Query 022904
Match_columns 290
No_of_seqs 108 out of 1191
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:00:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 7.2E-52 1.6E-56 373.7 27.5 253 3-273 50-310 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 9.9E-52 2.1E-56 367.0 25.3 265 2-278 60-331 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 1.4E-51 2.9E-56 359.7 23.0 221 3-276 45-268 (280)
4 TIGR01293 Kv_beta voltage-depe 100.0 5.1E-49 1.1E-53 356.9 25.9 256 3-270 46-316 (317)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 1.7E-48 3.6E-53 357.3 26.7 269 3-282 60-342 (346)
6 PF00248 Aldo_ket_red: Aldo/ke 100.0 3.1E-48 6.7E-53 346.3 21.8 245 3-271 34-282 (283)
7 PRK10625 tas putative aldo-ket 100.0 1.9E-47 4.2E-52 350.5 27.0 254 3-272 47-339 (346)
8 PLN02587 L-galactose dehydroge 100.0 2.8E-47 6.1E-52 345.1 27.1 242 3-273 48-301 (314)
9 PRK11172 dkgB 2,5-diketo-D-glu 100.0 2E-46 4.3E-51 332.1 24.3 219 3-275 33-255 (267)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 3.6E-46 7.8E-51 333.3 24.9 235 3-269 46-284 (285)
11 KOG1577 Aldo/keto reductase fa 100.0 5.8E-46 1.2E-50 324.5 20.6 225 3-274 45-287 (300)
12 PRK10376 putative oxidoreducta 100.0 3.4E-44 7.4E-49 321.4 25.0 221 3-272 57-288 (290)
13 COG4989 Predicted oxidoreducta 100.0 1.4E-44 3.1E-49 303.7 19.6 233 2-271 47-292 (298)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 6.5E-43 1.4E-47 310.7 22.4 217 3-272 45-262 (275)
15 PRK14863 bifunctional regulato 100.0 1E-42 2.2E-47 311.6 20.5 228 3-268 49-278 (292)
16 COG1453 Predicted oxidoreducta 100.0 4.5E-39 9.7E-44 284.4 18.9 230 3-278 51-291 (391)
17 KOG1576 Predicted oxidoreducta 100.0 4.8E-38 1E-42 266.2 20.9 247 3-281 71-333 (342)
18 KOG3023 Glutamate-cysteine lig 97.9 3.5E-05 7.6E-10 65.6 6.7 72 83-155 155-227 (285)
19 PF07021 MetW: Methionine bios 91.3 0.72 1.6E-05 38.6 6.4 106 53-161 61-172 (193)
20 PRK10558 alpha-dehydro-beta-de 85.8 9 0.0002 33.7 9.9 67 90-157 10-78 (256)
21 cd01965 Nitrogenase_MoFe_beta_ 84.0 39 0.00084 32.0 16.2 106 15-123 66-186 (428)
22 PRK02910 light-independent pro 83.9 44 0.00096 32.6 14.9 102 8-118 64-186 (519)
23 PRK14476 nitrogenase molybdenu 82.4 34 0.00075 32.7 13.1 109 7-121 72-197 (455)
24 cd00739 DHPS DHPS subgroup of 82.0 15 0.00033 32.2 9.8 102 47-155 21-127 (257)
25 cd03174 DRE_TIM_metallolyase D 81.8 10 0.00022 33.0 8.7 106 46-155 15-135 (265)
26 cd01973 Nitrogenase_VFe_beta_l 81.4 52 0.0011 31.5 16.2 106 7-118 66-186 (454)
27 PRK10128 2-keto-3-deoxy-L-rham 80.8 21 0.00046 31.6 10.3 67 90-157 9-77 (267)
28 cd01974 Nitrogenase_MoFe_beta 79.8 57 0.0012 31.0 14.9 110 7-122 65-190 (435)
29 PF00148 Oxidored_nitro: Nitro 79.5 37 0.00079 31.6 12.1 137 14-157 58-226 (398)
30 TIGR03239 GarL 2-dehydro-3-deo 79.2 21 0.00045 31.3 9.6 65 92-157 5-71 (249)
31 PLN02540 methylenetetrahydrofo 79.0 64 0.0014 31.9 13.7 99 46-150 69-197 (565)
32 COG1140 NarY Nitrate reductase 77.2 1.5 3.3E-05 40.3 1.9 56 96-151 263-318 (513)
33 TIGR01862 N2-ase-Ialpha nitrog 75.1 78 0.0017 30.2 14.0 103 14-122 101-220 (443)
34 COG2355 Zn-dependent dipeptida 73.5 43 0.00093 30.4 10.1 29 238-268 270-299 (313)
35 PF00809 Pterin_bind: Pterin b 72.9 12 0.00027 31.7 6.4 100 50-157 19-125 (210)
36 PF07994 NAD_binding_5: Myo-in 72.4 15 0.00033 33.0 7.0 145 49-248 131-283 (295)
37 COG0135 TrpF Phosphoribosylant 72.3 26 0.00057 29.8 8.1 82 60-152 18-102 (208)
38 PRK13352 thiamine biosynthesis 71.7 20 0.00043 33.7 7.7 120 84-252 121-246 (431)
39 PRK13796 GTPase YqeH; Provisio 71.6 31 0.00067 32.0 9.2 86 30-117 96-181 (365)
40 PRK14478 nitrogenase molybdenu 71.5 60 0.0013 31.3 11.4 103 14-122 103-220 (475)
41 PRK05692 hydroxymethylglutaryl 71.5 36 0.00077 30.5 9.2 106 47-155 23-140 (287)
42 PRK14461 ribosomal RNA large s 70.3 52 0.0011 30.6 10.1 88 70-159 231-352 (371)
43 PRK01222 N-(5'-phosphoribosyl) 69.5 30 0.00065 29.4 8.0 84 60-152 19-104 (210)
44 TIGR01278 DPOR_BchB light-inde 69.0 51 0.0011 32.1 10.4 98 14-118 69-186 (511)
45 TIGR03597 GTPase_YqeH ribosome 68.8 43 0.00094 30.9 9.5 86 30-117 90-175 (360)
46 PLN02746 hydroxymethylglutaryl 68.6 57 0.0012 30.1 10.0 101 50-154 67-181 (347)
47 PRK14477 bifunctional nitrogen 68.3 1.4E+02 0.0031 31.4 14.0 110 7-122 551-674 (917)
48 cd03466 Nitrogenase_NifN_2 Nit 68.1 1.1E+02 0.0024 29.0 14.8 106 14-122 68-184 (429)
49 TIGR01378 thi_PPkinase thiamin 68.0 73 0.0016 26.8 11.1 40 216-255 71-110 (203)
50 TIGR02311 HpaI 2,4-dihydroxyhe 68.0 74 0.0016 27.8 10.3 66 90-156 3-70 (249)
51 PF14871 GHL6: Hypothetical gl 67.6 14 0.00031 28.9 5.2 25 134-158 43-67 (132)
52 cd00537 MTHFR Methylenetetrahy 66.9 90 0.0019 27.5 12.1 99 46-150 69-188 (274)
53 TIGR01861 ANFD nitrogenase iro 66.6 1.3E+02 0.0029 29.3 14.5 105 14-123 111-232 (513)
54 cd00423 Pterin_binding Pterin 66.4 69 0.0015 28.0 9.9 103 47-156 21-128 (258)
55 PRK09613 thiH thiamine biosynt 66.3 1.3E+02 0.0028 29.0 12.9 108 47-157 115-241 (469)
56 TIGR01283 nifE nitrogenase mol 66.1 1.3E+02 0.0027 28.8 14.4 103 14-122 105-226 (456)
57 PRK07328 histidinol-phosphatas 65.5 91 0.002 27.3 10.6 64 89-152 145-225 (269)
58 PF01175 Urocanase: Urocanase; 65.4 46 0.001 32.2 8.8 103 12-130 138-258 (546)
59 PRK13753 dihydropteroate synth 65.0 1E+02 0.0022 27.5 10.6 102 47-157 22-128 (279)
60 PRK13958 N-(5'-phosphoribosyl) 63.5 25 0.00053 29.8 6.3 68 59-130 16-84 (207)
61 cd01966 Nitrogenase_NifN_1 Nit 63.5 1.4E+02 0.0029 28.3 16.5 104 8-117 62-178 (417)
62 cd01948 EAL EAL domain. This d 62.4 65 0.0014 27.0 8.9 117 32-154 82-208 (240)
63 PRK00730 rnpA ribonuclease P; 62.1 47 0.001 26.3 7.1 63 30-96 46-110 (138)
64 PRK06424 transcription factor; 61.4 29 0.00064 27.7 6.0 29 201-229 82-110 (144)
65 TIGR01496 DHPS dihydropteroate 61.2 1.1E+02 0.0025 26.7 11.0 100 47-155 20-125 (257)
66 CHL00076 chlB photochlorophyll 60.2 1.7E+02 0.0038 28.5 15.0 99 14-118 69-191 (513)
67 TIGR00676 fadh2 5,10-methylene 60.0 1.2E+02 0.0027 26.7 15.1 105 46-161 69-192 (272)
68 TIGR02931 anfK_nitrog Fe-only 59.8 1.7E+02 0.0036 28.1 15.4 109 7-121 72-197 (461)
69 TIGR01212 radical SAM protein, 59.6 1.3E+02 0.0029 26.9 11.5 71 41-116 85-157 (302)
70 PRK07535 methyltetrahydrofolat 59.5 1.2E+02 0.0027 26.6 12.0 100 47-155 22-123 (261)
71 cd04728 ThiG Thiazole synthase 58.6 1.3E+02 0.0028 26.4 13.3 107 44-153 70-180 (248)
72 cd03319 L-Ala-DL-Glu_epimerase 58.1 40 0.00086 30.4 7.0 73 87-160 217-291 (316)
73 cd01967 Nitrogenase_MoFe_alpha 57.4 84 0.0018 29.3 9.4 98 15-118 72-184 (406)
74 PRK00208 thiG thiazole synthas 57.0 1.4E+02 0.0029 26.3 13.4 107 44-153 70-180 (250)
75 COG1179 Dinucleotide-utilizing 56.9 85 0.0018 27.5 8.3 17 138-154 136-152 (263)
76 TIGR00190 thiC thiamine biosyn 56.6 1.8E+02 0.0039 27.5 12.6 86 45-152 135-220 (423)
77 cd01971 Nitrogenase_VnfN_like 56.4 95 0.0021 29.4 9.6 104 14-124 70-191 (427)
78 PLN02363 phosphoribosylanthran 55.8 39 0.00085 29.7 6.4 76 48-131 56-132 (256)
79 TIGR01182 eda Entner-Doudoroff 55.7 53 0.0011 27.9 6.9 88 48-153 18-106 (204)
80 TIGR00381 cdhD CO dehydrogenas 55.6 1.8E+02 0.0039 27.2 12.6 104 50-160 128-252 (389)
81 PRK13352 thiamine biosynthesis 55.3 1.9E+02 0.0041 27.4 12.7 86 45-152 138-223 (431)
82 cd03315 MLE_like Muconate lact 55.0 54 0.0012 28.6 7.2 73 87-160 169-243 (265)
83 TIGR03822 AblA_like_2 lysine-2 54.5 1.5E+02 0.0032 26.9 10.1 130 17-153 123-263 (321)
84 PRK14464 ribosomal RNA large s 54.5 1.8E+02 0.0039 26.8 12.4 77 83-159 225-317 (344)
85 PRK05414 urocanate hydratase; 54.4 34 0.00074 33.1 6.0 103 12-130 148-268 (556)
86 PRK06015 keto-hydroxyglutarate 54.4 51 0.0011 27.9 6.6 88 48-153 14-102 (201)
87 TIGR01228 hutU urocanate hydra 54.3 33 0.00071 33.0 5.8 103 12-130 139-259 (545)
88 cd01968 Nitrogenase_NifE_I Nit 54.0 1.9E+02 0.0042 27.1 16.6 104 14-123 70-188 (410)
89 cd00308 enolase_like Enolase-s 53.9 1.3E+02 0.0027 25.6 9.2 87 68-160 120-208 (229)
90 TIGR00190 thiC thiamine biosyn 53.8 43 0.00092 31.4 6.4 117 85-253 122-244 (423)
91 PF01081 Aldolase: KDPG and KH 53.0 52 0.0011 27.7 6.4 87 49-153 19-106 (196)
92 TIGR02932 vnfK_nitrog V-contai 52.9 2.2E+02 0.0047 27.4 15.9 110 7-122 69-195 (457)
93 PRK01313 rnpA ribonuclease P; 52.3 87 0.0019 24.4 7.1 63 30-95 47-113 (129)
94 TIGR00677 fadh2_euk methylenet 52.3 1.7E+02 0.0037 26.0 16.1 106 46-161 70-196 (281)
95 PRK08392 hypothetical protein; 52.1 1.4E+02 0.0031 25.1 12.0 82 65-153 86-179 (215)
96 cd01981 Pchlide_reductase_B Pc 51.7 1.2E+02 0.0026 28.7 9.4 108 9-123 65-196 (430)
97 PRK04390 rnpA ribonuclease P; 51.7 96 0.0021 23.8 7.3 65 30-96 44-110 (120)
98 cd00740 MeTr MeTr subgroup of 51.5 1.7E+02 0.0036 25.6 11.2 103 46-156 22-127 (252)
99 cd07948 DRE_TIM_HCS Saccharomy 51.0 1.7E+02 0.0038 25.7 10.5 100 47-154 19-131 (262)
100 cd07944 DRE_TIM_HOA_like 4-hyd 50.9 1.1E+02 0.0024 26.9 8.5 104 46-153 16-127 (266)
101 PF00682 HMGL-like: HMGL-like 50.6 92 0.002 26.6 7.9 98 47-151 11-124 (237)
102 PRK03459 rnpA ribonuclease P; 50.6 92 0.002 24.0 7.0 64 30-96 48-114 (122)
103 cd07939 DRE_TIM_NifV Streptomy 49.7 1.8E+02 0.0038 25.4 9.8 98 47-152 17-127 (259)
104 TIGR02026 BchE magnesium-proto 49.6 2.5E+02 0.0055 27.1 12.0 71 83-155 224-304 (497)
105 PRK02866 cyanate hydratase; Va 49.4 41 0.0009 26.9 4.9 63 206-270 8-70 (147)
106 PRK00499 rnpA ribonuclease P; 49.4 1E+02 0.0022 23.3 7.0 64 30-96 38-104 (114)
107 TIGR03822 AblA_like_2 lysine-2 49.4 2E+02 0.0044 26.0 11.4 93 68-161 137-240 (321)
108 PRK15408 autoinducer 2-binding 49.0 2.1E+02 0.0045 26.0 10.4 86 30-125 22-111 (336)
109 PRK03031 rnpA ribonuclease P; 48.6 1E+02 0.0022 23.6 7.0 65 30-96 47-114 (122)
110 cd03316 MR_like Mandelate race 47.2 82 0.0018 28.8 7.4 68 87-155 229-298 (357)
111 cd07943 DRE_TIM_HOA 4-hydroxy- 47.2 89 0.0019 27.3 7.3 104 47-154 19-131 (263)
112 TIGR01285 nifN nitrogenase mol 46.6 2.6E+02 0.0057 26.5 16.1 110 7-122 71-197 (432)
113 PRK09856 fructoselysine 3-epim 46.3 1.4E+02 0.0031 25.8 8.6 20 138-157 93-112 (275)
114 cd03322 rpsA The starvation se 45.7 1E+02 0.0022 28.4 7.8 84 68-157 189-274 (361)
115 cd08319 Death_RAIDD Death doma 45.5 26 0.00057 25.1 3.0 69 50-126 10-80 (83)
116 PRK11613 folP dihydropteroate 45.3 1.8E+02 0.0038 26.1 8.8 100 48-155 36-140 (282)
117 PF05368 NmrA: NmrA-like famil 45.2 87 0.0019 26.4 6.8 85 66-160 21-106 (233)
118 PRK13803 bifunctional phosphor 45.1 1.3E+02 0.0028 30.1 8.8 96 48-152 12-108 (610)
119 PRK14463 ribosomal RNA large s 44.7 2.1E+02 0.0045 26.4 9.5 77 83-159 233-325 (349)
120 PRK04452 acetyl-CoA decarbonyl 44.7 2.5E+02 0.0054 25.6 13.3 93 60-157 85-184 (319)
121 PF11242 DUF2774: Protein of u 44.7 31 0.00066 23.2 2.9 24 206-229 14-37 (63)
122 PRK01492 rnpA ribonuclease P; 44.0 1.4E+02 0.0031 22.8 7.1 62 31-94 47-114 (118)
123 COG1564 THI80 Thiamine pyropho 43.6 53 0.0011 28.1 5.0 42 214-255 74-115 (212)
124 PRK12410 glutamylglutaminyl-tR 43.5 94 0.002 29.6 7.2 91 12-116 15-105 (433)
125 PRK07945 hypothetical protein; 43.1 2.6E+02 0.0057 25.5 10.1 78 70-152 195-288 (335)
126 COG0820 Predicted Fe-S-cluster 43.1 2.2E+02 0.0049 26.3 9.3 88 70-159 215-330 (349)
127 PRK15108 biotin synthase; Prov 42.5 2.7E+02 0.0059 25.5 12.4 110 47-160 76-196 (345)
128 PRK06740 histidinol-phosphatas 42.0 2.1E+02 0.0046 26.1 9.1 99 54-153 156-289 (331)
129 PRK14459 ribosomal RNA large s 41.7 3E+02 0.0065 25.7 10.1 90 70-159 241-359 (373)
130 PRK09427 bifunctional indole-3 41.3 1.6E+02 0.0034 28.4 8.4 73 48-131 266-339 (454)
131 TIGR00284 dihydropteroate synt 41.2 3.5E+02 0.0076 26.4 11.3 94 50-155 165-258 (499)
132 PRK04820 rnpA ribonuclease P; 41.1 1.8E+02 0.0039 23.2 7.5 66 30-97 48-115 (145)
133 PRK13347 coproporphyrinogen II 40.8 3.3E+02 0.0071 26.0 12.3 49 107-157 117-171 (453)
134 PRK14466 ribosomal RNA large s 40.5 3E+02 0.0064 25.4 9.8 89 70-159 210-325 (345)
135 TIGR00188 rnpA ribonuclease P 40.3 1.5E+02 0.0033 21.9 6.9 62 30-94 41-104 (105)
136 PRK12558 glutamyl-tRNA synthet 40.1 95 0.0021 29.7 6.7 98 4-115 6-107 (445)
137 PRK06552 keto-hydroxyglutarate 39.9 1.1E+02 0.0025 26.0 6.6 88 48-153 23-114 (213)
138 PRK07003 DNA polymerase III su 39.9 3.1E+02 0.0067 28.5 10.4 60 48-110 100-161 (830)
139 COG2102 Predicted ATPases of P 39.9 87 0.0019 26.9 5.7 99 83-220 75-177 (223)
140 cd03770 SR_TndX_transposase Se 39.6 57 0.0012 25.5 4.4 53 53-105 54-106 (140)
141 PRK00396 rnpA ribonuclease P; 39.3 1.5E+02 0.0033 23.1 6.7 63 31-96 47-112 (130)
142 smart00052 EAL Putative diguan 39.2 1.9E+02 0.0042 24.0 8.1 100 50-154 99-209 (241)
143 PF02638 DUF187: Glycosyl hydr 38.9 61 0.0013 29.3 5.1 87 135-221 70-159 (311)
144 PF07287 DUF1446: Protein of u 38.9 1.5E+02 0.0032 27.6 7.5 67 86-155 11-78 (362)
145 PRK15072 bifunctional D-altron 38.8 1.8E+02 0.004 27.2 8.5 71 86-157 245-317 (404)
146 PRK14895 gltX glutamyl-tRNA sy 38.6 1.5E+02 0.0033 28.9 7.9 100 3-115 7-110 (513)
147 COG0731 Fe-S oxidoreductases [ 38.6 3E+02 0.0065 24.8 9.2 94 17-128 96-210 (296)
148 cd03325 D-galactonate_dehydrat 38.1 2E+02 0.0042 26.4 8.4 95 55-155 188-285 (352)
149 TIGR01928 menC_lowGC/arch o-su 38.0 1.5E+02 0.0032 26.9 7.4 86 69-160 199-286 (324)
150 PF01244 Peptidase_M19: Membra 38.0 1.4E+02 0.003 27.1 7.3 144 83-267 159-309 (320)
151 PRK08195 4-hyroxy-2-oxovalerat 37.7 2.9E+02 0.0063 25.3 9.3 101 46-154 21-134 (337)
152 TIGR02090 LEU1_arch isopropylm 37.7 2.3E+02 0.0049 26.2 8.7 99 46-152 18-129 (363)
153 PF13378 MR_MLE_C: Enolase C-t 37.7 55 0.0012 24.2 3.9 54 105-160 3-57 (111)
154 TIGR01502 B_methylAsp_ase meth 37.6 2.4E+02 0.0051 26.7 8.9 72 85-157 279-357 (408)
155 PRK14457 ribosomal RNA large s 37.4 3.3E+02 0.0072 25.0 11.1 94 66-159 211-330 (345)
156 COG2987 HutU Urocanate hydrata 37.4 80 0.0017 30.2 5.5 110 12-130 148-268 (561)
157 TIGR02660 nifV_homocitr homoci 37.3 3.4E+02 0.0073 25.1 9.8 99 46-152 19-130 (365)
158 PLN03233 putative glutamate-tR 37.2 1.3E+02 0.0027 29.6 7.1 59 48-115 58-116 (523)
159 TIGR03217 4OH_2_O_val_ald 4-hy 37.1 3.3E+02 0.0071 24.9 9.6 101 46-153 20-132 (333)
160 cd08613 GDPD_GDE4_like_1 Glyce 37.1 3.2E+02 0.007 24.8 12.0 123 30-168 153-284 (309)
161 cd04742 NPD_FabD 2-Nitropropan 36.9 1.6E+02 0.0034 28.0 7.5 90 60-156 7-103 (418)
162 PF00749 tRNA-synt_1c: tRNA sy 36.6 88 0.0019 28.4 5.7 63 48-118 48-110 (314)
163 TIGR02026 BchE magnesium-proto 36.6 4E+02 0.0087 25.7 11.9 102 47-154 222-342 (497)
164 PRK00164 moaA molybdenum cofac 36.5 3.2E+02 0.0069 24.6 9.5 70 83-152 143-227 (331)
165 PRK14456 ribosomal RNA large s 36.3 2.2E+02 0.0047 26.5 8.3 77 83-159 261-353 (368)
166 cd01980 Chlide_reductase_Y Chl 36.1 3.7E+02 0.0081 25.3 14.7 100 15-123 76-188 (416)
167 TIGR00048 radical SAM enzyme, 36.1 3.5E+02 0.0077 25.0 11.2 89 71-159 219-333 (355)
168 PF05690 ThiG: Thiazole biosyn 36.1 3E+02 0.0064 24.1 11.1 106 46-154 72-181 (247)
169 COG4943 Predicted signal trans 36.1 3.6E+02 0.0077 26.2 9.6 120 30-154 350-477 (524)
170 cd01976 Nitrogenase_MoFe_alpha 35.8 3.8E+02 0.0083 25.3 18.7 103 14-122 82-201 (421)
171 TIGR00673 cynS cyanate hydrata 35.5 80 0.0017 25.4 4.6 63 206-270 11-73 (150)
172 TIGR01428 HAD_type_II 2-haloal 35.3 1.1E+02 0.0024 25.0 5.9 96 52-150 61-164 (198)
173 PRK14455 ribosomal RNA large s 35.2 2.3E+02 0.0051 26.1 8.4 89 71-159 223-337 (356)
174 cd03318 MLE Muconate Lactonizi 35.1 2.7E+02 0.0059 25.5 8.9 101 53-161 201-303 (365)
175 cd07995 TPK Thiamine pyrophosp 35.1 72 0.0016 26.9 4.6 41 215-255 74-114 (208)
176 PRK14460 ribosomal RNA large s 35.0 3.7E+02 0.008 24.8 10.2 77 83-159 240-332 (354)
177 PRK12331 oxaloacetate decarbox 34.8 2.1E+02 0.0046 27.4 8.2 101 47-153 23-141 (448)
178 COG0773 MurC UDP-N-acetylmuram 34.8 47 0.001 31.8 3.7 29 211-239 112-141 (459)
179 COG0635 HemN Coproporphyrinoge 34.4 95 0.0021 29.4 5.7 60 48-109 202-276 (416)
180 PRK08609 hypothetical protein; 34.4 4.2E+02 0.0091 26.2 10.4 14 139-152 483-496 (570)
181 PF02219 MTHFR: Methylenetetra 34.3 2.9E+02 0.0062 24.5 8.6 102 46-153 81-205 (287)
182 cd03327 MR_like_2 Mandelate ra 34.0 2.6E+02 0.0057 25.4 8.5 69 86-155 210-280 (341)
183 PF04263 TPK_catalytic: Thiami 34.0 90 0.0019 24.1 4.6 40 216-255 69-108 (123)
184 PRK08776 cystathionine gamma-s 33.8 1.9E+02 0.0041 27.2 7.6 77 84-160 110-187 (405)
185 PF03102 NeuB: NeuB family; I 33.7 2.1E+02 0.0046 24.9 7.4 19 138-157 59-77 (241)
186 PLN02444 HMP-P synthase 33.6 2.6E+02 0.0056 27.7 8.3 91 85-218 282-376 (642)
187 TIGR02534 mucon_cyclo muconate 33.3 2.5E+02 0.0054 25.8 8.3 100 54-161 201-302 (368)
188 cd06831 PLPDE_III_ODC_like_AZI 32.7 2.4E+02 0.0052 26.4 8.1 94 47-157 18-111 (394)
189 PF11020 DUF2610: Domain of un 32.5 1.8E+02 0.004 20.6 5.5 29 198-226 47-75 (82)
190 TIGR02814 pfaD_fam PfaD family 32.1 2.1E+02 0.0046 27.4 7.6 66 89-155 35-107 (444)
191 PF02784 Orn_Arg_deC_N: Pyrido 32.1 2.6E+02 0.0056 24.0 7.8 91 50-155 3-93 (251)
192 cd06543 GH18_PF-ChiA-like PF-C 32.0 2.7E+02 0.0058 25.0 8.0 80 15-96 53-136 (294)
193 PRK02399 hypothetical protein; 31.6 1.7E+02 0.0037 27.6 6.7 40 52-101 200-239 (406)
194 smart00642 Aamy Alpha-amylase 31.4 61 0.0013 26.3 3.5 20 138-157 73-92 (166)
195 cd00248 Mth938-like Mth938-lik 31.4 1.4E+02 0.003 22.4 5.2 53 104-157 36-88 (109)
196 cd00338 Ser_Recombinase Serine 31.2 98 0.0021 23.5 4.5 52 53-105 51-102 (137)
197 KOG1549 Cysteine desulfurase N 31.2 3E+02 0.0066 26.2 8.3 101 50-158 116-221 (428)
198 cd03323 D-glucarate_dehydratas 31.1 2.9E+02 0.0063 25.9 8.4 70 87-157 250-321 (395)
199 TIGR00035 asp_race aspartate r 31.1 3.3E+02 0.0072 23.1 8.4 69 48-117 15-95 (229)
200 COG1751 Uncharacterized conser 30.9 2.9E+02 0.0063 22.4 7.3 75 83-157 12-92 (186)
201 cd01301 rDP_like renal dipepti 30.9 4E+02 0.0087 24.0 12.4 167 58-267 120-301 (309)
202 PF01402 RHH_1: Ribbon-helix-h 30.3 1.2E+02 0.0025 17.7 4.1 22 204-225 10-31 (39)
203 PRK12323 DNA polymerase III su 30.1 6.1E+02 0.013 25.9 11.3 66 48-116 105-172 (700)
204 smart00857 Resolvase Resolvase 30.1 1.5E+02 0.0032 22.9 5.5 51 53-104 51-101 (148)
205 PRK15063 isocitrate lyase; Pro 29.8 1.9E+02 0.0041 27.5 6.8 77 51-132 263-350 (428)
206 COG1149 MinD superfamily P-loo 29.8 1.1E+02 0.0024 27.2 5.0 89 60-160 156-251 (284)
207 TIGR03070 couple_hipB transcri 29.7 77 0.0017 19.8 3.2 21 206-226 5-25 (58)
208 cd01320 ADA Adenosine deaminas 29.6 4.1E+02 0.0089 23.7 9.7 109 47-155 66-193 (325)
209 TIGR01286 nifK nitrogenase mol 29.5 3.9E+02 0.0084 26.1 9.2 110 6-121 121-249 (515)
210 PRK14462 ribosomal RNA large s 29.2 4.7E+02 0.01 24.2 10.1 77 83-159 246-338 (356)
211 PRK14453 chloramphenicol/florf 29.1 4.6E+02 0.01 24.1 9.9 93 67-159 204-330 (347)
212 TIGR00542 hxl6Piso_put hexulos 28.9 2E+02 0.0044 25.1 6.7 17 138-154 97-113 (279)
213 PRK11359 cyclic-di-GMP phospho 28.8 3.7E+02 0.0081 27.2 9.4 101 50-154 644-754 (799)
214 PRK01732 rnpA ribonuclease P; 28.7 2.6E+02 0.0056 21.1 6.6 64 30-96 45-111 (114)
215 PF05049 IIGP: Interferon-indu 28.6 2.4E+02 0.0051 26.4 7.1 76 13-92 128-215 (376)
216 cd01977 Nitrogenase_VFe_alpha 28.4 5E+02 0.011 24.3 14.7 103 15-122 72-191 (415)
217 PRK14465 ribosomal RNA large s 28.0 4.8E+02 0.01 24.0 9.6 89 70-159 215-329 (342)
218 PF01053 Cys_Met_Meta_PP: Cys/ 28.0 2.1E+02 0.0046 26.8 6.9 81 83-163 104-186 (386)
219 TIGR02080 O_succ_thio_ly O-suc 28.0 3E+02 0.0064 25.6 7.9 77 84-160 101-178 (382)
220 PRK14041 oxaloacetate decarbox 27.9 2.6E+02 0.0055 27.0 7.5 100 47-153 22-140 (467)
221 PLN03228 methylthioalkylmalate 27.9 4.8E+02 0.01 25.5 9.4 103 46-156 102-230 (503)
222 cd01979 Pchlide_reductase_N Pc 27.7 4.7E+02 0.01 24.3 9.2 103 14-122 71-183 (396)
223 PRK14470 ribosomal RNA large s 27.5 3.9E+02 0.0085 24.5 8.4 77 83-159 230-322 (336)
224 cd01972 Nitrogenase_VnfE_like 27.3 5.3E+02 0.011 24.3 10.6 104 14-123 73-196 (426)
225 PF00356 LacI: Bacterial regul 27.3 98 0.0021 19.4 3.1 42 208-257 2-43 (46)
226 PRK09726 antitoxin HipB; Provi 27.1 1.8E+02 0.0039 20.6 5.0 55 206-260 15-69 (88)
227 COG2875 CobM Precorrin-4 methy 26.9 2.9E+02 0.0062 24.1 6.7 102 47-154 59-165 (254)
228 PRK14477 bifunctional nitrogen 26.8 7.8E+02 0.017 26.0 13.6 102 14-121 96-212 (917)
229 PRK05718 keto-hydroxyglutarate 26.8 2.7E+02 0.0058 23.7 6.8 88 48-153 25-113 (212)
230 COG0673 MviM Predicted dehydro 26.6 2E+02 0.0043 25.7 6.4 67 206-274 41-117 (342)
231 PRK14703 glutaminyl-tRNA synth 26.5 6.7E+02 0.014 26.0 10.4 62 48-117 78-139 (771)
232 PF10171 DUF2366: Uncharacteri 26.5 1.3E+02 0.0028 24.8 4.5 38 68-106 78-117 (173)
233 COG1104 NifS Cysteine sulfinat 26.5 2.7E+02 0.0059 26.1 7.1 79 84-162 102-185 (386)
234 cd07938 DRE_TIM_HMGL 3-hydroxy 26.5 2.5E+02 0.0054 24.8 6.8 99 51-153 20-132 (274)
235 COG2185 Sbm Methylmalonyl-CoA 26.4 2E+02 0.0042 23.0 5.4 56 102-162 20-77 (143)
236 cd03314 MAL Methylaspartate am 26.3 5.3E+02 0.012 24.0 9.8 85 70-156 229-320 (369)
237 PRK10200 putative racemase; Pr 26.3 4.1E+02 0.009 22.7 8.5 67 48-116 15-93 (230)
238 cd06836 PLPDE_III_ODC_DapDC_li 26.1 3.9E+02 0.0084 24.7 8.3 88 48-151 9-96 (379)
239 cd03768 SR_ResInv Serine Recom 26.1 1.5E+02 0.0032 22.2 4.7 49 53-104 42-90 (126)
240 PRK07114 keto-hydroxyglutarate 25.9 2.8E+02 0.0061 23.8 6.7 88 48-153 25-117 (222)
241 PTZ00437 glutaminyl-tRNA synth 25.9 2.7E+02 0.0059 27.6 7.3 61 48-117 98-158 (574)
242 PF13380 CoA_binding_2: CoA bi 25.8 1.7E+02 0.0037 22.0 4.9 54 96-155 53-109 (116)
243 PHA02128 hypothetical protein 25.8 1.8E+02 0.0038 22.0 4.7 72 83-154 59-150 (151)
244 PF00697 PRAI: N-(5'phosphorib 25.7 3.9E+02 0.0084 22.2 8.5 82 59-152 14-96 (197)
245 COG1513 CynS Cyanate lyase [In 25.6 3.3E+02 0.0072 21.4 6.3 51 208-271 24-74 (151)
246 cd08568 GDPD_TmGDE_like Glycer 25.5 3.2E+02 0.0069 23.0 7.1 66 90-155 109-201 (226)
247 PRK08084 DNA replication initi 25.3 1.2E+02 0.0026 26.0 4.4 46 67-112 97-145 (235)
248 PF00762 Ferrochelatase: Ferro 25.1 5.2E+02 0.011 23.4 8.8 92 49-159 206-299 (316)
249 cd07937 DRE_TIM_PC_TC_5S Pyruv 25.1 3E+02 0.0064 24.3 7.0 100 47-153 18-136 (275)
250 PRK06703 flavodoxin; Provision 25.1 3.3E+02 0.0072 21.2 7.7 71 6-78 56-127 (151)
251 COG0626 MetC Cystathionine bet 25.0 3.6E+02 0.0079 25.4 7.8 82 83-164 112-195 (396)
252 PRK00588 rnpA ribonuclease P; 24.8 3E+02 0.0066 20.9 6.1 64 30-96 43-109 (118)
253 PF13407 Peripla_BP_4: Peripla 24.8 4.2E+02 0.009 22.2 8.3 73 49-128 13-89 (257)
254 TIGR01860 VNFD nitrogenase van 24.5 6.3E+02 0.014 24.2 10.5 105 14-123 110-231 (461)
255 PRK09284 thiamine biosynthesis 24.3 4.6E+02 0.0099 25.9 8.3 56 85-154 277-336 (607)
256 PF14502 HTH_41: Helix-turn-he 24.3 87 0.0019 20.0 2.4 29 206-234 7-37 (48)
257 COG2055 Malate/L-lactate dehyd 24.2 5.8E+02 0.013 23.6 9.2 89 46-153 5-113 (349)
258 TIGR01664 DNA-3'-Pase DNA 3'-p 24.1 3.8E+02 0.0083 21.5 8.6 91 32-122 59-158 (166)
259 TIGR01210 conserved hypothetic 24.1 5.3E+02 0.012 23.2 10.4 57 89-157 119-177 (313)
260 PRK01045 ispH 4-hydroxy-3-meth 23.9 5.2E+02 0.011 23.3 8.2 108 97-252 156-275 (298)
261 cd01822 Lysophospholipase_L1_l 23.6 3.6E+02 0.0078 21.1 8.2 19 138-156 91-109 (177)
262 PRK10060 RNase II stability mo 23.6 6.6E+02 0.014 25.2 9.9 115 33-154 492-617 (663)
263 PRK09454 ugpQ cytoplasmic glyc 23.6 4.5E+02 0.0097 22.6 7.8 19 137-155 198-216 (249)
264 KOG1185 Thiamine pyrophosphate 23.6 3.3E+02 0.0072 26.5 7.1 16 138-153 41-56 (571)
265 cd03681 MM_CoA_mutase_MeaA Coe 23.5 1.9E+02 0.0042 27.3 5.6 89 48-150 12-106 (407)
266 PRK10605 N-ethylmaleimide redu 23.4 5.9E+02 0.013 23.5 11.4 80 35-118 227-312 (362)
267 TIGR03838 queuosine_YadB gluta 23.4 4E+02 0.0087 23.6 7.4 92 12-116 16-107 (272)
268 PRK05588 histidinol-phosphatas 23.2 4.9E+02 0.011 22.4 12.4 24 53-77 80-103 (255)
269 cd00814 MetRS_core catalytic c 22.9 1.4E+02 0.003 26.9 4.6 47 49-99 68-114 (319)
270 COG2022 ThiG Uncharacterized e 22.9 5.2E+02 0.011 22.6 11.8 73 45-118 78-150 (262)
271 TIGR00238 KamA family protein. 22.9 5.7E+02 0.012 23.2 8.6 107 14-127 174-289 (331)
272 PRK08861 cystathionine gamma-s 22.8 4.8E+02 0.01 24.3 8.2 79 84-162 103-182 (388)
273 PRK11840 bifunctional sulfur c 22.8 6E+02 0.013 23.3 9.9 74 44-118 144-217 (326)
274 PRK09694 helicase Cas3; Provis 22.6 7.9E+02 0.017 25.9 10.3 138 10-158 311-480 (878)
275 cd05006 SIS_GmhA Phosphoheptos 22.6 1.3E+02 0.0029 24.3 4.0 45 68-116 102-146 (177)
276 COG3033 TnaA Tryptophanase [Am 22.6 2E+02 0.0043 26.9 5.3 48 106-153 168-224 (471)
277 PRK14847 hypothetical protein; 22.5 6E+02 0.013 23.4 8.5 106 46-159 50-181 (333)
278 cd08607 GDPD_GDE5 Glycerophosp 22.4 3.5E+02 0.0076 23.8 7.0 19 138-156 248-266 (290)
279 cd00316 Oxidoreductase_nitroge 22.4 6.1E+02 0.013 23.2 15.8 138 14-158 65-234 (399)
280 COG4626 Phage terminase-like p 22.2 4.4E+02 0.0096 26.0 7.9 74 83-159 412-487 (546)
281 cd01821 Rhamnogalacturan_acety 22.1 4.3E+02 0.0093 21.4 7.7 60 98-157 36-116 (198)
282 PLN02438 inositol-3-phosphate 22.0 4.4E+02 0.0095 25.7 7.7 50 49-98 206-258 (510)
283 PRK09389 (R)-citramalate synth 22.0 6.9E+02 0.015 24.2 9.3 99 46-152 20-131 (488)
284 PRK10551 phage resistance prot 21.9 6.1E+02 0.013 24.7 9.0 115 32-154 348-473 (518)
285 TIGR01290 nifB nitrogenase cof 21.9 7E+02 0.015 23.8 12.7 111 46-160 59-199 (442)
286 PRK09282 pyruvate carboxylase 21.7 3.3E+02 0.0072 27.2 7.2 104 47-153 23-141 (592)
287 PRK01903 rnpA ribonuclease P; 21.7 4E+02 0.0086 20.8 7.0 60 33-95 53-128 (133)
288 PRK10550 tRNA-dihydrouridine s 21.6 6E+02 0.013 22.9 9.5 113 8-128 105-224 (312)
289 TIGR03247 glucar-dehydr glucar 21.6 5.3E+02 0.011 24.6 8.3 69 87-156 268-337 (441)
290 PRK08247 cystathionine gamma-s 21.6 4.3E+02 0.0093 24.2 7.6 63 99-161 116-179 (366)
291 PF01890 CbiG_C: Cobalamin syn 21.5 1.9E+02 0.0042 22.1 4.5 55 102-156 6-66 (121)
292 PRK06361 hypothetical protein; 21.4 4.8E+02 0.01 21.6 10.7 90 58-156 79-169 (212)
293 PF08734 GYD: GYD domain; Int 21.4 3.2E+02 0.007 19.7 6.4 67 50-116 19-90 (91)
294 PF02581 TMP-TENI: Thiamine mo 21.3 4.5E+02 0.0097 21.3 11.1 58 98-155 94-156 (180)
295 TIGR02764 spore_ybaN_pdaB poly 21.2 3.5E+02 0.0076 22.0 6.4 30 69-98 153-182 (191)
296 cd00668 Ile_Leu_Val_MetRS_core 21.1 1.4E+02 0.003 26.8 4.2 49 49-101 81-131 (312)
297 PRK13361 molybdenum cofactor b 21.1 5.9E+02 0.013 22.9 8.3 22 138-159 173-196 (329)
298 PRK07998 gatY putative fructos 21.1 6E+02 0.013 22.7 9.2 24 232-255 199-222 (283)
299 PF03308 ArgK: ArgK protein; 21.0 2.7E+02 0.0058 24.7 5.6 75 10-96 153-231 (266)
300 TIGR00433 bioB biotin syntheta 20.9 5.7E+02 0.012 22.4 11.1 105 48-157 63-180 (296)
301 TIGR01927 menC_gamma/gm+ o-suc 20.9 6.1E+02 0.013 22.7 8.7 60 101-161 210-270 (307)
302 COG2179 Predicted hydrolase of 20.8 4.8E+02 0.01 21.5 7.7 85 58-150 21-109 (175)
303 smart00633 Glyco_10 Glycosyl h 20.7 5.1E+02 0.011 22.4 7.5 72 84-155 136-225 (254)
304 TIGR01284 alt_nitrog_alph nitr 20.7 7.5E+02 0.016 23.6 14.9 104 14-122 108-228 (457)
305 PF07745 Glyco_hydro_53: Glyco 20.6 2.8E+02 0.006 25.5 6.0 63 200-272 213-278 (332)
306 PRK08045 cystathionine gamma-s 20.6 5.4E+02 0.012 23.8 8.1 78 84-161 102-180 (386)
307 KOG0059 Lipid exporter ABCA1 a 20.6 4.7E+02 0.01 27.5 8.4 62 52-117 703-766 (885)
308 PRK14865 rnpA ribonuclease P; 20.6 3.8E+02 0.0083 20.2 7.2 63 31-96 46-110 (116)
309 PF02426 MIase: Muconolactone 20.5 2.5E+02 0.0055 20.5 4.6 50 86-136 27-88 (91)
310 TIGR03128 RuMP_HxlA 3-hexulose 20.5 4.9E+02 0.011 21.4 8.0 87 59-153 17-107 (206)
311 cd03319 L-Ala-DL-Glu_epimerase 20.5 6.1E+02 0.013 22.6 12.6 94 48-153 134-233 (316)
312 PRK00915 2-isopropylmalate syn 20.5 6.8E+02 0.015 24.4 9.0 103 46-157 22-141 (513)
313 TIGR01329 cysta_beta_ly_E cyst 20.4 4.5E+02 0.0097 24.3 7.5 77 85-161 97-174 (378)
314 COG2949 SanA Uncharacterized m 20.4 5.5E+02 0.012 22.0 9.8 97 50-155 76-180 (235)
315 cd05125 Mth938_2P1-like Mth938 20.3 2.9E+02 0.0062 21.0 5.1 53 105-157 38-90 (114)
316 TIGR03282 methan_mark_13 putat 20.2 4.7E+02 0.01 24.2 7.2 79 14-100 59-137 (352)
317 PF12683 DUF3798: Protein of u 20.1 6.3E+02 0.014 22.5 8.1 132 50-218 16-165 (275)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=7.2e-52 Score=373.67 Aligned_cols=253 Identities=23% Similarity=0.393 Sum_probs=216.9
Q ss_pred cccccccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCCCC--------CCCCHHHHHHHHHHHHhhhCCCcccEEEEe
Q 022904 3 CHLVFTYGMGLLKISMASSSIEFVERGHQSSWISLTKWVPPP--------VKMTSSIVRESIDVSRRRMDVPCLDMLQFH 74 (290)
Q Consensus 3 ~~~a~~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~--------~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH 74 (290)
.|||++||.|.||++||+++++. +.|++++|+||++... .+.++++|+++++.||+|||||||||||+|
T Consensus 50 ~DTA~~Yg~g~sE~ilG~~l~~~---~~Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH 126 (316)
T COG0667 50 FDTADVYGDGRSEEILGEALKER---GRRDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLH 126 (316)
T ss_pred EECccccCCCchHHHHHHHHhcc---CCCCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeC
Confidence 58999999999999999755433 3499999999998543 456999999999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeeeeccccccccChhhhHHHHHHHhCCeEEec
Q 022904 75 WWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 154 (290)
Q Consensus 75 ~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 154 (290)
+||...+ .++++.+|.+|+++||||+||+||++.+++.++.+...+++++|.+||++++..+.+++++|+++||++++|
T Consensus 127 ~~d~~~p-~~e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~ 205 (316)
T COG0667 127 RPDPETP-IEETLEALDELVREGKIRYIGVSNYSAEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAY 205 (316)
T ss_pred CCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEe
Confidence 9999888 789999999999999999999999999999999984357999999999999988878999999999999999
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCcc
Q 022904 155 GTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVA 234 (290)
Q Consensus 155 spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~~~al~~~l~~~~v~ 234 (290)
|||++|+|++++... +....... +.++ .....+....+.+.+.++|+++|+|++|+||+|++++|.|+
T Consensus 206 spla~G~Ltgk~~~~--~~~~r~~~--------~~~~--~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~ 273 (316)
T COG0667 206 SPLASGLLTGKYLPG--PEGSRASE--------LPRF--QRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVT 273 (316)
T ss_pred cCccccccCCCcCCC--cchhhccc--------cccc--hhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCc
Confidence 999999999998873 11111000 0000 00011234455688999999999999999999999999999
Q ss_pred eeeecCCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHhc
Q 022904 235 GSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKK 273 (290)
Q Consensus 235 ~~i~g~~~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~ 273 (290)
++|+|++ +++||++|+++++..|++++++.|++....
