhhHHHHHHHHHHccCchhhhhccccccccc---CCchhHHHHHHHHHHHHHHHhc
Q 022902 118 PIRGVGPMLTAIRKIQS--STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFIGQKR 192 (290)
Q Consensus 118 p~~~i~~L~~Ai~r~~~--~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i---~~~~~~l~Y~yygG~i~~~~k~ 192 (290)
...++..+..++..... ........+..+...+...+.++.|...+++-+-.. +........++.-|.++..+++
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 34456666666544321 123345577888899999999999999998865322 2244456678889999999999
Q ss_pred HHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhh---h------cchhHHHHHHH
Q 022902 193 FRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---N------FSQPYMELVNT 262 (290)
Q Consensus 193 ~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k---~------~~~pY~~la~a 262 (290)
|++|..+|+.++. .|...-.....+++-.+..+. ...|+.. .- -....+.++ . ....|..++.+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~-~A----~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 312 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY-TLLQDYE-KA----IDYHLKHLAIAQELKDRIGEGRACWSLGNA 312 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHH-HH----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH-HHhcCHH-HH----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 9999999999997 555444444455554444333 3446544 21 111122111 1 13366778888
Q ss_pred h-cCCChHHHHHHHHHhHHhhhccc
Q 022902 263 Y-NTGKIVELETYVQTNREKFESVS 286 (290)
Q Consensus 263 f-~~~~~~~l~~~~~~~~~~f~~D~ 286 (290)
+ ..|+.++-....++..+.+.+-|
T Consensus 313 ~~~~g~~~~A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 313 YTALGNHDQAMHFAEKHLEISREVG 337 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHC-----
T ss_pred HHHcCChHHHHHHHHHHHHHHHhhc
Confidence 6 56888888888888777766544
No 23
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.00 E-value=0.011 Score=44.50 Aligned_cols=90 Identities=13% Similarity=0.125 Sum_probs=67.8
Q ss_pred ccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHH
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRK 195 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~ 195 (290)
+....++..++.|+..- ++...-...+..+-..+...+.|+.|+..+++-+-.-| +....++.-|+++..+++|++
T Consensus 4 g~~~~A~~~~~~al~~~-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASG-LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP---NHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ---CCCHHHHHHHHSSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHH
T ss_pred CcHHHHHHHHHHHHHcC-CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHcCCHHH
Confidence 45566888888888642 11112356788899999999999999999998764322 235677788999999999999
Q ss_pred HHHHHHHhhc-cCcc
Q 022902 196 ALELLHNVVT-APMS 209 (290)
Q Consensus 196 A~~~l~~ais-~P~~ 209 (290)
|..+|+.++. .|..
T Consensus 80 A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 80 GVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhCCCc
Confidence 9999999997 5764
No 24
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.00 E-value=0.019 Score=49.15 Aligned_cols=95 Identities=16% Similarity=0.030 Sum_probs=77.0
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHH----
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG---- 189 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~---- 189 (290)
..++...++..+..++... |........+-.+-..+...+.|+.|+..+++-+-..|.....-.-+|..|.++..
T Consensus 27 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~ 105 (261)
T 3qky_A 27 NQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPP 105 (261)
T ss_dssp HTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCC
T ss_pred HhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccc
Confidence 3466667888888887764 44444467888899999999999999999999876555455666778899999999
Q ss_pred ----HhcHHHHHHHHHHhhc-cCcc
Q 022902 190 ----QKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 190 ----~k~~~~A~~~l~~ais-~P~~ 209 (290)
+++|++|..+|+.++. .|.+
T Consensus 106 ~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 106 YELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred ccccchhHHHHHHHHHHHHHHCcCc
Confidence 9999999999999997 7875
No 25
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.00 E-value=0.082 Score=38.67 Aligned_cols=89 Identities=11% Similarity=-0.009 Sum_probs=68.6
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..+....++..+..++.. +|.. ...+..+...+...+.|+.|+..+++-+-.-+ +....++..|.++..+++|
T Consensus 24 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 96 (131)
T 2vyi_A 24 KVENFEAAVHFYGKAIEL-NPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICIDP---AYSKAYGRMGLALSSLNKH 96 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred HccCHHHHHHHHHHHHHc-CCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc---cCHHHHHHHHHHHHHhCCH
Confidence 445566678888888765 4432 45677888899999999999999988663222 2245678889999999999
Q ss_pred HHHHHHHHHhhc-cCcc
Q 022902 194 RKALELLHNVVT-APMS 209 (290)
Q Consensus 194 ~~A~~~l~~ais-~P~~ 209 (290)
++|..+|+.++. .|..
T Consensus 97 ~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 97 VEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCccc
Confidence 999999999998 6764
No 26
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.99 E-value=0.021 Score=44.07 Aligned_cols=96 Identities=11% Similarity=0.040 Sum_probs=72.3
Q ss_pred HHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCC-----chhHHHHHHH
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-----PRDFFLYCYY 182 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~-----~~~~l~Y~yy 182 (290)
++......++-..++.....|+. ++|+. ...|..+-..++..+.|+.|+...++-|- +++ ......-++.
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~-~~p~~---~~~~~nlg~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIE-LDPSN---ITFYNNKAAVYFEEKKFAECVQFCEKAVE-VGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-hCCCC---HHHHHhHHHHHHHhhhHHHHHHHHHHHHH-hCcccchhhHHHHHHHHH
Confidence 34444455666678888888876 56644 55778889999999999999999888663 221 2233455677
Q ss_pred HHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 183 GGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 183 gG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
-|.++..+++|++|.++|+.++. .|.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 89999999999999999999998 454
No 27
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.96 E-value=0.069 Score=38.39 Aligned_cols=89 Identities=9% Similarity=-0.095 Sum_probs=68.9
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..++...++..+..++.. +|.. ...+..+...+...+.|+.|...+++-+-.-+ +....++.-|.++..+++|
T Consensus 16 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~ 88 (118)
T 1elw_A 16 SVGNIDDALQCYSEAIKL-DPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP---DWGKGYSRKAAALEFLNRF 88 (118)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred HcccHHHHHHHHHHHHHH-CCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHHhhH
Confidence 446666788888888765 4433 45677888899999999999999988653222 2355677889999999999
Q ss_pred HHHHHHHHHhhc-cCcc
Q 022902 194 RKALELLHNVVT-APMS 209 (290)
Q Consensus 194 ~~A~~~l~~ais-~P~~ 209 (290)
++|..+|+.++. .|..
T Consensus 89 ~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 89 EEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 999999999998 6764
No 28
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.95 E-value=0.12 Score=46.88 Aligned_cols=168 Identities=10% Similarity=0.010 Sum_probs=100.2
Q ss_pred hhccccccHHHHHHHHHhhCCCC--CCchhhHHHHHHHHHHccCchhhhhcccccccccCC----chhHHHHHHHHHHHH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSST--EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL----PRDFFLYCYYGGMIF 187 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~--~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~----~~~~l~Y~yygG~i~ 187 (290)
..+....++..++.|+......+ ......+..+-..+...+.|+.|+....+-+--.+. ......-++.-|.+|
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 44566668888888877654322 234567777888888888988888888775432221 224566677788889
Q ss_pred HHHhcHHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhh--------hcchhHHH
Q 022902 188 IGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK--------NFSQPYME 258 (290)
Q Consensus 188 ~~~k~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k--------~~~~pY~~ 258 (290)
..+++|++|.++|+.++. ++...-......++--+-.+. ...|+.. .- -....+.++ .....|..
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-~~~~~~~-~A----~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSY-DRSGDDQ-MA----VEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHH-HH----HHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHCCCHH-HH----HHHHHHHHHHHHhhCChhHHHHHHH
Confidence 999999999999998886 333222222333333332222 2234433 11 111112211 12345667
Q ss_pred HHHHh-cCCChHHHHHHHHHhHHhhhcccc
Q 022902 259 LVNTY-NTGKIVELETYVQTNREKFESVSY 287 (290)
Q Consensus 259 la~af-~~~~~~~l~~~~~~~~~~f~~D~N 287 (290)
++.++ ..|+.++-....++.-+...+.++
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 296 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSH 296 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 77775 568888777777777666655443
No 29
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.89 E-value=0.087 Score=42.30 Aligned_cols=127 Identities=7% Similarity=-0.118 Sum_probs=85.8
Q ss_pred hhhhHHHHHHHHHhcCChhhhhhhhHhHHHHHHHHHHhHhhhccccccHHHHHHHHHhhCCCC-C--CchhhHHHHHHHH
Q 022902 74 RANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSST-E--HLTTLHPEFLQLC 150 (290)
Q Consensus 74 ~~~~l~~~v~~fl~~f~~~Qlr~a~~~~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~-~--~LTs~H~~ll~lc 150 (290)
++...+..+.......+.. .........++......+....++..+..|+......+ . .....+..+...+
T Consensus 44 ~A~~~~~~al~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 117 (203)
T 3gw4_A 44 EARASFQALQQQAQKSGDH------TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVA 117 (203)
T ss_dssp HHHHHHHHHHHHHHTTCCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 4556666666665543211 11111222333444455677778889998888764333 2 4566788889999
Q ss_pred HHccCchhhhhccccccccc---CCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcc
Q 022902 151 LLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA 206 (290)
Q Consensus 151 L~ak~y~~Al~vl~~~i~~i---~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~ 206 (290)
...+.|+.|...+++-+-.. ........-++.-|.++..+++|++|.++|+.++..
T Consensus 118 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 118 LHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999998865322 123334455678899999999999999999999973
No 30
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=95.85 E-value=0.71 Score=39.10 Aligned_cols=98 Identities=9% Similarity=-0.036 Sum_probs=74.5
Q ss_pred HHHhHhhhccccccHHHHHHHHHhhC----CCCCCchhhHHHHHHHHHHccCchhhhhccccccccc-----CCchhHHH
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKIQ----SSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI-----NLPRDFFL 178 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~~----~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i-----~~~~~~l~ 178 (290)
++......++...++..+..++.... +........+..+...+...+.++.|+..+++-+-.. +.......
T Consensus 117 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 196 (311)
T 3nf1_A 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAK 196 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 33444455777778888888887651 2233355677888999999999999999998865321 11445677
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 179 YCYYGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 179 Y~yygG~i~~~~k~~~~A~~~l~~ais 205 (290)
.++.-|.+|..+++|++|..+|+.++.
T Consensus 197 ~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 197 TKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788889999999999999999999996
No 31
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.82 E-value=0.043 Score=41.64 Aligned_cols=92 Identities=13% Similarity=0.045 Sum_probs=70.4
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..+....++..+..++.. +|+.......+..+...+...+.|+.|+..+++-+-.-+ +....++.-|.++..+++|
T Consensus 40 ~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~ 115 (148)
T 2dba_A 40 KCGDYGGALAAYTQALGL-DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG---GDVKALYRRSQALEKLGRL 115 (148)
T ss_dssp TTTCHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS---CCHHHHHHHHHHHHHHTCH
T ss_pred HhCCHHHHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc---cCHHHHHHHHHHHHHcCCH
Confidence 445666678888887753 454323456778888899999999999999988653222 2366778899999999999
Q ss_pred HHHHHHHHHhhc-cCcc
Q 022902 194 RKALELLHNVVT-APMS 209 (290)
Q Consensus 194 ~~A~~~l~~ais-~P~~ 209 (290)
++|..+|+.++. .|..
T Consensus 116 ~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 116 DQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 999999999998 6764
No 32
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.77 E-value=0.02 Score=45.42 Aligned_cols=68 Identities=12% Similarity=-0.042 Sum_probs=57.1
Q ss_pred chhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 139 LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 139 LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
...+|..+...++..+.|+.|+...++-+- +++ +....+|..|.+|..+++|++|..+|+.++. .|.+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~-~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLK-REE--TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cCC--cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 356788899999999999999999888763 332 3456788899999999999999999999998 7875
No 33
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.70 E-value=0.056 Score=40.79 Aligned_cols=88 Identities=9% Similarity=0.018 Sum_probs=69.6
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..+....++..+..++.. +|.. ...+..+...+...+.|+.|+..+++-+- ++ .+....++.-|.++..+++|
T Consensus 21 ~~~~~~~A~~~~~~al~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~--p~~~~~~~~l~~~~~~~~~~ 93 (137)
T 3q49_B 21 VGRKYPEAAACYGRAITR-NPLV---AVYYTNRALCYLKMQQPEQALADCRRALE-LD--GQSVKAHFFLGQCQLEMESY 93 (137)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HhCcHHHHHHHHHHHHhh-CcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hC--chhHHHHHHHHHHHHHHhhH
Confidence 445666688888888765 4433 56788899999999999999999888653 22 23456788899999999999
Q ss_pred HHHHHHHHHhhc-cCc
Q 022902 194 RKALELLHNVVT-APM 208 (290)
Q Consensus 194 ~~A~~~l~~ais-~P~ 208 (290)
++|..+|+.++. .|.
T Consensus 94 ~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 94 DEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHChh
Confidence 999999999997 665
No 34
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=95.62 E-value=0.056 Score=40.03 Aligned_cols=90 Identities=11% Similarity=0.055 Sum_probs=69.8
Q ss_pred hhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhc
Q 022902 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (290)
Q Consensus 113 ~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~ 192 (290)
...+....++..+..++.. +|.. ...+..+...+...+.++.|+..+++-+-.-+ +....++.-|.++..+++
T Consensus 27 ~~~~~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~~ 99 (133)
T 2lni_A 27 FQKGDYPQAMKHYTEAIKR-NPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEP---TFIKGYTRKAAALEAMKD 99 (133)
T ss_dssp HHTTCSHHHHHHHHHHHTT-CTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHc-CCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHHhh
Confidence 3456677788888888764 4432 55677888888999999999999988663222 245677888999999999
Q ss_pred HHHHHHHHHHhhc-cCcc
Q 022902 193 FRKALELLHNVVT-APMS 209 (290)
Q Consensus 193 ~~~A~~~l~~ais-~P~~ 209 (290)
|++|..+|+.++. .|..
T Consensus 100 ~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 100 YTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 9999999999997 6764
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.60 E-value=0.15 Score=43.02 Aligned_cols=88 Identities=9% Similarity=-0.041 Sum_probs=45.4
Q ss_pred ccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCC-chhHHHHHHHHHHHHHHHhcHH
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-PRDFFLYCYYGGMIFIGQKRFR 194 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~-~~~~l~Y~yygG~i~~~~k~~~ 194 (290)
++...++..++.++.. +|.. ...+..+...+...+.|+.|+..+++-+- .+. +.....-++.-|.++..+++|+
T Consensus 17 ~~~~~A~~~~~~~l~~-~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 17 NNYAEAIEVFNKLEAK-KYNS---PYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp TCHHHHHHHHHHHHHT-TCCC---STTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred cCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHH
Confidence 4444455555555543 3322 12344555566666666666666655443 221 1112334555666666666666
Q ss_pred HHHHHHHHhhc-cCc
Q 022902 195 KALELLHNVVT-APM 208 (290)
Q Consensus 195 ~A~~~l~~ais-~P~ 208 (290)
+|..+|+.++. .|.
T Consensus 92 ~A~~~~~~a~~~~~~ 106 (272)
T 3u4t_A 92 LAIQQYQAAVDRDTT 106 (272)
T ss_dssp HHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcCcc
Confidence 66666666665 444
No 36
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.60 E-value=0.041 Score=40.85 Aligned_cols=82 Identities=11% Similarity=-0.002 Sum_probs=63.5
Q ss_pred cHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHH
Q 022902 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELL 200 (290)
Q Consensus 121 ~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l 200 (290)
++..++.++. .+|.. ...+..+...+...+.|+.|+..+++-+-.-+ +....++.-|.+|..+++|++|..+|
T Consensus 4 a~~~~~~al~-~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 4 ITERLEAMLA-QGTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP---TYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp HHHHHHHHHT-TTCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4556666665 34433 46778889999999999999999988763222 33556788899999999999999999
Q ss_pred HHhhc-cCcc
Q 022902 201 HNVVT-APMS 209 (290)
Q Consensus 201 ~~ais-~P~~ 209 (290)
+.++. .|..
T Consensus 77 ~~al~~~~~~ 86 (115)
T 2kat_A 77 ESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhcccc
Confidence 99997 6653
No 37
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.57 E-value=0.12 Score=37.45 Aligned_cols=90 Identities=9% Similarity=0.039 Sum_probs=68.0
Q ss_pred hhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhc
Q 022902 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (290)
Q Consensus 113 ~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~ 192 (290)
...+....++..+..++.. +|.. ...+..+...+...+.|+.|+..+++-+-.-+ +....++.-|.++..+++
T Consensus 20 ~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~ 92 (125)
T 1na0_A 20 YKQGDYDEAIEYYQKALEL-DPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQGD 92 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHH-CcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhcC
Confidence 3445666678888888765 3432 45667888999999999999999888653212 224556788999999999
Q ss_pred HHHHHHHHHHhhc-cCcc
Q 022902 193 FRKALELLHNVVT-APMS 209 (290)
Q Consensus 193 ~~~A~~~l~~ais-~P~~ 209 (290)
|++|..+|+.++. .|..
T Consensus 93 ~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 93 YDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 9999999999997 6764
No 38
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.57 E-value=0.095 Score=46.40 Aligned_cols=159 Identities=12% Similarity=0.055 Sum_probs=98.6
Q ss_pred HhHhhhccccccHHHHHHHHHhhCCCCC--CchhhHHHHHHHHHHccCchhhhhcccccccccC---CchhHHHHHHHHH
Q 022902 110 DQVLLLEAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---LPRDFFLYCYYGG 184 (290)
Q Consensus 110 ~~~~~~~~p~~~i~~L~~Ai~r~~~~~~--~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~---~~~~~l~Y~yygG 184 (290)
......+.+..++..++.|+.-+...+. .....+..+-..+.. +.|+.|+..+++-+--.+ ........++-.|
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 3344557788899999999987654332 223455666666666 999999999888653221 1223456677889
Q ss_pred HHHHHHhcHHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHHHhcCCCCCC----------CCCCCCHHHHHhhhhcc
Q 022902 185 MIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSST----------LPKYTSSAAQRNLKNFS 253 (290)
Q Consensus 185 ~i~~~~k~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~----------lPk~~s~~~~r~~k~~~ 253 (290)
.+|..+++|++|..+|+.++. .|..........++-...++.+ ..|+.. . -|.+.... .+
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~-~A~~~~~~al~~p~~~~~~-------e~ 233 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL-HRADYV-AAQKCVRESYSIPGFSGSE-------DC 233 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHH-HHHHHHHHHTTSTTSTTSH-------HH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH-HcCCHH-HHHHHHHHHhCCCCCCCCH-------HH
Confidence 999999999999999999997 5544323333334444444332 224422 1 11111110 12
Q ss_pred hhHHHHHHHhcCCChHHHHHHHHHhH
Q 022902 254 QPYMELVNTYNTGKIVELETYVQTNR 279 (290)
Q Consensus 254 ~pY~~la~af~~~~~~~l~~~~~~~~ 279 (290)
.-...++.++..||.++++. +.++.
T Consensus 234 ~~l~~l~~~~~~~d~~~~~~-~~~~~ 258 (307)
T 2ifu_A 234 AALEDLLQAYDEQDEEQLLR-VCRSP 258 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHH-HTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHH-HHhCc
Confidence 23556788888999888888 44443
No 39
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.022 Score=53.74 Aligned_cols=135 Identities=12% Similarity=0.095 Sum_probs=92.3
Q ss_pred HHHHHHHHHccCchhhhhccccccccc---C--CchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-c-CccchhHHHH
Q 022902 144 PEFLQLCLLAKCYKAGLSVLEDDIYEI---N--LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-A-PMSSINAIAV 216 (290)
Q Consensus 144 ~~ll~lcL~ak~y~~Al~vl~~~i~~i---~--~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~-P~~~~s~i~v 216 (290)
....+.++..+..+.|..++++.--.+ + .+.-...||+.+|..|...++|.++....-..+. . +....+.-..
T Consensus 131 ~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~ 210 (393)
T 4b4t_O 131 SEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAER 210 (393)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHH
Confidence 456788888899999999888753212 1 2567899999999999999999999888777775 2 3445565555
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCC-CHHHHHhhhh--cchhHHHHHHHhcCCChHHHHHHHHHhHH
Q 022902 217 EAYKKYILVSLIHHGQFSSTLPKYT-SSAAQRNLKN--FSQPYMELVNTYNTGKIVELETYVQTNRE 280 (290)
Q Consensus 217 eAyKK~iLv~Ll~~G~~~~~lPk~~-s~~~~r~~k~--~~~pY~~la~af~~~~~~~l~~~~~~~~~ 280 (290)
...+-.++++-|+...++ .+-... .|.+ +.+++ .-.+|.++..+|..||+.++.+..+.+.+
T Consensus 211 ~~~a~~l~~~all~~~i~-~f~eLL~~p~i-~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~ 275 (393)
T 4b4t_O 211 QQLAYDLSISALLGDKIY-NFGELLHHPIM-ETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQIS 275 (393)
T ss_dssp HHHHHHHHHHHHHCCSSC-STHHHHHSCCT-TSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHcCCCCC-ChHHHhCChHH-HHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhh
Confidence 666667777777754444 331100 1111 11221 23579999999999999999887665544
No 40
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.51 E-value=0.11 Score=44.45 Aligned_cols=113 Identities=11% Similarity=-0.044 Sum_probs=80.4
Q ss_pred HhhhccccccHHHHHHHHHhhCCC-CCCchhhHHHHHHHHHHccCchhhhhccccccccc---CCchhHHHHHHHHHHHH
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSS-TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIF 187 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~-~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i---~~~~~~l~Y~yygG~i~ 187 (290)
....+....++..++.++.. +|. +.....++..+...+...+.|+.|+..+++-+-.. +........++.-|.+|
T Consensus 15 ~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 93 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQV-GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 34556677788999998886 443 23335678889999999999999999988754321 22445577788899999
Q ss_pred HHHhcHHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHH
Q 022902 188 IGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILV 225 (290)
Q Consensus 188 ~~~k~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv 225 (290)
..+++|++|.++|+.++. .|...-......++.....+
T Consensus 94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 132 (338)
T 3ro2_A 94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 132 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 999999999999999997 55543333344444444333
No 41
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.46 E-value=0.5 Score=42.38 Aligned_cols=162 Identities=11% Similarity=-0.011 Sum_probs=103.8
Q ss_pred ccccHHHHHHHHHhhC--CCCCCchhhHHHHHHHHHHccCchhhhhcccccccccC---CchhHHHHHHHHHHHHHHHhc
Q 022902 118 PIRGVGPMLTAIRKIQ--SSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---LPRDFFLYCYYGGMIFIGQKR 192 (290)
Q Consensus 118 p~~~i~~L~~Ai~r~~--~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~---~~~~~l~Y~yygG~i~~~~k~ 192 (290)
...++..+..++.... .........+..+...+...+.|+.|+..+++-+-..+ ........++.-|.+|..+++
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 4446666666665432 12233456778889999999999999999988653222 233445677888999999999
Q ss_pred HHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhhh---------cchhHHHHHHH
Q 022902 193 FRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN---------FSQPYMELVNT 262 (290)
Q Consensus 193 ~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k~---------~~~pY~~la~a 262 (290)
|++|..+|+.++. .|...-.....+++..+..+. ...|+.. .- -....+.++. ....|..++.+
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~-~A----~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 352 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY-TLLHEFN-TA----IEYHNRHLAIAQELGDRIGEARACWSLGNA 352 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHH-HH----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHcCCHH-HH----HHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 9999999999997 565444444455554444443 3446544 21 1112222111 13367788888
Q ss_pred h-cCCChHHHHHHHHHhHHhhhcc
Q 022902 263 Y-NTGKIVELETYVQTNREKFESV 285 (290)
Q Consensus 263 f-~~~~~~~l~~~~~~~~~~f~~D 285 (290)
+ ..|+.++-....++..+.+.+-
T Consensus 353 ~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 353 HSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHhccHHHHHHHHHHHHHHHhhc
Confidence 6 5788888777777766666543
No 42
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=95.45 E-value=0.056 Score=48.16 Aligned_cols=112 Identities=10% Similarity=-0.059 Sum_probs=79.8
Q ss_pred HhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhccccccccc---CCchhHHHHHHHHHHHHH
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFI 188 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i---~~~~~~l~Y~yygG~i~~ 188 (290)
....+....++..+..++..-..++..+..++..+...+...+.|+.|+..+++-+--. .........++.-|.+|.
T Consensus 19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 98 (406)
T 3sf4_A 19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 98 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 34556677788889988876332233345678888999999999999999988754321 224456778888999999
Q ss_pred HHhcHHHHHHHHHHhhc-cCccchhHHHHHHHHHHH
Q 022902 189 GQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYI 223 (290)
Q Consensus 189 ~~k~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~i 223 (290)
.+++|++|..+|+.++. .|...-......++-..-
T Consensus 99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 134 (406)
T 3sf4_A 99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG 134 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 99999999999999997 565433333333443333
No 43
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.40 E-value=0.05 Score=45.26 Aligned_cols=97 Identities=12% Similarity=-0.001 Sum_probs=75.7
Q ss_pred HHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCc----hhHHHHHHHH
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP----RDFFLYCYYG 183 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~----~~~l~Y~yyg 183 (290)
.+......+....++..+..|+. .+|. ....+..+...+...+.|+.|+..+++-+-..|.. ......++..
T Consensus 48 ~~~~~~~~~~~~~A~~~~~~al~-~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 123 (228)
T 4i17_A 48 CGVCADNIKKYKEAADYFDIAIK-KNYN---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKE 123 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-TTCS---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcHHHHHHHHHHHHH-hCcc---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 34444456777778999999885 3543 46678889999999999999999998876433321 2234778999
Q ss_pred HHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 184 GMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 184 G~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
|.++..+++|++|.++|+.++. .|.