T Consensus 274 ~~I~Ga~--~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 274 SPIVGAS--KAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred eEeecCC--CHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 9999999 999999999999999999999999988754
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=9.9e-52 Score=366.99 Aligned_cols=265 Identities=22% Similarity=0.337 Sum_probs=229.3
Q ss_pred ccccccccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCCC-----CCCCCHHHHHHHHHHHHhhhCCCcccEEEEecC
Q 022904 2 TCHLVFTYGMGLLKISMASSSIEFVERGHQSSWISLTKWVPP-----PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWW 76 (290)
Q Consensus 2 ~~~~a~~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~-----~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p 76 (290)
+-|||..||.|.||+++|++|++. +++|++++|+||++-. +.+.+...+...++.|+++||++||||||+||+
T Consensus 60 ~fDtAe~Yg~~~~E~llg~~i~~~--~~~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~ 137 (336)
T KOG1575|consen 60 FFDTAEVYGNGQSEELLGEFIKSR--GWRRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRW 137 (336)
T ss_pred EEehhhhcCCcccHHHHHHHHHhc--CCcCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEccc
Confidence 358999999999999999877665 3689999999999743 367789999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeeeeccccccccCh-hhhHHHHHHHhCCeEEec
Q 022904 77 DYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITY 154 (290)
Q Consensus 77 ~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~via~ 154 (290)
|...+ +++++++|.+++++|||||||+|+++.+++.++... .+|+.++|++||++.|.. +++++++|++.||++++|
T Consensus 138 D~~~p-iee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~y 216 (336)
T KOG1575|consen 138 DPMVP-IEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAW 216 (336)
T ss_pred CCCCC-HHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEe
Confidence 99999 899999999999999999999999999999999986 467999999999999995 566999999999999999
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCcc
Q 022904 155 GTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVA 234 (290)
Q Consensus 155 spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~~~al~~~l~~~~v~ 234 (290)
|||++|+|++++... .-.+.++.+... +....++......+.+.+++.++|+++|+|++|+||+|+++++.++
T Consensus 217 sPL~~G~Ltgk~~~~-e~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~ 289 (336)
T KOG1575|consen 217 SPLGRGLLTGKYKLG-EDSRNGDKRFQF------LGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVS 289 (336)
T ss_pred cccccceeccCcccc-cccccccccccc------cccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCE
Confidence 999999999998875 122222222211 1112222222556777899999999999999999999999999999
Q ss_pred eeeecCCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHhcCCCCC
Q 022904 235 GSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGKDLL 278 (290)
Q Consensus 235 ~~i~g~~~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~~~~~~ 278 (290)
++|||++ +++||+||++|+..+||++++.+|+++.++...+.
T Consensus 290 ~pIpG~s--~ve~l~eni~Al~~~Lt~e~~~~l~~~~~~~~~~~ 331 (336)
T KOG1575|consen 290 SPIPGAS--KIEQLKENIGALSVKLTPEEIKELEEIIDKILGFG 331 (336)
T ss_pred EecCCCC--cHHHHHHHHhhhhccCCHHHHHHHHHhhccccCcC
Confidence 9999999 99999999999999999999999999987765543
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.4e-51 Score=359.68 Aligned_cols=221 Identities=21% Similarity=0.299 Sum_probs=197.8
Q ss_pred cccccccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCC-Cc
Q 022904 3 CHLVFTYGMGLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NP 81 (290)
Q Consensus 3 ~~~a~~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~-~~ 81 (290)
.|||..|| +|+.+|++|++ .+.+|+++||+||+++. +..++.+.+++++||++||+||||||+||||.+. ..
T Consensus 45 IDTA~~Yg---nE~~VG~aI~~--s~v~ReelFittKvw~~--~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~ 117 (280)
T COG0656 45 IDTAEIYG---NEEEVGEAIKE--SGVPREELFITTKVWPS--DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYV 117 (280)
T ss_pred EecHhHhc---CHHHHHHHHHh--cCCCHHHeEEEeecCCc--cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCc
Confidence 48999999 99999998887 35699999999999987 4478999999999999999999999999999764 22
Q ss_pred cHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeeeeccccccccChhhhHHHHHHHhCCeEEeccccccc
Q 022904 82 GYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 82 ~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G 160 (290)
.+.++|++|++++++||||+||||||+.++++++++. ++.|+++|++||+..+.. +++++|+++||.+++||||++|
T Consensus 118 ~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g 195 (280)
T COG0656 118 VIEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKG 195 (280)
T ss_pred cHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCcccc
Confidence 1579999999999999999999999999999999998 778999999999988775 4999999999999999999965
Q ss_pred c-ccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCcceeeec
Q 022904 161 L-LSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIG 239 (290)
Q Consensus 161 ~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~~~al~~~l~~~~v~~~i~g 239 (290)
. |.. . +.+.++|++||.|++|++|+|+++++. .+||.
T Consensus 196 ~~l~~--------------------------------------~--~~l~~Ia~k~g~t~AQv~L~W~i~~gv--~~Ipk 233 (280)
T COG0656 196 GKLLD--------------------------------------N--PVLAEIAKKYGKTPAQVALRWHIQRGV--IVIPK 233 (280)
T ss_pred ccccc--------------------------------------C--hHHHHHHHHhCCCHHHHHHHHHHhCCc--EEecC
Confidence 3 221 1 789999999999999999999999993 44888
Q ss_pred CCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHhcCCC
Q 022904 240 VRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGKD 276 (290)
Q Consensus 240 ~~~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~~~~ 276 (290)
++ +++|+++|++++++.||+||++.|+++......
T Consensus 234 s~--~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 234 ST--TPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred CC--CHHHHHHHHhhhcCCCCHHHHHHHHhhccccCc
Confidence 88 999999999999999999999999999876533
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=5.1e-49 Score=356.91 Aligned_cols=256 Identities=18% Similarity=0.245 Sum_probs=208.4
Q ss_pred cccccccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCCC-----CCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCC
Q 022904 3 CHLVFTYGMGLLKISMASSSIEFVERGHQSSWISLTKWVPP-----PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWD 77 (290)
Q Consensus 3 ~~~a~~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~-----~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~ 77 (290)
.|||+.||.|.||+++|++|+.. ..+|++++|+||++.. ..+++++.+++++++||++|||||||+|++|+|+
T Consensus 46 ~DTA~~Yg~g~sE~~lG~~l~~~--~~~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~ 123 (317)
T TIGR01293 46 FDTAEVYAAGKAEVVLGNILKKK--GWRRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPD 123 (317)
T ss_pred EECccccCCCccHHHHHHHHHhc--CCCcccEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCC
Confidence 48999999999999999876532 2269999999998531 1346899999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc----C-CCeeeeeccccccccCh-hhhHHHHHHHhCCeE
Q 022904 78 YSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----G-IPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKL 151 (290)
Q Consensus 78 ~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~----~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v 151 (290)
...+ +++++++|++|+++||||+||+|||+.+++.++... + ++++++|++||++++.. +.+++++|+++||++
T Consensus 124 ~~~~-~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v 202 (317)
T TIGR01293 124 PNTP-MEETVRAMTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGA 202 (317)
T ss_pred CCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeE
Confidence 8777 789999999999999999999999999998876543 2 57889999999999874 668999999999999
Q ss_pred EeccccccccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCc--hhHHHHHHHHHHHHHHcCCChHHHHHHHHHh
Q 022904 152 ITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGW--SQFQVLLQTLKRIASKHGVSIPVVAVRYILD 229 (290)
Q Consensus 152 ia~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~la~~~g~s~~~~al~~~l~ 229 (290)
++|+||++|+|++++... .+. +.+.......++. ..+..+ .......+.+.++|+++|+|++|+||+|+++
T Consensus 203 ~a~spl~~G~Ltg~~~~~---~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~ 275 (317)
T TIGR01293 203 MTWSPLACGLVSGKYDSG---IPP-YSRATLKGYQWLK---DKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLR 275 (317)
T ss_pred EEeccccccccCCCCCCC---CCC-cccccccccchhh---hhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhc
Confidence 999999999999987543 111 1010000000010 000001 1123446789999999999999999999999
Q ss_pred CCCcceeeecCCCCCHhHHHHhHhhhcC--CCCHHHHHHHHHH
Q 022904 230 QPAVAGSMIGVRLGLAEHIQDTNAIFML--SLDEDDVNSIQEV 270 (290)
Q Consensus 230 ~~~v~~~i~g~~~~~~~~l~enl~a~~~--~Lt~e~~~~l~~~ 270 (290)
+|.|+++|+|++ +++||++|+++++. +||+++++.|+++
T Consensus 276 ~~~v~~~i~G~~--~~~ql~en~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 276 NEGVSSVLLGAS--SAEQLMENLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred CCCCeEEEeCCC--CHHHHHHHHHHhhccCCCCHHHHHHHHhh
Confidence 999999999999 99999999999997 9999999999875
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.7e-48 Score=357.28 Aligned_cols=269 Identities=20% Similarity=0.265 Sum_probs=214.7
Q ss_pred cccccccCC--ChhhHHhhhchHHHhhhCCCCcEEEEeccCCC------CCCCCHHHHHHHHHHHHhhhCCCcccEEEEe
Q 022904 3 CHLVFTYGM--GLLKISMASSSIEFVERGHQSSWISLTKWVPP------PVKMTSSIVRESIDVSRRRMDVPCLDMLQFH 74 (290)
Q Consensus 3 ~~~a~~Yg~--G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~------~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH 74 (290)
.|||+.||. |.||+.+|+++++.. ...|+++||+||++.. ..+.+++.+++++++||++||+||||+|++|
T Consensus 60 ~DTA~~YG~~~g~sE~~lG~~l~~~~-~~~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH 138 (346)
T PRK09912 60 FDLANNYGPPPGSAEENFGRLLREDF-AAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSH 138 (346)
T ss_pred EEChhhhCCCCCCcHHHHHHHHHhcc-cCCCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 589999994 999999998765421 1369999999998631 1235799999999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc----CCCeeeeeccccccccChh-hhHHHHHHHhCC
Q 022904 75 WWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGV 149 (290)
Q Consensus 75 ~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~----~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi 149 (290)
+|+...+ .++++++|++|+++||||+||||||++++++++.+. +.+++++|++||++++..+ .+++++|+++||
T Consensus 139 ~~~~~~~-~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI 217 (346)
T PRK09912 139 RVDENTP-MEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGV 217 (346)
T ss_pred CCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCc
Confidence 9988777 799999999999999999999999999998866653 5678999999999998754 469999999999
Q ss_pred eEEeccccccccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcCCChHHHHHHHHHh
Q 022904 150 KLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILD 229 (290)
Q Consensus 150 ~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~~~al~~~l~ 229 (290)
++++|+||++|+|++++... .|. +.+.... ..+++.+...+.. +...+..+.+.++|+++|+|++|+||+|+++
T Consensus 218 ~via~spl~~G~Lt~~~~~~---~~~-~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~ 291 (346)
T PRK09912 218 GCIAFTPLAQGLLTGKYLNG---IPQ-DSRMHRE-GNKVRGLTPKMLT-EANLNSLRLLNEMAQQRGQSMAQMALSWLLK 291 (346)
T ss_pred eEEEehhhcCccccCCCCCC---CCC-Ccccccc-ccchhhhchhhcc-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 99999999999999987543 111 1111000 0000011111111 1123446789999999999999999999999
Q ss_pred CCCcceeeecCCCCCHhHHHHhHhhhc-CCCCHHHHHHHHHHHhcCCCCCCccC
Q 022904 230 QPAVAGSMIGVRLGLAEHIQDTNAIFM-LSLDEDDVNSIQEVTKKGKDLLGVIG 282 (290)
Q Consensus 230 ~~~v~~~i~g~~~~~~~~l~enl~a~~-~~Lt~e~~~~l~~~~~~~~~~~~~~~ 282 (290)
+|.|+++|||++ +++||++|+++++ .+|++++++.|+++.++ ..++-|+.
T Consensus 292 ~~~v~~~i~G~~--~~~ql~en~~a~~~~~L~~e~~~~l~~~~~~-~~~~~~~~ 342 (346)
T PRK09912 292 DERVTSVLIGAS--RAEQLEENVQALNNLTFSTEELAQIDQHIAD-GELNLWQA 342 (346)
T ss_pred CCCCeEEEeCCC--CHHHHHHHHhhhcCCCCCHHHHHHHHHhhCc-cceeEeec
Confidence 999999999999 9999999999984 79999999999999855 55555743
No 6
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=3.1e-48 Score=346.28 Aligned_cols=245 Identities=27% Similarity=0.458 Sum_probs=206.6
Q ss_pred cccccccCCChhhHHhhhchHHHhhhCCCCcEEEEeccC---CCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCC
Q 022904 3 CHLVFTYGMGLLKISMASSSIEFVERGHQSSWISLTKWV---PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS 79 (290)
Q Consensus 3 ~~~a~~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~---~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~ 79 (290)
.|||+.||.|.||+.+|++++. .+.+|++++|+||+. ......+++.+++++++||++||+||||+|+||+|+..
T Consensus 34 ~DtA~~Y~~g~sE~~lg~~l~~--~~~~r~~~~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~ 111 (283)
T PF00248_consen 34 FDTADSYGNGRSERILGRALRK--SRVPRDDIFISTKVYGDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPS 111 (283)
T ss_dssp EEECGGGGGGTHHHHHHHHHHH--TSSTGGGSEEEEEEESSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTT
T ss_pred eccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccchhcccccccccc
Confidence 6899999999999999987765 246899999999992 22346789999999999999999999999999999988
Q ss_pred CccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeeeeccccccccChhhhHHHHHHHhCCeEEeccccc
Q 022904 80 NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVM 158 (290)
Q Consensus 80 ~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~ 158 (290)
.....++|++|++|+++|+||+||||||+++.++.+... .++|+++|++||++++....+++++|+++||++++|+||+
T Consensus 112 ~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~ 191 (283)
T PF00248_consen 112 EDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLA 191 (283)
T ss_dssp SSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTG
T ss_pred ccccchhhhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 775799999999999999999999999999999999554 6789999999999977888899999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCcceeee
Q 022904 159 GGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMI 238 (290)
Q Consensus 159 ~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~~~al~~~l~~~~v~~~i~ 238 (290)
+|+|++++.....+.+..... ......+.+.++++++|+|++|+||+|+++++.+.++|+
T Consensus 192 ~G~l~~~~~~~~~~~~~~~~~--------------------~~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~ 251 (283)
T PF00248_consen 192 GGLLTGKYKSPPPPPSRASLR--------------------DAQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIV 251 (283)
T ss_dssp GGCGGTTTTTTTTSTTTSGSS--------------------THGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEE
T ss_pred cCccccccccCCCcccccccc--------------------hhhhhhhhhhhhhhhcccccchhhhhhhhhccccccccC
Confidence 999998877653222211000 022334789999999999999999999999999999999
Q ss_pred cCCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHH
Q 022904 239 GVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVT 271 (290)
Q Consensus 239 g~~~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~ 271 (290)
|++ +++|+++|+++.+.+||++++++|+++.
T Consensus 252 g~~--~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 252 GAS--SPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp B-S--SHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred CCC--CHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 999 9999999999999999999999999864
No 7
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.9e-47 Score=350.52 Aligned_cols=254 Identities=24% Similarity=0.391 Sum_probs=208.1
Q ss_pred cccccccC-------CChhhHHhhhchHHHhhhCCCCcEEEEeccCCCC----------CCCCHHHHHHHHHHHHhhhCC
Q 022904 3 CHLVFTYG-------MGLLKISMASSSIEFVERGHQSSWISLTKWVPPP----------VKMTSSIVRESIDVSRRRMDV 65 (290)
Q Consensus 3 ~~~a~~Yg-------~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~----------~~~~~~~i~~~~~~SL~~Lg~ 65 (290)
.|||+.|| .|.||..+|++++. .+.|++++|+||++... .+++++.+++++++||++||+
T Consensus 47 ~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~---~~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~ 123 (346)
T PRK10625 47 IDVAEMYPVPPRPETQGLTETYIGNWLAK---RGSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQT 123 (346)
T ss_pred EECccccCCCcCCCCCCchHHHHHHHHhh---cCCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 48999998 49999999976643 24699999999985311 146899999999999999999
Q ss_pred CcccEEEEecCCCC-----------------CccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc----CC-Cee
Q 022904 66 PCLDMLQFHWWDYS-----------------NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GI-PVV 123 (290)
Q Consensus 66 d~iDl~~lH~p~~~-----------------~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~----~~-~~~ 123 (290)
||||||+||||+.. .+ ++++|++|++|+++||||+||+|||+.+.+.++... +. .++
T Consensus 124 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~-~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~ 202 (346)
T PRK10625 124 DYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS-LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIV 202 (346)
T ss_pred CeEeEEEeeccCcccccccccccccccccCCCC-HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcE
Confidence 99999999999652 23 689999999999999999999999999988776542 33 488
Q ss_pred eeeccccccccChhhhHHHHHHHhCCeEEeccccccccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHH
Q 022904 124 SNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQV 203 (290)
Q Consensus 124 ~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
++|++||++++..+.+++++|+++||++++|+||++|+|++++..... | .+.+.+ .+..+ .++.. +...+
T Consensus 203 ~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~G~Ltg~~~~~~~--~-~~~~~~--~~~~~----~~~~~-~~~~~ 272 (346)
T PRK10625 203 TIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAFGTLTGKYLNGAK--P-AGARNT--LFSRF----TRYSG-EQTQK 272 (346)
T ss_pred EecCCCCcccccchhHHHHHHHHcCCeEEEeccccCeeccCCCCCCCC--C-CCcccc--ccccc----ccccc-hhHHH
Confidence 899999999988777899999999999999999999999998754311 1 110000 00001 01111 22344
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhCCCcceeeecCCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHh
Q 022904 204 LLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTK 272 (290)
Q Consensus 204 ~~~~l~~la~~~g~s~~~~al~~~l~~~~v~~~i~g~~~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~ 272 (290)
..+.+.++|+++|+|++|+||+|++++|.|+++|+|++ +++||++|+++++.+|++++++.|+++..
T Consensus 273 ~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~--~~~~l~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 273 AVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGAT--TMEQLKTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCC--CHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 56889999999999999999999999999999999999 99999999999999999999999999875
No 8
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=2.8e-47 Score=345.13 Aligned_cols=242 Identities=17% Similarity=0.254 Sum_probs=202.2
Q ss_pred cccccccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCCC--CCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCC
Q 022904 3 CHLVFTYGMGLLKISMASSSIEFVERGHQSSWISLTKWVPP--PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN 80 (290)
Q Consensus 3 ~~~a~~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~--~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~ 80 (290)
.|||+.||.|.||..+|++++.. ..+|+++||+||+++. ..+++++.+++++++||++||+||||+|+||+|+...
T Consensus 48 ~DTA~~Yg~g~sE~~lG~al~~~--~~~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~ 125 (314)
T PLN02587 48 FDTSPYYGGTLSEKVLGKALKAL--GIPREKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGS 125 (314)
T ss_pred EECcCccCCCchHHHHHHHHHhC--CCCcceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcc
Confidence 58999999999999999866543 2369999999999742 2357899999999999999999999999999997432
Q ss_pred --ccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc----CCCeeeeeccccccccChhhhHHHHHHHhCCeEEec
Q 022904 81 --PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 154 (290)
Q Consensus 81 --~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~----~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 154 (290)
..++++|++|++|+++||||+||+|||+++++..+.+. .+.+..+|+.||+.++.. .+++++|+++||++++|
T Consensus 126 ~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~ 204 (314)
T PLN02587 126 LDQIVNETIPALQKLKESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISA 204 (314)
T ss_pred hhhhHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEe
Confidence 12578999999999999999999999999988877653 234555789999877654 48999999999999999
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCcc
Q 022904 155 GTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVA 234 (290)
Q Consensus 155 spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~~~al~~~l~~~~v~ 234 (290)
+||++|+|+++.... ..+ ..+.+...++.++++|+++|+|++|+||+|++++|.|+
T Consensus 205 spl~~G~L~~~~~~~--~~~----------------------~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~ 260 (314)
T PLN02587 205 SPLAMGLLTENGPPE--WHP----------------------APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDIS 260 (314)
T ss_pred chhhccccCCCCCCC--CCC----------------------CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCe
Confidence 999999998763211 000 01234455678999999999999999999999999999
Q ss_pred eeeecCCCCCHhHHHHhHhhhcC----CCCHHHHHHHHHHHhc
Q 022904 235 GSMIGVRLGLAEHIQDTNAIFML----SLDEDDVNSIQEVTKK 273 (290)
Q Consensus 235 ~~i~g~~~~~~~~l~enl~a~~~----~Lt~e~~~~l~~~~~~ 273 (290)
++|+|++ +++||++|+++.+. +|+++++++|+++...
T Consensus 261 ~~i~G~~--~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~~ 301 (314)
T PLN02587 261 TTLVGMN--SVQQVEENVAAATELETSGIDEELLSEVEAILAP 301 (314)
T ss_pred eEEecCC--CHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhcc
Confidence 9999999 99999999999763 7999999999998853
No 9
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=2e-46 Score=332.13 Aligned_cols=219 Identities=16% Similarity=0.257 Sum_probs=192.0
Q ss_pred cccccccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCC--C
Q 022904 3 CHLVFTYGMGLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS--N 80 (290)
Q Consensus 3 ~~~a~~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~--~ 80 (290)
.|||+.|| +|..+|++++.. ..+|+++||+||+++. +.+++.+++++++||++||+||||+|++|+|++. .
T Consensus 33 ~DTA~~Yg---~E~~lG~al~~~--~~~R~~v~i~TK~~~~--~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~ 105 (267)
T PRK11172 33 IDTAQIYD---NEAAVGQAIAES--GVPRDELFITTKIWID--NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEV 105 (267)
T ss_pred EEccchhC---CHHHHHHHHHHc--CCChhHeEEEEEeCCC--CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCC
Confidence 48999998 699999866532 2269999999998653 4678999999999999999999999999999764 3
Q ss_pred ccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CC-CeeeeeccccccccChhhhHHHHHHHhCCeEEeccccc
Q 022904 81 PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GI-PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVM 158 (290)
Q Consensus 81 ~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~-~~-~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~ 158 (290)
+ ..++|++|++|+++||||+||||||+.+++.++.+. +. +++++|++||++++. .+++++|+++||++++|+||+
T Consensus 106 ~-~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~ 182 (267)
T PRK11172 106 S-VEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLA 182 (267)
T ss_pred C-HHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCC
Confidence 4 689999999999999999999999999999998875 33 689999999998774 589999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCcceeee
Q 022904 159 GGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMI 238 (290)
Q Consensus 159 ~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~~~al~~~l~~~~v~~~i~ 238 (290)
+|.+... +.+.++|+++|+|++|+||+|+++++. ++|+
T Consensus 183 ~G~~~~~----------------------------------------~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~ 220 (267)
T PRK11172 183 YGKVLKD----------------------------------------PVIARIAAKHNATPAQVILAWAMQLGY--SVIP 220 (267)
T ss_pred CCcccCC----------------------------------------HHHHHHHHHhCCCHHHHHHHHHHhCCC--Eeec
Confidence 9865320 568899999999999999999999974 4799
Q ss_pred cCCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHhcCC
Q 022904 239 GVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 275 (290)
Q Consensus 239 g~~~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~~~ 275 (290)
|++ +++|+++|+++++.+||+++++.|+++....+
T Consensus 221 g~~--~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~~ 255 (267)
T PRK11172 221 SST--KRENLASNLLAQDLQLDAEDMAAIAALDRNGR 255 (267)
T ss_pred CCC--CHHHHHHHHhhcCCCcCHHHHHHHhhhccCCc
Confidence 999 99999999999999999999999999875543
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=3.6e-46 Score=333.28 Aligned_cols=235 Identities=29% Similarity=0.502 Sum_probs=207.4
Q ss_pred cccccccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCCCC---CCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCC
Q 022904 3 CHLVFTYGMGLLKISMASSSIEFVERGHQSSWISLTKWVPPP---VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS 79 (290)
Q Consensus 3 ~~~a~~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~---~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~ 79 (290)
.|||+.||.|.||+.+|++++.. +.|++++|+||+++.. .+++++.+++++++||++||+||||+|+||+|+..
T Consensus 46 iDTA~~Yg~g~sE~~lG~al~~~---~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~ 122 (285)
T cd06660 46 IDTADVYGDGESEELLGEALKER---GPREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPD 122 (285)
T ss_pred EECccccCCCCCHHHHHHHHhcc---CCcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCC
Confidence 58999999999999999766543 2599999999998653 23689999999999999999999999999999876
Q ss_pred CccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeeeeccccccccChhhhHHHHHHHhCCeEEeccccc
Q 022904 80 NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVM 158 (290)
Q Consensus 80 ~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~ 158 (290)
.....++|++|++++++|+||+||||||+++.+.+++.. ..+|+++|++||++++....+++++|+++||++++|+||+
T Consensus 123 ~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~ 202 (285)
T cd06660 123 TPDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLA 202 (285)
T ss_pred CCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEecccc
Confidence 654689999999999999999999999999999999885 3789999999999999886689999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCcceeee
Q 022904 159 GGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMI 238 (290)
Q Consensus 159 ~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~~~al~~~l~~~~v~~~i~ 238 (290)
+|.|+++......+. .....+.+..++++++++++|+||+|++++|.++++++
T Consensus 203 ~g~l~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~ 255 (285)
T cd06660 203 GGLLTGKYLPGAPPP---------------------------EGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIP 255 (285)
T ss_pred CceecCCCCCCCCCC---------------------------hhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEe
Confidence 999986644331000 00124789999999999999999999999999999999
Q ss_pred cCCCCCHhHHHHhHhhhcCCCCHHHHHHHHH
Q 022904 239 GVRLGLAEHIQDTNAIFMLSLDEDDVNSIQE 269 (290)
Q Consensus 239 g~~~~~~~~l~enl~a~~~~Lt~e~~~~l~~ 269 (290)
|++ +++||++|+++...+|++++++.|++
T Consensus 256 g~~--~~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 256 GAS--SPERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred CCC--CHHHHHHHHhhccCCCCHHHHHHHhh
Confidence 999 99999999999988999999999875
No 11
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=5.8e-46 Score=324.49 Aligned_cols=225 Identities=18% Similarity=0.339 Sum_probs=197.3
Q ss_pred cccccccCCChhhHHhhhchHHHhhhC--CCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCC-
Q 022904 3 CHLVFTYGMGLLKISMASSSIEFVERG--HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS- 79 (290)
Q Consensus 3 ~~~a~~Yg~G~sE~~lG~~~~~~~~~~--~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~- 79 (290)
-|||..|| +|..+|++|++++..+ +|+++||+||+++.. +.++.++.++++||++||+||+|||++|||-..
T Consensus 45 IDtA~~Y~---NE~evG~aik~~i~~~~v~RediFiTSKlw~~~--~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k 119 (300)
T KOG1577|consen 45 IDTAHVYG---NEKEVGEAIKELLAEGGVKREDIFITSKLWPTD--HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFK 119 (300)
T ss_pred eechhhhC---ChHHHHHHHHHHhhhCCcchhhheeeeccCccc--cChhhHHHHHHHHHHHhChhhhheeeEecccccC
Confidence 48999999 9999999999998655 899999999999863 578999999999999999999999999999553
Q ss_pred --------------CccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeeeeccccccccChhhhHHHHH
Q 022904 80 --------------NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELC 144 (290)
Q Consensus 80 --------------~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~ 144 (290)
..+..++|++||++++.|++|+||||||+..++++++.. .++|.++|+++|| ...+.+++++|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP--~~~Q~~L~~fC 197 (300)
T KOG1577|consen 120 DSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHP--YLQQKKLVEFC 197 (300)
T ss_pred CCCCcccccccccccchHHHHHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccC--CcChHHHHHHH
Confidence 112578999999999999999999999999999999998 7899999999999 44556899999
Q ss_pred HHhCCeEEeccccccccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcCCChHHHHH
Q 022904 145 QLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAV 224 (290)
Q Consensus 145 ~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~~~al 224 (290)
+++||.|.|||||+.+.- + . +++.+ +.+++||++||.|++|++|
T Consensus 198 k~~~I~v~AYSpLg~~~~-~--------------------------------~-~ll~~--~~l~~iA~K~~kt~aQIlL 241 (300)
T KOG1577|consen 198 KSKGIVVTAYSPLGSPGR-G--------------------------------S-DLLED--PVLKEIAKKYNKTPAQILL 241 (300)
T ss_pred hhCCcEEEEecCCCCCCC-c--------------------------------c-ccccC--HHHHHHHHHhCCCHHHHHH
Confidence 999999999999987521 0 0 12333 8999999999999999999
Q ss_pred HHHHhCCCcceeeecCCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHhcC
Q 022904 225 RYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKG 274 (290)
Q Consensus 225 ~~~l~~~~v~~~i~g~~~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~~ 274 (290)
||+++++.+ |||.++ ++++|+||++.+++.||++|++.|+......
T Consensus 242 rw~~q~g~~--vipKS~--~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~ 287 (300)
T KOG1577|consen 242 RWALQRGVS--VIPKSS--NPERIKENFKVFDFELTEEDMKKLDSLNSNE 287 (300)
T ss_pred HHHHhCCcE--EEeccC--CHHHHHHHHhhccccCCHHHHHHHhhccccc
Confidence 999999753 377777 9999999999999999999999999765443
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=3.4e-44 Score=321.42 Aligned_cols=221 Identities=15% Similarity=0.203 Sum_probs=191.0
Q ss_pred cccccccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCCC-------CCCCCHHHHHHHHHHHHhhhCCCcccEEEEec
Q 022904 3 CHLVFTYGMGLLKISMASSSIEFVERGHQSSWISLTKWVPP-------PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHW 75 (290)
Q Consensus 3 ~~~a~~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~-------~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~ 75 (290)
.|||+.||.|.||+.+|++++ +.|+++||+||++.. ..+++++.+++++++||++||+||||+|++|+
T Consensus 57 ~DTA~~Yg~~~sE~~lg~~l~-----~~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~ 131 (290)
T PRK10376 57 IDTSDFYGPHVTNQLIREALH-----PYPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRL 131 (290)
T ss_pred EEChhhcCCCcHHHHHHHHHh-----cCCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEec
Confidence 489999999999999996442 358999999998631 23568999999999999999999999999988
Q ss_pred CCC----CCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeeeeccccccccChhhhHHHHHHHhCCeE
Q 022904 76 WDY----SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKL 151 (290)
Q Consensus 76 p~~----~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v 151 (290)
++. ......++|++|++|+++||||+||||||+++++.++.+ ..+++++|++||++++.. .+++++|+++||++
T Consensus 132 ~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~-~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v 209 (290)
T PRK10376 132 MGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLSNVTPTQVAEARK-IAEIVCVQNHYNLAHRAD-DALIDALARDGIAY 209 (290)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEecCCCHHHHHHHHh-hCCeEEEecccCCCcCCh-HHHHHHHHHcCCEE
Confidence 521 122267999999999999999999999999999999887 457899999999998764 57999999999999
Q ss_pred EeccccccccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcCCChHHHHHHHHHhCC
Q 022904 152 ITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQP 231 (290)
Q Consensus 152 ia~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~~~al~~~l~~~ 231 (290)
++|+||+++. + .. .+.+.++|+++|+|++|+||+|+++++
T Consensus 210 ~a~~pL~g~~------------~--------------------------~~--~~~l~~ia~~~~~t~aq~al~w~l~~~ 249 (290)
T PRK10376 210 VPFFPLGGFT------------P--------------------------LQ--SSTLSDVAASLGATPMQVALAWLLQRS 249 (290)
T ss_pred EEeecCCCCC------------h--------------------------hh--hHHHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 9999997431 0 00 167899999999999999999999987
Q ss_pred CcceeeecCCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHh
Q 022904 232 AVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTK 272 (290)
Q Consensus 232 ~v~~~i~g~~~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~ 272 (290)
.+.++|+|++ +++|+++|+++++++|++++++.|+++..
T Consensus 250 ~~~~~i~G~~--~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 250 PNILLIPGTS--SVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred CCeeEeeCCC--CHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 6678899999 99999999999999999999999999864
No 13
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.4e-44 Score=303.70 Aligned_cols=233 Identities=22% Similarity=0.273 Sum_probs=209.8
Q ss_pred ccccccccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCC----------CCCCCCHHHHHHHHHHHHhhhCCCcccEE
Q 022904 2 TCHLVFTYGMGLLKISMASSSIEFVERGHQSSWISLTKWVP----------PPVKMTSSIVRESIDVSRRRMDVPCLDML 71 (290)
Q Consensus 2 ~~~~a~~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~----------~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~ 71 (290)
|+|-|+.||+|..|+.+|++++ +.++-||++.|+||+|- ..+++|.++|.+|+++||+||+|||+|++
T Consensus 47 t~DhADIYGgy~cE~~fg~aL~--l~p~lRekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~L 124 (298)
T COG4989 47 TFDHADIYGGYQCEALFGEALK--LAPGLREKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLL 124 (298)
T ss_pred cchhhhhcCCccHHHHHHHHHh--cChhhhhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhh
Confidence 6789999999999999998775 24678999999999983 24578999999999999999999999999
Q ss_pred EEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeeeeccccccccCh-hhhHHHHHHHhCC
Q 022904 72 QFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRP-QQKMAELCQLTGV 149 (290)
Q Consensus 72 ~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi 149 (290)
+||+||+-++ -+++.++|..|++.||||++|||||++.+++-+.++ ..+.+.||+++|+++... .++.+++|+++.|
T Consensus 125 LiHRPDpLmd-~eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v 203 (298)
T COG4989 125 LIHRPDPLMD-AEEVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRV 203 (298)
T ss_pred hccCCcccCC-HHHHHHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCC
Confidence 9999999999 699999999999999999999999999999999887 567999999999988765 4579999999999
Q ss_pred eEEeccccccccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcC-CChHHHHHHHHH
Q 022904 150 KLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHG-VSIPVVAVRYIL 228 (290)
Q Consensus 150 ~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g-~s~~~~al~~~l 228 (290)
..++||||++|.++.. .+..+.+.+++..+|+++| .|.++++++|++
T Consensus 204 ~pmaWSpl~gG~~F~g--------------------------------~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWll 251 (298)
T COG4989 204 RPMAWSPLGGGGLFLG--------------------------------DDKFQRLRKVLDRIAEEYGAVSITAVAIAWLL 251 (298)
T ss_pred CcccccccCCCccccC--------------------------------CcchHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 9999999999855421 1124455689999999999 699999999999
Q ss_pred hCCCcceeeecCCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHH
Q 022904 229 DQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVT 271 (290)
Q Consensus 229 ~~~~v~~~i~g~~~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~ 271 (290)
.+|.-..+|+|+. +++++++.++|++..||.+++-+|..+.
T Consensus 252 R~Pa~~~PiiGt~--~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa 292 (298)
T COG4989 252 RHPAKPQPIIGTG--NLERIRAAIKALSLTLTRQQWFEIYTAA 292 (298)
T ss_pred hCcCcccceecCC--CHHHHHHHHHHhhccccHHHHHHHHHHh
Confidence 9999999999999 9999999999999999999999998876
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=6.5e-43 Score=310.72 Aligned_cols=217 Identities=18% Similarity=0.306 Sum_probs=189.1
Q ss_pred cccccccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCcc
Q 022904 3 CHLVFTYGMGLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG 82 (290)
Q Consensus 3 ~~~a~~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~ 82 (290)
.|||+.|| +|+.+|++++.. ...|++++|+||+++. +++.+++++++||++||+||||+|++|+|+...+.
T Consensus 45 ~DTA~~Yg---~E~~lG~al~~~--~~~R~~~~i~tK~~~~----~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~ 115 (275)
T PRK11565 45 IDTAAIYK---NEEGVGKALKEA--SVAREELFITTKLWND----DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDH 115 (275)
T ss_pred EEchhhhC---CHHHHHHHHHHc--CCCHHHEEEEEEecCc----chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCc
Confidence 58999998 699999877532 2368999999998642 57899999999999999999999999999876544
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeeeeccccccccChhhhHHHHHHHhCCeEEecccccccc
Q 022904 83 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 83 ~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
..++|++|++|+++|+||+||||||+++++.++... ++++.++|++||++.+. .+++++|+++||++++|+||++|.
T Consensus 116 ~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~ 193 (275)
T PRK11565 116 YVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGG 193 (275)
T ss_pred HHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCC
Confidence 689999999999999999999999999999998865 56789999999998764 579999999999999999998762
Q ss_pred ccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCcceeeecCC
Q 022904 162 LSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVR 241 (290)
Q Consensus 162 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~~~al~~~l~~~~v~~~i~g~~ 241 (290)
- + .+ . .+.+.++|+++|+|++|+||+|+++++.+ +|+|++
T Consensus 194 ~-~---------~~--------------------------~--~~~l~~ia~~~g~s~aq~aL~w~l~~~~~--~I~g~~ 233 (275)
T PRK11565 194 K-G---------VF--------------------------D--QKVIRDLADKYGKTPAQIVIRWHLDSGLV--VIPKSV 233 (275)
T ss_pred c-c---------cc--------------------------c--CHHHHHHHHHhCCCHHHHHHHHHHcCCCE--eeCCCC
Confidence 0 0 00 0 16789999999999999999999999754 699999
Q ss_pred CCCHhHHHHhHhhhcCCCCHHHHHHHHHHHh
Q 022904 242 LGLAEHIQDTNAIFMLSLDEDDVNSIQEVTK 272 (290)
Q Consensus 242 ~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~ 272 (290)
+++|+++|+++++++|+++++++|+.+..
T Consensus 234 --~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~ 262 (275)
T PRK11565 234 --TPSRIAENFDVFDFRLDKDELGEIAKLDQ 262 (275)
T ss_pred --CHHHHHHHHhccCCCcCHHHHHHHHhhcc
Confidence 99999999999999999999999999874
No 15
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1e-42 Score=311.65 Aligned_cols=228 Identities=16% Similarity=0.116 Sum_probs=187.4
Q ss_pred cccccccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCC-Cc
Q 022904 3 CHLVFTYGMGLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NP 81 (290)
Q Consensus 3 ~~~a~~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~-~~ 81 (290)
.|||+.|| .||..+|++++ +..+++++|+||.. +.+++.+++++++||++||+||||+|++|+|+.. .+
T Consensus 49 ~DTA~~YG--~SE~~lG~al~----~~~~~~~~i~tk~~----~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~ 118 (292)
T PRK14863 49 LDASGLFG--RAETVLGQLIP----RPVPFRVTLSTVRA----DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGP 118 (292)
T ss_pred Eecchhhh--hHHHHHhhhhc----cCCceEeecccccc----cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCc
Confidence 48999995 89999997553 23356799999853 3468999999999999999999999999999763 23
Q ss_pred cHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeeeeccccccccChh-hhHHHHHHHhCCeEEeccccccc
Q 022904 82 GYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 82 ~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~via~spl~~G 160 (290)
...+++++|++|+++||||+||||||+++++..+.. ..+|+++|++||++++..+ .+++++|+++||++++|+||++|
T Consensus 119 ~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~-~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G 197 (292)
T PRK14863 119 HGAALWERLQALKDQGLFAKIGVSAHASDDPVGVAR-RFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNG 197 (292)
T ss_pred chHHHHHHHHHHHHcCCcceEeeeccCHHHHHHHHh-cCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCc
Confidence 225789999999999999999999999999888776 6789999999999998764 46999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCcceeeecC
Q 022904 161 LLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGV 240 (290)
Q Consensus 161 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~~~al~~~l~~~~v~~~i~g~ 240 (290)
+|++.... .+ ..++ + .......+.+++.+++++++|+||+|++++|.|+++|+|+
T Consensus 198 ~L~~~~~~----~~-----------~~~~---------~-~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~ 252 (292)
T PRK14863 198 LLFLPPDR----VP-----------AQLK---------G-ASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGV 252 (292)
T ss_pred cccCCccc----Cc-----------cchh---------h-hhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEec
Confidence 99642110 00 0000 0 1122466777888889999999999999999999999999
Q ss_pred CCCCHhHHHHhHhhhcCCCCHHHHHHHH
Q 022904 241 RLGLAEHIQDTNAIFMLSLDEDDVNSIQ 268 (290)
Q Consensus 241 ~~~~~~~l~enl~a~~~~Lt~e~~~~l~ 268 (290)
+ +++|+++|+++.+.+++++.+++|.
T Consensus 253 ~--~~~ql~~n~~a~~~~~~~~~~~~l~ 278 (292)
T PRK14863 253 N--SAAELSAVVAAASSPPPDLDWDDMA 278 (292)
T ss_pred C--CHHHHHHHHHHHhcCCCccchhhcc
Confidence 9 9999999999999889987776664
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=4.5e-39 Score=284.36 Aligned_cols=230 Identities=18% Similarity=0.247 Sum_probs=197.4
Q ss_pred cccccccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCcc
Q 022904 3 CHLVFTYGMGLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG 82 (290)
Q Consensus 3 ~~~a~~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~ 82 (290)
.|||..|.+|.||..+|+| +..+.|++|.++||+.. +.-.+++++++-++++|++||+||+|+|+||..+.+...
T Consensus 51 idTA~~Yh~g~sE~~lgka----L~~~~Rekv~LaTKlp~-~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~ 125 (391)
T COG1453 51 IDTAWPYHGGESEEFLGKA----LKDGYREKVKLATKLPS-WPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWE 125 (391)
T ss_pred EeecccccCCCchHHHHHH----hhhcccceEEEEeecCC-ccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHH
Confidence 4899999999999999954 45567999999999953 334478999999999999999999999999998663221
Q ss_pred H---HHHHHHHHHHHHcCCccEEEccCCC-HHHHHHHHHcCCCeeeeeccccccccChh--hhHHHHHHHhCCeEEeccc
Q 022904 83 Y---LDALNHLTDLKEEGKIKTVALTNFD-TERLRIILENGIPVVSNQVQHSVVDMRPQ--QKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 83 ~---~~~~~~l~~L~~~G~ir~iGvs~~~-~~~l~~~~~~~~~~~~~q~~~n~~~~~~~--~~~~~~~~~~gi~via~sp 156 (290)
. .++++++++++++|+||++|+|.|+ .+.+.+++. ..+++++|++||.+|.... .+.+++|.++|++|+.++|
T Consensus 126 k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~~~~iv~-a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP 204 (391)
T COG1453 126 KIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVFKEIVD-AYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEP 204 (391)
T ss_pred HHHccChHHHHHHHHhcCcEEEeeecCCCCHHHHHHHHh-cCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEee
Confidence 1 3579999999999999999999995 577888887 6789999999999998764 3899999999999999999
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcC--CChHHHHHHHHHhCCCcc
Q 022904 157 VMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHG--VSIPVVAVRYILDQPAVA 234 (290)
Q Consensus 157 l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g--~s~~~~al~~~l~~~~v~ 234 (290)
+.+|-|..+ .| +++.+++++.+ .||+.+|+||++++|.|.
T Consensus 205 ~~gG~l~~~-------vP-------------------------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~ 246 (391)
T COG1453 205 LDGGGLLYN-------VP-------------------------------EKLEELCRPASPKRSPAEWALRYLLSHPEVT 246 (391)
T ss_pred CCCCCcccC-------CC-------------------------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeE
Confidence 999877532 22 78899999886 489999999999999999
Q ss_pred eeeecCCCCCHhHHHHhHhhhcC--C-CCHHHHHHHHHHHhcCCCCC
Q 022904 235 GSMIGVRLGLAEHIQDTNAIFML--S-LDEDDVNSIQEVTKKGKDLL 278 (290)
Q Consensus 235 ~~i~g~~~~~~~~l~enl~a~~~--~-Lt~e~~~~l~~~~~~~~~~~ 278 (290)
++++|++ +++|++||++.++. | ||+++.+.|+++.+.+....
T Consensus 247 ~vlsGm~--~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~~~~~~ 291 (391)
T COG1453 247 TVLSGMN--TPEQLEENLKIASELEPSLTEEELQILEKVEEIYRESL 291 (391)
T ss_pred EEecCCC--CHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHh
Confidence 9999999 99999999998866 4 99999999888876665543
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=4.8e-38 Score=266.22 Aligned_cols=247 Identities=17% Similarity=0.192 Sum_probs=203.5
Q ss_pred cccccccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCC------CCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecC
Q 022904 3 CHLVFTYGMGLLKISMASSSIEFVERGHQSSWISLTKWVP------PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWW 76 (290)
Q Consensus 3 ~~~a~~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~------~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p 76 (290)
.||+|.||.|+||..+|.+++ .-+|+.++|+||++. ..++++++.+++++++||++|++||+|++++|..
T Consensus 71 iDTsp~Ygqs~se~~lg~al~----~vPR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDv 146 (342)
T KOG1576|consen 71 IDTSPYYGQSRSEEGLGLALK----DVPREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDV 146 (342)
T ss_pred eecCcccCcchhHHHHHHHHh----hCChhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecc
Confidence 589999999999999995444 449999999999984 2368999999999999999999999999999997
Q ss_pred CCC---CccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcC-CCeeee--eccccccccChhhhHHHHHHHhCCe
Q 022904 77 DYS---NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG-IPVVSN--QVQHSVVDMRPQQKMAELCQLTGVK 150 (290)
Q Consensus 77 ~~~---~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~-~~~~~~--q~~~n~~~~~~~~~~~~~~~~~gi~ 150 (290)
+.. ...+.|++.+|++|+++||||+||++.+..+.+.++.+.+ ...+++ ..+|++.+... -..+++.+.+|++
T Consensus 147 efap~ld~vl~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tL-l~~~~~~~sk~vg 225 (342)
T KOG1576|consen 147 EFAPNLDIVLNETLPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTL-LRYLKRLKSKGVG 225 (342)
T ss_pred cccccccHHHHHHHHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHH-HHHHHHHHhcCce
Confidence 654 2225899999999999999999999999999999999872 234444 48888755543 4678889999999
Q ss_pred EEeccccccccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcCCChHHHHHHHHHhC
Q 022904 151 LITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQ 230 (290)
Q Consensus 151 via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~~~al~~~l~~ 230 (290)
|+.-+++..|+|+..-.++++|.+ +.+.....+..++|++.|+..+.+|+.|+++.
T Consensus 226 Vi~AsalsmgLLt~~gp~~wHPaS------------------------~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~ 281 (342)
T KOG1576|consen 226 VINASALSMGLLTNQGPPPWHPAS------------------------DELKEAAKAAAEYCQSRNVELGKLAMYYAMSL 281 (342)
T ss_pred EEehhhHHHHHhhcCCCCCCCCCC------------------------HHHHHHHHHHHHHHHHcCccHHHHHHHHHHcc
Confidence 999999999999987777766665 44556667888999999999999999999999
Q ss_pred CCcceeeecCCCCCHhHHHHhHhhhcCCCCHHH----HHHHHHHHhcCCCCCCcc
Q 022904 231 PAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDD----VNSIQEVTKKGKDLLGVI 281 (290)
Q Consensus 231 ~~v~~~i~g~~~~~~~~l~enl~a~~~~Lt~e~----~~~l~~~~~~~~~~~~~~ 281 (290)
+++.++++|++ +.++++.|+++.-..||..+ ...+++.++. ....+|+
T Consensus 282 ~~~~~~lvGm~--s~~~l~~nLdan~~~ls~~~~Qevl~~~r~~~~~-~kn~~W~ 333 (342)
T KOG1576|consen 282 PGVSTVLVGMS--SRQLLRINLDANFDRLSSKHEQEVLRILREILKE-TKNEEWE 333 (342)
T ss_pred CCcceEEecCc--hHHHHHHHHHhhhccccchhHHHHHHHHHHHhhh-hccCCCC
Confidence 99999999999 99999999998766677633 3334444432 3345583
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.89 E-value=3.5e-05 Score=65.56 Aligned_cols=72 Identities=24% Similarity=0.366 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeeeeccccccccChhhhHHHHHHHhCCeEEecc
Q 022904 83 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 83 ~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 155 (290)
+.+.|..||+++.+|+|..||+|.|+..++++++.. .+.|..+|+...-...-| .++..||..++|.+..++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 358999999999999999999999999999999997 788999999998877776 489999999999999876
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=91.29 E-value=0.72 Score=38.63 Aligned_cols=106 Identities=17% Similarity=0.181 Sum_probs=75.9
Q ss_pred HHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeeeeccccc
Q 022904 53 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSV 131 (290)
Q Consensus 53 ~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~ 131 (290)
...+++.|....-+.+|.+.+..--.. +..--..|+++..-|+---+++.||.-+..+.-+-. |--|..-.++|+.
T Consensus 61 q~Dld~gL~~f~d~sFD~VIlsqtLQ~---~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~W 137 (193)
T PF07021_consen 61 QGDLDEGLADFPDQSFDYVILSQTLQA---VRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEW 137 (193)
T ss_pred ECCHHHhHhhCCCCCccEEehHhHHHh---HhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 344556667777778888877652111 233445577777888877899999988887666553 5457778888887
Q ss_pred cccCh-----hhhHHHHHHHhCCeEEecccccccc
Q 022904 132 VDMRP-----QQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 132 ~~~~~-----~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
.+... -++.-++|++.||.+.-..++.++.
T Consensus 138 YdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 138 YDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred cCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 55543 4678899999999999999997764
No 20
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=85.75 E-value=9 Score=33.69 Aligned_cols=67 Identities=4% Similarity=-0.054 Sum_probs=48.3
Q ss_pred HHHHHHcCCccEEEc--cCCCHHHHHHHHHcCCCeeeeeccccccccChhhhHHHHHHHhCCeEEecccc
Q 022904 90 LTDLKEEGKIKTVAL--TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 90 l~~L~~~G~ir~iGv--s~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 157 (290)
|.+-.++|+. .+|+ ..-++...+.+-..+++|.++=+++.+++...-..++..|+..|+..+.+-|-
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~ 78 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT 78 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 4455556875 4553 23345555555555889999999999988877677899999999999987655
No 21
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=84.01 E-value=39 Score=31.96 Aligned_cols=106 Identities=15% Similarity=0.140 Sum_probs=62.6
Q ss_pred hHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhC-CCcccEEEEecCCCCCccH---HHHHHHH
Q 022904 15 KISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMD-VPCLDMLQFHWWDYSNPGY---LDALNHL 90 (290)
Q Consensus 15 E~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg-~d~iDl~~lH~p~~~~~~~---~~~~~~l 90 (290)
|+.|-++|+++.++.+.+-++|.|=+.+.- -.+++..-+++.-++.. -.-+.++.+|.|....... +.++++|
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~v~~tC~~~l---iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a~~al 142 (428)
T cd01965 66 EDNLIEALKNLLSRYKPDVIGVLTTCLTET---IGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNAVKAI 142 (428)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcchhh---cCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHHHHHH
Confidence 778888898997776666788888776532 23555555555443321 0136788898887664322 3344444
Q ss_pred HH-H------HHcCCccEEEccCC---CHHHHHHHHHc-CCCee
Q 022904 91 TD-L------KEEGKIKTVALTNF---DTERLRIILEN-GIPVV 123 (290)
Q Consensus 91 ~~-L------~~~G~ir~iGvs~~---~~~~l~~~~~~-~~~~~ 123 (290)
-+ + ++.++|--||-++. +.+.+.++++. ++++.
T Consensus 143 ~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~ 186 (428)
T cd01965 143 IEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPI 186 (428)
T ss_pred HHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEE
Confidence 32 2 13456777876654 35677777775 44433
No 22
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=83.94 E-value=44 Score=32.57 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=56.7
Q ss_pred ccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHH
Q 022904 8 TYGMGLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDAL 87 (290)
Q Consensus 8 ~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~ 87 (290)
..+.| +|+.|-++|+++.++.+.+-|+|.|=+.+ +-|-..++...+.++. -++++.++.|..........-
T Consensus 64 dlv~G-~~ekL~~aI~~~~~~~~P~~I~V~sTC~s-------eiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~~~G~~ 134 (519)
T PRK02910 64 DLARG-TAELLKDTLRRADERFQPDLIVVGPSCTA-------ELLQEDLGGLAKHAGL-PIPVLPLELNAYRVKENWAAD 134 (519)
T ss_pred cccCC-hHHHHHHHHHHHHHhcCCCEEEEeCCcHH-------HHhccCHHHHHHHhCC-CCCEEEEecCCcccccchHHH
Confidence 34445 45577777878866655555677776643 4444444444445554 367999999866554322333
Q ss_pred HHHHHHHH---------------cCCccEEEccCC------CHHHHHHHHHc
Q 022904 88 NHLTDLKE---------------EGKIKTVALTNF------DTERLRIILEN 118 (290)
Q Consensus 88 ~~l~~L~~---------------~G~ir~iGvs~~------~~~~l~~~~~~ 118 (290)
.+|+.+++ .++|--||.++. +...+..+++.
T Consensus 135 ~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~ 186 (519)
T PRK02910 135 ETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLAT 186 (519)
T ss_pred HHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHH
Confidence 33333221 245777887642 33455555553
No 23
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=82.45 E-value=34 Score=32.74 Aligned_cols=109 Identities=14% Similarity=0.171 Sum_probs=60.8
Q ss_pred cccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhC-CCcccEEEEecCCCCCcc---
Q 022904 7 FTYGMGLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMD-VPCLDMLQFHWWDYSNPG--- 82 (290)
Q Consensus 7 ~~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg-~d~iDl~~lH~p~~~~~~--- 82 (290)
.+|| .|+-|-++|+++.++.+.+=++|.|=+-+.- -.+++..-+++.-++.. ..-+.++.++.|+.....
T Consensus 72 ~VfG---g~~~L~~aI~~~~~~~~P~~I~V~ttC~~ei---IGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~~~G 145 (455)
T PRK14476 72 TILG---GDENVEEAILNICKKAKPKIIGLCTTGLTET---RGDDVAGALKEIRARHPELADTPIVYVSTPDFKGALEDG 145 (455)
T ss_pred eEeC---CHHHHHHHHHHHHHhhCCCEEEEeCcchHhh---hhccHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHH
Confidence 3566 5678888888887766666677777664422 23444444444433321 113679999998765432
Q ss_pred HHHHHHHHHH-HH--------HcCCccEEEccCC---CHHHHHHHHHc-CCC
Q 022904 83 YLDALNHLTD-LK--------EEGKIKTVALTNF---DTERLRIILEN-GIP 121 (290)
Q Consensus 83 ~~~~~~~l~~-L~--------~~G~ir~iGvs~~---~~~~l~~~~~~-~~~ 121 (290)
.+.++.++.+ +. ++++|--||-+++ +.+.+.++++. ++.
T Consensus 146 ~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~ 197 (455)
T PRK14476 146 WAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLE 197 (455)
T ss_pred HHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCc
Confidence 2334433332 22 2355777875443 44556666553 443
No 24
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=81.98 E-value=15 Score=32.25 Aligned_cols=102 Identities=15% Similarity=0.094 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEE-EecCCCCCcc----HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCC
Q 022904 47 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPG----YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 121 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~Lg~d~iDl~~-lH~p~~~~~~----~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 121 (290)
++.+.+.+.+.+.+ +-|.|.||+=. =.+|...... ++.+...++.+++.-.+- +.+.++.++.++++++.+.+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 46677777776665 66999999853 2334333211 234445567777663443 89999999999999986533
Q ss_pred eeeeeccccccccChhhhHHHHHHHhCCeEEecc
Q 022904 122 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 122 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 155 (290)
+. +..+..... .++++.++++|+.++.+.
T Consensus 99 iI---Ndisg~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 99 II---NDVSGGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred EE---EeCCCCCCC--hHHHHHHHHcCCCEEEEC
Confidence 32 222332222 478999999999999953
No 25
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=81.83 E-value=10 Score=33.01 Aligned_cols=106 Identities=14% Similarity=0.099 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcC-CccEEEccCCCHHHHHHHHHcCCCeee
Q 022904 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 124 (290)
Q Consensus 46 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~ 124 (290)
.++.+...+-++. |..+|+++|.+-..-.+... +.....++.++.+++.+ .++...++.-..+.++.+.+.+ ++.
T Consensus 15 ~~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g--~~~ 90 (265)
T cd03174 15 TFSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG--VDE 90 (265)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC--cCE
Confidence 3455666555554 77899988888776654332 22356778888999988 5777677765577788877654 455
Q ss_pred eeccccccc--------------cChhhhHHHHHHHhCCeEEecc
Q 022904 125 NQVQHSVVD--------------MRPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 125 ~q~~~n~~~--------------~~~~~~~~~~~~~~gi~via~s 155 (290)
+++.+...+ ...-...++.+++.|+.+...-
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 555555431 1112457888999998877643
No 26
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=81.44 E-value=52 Score=31.55 Aligned_cols=106 Identities=9% Similarity=0.035 Sum_probs=60.5
Q ss_pred cccCCChhhHHhhhchHHHhhhCC-CCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCC---C-cccEEEEecCCCCCc
Q 022904 7 FTYGMGLLKISMASSSIEFVERGH-QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDV---P-CLDMLQFHWWDYSNP 81 (290)
Q Consensus 7 ~~Yg~G~sE~~lG~~~~~~~~~~~-R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~---d-~iDl~~lH~p~~~~~ 81 (290)
.+|| .|+-|-++|+++.++.+ .+=++|.|=+.+.--+ |++..-+++.-++++- + .+.++.+|.|+....
T Consensus 66 ~VfG---G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiIG---DDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs 139 (454)
T cd01973 66 AVFG---GAKRVEEGVLVLARRYPDLRVIPIITTCSTEIIG---DDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGS 139 (454)
T ss_pred eEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHhhhc---cCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCC
Confidence 4566 57777788888877664 4557888887653322 4444444443222211 1 478999999887654
Q ss_pred cHHHHHHHHHHHHH--------cCCccEEEccC--CCHHHHHHHHHc
Q 022904 82 GYLDALNHLTDLKE--------EGKIKTVALTN--FDTERLRIILEN 118 (290)
Q Consensus 82 ~~~~~~~~l~~L~~--------~G~ir~iGvs~--~~~~~l~~~~~~ 118 (290)
....-..+++.+.+ +++|--||-.+ .+.+.+.++++.
T Consensus 140 ~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~ 186 (454)
T cd01973 140 MVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSE 186 (454)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHH
Confidence 33333333433332 46677786432 233555666553
No 27
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=80.85 E-value=21 Score=31.60 Aligned_cols=67 Identities=7% Similarity=0.040 Sum_probs=46.8
Q ss_pred HHHHHHcCCccEEEc-cC-CCHHHHHHHHHcCCCeeeeeccccccccChhhhHHHHHHHhCCeEEecccc
Q 022904 90 LTDLKEEGKIKTVAL-TN-FDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 90 l~~L~~~G~ir~iGv-s~-~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 157 (290)
|.+..++|+.- +|. .. -++...+.+-..++++.++=.++.+++...-..++..++..|+..+.+-|-
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~ 77 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVE 77 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCC
Confidence 44445567763 443 33 345555555554888999999999988877667889999999988877653
No 28
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=79.78 E-value=57 Score=30.99 Aligned_cols=110 Identities=10% Similarity=0.131 Sum_probs=62.8
Q ss_pred cccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCC-cccEEEEecCCCCCccH--
Q 022904 7 FTYGMGLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVP-CLDMLQFHWWDYSNPGY-- 83 (290)
Q Consensus 7 ~~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d-~iDl~~lH~p~~~~~~~-- 83 (290)
.+|| .|+-|-++|+++.++.+.+=++|.|-+.+.- -.+++..-+++.-++.... .+.++.++.|.......
T Consensus 65 ~V~G---g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~i---iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~~~G 138 (435)
T cd01974 65 AVFG---GQNNLIDGLKNAYAVYKPDMIAVSTTCMAEV---IGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSHITG 138 (435)
T ss_pred eEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCchHhh---hhccHHHHHHHHHHhccCCCCCeEEEecCCCCccCHHHH
Confidence 3556 4778888888887776667788888776532 2355555555544443211 47899999886654322
Q ss_pred -HHHHHHHH-HHHH-------cCCccEEE-ccCC-C-HHHHHHHHHc-CCCe
Q 022904 84 -LDALNHLT-DLKE-------EGKIKTVA-LTNF-D-TERLRIILEN-GIPV 122 (290)
Q Consensus 84 -~~~~~~l~-~L~~-------~G~ir~iG-vs~~-~-~~~l~~~~~~-~~~~ 122 (290)
+.++++|- .+.. .++|--|| +.+. + .+.+.++++. |+.+
T Consensus 139 ~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~ 190 (435)
T cd01974 139 YDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDY 190 (435)
T ss_pred HHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCE
Confidence 33444443 2222 23455565 2222 2 5677777775 5444
No 29
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=79.54 E-value=37 Score=31.60 Aligned_cols=137 Identities=15% Similarity=0.144 Sum_probs=76.6
Q ss_pred hhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCcc---HHHHHHHH
Q 022904 14 LKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG---YLDALNHL 90 (290)
Q Consensus 14 sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~---~~~~~~~l 90 (290)
.|+-|-+++++..++.+.+-++|.|=+.+.- -.+++..-+++.-++.+. .++.+|.+...... .+.++.+|
T Consensus 58 ~~~kL~~~i~~~~~~~~P~~i~v~~sC~~~i---IGdD~~~v~~~~~~~~~~---~vi~v~~~gf~~~~~~G~~~a~~~l 131 (398)
T PF00148_consen 58 GEEKLREAIKEIAEKYKPKAIFVVTSCVPEI---IGDDIEAVARELQEEYGI---PVIPVHTPGFSGSYSQGYDAALRAL 131 (398)
T ss_dssp SHHHHHHHHHHHHHHHSTSEEEEEE-HHHHH---TTTTHHHHHHHHHHHHSS---EEEEEE--TTSSSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhcCCCcEEEEECCCCHHH---hCCCHHHHHHHhhcccCC---cEEEEECCCccCCccchHHHHHHHH
Confidence 6777888888887776678888888875422 224555555555556654 89999988663332 24555555
Q ss_pred HHHH-H------cCCccEEEccCCCHH---HHHHHHHcCCCeeeeecc----------------ccccccChhhh-HHHH
Q 022904 91 TDLK-E------EGKIKTVALTNFDTE---RLRIILENGIPVVSNQVQ----------------HSVVDMRPQQK-MAEL 143 (290)
Q Consensus 91 ~~L~-~------~G~ir~iGvs~~~~~---~l~~~~~~~~~~~~~q~~----------------~n~~~~~~~~~-~~~~ 143 (290)
-+.. + ++.|--||.++.... .+.++++. ..+.++.+. +|+........ ..++
T Consensus 132 ~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~-~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~~~~a~~ 210 (398)
T PF00148_consen 132 AEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEE-LGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGGPYAAEW 210 (398)
T ss_dssp HHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHH-TTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHHHHHHHH
T ss_pred HhhcccccccCCCCceEEecCcCCCcccHHHHHHHHHH-CCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchhhHHHHH
Confidence 4444 2 256777899977644 44455543 333322222 33322222222 5666
Q ss_pred HHH-hCCeEEe-cccc
Q 022904 144 CQL-TGVKLIT-YGTV 157 (290)
Q Consensus 144 ~~~-~gi~via-~spl 157 (290)
.++ .||+++. -.|+
T Consensus 211 L~e~~giP~~~~~~p~ 226 (398)
T PF00148_consen 211 LEERFGIPYLYFPSPY 226 (398)
T ss_dssp HHHHHT-EEEEEC-SB
T ss_pred HHHHhCCCeeeccccc
Confidence 665 4999998 4444
No 30
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=79.20 E-value=21 Score=31.29 Aligned_cols=65 Identities=5% Similarity=-0.151 Sum_probs=45.6
Q ss_pred HHHHcCCccEEEc--cCCCHHHHHHHHHcCCCeeeeeccccccccChhhhHHHHHHHhCCeEEecccc
Q 022904 92 DLKEEGKIKTVAL--TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 92 ~L~~~G~ir~iGv--s~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 157 (290)
+-.++|+. .+|+ +.-++...+.+-..+++|.++=+++.+++...-..++..++..|+..+.+-|-
T Consensus 5 ~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 5 QDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred HHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 33345664 3443 33345555555555889999999999988876667888889999998887654
No 31
>PLN02540 methylenetetrahydrofolate reductase
Probab=79.04 E-value=64 Score=31.86 Aligned_cols=99 Identities=13% Similarity=0.256 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCC--------ccHHHHHHHHHHHHHc-CCccEEEccCCCH-------
Q 022904 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN--------PGYLDALNHLTDLKEE-GKIKTVALTNFDT------- 109 (290)
Q Consensus 46 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~--------~~~~~~~~~l~~L~~~-G~ir~iGvs~~~~------- 109 (290)
+.+.+.+...+.+. ..+|+. .+|.|-.-.+.. ..+....+-++.+++. |....|||+.+..