T Consensus 124 g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 124 GQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred hHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999998 676
No 44
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.37 E-value=0.066 Score=40.57 Aligned_cols=92 Identities=9% Similarity=0.015 Sum_probs=68.2
Q ss_pred hhccccccHHHHHHHHHhhCC--CCCCchhhHHHHHHHHHHccCchhhhhccccccccc---CCchhHHHHHHHHHHHHH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQS--STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFI 188 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~--~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i---~~~~~~l~Y~yygG~i~~ 188 (290)
..+....++..++.++..... ........+..+...+...+.|+.|...+++-+-.. +........++.-|.++.
T Consensus 21 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (164)
T 3ro3_A 21 LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 100 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 445566677777777766542 223334577888899999999999999998864322 223445677888899999
Q ss_pred HHhcHHHHHHHHHHhhc
Q 022902 189 GQKRFRKALELLHNVVT 205 (290)
Q Consensus 189 ~~k~~~~A~~~l~~ais 205 (290)
.+++|++|.++++.++.
T Consensus 101 ~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 101 LLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999999875
No 45
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.36 E-value=0.81 Score=38.66 Aligned_cols=94 Identities=15% Similarity=0.065 Sum_probs=67.6
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhh--------------HHHHHHHHHHccCchhhhhcccccccccCCchhHHHHH
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTL--------------HPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC 180 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~--------------H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~ 180 (290)
.+....++..++.++...+.++. .... +-.+-+.+...+.|+.|+..+++-+-..|........+
T Consensus 110 ~~~~~~A~~~~~~~l~~~p~~~~-~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~ 188 (261)
T 3qky_A 110 QTDTRKAIEAFQLFIDRYPNHEL-VDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDAL 188 (261)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred chhHHHHHHHHHHHHHHCcCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHH
Confidence 45555678888888776543332 2211 25567788888999999998888665445444567778
Q ss_pred HHHHHHHHHH----------hcHHHHHHHHHHhhc-cCcc
Q 022902 181 YYGGMIFIGQ----------KRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 181 yygG~i~~~~----------k~~~~A~~~l~~ais-~P~~ 209 (290)
|..|.+|..+ ++|++|...|+.++. .|.+
T Consensus 189 ~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 189 VGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 8889999877 899999999999987 7764
No 46
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.29 E-value=0.15 Score=40.55 Aligned_cols=90 Identities=10% Similarity=0.026 Sum_probs=68.3
Q ss_pred hhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHH-HHHccCc--hhhhhcccccccccCCchhHHHHHHHHHHHHHH
Q 022902 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQL-CLLAKCY--KAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG 189 (290)
Q Consensus 113 ~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~l-cL~ak~y--~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~ 189 (290)
...+....++..++.++.. +|.. ...+..+... +...+.| +.|+..+++-+-.-+ +....++..|.+|..
T Consensus 55 ~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~ 127 (177)
T 2e2e_A 55 LWQNDYSNSLLAYRQALQL-RGEN---AELYAALATVLYYQASQHMTAQTRAMIDKALALDS---NEITALMLLASDAFM 127 (177)
T ss_dssp HHTTCHHHHHHHHHHHHHH-HCSC---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHc-CCCC---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHH
Confidence 3456667788888888875 4433 4456667777 7788999 999999888663222 234667888999999
Q ss_pred HhcHHHHHHHHHHhhc-cCcc
Q 022902 190 QKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 190 ~k~~~~A~~~l~~ais-~P~~ 209 (290)
+++|++|..+|+.++. .|..
T Consensus 128 ~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 128 QANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp TTCHHHHHHHHHHHHHTCCTT
T ss_pred cccHHHHHHHHHHHHhhCCCC
Confidence 9999999999999997 6775
No 47
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.3 Score=40.27 Aligned_cols=158 Identities=9% Similarity=0.112 Sum_probs=97.3
Q ss_pred hhhccccccHHHHHHHHHhhCCCCCC---chhhHHHHHHHHHHccCchhhhhcccccccccC------------------
Q 022902 113 LLLEAPIRGVGPMLTAIRKIQSSTEH---LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN------------------ 171 (290)
Q Consensus 113 ~~~~~p~~~i~~L~~Ai~r~~~~~~~---LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~------------------ 171 (290)
...+....++..+..++...+..+.. ....+..+...+...+.++.|+..+++-+-..+
T Consensus 49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKA 128 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHH
Confidence 34455666777788777754322111 256777788888888888888888777543111
Q ss_pred -----CchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHH
Q 022902 172 -----LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAA 245 (290)
Q Consensus 172 -----~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~ 245 (290)
...+....++.-|.++..+++|++|..+|+.++. .|... +++-.+.. .++..|+.. . .-...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~-~~~~~~~~~-~----A~~~~ 196 (258)
T 3uq3_A 129 EAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA------RGYSNRAA-ALAKLMSFP-E----AIADC 196 (258)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHH-HHHHTTCHH-H----HHHHH
T ss_pred HHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH------HHHHHHHH-HHHHhCCHH-H----HHHHH
Confidence 1234566788899999999999999999999997 67642 22222222 223445544 2 11112
Q ss_pred HHhh---hhcchhHHHHHHHh-cCCChHHHHHHHHHhHHhh
Q 022902 246 QRNL---KNFSQPYMELVNTY-NTGKIVELETYVQTNREKF 282 (290)
Q Consensus 246 ~r~~---k~~~~pY~~la~af-~~~~~~~l~~~~~~~~~~f 282 (290)
.+.+ ......|..++.++ ..|+.++-....++.-+..
T Consensus 197 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 2222 12345678888886 5688777666666655444
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.17 E-value=0.08 Score=44.39 Aligned_cols=87 Identities=10% Similarity=0.017 Sum_probs=44.7
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHH----
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ---- 190 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~---- 190 (290)
.++...++..++.|+. .+|.. ...+..+-..+...+.++.|+..+++-+- ++ + +....++.-|.++..+
T Consensus 18 ~g~~~~A~~~~~~al~-~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~-~~-P-~~~~a~~~lg~~~~~~~~~~ 90 (217)
T 2pl2_A 18 LGRYDAALTLFERALK-ENPQD---PEALYWLARTQLKLGLVNPALENGKTLVA-RT-P-RYLGGYMVLSEAYVALYRQA 90 (217)
T ss_dssp TTCHHHHHHHHHHHHT-TSSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-T-TCHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHH-hCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-C-CcHHHHHHHHHHHHHhhhhh
Confidence 3444445555555543 23322 34455555566666666666666555432 11 1 1233444555566666
Q ss_pred -------hcHHHHHHHHHHhhc-cCc
Q 022902 191 -------KRFRKALELLHNVVT-APM 208 (290)
Q Consensus 191 -------k~~~~A~~~l~~ais-~P~ 208 (290)
++|++|...|+.++. .|.
T Consensus 91 ~~~~~~~g~~~~A~~~~~~al~~~P~ 116 (217)
T 2pl2_A 91 EDRERGKGYLEQALSVLKDAERVNPR 116 (217)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhhcccccCHHHHHHHHHHHHHhCcc
Confidence 666666666666665 454
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.16 E-value=0.97 Score=36.17 Aligned_cols=85 Identities=7% Similarity=0.035 Sum_probs=41.2
Q ss_pred ccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHc-cCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHH
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLA-KCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR 194 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~a-k~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~ 194 (290)
+....++..+..++.. +|.. ...+..+...+... +.++.|+..+++-+- .+...+....++.-|.++..+++|+
T Consensus 56 ~~~~~A~~~~~~a~~~-~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 56 KVNDKAQESFRQALSI-KPDS---AEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp TCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred CChHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHH
Confidence 3444455555555443 2221 23344455555555 556666555555443 1112222344455555556666666
Q ss_pred HHHHHHHHhhc
Q 022902 195 KALELLHNVVT 205 (290)
Q Consensus 195 ~A~~~l~~ais 205 (290)
+|..+|+.++.
T Consensus 131 ~A~~~~~~~~~ 141 (225)
T 2vq2_A 131 LAEAYLKRSLA 141 (225)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 50
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=95.13 E-value=0.29 Score=40.75 Aligned_cols=99 Identities=7% Similarity=-0.109 Sum_probs=74.7
Q ss_pred HHHhHhhhccccccHHHHHHHHHhh----CCCCCCchhhHHHHHHHHHHccCchhhhhccccccccc-----CCchhHHH
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKI----QSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI-----NLPRDFFL 178 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~----~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i-----~~~~~~l~ 178 (290)
++......+....++..+..|+... .+........+..+...+...+.|+.|+..+++-+-.. +...+...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3444445577777889988888775 22223345677888899999999999999998865321 11345667
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHhhcc
Q 022902 179 YCYYGGMIFIGQKRFRKALELLHNVVTA 206 (290)
Q Consensus 179 Y~yygG~i~~~~k~~~~A~~~l~~ais~ 206 (290)
.++.-|.+|..+++|++|..+|+.++..
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888899999999999999999999973
No 51
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.12 E-value=0.19 Score=38.67 Aligned_cols=89 Identities=18% Similarity=0.122 Sum_probs=68.4
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..+....++..+..++.. +|.. ...+..+...+...+.|+.|+..+++-+-.-+ +....++.-|.++..+++|
T Consensus 25 ~~~~~~~A~~~~~~al~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 25 KAKDYENAIKFYSQAIEL-NPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDK---KYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred HccCHHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHhccH
Confidence 345666678888888764 4433 45677888899999999999999988653222 2355678889999999999
Q ss_pred HHHHHHHHHhhc-cCcc
Q 022902 194 RKALELLHNVVT-APMS 209 (290)
Q Consensus 194 ~~A~~~l~~ais-~P~~ 209 (290)
++|..+|+.++. .|..
T Consensus 98 ~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 98 RAALRDYETVVKVKPHD 114 (166)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 999999999998 6764
No 52
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.089 Score=37.96 Aligned_cols=82 Identities=11% Similarity=0.050 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCccchhHHHHHHHH
Q 022902 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYK 220 (290)
Q Consensus 142 ~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~~~s~i~veAyK 220 (290)
.+..+-..+...+.|+.|+..+++-+-.-+ +....++.-|.++..+++|++|..+|+.++. .|.........+++-
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQP---QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 345566788889999999999888663222 2356678899999999999999999999998 687644444555555
Q ss_pred HHHHHH
Q 022902 221 KYILVS 226 (290)
Q Consensus 221 K~iLv~ 226 (290)
..-.+.
T Consensus 83 ~~~~~~ 88 (111)
T 2l6j_A 83 RLELAQ 88 (111)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 53
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.07 E-value=0.14 Score=44.91 Aligned_cols=165 Identities=10% Similarity=-0.015 Sum_probs=101.8
Q ss_pred HHHhHhhhccccccHHHHHHHHHhhCCCCC--CchhhHHHHHHHHHHc-cCchhhhhcccccccccCC---chhHHHHHH
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLA-KCYKAGLSVLEDDIYEINL---PRDFFLYCY 181 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~--~LTs~H~~ll~lcL~a-k~y~~Al~vl~~~i~~i~~---~~~~l~Y~y 181 (290)
++......+.+..++..+..|+.-....+. .....+..+-..+... +.|+.|+...++-+--.+. .......+.
T Consensus 83 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~ 162 (292)
T 1qqe_A 83 AYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 344444567777889999999886643332 1234566777788885 9999999999886532221 222345566
Q ss_pred HHHHHHHHHhcHHHHHHHHHHhhc-cCccchh-HHHHHHHHHHHHHHHHhcCCCCCC-----------CCCCCCHHHHHh
Q 022902 182 YGGMIFIGQKRFRKALELLHNVVT-APMSSIN-AIAVEAYKKYILVSLIHHGQFSST-----------LPKYTSSAAQRN 248 (290)
Q Consensus 182 ygG~i~~~~k~~~~A~~~l~~ais-~P~~~~s-~i~veAyKK~iLv~Ll~~G~~~~~-----------lPk~~s~~~~r~ 248 (290)
-.|.++..+++|++|.++|+.++. .|..... ....++|-...++. +..|+.. . -|.+...
T Consensus 163 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~-~~~g~~~-~A~~~~~~al~l~p~~~~~----- 235 (292)
T 1qqe_A 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ-LAATDAV-AAARTLQEGQSEDPNFADS----- 235 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH-HHTTCHH-HHHHHHHGGGCC------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHH-HHcCCHH-HHHHHHHHHHhhCCCCCCc-----
Confidence 779999999999999999999998 5654321 12333444444433 3335432 1 1111110
Q ss_pred hhhcchhHHHHHHHhcCCChHHHHHHHHHhHHh
Q 022902 249 LKNFSQPYMELVNTYNTGKIVELETYVQTNREK 281 (290)
Q Consensus 249 ~k~~~~pY~~la~af~~~~~~~l~~~~~~~~~~ 281 (290)
..+.-+..+..++..+|.++++..++.+...
T Consensus 236 --~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 236 --RESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp ----HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 0123355678888888888888877776544
No 54
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=95.07 E-value=0.13 Score=51.43 Aligned_cols=143 Identities=13% Similarity=0.032 Sum_probs=93.1
Q ss_pred hhccccccHHHHHHHHH-------hhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHH
Q 022902 114 LLEAPIRGVGPMLTAIR-------KIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMI 186 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~-------r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i 186 (290)
..+.+..++..++.|+. ..+|.. ...+..+.+.++..+.|+.|+..+++-+-. + -+....+|+-|.+
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~--p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSES---VELPLMEVRALLDLGDVAKATRKLDDLAER-V--GWRWRLVWYRAVA 476 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-H--CCCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccc---hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-C--cchHHHHHHHHHH
Confidence 44556678888888882 233433 456788889999999999999999887632 1 1346788899999
Q ss_pred HHHHhcHHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhh---hcchhHHHHHHH
Q 022902 187 FIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---NFSQPYMELVNT 262 (290)
Q Consensus 187 ~~~~k~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k---~~~~pY~~la~a 262 (290)
+..+++|++|...|+.++. .|..... |.-+-. .+...|+.. .+.-| .+.++ .....|..++.+
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~~~~~------~~~lg~-~~~~~g~~~-~~~~~-----~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPGELAP------KLALAA-TAELAGNTD-EHKFY-----QTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCSHH------HHHHHH-HHHHHTCCC-TTCHH-----HHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHH------HHHHHH-HHHHcCChH-HHHHH-----HHHHHhCCchHHHHHHHHHH
Confidence 9999999999999999998 7875322 211111 234457766 32222 22222 234567777777
Q ss_pred h-cCCChHHHHHHH
Q 022902 263 Y-NTGKIVELETYV 275 (290)
Q Consensus 263 f-~~~~~~~l~~~~ 275 (290)
+ ..|+.++-.+..
T Consensus 544 ~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 544 RSAEGDRVGAVRTL 557 (681)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 5 456655443333
No 55
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.04 E-value=0.38 Score=39.83 Aligned_cols=97 Identities=12% Similarity=0.048 Sum_probs=71.5
Q ss_pred HHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCC-c-------------
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-P------------- 173 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~-~------------- 173 (290)
++......++...++..++.++.. +|.. ...+..+-..+...+.++.|+..+++-+- +++ .
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK-APNN---VDCLEACAEMQVCRGQEKDALRMYEKILQ-LEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHH
Confidence 455555667788889999988865 5544 56778888999999999999998887653 322 0
Q ss_pred -------------------hhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 174 -------------------RDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 174 -------------------~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
...-.-+|..|+++..+++|++|..+|+.++. .|..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 00001246679999999999999999999998 7874
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=94.92 E-value=0.16 Score=41.00 Aligned_cols=95 Identities=6% Similarity=-0.126 Sum_probs=73.0
Q ss_pred HHHhHhhh-ccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHH
Q 022902 108 YKDQVLLL-EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMI 186 (290)
Q Consensus 108 ~~~~~~~~-~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i 186 (290)
++...... +....++..+..++. .|....-...+..+...+...+.++.|+..+++-+-.-+ +....++.-|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~ 156 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALA--DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP---QFPPAFKELART 156 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHT--STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHc--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCchHHHHHHHH
Confidence 33444556 777778999999887 333333456788899999999999999999987653222 224567788999
Q ss_pred HHHHhcHHHHHHHHHHhhc-cC
Q 022902 187 FIGQKRFRKALELLHNVVT-AP 207 (290)
Q Consensus 187 ~~~~k~~~~A~~~l~~ais-~P 207 (290)
+..+++|++|..+|+.++. .|
T Consensus 157 ~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 157 KMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999997 67
No 57
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=94.90 E-value=0.05 Score=38.91 Aligned_cols=90 Identities=7% Similarity=-0.212 Sum_probs=66.1
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHH-hc
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ-KR 192 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~-k~ 192 (290)
..++...++..+..++.. +|.. ...+..+...+...+.|+.|+..+++-+-.-+. ......++..|.++..+ ++
T Consensus 18 ~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~l~~~~~~~~~~ 92 (112)
T 2kck_A 18 DAGNYTESIDLFEKAIQL-DPEE---SKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWAAKADALRYIEGK 92 (112)
T ss_dssp SSCCHHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHHHHHHHHTTCSSC
T ss_pred HhhhHHHHHHHHHHHHHh-CcCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHHHHhCC
Confidence 345555677777777764 4433 445677888889999999999998886632222 11456778889999999 99
Q ss_pred HHHHHHHHHHhhc-cCc
Q 022902 193 FRKALELLHNVVT-APM 208 (290)
Q Consensus 193 ~~~A~~~l~~ais-~P~ 208 (290)
|++|.++|+.++. .|.
T Consensus 93 ~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 93 EVEAEIAEARAKLEHHH 109 (112)
T ss_dssp SHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHhhcccC
Confidence 9999999999997 554
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=94.87 E-value=1 Score=39.66 Aligned_cols=154 Identities=6% Similarity=-0.062 Sum_probs=101.3
Q ss_pred hhhhHHHHHHHHHhcCChhhhhhhhHhHHHHHHHHHHhHhhhccccccHHHHHHHHHhhCCCC--CCchhhHHHHHHHHH
Q 022902 74 RANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSST--EHLTTLHPEFLQLCL 151 (290)
Q Consensus 74 ~~~~l~~~v~~fl~~f~~~Qlr~a~~~~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~--~~LTs~H~~ll~lcL 151 (290)
++...+..+........... .....+. .++......+....++..+..++......+ ......+..+...+.
T Consensus 205 ~A~~~~~~al~~~~~~~~~~--~~~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 278 (406)
T 3sf4_A 205 DAVIAHEQRLLIAKEFGDKA--AERRAYS----NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 278 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHH--HHHHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcH--HHHHHHH----HHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHH
Confidence 45555666665554432211 1111222 333344456777778999999887654322 233567788899999
Q ss_pred HccCchhhhhccccccccc---CCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHH
Q 022902 152 LAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSL 227 (290)
Q Consensus 152 ~ak~y~~Al~vl~~~i~~i---~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~L 227 (290)
..+.|+.|+..+++-+-.. .........++.-|.+|..+++|++|.++|+.++. .+...-.....+++..+..+..
T Consensus 279 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 358 (406)
T 3sf4_A 279 LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQM 358 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 9999999999998865322 12344567788899999999999999999999997 5555445566666666665554
Q ss_pred HhcCCCC
Q 022902 228 IHHGQFS 234 (290)
Q Consensus 228 l~~G~~~ 234 (290)
-. |+..
T Consensus 359 ~~-g~~~ 364 (406)
T 3sf4_A 359 VL-GLSY 364 (406)
T ss_dssp HH-HTTS
T ss_pred Hh-hHhH
Confidence 33 6654
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=94.84 E-value=0.18 Score=40.22 Aligned_cols=90 Identities=11% Similarity=0.108 Sum_probs=45.4
Q ss_pred hhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhc
Q 022902 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (290)
Q Consensus 113 ~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~ 192 (290)
...++...++..+..++.. +|+. ...+..+...+...+.++.|...+++-+-.. .+....++.-|.+|..+++
T Consensus 50 ~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~---~~~~~~~~~lg~~~~~~g~ 122 (184)
T 3vtx_A 50 MDIGLPNDAIESLKKFVVL-DTTS---AEAYYILGSANFMIDEKQAAIDALQRAIALN---TVYADAYYKLGLVYDSMGE 122 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHhc-Cchh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHhCC
Confidence 3344444444444444432 2211 2233344444455555555555444432111 1223445566777777777
Q ss_pred HHHHHHHHHHhhc-cCcc
Q 022902 193 FRKALELLHNVVT-APMS 209 (290)
Q Consensus 193 ~~~A~~~l~~ais-~P~~ 209 (290)
|++|.++|+.++. -|..
T Consensus 123 ~~~A~~~~~~~l~~~p~~ 140 (184)
T 3vtx_A 123 HDKAIEAYEKTISIKPGF 140 (184)
T ss_dssp HHHHHHHHHHHHHHCTTC
T ss_pred chhHHHHHHHHHHhcchh
Confidence 7777777777776 5653
No 60
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.84 E-value=0.13 Score=45.79 Aligned_cols=157 Identities=10% Similarity=-0.006 Sum_probs=97.0
Q ss_pred HhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHh
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK 191 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k 191 (290)
....+....++..++.++.. +|.. .-...+..+...+...+.|+.|+..+++-+-.-+ +....++.-|.+|..++
T Consensus 187 ~~~~g~~~~A~~~~~~al~~-~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g 261 (365)
T 4eqf_A 187 PVDSSVLEGVKELYLEAAHQ-NGDM-IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP---EDYSLWNRLGATLANGD 261 (365)
T ss_dssp --CCHHHHHHHHHHHHHHHH-SCSS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT
T ss_pred HhhhhhHHHHHHHHHHHHHh-CcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcC
Confidence 33445556678888888775 4431 1245778889999999999999999988653222 22446678899999999
Q ss_pred cHHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhh---------------hcchh
Q 022902 192 RFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---------------NFSQP 255 (290)
Q Consensus 192 ~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k---------------~~~~p 255 (290)
+|++|..+|+.++. .|.... ++..+..+ +...|+.. .- -....+.++ .....
T Consensus 262 ~~~~A~~~~~~al~~~p~~~~------~~~~l~~~-~~~~g~~~-~A----~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 329 (365)
T 4eqf_A 262 RSEEAVEAYTRALEIQPGFIR------SRYNLGIS-CINLGAYR-EA----VSNFLTALSLQRKSRNQQQVPHPAISGNI 329 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHH------HHHHHHHH-HHHHTCCH-HH----HHHHHHHHHHHHCC------------CHH
T ss_pred CHHHHHHHHHHHHhcCCCchH------HHHHHHHH-HHHCCCHH-HH----HHHHHHHHHhCcccCCCcccchhhhHHHH
Confidence 99999999999998 676421 12111111 12224433 10 011111111 12455
Q ss_pred HHHHHHHhc-CCChHHHHHHHHHhHHhhhcc
Q 022902 256 YMELVNTYN-TGKIVELETYVQTNREKFESV 285 (290)
Q Consensus 256 Y~~la~af~-~~~~~~l~~~~~~~~~~f~~D 285 (290)
|..++.++. .|..+..+...++.-+.|++.
T Consensus 330 ~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~ 360 (365)
T 4eqf_A 330 WAALRIALSLMDQPELFQAANLGDLDVLLRA 360 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTCCGGGTTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhHHHHHHh
Confidence 677777764 577777777777666666543
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=94.84 E-value=0.76 Score=41.12 Aligned_cols=94 Identities=7% Similarity=-0.027 Sum_probs=62.8
Q ss_pred HhhhccccccHHHHHHHHHhhCCC--CCCchhhHHHHHHHHHHccCchhhhhcccccccccC---CchhHHHHHHHHHHH
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSS--TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---LPRDFFLYCYYGGMI 186 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~--~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~---~~~~~l~Y~yygG~i 186 (290)
....++...++..++.++...... .......+..+...+...+.|+.|+..+++-+-... ........++.-|.+
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 96 YFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNV 175 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 334456666777777776654221 223445667777788888888888888777543221 134556677778888
Q ss_pred HHHHhc-----------------HHHHHHHHHHhhc
Q 022902 187 FIGQKR-----------------FRKALELLHNVVT 205 (290)
Q Consensus 187 ~~~~k~-----------------~~~A~~~l~~ais 205 (290)
|..+++ |++|.++++.++.
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 888888 8888888888776
No 62
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=94.76 E-value=0.17 Score=42.45 Aligned_cols=95 Identities=8% Similarity=0.002 Sum_probs=72.1
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHH----
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG---- 189 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~---- 189 (290)
..++...++..+..++... |.+......+..+...+...+.|+.|+..+++-+-..|.....-.=+|+.|+++..
T Consensus 16 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~ 94 (225)
T 2yhc_A 16 QDGNWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS 94 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh
Confidence 3466666888888888764 43333445778888999999999999999998775445443443446788888876
Q ss_pred --------------HhcHHHHHHHHHHhhc-cCcc
Q 022902 190 --------------QKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 190 --------------~k~~~~A~~~l~~ais-~P~~ 209 (290)
++++++|...|+.++. .|.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~ 129 (225)
T 2yhc_A 95 ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS 129 (225)
T ss_dssp -------------CCHHHHHHHHHHHHHHTTCTTC
T ss_pred hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC
Confidence 5799999999999998 7875
No 63
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=94.74 E-value=0.2 Score=40.67 Aligned_cols=95 Identities=11% Similarity=0.075 Sum_probs=73.8
Q ss_pred hHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCC-------------chhHH
Q 022902 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-------------PRDFF 177 (290)
Q Consensus 111 ~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~-------------~~~~l 177 (290)
.....+....++..+..|+.. +|.. ...+..+...+...+.|+.|+..+++-+-..+. ..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~-~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 121 (213)
T 1hh8_A 46 MYTILKNMTEAEKAFTRSINR-DKHL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC 121 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-Cccc---hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccch
Confidence 334456777788999988875 4432 567888999999999999999998876542221 12456
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 178 ~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
..++.-|.+|..+++|++|..+|+.++. .|..
T Consensus 122 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 122 EVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 7789999999999999999999999998 6764
No 64
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.72 E-value=0.081 Score=37.89 Aligned_cols=61 Identities=16% Similarity=0.084 Sum_probs=48.8
Q ss_pred HHHHHHHccCchhhhhcccccccccCCchhHHH-HHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 146 FLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFL-YCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 146 ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~-Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
....++..+.|+.|+..+++-+-.-+ . ... .++.-|.+|..+++|++|..+|+.++. .|..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p--~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP--V-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS--S-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--C-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 45677889999999999988653222 2 234 778889999999999999999999998 6775
No 65
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.71 E-value=0.41 Score=43.37 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=84.9
Q ss_pred hhhhHHHHHHHHHhcCChhhhhhhhHhHHHHHHHHHHh-HhhhccccccHHHHHHHHHhhCCCC--CCchhhHHHHHHHH
Q 022902 74 RANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQ-VLLLEAPIRGVGPMLTAIRKIQSST--EHLTTLHPEFLQLC 150 (290)
Q Consensus 74 ~~~~l~~~v~~fl~~f~~~Qlr~a~~~~~~l~~~~~~~-~~~~~~p~~~i~~L~~Ai~r~~~~~--~~LTs~H~~ll~lc 150 (290)
+..+.+..+..+...++.... ...+....+. ....+....++...+.++....... .....++..+.++.
T Consensus 73 ~a~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 145 (434)
T 4b4t_Q 73 KLREFIPHSTEYMMQFAKSKT-------VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLH 145 (434)
T ss_dssp HHHHHHHHTHHHHHTSCHHHH-------HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchHH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 445556666666665543211 1112222221 1123444556777777766553222 22356888999999
Q ss_pred HHccCchhhhhccccccccc---CCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 151 LLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 151 L~ak~y~~Al~vl~~~i~~i---~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
...+.|+.|++++..-.... +.......++..-|.+|..+++|++|..+++.+++ .|.
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 99999999999998754332 23567789999999999999999999999999987 444
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=94.70 E-value=0.16 Score=43.20 Aligned_cols=97 Identities=6% Similarity=-0.089 Sum_probs=74.6
Q ss_pred HhHhhhccccccHHHHHHHHHhhC----CCCCCchhhHHHHHHHHHHccCchhhhhccccccccc-----CCchhHHHHH
Q 022902 110 DQVLLLEAPIRGVGPMLTAIRKIQ----SSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI-----NLPRDFFLYC 180 (290)
Q Consensus 110 ~~~~~~~~p~~~i~~L~~Ai~r~~----~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i-----~~~~~~l~Y~ 180 (290)
......+....++..++.++.... ++.......+..+...+...+.|+.|+..+++-+-.. +........+
T Consensus 77 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 77 LVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 333445666778888888887652 2233456778889999999999999999998865322 2235667788
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHhhcc
Q 022902 181 YYGGMIFIGQKRFRKALELLHNVVTA 206 (290)
Q Consensus 181 yygG~i~~~~k~~~~A~~~l~~ais~ 206 (290)
+.-|.++..+++|++|.++|+.++..
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999999999999975
No 67
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=94.66 E-value=0.058 Score=40.23 Aligned_cols=67 Identities=12% Similarity=0.019 Sum_probs=53.5
Q ss_pred HHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 143 HPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 143 H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
+-.+...++..+.|+.|...+++-+-..|.....-..+|.-|.++..+++|++|..+|+.++. .|..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 345667888999999999999886643343333447788899999999999999999999997 6764
No 68
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.65 E-value=0.066 Score=39.30 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 140 Ts~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
...+..+-..++..+.|+.|+..+++-+- .++ +....++.-|.+|..+++|++|.++|+.++. .|..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVE-TDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 45677888999999999999999998763 221 2345778889999999999999999999997 5553
No 69
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=94.65 E-value=0.12 Score=46.75 Aligned_cols=98 Identities=8% Similarity=-0.012 Sum_probs=75.5
Q ss_pred HHHhHhhhccccccHHHHHHHHHhhCCCCC------------CchhhHHHHHHHHHHccCchhhhhcccccccccCCchh
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTE------------HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRD 175 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~------------~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~ 175 (290)
.+......++...++..++.|+... |... .....+..+..+++..+.|+.|+..+++-+- +++ +
T Consensus 153 ~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-~~p--~ 228 (336)
T 1p5q_A 153 RGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE-LDS--N 228 (336)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT--T
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC--C
Confidence 3444445677777899999998754 3321 1146788899999999999999999988763 221 2
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 176 FFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 176 ~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
....+|..|.+|..+++|++|..+|+.++. .|..
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 456778999999999999999999999998 7875
No 70
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=94.62 E-value=0.22 Score=41.49 Aligned_cols=99 Identities=7% Similarity=-0.069 Sum_probs=73.2
Q ss_pred HHHhHhhhccccccHHHHHHHHHhh----CCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccC------------
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKI----QSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN------------ 171 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~----~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~------------ 171 (290)
++......++...++..++.++... .+........+..+.+.+...+.++.|+..+++-+-..+
T Consensus 133 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 212 (283)
T 3edt_B 133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNK 212 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHH
Confidence 3444445577777888888888763 122333456778899999999999999988876542100
Q ss_pred ----------------------------------CchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcc
Q 022902 172 ----------------------------------LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA 206 (290)
Q Consensus 172 ----------------------------------~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~ 206 (290)
...+....++.-|.+|..+++|++|..+|+.++..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 213 PIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12456778889999999999999999999999863
No 71
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.60 E-value=0.12 Score=48.97 Aligned_cols=99 Identities=10% Similarity=0.018 Sum_probs=73.6
Q ss_pred HHHhHhhhccccccHHHHHHHHHhhCCCC-----------CCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhH
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKIQSST-----------EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDF 176 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~-----------~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~ 176 (290)
.+..+...++...++..+..|+......+ ......+..+..++++.+.|+.|+..+++-+- +++ +.
T Consensus 274 ~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-~~p--~~ 350 (457)
T 1kt0_A 274 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG-LDS--AN 350 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HST--TC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCC--cc
Confidence 34444455677778899999887543321 01246788899999999999999999988763 221 34
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 177 FLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 177 l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
...+|..|.+|..+++|++|..+|+.++. .|..
T Consensus 351 ~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 351 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 66788999999999999999999999998 6764
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=94.51 E-value=0.78 Score=41.28 Aligned_cols=98 Identities=11% Similarity=-0.049 Sum_probs=67.6
Q ss_pred HHHhHhhhccccccHHHHHHHHHhhCCCCC---CchhhHHHHHHHHHHccCchhhhhccccccccc---CCchhHHHHHH
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTE---HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCY 181 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~---~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i---~~~~~~l~Y~y 181 (290)
++......+++..++..+..|+.-+...+. .....+..+-..+...+.|+.|++.+++-+--. +.......-++
T Consensus 147 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 226 (378)
T 3q15_A 147 VAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL 226 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333344567777788888888877654332 345667788888889999999988887754311 12334455666
Q ss_pred HHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 182 YGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 182 ygG~i~~~~k~~~~A~~~l~~ais 205 (290)
.-|.+|..+++|++|.++|+.++.
T Consensus 227 ~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 227 NIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777888888888888888888776
No 73
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=94.49 E-value=0.18 Score=41.91 Aligned_cols=94 Identities=6% Similarity=-0.051 Sum_probs=70.1
Q ss_pred hHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHH
Q 022902 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (290)
Q Consensus 111 ~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~ 190 (290)
.....+....++..+..++. .+....-...+..+...+...+.++.|...+++-+-.-+ +....++.-|.++..+
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQ--DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR---NQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHh--CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHc
Confidence 33445666778888888876 222223456778888999999999999999988653222 2355668889999999
Q ss_pred hcHHHHHHHHHHhhc-cCcc
Q 022902 191 KRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 191 k~~~~A~~~l~~ais-~P~~ 209 (290)
++|++|..+|+.++. .|..
T Consensus 189 g~~~~A~~~~~~~~~~~~~~ 208 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGGGQN 208 (252)
T ss_dssp TCHHHHHHHHHHHHTTSCCC
T ss_pred CCHHHHHHHHHHHHHhCcCc
Confidence 999999999999997 5653
No 74
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=94.45 E-value=0.088 Score=48.73 Aligned_cols=94 Identities=12% Similarity=0.043 Sum_probs=70.4
Q ss_pred hhhccccccHHHHHHHHHhhCC------------CCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHH
Q 022902 113 LLLEAPIRGVGPMLTAIRKIQS------------STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC 180 (290)
Q Consensus 113 ~~~~~p~~~i~~L~~Ai~r~~~------------~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~ 180 (290)
...++...++..++.|+..... ........+..+..+++..+.|+.|+..+++-+- +++ +....+
T Consensus 234 ~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-~~p--~~~~a~ 310 (370)
T 1ihg_A 234 FKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE-IDP--SNTKAL 310 (370)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCT--TCHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-hCc--hhHHHH
Confidence 3445666677888888763211 0112356778888999999999999999988763 322 346678
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 181 YYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 181 yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
|..|.+|..+++|++|..+|+.++. .|..
T Consensus 311 ~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 311 YRRAQGWQGLKEYDQALADLKKAQEIAPED 340 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999999999998 7864
No 75
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=94.44 E-value=0.077 Score=44.76 Aligned_cols=158 Identities=9% Similarity=0.039 Sum_probs=79.2
Q ss_pred HHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHH-HH
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGG-MI 186 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG-~i 186 (290)
++......+....++..+..++.. +|.. ...+..+...+...+.|+.|+..+++-+-. + +.+ ...++.-| .+
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~-~~~-~~~~~~l~~~~ 152 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDR-DTTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-T-TTD-PKVFYELGQAY 152 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STTC---THHHHHHHHHHHHTTCHHHHHHHHGGGCCS-S-CCC-HHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc-Cccc---HHHHHHHHHHHHHccCHHHHHHHHHHHhhc-C-CCc-HHHHHHHHHHH
Confidence 344444555555666666666553 3322 245566666666667777776666665432 1 222 23334444 44
Q ss_pred HHHHhcHHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhhh-----------cch
Q 022902 187 FIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN-----------FSQ 254 (290)
Q Consensus 187 ~~~~k~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k~-----------~~~ 254 (290)
|.. ++|++|...|+.++. .|.. .+++-....+.. ..|+-. .... .-....+.++. ...
T Consensus 153 ~~~-~~~~~A~~~~~~a~~~~p~~------~~~~~~~~~~~~-~~~~~~-~~~~-A~~~~~~a~~~~~~~~~~~~~~~~~ 222 (272)
T 3u4t_A 153 YYN-KEYVKADSSFVKVLELKPNI------YIGYLWRARANA-AQDPDT-KQGL-AKPYYEKLIEVCAPGGAKYKDELIE 222 (272)
T ss_dssp HHT-TCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHH-HHSTTC-SSCT-THHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHhCccc------hHHHHHHHHHHH-HcCcch-hhHH-HHHHHHHHHHHHhcccccchHHHHH
Confidence 443 377777777777776 5554 122222222222 224421 1111 11222222222 124
Q ss_pred hHHHHHHHh-cCCChHHHHHHHHHhHHhh
Q 022902 255 PYMELVNTY-NTGKIVELETYVQTNREKF 282 (290)
Q Consensus 255 pY~~la~af-~~~~~~~l~~~~~~~~~~f 282 (290)
.|..++..+ ..|+.++-....++.-+..
T Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 223 ANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 677788887 4688777666666544433
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=94.36 E-value=1.2 Score=39.89 Aligned_cols=98 Identities=13% Similarity=0.130 Sum_probs=70.3
Q ss_pred HHHhHhhhccccccHHHHHHHHHhhCCCCC---CchhhHHHHHHHHHHccCchhhhhccccccccc---CCchhHHHHHH
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTE---HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCY 181 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~---~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i---~~~~~~l~Y~y 181 (290)
++......++...++..+..|+.-+...+. .....+..+-..+...+.|+.|+..+++-+--. +.......-++
T Consensus 149 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 228 (383)
T 3ulq_A 149 MSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY 228 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 333344567777788889998887754432 234567778888889999999999888765322 12334455677
Q ss_pred HHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 182 YGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 182 ygG~i~~~~k~~~~A~~~l~~ais 205 (290)
.-|.+|..+++|++|..+|+.++.
T Consensus 229 ~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 229 NIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788888888888888888888887
No 77
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.34 E-value=0.13 Score=43.10 Aligned_cols=87 Identities=14% Similarity=0.063 Sum_probs=70.5
Q ss_pred ccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHH
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRK 195 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~ 195 (290)
+....++..++.|+.. +|+. ...+..+-..+...+.++.|+..+++-+- ++ +....++.-|.+|..+++|++
T Consensus 98 g~~~~A~~~~~~al~~-~P~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~---~~~~~~~~la~~~~~~g~~~~ 169 (217)
T 2pl2_A 98 GYLEQALSVLKDAERV-NPRY---APLHLQRGLVYALLGERDKAEASLKQALA-LE---DTPEIRSALAELYLSMGRLDE 169 (217)
T ss_dssp HHHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHHHHHh-Cccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHh-cc---cchHHHHHHHHHHHHcCCHHH
Confidence 5556688888888764 6643 56778899999999999999999988653 22 456677899999999999999
Q ss_pred HHHHHHHhhc-cCccc
Q 022902 196 ALELLHNVVT-APMSS 210 (290)
Q Consensus 196 A~~~l~~ais-~P~~~ 210 (290)
|..+|+.++. .|...
T Consensus 170 A~~~~~~al~~~P~~~ 185 (217)
T 2pl2_A 170 ALAQYAKALEQAPKDL 185 (217)
T ss_dssp HHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHhCCCCh
Confidence 9999999998 78753
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=94.20 E-value=0.39 Score=37.15 Aligned_cols=91 Identities=12% Similarity=0.083 Sum_probs=66.1
Q ss_pred HhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHh
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK 191 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k 191 (290)
....+....++..+..++.. +|.. ...+..+...+...+.++.|...+++-+-..+ +....++.-|.++..++
T Consensus 52 ~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~ 124 (186)
T 3as5_A 52 YVKTGAVDRGTELLERSLAD-APDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAEANP---INFNVRFRLGVALDNLG 124 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc---HhHHHHHHHHHHHHHcC
Confidence 33456666778888888765 3332 45567778888899999999988887553222 23456677889999999
Q ss_pred cHHHHHHHHHHhhc-cCcc
Q 022902 192 RFRKALELLHNVVT-APMS 209 (290)
Q Consensus 192 ~~~~A~~~l~~ais-~P~~ 209 (290)
+|++|.++|+.++. .|..
T Consensus 125 ~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 125 RFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHhcCccc
Confidence 99999999999987 5553
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=94.18 E-value=0.71 Score=38.01 Aligned_cols=90 Identities=9% Similarity=-0.032 Sum_probs=70.2
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..++...++..+..++..-++.. ...+..+-..+...+.|+.|+..+++-+-. + .+....++.-|.+|..+++|
T Consensus 19 ~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~--p~~~~~~~~l~~~~~~~~~~ 92 (228)
T 4i17_A 19 NAKNYAVAFEKYSEYLKLTNNQD---SVTAYNCGVCADNIKKYKEAADYFDIAIKK-N--YNLANAYIGKSAAYRDMKNN 92 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T--CSHHHHHHHHHHHHHHTTCH
T ss_pred HccCHHHHHHHHHHHHhccCCCC---cHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-C--cchHHHHHHHHHHHHHcccH
Confidence 44666668888888886543122 245666889999999999999999887632 2 23567788899999999999
Q ss_pred HHHHHHHHHhhc-cCcc
Q 022902 194 RKALELLHNVVT-APMS 209 (290)
Q Consensus 194 ~~A~~~l~~ais-~P~~ 209 (290)
++|..+|+.++. .|..
T Consensus 93 ~~A~~~~~~al~~~p~~ 109 (228)
T 4i17_A 93 QEYIATLTEGIKAVPGN 109 (228)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHCCCc
Confidence 999999999998 7875
No 80
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=94.09 E-value=0.42 Score=38.13 Aligned_cols=95 Identities=7% Similarity=-0.051 Sum_probs=71.7
Q ss_pred hHhhhccccccHHHHHHHHHhhCCCC--CCchhhHHHHHHHHHHccCchhhhhccccccccc---C-CchhHHHHHHHHH
Q 022902 111 QVLLLEAPIRGVGPMLTAIRKIQSST--EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---N-LPRDFFLYCYYGG 184 (290)
Q Consensus 111 ~~~~~~~p~~~i~~L~~Ai~r~~~~~--~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i---~-~~~~~l~Y~yygG 184 (290)
.....+....++..+..|+......+ ......+..+-..+...+.|+.|+..+++-+-.. + .+......++.-|
T Consensus 35 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 114 (203)
T 3gw4_A 35 VYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVA 114 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 33345666678888888887665433 2345667788889999999999999998864321 2 1235567788899
Q ss_pred HHHHHHhcHHHHHHHHHHhhc
Q 022902 185 MIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 185 ~i~~~~k~~~~A~~~l~~ais 205 (290)
.++..+++|++|..+|+.++.
T Consensus 115 ~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 115 TVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999986
No 81
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.08 E-value=0.16 Score=43.61 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=46.7
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCC------chhHHHHHHHHHHHH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL------PRDFFLYCYYGGMIF 187 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~------~~~~l~Y~yygG~i~ 187 (290)
..+....++..++.++.. +|.. ...+..+...+...+.++.|+..+++-+-..+. .......++.-|.+|
T Consensus 171 ~~~~~~~A~~~~~~al~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSI-APED---PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HTTCHHHHHHHHHHHHTT-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 344555556666665543 2222 344555666666666666666666554322110 122233444555566
Q ss_pred HHHhcHHHHHHHHHHhhc-cCc
Q 022902 188 IGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 188 ~~~k~~~~A~~~l~~ais-~P~ 208 (290)
..+++|++|..+|+.++. .|.
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHhhCcc
Confidence 666666666666666664 444
No 82
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=94.07 E-value=0.71 Score=40.09 Aligned_cols=94 Identities=10% Similarity=0.011 Sum_probs=71.7
Q ss_pred HhhhccccccHHHHHHHHHhhC---CCCCCchhhHHHHHHHHHHccCchhhhhccccccccc---CCchhHHHHHHHHHH
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQ---SSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGM 185 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~---~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i---~~~~~~l~Y~yygG~ 185 (290)
....++...++..+..|+..+. ........++..+...+...+.|+.|+..+++-+--. .........++.-|.
T Consensus 165 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 244 (293)
T 3u3w_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGE 244 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 3345667778899999886553 2233455678889999999999999999998865311 113345778899999
Q ss_pred HHHHHh-cHHHHHHHHHHhhc
Q 022902 186 IFIGQK-RFRKALELLHNVVT 205 (290)
Q Consensus 186 i~~~~k-~~~~A~~~l~~ais 205 (290)
+|..++ +|++|.++|+.|+.
T Consensus 245 ~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 245 CLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHHHHHH
Confidence 999999 58999999999986
No 83
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.05 E-value=0.15 Score=35.36 Aligned_cols=67 Identities=10% Similarity=0.087 Sum_probs=53.6
Q ss_pred hhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 140 Ts~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
...+..+...+...+.|+.|++.+++-+-.-+ +....++.-|.++..+++|++|..+|+.++. .|..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34566778888999999999999888663222 2346677889999999999999999999998 6764
No 84
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=94.00 E-value=0.93 Score=39.06 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=40.9
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHH---------HHHHH
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC---------YYGGM 185 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~---------yygG~ 185 (290)
.+.+..++..+..++.. +|.. ...+..+...+...+.++.|...+++-+-..+...+...++ .-.|.
T Consensus 167 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 167 EGEPRKAISDLKAASKL-KSDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp TTCHHHHHHHHHHHHTT-CSCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555554433 2211 23444555555555555555555554432111111111111 11255
Q ss_pred HHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 186 IFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 186 i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
++...++|++|..+|+.++. .|.
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTEPS 266 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Confidence 56666666666666666665 444
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=93.94 E-value=0.24 Score=38.40 Aligned_cols=92 Identities=4% Similarity=-0.123 Sum_probs=70.2
Q ss_pred hHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHH
Q 022902 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (290)
Q Consensus 111 ~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~ 190 (290)
.....++...++..+..++.. +|.. ...+..+.+.+...+.++.|...+++-+-..+ +....++.-|.++..+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEA-NPIN---FNVRFRLGVALDNLGRFDEAIDSFKIALGLRP---NEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHhc-CcHh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHc
Confidence 334456677788888888775 3322 45678888999999999999999988653222 2246678899999999
Q ss_pred hcHHHHHHHHHHhhc-cCcc
Q 022902 191 KRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 191 k~~~~A~~~l~~ais-~P~~ 209 (290)
++|++|..+++.++. .|..
T Consensus 158 ~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 158 GRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp TCHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHcCCCc
Confidence 999999999999997 5654
No 86
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=93.91 E-value=1.8 Score=39.08 Aligned_cols=97 Identities=5% Similarity=-0.037 Sum_probs=74.1
Q ss_pred HHhHhhhccccccHHHHHHHHHhhCCCC-CCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHH
Q 022902 109 KDQVLLLEAPIRGVGPMLTAIRKIQSST-EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIF 187 (290)
Q Consensus 109 ~~~~~~~~~p~~~i~~L~~Ai~r~~~~~-~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~ 187 (290)
+......+....++..+..++.. +|.. ......+..+...+...+.++.|+..+++-+-.-+ +....++.-|.++
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKT-EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP---DNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHH
Confidence 34445567777789999998874 4442 22345778889999999999999999988653212 2346678889999
Q ss_pred HHHhcHHHHHHHHHHhhc-cCcc
Q 022902 188 IGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 188 ~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
..+++|++|..+|+.++. .|..
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSC
T ss_pred HHhcCHHHHHHHHHHHHHhCcch
Confidence 999999999999999998 6875
No 87
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=93.89 E-value=0.25 Score=39.32 Aligned_cols=88 Identities=10% Similarity=0.087 Sum_probs=66.8
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..+....++..+..++.. +|.. ...+..+-..+...+.|+.|+..+++-+- +++ +....++.-|.+|..+++|
T Consensus 85 ~~~~~~~a~~~~~~a~~~-~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~-~~p--~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIAL-NTVY---ADAYYKLGLVYDSMGEHDKAIEAYEKTIS-IKP--GFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT--TCHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHHh-Cccc---hHHHHHHHHHHHHhCCchhHHHHHHHHHH-hcc--hhhhHHHHHHHHHHHCCCH
Confidence 345555577777777654 5433 34667788899999999999999988653 222 2356678889999999999
Q ss_pred HHHHHHHHHhhc-cCc
Q 022902 194 RKALELLHNVVT-APM 208 (290)
Q Consensus 194 ~~A~~~l~~ais-~P~ 208 (290)
++|.++|+.|+. -|.
T Consensus 158 ~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHhCCcc
Confidence 999999999997 564
No 88
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=93.79 E-value=0.48 Score=48.09 Aligned_cols=95 Identities=12% Similarity=0.022 Sum_probs=66.3
Q ss_pred HHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHH
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIF 187 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~ 187 (290)
++....+.++...++..++.|+.. +|+. ...|..+-..+...+.|+.|+..+++-+- ++ -+....++.-|.+|
T Consensus 15 LG~~~~~~G~~~eAi~~~~kAl~l-~P~~---~~a~~nLg~~l~~~g~~~eA~~~~~~Al~-l~--P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 15 LANIKREQGNIEEAVRLYRKALEV-FPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIR-IS--PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC--CCCHHHHHHHHHHH
Confidence 333444556666678888887753 5533 55677788888888888888888777652 22 13456677778888
Q ss_pred HHHhcHHHHHHHHHHhhc-cCcc
Q 022902 188 IGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 188 ~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
..+++|++|.++|+.++. .|..
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~~ 110 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPAF 110 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Confidence 888888888888888887 6764
No 89
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=93.74 E-value=0.29 Score=42.65 Aligned_cols=94 Identities=7% Similarity=0.055 Sum_probs=68.7
Q ss_pred hhhccccccHHHHHHHHHhhCCCCC--CchhhHHHHHHHHHHccCchhhhhccccccc---ccCCchh-HHHHHHHHHHH
Q 022902 113 LLLEAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIY---EINLPRD-FFLYCYYGGMI 186 (290)
Q Consensus 113 ~~~~~p~~~i~~L~~Ai~r~~~~~~--~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~---~i~~~~~-~l~Y~yygG~i 186 (290)
...+....++..+..|+........ .....+..+-..+...+.|+.|+..+++-+- ..+.... ....++.-|.+
T Consensus 126 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~ 205 (293)
T 2qfc_A 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA 205 (293)
T ss_dssp HTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHH
Confidence 3445666788889998865433222 1244677888899999999999999988652 1222222 23688899999
Q ss_pred HHHHhcHHHHHHHHHHhhcc
Q 022902 187 FIGQKRFRKALELLHNVVTA 206 (290)
Q Consensus 187 ~~~~k~~~~A~~~l~~ais~ 206 (290)
|..+++|++|.++|+.++..
T Consensus 206 y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 206 LYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999863
No 90
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=93.71 E-value=0.23 Score=40.97 Aligned_cols=91 Identities=12% Similarity=0.026 Sum_probs=65.5
Q ss_pred HHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHH
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIF 187 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~ 187 (290)
++......+....++..+..++.. +|.. ...+..+...+...+.|+.|+..+++-+-.-+ +....++.-|.++
T Consensus 145 ~~~~~~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 145 EGKEYFTKSDWPNAVKAYTEMIKR-APED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP---NFVRAYIRKATAQ 217 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc-Cccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH---HHHHHHHHHHHHH
Confidence 333444556666788888888765 3332 45677788888888999999888887653212 2355677788899
Q ss_pred HHHhcHHHHHHHHHHhhc
Q 022902 188 IGQKRFRKALELLHNVVT 205 (290)
Q Consensus 188 ~~~k~~~~A~~~l~~ais 205 (290)
..+++|++|.++|+.++.
T Consensus 218 ~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 218 IAVKEYASALETLDAART 235 (258)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999999998886
No 91
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=93.69 E-value=2.1 Score=37.41 Aligned_cols=82 Identities=11% Similarity=0.021 Sum_probs=48.0
Q ss_pred cccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhH-HHHHHHHHHHHHHHhcHHHHH
Q 022902 119 IRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDF-FLYCYYGGMIFIGQKRFRKAL 197 (290)
Q Consensus 119 ~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~-l~Y~yygG~i~~~~k~~~~A~ 197 (290)
..++..+..|+..++|.. ..+|..+.......+.++.|..+.++-+- +++ .+. .-|.-| |.++..++++++|.