T Consensus 69 d~n~~~L~~~L~~a-~~~GIr--NILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~ 145 (565)
T PLN02540 69 NMPVEKIDHALETI-KSNGIQ--NILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIG 145 (565)
T ss_pred CCCHHHHHHHHHHH-HHCCCC--EEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccc
Confidence 44567777777666 788876 566666522111 1133455556666654 5566788874421
Q ss_pred -----------HHHHHHHHc---CCCeeeeeccccccccChhhhHHHHHHHhCCe
Q 022904 110 -----------ERLRIILEN---GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVK 150 (290)
Q Consensus 110 -----------~~l~~~~~~---~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 150 (290)
..+..+.+. |..|.+.|.-|+. ... ...++.|++.||.
T Consensus 146 ~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlfFD~--d~f-~~f~~~~r~~Gi~ 197 (565)
T PLN02540 146 GDGLATPEAYQKDLAYLKEKVDAGADLIITQLFYDT--DIF-LKFVNDCRQIGIT 197 (565)
T ss_pred cccccCCCChHHHHHHHHHHHHcCCCEEeeccccCH--HHH-HHHHHHHHhcCCC
Confidence 245555554 7778889999987 222 3788999999843
No 32
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=77.16 E-value=1.5 Score=40.31 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=42.2
Q ss_pred cCCccEEEccCCCHHHHHHHHHcCCCeeeeeccccccccChhhhHHHHHHHhCCeE
Q 022904 96 EGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKL 151 (290)
Q Consensus 96 ~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v 151 (290)
-|+|||+||--++.+.+.++....-.-++.+.+..++-...+-.+++.+++.||+-
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip~ 318 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIPD 318 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCcH
Confidence 39999999999999999988875223555556666655555667889999988763
No 33
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=75.14 E-value=78 Score=30.16 Aligned_cols=103 Identities=14% Similarity=0.068 Sum_probs=64.6
Q ss_pred hhHHhhhchHHHhhhCCC-CcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCcc----HHHHHH
Q 022904 14 LKISMASSSIEFVERGHQ-SSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG----YLDALN 88 (290)
Q Consensus 14 sE~~lG~~~~~~~~~~~R-~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~----~~~~~~ 88 (290)
.|+-|-++|+++.++.++ +-|+|.|=+.+ ....+++..-+++.-++++ +.++.+|.|...... ...+.+
T Consensus 101 g~~~L~~aI~~~~~~~~p~~~I~V~~tC~~---~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~~~G~~~a~~ 174 (443)
T TIGR01862 101 GEKKLKKLIHEAFTEFPLIKAISVYATCPT---GLIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQSKGHHIANI 174 (443)
T ss_pred cHHHHHHHHHHHHHhCCccceEEEECCChH---HHhccCHHHHHHHHHHhcC---CCEEEEecCCccCCccchHHHHHHH
Confidence 377788888888877776 77888887754 2234666666666555555 689999998765421 233333
Q ss_pred H-HHHHH--------HcCCccEEEccCC--CHHHHHHHHHc-CCCe
Q 022904 89 H-LTDLK--------EEGKIKTVALTNF--DTERLRIILEN-GIPV 122 (290)
Q Consensus 89 ~-l~~L~--------~~G~ir~iGvs~~--~~~~l~~~~~~-~~~~ 122 (290)
+ ++.+. ++++|--||-.++ +.+.+.++++. ++++
T Consensus 175 al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v 220 (443)
T TIGR01862 175 AVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQV 220 (443)
T ss_pred HHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeE
Confidence 3 33454 2467878885554 34566677665 5444
No 34
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=73.46 E-value=43 Score=30.41 Aligned_cols=29 Identities=14% Similarity=0.294 Sum_probs=22.8
Q ss_pred ecCCCCCHhHHHHhHhhhcCC-CCHHHHHHHH
Q 022904 238 IGVRLGLAEHIQDTNAIFMLS-LDEDDVNSIQ 268 (290)
Q Consensus 238 ~g~~~~~~~~l~enl~a~~~~-Lt~e~~~~l~ 268 (290)
.|.. ++..+...++++... +++++++.|-
T Consensus 270 ~gle--d~~~l~~l~~~L~~~G~~e~~i~~i~ 299 (313)
T COG2355 270 DGLE--DVGKLPNLTAALIERGYSEEEIEKIA 299 (313)
T ss_pred hhhc--ChhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4777 888888888887664 9999888763
No 35
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=72.87 E-value=12 Score=31.68 Aligned_cols=100 Identities=10% Similarity=0.087 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhhhCCCcccEEEEe-cCCCCCcc----HHHHHHHHHHHHH--cCCccEEEccCCCHHHHHHHHHcCCCe
Q 022904 50 SIVRESIDVSRRRMDVPCLDMLQFH-WWDYSNPG----YLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPV 122 (290)
Q Consensus 50 ~~i~~~~~~SL~~Lg~d~iDl~~lH-~p~~~~~~----~~~~~~~l~~L~~--~G~ir~iGvs~~~~~~l~~~~~~~~~~ 122 (290)
+...+.+++.+ .-|.|+||+=.-- +|...... ++.+...++.+++ .+. -+.+.++.++.++++++.+.++
T Consensus 19 ~~a~~~a~~~~-~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~g~~~ 95 (210)
T PF00809_consen 19 DEAVKRAREQV-EAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKAGADI 95 (210)
T ss_dssp HHHHHHHHHHH-HTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHHTSSE
T ss_pred HHHHHHHHHHH-HhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHcCcce
Confidence 43444433333 5699999984322 22222211 3455556666664 233 5888899999999999986665
Q ss_pred eeeeccccccccChhhhHHHHHHHhCCeEEecccc
Q 022904 123 VSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 123 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 157 (290)
..+...+.. ..++++.++++|..++.+-.-
T Consensus 96 ind~~~~~~-----~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 96 INDISGFED-----DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp EEETTTTSS-----STTHHHHHHHHTSEEEEESES
T ss_pred EEecccccc-----cchhhhhhhcCCCEEEEEecc
Confidence 544444332 457999999999999987533
No 36
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=72.43 E-value=15 Score=33.03 Aligned_cols=145 Identities=18% Similarity=0.253 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhhhCCCcccEEEEecCCC---CCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHH--HcCCCee
Q 022904 49 SSIVRESIDVSRRRMDVPCLDMLQFHWWDY---SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL--ENGIPVV 123 (290)
Q Consensus 49 ~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~---~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~--~~~~~~~ 123 (290)
.+.+++.|.+-+++.|+|++=++-+-+-.. ..+.....+++|++..+++.-. + + +..+-... +.+.+|.
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~-~--~---aS~~YA~AAl~~g~~fv 204 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE-I--S---ASMLYAYAALEAGVPFV 204 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT-H--H---HHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc-C--C---hHHHHHHHHHHCCCCeE
Confidence 478899999999999988554444433211 0111345788888888876643 2 2 23322222 2244333
Q ss_pred eeeccccccccChhhhHHHHHHHhCCeEEec---cccccccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchh
Q 022904 124 SNQVQHSVVDMRPQQKMAELCQLTGVKLITY---GTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQ 200 (290)
Q Consensus 124 ~~q~~~n~~~~~~~~~~~~~~~~~gi~via~---spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
|-++=+. .....+.+.++++|+.+.+- ++++. ++
T Consensus 205 -N~tP~~~---a~~P~l~ela~~~gvpi~GdD~KT~lAA---------------------------------------pl 241 (295)
T PF07994_consen 205 -NGTPSNI---ADDPALVELAEEKGVPIAGDDGKTPLAA---------------------------------------PL 241 (295)
T ss_dssp -E-SSSTT---TTSHHHHHHHHHHTEEEEESSBS-HHHH---------------------------------------HH
T ss_pred -eccCccc---cCCHHHHHHHHHcCCCeecchHhhhhhh---------------------------------------HH
Confidence 2222222 21247899999999998863 22222 23
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCcceeeecCCCCCHhHH
Q 022904 201 FQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHI 248 (290)
Q Consensus 201 ~~~~~~~l~~la~~~g~s~~~~al~~~l~~~~v~~~i~g~~~~~~~~l 248 (290)
..+ +-.+.++|.+.|..-.+-.++|.+..|.+. .|.. ....+
T Consensus 242 vlD-Lirl~~la~r~g~~Gv~~~ls~ffK~P~~~---~g~~--~~~~l 283 (295)
T PF07994_consen 242 VLD-LIRLAKLALRRGMGGVQEWLSFFFKSPMVP---PGPP--QEHDL 283 (295)
T ss_dssp HHH-HHHHHHHHHHTTS-EEHHHHHHHBSS-T-----TTST--T--HH
T ss_pred HHH-HHHHHHHHHHcCCCChhHHHHHHhcCCCcc---CCCC--CCCcH
Confidence 333 356889999999988999999999999754 4555 44444
No 37
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=72.31 E-value=26 Score=29.80 Aligned_cols=82 Identities=11% Similarity=0.054 Sum_probs=53.2
Q ss_pred HhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCC-ccEEEcc-CCCHHHHHHHHHcCCCeeeeeccccccccChh
Q 022904 60 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALT-NFDTERLRIILENGIPVVSNQVQHSVVDMRPQ 137 (290)
Q Consensus 60 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~-ir~iGvs-~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~ 137 (290)
...+|.||+=+++.-....... . +... ++.+.-. ++.+||. |.+.+.+.++++ ..+++++|++-.. +
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs-~-~~a~---~i~~~v~~~~~VgVf~n~~~~~i~~i~~-~~~ld~VQlHG~e-----~ 86 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVS-P-EQAR---EIASAVPKVKVVGVFVNESIEEILEIAE-ELGLDAVQLHGDE-----D 86 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCC-H-HHHH---HHHHhCCCCCEEEEECCCCHHHHHHHHH-hcCCCEEEECCCC-----C
Confidence 3478999888777663222222 2 3333 3333333 8899988 568888888888 6789999988763 3
Q ss_pred hhHHHHHHHhC-CeEE
Q 022904 138 QKMAELCQLTG-VKLI 152 (290)
Q Consensus 138 ~~~~~~~~~~g-i~vi 152 (290)
.+.++..++.. +.++
T Consensus 87 ~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 87 PEYIDQLKEELGVPVI 102 (208)
T ss_pred HHHHHHHHhhcCCceE
Confidence 45667777654 6665
No 38
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=71.70 E-value=20 Score=33.69 Aligned_cols=120 Identities=13% Similarity=0.183 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc----CCCeeeeeccccccccChhhhHHHHHHHhC--CeEEecccc
Q 022904 84 LDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GIPVVSNQVQHSVVDMRPQQKMAELCQLTG--VKLITYGTV 157 (290)
Q Consensus 84 ~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~----~~~~~~~q~~~n~~~~~~~~~~~~~~~~~g--i~via~spl 157 (290)
-.+++++.+..++++ ++...+++.+-..++. |++|..+....| ++.++.+++.+ +++++++
T Consensus 121 VPiYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi~-------~~~~~~~~~~~R~~giVSRG-- 187 (431)
T PRK13352 121 VPIYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTIHCGVT-------RETLERLKKSGRIMGIVSRG-- 187 (431)
T ss_pred hhHHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEEccchh-------HHHHHHHHhcCCccCeecCC--
Confidence 367888888866554 6778888888777776 666776666555 36777777644 6666542
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCcceee
Q 022904 158 MGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSM 237 (290)
Q Consensus 158 ~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~~~al~~~l~~~~v~~~i 237 (290)
|.++.+ |.. .-..++.+-.-++.+.+++++|+++++ +..+.-+.++
T Consensus 188 -Gs~~~~--------------------WM~------~n~~ENPlye~fD~lLeI~~~yDVtlS-------LGDglRPG~i 233 (431)
T PRK13352 188 -GSFLAA--------------------WML------HNNKENPLYEHFDYLLEILKEYDVTLS-------LGDGLRPGCI 233 (431)
T ss_pred -HHHHHH--------------------HHH------HcCCcCchHHHHHHHHHHHHHhCeeee-------ccCCcCCCcc
Confidence 222211 000 111222233347899999999987642 2333333334
Q ss_pred ecCCCCCHhHHHHhH
Q 022904 238 IGVRLGLAEHIQDTN 252 (290)
Q Consensus 238 ~g~~~~~~~~l~enl 252 (290)
.-++ ...|+.|.+
T Consensus 234 ~Da~--D~aQi~El~ 246 (431)
T PRK13352 234 ADAT--DRAQIQELI 246 (431)
T ss_pred ccCC--cHHHHHHHH
Confidence 4444 666666554
No 39
>PRK13796 GTPase YqeH; Provisional
Probab=71.58 E-value=31 Score=31.98 Aligned_cols=86 Identities=12% Similarity=0.109 Sum_probs=61.5
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCH
Q 022904 30 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT 109 (290)
Q Consensus 30 ~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~ 109 (290)
.+.-++|.+|..-.+.....+.+.+-+....+.+|....|++++-.-. ... +.++++.+.++.+.+.+-.+|.+|.+.
T Consensus 96 ~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~-g~g-I~eL~~~I~~~~~~~~v~vvG~~NvGK 173 (365)
T PRK13796 96 NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQK-GHG-IDELLEAIEKYREGRDVYVVGVTNVGK 173 (365)
T ss_pred CCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCC-CCC-HHHHHHHHHHhcCCCeEEEEcCCCCcH
Confidence 456788999987543333456676666666777776555777776533 233 678888888887778888999999998
Q ss_pred HHHHHHHH
Q 022904 110 ERLRIILE 117 (290)
Q Consensus 110 ~~l~~~~~ 117 (290)
+.+...+-
T Consensus 174 STLiN~L~ 181 (365)
T PRK13796 174 STLINRII 181 (365)
T ss_pred HHHHHHHH
Confidence 87766553
No 40
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=71.48 E-value=60 Score=31.27 Aligned_cols=103 Identities=12% Similarity=0.083 Sum_probs=62.4
Q ss_pred hhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCcc---HHHHHHHH
Q 022904 14 LKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG---YLDALNHL 90 (290)
Q Consensus 14 sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~---~~~~~~~l 90 (290)
.|+-|-++|.++.++.+.+-|+|.|=+.+.- -.+++..-+++.-++++ +.++.++.+...... ...++++|
T Consensus 103 g~~kL~~~I~ei~~~~~P~~I~V~tTC~~~l---IGdDi~~v~~~~~~~~~---~pvi~v~t~Gf~g~~~~G~~~a~~al 176 (475)
T PRK14478 103 GEKKLFKAIDEIIEKYAPPAVFVYQTCVVAL---IGDDIDAVCKRAAEKFG---IPVIPVNSPGFVGNKNLGNKLAGEAL 176 (475)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCChHHH---hccCHHHHHHHHHHhhC---CCEEEEECCCcccchhhhHHHHHHHH
Confidence 6778888888887766666777887775422 23555555555444554 688899987654421 33444444
Q ss_pred HH-HH--------HcCCccEEEccCC--CHHHHHHHHHc-CCCe
Q 022904 91 TD-LK--------EEGKIKTVALTNF--DTERLRIILEN-GIPV 122 (290)
Q Consensus 91 ~~-L~--------~~G~ir~iGvs~~--~~~~l~~~~~~-~~~~ 122 (290)
-+ +. +.+.|--||-.++ +.+.+..+++. ++.+
T Consensus 177 ~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~elk~lL~~~Gl~v 220 (475)
T PRK14478 177 LDHVIGTVEPEDTTPYDINILGEYNLAGELWQVKPLLDRLGIRV 220 (475)
T ss_pred HHHHhccCCccCCCCCeEEEEeCCCCCCCHHHHHHHHHHcCCeE
Confidence 33 43 1356777886654 34567777775 4443
No 41
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=71.46 E-value=36 Score=30.48 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeeee
Q 022904 47 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQ 126 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q 126 (290)
++.+.. ..+-+.|.++|+++|.+-.+++|..-.. +.+.++.+..+.+...++..++. .....++.+.+.+.+...+-
T Consensus 23 ~s~e~k-~~ia~~L~~~Gv~~IEvgsf~~p~~~p~-~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~~~v~i~ 99 (287)
T PRK05692 23 IPTADK-IALIDRLSAAGLSYIEVASFVSPKWVPQ-MADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGADEVAVF 99 (287)
T ss_pred cCHHHH-HHHHHHHHHcCCCEEEeCCCcCcccccc-cccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCCCEEEEE
Confidence 444544 4556669999999999975555532222 22345556666554446665554 47888888888654433333
Q ss_pred ccccccc------cCh------hhhHHHHHHHhCCeEEecc
Q 022904 127 VQHSVVD------MRP------QQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 127 ~~~n~~~------~~~------~~~~~~~~~~~gi~via~s 155 (290)
+..|..+ +.. -...+++++++|+.+.++-
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i 140 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYV 140 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 3333211 111 2468999999999886533
No 42
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=70.32 E-value=52 Score=30.64 Aligned_cols=88 Identities=16% Similarity=0.108 Sum_probs=61.8
Q ss_pred EEEEecCCC-----------CCccHHHHHHHHHHHHHcCCccEEEc-------cCCCHHHHHHHHHc--CC------Cee
Q 022904 70 MLQFHWWDY-----------SNPGYLDALNHLTDLKEEGKIKTVAL-------TNFDTERLRIILEN--GI------PVV 123 (290)
Q Consensus 70 l~~lH~p~~-----------~~~~~~~~~~~l~~L~~~G~ir~iGv-------s~~~~~~l~~~~~~--~~------~~~ 123 (290)
.+-||.|+. ..+ ++++++++.+..++.. |.|-+ -|-++++..++.+. +. +.-
T Consensus 231 AiSLHA~~~e~R~~lmPin~~yp-l~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~ 308 (371)
T PRK14461 231 AISLHAPDDALRSELMPVNRRYP-IADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVH 308 (371)
T ss_pred EEEeCCCCHHHHHHhcCcccCCC-HHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceE
Confidence 367999842 233 6899999998875433 22222 26678888877776 66 679
Q ss_pred eeeccccccccCh--------hhhHHHHHHHhCCeEEecccccc
Q 022904 124 SNQVQHSVVDMRP--------QQKMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 124 ~~q~~~n~~~~~~--------~~~~~~~~~~~gi~via~spl~~ 159 (290)
++-++||+..... -....+.++++||.+..+...+.
T Consensus 309 VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 309 VNLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred EEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 9999999965421 23577788899999999877754
No 43
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=69.49 E-value=30 Score=29.38 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=51.4
Q ss_pred HhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEcc-CCCHHHHHHHHHcCCCeeeeeccccccccChhh
Q 022904 60 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHSVVDMRPQQ 138 (290)
Q Consensus 60 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~ 138 (290)
...+|+|++=+.+......... .+....+.... .+.+..+||. +-+++.+.++++ ...++++|++-+. ..
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~--~~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~-~~~~d~vQLHg~e-----~~ 89 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVS--PEQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVE-TVPLDLLQLHGDE-----TP 89 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCC--HHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHH-hcCCCEEEECCCC-----CH
Confidence 3468999998874333222222 34444443332 3568899988 568888888887 6779999997643 12
Q ss_pred hHHHHHHH-hCCeEE
Q 022904 139 KMAELCQL-TGVKLI 152 (290)
Q Consensus 139 ~~~~~~~~-~gi~vi 152 (290)
..++..++ .++.++
T Consensus 90 ~~~~~l~~~~~~~ii 104 (210)
T PRK01222 90 EFCRQLKRRYGLPVI 104 (210)
T ss_pred HHHHHHHhhcCCcEE
Confidence 34455554 355554
No 44
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=68.98 E-value=51 Score=32.07 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=57.9
Q ss_pred hhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHH
Q 022904 14 LKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDL 93 (290)
Q Consensus 14 sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L 93 (290)
+++.|-++|+++.++.+.+-++|+|=+.+ +-|-..++...+.++.+.++++.++.|..........-.+|+.+
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC~s-------elIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~l 141 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSCTS-------SLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQL 141 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCChH-------HHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHH
Confidence 46777888888876665565666666633 44444444445555544689999999876554222333333333
Q ss_pred H--------------HcCCccEEEccCC------CHHHHHHHHHc
Q 022904 94 K--------------EEGKIKTVALTNF------DTERLRIILEN 118 (290)
Q Consensus 94 ~--------------~~G~ir~iGvs~~------~~~~l~~~~~~ 118 (290)
+ +.+.|--||.++. +.+.+..+++.
T Consensus 142 v~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~ 186 (511)
T TIGR01278 142 VRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKT 186 (511)
T ss_pred HHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 2 2355777898763 33555555553
No 45
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=68.84 E-value=43 Score=30.94 Aligned_cols=86 Identities=14% Similarity=0.139 Sum_probs=59.9
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCH
Q 022904 30 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT 109 (290)
Q Consensus 30 ~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~ 109 (290)
...-++|.+|+.-.+.....+.+.+-+.+-++.+|....|++++-. ..... ++++++.+.++++.+.|-.+|.+|.+.
T Consensus 90 ~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSA-k~g~g-v~eL~~~l~~~~~~~~v~~vG~~nvGK 167 (360)
T TIGR03597 90 GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSA-KKGNG-IDELLDKIKKARNKKDVYVVGVTNVGK 167 (360)
T ss_pred CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecC-CCCCC-HHHHHHHHHHHhCCCeEEEECCCCCCH
Confidence 4566889999975433445667777676677777765446665543 33344 688888888887767888899999988
Q ss_pred HHHHHHHH
Q 022904 110 ERLRIILE 117 (290)
Q Consensus 110 ~~l~~~~~ 117 (290)
+.+-..+-
T Consensus 168 StliN~l~ 175 (360)
T TIGR03597 168 SSLINKLL 175 (360)
T ss_pred HHHHHHHH
Confidence 77655553
No 46
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=68.56 E-value=57 Score=30.12 Aligned_cols=101 Identities=11% Similarity=0.061 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhhCCCcccEEEEecCCC--CCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeeeec
Q 022904 50 SIVRESIDVSRRRMDVPCLDMLQFHWWDY--SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQV 127 (290)
Q Consensus 50 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~--~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~ 127 (290)
..-+..+-+.|.++|+++|++=..-+|.. ...+..+++..+ ++...+++.+++ .....++.+++.+.+...+-+
T Consensus 67 ~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i---~~~~~~~~~~l~-~n~~die~A~~~g~~~v~i~~ 142 (347)
T PLN02746 67 TSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAV---RNLEGARFPVLT-PNLKGFEAAIAAGAKEVAVFA 142 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHH---HhccCCceeEEc-CCHHHHHHHHHcCcCEEEEEE
Confidence 34455666779999999999875555532 222234445554 333335555664 588999999987544332222
Q ss_pred cccccc------cCh------hhhHHHHHHHhCCeEEec
Q 022904 128 QHSVVD------MRP------QQKMAELCQLTGVKLITY 154 (290)
Q Consensus 128 ~~n~~~------~~~------~~~~~~~~~~~gi~via~ 154 (290)
.-|..+ ... -.+++++++++|+.+.++
T Consensus 143 s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 143 SASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 222211 111 236889999999988643
No 47
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=68.33 E-value=1.4e+02 Score=31.42 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=63.5
Q ss_pred cccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhh-CCCcccEEEEecCCCCCccHH-
Q 022904 7 FTYGMGLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRM-DVPCLDMLQFHWWDYSNPGYL- 84 (290)
Q Consensus 7 ~~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~L-g~d~iDl~~lH~p~~~~~~~~- 84 (290)
.+|| .|+-|-++|++...+.+.+-++|.|-+.+.- -.|++..-+++.-++. ...-+.++.++.|+.......
T Consensus 551 ~VfG---G~~~L~~~I~~~~~~~~p~~I~V~tTc~~ei---IGDDi~~vi~~~~~~~~~~~~~pvi~v~tpgF~Gs~~~G 624 (917)
T PRK14477 551 AIFG---GWENLKQGILRVIEKFKPKVIGVMTTGLTET---MGDDVRSAIVQFREEHPELDDVPVVWASTPDYCGSLQEG 624 (917)
T ss_pred eEEC---cHHHHHHHHHHHHHhcCCCEEEEECCchHhh---hhcCHHHHHHHHHhhccccCCCeEEEeeCCCCccCHHHH
Confidence 3566 5777788888887666667788888876532 2345555554443331 112468999999987654333
Q ss_pred --HHHHHHH-HHH-----HcCCccEEEccCCCH---HHHHHHHHc-CCCe
Q 022904 85 --DALNHLT-DLK-----EEGKIKTVALTNFDT---ERLRIILEN-GIPV 122 (290)
Q Consensus 85 --~~~~~l~-~L~-----~~G~ir~iGvs~~~~---~~l~~~~~~-~~~~ 122 (290)
.++++|- .+. ..++|--||-++..+ +.+.++++. ++.+
T Consensus 625 ~~~a~~aiv~~~~~~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl~v 674 (917)
T PRK14477 625 YAAAVEAIVATLPEPGERIPGQVNILPGAHLTPADVEEIKEIVEAFGLDP 674 (917)
T ss_pred HHHHHHHHHHHhccccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCCce
Confidence 3333332 232 246788887665444 445555543 4443
No 48
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=68.12 E-value=1.1e+02 Score=28.96 Aligned_cols=106 Identities=15% Similarity=0.085 Sum_probs=59.8
Q ss_pred hhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHH---HHHHH
Q 022904 14 LKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLD---ALNHL 90 (290)
Q Consensus 14 sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~---~~~~l 90 (290)
.|+-|-++|+++.++.+.+=++|.|-+.+. .-.+++..-+++.-++.....+.++.++.|......... ++++|
T Consensus 68 g~~kL~~aI~~~~~~~~P~~I~V~ttc~~~---iiGdDi~~v~~~~~~~~~~~~~~vi~v~t~gF~g~~~~G~~~a~~al 144 (429)
T cd03466 68 GEKNLKKGLKNVIEQYNPEVIGIATTCLSE---TIGEDVPRIIREFREEVDDSEPKIIPASTPGYGGTHVEGYDTAVRSI 144 (429)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEeCCchHH---HhhcCHHHHHHHHhhcccCCCCcEEEEECCCCcccHHHHHHHHHHHH
Confidence 477888888888776666667777776542 223555555555444311124678999998766442233 33333
Q ss_pred HH-HHH----cCCccEEEccC--CCHHHHHHHHHc-CCCe
Q 022904 91 TD-LKE----EGKIKTVALTN--FDTERLRIILEN-GIPV 122 (290)
Q Consensus 91 ~~-L~~----~G~ir~iGvs~--~~~~~l~~~~~~-~~~~ 122 (290)
-+ +.. .++|--||-.+ .+.+.+.++++. ++.+
T Consensus 145 ~~~~~~~~~~~~~VNlig~~~~~~D~~ei~~lL~~~Gl~~ 184 (429)
T cd03466 145 VKNIAVDPDKIEKINVIAGMMSPADIREIKEILREFGIEY 184 (429)
T ss_pred HHHhccCCCCCCcEEEECCCCChhHHHHHHHHHHHcCCCe
Confidence 22 222 45677777433 234556666664 5444
No 49
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=68.02 E-value=73 Score=26.82 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=33.5
Q ss_pred CCChHHHHHHHHHhCCCcceeeecCCCCCHhHHHHhHhhh
Q 022904 216 GVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 255 (290)
Q Consensus 216 g~s~~~~al~~~l~~~~v~~~i~g~~~~~~~~l~enl~a~ 255 (290)
.-|-.++||+|+.+++.-..++.|+..+..+|.-.|+..+
T Consensus 71 D~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 71 DTTDLELALKYALERGADEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4567789999999987767778999988999999999765
No 50
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=67.95 E-value=74 Score=27.77 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=43.9
Q ss_pred HHHHHHcCCccEEE--ccCCCHHHHHHHHHcCCCeeeeeccccccccChhhhHHHHHHHhCCeEEeccc
Q 022904 90 LTDLKEEGKIKTVA--LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 90 l~~L~~~G~ir~iG--vs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 156 (290)
|.+..++|+. .+| ++.-++..++.+...++++.++=+++++++...-..++..++..|+.++.+-|
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 3344456775 344 33445666666666588888899999997655444577777777888777654
No 51
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=67.62 E-value=14 Score=28.94 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.0
Q ss_pred cChhhhHHHHHHHhCCeEEeccccc
Q 022904 134 MRPQQKMAELCQLTGVKLITYGTVM 158 (290)
Q Consensus 134 ~~~~~~~~~~~~~~gi~via~spl~ 158 (290)
+..-.++++.|++.||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4445789999999999999987775
No 52
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=66.89 E-value=90 Score=27.45 Aligned_cols=99 Identities=10% Similarity=0.206 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEEecC-CCC-------CccHHHHHHHHHHHHHc-CCccEEEccCCC--------
Q 022904 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWW-DYS-------NPGYLDALNHLTDLKEE-GKIKTVALTNFD-------- 108 (290)
Q Consensus 46 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p-~~~-------~~~~~~~~~~l~~L~~~-G~ir~iGvs~~~-------- 108 (290)
+.+...++..+... ..+|++ +++.|-.- ... ........+.++.+++. |....+|+..+.
T Consensus 69 ~~n~~~l~~~L~~~-~~~Gi~--~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~ 145 (274)
T cd00537 69 DRNRIELQSILLGA-HALGIR--NILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPS 145 (274)
T ss_pred CCCHHHHHHHHHHH-HHCCCC--eEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCC
Confidence 44566777766666 566865 67777432 111 11133555555555553 244568876442
Q ss_pred -HHHHHHHHHc---CCCeeeeeccccccccChhhhHHHHHHHhCCe
Q 022904 109 -TERLRIILEN---GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVK 150 (290)
Q Consensus 109 -~~~l~~~~~~---~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 150 (290)
...+..+.+. |..+.+.|.-|++ ... ..+++.|++.||.
T Consensus 146 ~~~~~~~L~~Ki~aGA~f~iTQ~~fd~--~~~-~~~~~~~~~~gi~ 188 (274)
T cd00537 146 LEEDIKRLKRKVDAGADFIITQLFFDN--DAF-LRFVDRCRAAGIT 188 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEeecccccH--HHH-HHHHHHHHHcCCC
Confidence 2344555444 6778999999987 332 4788999999853
No 53
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=66.58 E-value=1.3e+02 Score=29.31 Aligned_cols=105 Identities=12% Similarity=0.065 Sum_probs=65.9
Q ss_pred hhHHhhhchHHHhhhCC-CCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccH----HHHHH
Q 022904 14 LKISMASSSIEFVERGH-QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGY----LDALN 88 (290)
Q Consensus 14 sE~~lG~~~~~~~~~~~-R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~----~~~~~ 88 (290)
.|+-|-++|++..+..+ .+-++|.|=+.+ ..-.|+|..-+++.-++.. -+.++.+|.|....... ..+..
T Consensus 111 Ge~kL~~~I~ea~~~~~~p~~I~V~tTC~t---~lIGDDi~av~k~~~~~~~--~~pVi~v~tpGF~G~~~~gg~~~a~~ 185 (513)
T TIGR01861 111 AEKLLKQNIIEAFKAFPHIKRMTIYQTCAT---ALIGDDIAAIAKEVMEEMP--DVDIFVCNSPGFAGPSQSGGHHKINI 185 (513)
T ss_pred cHHHHHHHHHHHHHhCCCCCeEEEEccCch---hhccCCHHHHHHHHHHhcC--CCcEEEEeCCCccCccccchHHHHHH
Confidence 57777777778877763 667899988865 2344677777766665541 26899999997665322 22232
Q ss_pred H-HHHHHH--------cCCccEEEccCC--CHHHHHHHHHc-CCCee
Q 022904 89 H-LTDLKE--------EGKIKTVALTNF--DTERLRIILEN-GIPVV 123 (290)
Q Consensus 89 ~-l~~L~~--------~G~ir~iGvs~~--~~~~l~~~~~~-~~~~~ 123 (290)
+ ++.+.. .+.|--||-.|+ +.+.+..+++. ++.+.
T Consensus 186 ali~~~v~~~~~~~~~~~~VNliG~~n~~gD~~eik~lLe~~Gl~v~ 232 (513)
T TIGR01861 186 AWINQKVGTVEPEIKGKHVINYVGEYNIQGDQEVMVDYFQRMGIQVL 232 (513)
T ss_pred HHHHHhhcccCcccCCCCeEEEeCCCCCccCHHHHHHHHHHCCCeEE
Confidence 2 334432 256777885554 55777777775 55443
No 54
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=66.38 E-value=69 Score=28.03 Aligned_cols=103 Identities=14% Similarity=0.096 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEE-EecCCCC----CccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCC
Q 022904 47 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYS----NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 121 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~Lg~d~iDl~~-lH~p~~~----~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 121 (290)
.+.+.+.+..++.+ .-|.|.||+=. --+|... ....+.+...++.+++.-.+ -|.+.++.++.++++++.+.+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 36677777777766 67999999863 3334321 11134566777777766333 389999999999999986533
Q ss_pred eeeeeccccccccChhhhHHHHHHHhCCeEEeccc
Q 022904 122 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 122 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 156 (290)
+. ...+..+. +.++++.++++|+.++.+..