T Consensus 81 ~~A~~~~~rAl~~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p-~~~~~~~~~~-~~~~~~~~~~~~A~ 154 (308)
T 2ond_A 81 DEAANIYERAISTLLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLA-IED-IDPTLVYIQY-MKFARRAEGIKSGR 154 (308)
T ss_dssp HHHHHHHHHHHTTTTTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SSS-SCTHHHHHHH-HHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHhCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-ccc-cCccHHHHHH-HHHHHHhcCHHHHH
Confidence 345666667766555533 34666666777777777777777666553 221 111 123323 45566677777777
Q ss_pred HHHHHhhcc
Q 022902 198 ELLHNVVTA 206 (290)
Q Consensus 198 ~~l~~ais~ 206 (290)
..|+.++..
T Consensus 155 ~~~~~a~~~ 163 (308)
T 2ond_A 155 MIFKKARED 163 (308)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHhc
Confidence 777777763
No 92
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=93.67 E-value=2.2 Score=38.51 Aligned_cols=156 Identities=11% Similarity=0.057 Sum_probs=76.9
Q ss_pred HhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHH---------HH
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC---------YY 182 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~---------yy 182 (290)
....+....++..+..++... |.. ...+..+...+...+.++.|+..+++-+-.-+........+ .-
T Consensus 187 ~~~~g~~~~A~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 187 FIKEGEPRKAISDLKAASKLK-NDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHTTCGGGGHHHHHHHHHHH-CSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666543 221 34456666666777777777776666542112122221111 12
Q ss_pred HHHHHHHHhcHHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhh---hcchhHHH
Q 022902 183 GGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---NFSQPYME 258 (290)
Q Consensus 183 gG~i~~~~k~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k---~~~~pY~~ 258 (290)
.|.++...++|++|..+|+.++. .|... .+..++|..+..+ +...|+.. . .-....+.++ .....|..
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~~~~~l~~~-~~~~g~~~-~----A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKTEPSIA--EYTVRSKERICHC-FSKDEKPV-E----AIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCSSH--HHHHHHHHHHHHH-HHTTTCHH-H----HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHH-HHHCCCHH-H----HHHHHHHHHHhCcccHHHHHH
Confidence 27777777777777777777776 45521 1222233222221 12234332 1 0111122221 13356777
Q ss_pred HHHHh-cCCChHHHHHHHHHhH
Q 022902 259 LVNTY-NTGKIVELETYVQTNR 279 (290)
Q Consensus 259 la~af-~~~~~~~l~~~~~~~~ 279 (290)
++.++ ..|+.++-....++..
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al 356 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQ 356 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH
Confidence 77776 4566666555555443
No 93
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=93.61 E-value=0.2 Score=44.12 Aligned_cols=153 Identities=10% Similarity=0.037 Sum_probs=95.4
Q ss_pred ccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHH
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRK 195 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~ 195 (290)
+....++..+..++.. +|... -...+..+...+...+.|+.|+..+++-+-.-+ +....++.-|.++..+++|++
T Consensus 195 ~~~~~A~~~~~~a~~~-~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 195 SLFLEVKELFLAAVRL-DPTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP---NDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHH-STTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHHh-CcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHcCCHHH
Confidence 4445577778877764 54321 356778889999999999999999988653222 224567788999999999999
Q ss_pred HHHHHHHhhc-cCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhh---h-----------cchhHHHHH
Q 022902 196 ALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---N-----------FSQPYMELV 260 (290)
Q Consensus 196 A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k---~-----------~~~pY~~la 260 (290)
|..+|+.++. .|... +++..+..+. ...|+.. .- -....+.++ . ....|..++
T Consensus 270 A~~~~~~al~~~~~~~------~~~~~l~~~~-~~~g~~~-~A----~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (368)
T 1fch_A 270 AVAAYRRALELQPGYI------RSRYNLGISC-INLGAHR-EA----VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337 (368)
T ss_dssp HHHHHHHHHHHCTTCH------HHHHHHHHHH-HHHTCHH-HH----HHHHHHHHHHHHTC------CCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcH------HHHHHHHHHH-HHCCCHH-HH----HHHHHHHHHhCCCCCCccccccchhhHHHHHHH
Confidence 9999999997 67542 1121111111 2224332 10 011111111 1 135677888
Q ss_pred HHh-cCCChHHHHHHHHHhHHhhhcc
Q 022902 261 NTY-NTGKIVELETYVQTNREKFESV 285 (290)
Q Consensus 261 ~af-~~~~~~~l~~~~~~~~~~f~~D 285 (290)
.++ ..|+.++-..+..+.-+.|.++
T Consensus 338 ~~~~~~g~~~~A~~~~~~~l~~~~~~ 363 (368)
T 1fch_A 338 LALSMLGQSDAYGAADARDLSTLLTM 363 (368)
T ss_dssp HHHHHHTCGGGHHHHHTTCHHHHHHH
T ss_pred HHHHHhCChHhHHHhHHHHHHHHHHh
Confidence 887 4578777777776666666543
No 94
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=93.60 E-value=2.5 Score=39.75 Aligned_cols=96 Identities=11% Similarity=0.098 Sum_probs=73.8
Q ss_pred hHhhhccccccHHHHHHHHHhhC---CCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHH
Q 022902 111 QVLLLEAPIRGVGPMLTAIRKIQ---SSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIF 187 (290)
Q Consensus 111 ~~~~~~~p~~~i~~L~~Ai~r~~---~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~ 187 (290)
.....++...++..+..++.... ..+......+..+...|...+.++.|...+++-+-.-+ +....++.-|.+|
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST---NDANVHTAIALVY 560 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS---CCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CChHHHHHHHHHH
Confidence 33345667778888988887652 13443467889999999999999999999988653212 2346677889999
Q ss_pred HHHhcHHHHHHHHHHhhc-cCcc
Q 022902 188 IGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 188 ~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
...++|++|.++|+.++. .|..
T Consensus 561 ~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 561 LHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999998 6775
No 95
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=93.59 E-value=0.31 Score=43.02 Aligned_cols=91 Identities=12% Similarity=0.072 Sum_probs=68.4
Q ss_pred HHHhHhhhccccccHHHHHHHHHh-hCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHH
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRK-IQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMI 186 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r-~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i 186 (290)
+...+...+....++..+...+.. .+|+. +..|..+-..+...+.++.|+..++++ +....++..|.+
T Consensus 71 la~~~~~~~~~~~A~~~l~~ll~~~~~P~~---~~~~~~la~~~~~~g~~~~Al~~l~~~--------~~~~~~~~l~~~ 139 (291)
T 3mkr_A 71 FAEYLASHSRRDAIVAELDREMSRSVDVTN---TTFLLMAASIYFYDQNPDAALRTLHQG--------DSLECMAMTVQI 139 (291)
T ss_dssp HHHHHHCSTTHHHHHHHHHHHHHSCCCCSC---HHHHHHHHHHHHHTTCHHHHHHHHTTC--------CSHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHHHHHhcccCCCC---HHHHHHHHHHHHHCCCHHHHHHHHhCC--------CCHHHHHHHHHH
Confidence 334333444455577777777754 24543 566888889999999999999999982 345677788999
Q ss_pred HHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 187 FIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 187 ~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
+..++++++|...|+.++. .|..
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~~p~~ 163 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQDEDA 163 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCc
Confidence 9999999999999999997 6664
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=93.52 E-value=0.11 Score=41.07 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=62.5
Q ss_pred cccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHH
Q 022902 119 IRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALE 198 (290)
Q Consensus 119 ~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~ 198 (290)
.++|..++.++.. +| .-...|-.+-+++...+.|+.|+..+++-+- ++ .+....++.-|.+|..+++|++|..
T Consensus 14 e~ai~~~~~a~~~-~p---~~~~~~~~la~~y~~~~~~~~A~~~~~~al~-~~--p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 14 ERYIASVQGSTPS-PR---QKSIKGFYFAKLYYEAKEYDLAKKYICTYIN-VQ--ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHSCS-HH---HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhccc-Cc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC--CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 3456666665432 22 1234566788999999999999999988763 32 1346678889999999999999999
Q ss_pred HHHHhhc-cCcc
Q 022902 199 LLHNVVT-APMS 209 (290)
Q Consensus 199 ~l~~ais-~P~~ 209 (290)
+|+.++. -|..
T Consensus 87 ~~~~al~~~p~~ 98 (150)
T 4ga2_A 87 CYRRSVELNPTQ 98 (150)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHHhCCCC
Confidence 9999998 7874
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=93.47 E-value=0.28 Score=35.59 Aligned_cols=84 Identities=8% Similarity=0.018 Sum_probs=59.6
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHH
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR 194 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~ 194 (290)
.+....++..+..++.. +|.. ...+..+...+...+.++.|...+++-+-.-+ +....++.-|.++...++|+
T Consensus 14 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 86 (136)
T 2fo7_A 14 QGDYDEAIEYYQKALEL-DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---RSAEAWYNLGNAYYKQGDYD 86 (136)
T ss_dssp HTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTTTCHH
T ss_pred cCcHHHHHHHHHHHHHc-CCcc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC---CchHHHHHHHHHHHHhcCHH
Confidence 35555677777777654 3332 34556678888889999999988887553222 12345566788999999999
Q ss_pred HHHHHHHHhhc
Q 022902 195 KALELLHNVVT 205 (290)
Q Consensus 195 ~A~~~l~~ais 205 (290)
+|..+|+.++.
T Consensus 87 ~A~~~~~~~~~ 97 (136)
T 2fo7_A 87 EAIEYYQKALE 97 (136)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999886
No 98
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.46 E-value=0.13 Score=38.77 Aligned_cols=70 Identities=9% Similarity=-0.035 Sum_probs=56.9
Q ss_pred hhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 140 Ts~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
...+..+...+...+.|+.|++.+++-+-.-+...+....++.-|.+|..+++|++|..+|+.++. .|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 456677888999999999999999887643333334578888899999999999999999999997 5654
No 99
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=93.42 E-value=0.11 Score=45.51 Aligned_cols=99 Identities=8% Similarity=-0.005 Sum_probs=72.5
Q ss_pred HHHhHhhhccccccHHHHHHHHHhhC--CCCCCch-hhHHHHHHHHHHccCchhhhhcccccccccC---CchhHHHHHH
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKIQ--SSTEHLT-TLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---LPRDFFLYCY 181 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~~--~~~~~LT-s~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~---~~~~~l~Y~y 181 (290)
++......++...++..+..|+.... +....+. .++..+-..+...+.|+.|+..+++-+--.. ........++
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33344455777778999999985432 2222222 6778889999999999999999988653111 1223467789
Q ss_pred HHHHHHHHHhcHHHH-HHHHHHhhcc
Q 022902 182 YGGMIFIGQKRFRKA-LELLHNVVTA 206 (290)
Q Consensus 182 ygG~i~~~~k~~~~A-~~~l~~ais~ 206 (290)
.-|.+|..++++++| .++|+.|+..
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999999999999999 8999999863
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=93.40 E-value=0.3 Score=35.39 Aligned_cols=87 Identities=9% Similarity=0.030 Sum_probs=64.6
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..+....++..+..++.. .|.. ...+..+...+...+.++.|...+++-+-..+. ....++.-|.++..++++
T Consensus 47 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~ 119 (136)
T 2fo7_A 47 KQGDYDEAIEYYQKALEL-DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDY 119 (136)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCH
T ss_pred HhcCHHHHHHHHHHHHHH-CCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHccH
Confidence 345566678888887764 4332 345677888999999999999999876532221 234566789999999999
Q ss_pred HHHHHHHHHhhc-cC
Q 022902 194 RKALELLHNVVT-AP 207 (290)
Q Consensus 194 ~~A~~~l~~ais-~P 207 (290)
++|..+|+.++. .|
T Consensus 120 ~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 120 DEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCC
Confidence 999999999986 44
No 101
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=93.37 E-value=0.86 Score=40.12 Aligned_cols=96 Identities=11% Similarity=0.091 Sum_probs=69.2
Q ss_pred HHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHH
Q 022902 109 KDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFI 188 (290)
Q Consensus 109 ~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~ 188 (290)
+......+.+..++..++.++.. +|.. ..+.+...++.+....+.|+.|+.++++-+-..| +....++.-|+++.
T Consensus 137 ~~~~~~~g~~~~A~~~l~~~~~~-~p~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p---~~~~~~~~la~~~~ 211 (291)
T 3mkr_A 137 VQILLKLDRLDLARKELKKMQDQ-DEDA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS---PTLLLLNGQAACHM 211 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CTTC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC---CCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh-CcCc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHH
Confidence 34455667777888999888765 5543 2333333444555566889999999988664323 23556778899999
Q ss_pred HHhcHHHHHHHHHHhhc-cCcc
Q 022902 189 GQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 189 ~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.+++|++|...|+.++. -|..
T Consensus 212 ~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 212 AQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999997 6764
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=93.19 E-value=0.15 Score=42.34 Aligned_cols=66 Identities=9% Similarity=0.075 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 141 s~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.++..+-..+...+.|+.|+..+++-+- ++ + +....++.-|.++..+++|++|..+|+.++. -|..
T Consensus 55 ~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 55 KLATELALAYKKNRNYDKAYLFYKELLQ-KA-P-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-HC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 3444588899999999999999988663 22 1 3457788889999999999999999999998 7875
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=93.10 E-value=0.17 Score=40.76 Aligned_cols=67 Identities=7% Similarity=-0.089 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCccc
Q 022902 141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (290)
Q Consensus 141 s~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~~ 210 (290)
..+..+-..+...+.|+.|+..+++-+- +++ +...+++.-|.+|..+++|++|.++|+.++. -|...
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~-~~P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCI-YDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 3456677888999999999999988763 222 3466888899999999999999999999998 78753
No 104
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.07 E-value=0.41 Score=41.91 Aligned_cols=90 Identities=9% Similarity=0.032 Sum_probs=70.8
Q ss_pred HhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHh
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK 191 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k 191 (290)
....++...++..+..|+.. +|.. ...+..+...+...+.|+.|+..+++-+- ++ .+....+|.-|.+|..++
T Consensus 14 ~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~--p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 14 LFVGRKYPEAAACYGRAITR-NPLV---AVYYTNRALCYLKMQQPEQALADCRRALE-LD--GQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTT-SC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hC--CCCHHHHHHHHHHHHHcC
Confidence 33456666688888888875 5433 56778888999999999999999988763 22 234567788899999999
Q ss_pred cHHHHHHHHHHhhc-cCc
Q 022902 192 RFRKALELLHNVVT-APM 208 (290)
Q Consensus 192 ~~~~A~~~l~~ais-~P~ 208 (290)
+|++|...|+.++. .|.
T Consensus 87 ~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 87 SYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcc
Confidence 99999999999997 675
No 105
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=93.04 E-value=0.56 Score=38.37 Aligned_cols=92 Identities=14% Similarity=0.023 Sum_probs=68.6
Q ss_pred hHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHH
Q 022902 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (290)
Q Consensus 111 ~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~ 190 (290)
.....+....++..+..++... |.. ...+..+...+...+.++.|+..+++-+-..+ +....++.-|.++...
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE---NDTEARFQFGMCLANE 172 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHc
Confidence 3344566777888888887753 322 34567888899999999999999888653222 2345677889999999
Q ss_pred hcHHHHHHHHHHhhc-cCcc
Q 022902 191 KRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 191 k~~~~A~~~l~~ais-~P~~ 209 (290)
++|++|..+|+.++. .|..
T Consensus 173 ~~~~~A~~~~~~~~~~~~~~ 192 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQDPGH 192 (243)
T ss_dssp TCCHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHhCccc
Confidence 999999999999997 5653
No 106
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.97 E-value=1.3 Score=38.63 Aligned_cols=102 Identities=11% Similarity=-0.048 Sum_probs=73.3
Q ss_pred HHHhHhhh-ccccccHHHHHHHHHhhCCCCC--CchhhHHHHHHHHHHccCchhhhhcccccccccCCch----hHHHHH
Q 022902 108 YKDQVLLL-EAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPR----DFFLYC 180 (290)
Q Consensus 108 ~~~~~~~~-~~p~~~i~~L~~Ai~r~~~~~~--~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~----~~l~Y~ 180 (290)
++...... +.+..++..++.|+......+. .....+..+-..+...+.|+.|+..+++-+-.-+... ....++
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 34444453 7788899999999987653332 2245677888899999999999999988653222211 334577
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 181 YYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 181 yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
+-.|.++..++++++|..+|+.++. -|..
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 7889999999999999999999998 6764
No 107
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=92.97 E-value=0.7 Score=38.53 Aligned_cols=90 Identities=10% Similarity=-0.024 Sum_probs=56.6
Q ss_pred hhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhc
Q 022902 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (290)
Q Consensus 113 ~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~ 192 (290)
...+....++..++.++.. +|.. ...+..+...+...+.|+.|+..+++-+-.-+ +....++.-|.+|..+++
T Consensus 54 ~~~~~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~ 126 (275)
T 1xnf_A 54 DSLGLRALARNDFSQALAI-RPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP---TYNYAHLNRGIALYYGGR 126 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHc-CCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc---cccHHHHHHHHHHHHhcc
Confidence 3445555667777777654 3322 34566677777777777777777776543211 123455666777777777
Q ss_pred HHHHHHHHHHhhc-cCcc
Q 022902 193 FRKALELLHNVVT-APMS 209 (290)
Q Consensus 193 ~~~A~~~l~~ais-~P~~ 209 (290)
|++|..+|+.++. .|..
T Consensus 127 ~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 127 DKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 7777777777776 5553
No 108
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=92.90 E-value=0.18 Score=38.67 Aligned_cols=65 Identities=8% Similarity=0.178 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 142 ~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.|..+=..+...+.|+.|+...++-|- +++ +...+++.-|.+|..+++|++|.++|+.+|. .|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~-~~p--~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE-LDP--SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC--CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 345566678899999999999998763 332 2356788899999999999999999999997 5653
No 109
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=92.75 E-value=0.37 Score=45.95 Aligned_cols=89 Identities=18% Similarity=0.162 Sum_probs=70.2
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHH
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR 194 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~ 194 (290)
.++...++..++.|+.. +|.. ...+..+...+...+.|+.|+..+++.+- +++ +....++.-|.+|..+++|+
T Consensus 19 ~g~~~~A~~~~~~Al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l~p--~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 19 AKDYENAIKFYSQAIEL-NPSN---AIYYGNRSLAYLRTECYGYALGDATRAIE-LDK--KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-SCT--TCHHHHHHHHHHHHHHTCHH
T ss_pred hCCHHHHHHHHHHHHHh-CCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCC--CCHHHHHHHHHHHHHcCCHH
Confidence 34455578888888765 5433 56778899999999999999999988763 221 34567788899999999999
Q ss_pred HHHHHHHHhhc-cCccc
Q 022902 195 KALELLHNVVT-APMSS 210 (290)
Q Consensus 195 ~A~~~l~~ais-~P~~~ 210 (290)
+|..+|+.++. .|...
T Consensus 92 eA~~~~~~al~~~p~~~ 108 (477)
T 1wao_1 92 AALRDYETVVKVKPHDK 108 (477)
T ss_dssp HHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHHhCCCCH
Confidence 99999999998 78754
No 110
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=92.73 E-value=0.21 Score=38.64 Aligned_cols=66 Identities=8% Similarity=-0.141 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 141 s~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
..+..+...++..+.|+.|+..+++-+- .++ +...+++.-|.+|..+++|++|..+|+.++. .|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM-LDH--YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH-hCC--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 3455677888999999999999987653 221 3456778899999999999999999999998 6765
No 111
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=92.72 E-value=0.21 Score=39.42 Aligned_cols=68 Identities=6% Similarity=-0.121 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCccc
Q 022902 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (290)
Q Consensus 140 Ts~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~~ 210 (290)
...+..+...++..+.|+.|+..+++-+- .++ +...+++.-|.++..+++|++|..+|+.++. .|...
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 89 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCV-LDH--YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP 89 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 44566778889999999999999988653 221 2356678889999999999999999999998 67753
No 112
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=92.71 E-value=0.52 Score=41.34 Aligned_cols=94 Identities=12% Similarity=0.038 Sum_probs=72.1
Q ss_pred HHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHH
Q 022902 109 KDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFI 188 (290)
Q Consensus 109 ~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~ 188 (290)
+......+....++..+..++.. +|.. ...+..+...+...+.++.|+..+++-+-. + .+....++.-|.+|.
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSV-RPND---YLLWNKLGATLANGNQSEEAVAAYRRALEL-Q--PGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--TTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-CcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C--CCcHHHHHHHHHHHH
Confidence 33344556677788888888865 4433 456788899999999999999999886532 2 133567788999999
Q ss_pred HHhcHHHHHHHHHHhhc-cCcc
Q 022902 189 GQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 189 ~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.+++|++|..+|+.++. .|..
T Consensus 297 ~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC
T ss_pred HCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999997 5653
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=92.65 E-value=0.55 Score=41.13 Aligned_cols=94 Identities=11% Similarity=-0.033 Sum_probs=62.4
Q ss_pred hHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCC------------------
Q 022902 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL------------------ 172 (290)
Q Consensus 111 ~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~------------------ 172 (290)
.+...+....++..++.++.. +|.. ...+..+.+.++..+.++.|...+++-+-.-+.
T Consensus 126 ~~~~~g~~~~A~~~~~~al~~-~P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 126 QLMQESNYTDALPLLXDAWQL-SNQN---GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAAD 201 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-TTSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTS
T ss_pred HHHhCCCHHHHHHHHHHHHHh-CCcc---hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhccc
Confidence 344557777788888888765 5544 467889999999999999999999875432111
Q ss_pred -------------chhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 173 -------------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 173 -------------~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
.-+....+|.-|.++..+++|++|...|+.++. .|.
T Consensus 202 ~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 202 TPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 112334555556666666666666666666665 454
No 114
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=92.61 E-value=0.21 Score=41.00 Aligned_cols=94 Identities=17% Similarity=0.138 Sum_probs=72.1
Q ss_pred HHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHH
Q 022902 109 KDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFI 188 (290)
Q Consensus 109 ~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~ 188 (290)
+......++...++..+..++.. +|.. ...+..+...+...+.++.|+..+++-+-..+ +....++.-|.+|.
T Consensus 132 a~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~ 204 (243)
T 2q7f_A 132 GTVLVKLEQPKLALPYLQRAVEL-NEND---TEARFQFGMCLANEGMLDEALSQFAAVTEQDP---GHADAFYNAGVTYA 204 (243)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh-CCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHH
Confidence 33444567777788889888865 4332 44667888999999999999999987653222 23456788999999
Q ss_pred HHhcHHHHHHHHHHhhc-cCcc
Q 022902 189 GQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 189 ~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.++++++|..+|+.++. .|..
T Consensus 205 ~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 205 YKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HTTCTTHHHHHHHHHHHHCTTC
T ss_pred HccCHHHHHHHHHHHHccCcch
Confidence 99999999999999997 6764
No 115
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=92.53 E-value=0.21 Score=38.03 Aligned_cols=65 Identities=11% Similarity=-0.143 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 142 ~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.+-.+-..++..+.++.|+..+++-+-.-| +....++..|.++..+++|++|..+|+.++. .|..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 84 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP---EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 455667888999999999999988764222 3466778999999999999999999999998 6864
No 116
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=92.47 E-value=0.22 Score=37.21 Aligned_cols=65 Identities=6% Similarity=-0.095 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 142 ~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.+...-..++..+.|+.|+..+++-+-.-+ +....++.-|.+|..+++|++|..+|+.++. -|..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP---EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 345566788999999999999988763222 2357788899999999999999999999998 6764
No 117
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=92.47 E-value=1.1 Score=42.49 Aligned_cols=92 Identities=3% Similarity=-0.071 Sum_probs=73.7
Q ss_pred HhHhhhccc-cccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHH
Q 022902 110 DQVLLLEAP-IRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFI 188 (290)
Q Consensus 110 ~~~~~~~~p-~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~ 188 (290)
......+.. ..++..++.|+.. +|.. ...+..+-..+...+.|+.|+..+++-+- +++. ...++.-|.++.
T Consensus 110 ~~~~~~g~~~~~A~~~~~~al~~-~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~---~~~~~~lg~~~~ 181 (474)
T 4abn_A 110 KALNVTPDYSPEAEVLLSKAVKL-EPEL---VEAWNQLGEVYWKKGDVTSAHTCFSGALT-HCKN---KVSLQNLSMVLR 181 (474)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHT-TCCC---HHHHHHHHHHHT
T ss_pred HHHHhccccHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCC---HHHHHHHHHHHH
Confidence 333445666 7789999998864 5543 56788999999999999999999988763 3322 388889999999
Q ss_pred HH---------hcHHHHHHHHHHhhc-cCcc
Q 022902 189 GQ---------KRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 189 ~~---------k~~~~A~~~l~~ais-~P~~ 209 (290)
.+ ++|++|..+|+.++. .|..
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 212 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD 212 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 99 999999999999997 7875
No 118
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=92.43 E-value=0.3 Score=45.48 Aligned_cols=91 Identities=9% Similarity=0.015 Sum_probs=52.3
Q ss_pred Hhhhcc-ccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHH
Q 022902 112 VLLLEA-PIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (290)
Q Consensus 112 ~~~~~~-p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~ 190 (290)
+...++ ...++..+..|+. ++|.. ...|..+-.++...+.|+.|+..+++-|- ++ + +...-+++.|.++..+
T Consensus 141 l~~~g~d~~eAl~~~~~al~-l~P~~---~~a~~~~g~~~~~~g~~~eAl~~~~kal~-ld-P-~~~~a~~~lg~~~~~~ 213 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIE-EQPKN---YQVWHHRRVLVEWLRDPSQELEFIADILN-QD-A-KNYHAWQHRQWVIQEF 213 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHHHH-HC-T-TCHHHHHHHHHHHHHH
T ss_pred HHHcccCHHHHHHHHHHHHH-HCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHH-hC-c-cCHHHHHHHHHHHHHc
Confidence 334443 4455666666554 34432 33445555555666666666666666542 22 1 2334456677777777
Q ss_pred hcHHHHHHHHHHhhc-cCcc
Q 022902 191 KRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 191 k~~~~A~~~l~~ais-~P~~ 209 (290)
++|++|+.+|+.+|. -|..
T Consensus 214 g~~~eAl~~~~~al~l~P~~ 233 (382)
T 2h6f_A 214 KLWDNELQYVDQLLKEDVRN 233 (382)
T ss_dssp TCCTTHHHHHHHHHHHCTTC
T ss_pred CChHHHHHHHHHHHHhCCCC
Confidence 777777777777776 5653
No 119
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=92.42 E-value=4.1 Score=34.51 Aligned_cols=84 Identities=7% Similarity=-0.045 Sum_probs=50.3
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHH
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR 194 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~ 194 (290)
.+....++..++.++...+. . ...+..+...+...+.++.|...+++-+-..+.. ...++.-|.++..+++|+
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~~~~~ 210 (330)
T 3hym_B 138 ESEHDQAMAAYFTAAQLMKG-C---HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED---PFVMHEVGVVAFQNGEWK 210 (330)
T ss_dssp HTCHHHHHHHHHHHHHHTTT-C---SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---HHHHHHHHHHHHHTTCHH
T ss_pred ccCHHHHHHHHHHHHHhccc-c---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcccHH
Confidence 35555566777776654322 2 2234456677777777777777776654322222 133445667777777777
Q ss_pred HHHHHHHHhhc
Q 022902 195 KALELLHNVVT 205 (290)
Q Consensus 195 ~A~~~l~~ais 205 (290)
+|..+|+.++.
T Consensus 211 ~A~~~~~~a~~ 221 (330)
T 3hym_B 211 TAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777776
No 120
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=92.25 E-value=0.24 Score=37.13 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=55.2
Q ss_pred hhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 140 Ts~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
...+..+-..++..+.|+.|+..+.+-+-.-+ +....++.-|.++..+++|++|..+|+.++. .|..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc---CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 45677888899999999999999988654222 2356788889999999999999999999998 6763
No 121
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=92.22 E-value=0.61 Score=41.21 Aligned_cols=93 Identities=11% Similarity=0.049 Sum_probs=72.5
Q ss_pred HHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHH
Q 022902 109 KDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFI 188 (290)
Q Consensus 109 ~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~ 188 (290)
+......+....++..++.++.. +|.. ...+..+...+...+.|+.|+..+++-+-.-+ +....++.-|.+|.
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV-RPED---YSLWNRLGATLANGDRSEEAVEAYTRALEIQP---GFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CchHHHHHHHHHHH
Confidence 33344556777788889988875 4433 45778899999999999999999988653222 23667788899999
Q ss_pred HHhcHHHHHHHHHHhhc-cCc
Q 022902 189 GQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 189 ~~k~~~~A~~~l~~ais-~P~ 208 (290)
.+++|++|..+|+.++. .|.
T Consensus 293 ~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHTCCHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999997 565
No 122
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=92.19 E-value=0.2 Score=42.04 Aligned_cols=87 Identities=14% Similarity=0.023 Sum_probs=64.3
Q ss_pred ccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHH
Q 022902 120 RGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALEL 199 (290)
Q Consensus 120 ~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~ 199 (290)
.++..+..++.....++..-...+..+...+...+.|+.|+..+++-+-.-+ +....++..|.+|..+++|++|..+
T Consensus 23 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~~ 99 (275)
T 1xnf_A 23 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP---DMPEVFNYLGIYLTQAGNFDAAYEA 99 (275)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHccCHHHHHHH
Confidence 3566666666553222223456778888999999999999999988653222 2345677889999999999999999
Q ss_pred HHHhhc-cCcc
Q 022902 200 LHNVVT-APMS 209 (290)
Q Consensus 200 l~~ais-~P~~ 209 (290)
|+.++. .|..
T Consensus 100 ~~~al~~~~~~ 110 (275)
T 1xnf_A 100 FDSVLELDPTY 110 (275)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHhcCccc
Confidence 999998 6764
No 123
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=92.17 E-value=0.23 Score=39.15 Aligned_cols=67 Identities=10% Similarity=0.031 Sum_probs=55.3
Q ss_pred hhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 140 Ts~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
...+..+-..++..+.|+.|+..+++-+-.-+ +...+++.-|.+|..+++|++|..+|+.++. .|..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP---ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 34567788899999999999999988763222 2467788899999999999999999999998 6764
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=92.15 E-value=0.39 Score=41.81 Aligned_cols=92 Identities=7% Similarity=0.022 Sum_probs=69.7
Q ss_pred hhccccccHHHHHHHHHhhCCCCCC--chhhHHHHHHHHHHccCchhhhhccccccccc----CCchhHHHHHHHHHHHH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEH--LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI----NLPRDFFLYCYYGGMIF 187 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~--LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i----~~~~~~l~Y~yygG~i~ 187 (290)
..++...++..+..|+......... ...++..+-..+...+.|+.|+...++-+-.. .........++.-|.+|
T Consensus 127 ~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y 206 (293)
T 3u3w_A 127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 4445667899999998843333322 23356778888899999999999988865311 12456677889999999
Q ss_pred HHHhcHHHHHHHHHHhhc
Q 022902 188 IGQKRFRKALELLHNVVT 205 (290)
Q Consensus 188 ~~~k~~~~A~~~l~~ais 205 (290)
..+++|++|.++++.++.
T Consensus 207 ~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 207 YLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 999999999999999886
No 125
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=92.14 E-value=0.5 Score=34.29 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 142 ~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
.+..+...+...+.|+.|...+++-+-..+ +....++.-|.++..+++|++|..+|+.++. .|.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP---TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence 456677888899999999999988653222 2356778889999999999999999999997 565
No 126
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=92.09 E-value=0.38 Score=45.57 Aligned_cols=90 Identities=11% Similarity=-0.040 Sum_probs=68.6
Q ss_pred ccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHc--------cCchhhhhcccccccccCCchhHHHHHHHHHHHH
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLA--------KCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIF 187 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~a--------k~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~ 187 (290)
+....++..++.|+.. +|.. ...+..+-..+... +.|+.|+..+++-+---+...+....++.-|.+|
T Consensus 193 g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~ 268 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQM-DVLD---GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLH 268 (474)
T ss_dssp HHHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHH
Confidence 5566688888888864 5543 45667777777777 8899999998886632111225678888999999
Q ss_pred HHHhcHHHHHHHHHHhhc-cCcc
Q 022902 188 IGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 188 ~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
..+++|++|.++|+.++. .|..
T Consensus 269 ~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 269 KYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999997 6764
No 127
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=92.06 E-value=0.22 Score=41.70 Aligned_cols=92 Identities=5% Similarity=-0.082 Sum_probs=62.6
Q ss_pred ccccccHHHHHHHHHhhCCCCCCch-------------hhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHH
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLT-------------TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYY 182 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LT-------------s~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yy 182 (290)
++...++..++.++.+++.++.... ..+..+.+..+..+.|+.|+..+++-+-..|.....-.-++.
T Consensus 110 ~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 189 (225)
T 2yhc_A 110 QQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPL 189 (225)
T ss_dssp HHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHH
Confidence 4455678888888877654432111 122345566778888888888888766555544444566788
Q ss_pred HHHHHHHHhcHHHHHHHHHHhhccC
Q 022902 183 GGMIFIGQKRFRKALELLHNVVTAP 207 (290)
Q Consensus 183 gG~i~~~~k~~~~A~~~l~~ais~P 207 (290)
-|.+|..++++++|...|+.+..-|
T Consensus 190 l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 190 MENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 8888888888888888888887633
No 128
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=92.05 E-value=4.6 Score=36.77 Aligned_cols=157 Identities=7% Similarity=-0.048 Sum_probs=97.6
Q ss_pred HHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHH
Q 022902 109 KDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFI 188 (290)
Q Consensus 109 ~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~ 188 (290)
+......+....++..+..++.. +|. ...+..+...+...+.++.|+..+++-+-.-+. ....++.-|.++.
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIEL-FPR----VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN---NSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH-CCC----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT---CTHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh-Ccc----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC---CHHHHHHHHHHHH
Confidence 33444556777788888888764 443 777888999999999999999999886532222 2345678899999
Q ss_pred HHhcHHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhh---hhcchhHHHHHHHh-
Q 022902 189 GQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNL---KNFSQPYMELVNTY- 263 (290)
Q Consensus 189 ~~k~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~---k~~~~pY~~la~af- 263 (290)
.+++|++|..+|+.++. .|.... ++..+.. .+...|+.. . .-....+.+ ......|..++.++
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~-~~~~~~~~~-~----A~~~~~~~~~~~~~~~~~~~~la~~~~ 383 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIF------PYIQLAC-LAYRENKFD-D----CETLFSEAKRKFPEAPEVPNFFAEILT 383 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSH------HHHHHHH-HTTTTTCHH-H----HHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHH------HHHHHHH-HHHHcCCHH-H----HHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 99999999999999997 666422 1111111 112223322 1 011111111 12345677777776
Q ss_pred cCCChHHHHHHHHHhHHhhhcc
Q 022902 264 NTGKIVELETYVQTNREKFESV 285 (290)
Q Consensus 264 ~~~~~~~l~~~~~~~~~~f~~D 285 (290)
..|+.++-....++..+....+
T Consensus 384 ~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 384 DKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTS
T ss_pred HCCCHHHHHHHHHHHHHhhhcc
Confidence 5677777666666554444333
No 129
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=91.97 E-value=3.4 Score=36.06 Aligned_cols=101 Identities=8% Similarity=0.023 Sum_probs=75.1
Q ss_pred HHHhHhhhccccccHHHHHHHHHhhCCCCC--CchhhHHHHHHHHHHccCchhhhhcccccccccC---CchhHHHHHHH
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---LPRDFFLYCYY 182 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~--~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~---~~~~~l~Y~yy 182 (290)
++..... +.+..++..++.|+..+...+. .....+..+-..+...+.|+.|+..+++-+--.+ .......+++-
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 3333344 7777899999999987654332 2345677888999999999999999988653221 12234567888
Q ss_pred HHHHHHHHhcHHHHHHHHHHhhccCcc
Q 022902 183 GGMIFIGQKRFRKALELLHNVVTAPMS 209 (290)
Q Consensus 183 gG~i~~~~k~~~~A~~~l~~ais~P~~ 209 (290)
.|.++..+++|++|..+|+.++..|..
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al~~p~~ 227 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESYSIPGF 227 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHhCCCCC
Confidence 899999999999999999999965754
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=91.81 E-value=0.35 Score=35.49 Aligned_cols=70 Identities=11% Similarity=0.067 Sum_probs=56.4
Q ss_pred CCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 137 EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 137 ~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
..-...+..+...+...+.|+.|...+++-+-.-+ +....++.-|.++..+++|++|..+|+.++. .|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 83 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP---KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 83 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT---TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 33456678888999999999999999988663222 2356778889999999999999999999997 5653
No 131
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=91.78 E-value=1.4 Score=38.52 Aligned_cols=155 Identities=12% Similarity=0.039 Sum_probs=96.2
Q ss_pred hhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHH---
Q 022902 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG--- 189 (290)
Q Consensus 113 ~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~--- 189 (290)
...+....+....+.|+. .+|.. .+.++..+.......+.++.|..++++-+-.-+.. +..|.|..++.
T Consensus 110 ~~~~~~~~A~~~~~~al~-~~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLA-IEDID--PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR-----HHVYVTAALMEYYC 181 (308)
T ss_dssp HHTTCHHHHHHHHHHHHT-SSSSC--THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC-----THHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHHh-ccccC--ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHH
Confidence 344566667888888876 45533 23378888999999999999999998876422222 22233555554
Q ss_pred HhcHHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhhh-------cchhHHHHHH
Q 022902 190 QKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN-------FSQPYMELVN 261 (290)
Q Consensus 190 ~k~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k~-------~~~pY~~la~ 261 (290)
++++++|...|+.++. .|.. .+++..++-. ++..|+.. . .-....|.++. ...-+..++.
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~-~~~~g~~~-~----A~~~~~~al~~~~l~p~~~~~l~~~~~~ 249 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDI------PEYVLAYIDY-LSHLNEDN-N----TRVLFERVLTSGSLPPEKSGEIWARFLA 249 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHH-HHTTCCHH-H----HHHHHHHHHHSSSSCGGGCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHH-HHHCCCHH-H----HHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 6999999999999997 6763 2334333322 23345543 2 12233344432 1123444444
Q ss_pred Hh-cCCChHHHHHHHHHhHHhhhcccc
Q 022902 262 TY-NTGKIVELETYVQTNREKFESVSY 287 (290)
Q Consensus 262 af-~~~~~~~l~~~~~~~~~~f~~D~N 287 (290)
.. ..|+.++...+.++..+.+.+|.+
T Consensus 250 ~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 250 FESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 43 468999988888888888876543
No 132
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=91.63 E-value=0.84 Score=38.96 Aligned_cols=87 Identities=7% Similarity=0.000 Sum_probs=42.3
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHH
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR 194 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~ 194 (290)
.+....++..++.++.. +|.. ...+..+...+...+.++.|+..+++-+-.-+ +....++.-|.+|..+++|+
T Consensus 185 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVEL-RPDD---AQLWNKLGATLANGNRPQEALDAYNRALDINP---GYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHH
T ss_pred hccHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhccHH
Confidence 34444455555555443 2221 23445555555555666666555554332111 12233445555666666666
Q ss_pred HHHHHHHHhhc-cCc
Q 022902 195 KALELLHNVVT-APM 208 (290)
Q Consensus 195 ~A~~~l~~ais-~P~ 208 (290)
+|..+|+.++. .|.
T Consensus 258 ~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCc
Confidence 66666666554 444
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=91.56 E-value=0.21 Score=45.12 Aligned_cols=95 Identities=11% Similarity=-0.087 Sum_probs=64.2
Q ss_pred HHHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHH
Q 022902 107 RYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMI 186 (290)
Q Consensus 107 ~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i 186 (290)
.++..+.+.+....+...+...+.. .+... .+-.+..+|+.++.|+.|+..++..+. .+.+...-.-+||.|++
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA---GSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGK-WPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT---TCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGG-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc---CCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhc-cCCcccHHHHHHHHHHH
Confidence 3444455555555555555444321 23333 556666799999999999999985542 22121123467899999
Q ss_pred HHHHhcHHHHHHHHHHhhccC
Q 022902 187 FIGQKRFRKALELLHNVVTAP 207 (290)
Q Consensus 187 ~~~~k~~~~A~~~l~~ais~P 207 (290)
+..++++++|+.+|++++.-|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTST
T ss_pred HHHCCCHHHHHHHHHHHhcCC
Confidence 999999999999999999655
No 134
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=91.56 E-value=0.28 Score=34.98 Aligned_cols=64 Identities=14% Similarity=0.007 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 142 ~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
.+..+...+...+.|+.|...+++-+-..+ +....++.-|.++..+++|++|..+++.++. .|.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP---HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 456677888999999999999988653222 2356778889999999999999999999997 565
No 135
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=91.53 E-value=0.31 Score=37.34 Aligned_cols=67 Identities=6% Similarity=0.004 Sum_probs=54.6
Q ss_pred hhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 140 Ts~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.-.|...=..++..+.|+.|+...++-|- +++ +....++.-|.+|..+++|++|.+.|+.||. -|..
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~-~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 80 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVK-RDP--ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC--CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence 44566777789999999999999988763 322 2356778899999999999999999999998 5764
No 136
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=91.45 E-value=0.71 Score=36.79 Aligned_cols=124 Identities=18% Similarity=0.113 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHhcCChhhhh--------hhhHhHHHHHHHHHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHH
Q 022902 76 NTLVPIIARFITSCSAEQIR--------YVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFL 147 (290)
Q Consensus 76 ~~l~~~v~~fl~~f~~~Qlr--------~a~~~~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll 147 (290)
+..+.....++..-+..+.. .-|+. ......++......+++..++..++.++.. +| . ...+....
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-~p-~---~~~~~~~~ 80 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR-GDVKLAKADCLLETKQFELAQELLATIPLE-YQ-D---NSYKSLIA 80 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS-HHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-GC-C---HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-cC-C---hHHHHHHH
Confidence 44556666666665554432 22222 223334555556667776677777766543 33 2 12233322
Q ss_pred HHHHH-ccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 148 QLCLL-AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 148 ~lcL~-ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
.+.+. ......|+..+++-+- .+ + +....+|.-|.++..+++|++|..+|+.++. .|.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~-~~-P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELA-AN-P-DNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH-HS-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhhcccchHHHHHHHHHH-hC-C-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 23221 1223334555554432 11 1 2356677889999999999999999999997 675
No 137
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.02 E-value=0.73 Score=37.79 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=41.9
Q ss_pred CchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 155 CYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 155 ~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.++.|..+++.-+- .+.+.+.-.|+||-|..|..+++|++|..+++.++. -|.+
T Consensus 50 ~~~~gI~lLe~ll~-~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 50 DIRKGIVLLEELLP-KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHh-cCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 45577777766432 222335677889999999999999999999999998 7864
No 138
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=90.84 E-value=0.33 Score=39.40 Aligned_cols=86 Identities=7% Similarity=0.097 Sum_probs=64.9
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..+....++..+..++ +++ ...+..+-..+...+.|+.|+..+++-+-. + .+....++.-|.+|..+++|
T Consensus 18 ~~~~~~~A~~~~~~a~---~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 18 DKKDWKGALDAFSAVQ---DPH----SRICFNIGCMYTILKNMTEAEKAFTRSINR-D--KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HTTCHHHHHHHHHTSS---SCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--TTCHHHHHHHHHHHHHTTCH
T ss_pred HhCCHHHHHHHHHHHc---CCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C--ccchHHHHHHHHHHHHcccH
Confidence 3455555666666663 332 357788888999999999999999886532 2 12356678889999999999
Q ss_pred HHHHHHHHHhhc-cCcc
Q 022902 194 RKALELLHNVVT-APMS 209 (290)
Q Consensus 194 ~~A~~~l~~ais-~P~~ 209 (290)
++|..+|+.++. .|..
T Consensus 88 ~~A~~~~~~al~~~~~~ 104 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGN 104 (213)
T ss_dssp HHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 999999999997 6653
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=90.55 E-value=0.16 Score=36.02 Aligned_cols=64 Identities=16% Similarity=0.079 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 142 ~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
.+..+...+...+.|+.|...+++-+-.-+ +....++.-|.++..+++|++|..+|+.++. .|.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP---EESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 345667788889999999999888653222 2245677889999999999999999999997 454
No 140
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=90.52 E-value=0.53 Score=40.99 Aligned_cols=125 Identities=10% Similarity=0.040 Sum_probs=82.1
Q ss_pred HHHHHHccCchhhhhccccc--------ccccCC--c--hhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc--ch
Q 022902 147 LQLCLLAKCYKAGLSVLEDD--------IYEINL--P--RDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS--SI 211 (290)
Q Consensus 147 l~lcL~ak~y~~Al~vl~~~--------i~~i~~--~--~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~--~~ 211 (290)
++..+..+.|+.+.++|.+- ++ .|+ . ..+.++.|+-|-+.+...+..++++-+...+. .|.. ..
T Consensus 14 L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~-~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~ 92 (229)
T 4b0z_A 14 LADLYDRKDWNACKKELLKLKVELAKQNLF-VPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVP 92 (229)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCS-SCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcCCC-CCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCC
Confidence 45567788999998888762 22 121 1 24678999999999998888888777777775 6654 22
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHh-----hh--hcchhHHHHHHHhcCCChHHHHHHHHHh
Q 022902 212 NAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRN-----LK--NFSQPYMELVNTYNTGKIVELETYVQTN 278 (290)
Q Consensus 212 s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~-----~k--~~~~pY~~la~af~~~~~~~l~~~~~~~ 278 (290)
|.-+.| .-++-|+.+|..|+++ ++-. ...+. ++ +..+++.++..++..||..+|.+..++.
T Consensus 93 s~~~~e-~~~~~LL~lL~~~~~~-ef~~----~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~ 160 (229)
T 4b0z_A 93 SSRMGL-VTGLNLLYLLSENRIA-EFHT----ALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSC 160 (229)
T ss_dssp CTTHHH-HHHHHHHHHHHTTCHH-HHHH----HHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred CccHHH-HHHHHHHHHHHcCCch-HHHH----HHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcC
Confidence 444555 3445566678889887 5311 11111 11 1245667788899999999998887764
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=90.41 E-value=0.64 Score=33.60 Aligned_cols=66 Identities=8% Similarity=-0.005 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 141 s~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
..+..+...+...+.|+.|...+++-+-.-+ +....++.-|.++..+++|++|..+++.++. .|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNP---ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 4566777888999999999999888653222 2356778889999999999999999999997 6664
No 142
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=90.21 E-value=1.2 Score=36.69 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=68.0
Q ss_pred hhccccccHHHHHHHHHhhCCCC---C--Cc----hhhHHHHHHHHHHccCchhhhhccccccccc------CCchhHHH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSST---E--HL----TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI------NLPRDFFL 178 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~---~--~L----Ts~H~~ll~lcL~ak~y~~Al~vl~~~i~~i------~~~~~~l~ 178 (290)
..+...-++...+.|+. ++|+. . .. ...|..+-.....-+.|+.|+...++-|--+ + + +...
T Consensus 23 ~~g~~eeAi~~Y~kAL~-l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-p-d~~~ 99 (159)
T 2hr2_A 23 VAGEYDEAAANCRRAME-ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-Q-DEGK 99 (159)
T ss_dssp HHTCHHHHHHHHHHHHH-HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-S-THHH
T ss_pred HCCCHHHHHHHHHHHHh-hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-C-chHH
Confidence 44555557788888875 45541 1 11 1267777778888899999999988876421 3 2 3445
Q ss_pred HH----HHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 179 YC----YYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 179 Y~----yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
-+ |.-|.++..+++|++|+.+|+.++. .|..
T Consensus 100 A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 100 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 55 8999999999999999999999998 6874
No 143
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=90.14 E-value=1.8 Score=32.94 Aligned_cols=90 Identities=14% Similarity=-0.006 Sum_probs=65.3
Q ss_pred hHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHH
Q 022902 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (290)
Q Consensus 111 ~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~ 190 (290)
.....+....++..+..++.. +|.. ...+..+...+...+.|+.|...+++-+- .++........+..+.++..+
T Consensus 56 ~~~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~p~~~~~~~~~~~~~~~~~~ 130 (166)
T 1a17_A 56 AYLRTECYGYALGDATRAIEL-DKKY---IKGYYRRAASNMALGKFRAALRDYETVVK-VKPHDKDAKMKYQECNKIVKQ 130 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-Cccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHH
Confidence 334456666788888888875 4433 45677888899999999999999988663 332222334445666778899
Q ss_pred hcHHHHHHHHHHhhc
Q 022902 191 KRFRKALELLHNVVT 205 (290)
Q Consensus 191 k~~~~A~~~l~~ais 205 (290)
++|++|..+++.+..
T Consensus 131 ~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 131 KAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccchHH
Confidence 999999999998764
No 144
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=89.78 E-value=2.6 Score=38.89 Aligned_cols=92 Identities=7% Similarity=-0.020 Sum_probs=66.7
Q ss_pred HhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHH
Q 022902 110 DQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG 189 (290)
Q Consensus 110 ~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~ 189 (290)
......+....++..++.++.. +|.. ...+..+...+...+.++.|+..+++-+-..+.. ...++.-|.++..
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 390 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSL-NPEN---VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL---PEVPTFFAEILTD 390 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHH
Confidence 3344556677788888888764 4433 3567788889999999999999988765332222 2344555999999
Q ss_pred HhcHHHHHHHHHHhhc-cCc
Q 022902 190 QKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 190 ~k~~~~A~~~l~~ais-~P~ 208 (290)
+++|++|..+|+.++. .|.
T Consensus 391 ~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 391 RGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCc
Confidence 9999999999999997 554
No 145
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=89.66 E-value=0.58 Score=36.72 Aligned_cols=89 Identities=10% Similarity=-0.049 Sum_probs=69.3
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..+....++..+..|+. ++|.. ...|..+-..+...+.++.|+..+.+-+- +++ +....++.-|.+|..+++|
T Consensus 43 ~~~~~~~A~~~~~~al~-~~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~-~~p--~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 43 EAKEYDLAKKYICTYIN-VQERD---PKAHRFLGLLYELEENTDKAVECYRRSVE-LNP--TQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT--TCHHHHHHHHHHHHHHCSS
T ss_pred HcCCHHHHHHHHHHHHH-hCCCC---HHHHHHHHHHHHHcCchHHHHHHHHHHHH-hCC--CCHHHHHHHHHHHHHcCCh
Confidence 34666678999999886 46644 67889999999999999999999988763 332 2345677789999999999
Q ss_pred HHHHH-HHHHhhc-cCcc
Q 022902 194 RKALE-LLHNVVT-APMS 209 (290)
Q Consensus 194 ~~A~~-~l~~ais-~P~~ 209 (290)
++|.. +++.++. -|.+
T Consensus 116 ~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 116 DGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp SSHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 87655 5799998 7875
No 146
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=89.63 E-value=0.52 Score=42.57 Aligned_cols=94 Identities=11% Similarity=-0.036 Sum_probs=66.2
Q ss_pred HhhhccccccHHHHHHHHHhhCCCCCC--------------chhhHHHHHHHHHHccCchhhhhcccccccccCCchhHH
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSSTEH--------------LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFF 177 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~~~~--------------LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l 177 (290)
....++...++..++.|+.. +|.... ....|..+..+++..+.|+.|+..+++-+- +++ +..