T Consensus 99 iI---Ndis~~~~--~~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 99 II---NDVSGGRG--DPEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred EE---EeCCCCCC--ChHHHHHHHHcCCCEEEECc
Confidence 22 12222211 14789999999999998753
No 55
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=66.27 E-value=1.3e+02 Score=29.05 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHH----cCCccEEEcc--CCCHHHHHHHHHcCC
Q 022904 47 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE----EGKIKTVALT--NFDTERLRIILENGI 120 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~----~G~ir~iGvs--~~~~~~l~~~~~~~~ 120 (290)
.+.+.|.+.++. ++..|...+-|+.=..| ...+ ++-+.+.++.+++ .|.++.++++ ..+.+++..+.+.|+
T Consensus 115 Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~-~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaGv 191 (469)
T PRK09613 115 LTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCD-IEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAGI 191 (469)
T ss_pred CCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCC-HHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcCC
Confidence 478999999976 56799877655422222 2223 6777777777776 4677766654 568899999998876
Q ss_pred C-eeeeeccccccc-----c-----Ch--hhhHHHHHHHhCCeEEecccc
Q 022904 121 P-VVSNQVQHSVVD-----M-----RP--QQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 121 ~-~~~~q~~~n~~~-----~-----~~--~~~~~~~~~~~gi~via~spl 157 (290)
. +.+.|-.||.-. . .+ .-+.++.+++.||.-++.+.+
T Consensus 192 ~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L 241 (469)
T PRK09613 192 GTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVL 241 (469)
T ss_pred CEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEE
Confidence 5 666777765311 1 11 235788889999885555444
No 56
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=66.13 E-value=1.3e+02 Score=28.84 Aligned_cols=103 Identities=16% Similarity=0.145 Sum_probs=63.5
Q ss_pred hhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCcc---HHHHHHHH
Q 022904 14 LKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG---YLDALNHL 90 (290)
Q Consensus 14 sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~---~~~~~~~l 90 (290)
.|+-|-++|+++.++.+.+-++|.|=+.+. .-.+++..-+++.-++.+ +.++.++.|...... ...++++|
T Consensus 105 g~~kL~~~I~e~~~~~~P~~I~V~ttC~~~---lIGdDi~~v~~e~~~~~~---~~vi~v~t~gf~g~~~~G~~~a~~al 178 (456)
T TIGR01283 105 GEKKLFHAIREIVERYHPPAVFVYSTCVPG---LIGDDLEAVCKAAAEKTG---IPVIPVDSEGFYGSKNLGNKLACDAL 178 (456)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEECCChHH---HhcCCHHHHHHHHHHHhC---CCEEEEECCCCccchhHHHHHHHHHH
Confidence 577888889999877667778888887653 233555555555444554 578999988754331 23344444
Q ss_pred HHHH-H------------cCCccEEEccCC--CHHHHHHHHHc-CCCe
Q 022904 91 TDLK-E------------EGKIKTVALTNF--DTERLRIILEN-GIPV 122 (290)
Q Consensus 91 ~~L~-~------------~G~ir~iGvs~~--~~~~l~~~~~~-~~~~ 122 (290)
-+.. . .+.|--||-.+. +.+.+..+++. |+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gl~v 226 (456)
T TIGR01283 179 LKHVIGTREPEPIPVGTTVHDINLIGEFNVAGEFWHVKPLLEKLGIRV 226 (456)
T ss_pred HHHHhccCCcccccccCCCCcEEEEcCCCCcccHHHHHHHHHHcCCeE
Confidence 4332 1 356777885543 34567777775 4443
No 57
>PRK07328 histidinol-phosphatase; Provisional
Probab=65.50 E-value=91 Score=27.34 Aligned_cols=64 Identities=16% Similarity=0.340 Sum_probs=37.1
Q ss_pred HHHHHHHcCCccEEEccCCC---------------HHHHHHHHHcCCCeeeeeccc--cccccChhhhHHHHHHHhCCeE
Q 022904 89 HLTDLKEEGKIKTVALTNFD---------------TERLRIILENGIPVVSNQVQH--SVVDMRPQQKMAELCQLTGVKL 151 (290)
Q Consensus 89 ~l~~L~~~G~ir~iGvs~~~---------------~~~l~~~~~~~~~~~~~q~~~--n~~~~~~~~~~~~~~~~~gi~v 151 (290)
.+.++.+.|.+..+|--..- .+.++.+.+.+..+.+|--.+ ..-+..+...+++.|++.|+.+
T Consensus 145 ~~~~~~~~~~~dvlgH~d~i~~~~~~~~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~i 224 (269)
T PRK07328 145 LVEQAARSGLFDIIGHPDLIKKFGHRPREDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPV 224 (269)
T ss_pred HHHHHHHcCCCCEeeCccHHHHcCCCCchhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCE
Confidence 46777888998888855320 122333333355566554221 1223344567999999999875
Q ss_pred E
Q 022904 152 I 152 (290)
Q Consensus 152 i 152 (290)
+
T Consensus 225 t 225 (269)
T PRK07328 225 V 225 (269)
T ss_pred E
Confidence 4
No 58
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=65.39 E-value=46 Score=32.18 Aligned_cols=103 Identities=14% Similarity=0.177 Sum_probs=65.8
Q ss_pred ChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCC----------------CCCHHHHHHHHHHHHhhhCCCcccEEEEec
Q 022904 12 GLLKISMASSSIEFVERGHQSSWISLTKWVPPPV----------------KMTSSIVRESIDVSRRRMDVPCLDMLQFHW 75 (290)
Q Consensus 12 G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~----------------~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~ 75 (290)
|.-|.++-.+-+.+ ...-+.++||++=+|.... +.+++.| -+|+.+.|+|.+-
T Consensus 138 GTyeT~~~aark~~-g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~vEvd~~ri-------~kR~~~g~ld~~~--- 206 (546)
T PF01175_consen 138 GTYETFLNAARKHF-GGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLIVEVDPSRI-------EKRLEQGYLDEVT--- 206 (546)
T ss_dssp HHHHHHHHHHHHHS-TTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEEEES-HHHH-------HHHHHTTSSSEEE---
T ss_pred hhhHHHHHHHHHhc-CCCCcceEEEEecccccccchHHHHHhcCceEEEEEECHHHH-------HHHHhCCCeeEEc---
Confidence 77787777544433 4446788999999884321 2233443 4577778999763
Q ss_pred CCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCC--Ceeeeecccc
Q 022904 76 WDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGI--PVVSNQVQHS 130 (290)
Q Consensus 76 p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~--~~~~~q~~~n 130 (290)
+++++++...++.+++|+..+||+-.--.+.+.++++.++ ++..-|+..|
T Consensus 207 -----~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS~H 258 (546)
T PF01175_consen 207 -----DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTSAH 258 (546)
T ss_dssp -----SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SSTT
T ss_pred -----CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCccc
Confidence 2279999999999999999999999888899999998754 3555677663
No 59
>PRK13753 dihydropteroate synthase; Provisional
Probab=64.95 E-value=1e+02 Score=27.53 Aligned_cols=102 Identities=12% Similarity=0.083 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEEe-cCCCCCcc----HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCC
Q 022904 47 MTSSIVRESIDVSRRRMDVPCLDMLQFH-WWDYSNPG----YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 121 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH-~p~~~~~~----~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 121 (290)
++.+.+.+.+++.+ .-|.|-||+=--- +|...... +..+...++.+++.+. .|.|.++.++.++++++.|..
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGad 98 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGVG 98 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCCC
Confidence 36677777777765 5688888885533 35433211 3445578888888753 489999999999999987655
Q ss_pred eeeeeccccccccChhhhHHHHHHHhCCeEEecccc
Q 022904 122 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 122 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 157 (290)
+.-. .+-+. +..+.+.+.+.|++++.+--.
T Consensus 99 iIND---Vsg~~---d~~~~~vva~~~~~vVlmH~~ 128 (279)
T PRK13753 99 YLND---IQGFP---DPALYPDIAEADCRLVVMHSA 128 (279)
T ss_pred EEEe---CCCCC---chHHHHHHHHcCCCEEEEecC
Confidence 4322 22221 346889999999999986543
No 60
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=63.53 E-value=25 Score=29.85 Aligned_cols=68 Identities=12% Similarity=0.252 Sum_probs=45.6
Q ss_pred HHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEcc-CCCHHHHHHHHHcCCCeeeeecccc
Q 022904 59 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHS 130 (290)
Q Consensus 59 SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~q~~~n 130 (290)
....+|+|++=+.+......... .+....+.... .+.++.+||. |-+++.+.++.+ ..+++++|++-+
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~--~~~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~-~~~~d~vQLHG~ 84 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQT--ITQIKKLASAV-PNHIDKVCVVVNPDLTTIEHILS-NTSINTIQLHGT 84 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCC--HHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHH-hCCCCEEEECCC
Confidence 34569999998875443222222 34444444433 3568889987 778899998887 577899999864
No 61
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=63.46 E-value=1.4e+02 Score=28.30 Aligned_cols=104 Identities=8% Similarity=0.051 Sum_probs=60.6
Q ss_pred ccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhC-CCcccEEEEecCCCCCccH---
Q 022904 8 TYGMGLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMD-VPCLDMLQFHWWDYSNPGY--- 83 (290)
Q Consensus 8 ~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg-~d~iDl~~lH~p~~~~~~~--- 83 (290)
+|| .|+-|-++|+++.++.+.+-++|.|=+.+.- -.+++..-+++.-++.. ...+.++.+|.|+......
T Consensus 62 VfG---g~~~L~~~i~~~~~~~~p~~I~V~ttc~~ei---IGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~~G~ 135 (417)
T cd01966 62 ILG---GGENLEEALDTLAERAKPKVIGLLSTGLTET---RGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSLEDGW 135 (417)
T ss_pred EEC---CHHHHHHHHHHHHHhcCCCEEEEECCCcccc---cccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHH
Confidence 566 5777778888887666667788888886533 33555555555444421 0146799999987664322
Q ss_pred HHHHHHHH-HHH--------HcCCccEEEccCCCHHHHHHHHH
Q 022904 84 LDALNHLT-DLK--------EEGKIKTVALTNFDTERLRIILE 117 (290)
Q Consensus 84 ~~~~~~l~-~L~--------~~G~ir~iGvs~~~~~~l~~~~~ 117 (290)
+.++++|- .+. ..++|--||-++.++..+.++.+
T Consensus 136 ~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~ 178 (417)
T cd01966 136 AAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKD 178 (417)
T ss_pred HHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHH
Confidence 33333332 221 24567778755544444444443
No 62
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=62.37 E-value=65 Score=26.98 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=70.3
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCC--H
Q 022904 32 SSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD--T 109 (290)
Q Consensus 32 ~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~--~ 109 (290)
....+.-.+.+. ...-+.....+...++..+...-.+.+--...........+...+..|++.|- .+++.+++ .
T Consensus 82 ~~~~l~ini~~~--~l~~~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~ 157 (240)
T cd01948 82 PDLRLSVNLSAR--QLRDPDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGY 157 (240)
T ss_pred CCeEEEEECCHH--HhCCcHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcH
Confidence 444555555432 11235566777888888877643333333222222224568899999999998 47776654 3
Q ss_pred HHHHHHHHcCCCeeeeeccccccccC--------hhhhHHHHHHHhCCeEEec
Q 022904 110 ERLRIILENGIPVVSNQVQHSVVDMR--------PQQKMAELCQLTGVKLITY 154 (290)
Q Consensus 110 ~~l~~~~~~~~~~~~~q~~~n~~~~~--------~~~~~~~~~~~~gi~via~ 154 (290)
..+..+.. .+++++-+..+.+... .-..++..|+..|+.+++-
T Consensus 158 ~~~~~l~~--~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 208 (240)
T cd01948 158 SSLSYLKR--LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAE 208 (240)
T ss_pred hhHHHHHh--CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEE
Confidence 44445543 5577666665544331 1246889999999999884
No 63
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=62.09 E-value=47 Score=26.31 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=47.7
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhC--CCcccEEEEecCCCCCccHHHHHHHHHHHHHc
Q 022904 30 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 96 (290)
Q Consensus 30 ~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~ 96 (290)
.|=.|.|+-|++. ...+..|++.+.++++.+. ....|++++...... ..+.++...|..+.++
T Consensus 46 ~RlG~sVSKKvg~---AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~-~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGK---AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ-PDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEeccccc---chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC-CCHHHHHHHHHHHHHH
Confidence 3556788888765 3357888888888887763 457899999999877 4488888888877765
No 64
>PRK06424 transcription factor; Provisional
Probab=61.45 E-value=29 Score=27.67 Aligned_cols=29 Identities=10% Similarity=0.082 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHh
Q 022904 201 FQVLLQTLKRIASKHGVSIPVVAVRYILD 229 (290)
Q Consensus 201 ~~~~~~~l~~la~~~g~s~~~~al~~~l~ 229 (290)
...+-+.+..+.++.|+|..++|-+--++
T Consensus 82 ~~~~g~~Ir~lRe~~GLSQ~eLA~~iGvs 110 (144)
T PRK06424 82 VEDYAELVKNARERLSMSQADLAAKIFER 110 (144)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCCC
Confidence 34445778888889999999888654433
No 65
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=61.17 E-value=1.1e+02 Score=26.72 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEE-EEecCCCCCcc----HHHHHHHHHHHHHc-CCccEEEccCCCHHHHHHHHHcCC
Q 022904 47 MTSSIVRESIDVSRRRMDVPCLDML-QFHWWDYSNPG----YLDALNHLTDLKEE-GKIKTVALTNFDTERLRIILENGI 120 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~Lg~d~iDl~-~lH~p~~~~~~----~~~~~~~l~~L~~~-G~ir~iGvs~~~~~~l~~~~~~~~ 120 (290)
.+++.+.+.+++.+ .-|.++||+= .--+|+..... .+.+...++.+++. +. -+.+.++.++.++++++.|.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 36677777777665 6699999992 11123322111 12366677777766 43 48999999999999998754
Q ss_pred CeeeeeccccccccChhhhHHHHHHHhCCeEEecc
Q 022904 121 PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 121 ~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 155 (290)
++. +-+ +... ..++++.++++|..++.+.
T Consensus 97 ~iI-Nsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 DII-NDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CEE-EEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 432 222 2221 3478999999999999954
No 66
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=60.16 E-value=1.7e+02 Score=28.47 Aligned_cols=99 Identities=8% Similarity=0.061 Sum_probs=52.7
Q ss_pred hhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHH
Q 022904 14 LKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDL 93 (290)
Q Consensus 14 sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L 93 (290)
+|+.|-+.|++..++.+.+=++|.|=+.+.- -.|++..-+++.-+++ -++++.+|.|..........-.+++.+
T Consensus 69 g~~kL~~~I~~~~~~~~P~~I~V~tTC~~ei---IGDDi~~v~~~~~~~~---~~pVi~v~t~~f~g~~~~g~~~~l~~l 142 (513)
T CHL00076 69 SQEKVVDNITRKDKEERPDLIVLTPTCTSSI---LQEDLQNFVDRASIES---DSDVILADVNHYRVNELQAADRTLEQI 142 (513)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEECCCCchhh---hhcCHHHHHHHhhccc---CCCEEEeCCCCCcccHHHHHHHHHHHH
Confidence 3444555566665555656666666664421 1233333333332233 368999999866544232222233333
Q ss_pred H------------------HcCCccEEEccC------CCHHHHHHHHHc
Q 022904 94 K------------------EEGKIKTVALTN------FDTERLRIILEN 118 (290)
Q Consensus 94 ~------------------~~G~ir~iGvs~------~~~~~l~~~~~~ 118 (290)
+ .+++|--||.++ .+...+.++++.
T Consensus 143 v~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~ 191 (513)
T CHL00076 143 VRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQD 191 (513)
T ss_pred HHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHH
Confidence 3 235677888764 244566666663
No 67
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=60.02 E-value=1.2e+02 Score=26.69 Aligned_cols=105 Identities=14% Similarity=0.259 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEEecCCC------CCccHHHHHHHHHHHHHc-CCccEEEccCCC---------H
Q 022904 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY------SNPGYLDALNHLTDLKEE-GKIKTVALTNFD---------T 109 (290)
Q Consensus 46 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~------~~~~~~~~~~~l~~L~~~-G~ir~iGvs~~~---------~ 109 (290)
+.++..+...+... ..+|++ +++.|-.-.+ ....+....+-++.+++. |. -+||+..+. .
T Consensus 69 ~~n~~~l~~~L~~~-~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~-f~ig~a~~Peghp~~~~~~ 144 (272)
T TIGR00676 69 GATREEIREILREY-RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGD-FDIGVAAYPEKHPEAPNLE 144 (272)
T ss_pred CCCHHHHHHHHHHH-HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCC-eeEEEEeCCCCCCCCCCHH
Confidence 34567777777644 677765 4554544211 111134455555555554 43 478877532 1
Q ss_pred HHHHHHHHc---CCCeeeeeccccccccChhhhHHHHHHHhCCeEEecccccccc
Q 022904 110 ERLRIILEN---GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 110 ~~l~~~~~~---~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
..+..+.+. |..+.+.|.-|++ ... .++++.|++.||.+ |+--|+
T Consensus 145 ~~~~~L~~K~~aGA~f~iTQ~~fd~--~~~-~~~~~~~~~~gi~~----PIi~Gi 192 (272)
T TIGR00676 145 EDIENLKRKVDAGADYAITQLFFDN--DDY-YRFVDRCRAAGIDV----PIIPGI 192 (272)
T ss_pred HHHHHHHHHHHcCCCeEeeccccCH--HHH-HHHHHHHHHcCCCC----CEeccc
Confidence 344545444 6778889999987 332 47889999998765 454454
No 68
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=59.79 E-value=1.7e+02 Score=28.14 Aligned_cols=109 Identities=14% Similarity=0.103 Sum_probs=63.6
Q ss_pred cccCCChhhHHhhhchHHHhhhCC-CCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhC---CC--cccEEEEecCCCCC
Q 022904 7 FTYGMGLLKISMASSSIEFVERGH-QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMD---VP--CLDMLQFHWWDYSN 80 (290)
Q Consensus 7 ~~Yg~G~sE~~lG~~~~~~~~~~~-R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg---~d--~iDl~~lH~p~~~~ 80 (290)
-+|| .|+-|-++|+++.++.+ .+=++|.|-+.+. .-.+++..-+++.-++++ .. .+.++.+|.|+...
T Consensus 72 ~VfG---g~~~L~~ai~~~~~~~~~p~~i~v~ttc~~e---iiGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~g 145 (461)
T TIGR02931 72 AVFG---ALDRVEEAVDVLLTRYPDVKVVPIITTCSTE---IIGDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVG 145 (461)
T ss_pred eEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHH---hhhcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCC
Confidence 4566 37778888988877775 4556677777543 233666666666655552 11 36799999887765
Q ss_pred ccH---HHHHHHHH-HHHH----cCCccEEEccC--CCHHHHHHHHHc-CCC
Q 022904 81 PGY---LDALNHLT-DLKE----EGKIKTVALTN--FDTERLRIILEN-GIP 121 (290)
Q Consensus 81 ~~~---~~~~~~l~-~L~~----~G~ir~iGvs~--~~~~~l~~~~~~-~~~ 121 (290)
... +.++.++- .+.. +++|--||-.+ -+.+.+.++++. ++.
T Consensus 146 s~~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~ 197 (461)
T TIGR02931 146 SMITGYDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIE 197 (461)
T ss_pred cHHHHHHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCc
Confidence 432 33333333 2222 35677788543 244556666664 443
No 69
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=59.59 E-value=1.3e+02 Score=26.94 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=44.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCC-c-cEEEccCCCHHHHHHHH
Q 022904 41 VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-I-KTVALTNFDTERLRIIL 116 (290)
Q Consensus 41 ~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~-i-r~iGvs~~~~~~l~~~~ 116 (290)
+.++.-.+.+.+++-++...+ +. +-+.+-.--+|+.. .++.++.|.++++.|. + -++|+-+.+.+.+..+-
T Consensus 85 ggt~t~l~~~~L~~l~~~i~~-~~-~~~~isi~trpd~l---~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~ 157 (302)
T TIGR01212 85 AYTNTYAPVEVLKEMYEQALS-YD-DVVGLSVGTRPDCV---PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKIN 157 (302)
T ss_pred CCCcCCCCHHHHHHHHHHHhC-CC-CEEEEEEEecCCcC---CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHc
Confidence 333334577888887777775 21 11222221234432 2578889999999998 5 57999988887776554
No 70
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=59.49 E-value=1.2e+02 Score=26.59 Aligned_cols=100 Identities=10% Similarity=0.056 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc--CCCeee
Q 022904 47 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVS 124 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~ 124 (290)
.+.+.+.+...+.. .-|.|.||+=.= +....+ .+.+...++.+++.-.+ -|.+.++.++.++++++. +.+ .+
T Consensus 22 ~d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~eE-~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~-iI 95 (261)
T PRK07535 22 KDAAFIQKLALKQA-EAGADYLDVNAG--TAVEEE-PETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPP-LI 95 (261)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCC--CCchhH-HHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCC-EE
Confidence 35667777766655 679999998643 222222 45666677777665332 488999999999999986 433 22
Q ss_pred eeccccccccChhhhHHHHHHHhCCeEEecc
Q 022904 125 NQVQHSVVDMRPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 125 ~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 155 (290)
|=+ |..... ...+++.+++.|+.++...
T Consensus 96 NsI--s~~~~~-~~~~~~l~~~~g~~vv~m~ 123 (261)
T PRK07535 96 NSV--SAEGEK-LEVVLPLVKKYNAPVVALT 123 (261)
T ss_pred EeC--CCCCcc-CHHHHHHHHHhCCCEEEEe
Confidence 222 221111 2478999999999999854
No 71
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=58.64 E-value=1.3e+02 Score=26.41 Aligned_cols=107 Identities=10% Similarity=-0.000 Sum_probs=76.4
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCee
Q 022904 44 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV 123 (290)
Q Consensus 44 ~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 123 (290)
...++.+...+-.+-..+-+++++|-|=.+.++....++..+++++.++|.++|.+ .+=+|+-++...+++.+. .++
T Consensus 70 aG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~-vlpyc~dd~~~ar~l~~~--G~~ 146 (248)
T cd04728 70 AGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFT-VLPYCTDDPVLAKRLEDA--GCA 146 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHc--CCC
Confidence 34678899999999999999999999999998887777789999999999999987 344666688888888875 233
Q ss_pred eeeccccccccCh---hhhHHHHHHH-hCCeEEe
Q 022904 124 SNQVQHSVVDMRP---QQKMAELCQL-TGVKLIT 153 (290)
Q Consensus 124 ~~q~~~n~~~~~~---~~~~~~~~~~-~gi~via 153 (290)
+++.-=.++-... ..++++..++ .++.|++
T Consensus 147 ~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~ 180 (248)
T cd04728 147 AVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIV 180 (248)
T ss_pred EeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEE
Confidence 3322111211110 2355666666 4677766
No 72
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=58.07 E-value=40 Score=30.36 Aligned_cols=73 Identities=11% Similarity=0.108 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeeeecccccccc-ChhhhHHHHHHHhCCeEEeccccccc
Q 022904 87 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 87 ~~~l~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl~~G 160 (290)
++.+.+|++...|. ..|=+-++.+.+..+++. ...+++|+..+.+-. ..-..+..+|+++|+.++..+-+..+
T Consensus 217 ~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~-~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 217 DDGLAYLRDKSPLPIMADESCFSAADAARLAGG-GAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhc-CCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 34455566555444 234445667777777663 346666665443211 11357899999999999987655443
No 73
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=57.41 E-value=84 Score=29.31 Aligned_cols=98 Identities=9% Similarity=0.079 Sum_probs=62.4
Q ss_pred hHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCC-cc---HHHHHHHH
Q 022904 15 KISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-PG---YLDALNHL 90 (290)
Q Consensus 15 E~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~-~~---~~~~~~~l 90 (290)
|+.|-++|+++.++.+.+=++|.|=+.+. .-.+++..-+++.-++.+ +.++.+|.|.... .. .+.++++|
T Consensus 72 ~~~L~~~i~~~~~~~~P~~i~v~~tC~~~---~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~~~G~~~a~~al 145 (406)
T cd01967 72 EKKLKKAIKEAYERFPPKAIFVYSTCPTG---LIGDDIEAVAKEASKELG---IPVIPVNCEGFRGVSQSLGHHIANDAI 145 (406)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCchh---hhccCHHHHHHHHHHhhC---CCEEEEeCCCeeCCcccHHHHHHHHHH
Confidence 78888889998777666668888777553 233555555555444554 7899999885444 21 34555555
Q ss_pred HHHH---------HcCCccEEEccCC--CHHHHHHHHHc
Q 022904 91 TDLK---------EEGKIKTVALTNF--DTERLRIILEN 118 (290)
Q Consensus 91 ~~L~---------~~G~ir~iGvs~~--~~~~l~~~~~~ 118 (290)
-+.. +++.|--||..++ +.+.+..+++.
T Consensus 146 ~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~ 184 (406)
T cd01967 146 LDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEE 184 (406)
T ss_pred HHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHH
Confidence 5443 2345777888765 33666777764
No 74
>PRK00208 thiG thiazole synthase; Reviewed
Probab=57.03 E-value=1.4e+02 Score=26.26 Aligned_cols=107 Identities=10% Similarity=-0.004 Sum_probs=76.9
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCee
Q 022904 44 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV 123 (290)
Q Consensus 44 ~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 123 (290)
...++.+...+-.+-.++-+++++|-|=.+.++....++..+++++.+.|.++|.+- +=+|+-++....++.+. .++
T Consensus 70 aG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~--G~~ 146 (250)
T PRK00208 70 AGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA--GCA 146 (250)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc--CCC
Confidence 346788999999999999999999999999988887887899999999999999873 44666688888888875 334
Q ss_pred eeeccccccccCh---hhhHHHHHHHh-CCeEEe
Q 022904 124 SNQVQHSVVDMRP---QQKMAELCQLT-GVKLIT 153 (290)
Q Consensus 124 ~~q~~~n~~~~~~---~~~~~~~~~~~-gi~via 153 (290)
+++.-=.++-... ..++++..++. ++.|++
T Consensus 147 ~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIv 180 (250)
T PRK00208 147 AVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIV 180 (250)
T ss_pred EeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 3322111111110 23456666664 777776
No 75
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=56.87 E-value=85 Score=27.54 Aligned_cols=17 Identities=12% Similarity=0.358 Sum_probs=14.7
Q ss_pred hhHHHHHHHhCCeEEec
Q 022904 138 QKMAELCQLTGVKLITY 154 (290)
Q Consensus 138 ~~~~~~~~~~gi~via~ 154 (290)
-.++.+|++++|.||+-
T Consensus 136 v~Li~~c~~~ki~vIss 152 (263)
T COG1179 136 VALIAYCRRNKIPVISS 152 (263)
T ss_pred HHHHHHHHHcCCCEEee
Confidence 46899999999999973
No 76
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=56.60 E-value=1.8e+02 Score=27.46 Aligned_cols=86 Identities=14% Similarity=0.126 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeee
Q 022904 45 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 124 (290)
Q Consensus 45 ~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 124 (290)
.+++.+.+.+.+++..+. -+|.+-+|. .-..+.++.+++.| |..|+-+-+..-+..++...
T Consensus 135 ~~mt~d~~~~~ie~qa~d----GVDfmTiH~--------Gi~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~~----- 195 (423)
T TIGR00190 135 EDMDEDDMFRAIEKQAKD----GVDFMTIHA--------GVLLEYVERLKRSG--RITGIVSRGGAILAAWMLHH----- 195 (423)
T ss_pred hhCCHHHHHHHHHHHHHh----CCCEEEEcc--------chhHHHHHHHHhCC--CccCeecCcHHHHHHHHHHc-----
Confidence 367888888888888753 468889997 24566788888888 45888888888877777641
Q ss_pred eeccccccccChhhhHHHHHHHhCCeEE
Q 022904 125 NQVQHSVVDMRPQQKMAELCQLTGVKLI 152 (290)
Q Consensus 125 ~q~~~n~~~~~~~~~~~~~~~~~gi~vi 152 (290)
-.=||+-..++ .+++.|+++++.+.
T Consensus 196 --~~ENPlye~fD-~lLeI~~~yDVtlS 220 (423)
T TIGR00190 196 --HKENPLYKNFD-YILEIAKEYDVTLS 220 (423)
T ss_pred --CCcCchHHHHH-HHHHHHHHhCeeee
Confidence 12244434443 79999999999875
No 77
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=56.36 E-value=95 Score=29.37 Aligned_cols=104 Identities=12% Similarity=0.060 Sum_probs=62.9
Q ss_pred hhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCcc---HHHHHHHH
Q 022904 14 LKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG---YLDALNHL 90 (290)
Q Consensus 14 sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~---~~~~~~~l 90 (290)
.|+-|-++|++..++.+.+-++|.|=+.+. .-.+++..-+++. ++++ ++++.+|.|...... .+.++++|
T Consensus 70 g~~kL~~~I~~~~~~~~p~~I~V~ttC~~~---~IGdDi~~v~~~~-~~~~---~~vi~v~t~gf~g~~~~G~~~a~~al 142 (427)
T cd01971 70 GEDRLRELIKSTLSIIDADLFVVLTGCIAE---IIGDDVGAVVSEF-QEGG---APIVYLETGGFKGNNYAGHEIVLKAI 142 (427)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEcCCcHH---HhhcCHHHHHHHh-hhcC---CCEEEEECCCcCcccccHHHHHHHHH
Confidence 367777888888766666778888877652 2335555555554 4554 689999998766543 23344444
Q ss_pred HH-HHH------cCCccEEEccC-------CCHHHHHHHHHc-CCCeee
Q 022904 91 TD-LKE------EGKIKTVALTN-------FDTERLRIILEN-GIPVVS 124 (290)
Q Consensus 91 ~~-L~~------~G~ir~iGvs~-------~~~~~l~~~~~~-~~~~~~ 124 (290)
-+ +.. ++.|.-||..+ .+.+.+.++++. ++.+..
T Consensus 143 ~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~ 191 (427)
T cd01971 143 IDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNI 191 (427)
T ss_pred HHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEE
Confidence 32 322 24577788642 234667777775 544433
No 78
>PLN02363 phosphoribosylanthranilate isomerase
Probab=55.85 E-value=39 Score=29.72 Aligned_cols=76 Identities=12% Similarity=0.116 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEcc-CCCHHHHHHHHHcCCCeeeee
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 126 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~q 126 (290)
+.++++..+ ++|.|+|=+.+......... .+....+-.......++.+||. +-+++.+.++++ ..+++++|
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs--~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~-~~~ld~VQ 127 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKRSIS--LSVAKEISQVAREGGAKPVGVFVDDDANTILRAAD-SSDLELVQ 127 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCCcCC--HHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHH-hcCCCEEE
Confidence 456665554 58999998875443222222 3444444444433246779986 778888888887 57799999
Q ss_pred ccccc
Q 022904 127 VQHSV 131 (290)
Q Consensus 127 ~~~n~ 131 (290)
++-+.
T Consensus 128 LHG~e 132 (256)
T PLN02363 128 LHGNG 132 (256)
T ss_pred ECCCC
Confidence 97643
No 79
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=55.74 E-value=53 Score=27.88 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccC-CCHHHHHHHHHcCCCeeeee
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 126 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~q 126 (290)
+++...+-+ +.|-+-|++.+- +-+ . ....++.+++++++..=-.||.-+ .+.++++.+++.+-.|.
T Consensus 18 ~~e~a~~~~-~al~~~Gi~~iE---it~---~---t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi--- 84 (204)
T TIGR01182 18 DVDDALPLA-KALIEGGLRVLE---VTL---R---TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI--- 84 (204)
T ss_pred CHHHHHHHH-HHHHHcCCCEEE---EeC---C---CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE---
Confidence 345554444 445566765443 333 1 235666777777764435688765 58999999998876555
Q ss_pred ccccccccChhhhHHHHHHHhCCeEEe
Q 022904 127 VQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 127 ~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
.+| ..+.+++++|+++||.++.
T Consensus 85 --vsP---~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 --VSP---GLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred --ECC---CCCHHHHHHHHHcCCcEEC
Confidence 222 2356899999999998886
No 80
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=55.58 E-value=1.8e+02 Score=27.24 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=65.6
Q ss_pred HHHHHHHHHHH-----------hhhCCCcccEEEEecCCCCCc----cHHHHHHHHHHHHHc-CCccEEEcc---CCCHH
Q 022904 50 SIVRESIDVSR-----------RRMDVPCLDMLQFHWWDYSNP----GYLDALNHLTDLKEE-GKIKTVALT---NFDTE 110 (290)
Q Consensus 50 ~~i~~~~~~SL-----------~~Lg~d~iDl~~lH~p~~~~~----~~~~~~~~l~~L~~~-G~ir~iGvs---~~~~~ 110 (290)
+.+++.+++.. +.++ .|++.||.-..+.. .-.+..+..++..+. +.---|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 66777777655 5565 58999997543322 134666666666443 333334433 56889
Q ss_pred HHHHHHHc--CCCeeeeeccccccccChhhhHHHHHHHhCCeEEeccccccc
Q 022904 111 RLRIILEN--GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 111 ~l~~~~~~--~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G 160 (290)
.+.++++. +-++-++-..... +. ..+.+.|+++|..+++++|..-|
T Consensus 205 VLeaaLe~~~G~kpLL~SAt~e~---Ny-~~ia~lAk~yg~~Vvv~s~~Din 252 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASANLDL---DY-EKIANAAKKYGHVVLSWTIMDIN 252 (389)
T ss_pred HHHHHHHHhCCCCcEEEecCchh---hH-HHHHHHHHHhCCeEEEEcCCcHH
Confidence 99999987 3244433222221 22 47899999999999999988554
No 81
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=55.25 E-value=1.9e+02 Score=27.38 Aligned_cols=86 Identities=16% Similarity=0.172 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeee
Q 022904 45 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 124 (290)
Q Consensus 45 ~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 124 (290)
.+++.+.+.+.+++..+. =+|.+-+|. .-..+.++.+++.|. ..|+-+-+.+-+..++...
T Consensus 138 ~~mt~d~~~~~ie~qa~~----GVDfmTiHc--------Gi~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n----- 198 (431)
T PRK13352 138 VDMTEDDLFDVIEKQAKD----GVDFMTIHC--------GVTRETLERLKKSGR--IMGIVSRGGSFLAAWMLHN----- 198 (431)
T ss_pred hhCCHHHHHHHHHHHHHh----CCCEEEEcc--------chhHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHc-----
Confidence 367888998888888753 468899997 245567888888874 5888888888877777641
Q ss_pred eeccccccccChhhhHHHHHHHhCCeEE
Q 022904 125 NQVQHSVVDMRPQQKMAELCQLTGVKLI 152 (290)
Q Consensus 125 ~q~~~n~~~~~~~~~~~~~~~~~gi~vi 152 (290)
-.=||+-..++ .+++.|+++++.+.
T Consensus 199 --~~ENPlye~fD-~lLeI~~~yDVtlS 223 (431)
T PRK13352 199 --NKENPLYEHFD-YLLEILKEYDVTLS 223 (431)
T ss_pred --CCcCchHHHHH-HHHHHHHHhCeeee
Confidence 12244434554 79999999999875
No 82
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=55.05 E-value=54 Score=28.63 Aligned_cols=73 Identities=10% Similarity=0.072 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeeeecccccccc-ChhhhHHHHHHHhCCeEEeccccccc
Q 022904 87 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 87 ~~~l~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl~~G 160 (290)
++.+.+|++.-.+. ..|=+-++...+..+++. ..++++|+..+..-. ..-..+...|+++|+.++..+.+..|
T Consensus 169 ~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~-~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 169 LEGRAALARATDTPIMADESAFTPHDAFRELAL-GAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHh-CCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchH
Confidence 34455555554443 334445566777776652 346666666554321 12357899999999999987666444
No 83
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=54.52 E-value=1.5e+02 Score=26.95 Aligned_cols=130 Identities=14% Similarity=0.078 Sum_probs=58.9
Q ss_pred HhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHc
Q 022904 17 SMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 96 (290)
Q Consensus 17 ~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~ 96 (290)
-+-+++..+.....=.+|+++. .++.-.+.+.+.+-++...+ ...+..+-+|.-........-.-+.++.|++.
T Consensus 123 e~~~~i~~i~~~~~I~~VilSG---GDPl~~~~~~L~~ll~~l~~---i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 123 ELDAAFAYIADHPEIWEVILTG---GDPLVLSPRRLGDIMARLAA---IDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred HHHHHHHHHHhCCCccEEEEeC---CCcccCCHHHHHHHHHHHHh---CCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 3444444453221113345443 33333344555555555433 33556666774211110011112445567777
Q ss_pred CCccEEEccCCCHH----HHHHHHHc----CCCeeeeeccc-cccccCh--hhhHHHHHHHhCCeEEe
Q 022904 97 GKIKTVALTNFDTE----RLRIILEN----GIPVVSNQVQH-SVVDMRP--QQKMAELCQLTGVKLIT 153 (290)
Q Consensus 97 G~ir~iGvs~~~~~----~l~~~~~~----~~~~~~~q~~~-n~~~~~~--~~~~~~~~~~~gi~via 153 (290)
|+..+|++....+. ...++++. |+ ...+|..+ .-.+.+. -.++++++.+.||...-
T Consensus 197 g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi-~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyy 263 (321)
T TIGR03822 197 GKTVYVALHANHARELTAEARAACARLIDAGI-PMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYY 263 (321)
T ss_pred CCcEEEEecCCChhhcCHHHHHHHHHHHHcCC-EEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEE
Confidence 86556776643222 22222222 44 33355444 2223332 24678888888887443
No 84
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=54.45 E-value=1.8e+02 Score=26.85 Aligned_cols=77 Identities=18% Similarity=0.058 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHc-CC---ccEEEc--cCCCHHHHHHHHHc--CCCeeeeeccccccccCh--------hhhHHHHHHH
Q 022904 83 YLDALNHLTDLKEE-GK---IKTVAL--TNFDTERLRIILEN--GIPVVSNQVQHSVVDMRP--------QQKMAELCQL 146 (290)
Q Consensus 83 ~~~~~~~l~~L~~~-G~---ir~iGv--s~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~~--------~~~~~~~~~~ 146 (290)
++++.+++.+..+. |. +-|+=+ -|-+++.+.++.+. +.++.++-++||+..... -..+.+..++
T Consensus 225 l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L~~ 304 (344)
T PRK14464 225 PEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYLHR 304 (344)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHHHH
Confidence 67888888777654 32 122212 26678888888776 677889999999865421 1356777889
Q ss_pred hCCeEEecccccc
Q 022904 147 TGVKLITYGTVMG 159 (290)
Q Consensus 147 ~gi~via~spl~~ 159 (290)
+||.+..+...+.