T Consensus 189 ~~~~g~~~~A~~~y~~Al~~-~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~-~~p--~~~ 264 (338)
T 2if4_A 189 LFKEEKLEEAMQQYEMAIAY-MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT-EEE--KNP 264 (338)
T ss_dssp TCSSSCCHHHHHHHHHHHHH-SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HCT--TCH
T ss_pred HHhcCCHHHHHHHHHHHHHH-hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC--CCH
Confidence 33445555667777777653 322110 114788889999999999999999988663 221 345
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 178 ~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
..+|.-|.+|..+++|++|..+|+.++. .|..
T Consensus 265 ~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 265 KALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 6788999999999999999999999997 6764
No 147
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=89.60 E-value=1.1 Score=39.84 Aligned_cols=61 Identities=5% Similarity=0.018 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 142 ~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais 205 (290)
.+..+...+...+.|+.|+..+++-+- ++ .+....++.-|.++..+++|++|...|+.++.
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~-~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALR-LK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH-HC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-cC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444455555555555554444321 11 11222334445555555555555555555554
No 148
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=89.41 E-value=0.44 Score=35.35 Aligned_cols=57 Identities=21% Similarity=0.089 Sum_probs=41.5
Q ss_pred ccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 153 AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 153 ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.+.|+.|++.+++-+-.-....+....++.-|.+|..+++|++|..+|+.++. .|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 46677788777776531111235678889999999999999999999999998 6875
No 149
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=89.35 E-value=1.4 Score=41.53 Aligned_cols=47 Identities=11% Similarity=-0.113 Sum_probs=21.6
Q ss_pred ccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhccccc
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDD 166 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~ 166 (290)
+....++..++.++.. +|.. ...+..+...|...+.++.|..++++-
T Consensus 421 g~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 421 GEHDQAISAYTTAARL-FQGT---HLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp TCHHHHHHHHHHHHHT-TTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-Cccc---hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444455555555433 2211 223344555555555555555555443
No 150
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=89.34 E-value=5.1 Score=35.32 Aligned_cols=95 Identities=9% Similarity=-0.075 Sum_probs=70.3
Q ss_pred HhhhccccccHHHHHHHHHhhCCCC----CCchhhHHHHHHHHHHccCchhhhhcccccccccCC--chhHHHHHHHHHH
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSST----EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL--PRDFFLYCYYGGM 185 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~~----~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~--~~~~l~Y~yygG~ 185 (290)
....+....++..++.++......+ ......+..+-..+...+.++.|...+++-+-..+. ..+....++..|.
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 3345666678888888887664322 224456777888999999999999999875432221 2235567778899
Q ss_pred HHHHHhcHHHHHHHHHHhhcc
Q 022902 186 IFIGQKRFRKALELLHNVVTA 206 (290)
Q Consensus 186 i~~~~k~~~~A~~~l~~ais~ 206 (290)
++..+++|++|..+++.++..
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999863
No 151
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=89.04 E-value=0.81 Score=46.42 Aligned_cols=92 Identities=13% Similarity=-0.004 Sum_probs=58.9
Q ss_pred hHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHH
Q 022902 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (290)
Q Consensus 111 ~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~ 190 (290)
.+.+.++...++..++.|+. ++|+. ...|..+-..+...+.|+.|+..+++-+- +++ +...-++.-|.+|..+
T Consensus 52 ~l~~~g~~~eA~~~~~~Al~-l~P~~---~~a~~nLg~~l~~~g~~~~A~~~~~kAl~-l~P--~~~~a~~~Lg~~~~~~ 124 (723)
T 4gyw_A 52 VLQQQGKLQEALMHYKEAIR-ISPTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQ-INP--AFADAHSNLASIHKDS 124 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT--TCHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHH-hCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC--CCHHHHHHHHHHHHHc
Confidence 33444566667777777765 35432 45667777777777777777777766542 221 2345566677777777
Q ss_pred hcHHHHHHHHHHhhc-cCcc
Q 022902 191 KRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 191 k~~~~A~~~l~~ais-~P~~ 209 (290)
++|++|..+|+.|+. -|..
T Consensus 125 g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 125 GNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp TCHHHHHHHHHHHHHHCSCC
T ss_pred CCHHHHHHHHHHHHHhCCCC
Confidence 777777777777776 5653
No 152
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=89.03 E-value=2.6 Score=37.42 Aligned_cols=145 Identities=11% Similarity=0.077 Sum_probs=76.8
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..+....++..++.++.. +|.. ...|..+...+...+.++.|+..+++-+-.-+. ...-++.-|.++..+++|
T Consensus 215 ~~~~~~~A~~~~~~al~~-~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSL-SPNH---AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH---FPDAYCNLANALKEKGSV 287 (388)
T ss_dssp TTTCTTHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS---CHHHHHHHHHHHHHHSCH
T ss_pred HcCCHHHHHHHHHHHHhh-CcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCH
Confidence 344444555556555543 4432 345666777777777777777777665422121 122355667788888888
Q ss_pred HHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhh---hcchhHHHHHHHh-cCCCh
Q 022902 194 RKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---NFSQPYMELVNTY-NTGKI 268 (290)
Q Consensus 194 ~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k---~~~~pY~~la~af-~~~~~ 268 (290)
++|.++|+.++. .|.... ++..+..+ +...|+.. . .-....+.++ .....|..++.++ ..|+.
T Consensus 288 ~~A~~~~~~al~~~p~~~~------~~~~l~~~-~~~~g~~~-~----A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 355 (388)
T 1w3b_A 288 AEAEDCYNTALRLCPTHAD------SLNNLANI-KREQGNIE-E----AVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHH------HHHHHHHH-HHTTTCHH-H----HHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhhCcccHH------HHHHHHHH-HHHcCCHH-H----HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 888888888876 565321 12111111 12233332 1 0111112211 1234678888886 56776
Q ss_pred HHHHHHHHH
Q 022902 269 VELETYVQT 277 (290)
Q Consensus 269 ~~l~~~~~~ 277 (290)
++-....++
T Consensus 356 ~~A~~~~~~ 364 (388)
T 1w3b_A 356 QEALMHYKE 364 (388)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665555544
No 153
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=88.90 E-value=1.7 Score=41.63 Aligned_cols=86 Identities=6% Similarity=-0.035 Sum_probs=46.0
Q ss_pred ccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHH
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRK 195 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~ 195 (290)
++...++..++.|+.. +|.. ...+..+-..+...+.|+.|+..+++-+-.-+ +....++.-|.+|..+++|++
T Consensus 37 g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~ 109 (568)
T 2vsy_A 37 GDTTAGEMAVQRGLAL-HPGH---PEAVARLGRVRWTQQRHAEAAVLLQQASDAAP---EHPGIALWLGHALEDAGQAEA 109 (568)
T ss_dssp TCHHHHHHHHHHHHTT-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHH
Confidence 4444455555555542 3322 34455566666666666666666655442111 123444555666666666666
Q ss_pred HHHHHHHhhc-cCc
Q 022902 196 ALELLHNVVT-APM 208 (290)
Q Consensus 196 A~~~l~~ais-~P~ 208 (290)
|.++|+.++. .|.
T Consensus 110 A~~~~~~al~~~p~ 123 (568)
T 2vsy_A 110 AAAAYTRAHQLLPE 123 (568)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCC
Confidence 6666666665 454
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=88.59 E-value=0.85 Score=32.60 Aligned_cols=67 Identities=10% Similarity=0.087 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 140 Ts~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
...+..+...+...+.++.|...+++-+-.-+ +....++.-|.++...++|++|..+|+.++. .|..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 34566778889999999999999888653222 2345677789999999999999999999997 5654
No 155
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=87.87 E-value=1.5 Score=37.33 Aligned_cols=87 Identities=6% Similarity=-0.135 Sum_probs=65.6
Q ss_pred ccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHH
Q 022902 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRK 195 (290)
Q Consensus 116 ~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~ 195 (290)
++...++..++.++.. +|.. ...+..+...+...+.++.|...+++-+-.-+ +....++.-|.++..+++|++
T Consensus 35 ~~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~~~~~ 107 (327)
T 3cv0_A 35 ANLAEAALAFEAVCQA-APER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDP---KDIAVHAALAVSHTNEHNANA 107 (327)
T ss_dssp TCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCCHHH
Confidence 4555577777777764 4432 45667788899999999999999988653222 235567788999999999999
Q ss_pred HHHHHHHhhc-cCcc
Q 022902 196 ALELLHNVVT-APMS 209 (290)
Q Consensus 196 A~~~l~~ais-~P~~ 209 (290)
|..+|+.++. .|..
T Consensus 108 A~~~~~~~~~~~~~~ 122 (327)
T 3cv0_A 108 ALASLRAWLLSQPQY 122 (327)
T ss_dssp HHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHhCCcc
Confidence 9999999997 5653
No 156
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=87.82 E-value=1.3 Score=37.53 Aligned_cols=81 Identities=12% Similarity=0.065 Sum_probs=60.5
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHH----ccCchhhhhcccccccccCCchhHHHHHHHHHHHHHH-
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLL----AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG- 189 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~----ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~- 189 (290)
.+....++..++.|+.. + -...+..+-..+.. .+.++.|+..+++-+- .+...-++.-|.+|..
T Consensus 55 ~~~~~~A~~~~~~a~~~-~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDL-N-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD-----LKYAEGCASLGGIYHDG 123 (273)
T ss_dssp CCCHHHHHHHHHHHHHT-T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHC-C-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH-----cCCccHHHHHHHHHHcC
Confidence 56666677888887764 1 25566777777888 8888888888887662 2356667778888888
Q ss_pred ---HhcHHHHHHHHHHhhcc
Q 022902 190 ---QKRFRKALELLHNVVTA 206 (290)
Q Consensus 190 ---~k~~~~A~~~l~~ais~ 206 (290)
.+++++|.++|+.++..
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL 143 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCcccCHHHHHHHHHHHHhc
Confidence 89999999999998863
No 157
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=87.76 E-value=1.1 Score=41.47 Aligned_cols=97 Identities=7% Similarity=0.041 Sum_probs=66.1
Q ss_pred HHHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHH
Q 022902 107 RYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMI 186 (290)
Q Consensus 107 ~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i 186 (290)
..+..+...+....++..++.|+. ++|.. ...+..+-.++...+.|+.|+..+++-|- +++ +...-+++.|.+
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~-ldP~~---~~a~~~lg~~~~~~g~~~eAl~~~~~al~-l~P--~~~~a~~~lg~~ 243 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILN-QDAKN---YHAWQHRQWVIQEFKLWDNELQYVDQLLK-EDV--RNNSVWNQRYFV 243 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHHHH-HCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH-hCccC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH-hCC--CCHHHHHHHHHH
Confidence 344455566777778888888875 46643 45566677777788888888888888763 221 234455677778
Q ss_pred HHHHhcH-HHH-----HHHHHHhhc-cCccc
Q 022902 187 FIGQKRF-RKA-----LELLHNVVT-APMSS 210 (290)
Q Consensus 187 ~~~~k~~-~~A-----~~~l~~ais-~P~~~ 210 (290)
+..++++ ++| +++|+.+|. .|...
T Consensus 244 l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~ 274 (382)
T 2h6f_A 244 ISNTTGYNDRAVLEREVQYTLEMIKLVPHNE 274 (382)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHCCCCH
Confidence 8884444 777 588888888 67754
No 158
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=87.72 E-value=1.8 Score=39.62 Aligned_cols=90 Identities=9% Similarity=-0.047 Sum_probs=71.2
Q ss_pred hHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHH
Q 022902 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (290)
Q Consensus 111 ~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~ 190 (290)
.....++...++..+..++.. +|+ ...+..+...++..+.|+.|+..+++-+-.-| +....++.-|.+|..+
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~-~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALEL-KED----PVFYSNLSACYVSVGDLKKVVEMSTKALELKP---DYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHH-CCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHHhc-Ccc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh---HHHHHHHHHHHHHHHH
Confidence 334456777788888888875 453 56788899999999999999999988663222 2346778899999999
Q ss_pred hcHHHHHHHHHHhhc-cCc
Q 022902 191 KRFRKALELLHNVVT-APM 208 (290)
Q Consensus 191 k~~~~A~~~l~~ais-~P~ 208 (290)
++|++|...|+.++. .|.
T Consensus 87 g~~~~A~~~~~~~~~~~~~ 105 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDF 105 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSC
T ss_pred hhHHHHHHHHHHHHhcCCC
Confidence 999999999999997 453
No 159
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=87.32 E-value=1.5 Score=34.51 Aligned_cols=88 Identities=7% Similarity=0.082 Sum_probs=64.2
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHH-HHHHhcH
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMI-FIGQKRF 193 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i-~~~~k~~ 193 (290)
.++...++..++.++.. +|.. ...+..+...+...+.|+.|+..+++-+-.-+ .+ ...++.-|.+ +...++|
T Consensus 23 ~~~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~-~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA-NPQN---SEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--EN-AELYAALATVLYYQASQH 95 (177)
T ss_dssp ----CCCCHHHHHHHHH-CCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SC-HHHHHHHHHHHHHHTTTC
T ss_pred ccCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CC-HHHHHHHHHHHHHhcCCc
Confidence 34556688888888875 4433 45778899999999999999999988653222 22 3445556666 8899999
Q ss_pred --HHHHHHHHHhhc-cCcc
Q 022902 194 --RKALELLHNVVT-APMS 209 (290)
Q Consensus 194 --~~A~~~l~~ais-~P~~ 209 (290)
++|..+|+.++. .|..
T Consensus 96 ~~~~A~~~~~~al~~~p~~ 114 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNE 114 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHhCCCc
Confidence 999999999998 6764
No 160
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=87.19 E-value=0.97 Score=35.97 Aligned_cols=80 Identities=9% Similarity=-0.130 Sum_probs=61.1
Q ss_pred cHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHH
Q 022902 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELL 200 (290)
Q Consensus 121 ~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l 200 (290)
++..++.++. .+|.. ...|..+...+...+.++.|...+.+-+- .++....-.-++..|.++..++++++|..+|
T Consensus 93 a~~~~~~al~-~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 93 ELKRLEQELA-ANPDN---FELACELAVQYNQVGRDEEALELLWNILK-VNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HHHHHHHHHH-HSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHH-hCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHH-hCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 5788888875 46644 57788999999999999999999987653 3321111234556789999999999999999
Q ss_pred HHhhc
Q 022902 201 HNVVT 205 (290)
Q Consensus 201 ~~ais 205 (290)
+.++.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
No 161
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=86.97 E-value=3.7 Score=37.83 Aligned_cols=90 Identities=9% Similarity=-0.034 Sum_probs=68.3
Q ss_pred hHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHH
Q 022902 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (290)
Q Consensus 111 ~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~ 190 (290)
.....++...++..++.++.. +|+. ...+..+...+...+.|+.|+..+++-+- .+ .+....++.-|.++..+
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~--p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIEL-DPNE---PVFYSNISACYISTGDLEKVIEFTTKALE-IK--PDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhh-CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cC--CchHHHHHHHHHHHHHc
Confidence 334457778899999999875 5533 56788899999999999999999998753 22 13456788899999999
Q ss_pred hcHHHHHHHHHHhhc-cCc
Q 022902 191 KRFRKALELLHNVVT-APM 208 (290)
Q Consensus 191 k~~~~A~~~l~~ais-~P~ 208 (290)
++|++|...|+ ++. .|.
T Consensus 107 g~~~~A~~~~~-~~~~~~~ 124 (537)
T 3fp2_A 107 GNFTDAMFDLS-VLSLNGD 124 (537)
T ss_dssp TCHHHHHHHHH-HHC----
T ss_pred CCHHHHHHHHH-HHhcCCC
Confidence 99999999997 664 554
No 162
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=86.82 E-value=11 Score=35.45 Aligned_cols=83 Identities=11% Similarity=0.030 Sum_probs=61.6
Q ss_pred ccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhH-HHHHHHHHHHHHHHhcHHHHHH
Q 022902 120 RGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDF-FLYCYYGGMIFIGQKRFRKALE 198 (290)
Q Consensus 120 ~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~-l~Y~yygG~i~~~~k~~~~A~~ 198 (290)
.++..+..|+..+.|.. ..+|..+.......+.++.|..+.++-+- +++ .+. ..|.-| |.++..++++++|..
T Consensus 304 ~A~~~~~~Al~~~~p~~---~~l~~~~~~~~~~~g~~~~A~~~~~~al~-~~p-~~~~~~~~~~-~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 304 EAANIYERAISTLLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLA-IED-IDPTLVYIQY-MKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHTTTTCSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-SSS-SCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhC-ccc-cCchHHHHHH-HHHHHHhcCHHHHHH
Confidence 57888999987666644 56788888888999999999999988653 332 222 334444 455667899999999
Q ss_pred HHHHhhccCc
Q 022902 199 LLHNVVTAPM 208 (290)
Q Consensus 199 ~l~~ais~P~ 208 (290)
.|+.++..|.
T Consensus 378 ~~~~Al~~~~ 387 (530)
T 2ooe_A 378 IFKKAREDAR 387 (530)
T ss_dssp HHHHHHTCTT
T ss_pred HHHHHHhccC
Confidence 9999998654
No 163
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=85.57 E-value=0.86 Score=35.59 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=46.2
Q ss_pred HHHHHHHHHccCchhhhhcccccccccC--------C-------chhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cC
Q 022902 144 PEFLQLCLLAKCYKAGLSVLEDDIYEIN--------L-------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-AP 207 (290)
Q Consensus 144 ~~ll~lcL~ak~y~~Al~vl~~~i~~i~--------~-------~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P 207 (290)
...-..++..+.|+.|+....+-+-.++ . .......++..|.+|..+++|++|..+++.++. -|
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 3344556666777777666665443210 0 223456788899999999999999999999998 56
Q ss_pred cc
Q 022902 208 MS 209 (290)
Q Consensus 208 ~~ 209 (290)
..
T Consensus 95 ~~ 96 (162)
T 3rkv_A 95 TN 96 (162)
T ss_dssp TC
T ss_pred cc
Confidence 64
No 164
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=85.53 E-value=1.1 Score=39.01 Aligned_cols=65 Identities=11% Similarity=0.044 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 142 ~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.+..+...+...+.|+.|+..+++-+-.-+ +...+++..|.+|..+++|++|...|+.++. .|..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 455667788899999999999988764322 3467888999999999999999999999998 6764
No 165
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=85.49 E-value=5.3 Score=37.59 Aligned_cols=156 Identities=13% Similarity=0.067 Sum_probs=92.5
Q ss_pred HhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHH
Q 022902 110 DQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG 189 (290)
Q Consensus 110 ~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~ 189 (290)
......++...+...+..|+.. +|.. .+.++..+.+...+.+.++.|..++++-+-.-+ ...-.|.-.+.+.+..
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~~-~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~--~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLAI-EDID--PTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHS-SSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT--CCTHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHhCc-cccC--chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC--CchHHHHHHHHHHHHH
Confidence 3334455666677788888763 4432 245788888888889999999999988764322 2223344444455567
Q ss_pred HhcHHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhhhh----------cchhHHH
Q 022902 190 QKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN----------FSQPYME 258 (290)
Q Consensus 190 ~k~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~~G~~~~~lPk~~s~~~~r~~k~----------~~~pY~~ 258 (290)
+|++++|...|+.++. .|... +.+..++-. ++..|+.. . .-....|.++. ...-|.+
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~------~~~~~~~~~-~~~~g~~~-~----Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIP------EYVLAYIDY-LSHLNEDN-N----TRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCH------HHHHHHHHH-HTTTTCHH-H----HHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred cCChhHHHHHHHHHHHHCCCCH------HHHHHHHHH-HHhCCCHh-h----HHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 9999999999999997 67532 222222211 12234322 1 11222233221 1112333
Q ss_pred HHHHhcCCChHHHHHHHHHhHHhhhc
Q 022902 259 LVNTYNTGKIVELETYVQTNREKFES 284 (290)
Q Consensus 259 la~af~~~~~~~l~~~~~~~~~~f~~ 284 (290)
+- -..||.+....+..+..+.|.+
T Consensus 472 ~e--~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 472 FE--SNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HH--HHSSCHHHHHHHHHHHHHHTHH
T ss_pred HH--HHcCCHHHHHHHHHHHHHHCch
Confidence 32 2468999998888888777764
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=85.34 E-value=1.6 Score=35.27 Aligned_cols=68 Identities=9% Similarity=-0.040 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHccCchhhhhcccccccccCCch---h----------HHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cC
Q 022902 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPR---D----------FFLYCYYGGMIFIGQKRFRKALELLHNVVT-AP 207 (290)
Q Consensus 142 ~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~---~----------~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P 207 (290)
.+..+-..++..+.|+.|+..+++-+-..+... . ....++..|.+|..+++|++|..+++.++. .|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 345667788899999999998888664222111 0 136778899999999999999999999998 66
Q ss_pred cc
Q 022902 208 MS 209 (290)
Q Consensus 208 ~~ 209 (290)
..
T Consensus 120 ~~ 121 (198)
T 2fbn_A 120 NN 121 (198)
T ss_dssp TC
T ss_pred cc
Confidence 53
No 167
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=84.93 E-value=1.1 Score=37.01 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=43.3
Q ss_pred CchhhhhcccccccccCCchhHHHHHHHHHHHHHHHh-----------cHHHHHHHHHHhhc-cCccchhHHHHHH
Q 022902 155 CYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK-----------RFRKALELLHNVVT-APMSSINAIAVEA 218 (290)
Q Consensus 155 ~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k-----------~~~~A~~~l~~ais-~P~~~~s~i~veA 218 (290)
.++.|+..+++.|- +++ +...-+|..|.+|..++ +|++|..+|+.|+. -|......-.++.
T Consensus 61 ~~~eAi~~le~AL~-ldP--~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 61 MIQEAITKFEEALL-IDP--KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHH-HCT--TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCc--CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 36677777777663 332 24556788999998874 99999999999998 7886544333333
No 168
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=84.80 E-value=10 Score=33.33 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=64.0
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCc-hhhHHHHHHHHHHccCchhhhhcccccccccC---CchhHHHHHHHHHHHHHH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHL-TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---LPRDFFLYCYYGGMIFIG 189 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~L-Ts~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~---~~~~~l~Y~yygG~i~~~ 189 (290)
..+.+..+...++.++.. .+..... ...+..+.+..+..+.++.|...++.-+-..+ ...+..+-++..|.++..
T Consensus 227 ~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp HTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 445555666666666532 2222122 23456778899999999999999987543221 133455678888999999
Q ss_pred HhcHHHHHHHHHHhhc
Q 022902 190 QKRFRKALELLHNVVT 205 (290)
Q Consensus 190 ~k~~~~A~~~l~~ais 205 (290)
++++++|..+|+.++.
T Consensus 306 ~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 306 AGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 9999999999999997
No 169
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=84.39 E-value=2.4 Score=35.74 Aligned_cols=81 Identities=10% Similarity=0.010 Sum_probs=65.0
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHH----ccCchhhhhcccccccccCCchhHHHHHHHHHHHHHH-
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLL----AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG- 189 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~----ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~- 189 (290)
.+....++..++.|+.. + -...+..+-..+.. .+.++.|+..+++-+- .+...-++.-|.+|..
T Consensus 91 ~~~~~~A~~~~~~a~~~----~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDL----K--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-----LNDGDGCTILGSLYDAG 159 (273)
T ss_dssp CCCHHHHHHHHHHHHHT----T--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHc----C--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHcC
Confidence 56677788899998874 1 35677788888888 9999999999988763 2235566778999998
Q ss_pred ---HhcHHHHHHHHHHhhcc
Q 022902 190 ---QKRFRKALELLHNVVTA 206 (290)
Q Consensus 190 ---~k~~~~A~~~l~~ais~ 206 (290)
.+++++|..+|+.++..
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999974
No 170
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=82.78 E-value=2 Score=31.00 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCccc
Q 022902 177 FLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (290)
Q Consensus 177 l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~~ 210 (290)
...+|.-|.+|..+++|++|..+|+.++. -|...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 41 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV 41 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 45678889999999999999999999998 67743
No 171
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=82.56 E-value=1.3 Score=35.21 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 175 DFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 175 ~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.--.|.||-|.-+..+|+|++|..+++.++. -|.+
T Consensus 72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 4568899999999999999999999999998 7864
No 172
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=82.46 E-value=4.5 Score=38.93 Aligned_cols=91 Identities=8% Similarity=-0.032 Sum_probs=66.0
Q ss_pred hhccccccHHHHHHHHHhhCC----C-CCCchhhHHHHHHHHHHccCchhhhhcccccc--ccc---CCchhHHHHHHHH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQS----S-TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDI--YEI---NLPRDFFLYCYYG 183 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~----~-~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i--~~i---~~~~~~l~Y~yyg 183 (290)
..++...++...+.++..... + +.+++ ....|...+...+.|+.|+++..+.+ .+- +..-++..-++--
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~-~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLR-LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345555577777777765432 1 23333 33567778889999999999988753 211 2256889999999
Q ss_pred HHHHHHHhcHHHHHHHHHHhhc
Q 022902 184 GMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 184 G~i~~~~k~~~~A~~~l~~ais 205 (290)
|.+|..+++|++|..+|++|+.
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999873
No 173
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=81.99 E-value=3.4 Score=30.31 Aligned_cols=32 Identities=22% Similarity=0.171 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 178 ~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
..+++-|.++..++++++|..+++.++. .|..
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 4457779999999999999999999997 7886
No 174
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=81.92 E-value=2.1 Score=38.53 Aligned_cols=64 Identities=9% Similarity=0.175 Sum_probs=54.1
Q ss_pred hhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhccC
Q 022902 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAP 207 (290)
Q Consensus 140 Ts~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~P 207 (290)
+-++..+..+....+.|+.|...++.-+.. .+.++ -.|--|.++...++|++|+..|+.++..|
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhccC
Confidence 456778888999999999999999887642 24455 67889999999999999999999888876
No 175
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=81.86 E-value=13 Score=34.78 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=52.0
Q ss_pred hhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 140 Ts~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
.-.|..+.-..+..+.++.|...+++.+- +++ + ...+...|.++...++|++|.+.|++|+. -|.
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~-Ln~--s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGID-LEM--S-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCC--C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHh-cCC--C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 44556666667778999999999999763 332 2 34558889999999999999999999998 687
No 176
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=80.16 E-value=2.2 Score=28.95 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 175 DFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 175 ~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
+....++..|.++...++|++|..+|+.++. .|..
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 42 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 42 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 3467788899999999999999999999997 5654
No 177
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=79.89 E-value=3.7 Score=40.75 Aligned_cols=88 Identities=8% Similarity=-0.105 Sum_probs=57.0
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~ 193 (290)
..++...++..++.|+. ++|.. ...|..+-..+...+.|+. +..+++-+- ++ + +....++.-|.++..+++|
T Consensus 479 ~~g~~~~A~~~~~~al~-l~P~~---~~~~~~lg~~~~~~g~~~~-~~~~~~al~-~~-P-~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLD-TFPGE---LAPKLALAATAELAGNTDE-HKFYQTVWS-TN-D-GVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHTCHHHHHHHHHHHHH-HSTTC---SHHHHHHHHHHHHHTCCCT-TCHHHHHHH-HC-T-TCHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHH-hCCCC---hHHHHHHHHHHHHcCChHH-HHHHHHHHH-hC-C-chHHHHHHHHHHHHHcCCH
Confidence 34455556666666654 34433 3455666666777777776 666655442 22 1 2344667889999999999
Q ss_pred HHHHHHHHHhhc-cCcc
Q 022902 194 RKALELLHNVVT-APMS 209 (290)
Q Consensus 194 ~~A~~~l~~ais-~P~~ 209 (290)
++|.++|+.++. .|..
T Consensus 551 ~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 551 VGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp HHHHHHHHTSCTTSTTH
T ss_pred HHHHHHHHhhcccCccc
Confidence 999999999997 6763
No 178
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=79.17 E-value=5.7 Score=37.85 Aligned_cols=93 Identities=4% Similarity=-0.234 Sum_probs=72.1
Q ss_pred HHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHH
Q 022902 109 KDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFI 188 (290)
Q Consensus 109 ~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~ 188 (290)
+......++...++..++.|+.. +|.. ...+..+...+...+.++.|...+++-+-.-+ +....++.-|.++.
T Consensus 64 g~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~ 136 (568)
T 2vsy_A 64 GRVRWTQQRHAEAAVLLQQASDA-APEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQLLP---EEPYITAQLLNWRR 136 (568)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHH
Confidence 33344557777789999999875 5533 56788899999999999999999988653222 23456678899999
Q ss_pred HH---hcHHHHHHHHHHhhc-cCc
Q 022902 189 GQ---KRFRKALELLHNVVT-APM 208 (290)
Q Consensus 189 ~~---k~~~~A~~~l~~ais-~P~ 208 (290)
.+ +++++|.+.|+.++. .|.
T Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 137 RLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HhhccccHHHHHHHHHHHHhcCCc
Confidence 99 999999999999998 565
No 179
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=78.97 E-value=11 Score=34.23 Aligned_cols=98 Identities=15% Similarity=0.085 Sum_probs=65.3
Q ss_pred cHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCC-chhHHHHHHHHHHHHHHHhcHHHHHHH
Q 022902 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-PRDFFLYCYYGGMIFIGQKRFRKALEL 199 (290)
Q Consensus 121 ~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~-~~~~l~Y~yygG~i~~~~k~~~~A~~~ 199 (290)
++..+..++. .+|.. ...+..+-..+...+.|+.|+....+-+-.-+. ......|+.||++....+|++++|.++
T Consensus 319 A~~~~~~a~~-~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 319 AVAHLKKADE-ANDNL---FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHHHHHHHH-HCTTT---CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHhh-cCCch---hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4444555544 34433 344567888999999999999988876531111 222345777888888889999999999
Q ss_pred HHHhhc-cCccchhHHHHHHHHHH
Q 022902 200 LHNVVT-APMSSINAIAVEAYKKY 222 (290)
Q Consensus 200 l~~ais-~P~~~~s~i~veAyKK~ 222 (290)
|+.++. .|...-..-..++.+++
T Consensus 395 y~kal~i~~~~~~~~~~~~~l~~~ 418 (472)
T 4g1t_A 395 FIEGVKINQKSREKEKMKDKLQKI 418 (472)
T ss_dssp HHHHHHSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHHHH
Confidence 999998 56544334444444444
No 180
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=78.45 E-value=2 Score=37.38 Aligned_cols=81 Identities=12% Similarity=0.031 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 022902 122 VGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLH 201 (290)
Q Consensus 122 i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~ 201 (290)
..-+...+.++.|.. ...+..+...++..+.++.|...+.+-+-.-| +....++.-|.++..++++++|...|+
T Consensus 102 ~~~l~~~l~~~lp~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~la~~~~~~g~~~~A~~~l~ 175 (287)
T 3qou_A 102 EEAIRALLDXVLPRE---EELXAQQAMQLMQESNYTDALPLLXDAWQLSN---QNGEIGLLLAETLIALNRSEDAEAVLX 175 (287)
T ss_dssp HHHHHHHHHHHSCCH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT---SCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCc---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---cchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345666666666543 45667888899999999999999988653222 235678888999999999999999999
Q ss_pred Hhhc-cCc
Q 022902 202 NVVT-APM 208 (290)
Q Consensus 202 ~ais-~P~ 208 (290)
.++. .|.
T Consensus 176 ~~~~~~p~ 183 (287)
T 3qou_A 176 TIPLQDQD 183 (287)
T ss_dssp TSCGGGCS
T ss_pred hCchhhcc
Confidence 9987 674
No 181
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.38 E-value=4.4 Score=32.49 Aligned_cols=36 Identities=8% Similarity=-0.016 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 174 RDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 174 ~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
..-=.|.||.++-+..+|+|++|+.+.+.++. -|.+
T Consensus 75 ~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 75 SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 34578999999999999999999999999997 7874
No 182
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=77.20 E-value=4.3 Score=36.30 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=55.4
Q ss_pred hhhHHHHHHHHHHccCchhhhhcccccccccCCc------------hhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-c
Q 022902 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP------------RDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-A 206 (290)
Q Consensus 140 Ts~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~------------~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~ 206 (290)
...+..+-..+...+.|+.|+..+++-+-..+.. ......++..|.+|..+++|++|..+|+.++. .
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3456777888999999999999988866432221 12267888899999999999999999999998 6
Q ss_pred Ccc
Q 022902 207 PMS 209 (290)
Q Consensus 207 P~~ 209 (290)
|..
T Consensus 227 p~~ 229 (336)
T 1p5q_A 227 SNN 229 (336)
T ss_dssp TTC
T ss_pred CCc
Confidence 764
No 183
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=76.97 E-value=1.4 Score=31.17 Aligned_cols=87 Identities=6% Similarity=-0.134 Sum_probs=63.9
Q ss_pred HhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCC---chhHHHHHHHHHHHHH
Q 022902 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL---PRDFFLYCYYGGMIFI 188 (290)
Q Consensus 112 ~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~---~~~~l~Y~yygG~i~~ 188 (290)
....++...++..++.|+.. +|.. ...+..+-..+...+.|+.|+..+++-+---+. .......++..|.++.
T Consensus 14 ~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 89 (111)
T 2l6j_A 14 LFKQGLYREAVHCYDQLITA-QPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQG 89 (111)
T ss_dssp HHTTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 33456667788888888865 5533 456788899999999999999999887632222 1224667788899999
Q ss_pred HHhcHHHHHHHHHH
Q 022902 189 GQKRFRKALELLHN 202 (290)
Q Consensus 189 ~~k~~~~A~~~l~~ 202 (290)
.++++++|.+.|+.
T Consensus 90 ~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 90 AVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHCCCCCSSSSSS
T ss_pred HHHhHhhhHhHHHH
Confidence 99998888766553
No 184
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=75.33 E-value=5.5 Score=36.18 Aligned_cols=89 Identities=15% Similarity=0.164 Sum_probs=56.8
Q ss_pred hhccccccHHHHHHHHHhhCCCCCCchhhHHHHH----HHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHH
Q 022902 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFL----QLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG 189 (290)
Q Consensus 114 ~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll----~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~ 189 (290)
..+....++..++.|+. ++|.. ...+..+. ++....+.++.|...+++.+-.-+ +....++..|.+|..
T Consensus 187 ~~~~~~~al~~~~~al~-l~p~~---~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~---~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 187 NWPPSQNAIDPLRQAIR-LNPDN---QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP---GVTDVLRSAAKFYRR 259 (472)
T ss_dssp HSCCCCCTHHHHHHHHH-HCSSC---HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS---SCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhh-cCCcc---hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHH
Confidence 44556678888888875 45543 22233322 223345678888888877543222 234456678999999
Q ss_pred HhcHHHHHHHHHHhhc-cCcc
Q 022902 190 QKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 190 ~k~~~~A~~~l~~ais-~P~~ 209 (290)
+++|++|..+|+.++. .|..
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~ 280 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNN 280 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC
T ss_pred cCchHHHHHHHHHHHHhCCCh
Confidence 9999999999999997 7875
No 185
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=74.64 E-value=26 Score=32.77 Aligned_cols=56 Identities=9% Similarity=-0.113 Sum_probs=43.1
Q ss_pred HHHHccCchhhhhcccccccc----c-CCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhh
Q 022902 149 LCLLAKCYKAGLSVLEDDIYE----I-NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVV 204 (290)
Q Consensus 149 lcL~ak~y~~Al~vl~~~i~~----i-~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ai 204 (290)
.+...+.|+.|++...+-.-. + +..-+++.-+.-.|.+|..+++|++|..+++.++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 455677888888877654311 1 1256788999999999999999999999999976
No 186
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=73.69 E-value=4.6 Score=29.20 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 177 FLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 177 l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
...++.-|.+|..+++|++|..+|+.++. .|..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 45677889999999999999999999998 6764
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=73.43 E-value=4.9 Score=32.96 Aligned_cols=64 Identities=13% Similarity=-0.057 Sum_probs=45.3
Q ss_pred HHHHHHHHHHccCchhhhhcccccccccCC-------c--hhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcc
Q 022902 143 HPEFLQLCLLAKCYKAGLSVLEDDIYEINL-------P--RDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA 206 (290)
Q Consensus 143 H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~-------~--~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~ 206 (290)
|...-..+...+.|+.|+...++-|---|. . ......++..|.++..+++|++|+.+++.||..
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344445566778888888777765532221 0 012337889999999999999999999999864
No 188
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=72.46 E-value=4.7 Score=38.17 Aligned_cols=86 Identities=13% Similarity=0.133 Sum_probs=63.5
Q ss_pred cccHHHHHHHHHhhC----CC-CCCchhhHHHHHHHHHHccCchhhhhcccccc--ccc---CCchhHHHHHHHHHHHHH
Q 022902 119 IRGVGPMLTAIRKIQ----SS-TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDI--YEI---NLPRDFFLYCYYGGMIFI 188 (290)
Q Consensus 119 ~~~i~~L~~Ai~r~~----~~-~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i--~~i---~~~~~~l~Y~yygG~i~~ 188 (290)
..++..++.++.... |+ +.+++ ....+...+..-+.|+.|+++..+.+ .+- +..-++..-++--|.+|.
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~-~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~ 393 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFEDSNVYMLH-MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYM 393 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccChhchHHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 446677777766432 22 23333 33557788889999999999988853 221 236688888999999999
Q ss_pred HHhcHHHHHHHHHHhhc
Q 022902 189 GQKRFRKALELLHNVVT 205 (290)
Q Consensus 189 ~~k~~~~A~~~l~~ais 205 (290)
.+++|++|..+|++|+.
T Consensus 394 ~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 394 GLENKAAGEKALKKAIA 410 (433)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHH
Confidence 99999999999999885
No 189
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=72.06 E-value=3.3 Score=30.38 Aligned_cols=28 Identities=7% Similarity=0.186 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHhhcc
Q 022902 179 YCYYGGMIFIGQKRFRKALELLHNVVTA 206 (290)
Q Consensus 179 Y~yygG~i~~~~k~~~~A~~~l~~ais~ 206 (290)
=||--|.++..+++|++|..||+.|+..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~ 34 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQ 34 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHh
Confidence 3678899999999999999999999975
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=71.65 E-value=5.3 Score=36.53 Aligned_cols=67 Identities=6% Similarity=0.045 Sum_probs=52.8
Q ss_pred HHHHHHHHHHccCchhhhhcccccccccC-------------CchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 143 HPEFLQLCLLAKCYKAGLSVLEDDIYEIN-------------LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 143 H~~ll~lcL~ak~y~~Al~vl~~~i~~i~-------------~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
+..+-..++..+.|+.|+..+++-+-..+ ........++..|.+|..+++|++|.++++.++. .|.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 56677788899999999988887663111 1234567788899999999999999999999998 575
Q ss_pred c
Q 022902 209 S 209 (290)
Q Consensus 209 ~ 209 (290)
.
T Consensus 306 ~ 306 (370)
T 1ihg_A 306 N 306 (370)
T ss_dssp C
T ss_pred h
Confidence 3
No 191
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=71.33 E-value=6.1 Score=37.19 Aligned_cols=87 Identities=13% Similarity=0.019 Sum_probs=61.6
Q ss_pred ccccHHHHHHHHHhhC----CC-CCCchhhHHHHHHHHHHccCchhhhhcccccc--ccc---CCchhHHHHHHHHHHHH
Q 022902 118 PIRGVGPMLTAIRKIQ----SS-TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDI--YEI---NLPRDFFLYCYYGGMIF 187 (290)
Q Consensus 118 p~~~i~~L~~Ai~r~~----~~-~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i--~~i---~~~~~~l~Y~yygG~i~ 187 (290)
...++...+.++.... ++ +.++ .....+...|...+.|+.|+++..+.+ .+- +..-++..-++--|.+|
T Consensus 303 ~~~a~~~~~~~L~~~~~~lg~~h~~~~-~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~ 381 (429)
T 3qwp_A 303 WEQVLAMCQAIISSNSERLPDINIYQL-KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQ 381 (429)
T ss_dssp HHHHHHHHHHHHTCSSCCCCTTSHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcCCccchHHH-HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHH
Confidence 3445666666664322 11 1222 233456677888999999999988753 221 23668899999999999
Q ss_pred HHHhcHHHHHHHHHHhhc
Q 022902 188 IGQKRFRKALELLHNVVT 205 (290)
Q Consensus 188 ~~~k~~~~A~~~l~~ais 205 (290)
..+++|++|..+|+.|+.
T Consensus 382 ~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 382 LHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 999999999999999885
No 192
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=71.19 E-value=3.4 Score=33.54 Aligned_cols=34 Identities=9% Similarity=-0.012 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 176 FFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 176 ~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
-=.|.||.+.-+..+|+|++|+.+.+.++. -|.+
T Consensus 76 ~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 76 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 456899999999999999999999999998 6874
No 193
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=71.04 E-value=6 Score=28.80 Aligned_cols=50 Identities=10% Similarity=-0.083 Sum_probs=34.5
Q ss_pred chhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCc
Q 022902 156 YKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (290)
Q Consensus 156 y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~ 208 (290)
.+.|...+++-+- ++ -+..+=.++.|.++...++|++|.+.++.++. .|.
T Consensus 25 ~~~A~~~l~~AL~-~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 25 TDEVSLLLEQALQ-LE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHH-HC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHH-HC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3455555544431 22 12344455669999999999999999999997 676
No 194
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=70.10 E-value=5.7 Score=37.24 Aligned_cols=69 Identities=9% Similarity=0.075 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHccCchhhhhcccccccccCCc------------hhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cC
Q 022902 141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP------------RDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-AP 207 (290)
Q Consensus 141 s~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~------------~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P 207 (290)
..+..+-..+...+.|+.|+...++-+-..+.. ......++..|.+|..+++|++|+.+|+.|+. .|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 355667778899999999999988765422211 12367888899999999999999999999998 67
Q ss_pred cc
Q 022902 208 MS 209 (290)
Q Consensus 208 ~~ 209 (290)
..
T Consensus 349 ~~ 350 (457)
T 1kt0_A 349 AN 350 (457)
T ss_dssp TC
T ss_pred cc
Confidence 64
No 195
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=68.21 E-value=40 Score=26.81 Aligned_cols=69 Identities=12% Similarity=0.205 Sum_probs=42.8
Q ss_pred CccHHHHHHHHHhh-----cCChhcHHHHHHHHHHhHHHHHhhhhhhhhhhhhcCcchhHHHHHHHHHHhhhccc
Q 022902 1 MQSIENLVTQIQGL-----SSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSI 70 (290)
Q Consensus 1 ~~~l~~~~~~i~~~-----~~s~~~~~~L~~~l~~~~~~l~~~~~~~~~~L~~ldp~~~sl~~L~vL~a~~~~~~ 70 (290)
|+.++.|.+.+++| +.|+.....|...-..+..--..-...+..-+.. -|..+-|+.||++...+....
T Consensus 1 m~~v~~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k-~~~~~KL~~LYL~DsIvrn~~ 74 (145)
T 3d9j_A 1 MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQK-CKPEYKVPGLYVIDSIVRQSR 74 (145)
T ss_dssp -CHHHHHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHH-SCGGGHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCccceeehhhhhHHHHHHhh
Confidence 89999999999999 4566677777665544321111111112222233 366788999999999886544
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=64.69 E-value=15 Score=28.05 Aligned_cols=75 Identities=8% Similarity=-0.130 Sum_probs=49.6
Q ss_pred cHHHHHHHHHhhCCCCCCchhhHHHHHHHHHH----ccCchhhhhcccccccccCCchhHHHHHHHHHHHHHH----Hhc
Q 022902 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLL----AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG----QKR 192 (290)
Q Consensus 121 ~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~----ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~----~k~ 192 (290)
++..++.|+.. + -...+..+-.++.. .+.++.|...+.+..- ...-.=+|.-|.+|.. .++
T Consensus 44 A~~~~~~Aa~~----g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-----~g~~~a~~~Lg~~y~~G~g~~~d 112 (138)
T 1klx_A 44 LFQYLSKACEL----N--SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG-----LNDQDGCLILGYKQYAGKGVVKN 112 (138)
T ss_dssp HHHHHHHHHHT----T--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHcC----C--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHCCCCCCcC
Confidence 45555555543 1 12334455555555 6788888888877652 2234445677888887 899
Q ss_pred HHHHHHHHHHhhcc
Q 022902 193 FRKALELLHNVVTA 206 (290)
Q Consensus 193 ~~~A~~~l~~ais~ 206 (290)
+++|.+||+.+...
T Consensus 113 ~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 113 EKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 99999999999864
No 197
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=61.49 E-value=4.4 Score=38.37 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=46.0
Q ss_pred HHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 149 LCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 149 lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
.+...+.|+.|+..+++-+-. + .+....++..|.+|..+++|++|..+|+.++. .|..
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~-~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL-N--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH-C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHhCCHHHHHHHHHHHHHh-C--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 345678888998888876532 2 23467888999999999999999999999998 5754
No 198
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=59.91 E-value=1.7e+02 Score=32.51 Aligned_cols=58 Identities=7% Similarity=-0.073 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 140 Ts~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais 205 (290)
..+|..+.+.++..+.|+.|..-..+. +....++-.|.++..+++|++|.++|.+|..
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 678889999999999999998887554 4466677799999999999999999999885
No 199
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=59.62 E-value=13 Score=30.33 Aligned_cols=101 Identities=11% Similarity=0.035 Sum_probs=67.5
Q ss_pred cccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHH----ccCchhhhhcccccccccCCchhHHHHHHHHHHHHHH---
Q 022902 117 APIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLL----AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG--- 189 (290)
Q Consensus 117 ~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~----ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~--- 189 (290)
.+..++..++.|+.. + -...+..|-.++.. .+.++.|+..+.+-+- .....+...=+|.-|.+|..
T Consensus 68 ~~~~A~~~~~~A~~~----g--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~~~~a~~~Lg~~y~~g~g 140 (212)
T 3rjv_A 68 DYPQARQLAEKAVEA----G--SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DSESDAAVDAQMLLGLIYASGVH 140 (212)
T ss_dssp CHHHHHHHHHHHHHT----T--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-STTSHHHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHHHC----C--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCC
Confidence 455678888888642 1 13344555556655 7889999998888663 22122346677788889988
Q ss_pred -HhcHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHhcCC
Q 022902 190 -QKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQ 232 (290)
Q Consensus 190 -~k~~~~A~~~l~~ais~P~~~~s~i~veAyKK~iLv~Ll~~G~ 232 (290)
.+++++|.++|+.++..|....+ .+-|-.+...|.
T Consensus 141 ~~~d~~~A~~~~~~A~~~~~~~~a--------~~~Lg~~y~~g~ 176 (212)
T 3rjv_A 141 GPEDDVKASEYFKGSSSLSRTGYA--------EYWAGMMFQQGE 176 (212)
T ss_dssp SSCCHHHHHHHHHHHHHTSCTTHH--------HHHHHHHHHHCB
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHH--------HHHHHHHHHcCC
Confidence 89999999999999987654332 134444455665
No 200
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=59.42 E-value=20 Score=33.18 Aligned_cols=59 Identities=5% Similarity=-0.125 Sum_probs=30.2
Q ss_pred hHHHHHHHHHH----ccCchhhhhcccccccccCCchhHHHHHHHHHHHHHH----HhcHHHHHHHHHHhhc
Q 022902 142 LHPEFLQLCLL----AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG----QKRFRKALELLHNVVT 205 (290)
Q Consensus 142 ~H~~ll~lcL~----ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~----~k~~~~A~~~l~~ais 205 (290)
.+..|-..+.. .+.++.|+..+.+-. ......-.+.-|.+|.. .+++++|.++|+.++.
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-----~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAA-----EQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 33444444444 445555555555433 11233444555555655 5566666666666654
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=58.62 E-value=9.7 Score=26.35 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHhhc-cCcc
Q 022902 181 YYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (290)
Q Consensus 181 yygG~i~~~~k~~~~A~~~l~~ais-~P~~ 209 (290)
|-.|.++...++|++|..+|+.++. .|..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 33 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG 33 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 4578999999999999999999997 6764
No 202
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=57.62 E-value=11 Score=31.13 Aligned_cols=61 Identities=11% Similarity=0.039 Sum_probs=47.1
Q ss_pred HHHHHHHHccCchhhhhccccc--ccccC----CchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 145 EFLQLCLLAKCYKAGLSVLEDD--IYEIN----LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 145 ~ll~lcL~ak~y~~Al~vl~~~--i~~i~----~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais 205 (290)
+=++..+..+.|+.|..+-+.- +.+-+ ++..-.+=++|-|-.+-+.++|.+|...|++|+.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3457788888999998887763 32222 2556677788889999999999999999999873
No 203
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=55.33 E-value=8 Score=36.53 Aligned_cols=95 Identities=13% Similarity=0.066 Sum_probs=62.0
Q ss_pred cCchhhhhccccccc--c--c-CCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHH
Q 022902 154 KCYKAGLSVLEDDIY--E--I-NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLI 228 (290)
Q Consensus 154 k~y~~Al~vl~~~i~--~--i-~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~P~~~~s~i~veAyKK~iLv~Ll 228 (290)
+.|+.|+++.++-.- + + +..-+++.-+.-.|.+|..+++|++|..++++++. .++|.
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~------------i~~~~------ 373 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK------------PYSKH------ 373 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHH------
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH------------HHHHH------
Confidence 457888888776432 1 1 22567899999999999999999999999999762 23332
Q ss_pred hcCCCCCCCCCCCCHHHHHhhhhcchhHHHHHHHh-cCCChHHHHHHHHHhHHhh
Q 022902 229 HHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTY-NTGKIVELETYVQTNREKF 282 (290)
Q Consensus 229 ~~G~~~~~lPk~~s~~~~r~~k~~~~pY~~la~af-~~~~~~~l~~~~~~~~~~f 282 (290)
.|. .+|.+. ..|..|+..| ..|+.++-....++--+++
T Consensus 374 -lG~--------~Hp~~a-------~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 374 -YPV--------YSLNVA-------SMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp -SCS--------SCHHHH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -cCC--------CChHHH-------HHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 232 134433 3455666665 4567666666665544444
No 204
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.85 E-value=24 Score=36.71 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 142 ~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais 205 (290)
....++..|+.-+.|+.|..++. ..+- .-.- -|.-|++|...+++++|.++|+.|-.
T Consensus 812 ~~~~l~~~L~~~~~~~~a~eL~~--~~~~---t~~~--~yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 812 LVTELVEKLFLFKQYNACMQLIG--WLNS---DPIA--VYLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHGG--GCCS---SHHH--HHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHhcHHHHHHHHHh--hcCC---ChHH--HHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 33568888888899988876552 2111 1122 38899999999999999999998764
No 205
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=48.74 E-value=12 Score=33.41 Aligned_cols=67 Identities=13% Similarity=-0.035 Sum_probs=48.5
Q ss_pred HHHHHHHHHHccCchhhhhcccccccccCCch---------h-----HHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cC
Q 022902 143 HPEFLQLCLLAKCYKAGLSVLEDDIYEINLPR---------D-----FFLYCYYGGMIFIGQKRFRKALELLHNVVT-AP 207 (290)
Q Consensus 143 H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~---------~-----~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P 207 (290)
+..+-..+...+.|+.|+....+-+-..+... + ....++.-|.+|..+++|++|..+|+.++. .|
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 261 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE 261 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45566677788889999888877553222100 0 013677889999999999999999999998 67
Q ss_pred cc
Q 022902 208 MS 209 (290)
Q Consensus 208 ~~ 209 (290)
..
T Consensus 262 ~~ 263 (338)
T 2if4_A 262 KN 263 (338)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 206
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.46 E-value=35 Score=36.06 Aligned_cols=60 Identities=20% Similarity=0.296 Sum_probs=45.2
Q ss_pred chhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 139 LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 139 LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais 205 (290)
.+..-..+++.|+..+.|+.|..++. .. + ....- -|.-|++|...++|++|.++|+.+-.