T Consensus 305 ~gi~~tiR~~~G~ 317 (344)
T PRK14464 305 RGVLTKVRNSAGQ 317 (344)
T ss_pred CCceEEEECCCCC
Confidence 9999998877754
No 85
>PRK05414 urocanate hydratase; Provisional
Probab=54.43 E-value=34 Score=33.06 Aligned_cols=103 Identities=16% Similarity=0.152 Sum_probs=74.5
Q ss_pred ChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCC----------------CCCHHHHHHHHHHHHhhhCCCcccEEEEec
Q 022904 12 GLLKISMASSSIEFVERGHQSSWISLTKWVPPPV----------------KMTSSIVRESIDVSRRRMDVPCLDMLQFHW 75 (290)
Q Consensus 12 G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~----------------~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~ 75 (290)
|.-|.++..+=+.+ ...-+.++||++=+|.... +.+++ +.-+|+.+.|+|.+-
T Consensus 148 GTyeT~~~a~rk~f-~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~-------ri~kR~~~gyld~~~--- 216 (556)
T PRK05414 148 GTYETFAEAARQHF-GGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAVEVDES-------RIDKRLRTGYLDEKA--- 216 (556)
T ss_pred cHHHHHHHHHHHhc-CCCCceeEEEEecCCccccccHHHHHhcCceEEEEEECHH-------HHHHHHhCCcceeEc---
Confidence 78888887655544 2234788999998874211 11233 344678888998763
Q ss_pred CCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCC--eeeeecccc
Q 022904 76 WDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP--VVSNQVQHS 130 (290)
Q Consensus 76 p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~--~~~~q~~~n 130 (290)
.++++++...++.+++|+..+||+-.--.+.+.++++.++. +..-|+..|
T Consensus 217 -----~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaH 268 (556)
T PRK05414 217 -----DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSAH 268 (556)
T ss_pred -----CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCcccc
Confidence 23799999999999999999999998888999999987544 455676653
No 86
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.41 E-value=51 Score=27.91 Aligned_cols=88 Identities=11% Similarity=0.120 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccC-CCHHHHHHHHHcCCCeeeee
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 126 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~q 126 (290)
+++...+-++. |-+-|+..|- +-+- . .+..+.+++++++..=-.||.-+ .+.++++.+++.+..|.+
T Consensus 14 ~~~~a~~ia~a-l~~gGi~~iE---it~~---t---p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv-- 81 (201)
T PRK06015 14 DVEHAVPLARA-LAAGGLPAIE---ITLR---T---PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV-- 81 (201)
T ss_pred CHHHHHHHHHH-HHHCCCCEEE---EeCC---C---ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEE--
Confidence 34555554444 4456654443 3331 2 35666777777654334688765 589999999988765552
Q ss_pred ccccccccChhhhHHHHHHHhCCeEEe
Q 022904 127 VQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 127 ~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
+| ..+.+++++|+++||.++.
T Consensus 82 ---SP---~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 82 ---SP---GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred ---CC---CCCHHHHHHHHHcCCCEeC
Confidence 22 3356899999999999886
No 87
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=54.32 E-value=33 Score=33.02 Aligned_cols=103 Identities=19% Similarity=0.234 Sum_probs=74.4
Q ss_pred ChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCC----------------CCCHHHHHHHHHHHHhhhCCCcccEEEEec
Q 022904 12 GLLKISMASSSIEFVERGHQSSWISLTKWVPPPV----------------KMTSSIVRESIDVSRRRMDVPCLDMLQFHW 75 (290)
Q Consensus 12 G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~----------------~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~ 75 (290)
|.-|.++..+=+.+ ...-+..+||++=+|.... +.+++ +.-+|+.+.|+|.+.
T Consensus 139 GTyeT~~~aark~f-~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~-------ri~kR~~~gyld~~~--- 207 (545)
T TIGR01228 139 GTYETFAELARQHF-GGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVEVDES-------RIDKRLETKYCDEQT--- 207 (545)
T ss_pred cHHHHHHHHHHHhc-CCCCceeEEEEeCCCccccccHHHHHHcCceEEEEEECHH-------HHHHHHhcCcceeEc---
Confidence 78888877655554 2234788999988874211 11233 344678888998752
Q ss_pred CCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCC--eeeeecccc
Q 022904 76 WDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP--VVSNQVQHS 130 (290)
Q Consensus 76 p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~--~~~~q~~~n 130 (290)
+++++++...++.+++|+..+||+-.--.+.+.++++.++. +..-|+..|
T Consensus 208 -----~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaH 259 (545)
T TIGR01228 208 -----DSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAH 259 (545)
T ss_pred -----CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCccc
Confidence 33799999999999999999999998888999999987544 555676653
No 88
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=54.00 E-value=1.9e+02 Score=27.07 Aligned_cols=104 Identities=15% Similarity=0.146 Sum_probs=63.0
Q ss_pred hhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCcc---HHHHHHHH
Q 022904 14 LKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG---YLDALNHL 90 (290)
Q Consensus 14 sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~---~~~~~~~l 90 (290)
.|+.|-++|+++.++.+.+-++|.|-+.+.- -.+++..-+++.-++.+ +.++.+|.|...... .+.++++|
T Consensus 70 g~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~---iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~~G~~~a~~~l 143 (410)
T cd01968 70 GEKKLYKAILEIIERYHPKAVFVYSTCVVAL---IGDDIDAVCKTASEKFG---IPVIPVHSPGFVGNKNLGNKLACEAL 143 (410)
T ss_pred cHHHHHHHHHHHHHhCCCCEEEEECCCchhh---hccCHHHHHHHHHHhhC---CCEEEEECCCcccChhHHHHHHHHHH
Confidence 3778888899998776667788888776532 23555555555444443 579999988654431 23344444
Q ss_pred HHHHH---------cCCccEEEccCC--CHHHHHHHHHc-CCCee
Q 022904 91 TDLKE---------EGKIKTVALTNF--DTERLRIILEN-GIPVV 123 (290)
Q Consensus 91 ~~L~~---------~G~ir~iGvs~~--~~~~l~~~~~~-~~~~~ 123 (290)
-+... ++.|--||-.++ +.+.+.++++. ++++.
T Consensus 144 ~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~ 188 (410)
T cd01968 144 LDHVIGTEEPEPLTPYDINLIGEFNVAGELWGVKPLLEKLGIRVL 188 (410)
T ss_pred HHHhcCCCCcccCCCCcEEEECCCCCcccHHHHHHHHHHcCCeEE
Confidence 43321 466777884443 34567777765 54433
No 89
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=53.88 E-value=1.3e+02 Score=25.62 Aligned_cols=87 Identities=15% Similarity=0.106 Sum_probs=57.8
Q ss_pred ccEEEEecCCCCCccHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeeeecccccccc-ChhhhHHHHHH
Q 022904 68 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 145 (290)
Q Consensus 68 iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~ 145 (290)
.++.++-.|-+..+ ++.+.+|++...+. ..+=|.++.+.+..+++. ..++++|+..+.+-. ..-..+...|+
T Consensus 120 ~~i~~iEeP~~~~d-----~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~-~~~d~~~~k~~~~GGi~~~~~i~~~a~ 193 (229)
T cd00308 120 YGLAWIEEPCAPDD-----LEGYAALRRRTGIPIAADESVTTVDDALEALEL-GAVDILQIKPTRVGGLTESRRAADLAE 193 (229)
T ss_pred cCCCeEECCCCccC-----HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHc-CCCCEEecCccccCCHHHHHHHHHHHH
Confidence 56777777654332 45566777776665 345556678888777763 347777777665322 12357889999
Q ss_pred HhCCeEEeccccccc
Q 022904 146 LTGVKLITYGTVMGG 160 (290)
Q Consensus 146 ~~gi~via~spl~~G 160 (290)
++|+.++.++.+..|
T Consensus 194 ~~gi~~~~~~~~~s~ 208 (229)
T cd00308 194 AFGIRVMVHGTLESS 208 (229)
T ss_pred HcCCEEeecCCCCCH
Confidence 999999998776544
No 90
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=53.82 E-value=43 Score=31.44 Aligned_cols=117 Identities=13% Similarity=0.182 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc----CCCeeeeeccccccccChhhhHHHHHHHhC--CeEEeccccc
Q 022904 85 DALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GIPVVSNQVQHSVVDMRPQQKMAELCQLTG--VKLITYGTVM 158 (290)
Q Consensus 85 ~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~----~~~~~~~q~~~n~~~~~~~~~~~~~~~~~g--i~via~spl~ 158 (290)
.+++++.+..+ .+...+++.+-..++. |++|..+....| ++.++.+++.| +++++++
T Consensus 122 PiYqa~~~~~~-------~~~~mt~d~~~~~ie~qa~dGVDfmTiH~Gi~-------~~~~~~~~~~~R~~giVSRG--- 184 (423)
T TIGR00190 122 PIYQAAEKVHG-------AVEDMDEDDMFRAIEKQAKDGVDFMTIHAGVL-------LEYVERLKRSGRITGIVSRG--- 184 (423)
T ss_pred cHHHHHHHhcC-------ChhhCCHHHHHHHHHHHHHhCCCEEEEccchh-------HHHHHHHHhCCCccCeecCc---
Confidence 45555554431 6667788887777776 666666655554 46788887744 6666542
Q ss_pred cccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCcceeee
Q 022904 159 GGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMI 238 (290)
Q Consensus 159 ~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~~~al~~~l~~~~v~~~i~ 238 (290)
|.++.+ |. -.-..++.+-..++.+.+++++|+++++ +..+.-+.++.
T Consensus 185 Gs~~~~--------------------WM------~~~~~ENPlye~fD~lLeI~~~yDVtlS-------LGDglRPG~i~ 231 (423)
T TIGR00190 185 GAILAA--------------------WM------LHHHKENPLYKNFDYILEIAKEYDVTLS-------LGDGLRPGCIA 231 (423)
T ss_pred HHHHHH--------------------HH------HHcCCcCchHHHHHHHHHHHHHhCeeee-------ccCCcCCCccc
Confidence 222221 10 0111222233447899999999988642 23333333344
Q ss_pred cCCCCCHhHHHHhHh
Q 022904 239 GVRLGLAEHIQDTNA 253 (290)
Q Consensus 239 g~~~~~~~~l~enl~ 253 (290)
-++ ...|++|.+.
T Consensus 232 DA~--D~aQi~El~~ 244 (423)
T TIGR00190 232 DAT--DRAQISELIT 244 (423)
T ss_pred cCC--cHHHHHHHHH
Confidence 455 6666666553
No 91
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=53.01 E-value=52 Score=27.69 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccC-CCHHHHHHHHHcCCCeeeeec
Q 022904 49 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQV 127 (290)
Q Consensus 49 ~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~q~ 127 (290)
.+...+-+ +.|-+-|+. ++=+-.- .+ ..++.++.++++-.=-.+|.-+ .+.++++.+++.+-.|.+
T Consensus 19 ~~~a~~~~-~al~~gGi~---~iEiT~~---t~---~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fiv--- 85 (196)
T PF01081_consen 19 PEDAVPIA-EALIEGGIR---AIEITLR---TP---NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIV--- 85 (196)
T ss_dssp GGGHHHHH-HHHHHTT-----EEEEETT---ST---THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEE---
T ss_pred HHHHHHHH-HHHHHCCCC---EEEEecC---Cc---cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEE---
Confidence 34443333 344455643 4444432 22 3344455454432224588775 589999999998766653
Q ss_pred cccccccChhhhHHHHHHHhCCeEEe
Q 022904 128 QHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 128 ~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
+ ...+.+++++|+++||.++.
T Consensus 86 --S---P~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 86 --S---PGFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp --E---SS--HHHHHHHHHHTSEEEE
T ss_pred --C---CCCCHHHHHHHHHcCCcccC
Confidence 2 23456899999999999986
No 92
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=52.91 E-value=2.2e+02 Score=27.35 Aligned_cols=110 Identities=12% Similarity=0.138 Sum_probs=61.9
Q ss_pred cccCCChhhHHhhhchHHHhhhCC-CCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCC----cccEEEEecCCCCCc
Q 022904 7 FTYGMGLLKISMASSSIEFVERGH-QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVP----CLDMLQFHWWDYSNP 81 (290)
Q Consensus 7 ~~Yg~G~sE~~lG~~~~~~~~~~~-R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d----~iDl~~lH~p~~~~~ 81 (290)
.+|| .|+-|-++|+++.++.+ .+=++|.|-+.+.- -.|++..-+++.-++|.-+ .+.++.+|.|+....
T Consensus 69 vVfG---G~~kL~~aI~~~~~~~~~p~~I~V~ttC~~ei---IGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs 142 (457)
T TIGR02932 69 AVFG---GAKRIEEGVLTLARRYPNLRVIPIITTCSTET---IGDDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGS 142 (457)
T ss_pred eEEC---cHHHHHHHHHHHHHhCCCCCEEEEECCchHHh---hcCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCc
Confidence 4566 57788888888877653 45677777775432 2344554444432222111 468899999977654
Q ss_pred c---HHHHHHHHHHHH-H-----cCCccEEEccC--CCHHHHHHHHHc-CCCe
Q 022904 82 G---YLDALNHLTDLK-E-----EGKIKTVALTN--FDTERLRIILEN-GIPV 122 (290)
Q Consensus 82 ~---~~~~~~~l~~L~-~-----~G~ir~iGvs~--~~~~~l~~~~~~-~~~~ 122 (290)
. .+.+++++-+.. + +++|--||-.+ .+.+.+..+++. ++.+
T Consensus 143 ~~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~v 195 (457)
T TIGR02932 143 QVTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDA 195 (457)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCE
Confidence 2 234444444322 2 35677776432 234456666664 4443
No 93
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=52.34 E-value=87 Score=24.44 Aligned_cols=63 Identities=14% Similarity=0.089 Sum_probs=46.9
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCC----CcccEEEEecCCCCCccHHHHHHHHHHHHH
Q 022904 30 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDV----PCLDMLQFHWWDYSNPGYLDALNHLTDLKE 95 (290)
Q Consensus 30 ~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~----d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~ 95 (290)
.|=.+.|+-|++. ...+..+++.+.++++.+.. ...|++++..+......+.++.+.|+.+.+
T Consensus 47 ~RvG~~VSKKvG~---AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGN---AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCc---chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 3455677777764 33578888888888887643 568999999998776667788888887765
No 94
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=52.25 E-value=1.7e+02 Score=26.01 Aligned_cols=106 Identities=14% Similarity=0.300 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEEecCCC--------CCccHHHHHHHHHHHHHc-CCccEEEccCCC--------
Q 022904 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY--------SNPGYLDALNHLTDLKEE-GKIKTVALTNFD-------- 108 (290)
Q Consensus 46 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~--------~~~~~~~~~~~l~~L~~~-G~ir~iGvs~~~-------- 108 (290)
+.+...++..+.+. ..+|++ ++|.|-.-.+ ....++...+.++.+++. |.--+||+..+.
T Consensus 70 ~~~~~~l~~~L~~~-~~~Gi~--niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~ 146 (281)
T TIGR00677 70 NMPIEMIDDALERA-YSNGIQ--NILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAES 146 (281)
T ss_pred CCCHHHHHHHHHHH-HHCCCC--EEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCC
Confidence 33556666666655 678866 5555554221 111234466666666664 443589988663
Q ss_pred HH-HHHHHHHc---CCCeeeeeccccccccChhhhHHHHHHHhCCeEEecccccccc
Q 022904 109 TE-RLRIILEN---GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 109 ~~-~l~~~~~~---~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
.+ ++..+.+. |..+.+.|.-|+. ... ..+++.|++.||.+ |+--|.
T Consensus 147 ~~~d~~~L~~Ki~aGA~f~iTQ~~Fd~--~~~-~~f~~~~~~~gi~~----PIi~GI 196 (281)
T TIGR00677 147 VELDLKYLKEKVDAGADFIITQLFYDV--DNF-LKFVNDCRAIGIDC----PIVPGI 196 (281)
T ss_pred HHHHHHHHHHHHHcCCCEeeccceecH--HHH-HHHHHHHHHcCCCC----CEEeec
Confidence 21 24455443 7778889999887 222 47889999997654 454454
No 95
>PRK08392 hypothetical protein; Provisional
Probab=52.13 E-value=1.4e+02 Score=25.09 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=48.1
Q ss_pred CCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCC--------CHHHHHHHHHc----CCCeeeeecccccc
Q 022904 65 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF--------DTERLRIILEN----GIPVVSNQVQHSVV 132 (290)
Q Consensus 65 ~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~--------~~~~l~~~~~~----~~~~~~~q~~~n~~ 132 (290)
.||+ +.-+|.+.. .+....-.+.+.++.+.|.+.-+|--.. ..+.+.++++. +..+.+|- .
T Consensus 86 ~D~v-I~SvH~~~~-~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt-~---- 158 (215)
T PRK08392 86 LDYV-IASVHEWFG-RPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS-R---- 158 (215)
T ss_pred CCEE-EEEeecCcC-CcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC-C----
Confidence 4555 667885422 2224566777888888898888775321 11233333332 55566553 1
Q ss_pred ccChhhhHHHHHHHhCCeEEe
Q 022904 133 DMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 133 ~~~~~~~~~~~~~~~gi~via 153 (290)
.+.+...+++.|++.|+.++.
T Consensus 159 ~~~p~~~~l~~~~~~G~~~~i 179 (215)
T PRK08392 159 YRVPDLEFIRECIKRGIKLTF 179 (215)
T ss_pred CCCCCHHHHHHHHHcCCEEEE
Confidence 234556789999999976543
No 96
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=51.72 E-value=1.2e+02 Score=28.69 Aligned_cols=108 Identities=10% Similarity=0.109 Sum_probs=60.3
Q ss_pred cCCChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHH
Q 022904 9 YGMGLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALN 88 (290)
Q Consensus 9 Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~ 88 (290)
++.|. ++-|-++|+++.++.+.+-++|+|=+.+ ..-.+++..-+++.-++++ +.++.+|.|............
T Consensus 65 v~~G~-~~kL~~~I~~~~~~~~p~~I~v~~tC~~---~iIGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~~g~~~ 137 (430)
T cd01981 65 LARGS-QEKVVENITRKDKEEKPDLIVLTPTCTS---SILQEDLQNFVRAAGLSSK---SPVLPLDVNHYRVNELQAADE 137 (430)
T ss_pred eecCc-HHHHHHHHHHHHHhcCCCEEEEeCCccH---HHHhhCHHHHHHHhhhccC---CCeEEecCCCccchHHHHHHH
Confidence 34443 4455566777766555566777776644 2233555555555444543 579999998766542233333
Q ss_pred HHHHHHH-----------------cCCccEEEccCC------CHHHHHHHHHc-CCCee
Q 022904 89 HLTDLKE-----------------EGKIKTVALTNF------DTERLRIILEN-GIPVV 123 (290)
Q Consensus 89 ~l~~L~~-----------------~G~ir~iGvs~~------~~~~l~~~~~~-~~~~~ 123 (290)
+++.+.+ +..|--||.++. +.+.+..+++. ++.+.
T Consensus 138 al~~l~~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~ 196 (430)
T cd01981 138 TFEQLVRFYAEKARPQGTPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVN 196 (430)
T ss_pred HHHHHHHHHhccccccccccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEE
Confidence 3333322 245777887753 33556666664 55443
No 97
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=51.66 E-value=96 Score=23.76 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=44.5
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhC--CCcccEEEEecCCCCCccHHHHHHHHHHHHHc
Q 022904 30 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 96 (290)
Q Consensus 30 ~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~ 96 (290)
.|=.+.|+-|++.. ...+..+++.+.++++... ..-.|++++..+.....+..++.+.|..|.+.
T Consensus 44 ~R~G~~VsKK~~~~--AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 44 PRLGLVVGKKTAKR--AVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred ceEEEEEecccCcc--hhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 34446666665432 3356788888888876543 23579999999976666577887787777654
No 98
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=51.53 E-value=1.7e+02 Score=25.64 Aligned_cols=103 Identities=16% Similarity=0.022 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc--CCCee
Q 022904 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVV 123 (290)
Q Consensus 46 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~ 123 (290)
..+.+.+.+.+++.++ -|.|+||+=. .|....+ .++....+..+++.-. .-|.|.++.++.++++++. +.+ .
T Consensus 22 ~~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~-~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~-i 95 (252)
T cd00740 22 AEDYDEALDVARQQVE-GGAQILDLNV--DYGGLDG-VSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKC-V 95 (252)
T ss_pred cCCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCH-HHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCc-E
Confidence 3467888888888875 5999999854 2332222 3344444333443322 2488889999999999985 432 2
Q ss_pred eeecccccccc-ChhhhHHHHHHHhCCeEEeccc
Q 022904 124 SNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 124 ~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~sp 156 (290)
++ ..+.... .....+++.+++.|..++.+..
T Consensus 96 IN--sIs~~~~~e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 96 VN--SINLEDGEERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred EE--eCCCCCCccccHHHHHHHHHhCCCEEEecc
Confidence 22 2223221 1134688999999999998753
No 99
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=51.00 E-value=1.7e+02 Score=25.67 Aligned_cols=100 Identities=14% Similarity=0.115 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCC-ccEEEccCCCHHHHHHHHHcCCCeeee
Q 022904 47 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVSN 125 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~~ 125 (290)
++.+...+ +-+.|.++|++.|.+-. |... .+..+..+.+.+.++ .+.+++.....+.++.+.+.+.+...+
T Consensus 19 ~s~~~k~~-i~~~L~~~Gv~~IEvG~---P~~~----~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i 90 (262)
T cd07948 19 FDTEDKIE-IAKALDAFGVDYIELTS---PAAS----PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVDL 90 (262)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEEEC---CCCC----HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEEE
Confidence 45555554 44559999988887763 4332 344555666655443 444566677888899998875553333
Q ss_pred ecccccc------ccCh------hhhHHHHHHHhCCeEEec
Q 022904 126 QVQHSVV------DMRP------QQKMAELCQLTGVKLITY 154 (290)
Q Consensus 126 q~~~n~~------~~~~------~~~~~~~~~~~gi~via~ 154 (290)
-+..|.. .+.. -.+.+++++++|+.+...
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 3322211 1111 235678889999876654
No 100
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=50.92 E-value=1.1e+02 Score=26.93 Aligned_cols=104 Identities=11% Similarity=0.062 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCcc-----HHHHHHHHHHHHHcCCccEEEccCCC---HHHHHHHHH
Q 022904 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG-----YLDALNHLTDLKEEGKIKTVALTNFD---TERLRIILE 117 (290)
Q Consensus 46 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~-----~~~~~~~l~~L~~~G~ir~iGvs~~~---~~~l~~~~~ 117 (290)
.++.+.. ..+-+.|.++|+|+|.+=+.......... -.+.+..+..+.+ +..+..+++... .+.+..+..
T Consensus 16 ~f~~~~~-~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 16 DFGDEFV-KAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred cCCHHHH-HHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhc
Confidence 4455554 45556699999999998876543211000 0355555555443 246666655433 455666554
Q ss_pred cCCCeeeeeccccccccChhhhHHHHHHHhCCeEEe
Q 022904 118 NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 118 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
.+ ++.+.+.+..-+...-.+.+++++++|+.|..
T Consensus 94 ~g--v~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 127 (266)
T cd07944 94 SV--VDMIRVAFHKHEFDEALPLIKAIKEKGYEVFF 127 (266)
T ss_pred CC--cCEEEEecccccHHHHHHHHHHHHHCCCeEEE
Confidence 34 34444444332233345789999999987664
No 101
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=50.61 E-value=92 Score=26.55 Aligned_cols=98 Identities=12% Similarity=0.148 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHH----cCCCe
Q 022904 47 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGIPV 122 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~----~~~~~ 122 (290)
++.+... .+-+.|.++|+++|.+- .|..... -.+.++.+.+.... .+..+++......++..++ .+.+.
T Consensus 11 ~~~~~k~-~i~~~L~~~Gv~~iEvg---~~~~~~~-~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 11 FSTEEKL-EIAKALDEAGVDYIEVG---FPFASED-DFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp --HHHHH-HHHHHHHHHTTSEEEEE---HCTSSHH-HHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred cCHHHHH-HHHHHHHHhCCCEEEEc---ccccCHH-HHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCE
Confidence 3444444 45556999999988887 3322222 23444555555555 4455666667777777555 24444
Q ss_pred eeeecccccccc------------ChhhhHHHHHHHhCCeE
Q 022904 123 VSNQVQHSVVDM------------RPQQKMAELCQLTGVKL 151 (290)
Q Consensus 123 ~~~q~~~n~~~~------------~~~~~~~~~~~~~gi~v 151 (290)
..+-+..|..+. ..-.+.++++++.|..+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 434444443111 11246799999999998
No 102
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=50.59 E-value=92 Score=24.00 Aligned_cols=64 Identities=2% Similarity=-0.175 Sum_probs=47.9
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCC---cccEEEEecCCCCCccHHHHHHHHHHHHHc
Q 022904 30 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVP---CLDMLQFHWWDYSNPGYLDALNHLTDLKEE 96 (290)
Q Consensus 30 ~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d---~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~ 96 (290)
+|=.+.|+-|+|.. ..+..+++-+.++.+.+..+ -.|++++-.+.....++.++.+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~A---V~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGNA---VIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccch---hHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 56668888888763 34678888888888777543 479999999877665577888888877664
No 103
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=49.70 E-value=1.8e+02 Score=25.37 Aligned_cols=98 Identities=8% Similarity=0.024 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHc-CCccEEEccCCCHHHHHHHHHcCCCeeee
Q 022904 47 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE-GKIKTVALTNFDTERLRIILENGIPVVSN 125 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~-G~ir~iGvs~~~~~~l~~~~~~~~~~~~~ 125 (290)
++.+.. ..+-+.|.++|+++|.+-+ |.. . +.-++.++.+.+. ..++..+.+....+.++.+.+.+++...+
T Consensus 17 ~~~~~k-~~i~~~L~~~Gv~~iE~g~---p~~--~--~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i 88 (259)
T cd07939 17 FSREEK-LAIARALDEAGVDEIEVGI---PAM--G--EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHI 88 (259)
T ss_pred CCHHHH-HHHHHHHHHcCCCEEEEec---CCC--C--HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEE
Confidence 344544 4555569999999998852 321 1 2334566677663 34777777777788888888765443322
Q ss_pred eccccccc------cCh------hhhHHHHHHHhCCeEE
Q 022904 126 QVQHSVVD------MRP------QQKMAELCQLTGVKLI 152 (290)
Q Consensus 126 q~~~n~~~------~~~------~~~~~~~~~~~gi~vi 152 (290)
-+..|..+ +.. -...+++|+++|+.+.
T Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 89 SIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 22222211 111 2357889999998765
No 104
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=49.63 E-value=2.5e+02 Score=27.14 Aligned_cols=71 Identities=13% Similarity=0.167 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEccC----CCHHHHHHHHHc----C-CCeee-eeccccccccChhhhHHHHHHHhCCeEE
Q 022904 83 YLDALNHLTDLKEEGKIKTVALTN----FDTERLRIILEN----G-IPVVS-NQVQHSVVDMRPQQKMAELCQLTGVKLI 152 (290)
Q Consensus 83 ~~~~~~~l~~L~~~G~ir~iGvs~----~~~~~l~~~~~~----~-~~~~~-~q~~~n~~~~~~~~~~~~~~~~~gi~vi 152 (290)
.+.+.+.++.|+++..++.+-+.. .+...+.++.+. + .++.+ .+...+.+.+ +.++++.+++.|+..+
T Consensus 224 ~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~--d~ell~~l~~aG~~~v 301 (497)
T TIGR02026 224 PKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVR--DADILHLYRRAGLVHI 301 (497)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccC--CHHHHHHHHHhCCcEE
Confidence 478899999998766677776552 234444444432 2 22221 2333333222 3578999999998776
Q ss_pred ecc
Q 022904 153 TYG 155 (290)
Q Consensus 153 a~s 155 (290)
..+
T Consensus 302 ~iG 304 (497)
T TIGR02026 302 SLG 304 (497)
T ss_pred EEc
Confidence 654
No 105
>PRK02866 cyanate hydratase; Validated
Probab=49.41 E-value=41 Score=26.93 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCcceeeecCCCCCHhHHHHhHhhhcCCCCHHHHHHHHHH
Q 022904 206 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEV 270 (290)
Q Consensus 206 ~~l~~la~~~g~s~~~~al~~~l~~~~v~~~i~g~~~~~~~~l~enl~a~~~~Lt~e~~~~l~~~ 270 (290)
+.+.+.-.+.|+|..++|=+==++.-.+.+++.|.++.++++.+...+.+ .|+++..+.|...
T Consensus 8 e~Ll~AK~~kGLTw~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kla~~L--gL~~~~~~~l~~~ 70 (147)
T PRK02866 8 EKILAAKKEKGLTWADIAEAIGLSEVWVTAALLGQMTLPAEEAEKVAELL--GLDEDAVALLQEV 70 (147)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHHHHHh--CCCHHHHHHHhcC
Confidence 34444445556666665544444444445556666655788887777766 5899888777664
No 106
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=49.37 E-value=1e+02 Score=23.30 Aligned_cols=64 Identities=11% Similarity=0.026 Sum_probs=47.3
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCC---CcccEEEEecCCCCCccHHHHHHHHHHHHHc
Q 022904 30 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 96 (290)
Q Consensus 30 ~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~---d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~ 96 (290)
.|=.+.|+-|++. ...+..+++.+.+.++.... ...|++++-.+.....++.++...|..|.+.
T Consensus 38 ~R~GisVsKKvgk---AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGN---AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCc---hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 4556777777765 33577888888888876532 3579999999877766678888888888765
No 107
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=49.36 E-value=2e+02 Score=26.01 Aligned_cols=93 Identities=9% Similarity=0.044 Sum_probs=54.8
Q ss_pred ccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccC---------CCHHHHHHHHHcCCCeeeeeccccccc--cCh
Q 022904 68 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------FDTERLRIILENGIPVVSNQVQHSVVD--MRP 136 (290)
Q Consensus 68 iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~---------~~~~~l~~~~~~~~~~~~~q~~~n~~~--~~~ 136 (290)
|.-+.|=.-|+..-.-..+.+.++.+++.|.++.+.+.+ .+.+.+..+.+.+.. .++-++.|-.. ...
T Consensus 137 I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i~l~~~h~~el~~~ 215 (321)
T TIGR03822 137 IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYVALHANHARELTAE 215 (321)
T ss_pred ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEEEecCCChhhcCHH
Confidence 333445544443321256777888888888876555533 345556666554532 23444443110 111
Q ss_pred hhhHHHHHHHhCCeEEecccccccc
Q 022904 137 QQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 137 ~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
-...++.+++.||.+...+++.+|.
T Consensus 216 ~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 216 ARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred HHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 2457888899999999999997773
No 108
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=49.04 E-value=2.1e+02 Score=26.01 Aligned_cols=86 Identities=9% Similarity=0.125 Sum_probs=58.3
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCH
Q 022904 30 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT 109 (290)
Q Consensus 30 ~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~ 109 (290)
.++.+.++.|....++ ...+.+.+++..+.+|. ++.+ ..|.. .+ .......++.+..+| +..|-++..++
T Consensus 22 ~~~~i~~v~k~~~~pf---~~~~~~Gi~~aa~~~G~---~v~~-~~~~~-~d-~~~q~~~i~~li~~~-vdgIiv~~~d~ 91 (336)
T PRK15408 22 AAERIAFIPKLVGVGF---FTSGGNGAKEAGKELGV---DVTY-DGPTE-PS-VSGQVQLINNFVNQG-YNAIIVSAVSP 91 (336)
T ss_pred CCcEEEEEECCCCCHH---HHHHHHHHHHHHHHhCC---EEEE-ECCCC-CC-HHHHHHHHHHHHHcC-CCEEEEecCCH
Confidence 6788999999865432 47888999999999984 5543 34432 22 356678889999765 88888887664
Q ss_pred H----HHHHHHHcCCCeeee
Q 022904 110 E----RLRIILENGIPVVSN 125 (290)
Q Consensus 110 ~----~l~~~~~~~~~~~~~ 125 (290)
. .+.++.+.++|+.++
T Consensus 92 ~al~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 92 DGLCPALKRAMQRGVKVLTW 111 (336)
T ss_pred HHHHHHHHHHHHCCCeEEEe
Confidence 4 445554446665543
No 109
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=48.55 E-value=1e+02 Score=23.60 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=47.4
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCC---CcccEEEEecCCCCCccHHHHHHHHHHHHHc
Q 022904 30 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 96 (290)
Q Consensus 30 ~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~---d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~ 96 (290)
.|=.+.|+-|++.. ...+..+++.+.+.++.+.. ...|++++-.+........++.+.|..|.+.
T Consensus 47 ~R~G~~VsKK~~~~--AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 47 TRFGISISQKVSKK--AVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred cEEEEEEecccccc--hhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 34446666675532 33578888888888876642 3689999999987766688999999888775
No 110
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=47.25 E-value=82 Score=28.77 Aligned_cols=68 Identities=22% Similarity=0.249 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeeeecccccccc-ChhhhHHHHHHHhCCeEEecc
Q 022904 87 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 87 ~~~l~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~s 155 (290)
++.+..|++.-.+. ..|=+.++++.+..+++. ..++++|+...-.-. ..-..+...|+++|+.++..+
T Consensus 229 ~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~-~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 229 LEGLARLRQATSVPIAAGENLYTRWEFRDLLEA-GAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HHHHHHHHHhCCCCEEeccccccHHHHHHHHHh-CCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 45566666664444 334455678888888873 347777776554321 123578999999999988775
No 111
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=47.20 E-value=89 Score=27.35 Aligned_cols=104 Identities=15% Similarity=0.130 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEEecCC-----CCCccHHHHHHHHHHHHHc-CCccEEEcc---CCCHHHHHHHHH
Q 022904 47 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWD-----YSNPGYLDALNHLTDLKEE-GKIKTVALT---NFDTERLRIILE 117 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~-----~~~~~~~~~~~~l~~L~~~-G~ir~iGvs---~~~~~~l~~~~~ 117 (290)
++.+...+ +-+.|.++|+++|.+-+..... .... ....++.++.+++. +.++...++ ......++.+.+
T Consensus 19 ~~~~~k~~-i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~-~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 19 FTLEQVRA-IARALDAAGVPLIEVGHGDGLGGSSLNYGFA-AHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred cCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCcccccCCC-CCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 44555544 5555889999999997543211 0011 11234455555443 346665554 234666777776
Q ss_pred cCCCeeeeeccccccccChhhhHHHHHHHhCCeEEec
Q 022904 118 NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 154 (290)
Q Consensus 118 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 154 (290)
.+ ++.+.+.++.-+...-.+.+++++++|..+...
T Consensus 97 ~g--~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 LG--VDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred cC--CCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 44 444454444333333456899999999876653
No 112
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=46.55 E-value=2.6e+02 Score=26.50 Aligned_cols=110 Identities=10% Similarity=0.077 Sum_probs=62.6
Q ss_pred cccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhh-CCCcccEEEEecCCCCCccH--
Q 022904 7 FTYGMGLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRM-DVPCLDMLQFHWWDYSNPGY-- 83 (290)
Q Consensus 7 ~~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~L-g~d~iDl~~lH~p~~~~~~~-- 83 (290)
.+|| .|+-|-++|++..++.+.+=++|.|=+-+.--+ +++..-+++.-++. ...-+.++.++.|+......