T Consensus 811 ~~~~~~~l~~~l~~~~~~~~~~~l~~--~~--~-~~~~~--~yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 811 ENDLVTELVEKLFLFKQYNACMQLIG--WL--N-SDPIA--VYLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp CSCHHHHHHHHHHHHSCTTHHHHHHH--HS--C-CCHHH--HHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred cchhHHHHHHHHHHhhhHHHHHHHhh--hc--c-CCcHH--HHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 35566788999999999998877542 11 1 11122 27899999999999999999999864
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=46.41 E-value=14 Score=28.26 Aligned_cols=74 Identities=11% Similarity=0.018 Sum_probs=46.5
Q ss_pred ccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHH----HhcHHH
Q 022902 120 RGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG----QKRFRK 195 (290)
Q Consensus 120 ~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~----~k~~~~ 195 (290)
.++..++.|+..=++.. . +-..+..-+.++.|...+.+-. ......=+|.-|.+|.. .+|+++
T Consensus 13 ~A~~~~~~aa~~g~~~a-----~---lg~~y~~g~~~~~A~~~~~~Aa-----~~g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 13 KAIQYYVKACELNEMFG-----C---LSLVSNSQINKQKLFQYLSKAC-----ELNSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHTTCTTH-----H---HHHHTCTTSCHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred HHHHHHHHHHcCCCHhh-----h---HHHHHHcCCCHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHcCCCCCccHHH
Confidence 35566666665432211 1 3344444455566666666654 22344556777888887 899999
Q ss_pred HHHHHHHhhcc
Q 022902 196 ALELLHNVVTA 206 (290)
Q Consensus 196 A~~~l~~ais~ 206 (290)
|.+||+.+...
T Consensus 80 A~~~~~~Aa~~ 90 (138)
T 1klx_A 80 AAQYYSKACGL 90 (138)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 99999999864
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=45.57 E-value=18 Score=34.74 Aligned_cols=57 Identities=5% Similarity=0.026 Sum_probs=44.3
Q ss_pred HHHccCchhhhhcccccccc----c-CCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhcc
Q 022902 150 CLLAKCYKAGLSVLEDDIYE----I-NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA 206 (290)
Q Consensus 150 cL~ak~y~~Al~vl~~~i~~----i-~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~ 206 (290)
.-..+.|+.|+++..+-.-- + +..-+++.-+.-.|.+|..+++|++|..+++.++..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i 380 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG 380 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34567899998887664321 1 125578999999999999999999999999999853
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=45.36 E-value=13 Score=33.81 Aligned_cols=78 Identities=10% Similarity=-0.039 Sum_probs=60.1
Q ss_pred HhhCCCCCCchhhHHHHHHHHHHc-----cCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhh
Q 022902 130 RKIQSSTEHLTTLHPEFLQLCLLA-----KCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVV 204 (290)
Q Consensus 130 ~r~~~~~~~LTs~H~~ll~lcL~a-----k~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ai 204 (290)
..+||+- .--+.|..|-.++..- +..+.|...+++-+ .+++..+..-+++||-..+--++|+++|..+|+.|+
T Consensus 190 leLDP~~-~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL-~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 190 CDLWPSY-QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT-RYCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp HHHCTTH-HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH-HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHhCCCc-ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH-HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3467752 1247888888888884 88889988888876 355444577888888887777899999999999999
Q ss_pred ccCcc
Q 022902 205 TAPMS 209 (290)
Q Consensus 205 s~P~~ 209 (290)
.+|..
T Consensus 268 ~a~p~ 272 (301)
T 3u64_A 268 AIDPE 272 (301)
T ss_dssp HCCGG
T ss_pred cCCCC
Confidence 98764
No 210
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=43.53 E-value=71 Score=32.48 Aligned_cols=122 Identities=12% Similarity=0.135 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCChhhhhhhhHhHHHHHHHH-----------HHhHhh-hccccccHHHHHHHHHhh-------CCCC--
Q 022902 78 LVPIIARFITSCSAEQIRYVPEKFINVCKRY-----------KDQVLL-LEAPIRGVGPMLTAIRKI-------QSST-- 136 (290)
Q Consensus 78 l~~~v~~fl~~f~~~Qlr~a~~~~~~l~~~~-----------~~~~~~-~~~p~~~i~~L~~Ai~r~-------~~~~-- 136 (290)
+.+-+..|+. ..++.++++...|..|.+.- ...+.. ....+.+|..+..++..+ .+..
T Consensus 250 L~~~Ll~~~~-~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 250 LMYSLKSFIA-ITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHH-TCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHc-ccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 4455555554 34455556666666555431 111111 123445777777777542 1111
Q ss_pred -CCchhhHHHH----HHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHh
Q 022902 137 -EHLTTLHPEF----LQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNV 203 (290)
Q Consensus 137 -~~LTs~H~~l----l~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~a 203 (290)
..+++.-..+ ++=|+.-+.|+-|+++-.+.+.-- |.+ +.=.|+.+.+|+.+++|+.|+-.+-.|
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--Pse-F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--LDS-FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSC-HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--chh-hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 0112111122 345778899999999988875322 223 445577899999999999999777665
No 211
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=43.48 E-value=44 Score=36.93 Aligned_cols=90 Identities=13% Similarity=0.146 Sum_probs=41.5
Q ss_pred hHhHHHHHHHHHHhHhhhccccccHHHHHHHHHhhCCCC-CCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhH
Q 022902 98 PEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSST-EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDF 176 (290)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~-~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~ 176 (290)
|+.....++.+. ..+.|..++..+..+++ +|+. +.=..+=.++++.++++ ........+++.- .++ ..+
T Consensus 985 PeeVs~~vKaf~----~aglp~EaieLLEKivl--~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-~~d-~~e- 1054 (1630)
T 1xi4_A 985 PEEVSVTVKAFM----TADLPNELIELLEKIVL--DNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-NYD-APD- 1054 (1630)
T ss_pred HHHhHHHHHHHH----hCCCHHHHHHHHHHHHc--CCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-hcc-HHH-
Confidence 334444444444 34566667777777773 3331 11123334455555555 2233333332211 111 111
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHh
Q 022902 177 FLYCYYGGMIFIGQKRFRKALELLHNV 203 (290)
Q Consensus 177 l~Y~yygG~i~~~~k~~~~A~~~l~~a 203 (290)
.|.|++.++.|++|...|+.+
T Consensus 1055 ------IA~Iai~lglyEEAf~IYkKa 1075 (1630)
T 1xi4_A 1055 ------IANIAISNELFEEAFAIFRKF 1075 (1630)
T ss_pred ------HHHHHHhCCCHHHHHHHHHHc
Confidence 456666666666666666664
No 212
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=42.58 E-value=75 Score=29.58 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHccCchhhhhcccccccc---cCCchhHHHHHHHHHHHHHHHhcHHHHHHHHHHhhccC
Q 022902 141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYE---INLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAP 207 (290)
Q Consensus 141 s~H~~ll~lcL~ak~y~~Al~vl~~~i~~---i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais~P 207 (290)
.+-.-|..+++..+.|..|++.+.+-.-+ +|.....++=+-.--.+|..++++.++...++.|-+++
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 34467889999999999999988774433 34467888889999999999999999999999987654
No 213
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=41.79 E-value=56 Score=30.03 Aligned_cols=78 Identities=8% Similarity=0.000 Sum_probs=38.1
Q ss_pred cccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHH----ccCchhhhhcccccccccCCchhHHHHHHHHHHHHHH---
Q 022902 117 APIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLL----AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG--- 189 (290)
Q Consensus 117 ~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~----ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~--- 189 (290)
.+..++..++.|+.. + -...+..+-.++.. .+.++.|...+.+-+- .....-++.-|.+|..
T Consensus 130 ~~~~A~~~~~~a~~~----~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~-----~~~~~a~~~Lg~~y~~g~g 198 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQ----G--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE-----QGNVWSCNQLGYMYSRGLG 198 (490)
T ss_dssp CHHHHHHHHHHHHHT----T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHHHC----C--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHhcCCC
Confidence 344456666666543 1 13334444445554 5566666666655431 1123334444444444
Q ss_pred -HhcHHHHHHHHHHhhc
Q 022902 190 -QKRFRKALELLHNVVT 205 (290)
Q Consensus 190 -~k~~~~A~~~l~~ais 205 (290)
.+++++|..+|+.++.
T Consensus 199 ~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 199 VERNDAISAQWYRKSAT 215 (490)
T ss_dssp SCCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 5555555555555543
No 214
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=40.93 E-value=23 Score=28.84 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 177 FLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 177 l~Y~yygG~i~~~~k~~~~A~~~l~~ais 205 (290)
..-+|.-|.+|...+++++|.++|+.++.
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 46 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAA 46 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 34466778888888888888888888875
No 215
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=37.12 E-value=1.9e+02 Score=26.21 Aligned_cols=125 Identities=12% Similarity=0.124 Sum_probs=78.3
Q ss_pred hhhhhhhHhHHHHHHHHHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHc--cCchhhhhcccccccc
Q 022902 92 EQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLA--KCYKAGLSVLEDDIYE 169 (290)
Q Consensus 92 ~Qlr~a~~~~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~a--k~y~~Al~vl~~~i~~ 169 (290)
.||-|.+ .|..+...+...+.......+++.....++. ++|. ..|.-+.- +.++.. +.++.++.+++.-+..
T Consensus 45 ~~i~y~~-~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~-~nP~--~ytaWn~R--~~iL~~l~~~l~eEL~~~~~~L~~ 118 (349)
T 3q7a_A 45 VPIMYSE-EYKDAMDYFRAIAAKEEKSERALELTEIIVR-MNPA--HYTVWQYR--FSLLTSLNKSLEDELRLMNEFAVQ 118 (349)
T ss_dssp SCBCCCH-HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH-HCTT--CHHHHHHH--HHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred eeeeeCH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hCch--hHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3554444 5566666665555555566667777666654 5664 45654443 333333 2588899888886632
Q ss_pred cCCchhHHHHHHHHHHHHHHH-h-cHHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHHHHh
Q 022902 170 INLPRDFFLYCYYGGMIFIGQ-K-RFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIH 229 (290)
Q Consensus 170 i~~~~~~l~Y~yygG~i~~~~-k-~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~Ll~ 229 (290)
-+ ....-.++.|.+.-.+ + +++++++++..++. -|-+ ...=.|+.|++-.+-.
T Consensus 119 nP---Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN----y~AW~~R~wvl~~l~~ 174 (349)
T 3q7a_A 119 NL---KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN----YHTWAYLHWLYSHFST 174 (349)
T ss_dssp TC---CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC----HHHHHHHHHHHHHHHH
T ss_pred CC---CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcc
Confidence 22 2355566777777777 7 99999999999997 5653 2222577777766544
No 216
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=36.65 E-value=48 Score=29.90 Aligned_cols=92 Identities=9% Similarity=0.070 Sum_probs=57.9
Q ss_pred HHHhHhhhccccccHHHHHHHHHhhCC-----CCCCchhhHHHHHHHHHHccCchhhhhcccccccccCC-chhHHHHHH
Q 022902 108 YKDQVLLLEAPIRGVGPMLTAIRKIQS-----STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-PRDFFLYCY 181 (290)
Q Consensus 108 ~~~~~~~~~~p~~~i~~L~~Ai~r~~~-----~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~-~~~~l~Y~y 181 (290)
.++.....+++-.+...++.. .+.+| ..+.++-+=...+.++...+.|..|..+++.-.-..+. ....+.|-
T Consensus 142 ~vqi~L~~~r~d~A~k~l~~~-~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln- 219 (310)
T 3mv2_B 142 AIEVALLNNNVSTASTIFDNY-TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN- 219 (310)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-
Confidence 344555667777777777776 45566 23444433333334444445899999888884333332 11223333
Q ss_pred HHHHHHHHHhcHHHHHHHHHHhhc
Q 022902 182 YGGMIFIGQKRFRKALELLHNVVT 205 (290)
Q Consensus 182 ygG~i~~~~k~~~~A~~~l~~ais 205 (290)
+++.+++|++|...|+..+.
T Consensus 220 ----~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 220 ----LHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp ----HHHHHTCHHHHHHHHHHHHS
T ss_pred ----HHHHcCCHHHHHHHHHHHHH
Confidence 89999999999999998776
No 217
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=36.38 E-value=82 Score=28.97 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=9.1
Q ss_pred chhHHHHHHHhcCC
Q 022902 253 SQPYMELVNTYNTG 266 (290)
Q Consensus 253 ~~pY~~la~af~~~ 266 (290)
...+..|+..|..|
T Consensus 318 ~~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 318 VAADYYLGQIYRRG 331 (452)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC
Confidence 34566777777665
No 218
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=31.24 E-value=93 Score=27.57 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=71.0
Q ss_pred HhHHHHHHHHHHhHhhhccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHc---cCchhhhhcccccccccCCchh
Q 022902 99 EKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLA---KCYKAGLSVLEDDIYEINLPRD 175 (290)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~a---k~y~~Al~vl~~~i~~i~~~~~ 175 (290)
+.|..+...+...........+++.....+| .++| +..|.-+.- +.+|.. +.++.++.+.+.-+..-| .
T Consensus 30 ~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L-~~nP--~~~taWn~R--~~~L~~l~~~~~~eeL~~~~~~L~~nP---k 101 (306)
T 3dra_A 30 EDYKQIMGLLLALMKAEEYSERALHITELGI-NELA--SHYTIWIYR--FNILKNLPNRNLYDELDWCEEIALDNE---K 101 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH-HHCT--TCHHHHHHH--HHHHHTCTTSCHHHHHHHHHHHHHHCT---T
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHCc--HHHHHHHHH--HHHHHHcccccHHHHHHHHHHHHHHCc---c
Confidence 4566666666555444444455666665555 4566 445654433 444433 478889888887664222 2
Q ss_pred HHHHHHHHHHHH----HHH---hcHHHHHHHHHHhhc-cCccchhHHHHHHHHHHHHHH
Q 022902 176 FFLYCYYGGMIF----IGQ---KRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVS 226 (290)
Q Consensus 176 ~l~Y~yygG~i~----~~~---k~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~iLv~ 226 (290)
+..-.+|.|.|. ..+ ++|++++++++.++. -|-+ ...=.|+.|++-.
T Consensus 102 ~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn----y~aW~~R~~vl~~ 156 (306)
T 3dra_A 102 NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN----HHVWSYRKWLVDT 156 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Confidence 234455666776 555 789999999999997 6653 2233466776654
No 219
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.96 E-value=67 Score=29.82 Aligned_cols=86 Identities=8% Similarity=-0.118 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhCC--CCCC-chhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHH
Q 022902 122 VGPMLTAIRKIQS--STEH-LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALE 198 (290)
Q Consensus 122 i~~L~~Ai~r~~~--~~~~-LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~ 198 (290)
+.-+...+..... .++. ..-.|..+.+..+..|.++.|++.+.+-...-.+..+.+..+..--.+++..++|..|..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 4555555554421 1222 445789999999999999999999988543334467889999999999999999999999
Q ss_pred HHHHhhccC
Q 022902 199 LLHNVVTAP 207 (290)
Q Consensus 199 ~l~~ais~P 207 (290)
.+..+-+..
T Consensus 190 ~~~ka~~~~ 198 (429)
T 4b4t_R 190 KLEAVNSMI 198 (429)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999987643
No 220
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=29.51 E-value=27 Score=19.55 Aligned_cols=14 Identities=21% Similarity=0.560 Sum_probs=10.5
Q ss_pred chhHHHHHHHHHHH
Q 022902 210 SINAIAVEAYKKYI 223 (290)
Q Consensus 210 ~~s~i~veAyKK~i 223 (290)
.+.--|+.|+|||+
T Consensus 9 evqlemitawkkfv 22 (28)
T 1nwd_B 9 EVQLEMITAWKKFV 22 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34556888999986
No 221
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=28.84 E-value=2.3e+02 Score=25.85 Aligned_cols=13 Identities=8% Similarity=0.365 Sum_probs=8.7
Q ss_pred hhHHHHHHHhcCC
Q 022902 254 QPYMELVNTYNTG 266 (290)
Q Consensus 254 ~pY~~la~af~~~ 266 (290)
..+..|+..|..|
T Consensus 355 ~A~~~Lg~~y~~G 367 (452)
T 3e4b_A 355 SADFAIAQLFSQG 367 (452)
T ss_dssp THHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhC
Confidence 3566777777765
No 222
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=28.80 E-value=1.8e+02 Score=24.69 Aligned_cols=92 Identities=21% Similarity=0.269 Sum_probs=58.9
Q ss_pred ccHHHHHHHHHhhCCCCCCchhhHHH--------HHHHHHHccCchhhhhcccccccccCC-----------------ch
Q 022902 120 RGVGPMLTAIRKIQSSTEHLTTLHPE--------FLQLCLLAKCYKAGLSVLEDDIYEINL-----------------PR 174 (290)
Q Consensus 120 ~~i~~L~~Ai~r~~~~~~~LTs~H~~--------ll~lcL~ak~y~~Al~vl~~~i~~i~~-----------------~~ 174 (290)
--+.||.+|+--++.-..-.+.+|-. -+-.|++.|.++.|..++++-+-+-++ +-
T Consensus 89 ~~lTPLESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H 168 (211)
T 3bqo_A 89 ERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFH 168 (211)
T ss_dssp TTCCHHHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTC
T ss_pred CCCChHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCc
Confidence 45899999999887654444566643 255799999999999999886544321 44
Q ss_pred hHHHHHHHHHHHHHHHhcHHHHHHHHHHhhc-cCccchhHHHHHHHHHH
Q 022902 175 DFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKY 222 (290)
Q Consensus 175 ~~l~Y~yygG~i~~~~k~~~~A~~~l~~ais-~P~~~~s~i~veAyKK~ 222 (290)
.++.+|=|.-|+ ++=..+++..++ .|. .+.++|.+|-
T Consensus 169 ~~lqnFSy~~~~-------~kik~fve~~~~e~~~----~FLl~aA~Kv 206 (211)
T 3bqo_A 169 SFFQHFSYNHMM-------EKIKSYVNYVLSEKSS----TFLMKAAAKV 206 (211)
T ss_dssp HHHHHSCHHHHH-------HHHHHHHHHHHHHHTT----SHHHHHHHHH
T ss_pred HHHHHccHHHHH-------HHHHHHHHHHhcccCc----HHHHHHHHHH
Confidence 677777777554 333467777775 222 2455555553
No 223
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=27.89 E-value=2.1e+02 Score=26.19 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=37.4
Q ss_pred HHHHHHHHHc-cCchhhhhccc-ccccccCCchhHHHH------------HHHHHHHHHHHhcHHHHHHHHHHhh
Q 022902 144 PEFLQLCLLA-KCYKAGLSVLE-DDIYEINLPRDFFLY------------CYYGGMIFIGQKRFRKALELLHNVV 204 (290)
Q Consensus 144 ~~ll~lcL~a-k~y~~Al~vl~-~~i~~i~~~~~~l~Y------------~yygG~i~~~~k~~~~A~~~l~~ai 204 (290)
..+.|+|..+ ..|+.|...+. ++. ++. +...| +||-|+..-..+++-+|.-+|+.|.
T Consensus 232 ~liAkLa~~~~~~Y~~A~~~l~~~~~--~~~--~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~ 302 (380)
T 3c3r_A 232 AIIAKLANQAADYFGDAFKQCQYKDT--LPK--EVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAA 302 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCC--SCT--THHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHccccc--ccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 5677777775 55788888877 222 221 11111 4556777778888888888888875
No 224
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=27.30 E-value=59 Score=30.97 Aligned_cols=99 Identities=6% Similarity=-0.059 Sum_probs=40.8
Q ss_pred hccccccHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccc----cccCC-------ch------hHH
Q 022902 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDI----YEINL-------PR------DFF 177 (290)
Q Consensus 115 ~~~p~~~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i----~~i~~-------~~------~~l 177 (290)
.+.-.-++..++.+.....+ + .+-+.|+.++-+.+.+..+..+++.|= ..+.. .. +..
T Consensus 74 ~g~~EeAi~yl~~ark~~~~-~----~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 74 SGNWEELVKYLQMARKKARE-S----YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ----------------------------------------CHHHHTTTTTCC----------------CTTTHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCcc-c----hhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 34444466666666654221 2 234567777788888888888888751 11110 11 123
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHH
Q 022902 178 LYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLI 228 (290)
Q Consensus 178 ~Y~yygG~i~~~~k~~~~A~~~l~~ais~P~~~~s~i~veAyKK~iLv~Ll 228 (290)
.++.--|-++..+++|++|.++++.+- -+++||.++-++.-
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKAN----------STRTWKEVCFACVD 189 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHHT----------CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHcC----------CchhHHHHHHHHHH
Confidence 455566788888999999999999882 23567776666644
No 225
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=27.08 E-value=2.4e+02 Score=25.22 Aligned_cols=83 Identities=6% Similarity=-0.053 Sum_probs=61.4
Q ss_pred cHHHHHHHHHhhCCCCCCchhhHHHHHHHHHHccCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcHHHHHHHH
Q 022902 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELL 200 (290)
Q Consensus 121 ~i~~L~~Ai~r~~~~~~~LTs~H~~ll~lcL~ak~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~~~A~~~l 200 (290)
++..+...+.. + .++ ...+..+.+.....+.++.|+..+.+-|- .++..+.++=....+.|+..++|.+.|...|
T Consensus 85 a~~~l~~l~~~-~-~~~--~~~~~~la~i~~~~g~~eeAL~~l~~~i~-~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 NIEELENLLKD-K-QNS--PYELYLLATAQAILGDLDKSLETCVEGID-NDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp CCHHHHHTTTT-S-CCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHT-SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhc-C-CCC--cHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45555555432 1 122 33457888999999999999999988753 2212478899999999999999999999999
Q ss_pred HHhhccCc
Q 022902 201 HNVVTAPM 208 (290)
Q Consensus 201 ~~ais~P~ 208 (290)
+..-.++-
T Consensus 160 ~~~~~~~~ 167 (310)
T 3mv2_B 160 DNYTNAIE 167 (310)
T ss_dssp HHHHHHSC
T ss_pred HHHHhcCc
Confidence 99877543
No 226
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=23.72 E-value=2.1e+02 Score=27.41 Aligned_cols=29 Identities=10% Similarity=0.072 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHh-cHHHHHHHHHHhhc-cCc
Q 022902 180 CYYGGMIFIGQK-RFRKALELLHNVVT-APM 208 (290)
Q Consensus 180 ~yygG~i~~~~k-~~~~A~~~l~~ais-~P~ 208 (290)
++|.|.+...++ +|++|+++++.+|. .|.
T Consensus 146 W~~R~~~l~~l~~~~~~el~~~~~~I~~~p~ 176 (567)
T 1dce_A 146 WDYRRFVAAQAAVAPAEELAFTDSLITRNFS 176 (567)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence 344555555555 55555555555554 444
No 227
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=21.39 E-value=78 Score=28.09 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=57.3
Q ss_pred HHHHHHHHccCch-hhhhcccccccccCCchhHHHHHHHHHHHHHHHh--cHHHHHHHHHHhhc-cCccchhHHHHHHHH
Q 022902 145 EFLQLCLLAKCYK-AGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK--RFRKALELLHNVVT-APMSSINAIAVEAYK 220 (290)
Q Consensus 145 ~ll~lcL~ak~y~-~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k--~~~~A~~~l~~ais-~P~~~~s~i~veAyK 220 (290)
..++..+..+.|. .|+...++-|. ++ -++..-.+|.|.+...++ ++++|+++++.++. -|...- +=-|+
T Consensus 37 ~~~~a~~~~~e~s~~aL~~t~~~L~-~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~----aW~~R 109 (306)
T 3dra_A 37 GLLLALMKAEEYSERALHITELGIN-EL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ----IWNYR 109 (306)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHH-HC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH----HHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHH-HC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH----HHHHH
Confidence 3455566777775 67777777653 32 256777889999999999 99999999999998 787532 22478
Q ss_pred HHHHHHHHhc
Q 022902 221 KYILVSLIHH 230 (290)
Q Consensus 221 K~iLv~Ll~~ 230 (290)
+|+|-.++..
T Consensus 110 ~~iL~~~~~~ 119 (306)
T 3dra_A 110 QLIIGQIMEL 119 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888666543
No 228
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=21.15 E-value=80 Score=25.48 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=34.0
Q ss_pred cCchhhhhcccccccccCCchhHHHHHHHHHHHHHHHhcH----------HHHHHHHHHhhc-cCcc
Q 022902 154 KCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF----------RKALELLHNVVT-APMS 209 (290)
Q Consensus 154 k~y~~Al~vl~~~i~~i~~~~~~l~Y~yygG~i~~~~k~~----------~~A~~~l~~ais-~P~~ 209 (290)
++|+.|++..++.+- .+ +.+.-.|+-+|+ ++..++++ ++|..+|+.||. -|..
T Consensus 16 ~~feeA~~~~~~Ai~-l~-P~~aea~~n~G~-~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~ 79 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK-SN-PLDADNLTRWGG-VLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK 79 (158)
T ss_dssp HHHHHHHHHHHHHHH-HC-TTCHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHH-HC-CCCHHHHHHHHH-HHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc
Confidence 345555555555442 22 344445555555 88888765 599999999998 7874
No 229
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=20.54 E-value=2.8e+02 Score=20.94 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=40.7
Q ss_pred HHHHHHHHhhcCChhcHHHHHHHHHHhHHHHHhhhhhhhhhhhhcCcchhHHHHHHHHHHhhhcc
Q 022902 5 ENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCS 69 (290)
Q Consensus 5 ~~~~~~i~~~~~s~~~~~~L~~~l~~~~~~l~~~~~~~~~~L~~ldp~~~sl~~L~vL~a~~~~~ 69 (290)
+.|...+++|+++.++...+....-.+.+--..-...+..-+....| .+=|+.||++.-.+...
T Consensus 7 ~~l~~~L~~L~~s~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~-~~KL~~LYLindIl~ns 70 (135)
T 4fu3_A 7 SALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKS-NRKLTFLYLANDVIQNS 70 (135)
T ss_dssp HHHHHHHHHCCSSTTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHH
Confidence 67788888898888899998887655432111112222233333344 57799999999887543
Done!