T Consensus 71 ~VfG---g~~~L~~~I~~~~~~~~P~~I~V~ttC~~eiIG---DDi~~v~~~~~~e~p~~~~~pvi~v~tpgf~g~~~~G 144 (432)
T TIGR01285 71 TILG---GDEHIEEAIDTLCQRNKPKAIGLLSTGLTETRG---EDIARVVRQFREKHPQHKGTAVVTVNTPDFKGSLEDG 144 (432)
T ss_pred eEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCCcccccc---cCHHHHHHHHHhhcccccCCeEEEecCCCcCCchHHH
Confidence 3566 467888888888777667778888887653323 44444444433321 01136788899887764422
Q ss_pred -HHHHHHHH-HHHH--------cCCccEEEccCCC---HHHHHHHHHc-CCCe
Q 022904 84 -LDALNHLT-DLKE--------EGKIKTVALTNFD---TERLRIILEN-GIPV 122 (290)
Q Consensus 84 -~~~~~~l~-~L~~--------~G~ir~iGvs~~~---~~~l~~~~~~-~~~~ 122 (290)
..++++|- .+.. .++|--||-++.. .+.+.++++. ++++
T Consensus 145 ~~~a~~al~~~~~~~~~~~~~~~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~ 197 (432)
T TIGR01285 145 YAAAVESIIEAWVPPAPARAQRNRRVNLLVGSLLTPGDIEELRRMVEAFGLKP 197 (432)
T ss_pred HHHHHHHHHHHHcccccccCCCCCeEEEEcCCCCCccCHHHHHHHHHHcCCce
Confidence 33443432 2222 4457777866543 4556665554 5444
No 113
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=46.33 E-value=1.4e+02 Score=25.83 Aligned_cols=20 Identities=0% Similarity=0.003 Sum_probs=16.1
Q ss_pred hhHHHHHHHhCCeEEecccc
Q 022904 138 QKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 138 ~~~~~~~~~~gi~via~spl 157 (290)
+..+++|+..|...+...|.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~ 112 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAA 112 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCC
Confidence 45789999999999877654
No 114
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=45.68 E-value=1e+02 Score=28.36 Aligned_cols=84 Identities=12% Similarity=0.056 Sum_probs=58.4
Q ss_pred ccEEEEecCCCCCccHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeeeecccccccc-ChhhhHHHHHH
Q 022904 68 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 145 (290)
Q Consensus 68 iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~ 145 (290)
+++.++-.|-.. +-++.+.+|++...+. ..|=|-++...+..+++. ..++++|+...-.-. ..-.++.+.|+
T Consensus 189 ~~l~~iEeP~~~-----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~-~a~di~~~d~~~~GGit~~~~ia~~A~ 262 (361)
T cd03322 189 YRLFWMEDPTPA-----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQE-RLIDYIRTTVSHAGGITPARKIADLAS 262 (361)
T ss_pred cCCCEEECCCCc-----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHh-CCCCEEecCccccCCHHHHHHHHHHHH
Confidence 466677766432 3356677788877665 667777889999999874 347888887654321 12357899999
Q ss_pred HhCCeEEecccc
Q 022904 146 LTGVKLITYGTV 157 (290)
Q Consensus 146 ~~gi~via~spl 157 (290)
.+|+.++.++..
T Consensus 263 ~~gi~~~~h~~~ 274 (361)
T cd03322 263 LYGVRTGWHGPT 274 (361)
T ss_pred HcCCeeeccCCC
Confidence 999999976543
No 115
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=45.53 E-value=26 Score=25.12 Aligned_cols=69 Identities=12% Similarity=0.051 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHc-CCccEEEccCCCHHHHHHHHHc-CCCeeeee
Q 022904 50 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE-GKIKTVALTNFDTERLRIILEN-GIPVVSNQ 126 (290)
Q Consensus 50 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~-G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q 126 (290)
+.+=...+.....||....||..+..-.+... .+.+...|..+++. |+ ..+...+..++.. ++++++.|
T Consensus 10 ~~LG~~W~~Lar~Lgls~~~I~~i~~~~p~~l-~eQv~~mL~~W~~r~G~-------~ATv~~L~~aL~~~~~~~~~~~ 80 (83)
T cd08319 10 QRLGPEWEQVLLDLGLSQTDIYRCKENHPHNV-QSQIVEALVKWRQRFGK-------KATVQSLIQSLKAVEVDPSVLQ 80 (83)
T ss_pred HHHhhhHHHHHHHcCCCHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhcCC-------CCcHHHHHHHHHHcCCCHHHHH
Confidence 45556777888899999999999887555444 57888999999885 43 5567777777775 55555443
No 116
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=45.27 E-value=1.8e+02 Score=26.08 Aligned_cols=100 Identities=8% Similarity=0.045 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEe-cCCCCCcc----HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCe
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFH-WWDYSNPG----YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPV 122 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH-~p~~~~~~----~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~ 122 (290)
+.+.+.+.+++.+ .-|.|-||+=--- +|...... ++.+...++.+++.-.+ -|.|.++.++.++++++.|.++
T Consensus 36 ~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~Gadi 113 (282)
T PRK11613 36 SLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAGAHI 113 (282)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcCCCE
Confidence 5677777766665 5588888875322 24332211 23466677888765333 4899999999999999876544
Q ss_pred eeeeccccccccChhhhHHHHHHHhCCeEEecc
Q 022904 123 VSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 123 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 155 (290)
. |=+ +-+ . +.++++.+++.|++++.+.
T Consensus 114 I-NDI--~g~-~--d~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 114 I-NDI--RSL-S--EPGALEAAAETGLPVCLMH 140 (282)
T ss_pred E-EEC--CCC-C--CHHHHHHHHHcCCCEEEEc
Confidence 2 111 122 1 3467888999999999874
No 117
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=45.17 E-value=87 Score=26.39 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=55.2
Q ss_pred CcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeeeecccc-ccccChhhhHHHHH
Q 022904 66 PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHS-VVDMRPQQKMAELC 144 (290)
Q Consensus 66 d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n-~~~~~~~~~~~~~~ 144 (290)
.-..+..+.+.. .-...++|.+.|-. .+-++-.+.+.+..+++ +....+.-+..+ .-.......+++.|
T Consensus 21 ~~~~V~~l~R~~--------~~~~~~~l~~~g~~-vv~~d~~~~~~l~~al~-g~d~v~~~~~~~~~~~~~~~~~li~Aa 90 (233)
T PF05368_consen 21 AGFSVRALVRDP--------SSDRAQQLQALGAE-VVEADYDDPESLVAALK-GVDAVFSVTPPSHPSELEQQKNLIDAA 90 (233)
T ss_dssp TTGCEEEEESSS--------HHHHHHHHHHTTTE-EEES-TT-HHHHHHHHT-TCSEEEEESSCSCCCHHHHHHHHHHHH
T ss_pred CCCCcEEEEecc--------chhhhhhhhcccce-EeecccCCHHHHHHHHc-CCceEEeecCcchhhhhhhhhhHHHhh
Confidence 346777777743 11235566777764 56666668889998888 666665555543 22222356799999
Q ss_pred HHhCCeEEeccccccc
Q 022904 145 QLTGVKLITYGTVMGG 160 (290)
Q Consensus 145 ~~~gi~via~spl~~G 160 (290)
++.||..+.+|-++..
T Consensus 91 ~~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 91 KAAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHHT-SEEEESEESSG
T ss_pred hccccceEEEEEeccc
Confidence 9999999999888664
No 118
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=45.13 E-value=1.3e+02 Score=30.12 Aligned_cols=96 Identities=8% Similarity=-0.018 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEcc-CCCHHHHHHHHHcCCCeeeee
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 126 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~q 126 (290)
+.++++.. ..+|.|++=+++......... .+.+...+.+......+..+||. |-+++.+.++.+ ...++++|
T Consensus 12 ~~eda~~a-----~~~gaD~iGfIf~~~SpR~V~-~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~-~~~ld~vQ 84 (610)
T PRK13803 12 DSALISKA-----VDMLPDFIGFIFYEKSPRFVG-NKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSK-KNGIDFVQ 84 (610)
T ss_pred cHHHHHHH-----HHcCCCEEEEEecCCCCCCCC-HHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHH-hcCCCEEE
Confidence 34555544 458999999886554333233 23313333333323357789986 778888888887 57799999
Q ss_pred ccccccccChhhhHHHHHHHhCCeEE
Q 022904 127 VQHSVVDMRPQQKMAELCQLTGVKLI 152 (290)
Q Consensus 127 ~~~n~~~~~~~~~~~~~~~~~gi~vi 152 (290)
++-+.- ....+.++..++.++.++
T Consensus 85 LHG~e~--~~~~~~~~~l~~~~~~ii 108 (610)
T PRK13803 85 LHGAES--KAEPAYCQRIYKKSIKKI 108 (610)
T ss_pred ECCCCC--cccHHHHHHhhhcCCcEE
Confidence 987541 111234555555556555
No 119
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=44.71 E-value=2.1e+02 Score=26.43 Aligned_cols=77 Identities=18% Similarity=0.165 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHcC--Cc--cEEEcc--CCCHHHHHHHHHc--CCCeeeeeccccccccC----h----hhhHHHHHHH
Q 022904 83 YLDALNHLTDLKEEG--KI--KTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDMR----P----QQKMAELCQL 146 (290)
Q Consensus 83 ~~~~~~~l~~L~~~G--~i--r~iGvs--~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~----~----~~~~~~~~~~ 146 (290)
++++++++.+....+ +| +|+=+. |-+.+.+..+.+. +.+..++-++||+.... + -..+.+..++
T Consensus 233 l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L~~ 312 (349)
T PRK14463 233 LAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHEGCDFRSPTQEAIDRFHKYLLD 312 (349)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 467777777766644 22 344333 5566777777776 56778888999986431 1 1346677889
Q ss_pred hCCeEEecccccc
Q 022904 147 TGVKLITYGTVMG 159 (290)
Q Consensus 147 ~gi~via~spl~~ 159 (290)
+||.+..+...+.
T Consensus 313 ~gi~v~vR~~~G~ 325 (349)
T PRK14463 313 KHVTVITRSSRGS 325 (349)
T ss_pred CCceEEEeCCCCc
Confidence 9999999877754
No 120
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=44.69 E-value=2.5e+02 Score=25.65 Aligned_cols=93 Identities=11% Similarity=0.095 Sum_probs=54.9
Q ss_pred HhhhCCCcccEEEEe-cCCCCCccHHHHHHHHHHHHHcCCc-cEEEccC---CCHHHHHHHHHc--CCCeeeeecccccc
Q 022904 60 RRRMDVPCLDMLQFH-WWDYSNPGYLDALNHLTDLKEEGKI-KTVALTN---FDTERLRIILEN--GIPVVSNQVQHSVV 132 (290)
Q Consensus 60 L~~Lg~d~iDl~~lH-~p~~~~~~~~~~~~~l~~L~~~G~i-r~iGvs~---~~~~~l~~~~~~--~~~~~~~q~~~n~~ 132 (290)
-+.+|.|+|||=+.- .|+......++....++.+.+.=.+ -.|..|. -+++.+++.++. +-++-++-...
T Consensus 85 ~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~--- 161 (319)
T PRK04452 85 VEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEE--- 161 (319)
T ss_pred HHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCH---
Confidence 357788777765432 2332222234555556655443232 2366553 278999999886 33343333322
Q ss_pred ccChhhhHHHHHHHhCCeEEecccc
Q 022904 133 DMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 133 ~~~~~~~~~~~~~~~gi~via~spl 157 (290)
-+. ..+.+.|+++|..|++.+|.
T Consensus 162 -en~-~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 162 -DNY-KKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred -HHH-HHHHHHHHHhCCeEEEEcHH
Confidence 122 47999999999999998765
No 121
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=44.66 E-value=31 Score=23.23 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHh
Q 022904 206 QTLKRIASKHGVSIPVVAVRYILD 229 (290)
Q Consensus 206 ~~l~~la~~~g~s~~~~al~~~l~ 229 (290)
..+.+||+++|+++.++|..|+.-
T Consensus 14 ~~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 14 LSFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred CcHHHHHHHhCCCHHHHHHHHHHH
Confidence 457889999999999999999753
No 122
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=43.98 E-value=1.4e+02 Score=22.77 Aligned_cols=62 Identities=8% Similarity=-0.004 Sum_probs=46.4
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCC----C--cccEEEEecCCCCCccHHHHHHHHHHHH
Q 022904 31 QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDV----P--CLDMLQFHWWDYSNPGYLDALNHLTDLK 94 (290)
Q Consensus 31 R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~----d--~iDl~~lH~p~~~~~~~~~~~~~l~~L~ 94 (290)
|=.+.|+-|++.. ...+..+++.+.++.+.+.. . -.|++++-.+.....++.++.+.|+.|.
T Consensus 47 RlG~sVSKKv~~k--AV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~ 114 (118)
T PRK01492 47 FLGIKVSRKLNKK--AVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKII 114 (118)
T ss_pred eEEEEEecccCCc--hhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHH
Confidence 5668888886643 33578899999999888754 2 5799999998876666777777777664
No 123
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=43.62 E-value=53 Score=28.08 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=36.8
Q ss_pred HcCCChHHHHHHHHHhCCCcceeeecCCCCCHhHHHHhHhhh
Q 022904 214 KHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 255 (290)
Q Consensus 214 ~~g~s~~~~al~~~l~~~~v~~~i~g~~~~~~~~l~enl~a~ 255 (290)
+.+.|-.++|+.|++.++....++.|+..+..+|+-.|+.-+
T Consensus 74 eKd~TD~elAl~~a~e~g~d~i~i~Ga~GGR~DH~l~nl~ll 115 (212)
T COG1564 74 EKDSTDLELALDEALERGADEIVILGALGGRLDHALANLFLL 115 (212)
T ss_pred hhccchHHHHHHHHHHcCCCEEEEEecCCChHHHHHHHHHHH
Confidence 557789999999999999888889999988999999998654
No 124
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=43.46 E-value=94 Score=29.64 Aligned_cols=91 Identities=12% Similarity=0.047 Sum_probs=55.5
Q ss_pred ChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHH
Q 022904 12 GLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLT 91 (290)
Q Consensus 12 G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~ 91 (290)
|.+=.+|-. ++..+..-.++++=--- .+. .-+.+....++.++|+.||+++ |= +......++--.+.++
T Consensus 15 G~artAL~n---~l~Ar~~gG~fiLRiED-TD~-~R~~~e~~~~I~~~L~WlGl~w-De-----~y~QSeR~~~Y~~~a~ 83 (433)
T PRK12410 15 GNLRAAIFN---YIVAKQQNEDFLIRIED-TDK-ERNIEGKDKEILEILNLFGISW-DK-----LVYQSENLKFHRQMAE 83 (433)
T ss_pred HHHHHHHHH---HHHHHHcCCEEEEEeCc-CCC-CcCChHHHHHHHHHHHHcCCCC-CC-----CeehhccHHHHHHHHH
Confidence 666666665 33333333334332111 111 2245677789999999999987 62 2233343566777899
Q ss_pred HHHHcCCccEEEccCCCHHHHHHHH
Q 022904 92 DLKEEGKIKTVALTNFDTERLRIIL 116 (290)
Q Consensus 92 ~L~~~G~ir~iGvs~~~~~~l~~~~ 116 (290)
+|.++|++ |..+| +.+.+++..
T Consensus 84 ~Li~~G~A-Y~C~c--s~eel~~~r 105 (433)
T PRK12410 84 KLLSEKKA-FACFC--SEEELEAKK 105 (433)
T ss_pred HHHHcCCe-eeecC--CHHHHHHHH
Confidence 99999997 66766 556665543
No 125
>PRK07945 hypothetical protein; Provisional
Probab=43.11 E-value=2.6e+02 Score=25.51 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=45.2
Q ss_pred EEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccC---------------CC-HHHHHHHHHcCCCeeeeeccccccc
Q 022904 70 MLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------------FD-TERLRIILENGIPVVSNQVQHSVVD 133 (290)
Q Consensus 70 l~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~---------------~~-~~~l~~~~~~~~~~~~~q~~~n~~~ 133 (290)
+.-+|+... .+ .....+.+.+..+.+++..+|--. +. .+.+..+.+.+..+.+|--.+ .
T Consensus 195 IgSvH~~~~-~~-~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~~lEINt~~~---r 269 (335)
T PRK07945 195 VASVHSKLR-MD-AAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGTAVEINSRPE---R 269 (335)
T ss_pred EEEeecCCC-CC-HHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCCEEEEeCCCC---C
Confidence 456676532 22 355667777777788888888432 11 122333333355566553322 2
Q ss_pred cChhhhHHHHHHHhCCeEE
Q 022904 134 MRPQQKMAELCQLTGVKLI 152 (290)
Q Consensus 134 ~~~~~~~~~~~~~~gi~vi 152 (290)
..+...+++.|++.|+.++
T Consensus 270 ~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 270 RDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred CCChHHHHHHHHHcCCeEE
Confidence 3455678899999988754
No 126
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=43.07 E-value=2.2e+02 Score=26.27 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=60.2
Q ss_pred EEEEecCCCC-----------CccHHHHHHHHHHHHHcCCccEEEcc-------CCCHHHHHHHHHc--CCCeeeeeccc
Q 022904 70 MLQFHWWDYS-----------NPGYLDALNHLTDLKEEGKIKTVALT-------NFDTERLRIILEN--GIPVVSNQVQH 129 (290)
Q Consensus 70 l~~lH~p~~~-----------~~~~~~~~~~l~~L~~~G~ir~iGvs-------~~~~~~l~~~~~~--~~~~~~~q~~~ 129 (290)
-+.||.|+.. .+ .++.+.+.+...+... +.|-+- |-+.++...+.+. +++..++-++|
T Consensus 215 AiSLHa~nd~lR~~L~Pink~~~-~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~ 292 (349)
T COG0820 215 AISLHAPNDELRDQLMPINKKYP-IEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPY 292 (349)
T ss_pred EEecCCCCHHHHhhhhccccCCC-HHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeec
Confidence 3668988432 22 5677888887776555 433322 5557777777776 67779999999
Q ss_pred cccccCh--------hhhHHHHHHHhCCeEEecccccc
Q 022904 130 SVVDMRP--------QQKMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 130 n~~~~~~--------~~~~~~~~~~~gi~via~spl~~ 159 (290)
|+..... -....+...++||.+....+-+.
T Consensus 293 Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~ 330 (349)
T COG0820 293 NPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGD 330 (349)
T ss_pred CCCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccc
Confidence 9976543 23567777788899998776654
No 127
>PRK15108 biotin synthase; Provisional
Probab=42.48 E-value=2.7e+02 Score=25.51 Aligned_cols=110 Identities=14% Similarity=0.097 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccC--CCHHHHHHHHHcCCCee-
Q 022904 47 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN--FDTERLRIILENGIPVV- 123 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~--~~~~~l~~~~~~~~~~~- 123 (290)
.+++.|.+.+.+ ...+|+..| .+...+.++....++.+.+.+..+++.|. .+.+|+ .+.+.+.++.+.|....
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRF-CMGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEE-EEEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 578888888875 557899887 33333222222225677778888887764 343444 67899999988754311
Q ss_pred ----eeeccccccc--cCh--hhhHHHHHHHhCCeEEeccccccc
Q 022904 124 ----SNQVQHSVVD--MRP--QQKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 124 ----~~q~~~n~~~--~~~--~~~~~~~~~~~gi~via~spl~~G 160 (290)
...-.|.-+. ... --+.++.+++.|+.+.+--.++-|
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 1111111110 111 235678888888877655555433
No 128
>PRK06740 histidinol-phosphatase; Validated
Probab=42.04 E-value=2.1e+02 Score=26.12 Aligned_cols=99 Identities=12% Similarity=0.096 Sum_probs=58.6
Q ss_pred HHHHHHHhhhCCCcccEEEEecCCCC---Ccc-------------HHHHHHHHHHHHHcCCccEEEccC------CCH--
Q 022904 54 ESIDVSRRRMDVPCLDMLQFHWWDYS---NPG-------------YLDALNHLTDLKEEGKIKTVALTN------FDT-- 109 (290)
Q Consensus 54 ~~~~~SL~~Lg~d~iDl~~lH~p~~~---~~~-------------~~~~~~~l~~L~~~G~ir~iGvs~------~~~-- 109 (290)
..+++.|+....||+ +.-+|..+.. .+. ...-.+.+.++.+.|++..||--. +.+
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 345566666777887 8888975411 111 122446778888899999888442 111
Q ss_pred ----HHHHHHHHc----CCCeeeeec-cc--cccccChhhhHHHHHHHhCCeEEe
Q 022904 110 ----ERLRIILEN----GIPVVSNQV-QH--SVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 110 ----~~l~~~~~~----~~~~~~~q~-~~--n~~~~~~~~~~~~~~~~~gi~via 153 (290)
..++++++. +..+.+|-- .+ ...+..+...+++.|++.|+.++.
T Consensus 235 ~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~tl 289 (331)
T PRK06740 235 NEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPITL 289 (331)
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEEE
Confidence 233333333 666666653 12 222233456799999999998654
No 129
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.73 E-value=3e+02 Score=25.73 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=59.6
Q ss_pred EEEEecCCCC----------CccHHHHHHHHHHHHH-cCC---ccEEEcc--CCCHHHHHHHHHc--CC---Ceeeeecc
Q 022904 70 MLQFHWWDYS----------NPGYLDALNHLTDLKE-EGK---IKTVALT--NFDTERLRIILEN--GI---PVVSNQVQ 128 (290)
Q Consensus 70 l~~lH~p~~~----------~~~~~~~~~~l~~L~~-~G~---ir~iGvs--~~~~~~l~~~~~~--~~---~~~~~q~~ 128 (290)
.+-||.++.. ...++++++++.+..+ .|. |+|+=+. |-+.+.+.++.+. +. +..++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 3678887532 1226889999888774 354 3344333 4566666666655 45 67899999
Q ss_pred ccccccC----h----hhhHHHHHHHhCCeEEecccccc
Q 022904 129 HSVVDMR----P----QQKMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 129 ~n~~~~~----~----~~~~~~~~~~~gi~via~spl~~ 159 (290)
||++... + -..+.+..+++||.+..+...+.
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 9996532 1 23577888899999999877654
No 130
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=41.26 E-value=1.6e+02 Score=28.36 Aligned_cols=73 Identities=10% Similarity=0.057 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEcc-CCCHHHHHHHHHcCCCeeeee
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 126 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~q 126 (290)
+.++++... .+|.|++=+.+...-..... .+....+-+... ++.+||. |-+++.+.++.+ ...++++|
T Consensus 266 ~~eda~~a~-----~~GaD~lGfIf~~~SpR~V~--~~~a~~i~~~l~---v~~VgVfv~~~~~~i~~i~~-~~~lD~vQ 334 (454)
T PRK09427 266 RPQDAKAAY-----DAGAVYGGLIFVEKSPRYVS--LEQAQEIIAAAP---LRYVGVFRNADIEDIVDIAK-QLSLAAVQ 334 (454)
T ss_pred CHHHHHHHH-----hCCCCEEeeEeCCCCCCCCC--HHHHHHHHHhCC---CCEEEEEeCCCHHHHHHHHH-HcCCCEEE
Confidence 445554443 58999888864333222222 233333333222 8889988 678888888887 57799999
Q ss_pred ccccc
Q 022904 127 VQHSV 131 (290)
Q Consensus 127 ~~~n~ 131 (290)
++-+.
T Consensus 335 LHG~e 339 (454)
T PRK09427 335 LHGDE 339 (454)
T ss_pred eCCCC
Confidence 98864
No 131
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=41.23 E-value=3.5e+02 Score=26.38 Aligned_cols=94 Identities=10% Similarity=-0.040 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeeeeccc
Q 022904 50 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQH 129 (290)
Q Consensus 50 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~ 129 (290)
+.+.+...+.+ .-|.|.||+=.--. .+..+.+...++.+++...+ -|.|.+++++.++++++.|.++. + ..
T Consensus 165 ~~i~~~A~~~~-~~GADIIDIG~~st----~p~~~~v~~~V~~l~~~~~~-pISIDT~~~~v~eaAL~aGAdiI-N--sV 235 (499)
T TIGR00284 165 DGIEGLAARME-RDGADMVALGTGSF----DDDPDVVKEKVKTALDALDS-PVIADTPTLDELYEALKAGASGV-I--MP 235 (499)
T ss_pred HHHHHHHHHHH-HCCCCEEEECCCcC----CCcHHHHHHHHHHHHhhCCC-cEEEeCCCHHHHHHHHHcCCCEE-E--EC
Confidence 55666655554 66899999863221 22234677788888876332 48999999999999998754432 2 12
Q ss_pred cccccChhhhHHHHHHHhCCeEEecc
Q 022904 130 SVVDMRPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 130 n~~~~~~~~~~~~~~~~~gi~via~s 155 (290)
+.. . ..++++.+++.|+.++.+-
T Consensus 236 s~~--~-~d~~~~l~a~~g~~vVlm~ 258 (499)
T TIGR00284 236 DVE--N-AVELASEKKLPEDAFVVVP 258 (499)
T ss_pred Ccc--c-hhHHHHHHHHcCCeEEEEc
Confidence 221 2 2368888999998888763
No 132
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=41.11 E-value=1.8e+02 Score=23.20 Aligned_cols=66 Identities=6% Similarity=-0.037 Sum_probs=45.8
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhC--CCcccEEEEecCCCCCccHHHHHHHHHHHHHcC
Q 022904 30 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 97 (290)
Q Consensus 30 ~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G 97 (290)
.|=.|.|+-|++.. ...+..+++.+.++++.+. +.-.|++++-.+......+.++...|..|.+.-
T Consensus 48 ~RlG~sVSKKvg~~--AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k~ 115 (145)
T PRK04820 48 PRLGLAVSRKVDTR--AVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRRA 115 (145)
T ss_pred cEEEEEEeccccCc--chhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 34446666676432 3356778888888877552 334599999988776666889999999888763
No 133
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=40.78 E-value=3.3e+02 Score=25.96 Aligned_cols=49 Identities=8% Similarity=0.182 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHc---CCCee---eeeccccccccChhhhHHHHHHHhCCeEEecccc
Q 022904 107 FDTERLRIILEN---GIPVV---SNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 107 ~~~~~l~~~~~~---~~~~~---~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 157 (290)
.+++++.++++. ..++. -+-++.|+ .....+.++.+++.|+..+..+.-
T Consensus 117 l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p--~~lt~e~l~~L~~~G~~rvsiGvQ 171 (453)
T PRK13347 117 LNPDQFERLMAALRDAFDFAPEAEIAVEIDP--RTVTAEMLQALAALGFNRASFGVQ 171 (453)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCceEEEEecc--ccCCHHHHHHHHHcCCCEEEECCC
Confidence 457777777765 22211 23344555 233568999999999888776543
No 134
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.46 E-value=3e+02 Score=25.43 Aligned_cols=89 Identities=9% Similarity=0.061 Sum_probs=59.7
Q ss_pred EEEEecCCC-----------CCccHHHHHHHHHHHHHcC--Ccc--EEEc--cCCCHHHHHHHHHc--CCCeeeeecccc
Q 022904 70 MLQFHWWDY-----------SNPGYLDALNHLTDLKEEG--KIK--TVAL--TNFDTERLRIILEN--GIPVVSNQVQHS 130 (290)
Q Consensus 70 l~~lH~p~~-----------~~~~~~~~~~~l~~L~~~G--~ir--~iGv--s~~~~~~l~~~~~~--~~~~~~~q~~~n 130 (290)
.+-||.|+. ..+ ++++++++++..++. +|. |+=+ -|-+.+++.++.+. +.+..++-++||
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~-l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~N 288 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFS-IKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFH 288 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCC-HHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecC
Confidence 578898742 233 688888888866543 221 2222 26677777777776 677889999999
Q ss_pred ccccC----h----hhhHHHHHHHhCCeEEecccccc
Q 022904 131 VVDMR----P----QQKMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 131 ~~~~~----~----~~~~~~~~~~~gi~via~spl~~ 159 (290)
+.... + -..+.+..+++||.+..+...+.
T Consensus 289 p~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 289 AIPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 74331 1 13567778899999998876654
No 135
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=40.28 E-value=1.5e+02 Score=21.94 Aligned_cols=62 Identities=16% Similarity=0.101 Sum_probs=43.1
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhC--CCcccEEEEecCCCCCccHHHHHHHHHHHH
Q 022904 30 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLK 94 (290)
Q Consensus 30 ~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~ 94 (290)
.|=.+.|+-|++. ...+..+++.+.+..+... ....|++++-.+.....++.++...|+.|.
T Consensus 41 ~RlGi~vsKK~g~---AV~RNriKR~lRe~~R~~~~~l~~~d~v~i~r~~~~~~~~~~l~~~l~~l~ 104 (105)
T TIGR00188 41 PRVGLSVSKKVKN---AVERNRIKRLIREVFRERQELLKALDVVVIVRKGFSELTYEAFLKLLLQLF 104 (105)
T ss_pred cEEEEEEecccCc---hhHHHHHHHHHHHHHHHhhcccCCccEEEEECCCcCcCCHHHHHHHHHHHh
Confidence 3445677777654 3356777777777776542 236899999998877666788888887764
No 136
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=40.09 E-value=95 Score=29.72 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=59.4
Q ss_pred ccccccCC----ChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCC
Q 022904 4 HLVFTYGM----GLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS 79 (290)
Q Consensus 4 ~~a~~Yg~----G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~ 79 (290)
-.||+--+ |.+-.+|-. ++..+....++++= +--.....+.+...+.+.++|+.||++ .|-++ ..
T Consensus 6 RFAPSPTG~lHiG~artAL~n---~l~Ar~~gG~fiLR--IEDTD~~Rs~~~~~~~I~e~L~wLGI~-~De~y-----~Q 74 (445)
T PRK12558 6 RFAPSPTGYLHVGNARTALLN---WLYARKHGGKFILR--IDDTDLERSKQEYADAIAEDLKWLGIN-WDRTF-----RQ 74 (445)
T ss_pred EeCCCCCCcccHHHHHHHHHH---HHHHHHhCCEEEEE--eccCCcccchHHHHHHHHHHHHHcCCC-CCccc-----cH
Confidence 34555422 667777765 33334333333332 111111335689999999999999997 47432 22
Q ss_pred CccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHH
Q 022904 80 NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 115 (290)
Q Consensus 80 ~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~ 115 (290)
...++...+.+++|+++|++ |...| +.+.++..
T Consensus 75 Ser~~~y~~~~e~L~e~G~A-Y~C~C--t~eel~~~ 107 (445)
T PRK12558 75 SDRFDRYDEAAEKLKAAGRL-YPCYE--TPEELELK 107 (445)
T ss_pred HHHHHHHHHHHHHHHHCCCE-EEecC--chHHHHHH
Confidence 23245667889999999996 77777 55655443
No 137
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.91 E-value=1.1e+02 Score=25.96 Aligned_cols=88 Identities=14% Similarity=0.152 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCC---ccEEEccC-CCHHHHHHHHHcCCCee
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK---IKTVALTN-FDTERLRIILENGIPVV 123 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~---ir~iGvs~-~~~~~l~~~~~~~~~~~ 123 (290)
+.+....-++ .|-+-|+..+-+ -+- . ...++.+++++++-. =-.||.-+ .+.++++.+++.+-.|.
T Consensus 23 ~~~~a~~~~~-al~~~Gi~~iEi---t~~---~---~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 23 SKEEALKISL-AVIKGGIKAIEV---TYT---N---PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEE---ECC---C---ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 3455555444 444666544433 331 2 356667777766421 13588765 58999999998876665
Q ss_pred eeeccccccccChhhhHHHHHHHhCCeEEe
Q 022904 124 SNQVQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 124 ~~q~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
+ +| ....+++++|+++||.++.
T Consensus 93 v-----sP---~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 93 V-----SP---SFNRETAKICNLYQIPYLP 114 (213)
T ss_pred E-----CC---CCCHHHHHHHHHcCCCEEC
Confidence 3 33 3356899999999999986
No 138
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=39.88 E-value=3.1e+02 Score=28.46 Aligned_cols=60 Identities=10% Similarity=-0.017 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHc--CCccEEEccCCCHH
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKIKTVALTNFDTE 110 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~--G~ir~iGvs~~~~~ 110 (290)
..+.+++-++...........-+|+|+..+.-.. ..+++|.+..++ ..+++|-++|....
T Consensus 100 gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---~A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 100 GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---HAFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred cHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---HHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 3466666665544333333557888887654333 556667666666 57889999986433
No 139
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=39.88 E-value=87 Score=26.93 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEc----cCCCHHHHHHHHHcCCCeeeeeccccccccChhhhHHHHHHHhCCeEEeccccc
Q 022904 83 YLDALNHLTDLKEEGKIKTVAL----TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVM 158 (290)
Q Consensus 83 ~~~~~~~l~~L~~~G~ir~iGv----s~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~ 158 (290)
+++..++|..|+ +..|.. |.+....++.+.+. .... .|.|+=.....+++...-+.|..++.-++-+
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~-lGl~----~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa 145 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEE-LGLK----VYAPLWGRDPEELLEEMVEAGFEAIIVAVSA 145 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHH-hCCE----EeecccCCCHHHHHHHHHHcCCeEEEEEEec
Confidence 677788888887 444432 33334445555543 2222 2233322223578888888898888877777
Q ss_pred cccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcCCChH
Q 022904 159 GGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIP 220 (290)
Q Consensus 159 ~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~ 220 (290)
.|+-..- -..++-.+.++.++.+++++|+.++
T Consensus 146 ~gL~~~~------------------------------lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 146 EGLDESW------------------------------LGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred cCCChHH------------------------------hCCccCHHHHHHHHHHHHhcCCCcc
Confidence 7753100 0111223456889999999998764
No 140
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=39.62 E-value=57 Score=25.53 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEcc
Q 022904 53 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT 105 (290)
Q Consensus 53 ~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs 105 (290)
+..+.+.|+.+....+|.++++..+.-.....+....++.|.+.-.|+.+-+.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~gv~l~~~~ 106 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKGVRFIAIN 106 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcCcEEEEec
Confidence 44555555556566788888888777666566777777777766334444443
No 141
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=39.27 E-value=1.5e+02 Score=23.08 Aligned_cols=63 Identities=10% Similarity=-0.009 Sum_probs=42.4
Q ss_pred CCcEEEEec-cCCCCCCCCHHHHHHHHHHHHhhhC--CCcccEEEEecCCCCCccHHHHHHHHHHHHHc
Q 022904 31 QSSWISLTK-WVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 96 (290)
Q Consensus 31 R~~~~i~tK-~~~~~~~~~~~~i~~~~~~SL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~ 96 (290)
|=.+.|+-| ++. ...+..+++.+.++.+... ..-.|++++..+.....+..++.+.|..|.+.
T Consensus 47 RiG~~VsKK~~g~---AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 47 RLGLVIGKKSVKL---AVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWKR 112 (130)
T ss_pred cEEEEEecccCcc---HhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 334555555 443 3356777777777776542 24689999999877666677888888777654
No 142
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=39.23 E-value=1.9e+02 Score=24.02 Aligned_cols=100 Identities=20% Similarity=0.201 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhhhCCCcccEEEEecCC-CCCccHHHHHHHHHHHHHcCCccEEEccCCC--HHHHHHHHHcCCCeeeee
Q 022904 50 SIVRESIDVSRRRMDVPCLDMLQFHWWD-YSNPGYLDALNHLTDLKEEGKIKTVALTNFD--TERLRIILENGIPVVSNQ 126 (290)
Q Consensus 50 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~-~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~--~~~l~~~~~~~~~~~~~q 126 (290)
+.+...+.+.++..+..- +-+.+-=.. ............+..|++.|- .+.+.+++ ...+..+. ..+++++-
T Consensus 99 ~~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~--~l~~d~iK 173 (241)
T smart00052 99 PDLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLK--RLPVDLLK 173 (241)
T ss_pred chHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHH--hCCCCeEE
Confidence 445566677777766542 112222111 111213455589999999996 36666664 34445554 35677666
Q ss_pred ccccccccC--------hhhhHHHHHHHhCCeEEec
Q 022904 127 VQHSVVDMR--------PQQKMAELCQLTGVKLITY 154 (290)
Q Consensus 127 ~~~n~~~~~--------~~~~~~~~~~~~gi~via~ 154 (290)
+..+.+... .-+.++..|+..|+.+++-
T Consensus 174 ld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 174 IDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred ECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 665544221 1346789999999999884
No 143
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=38.88 E-value=61 Score=29.31 Aligned_cols=87 Identities=13% Similarity=-0.086 Sum_probs=42.9
Q ss_pred ChhhhHHHHHHHhCCeEEeccccccccccccccCCCCCCCCCCCCCCCcchh-H--hhhhhhccCCchhHHHHHHHHHHH
Q 022904 135 RPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQ-K--YKRMVDAWGGWSQFQVLLQTLKRI 211 (290)
Q Consensus 135 ~~~~~~~~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~l~~l 211 (290)
.+...+++.||++||.|.||-.++...-........+|..+...+....... . -....-.+..++.-.-+.+.+.++
T Consensus 70 DpL~~~I~eaHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Ei 149 (311)
T PF02638_consen 70 DPLEFMIEEAHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEI 149 (311)
T ss_pred cHHHHHHHHHHHcCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHH
Confidence 3456799999999999999864332111100000111111111111000000 0 001122334456666677889999
Q ss_pred HHHcCCChHH
Q 022904 212 ASKHGVSIPV 221 (290)
Q Consensus 212 a~~~g~s~~~ 221 (290)
++++++.-.+
T Consensus 150 v~~YdvDGIh 159 (311)
T PF02638_consen 150 VKNYDVDGIH 159 (311)
T ss_pred HhcCCCCeEE
Confidence 9999765444
No 144
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=38.86 E-value=1.5e+02 Score=27.62 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeeeeccccccccChhhhHHHHHHHhCCeEEecc
Q 022904 86 ALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 86 ~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 155 (290)
-..++.+|.+.|.+.+|-..-...-.+..+... .-.+. --|...-...-+.+++.|+++||.+|..+
T Consensus 11 ~~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~Na 78 (362)
T PF07287_consen 11 RPDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITNA 78 (362)
T ss_pred cHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEeC
Confidence 345667777888888887664443333333321 00111 11222111223578999999999999863
No 145
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=38.84 E-value=1.8e+02 Score=27.20 Aligned_cols=71 Identities=8% Similarity=0.064 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeeeeccccccc-cChhhhHHHHHHHhCCeEEecccc
Q 022904 86 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 86 ~~~~l~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~-~~~~~~~~~~~~~~gi~via~spl 157 (290)
-++.+.+|++.-.+. ..|=|-++...+..+++. .-++++|+...-.- -..-..+.++|+.+|+.++.++..
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~-~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEE-QLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHc-CCCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 356677777775555 567777889999999874 34787887665432 122357899999999999987553
No 146
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=38.59 E-value=1.5e+02 Score=28.88 Aligned_cols=100 Identities=10% Similarity=0.035 Sum_probs=59.2
Q ss_pred cccccccCC----ChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCC
Q 022904 3 CHLVFTYGM----GLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY 78 (290)
Q Consensus 3 ~~~a~~Yg~----G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~ 78 (290)
+-.||+--+ |.+-.+|-. ++..+..-..+++ .+--+...-+.+...+++-++|+.||+++ |= .|..
T Consensus 7 tRFAPSPTG~lHiG~artAL~n---~l~Ar~~gG~fiL--RIEDTD~~R~~~~~~~~i~~~L~WLGl~w-De----~py~ 76 (513)
T PRK14895 7 TRFAPSPTGFLHIGSARTALFN---YLFARHHNGKFLL--RIEDTDKERSTKEAVEAIFSGLKWLGLDW-NG----EVIF 76 (513)
T ss_pred EeeCCCCCCCccHHHHHHHHHH---HHHHHHcCCEEEE--EECCCCccccChHHHHHHHHHHHHcCCCC-CC----Ccee
Confidence 445666422 677777775 3333433233333 22111112255788889999999999986 51 1222
Q ss_pred CCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHH
Q 022904 79 SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 115 (290)
Q Consensus 79 ~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~ 115 (290)
....++--.+.+++|.++|++ |..+| +.+.++..
T Consensus 77 QSeR~~~Y~~~a~~Li~~G~A-Y~CfC--t~eel~~~ 110 (513)
T PRK14895 77 QSKRNNLYKEAALKLLQNGKA-YYCFT--RQEEIERQ 110 (513)
T ss_pred EeCcHHHHHHHHHHHHHcCCe-EEecC--cHHHHHHH
Confidence 223255556889999999997 77777 55666554
No 147
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=38.58 E-value=3e+02 Score=24.85 Aligned_cols=94 Identities=19% Similarity=0.076 Sum_probs=52.2
Q ss_pred HhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEE-------------ecCCCCCccH
Q 022904 17 SMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQF-------------HWWDYSNPGY 83 (290)
Q Consensus 17 ~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~l-------------H~p~~~~~~~ 83 (290)
.||+.|+.+-+++. ..+||+|-.. . .+.+++|. .+|++++ +.|..... +
T Consensus 96 ~L~elI~~~k~~g~-~~tflvTNgs-------l-------pdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~-~ 157 (296)
T COG0731 96 NLGELIEEIKKRGK-KTTFLVTNGS-------L-------PDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDS-W 157 (296)
T ss_pred CHHHHHHHHHhcCC-ceEEEEeCCC-------h-------HHHHHHhc--cCCEEEEEeccCCHHHHHHhcCCCCcch-H
Confidence 35665656644443 3678887663 2 34444554 4566654 34444444 7
Q ss_pred HHHHHHHHHHHHcCCccE------EEccCCCHHHHHHHHHc--CCCeeeeecc
Q 022904 84 LDALNHLTDLKEEGKIKT------VALTNFDTERLRIILEN--GIPVVSNQVQ 128 (290)
Q Consensus 84 ~~~~~~l~~L~~~G~ir~------iGvs~~~~~~l~~~~~~--~~~~~~~q~~ 128 (290)
+.+++.|+.+.+.+.-+- +.--|++.+.+.++.+. ...++++|+.
T Consensus 158 e~ile~L~~~~~~~~~~~vir~tlvkg~N~~~e~~~~~a~ll~~~~Pd~velk 210 (296)
T COG0731 158 EKILEGLEIFRSEYKGRTVIRTTLVKGINDDEEELEEYAELLERINPDFVELK 210 (296)
T ss_pred HHHHHHHHHhhhcCCCcEEEEEEEeccccCChHHHHHHHHHHHhcCCCeEEEe
Confidence 899999999998632221 22225555444444443 4556666653
No 148
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=38.12 E-value=2e+02 Score=26.40 Aligned_cols=95 Identities=15% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHhhhC-CCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeeeecccccc
Q 022904 55 SIDVSRRRMD-VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVV 132 (290)
Q Consensus 55 ~~~~SL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~ 132 (290)
++++.++.+. ++..++.++-.|-...+ +..+.+|++..-+. ..|=|.++...+..+++ .-.++++|+....+
T Consensus 188 ~~~~A~~~~~~l~~~~i~~iEeP~~~~d-----~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~-~~~~d~v~~d~~~~ 261 (352)
T cd03325 188 SKPMAKDLAKELEPYRLLFIEEPVLPEN-----VEALAEIAARTTIPIATGERLFSRWDFKELLE-DGAVDIIQPDISHA 261 (352)
T ss_pred CHHHHHHHHHhccccCCcEEECCCCccC-----HHHHHHHHHhCCCCEEecccccCHHHHHHHHH-hCCCCEEecCcccc
Q ss_pred c-cChhhhHHHHHHHhCCeEEecc
Q 022904 133 D-MRPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 133 ~-~~~~~~~~~~~~~~gi~via~s 155 (290)
- ...-..+.+.|+++|+.++.++
T Consensus 262 GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 262 GGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CCHHHHHHHHHHHHHcCCcEeccC
No 149
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=38.03 E-value=1.5e+02 Score=26.91 Aligned_cols=86 Identities=19% Similarity=0.143 Sum_probs=57.3
Q ss_pred cEEEEecCCCCCccHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeeeecccccccc-ChhhhHHHHHHH
Q 022904 69 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQL 146 (290)
Q Consensus 69 Dl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~ 146 (290)
++.++-.|-. .+-+..+.+|++...+. ..|=|.++...+..++.. ..++++|+...-+-. ..-..+...|+.
T Consensus 199 ~~~~iEeP~~-----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-~~~dvi~~d~~~~GGit~~~~~~~~A~~ 272 (324)
T TIGR01928 199 QLLYIEEPFK-----IDDLSMLDELAKGTITPICLDESITSLDDARNLIEL-GNVKVINIKPGRLGGLTEVQKAIETCRE 272 (324)
T ss_pred CCcEEECCCC-----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHc-CCCCEEEeCcchhcCHHHHHHHHHHHHH
Confidence 4555554432 23456677787765554 567778889999888873 347777777654221 123578999999
Q ss_pred hCCeEEeccccccc
Q 022904 147 TGVKLITYGTVMGG 160 (290)
Q Consensus 147 ~gi~via~spl~~G 160 (290)
+|+.++..+.+..|
T Consensus 273 ~gi~~~~~~~~es~ 286 (324)
T TIGR01928 273 HGAKVWIGGMLETG 286 (324)
T ss_pred cCCeEEEcceEccc
Confidence 99999987666554
No 150
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=38.03 E-value=1.4e+02 Score=27.13 Aligned_cols=144 Identities=12% Similarity=0.230 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeeeeccccccc---cChhhhHHHHHHHhC--CeEEeccc
Q 022904 83 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVD---MRPQQKMAELCQLTG--VKLITYGT 156 (290)
Q Consensus 83 ~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~---~~~~~~~~~~~~~~g--i~via~sp 156 (290)
..--.+.++++-+.|.+ |=+|..+...+..+++. ..|+.+-......+. |+...+.+...+++| |++..+.+
T Consensus 159 T~~G~~vV~~mn~lGm~--vDvSH~s~~t~~Dv~~~s~~PviaSHSn~ral~~h~RNltDe~iraia~~GGviGi~~~~~ 236 (320)
T PF01244_consen 159 TPFGREVVREMNRLGML--VDVSHLSEKTFWDVLEISKKPVIASHSNARALCPHPRNLTDEQIRAIAERGGVIGINFYPA 236 (320)
T ss_dssp -HHHHHHHHHHHHHT-E--EE-TTB-HHHHHHHHHH-SSEEEECCEEBTTTS--TTSB-HHHHHHHHHTT-EEEEESSHH
T ss_pred ChHHHHHHHHHHHcCCe--eeeccCCHHHHHHHHhhcCCCEEEeccChHhhCCCCCCCCHHHHHHHHHCCcEEEEEcchh
Confidence 45566777788888886 78888888888888877 455444333333222 233457788888777 66666655
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCccee
Q 022904 157 VMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGS 236 (290)
Q Consensus 157 l~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~~~al~~~l~~~~v~~~ 236 (290)
|-.. .. ....-+..+++-+.-+++--|..-..+---| .+....
T Consensus 237 fl~~----~~-----------------------------~~~~~~~~~~~Hi~y~~~l~G~dhVgiGsDf----dg~~~~ 279 (320)
T PF01244_consen 237 FLGD----DW-----------------------------DPRASLDDLVDHIDYIVDLVGIDHVGIGSDF----DGIDGP 279 (320)
T ss_dssp HHST----TH-----------------------------SSG-BHHHHHHHHHHHHHHH-GGGEEEE--B----TTTSSH
T ss_pred hhcc----cc-----------------------------cccccHHHHHHHHHHHHHhcCCCeEEECccc----CCCCCC
Confidence 5221 00 0011133334444444444443222222222 223333
Q ss_pred eecCCCCCHhHHHHhHhhhcC-CCCHHHHHHH
Q 022904 237 MIGVRLGLAEHIQDTNAIFML-SLDEDDVNSI 267 (290)
Q Consensus 237 i~g~~~~~~~~l~enl~a~~~-~Lt~e~~~~l 267 (290)
..|.. ++.++....+++.. -+++++++.|
T Consensus 280 ~~gl~--~~~~~~~l~~~L~~rG~s~~~i~kI 309 (320)
T PF01244_consen 280 PEGLE--DPSDLPNLTEELLKRGYSEEDIEKI 309 (320)
T ss_dssp BBTBS--SGGGHHHHHHHHHHTTS-HHHHHHH
T ss_pred CCccC--CHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 67888 88988888888755 7999998886
No 151
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=37.69 E-value=2.9e+02 Score=25.29 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEE--------e-cCCCCCccHHHHHHHHHHHHHc-CCccEEEccC---CCHHHH
Q 022904 46 KMTSSIVRESIDVSRRRMDVPCLDMLQF--------H-WWDYSNPGYLDALNHLTDLKEE-GKIKTVALTN---FDTERL 112 (290)
Q Consensus 46 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~l--------H-~p~~~~~~~~~~~~~l~~L~~~-G~ir~iGvs~---~~~~~l 112 (290)
.++.+.+.+ +-+.|.+.|+++|.+-.. . .+.... -++.++.+++. ...+...+.. .+.+.+
T Consensus 21 ~f~~~~~~~-i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~-----~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl 94 (337)
T PRK08195 21 QYTLEQVRA-IARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHT-----DEEYIEAAAEVVKQAKIAALLLPGIGTVDDL 94 (337)
T ss_pred ccCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCccccCCCCCCC-----HHHHHHHHHHhCCCCEEEEEeccCcccHHHH
Confidence 456666555 445599999999988532 1 221111 23344444322 3345444332 256777
Q ss_pred HHHHHcCCCeeeeeccccccccChhhhHHHHHHHhCCeEEec
Q 022904 113 RIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 154 (290)
Q Consensus 113 ~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 154 (290)
+.+.+.++ +.+.+..+.-+.....+.+++++++|..+...
T Consensus 95 ~~a~~~gv--d~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 95 KMAYDAGV--RVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHHcCC--CEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 77776544 44444444333333467899999999887764
No 152
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=37.68 E-value=2.3e+02 Score=26.23 Aligned_cols=99 Identities=11% Similarity=0.152 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCC-ccEEEccCCCHHHHHHHHHcCCCeee
Q 022904 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 124 (290)
Q Consensus 46 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~ 124 (290)
.++.+...+ +-+.|.++|+++|.+- +|.. . ++-++.+..+.+.+. .+-.+++....+.++.+.+.+.+...
T Consensus 18 ~~s~~~k~~-ia~~L~~~Gv~~IEvG---~p~~--~--~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (363)
T TIGR02090 18 SLTVEQKVE-IARKLDELGVDVIEAG---FPIA--S--EGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIH 89 (363)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEe---CCCC--C--hHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEE
Confidence 345555544 5555999999988874 3322 1 233566667766554 44556666778889988886554433
Q ss_pred eecccccccc------Ch------hhhHHHHHHHhCCeEE
Q 022904 125 NQVQHSVVDM------RP------QQKMAELCQLTGVKLI 152 (290)
Q Consensus 125 ~q~~~n~~~~------~~------~~~~~~~~~~~gi~vi 152 (290)
+-+..|..+. .. -.+.+++++++|..+.
T Consensus 90 i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 90 TFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3333332211 11 2367889999998764
No 153
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=37.67 E-value=55 Score=24.23 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=38.1
Q ss_pred cCCCHHHHHHHHHcCCCeeeeecccccccc-ChhhhHHHHHHHhCCeEEeccccccc
Q 022904 105 TNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 105 s~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl~~G 160 (290)
+.++...+.++++. ..++++|+...-.-. ..-..+.++|+++|+.++.++. ..+
T Consensus 3 ~~~~~~~~~~li~~-~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEA-GAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHT-TSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHc-CCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 45788889999884 347878877654311 2235789999999999999986 443
No 154
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=37.63 E-value=2.4e+02 Score=26.71 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHc------CCccEEEccCCCHHHHHHHHHcCCCeeeeecccccccc-ChhhhHHHHHHHhCCeEEecccc
Q 022904 85 DALNHLTDLKEE------GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 85 ~~~~~l~~L~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl 157 (290)
+.++.+.+|++. ..--..+=+-++.+.+..+++. .-.+++|+..+-+-. ....++.++|+.+||.++..+..
T Consensus 279 ~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~-~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 279 AQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDA-KAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred hhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHh-CCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 345566666654 2223445556678888888774 346777776664211 12357899999999999987655
No 155
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.42 E-value=3.3e+02 Score=25.05 Aligned_cols=94 Identities=15% Similarity=0.092 Sum_probs=59.6
Q ss_pred CcccEEEEecCCCC----------CccHHHHHHHHHH-HHHcCC---ccEEEcc--CCCHHHHHHHHHc--CCCeeeeec
Q 022904 66 PCLDMLQFHWWDYS----------NPGYLDALNHLTD-LKEEGK---IKTVALT--NFDTERLRIILEN--GIPVVSNQV 127 (290)
Q Consensus 66 d~iDl~~lH~p~~~----------~~~~~~~~~~l~~-L~~~G~---ir~iGvs--~~~~~~l~~~~~~--~~~~~~~q~ 127 (290)
+....+-||.++.. ...++++++++.+ +.+.|+ |+++=+. |.+.+.+.++.+. +.+..++-+
T Consensus 211 ~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLI 290 (345)
T PRK14457 211 QFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLI 290 (345)
T ss_pred ceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEe
Confidence 34477889987432 1115677777766 455553 3444333 5567777777665 666788889
Q ss_pred cccccccC----hh----hhHHHHHHHhCCeEEecccccc
Q 022904 128 QHSVVDMR----PQ----QKMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 128 ~~n~~~~~----~~----~~~~~~~~~~gi~via~spl~~ 159 (290)
+||++... +. ..+.+..+++|+.+......+.
T Consensus 291 Pynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 291 PYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 99986432 11 2356677788999988766644
No 156
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=37.38 E-value=80 Score=30.15 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=71.4
Q ss_pred ChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCC-------CHHHH--HHHHHHHHhhhCCCcccEEEEecCCCCCcc
Q 022904 12 GLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKM-------TSSIV--RESIDVSRRRMDVPCLDMLQFHWWDYSNPG 82 (290)
Q Consensus 12 G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~-------~~~~i--~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~ 82 (290)
|.=|.++..+-..+ ...-+.+++|++=++.....- ..-.| +-+-.+.-.||.+.|+|.. .+.
T Consensus 148 GTyeT~~~~~r~h~-~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~--------a~~ 218 (561)
T COG2987 148 GTYETFAEAGRQHF-GGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI--------AET 218 (561)
T ss_pred chHHHHHHHHHHhc-CCCccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh--------cCC
Confidence 66677766444444 334678899999887421100 00000 0011222357788898863 333
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeee--eecccc
Q 022904 83 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS--NQVQHS 130 (290)
Q Consensus 83 ~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~--~q~~~n 130 (290)
.++++...++..+.|+-.+||+-.-..+.+.++++.++.+|+ -|+.-|
T Consensus 219 ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaH 268 (561)
T COG2987 219 LDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAH 268 (561)
T ss_pred HHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceeccccccc
Confidence 789999999999999999999998888999999987655554 555433
No 157
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=37.34 E-value=3.4e+02 Score=25.10 Aligned_cols=99 Identities=10% Similarity=0.065 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcC-CccEEEccCCCHHHHHHHHHcCCCeee
Q 022904 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 124 (290)
Q Consensus 46 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~ 124 (290)
.++.+...+ +-+.|.++|+++|.+- .|.. . +.-++.+..+.+.+ ..+..+++....+.++.+.+.+.+...
T Consensus 19 ~~s~~~k~~-ia~~L~~~Gv~~IEvG---~p~~--~--~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~ 90 (365)
T TIGR02660 19 AFTAAEKLA-IARALDEAGVDELEVG---IPAM--G--EEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVH 90 (365)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEe---CCCC--C--HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEE
Confidence 345555554 4555999999888884 3322 1 33466677777664 367777777778889888876544333
Q ss_pred eecccccccc------Ch------hhhHHHHHHHhCCeEE
Q 022904 125 NQVQHSVVDM------RP------QQKMAELCQLTGVKLI 152 (290)
Q Consensus 125 ~q~~~n~~~~------~~------~~~~~~~~~~~gi~vi 152 (290)
+-+..|..+. .. -.+.+++++++|..+.
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 3333332111 11 1367889999998754
No 158
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=37.24 E-value=1.3e+02 Score=29.55 Aligned_cols=59 Identities=17% Similarity=0.089 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHH
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 115 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~ 115 (290)
.......+|.+.|+.||.++ |- +....+.++.-.+.+++|.++|++ |...| +.+++.+.
T Consensus 58 ~~~e~~~~I~~dL~WLGl~w-D~-----~~~qSdr~~~y~~~a~~Li~~G~A-Y~C~c--s~eel~~~ 116 (523)
T PLN03233 58 EKAEFEESIIEDLGKIEIKP-DS-----VSFTSDYFEPIRCYAIILIEEGLA-YMDDT--PQEEMKKE 116 (523)
T ss_pred cchHHHHHHHHHHHHhCCCC-CC-----CccccccHHHHHHHHHHHHHcCCe-EecCC--CHHHHHHH
Confidence 45788899999999999986 62 223344478889999999999996 55444 56666544
No 159
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=37.12 E-value=3.3e+02 Score=24.90 Aligned_cols=101 Identities=13% Similarity=0.203 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEE--------Ee-cCCCCCccHHHHHHHHHHHHHcCCccEEEccC---CCHHHHH
Q 022904 46 KMTSSIVRESIDVSRRRMDVPCLDMLQ--------FH-WWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---FDTERLR 113 (290)
Q Consensus 46 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~--------lH-~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~---~~~~~l~ 113 (290)
.++.+.+.+ +-+.|.+.|+++|.+-. +. .+....+ . +.+..+.+..+. .+...+.. .+.+.++
T Consensus 20 ~f~~~~~~~-ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~-~-e~i~~~~~~~~~--~~~~~ll~pg~~~~~dl~ 94 (333)
T TIGR03217 20 QFTIEQVRA-IAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTD-L-EYIEAAADVVKR--AKVAVLLLPGIGTVHDLK 94 (333)
T ss_pred cCCHHHHHH-HHHHHHHcCCCEEEEecCCCCCCccccCCCCCCCh-H-HHHHHHHHhCCC--CEEEEEeccCccCHHHHH
Confidence 455565554 55568899999998851 11 1221122 2 222333222222 33332321 2567787
Q ss_pred HHHHcCCCeeeeeccccccccChhhhHHHHHHHhCCeEEe
Q 022904 114 IILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 114 ~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
.+.+.+ ++.+.+..+.-+-....+.+++++++|..+..
T Consensus 95 ~a~~~g--vd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~ 132 (333)
T TIGR03217 95 AAYDAG--ARTVRVATHCTEADVSEQHIGMARELGMDTVG 132 (333)
T ss_pred HHHHCC--CCEEEEEeccchHHHHHHHHHHHHHcCCeEEE
Confidence 777654 44444444443333345789999999987765
No 160
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=37.10 E-value=3.2e+02 Score=24.79 Aligned_cols=123 Identities=14% Similarity=0.128 Sum_probs=68.5
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCH
Q 022904 30 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT 109 (290)
Q Consensus 30 ~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~ 109 (290)
+.-.+.|=.|..+. ...+.+.+.+++.+....-++.+++ ..+.+..+.++- ..++...-.....
T Consensus 153 ~~~~l~IEiK~~~~-------~~~~~v~~~i~~~~~~r~~v~sf~s-------~~~~l~~~r~l~--P~~~~~s~~~~~~ 216 (309)
T cd08613 153 PDRRFLINFKSDDA-------AEGELLAEKLATLPRKRLQVLTVYG-------GDKPIAALRELT--PDLRTLSKASMKD 216 (309)
T ss_pred CCCcEEEEeCCCCc-------cHHHHHHHHHHhcCccceEEEEEEC-------CHHHHHHHHHHC--CCCceecccchHH
Confidence 33568898997431 1235667777788776555555664 122233333332 3444432222111
Q ss_pred HHHHHHHHc--CC-C-e---eeeeccccccccCh--hhhHHHHHHHhCCeEEeccccccccccccccC
Q 022904 110 ERLRIILEN--GI-P-V---VSNQVQHSVVDMRP--QQKMAELCQLTGVKLITYGTVMGGLLSEKFLD 168 (290)
Q Consensus 110 ~~l~~~~~~--~~-~-~---~~~q~~~n~~~~~~--~~~~~~~~~~~gi~via~spl~~G~L~~~~~~ 168 (290)
-.+..+.-. +. | . +++|++.+..-... ...+++.++..|..|+.|.|..+|-++..+..
T Consensus 217 ~~~~~~~~~~~g~~p~~~~~~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~~~~~~~~d~ 284 (309)
T cd08613 217 CLIEYLALGWTGYVPDSCRNTTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTGGEFSEGFDT 284 (309)
T ss_pred HHHHHHhhcccccCCccccCCeEecCccccceEEeCCHHHHHHHHHcCCeEEEEecccCCcccCCCCC
Confidence 122222111 22 2 3 56788877532221 35799999999999999999877766554443
No 161
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=36.87 E-value=1.6e+02 Score=28.00 Aligned_cols=90 Identities=10% Similarity=0.115 Sum_probs=56.5
Q ss_pred HhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc--C-----CCeeeeecccccc
Q 022904 60 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--G-----IPVVSNQVQHSVV 132 (290)
Q Consensus 60 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~--~-----~~~~~~q~~~n~~ 132 (290)
.+.||++|. ++..|-.... ..-+....+-+.|-+.++|..+.+++++++.+.. . -||-+|-+ .++-
T Consensus 7 ~~~lgiryP---ii~gpMa~Gi---ss~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~ 79 (418)
T cd04742 7 KEDYGLRYA---YVAGAMARGI---ASAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPD 79 (418)
T ss_pred HHHhCCCcc---EECCcccCCC---CCHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCC
Confidence 456676554 3444432111 1122344566789999999999999998877765 1 25666554 3332
Q ss_pred ccChhhhHHHHHHHhCCeEEeccc
Q 022904 133 DMRPQQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 133 ~~~~~~~~~~~~~~~gi~via~sp 156 (290)
+...+.++++.+.++||.++.-+.
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEecc
Confidence 233345789999999999876553
No 162
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=36.63 E-value=88 Score=28.36 Aligned_cols=63 Identities=13% Similarity=0.032 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 118 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~ 118 (290)
..+...+++.+.|+.||+++=.-.+.. ...++--.+++++|+++|++ |...| +.+++.+..+.
T Consensus 48 ~~~~~~~~i~~~L~wlGl~~D~~~~~Q-----S~r~~~Y~~~~~~L~~~g~a-Y~C~C--sr~~l~~~r~~ 110 (314)
T PF00749_consen 48 CRPEFYDAILEDLRWLGLEWDYGPYYQ-----SDRLEIYQEAAEKLIDKGKA-YPCFC--SREELKAAREA 110 (314)
T ss_dssp CHHHHHHHHHHHHHHHT---STCEEEG-----GGGHHHHHHHHHHHHHTTSE-EEEES--EHHHHHHHHHH
T ss_pred chhhHHHHHHhheeEEEEecCCeEEeH-----HHHHHHHHHHHHHHhhcCCC-ccccC--CHHHHHHHHHH
Confidence 578889999999999999864122222 23367778889999999998 77777 67777776653
No 163
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=36.61 E-value=4e+02 Score=25.74 Aligned_cols=102 Identities=9% Similarity=0.019 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcC-CccEEEcc----CC--CHHHHHHHHHcC
Q 022904 47 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALT----NF--DTERLRIILENG 119 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G-~ir~iGvs----~~--~~~~l~~~~~~~ 119 (290)
.+++.+.+.++...++.|+.. +.+.+.+.... ...+.+.++.|+++| .-..++++ +. +.+.+..+.++|
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~---~~~~Dd~f~~~-~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG 297 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGF---FILADEEPTIN-RKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAG 297 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCE---EEEEecccccC-HHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhC
Confidence 478999999999888888654 34444333333 356677778888887 32334433 22 445555555544
Q ss_pred CCeeeeeccc--------cccccC----hhhhHHHHHHHhCCeEEec
Q 022904 120 IPVVSNQVQH--------SVVDMR----PQQKMAELCQLTGVKLITY 154 (290)
Q Consensus 120 ~~~~~~q~~~--------n~~~~~----~~~~~~~~~~~~gi~via~ 154 (290)
. ..+++.. ..++.. ...+.++.|+++||.+.+.
T Consensus 298 ~--~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~ 342 (497)
T TIGR02026 298 L--VHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQ 342 (497)
T ss_pred C--cEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 2 2222211 111111 1246789999999987653
No 164
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=36.49 E-value=3.2e+02 Score=24.57 Aligned_cols=70 Identities=10% Similarity=0.074 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCC----ccEEEccCCCHHHHHHHHHc--CCCeeeeeccccccccC---------hhhhHHHHHHHh
Q 022904 83 YLDALNHLTDLKEEGK----IKTVALTNFDTERLRIILEN--GIPVVSNQVQHSVVDMR---------PQQKMAELCQLT 147 (290)
Q Consensus 83 ~~~~~~~l~~L~~~G~----ir~iGvs~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~---------~~~~~~~~~~~~ 147 (290)
++.++++++.+++.|. |..+.+...+.+++..+++. ..++.+..++|.++... ...++++.++++
T Consensus 143 ~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~ 222 (331)
T PRK00164 143 LDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAER 222 (331)
T ss_pred HHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhc
Confidence 5677777777777764 22333334444555555554 33344444444443221 123466666666
Q ss_pred CCeEE
Q 022904 148 GVKLI 152 (290)
Q Consensus 148 gi~vi 152 (290)
|+.+.
T Consensus 223 ~~~~~ 227 (331)
T PRK00164 223 GWTLQ 227 (331)
T ss_pred cCccc
Confidence 55443
No 165
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.30 E-value=2.2e+02 Score=26.53 Aligned_cols=77 Identities=10% Similarity=0.059 Sum_probs=52.7
Q ss_pred HHHHHHHHHH-HHHcC---CccEEEcc--CCCHHHHHHHHHc--CCCeeeeeccccccccCh--------hhhHHHHHHH
Q 022904 83 YLDALNHLTD-LKEEG---KIKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDMRP--------QQKMAELCQL 146 (290)
Q Consensus 83 ~~~~~~~l~~-L~~~G---~ir~iGvs--~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~~--------~~~~~~~~~~ 146 (290)
++++++++.+ +.+.| +|+++=+. |.+.+.+..+.+. +.+..++-++||++.... -..+.+..++
T Consensus 261 l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~~ 340 (368)
T PRK14456 261 LDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRLLD 340 (368)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHHHH
Confidence 6888888875 44555 23444333 4566666666665 566788899999875532 2356778889
Q ss_pred hCCeEEecccccc
Q 022904 147 TGVKLITYGTVMG 159 (290)
Q Consensus 147 ~gi~via~spl~~ 159 (290)
+|+.+......+.
T Consensus 341 ~Gi~vtvR~~~G~ 353 (368)
T PRK14456 341 AGLQVTVRKSYGT 353 (368)
T ss_pred CCCcEEeeCCCCc
Confidence 9999999877654
No 166
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=36.14 E-value=3.7e+02 Score=25.25 Aligned_cols=100 Identities=8% Similarity=0.006 Sum_probs=58.1
Q ss_pred hHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCcc----HHHHHHH-
Q 022904 15 KISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG----YLDALNH- 89 (290)
Q Consensus 15 E~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~----~~~~~~~- 89 (290)
++-|-++++++.++.+.+=|+|.|=+.+.-- .+++...++ +. ..+.++.+|.|+..... .+..+.+
T Consensus 76 ~~~L~~~i~~~~~~~~p~~I~V~stC~~e~i---GdDi~~~~~----~~--~~~~vv~v~tpgf~g~~~~~G~~~a~~~i 146 (416)
T cd01980 76 FEDIREAIRKLADPPAYTFIPVISLCVAETA---GVAEELLPK----QI--DGVRVILVRGPAFPIHSHPEAKDVGAMLL 146 (416)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCChhhhh---cCchhhhhc----cc--CCCeEEEecCCCccCCcchhHHHHHHHHH
Confidence 5677778888766666677888887755322 244444333 22 24588999999776321 1222222
Q ss_pred HHHHHH------cCCccEEEccC-CCHHHHHHHHHc-CCCee
Q 022904 90 LTDLKE------EGKIKTVALTN-FDTERLRIILEN-GIPVV 123 (290)
Q Consensus 90 l~~L~~------~G~ir~iGvs~-~~~~~l~~~~~~-~~~~~ 123 (290)
++.+.. .++|--||.-+ .+.+.+..+++. |+.+.
T Consensus 147 ~~~l~~~~~~~~~~~vniiG~~~~~d~~ei~~lL~~~Gl~~~ 188 (416)
T cd01980 147 LARFEDFDGPVAEPSLALLGEMFPADPVAIGSVLERMGLAAV 188 (416)
T ss_pred HHhhhccccCCCCCeEEEEccCCCCCHHHHHHHHHHcCCcee
Confidence 233432 35777788333 355678887775 55543
No 167
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=36.10 E-value=3.5e+02 Score=24.95 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=56.0
Q ss_pred EEEecCCCC----------CccHHHHHHHHHHHHH-cCC---ccEEEcc--CCCHHHHHHHHHc--CCCeeeeecccccc
Q 022904 71 LQFHWWDYS----------NPGYLDALNHLTDLKE-EGK---IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVV 132 (290)
Q Consensus 71 ~~lH~p~~~----------~~~~~~~~~~l~~L~~-~G~---ir~iGvs--~~~~~~l~~~~~~--~~~~~~~q~~~n~~ 132 (290)
+-||.+++. ...++++++++.++.+ .|. |+++=+. |-+.+.+..+.+. +.++.++-++||+.
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 669988622 1126788888877654 442 2233222 4456776666655 66778888999986
Q ss_pred ccC----hh----hhHHHHHHHhCCeEEecccccc
Q 022904 133 DMR----PQ----QKMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 133 ~~~----~~----~~~~~~~~~~gi~via~spl~~ 159 (290)
... +. ..+.+..+++|+.++.+...+.
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 431 11 2356677788999998877654
No 168
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=36.09 E-value=3e+02 Score=24.07 Aligned_cols=106 Identities=11% Similarity=0.054 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeee
Q 022904 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 125 (290)
Q Consensus 46 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~ 125 (290)
..+.+...+-.+-.++-+++++|-|=.+.++..-.++.-+++++-+.|+++|-+ -+=.++-++-..+++.+.| ...+
T Consensus 72 c~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~-VlPY~~~D~v~akrL~d~G--caav 148 (247)
T PF05690_consen 72 CRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV-VLPYCTDDPVLAKRLEDAG--CAAV 148 (247)
T ss_dssp -SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-E-EEEEE-S-HHHHHHHHHTT---SEB
T ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCE-EeecCCCCHHHHHHHHHCC--CCEE
Confidence 568899999999999999999999988888766667678999999999999965 3445566777777777652 3333
Q ss_pred eccccccccCh----hhhHHHHHHHhCCeEEec
Q 022904 126 QVQHSVVDMRP----QQKMAELCQLTGVKLITY 154 (290)
Q Consensus 126 q~~~n~~~~~~----~~~~~~~~~~~gi~via~ 154 (290)
+--=+|+-... ...+--.+.+.+|.||.-
T Consensus 149 MPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvD 181 (247)
T PF05690_consen 149 MPLGSPIGSGRGIQNPYNLRIIIERADVPVIVD 181 (247)
T ss_dssp EEBSSSTTT---SSTHHHHHHHHHHGSSSBEEE
T ss_pred EecccccccCcCCCCHHHHHHHHHhcCCcEEEe
Confidence 33333322111 123444455668998873
No 169
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=36.06 E-value=3.6e+02 Score=26.22 Aligned_cols=120 Identities=12% Similarity=0.132 Sum_probs=68.9
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCH
Q 022904 30 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT 109 (290)
Q Consensus 30 ~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~ 109 (290)
.+.+++|+-.+..+ ++.-+.+..-+.+.+++-++.- -=+-|.--.....+.......+..+++.|.--+|-=-.-+-
T Consensus 350 ~~~~l~VsINl~a~--Dl~s~rli~~~~~~l~~~~v~p-qQI~lElTER~f~D~~~~~~iI~r~ReaG~~IyIDDFGTGY 426 (524)
T COG4943 350 QHRDLHVSINLSAS--DLASPRLIDRLNRKLAQYQVRP-QQIALELTERTFADPKKMTPIILRLREAGHEIYIDDFGTGY 426 (524)
T ss_pred hCcceEEEEeeeeh--hhcCchHHHHHHHHHHhcCcCh-HHheeehhhhhhcCchhhhHHHHHHHhcCCeEEEccCcCcc
Confidence 34668888777643 5566778888888888776531 11112211222222356777889999999965542222234
Q ss_pred HHHHHHHHcCCCeeeeeccccccc--------cChhhhHHHHHHHhCCeEEec
Q 022904 110 ERLRIILENGIPVVSNQVQHSVVD--------MRPQQKMAELCQLTGVKLITY 154 (290)
Q Consensus 110 ~~l~~~~~~~~~~~~~q~~~n~~~--------~~~~~~~~~~~~~~gi~via~ 154 (290)
+.+..+.+ .++|..-+.-+..+ ..--..+++.|++.|+.+++=
T Consensus 427 SnL~YLq~--L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaE 477 (524)
T COG4943 427 SNLHYLQS--LPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAE 477 (524)
T ss_pred hhHHHHhh--CCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEee
Confidence 55555554 33443333333221 112346888999999888874
No 170
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=35.81 E-value=3.8e+02 Score=25.27 Aligned_cols=103 Identities=12% Similarity=0.044 Sum_probs=61.6
Q ss_pred hhHHhhhchHHHhhhCCC-CcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCcc----HHHHHH
Q 022904 14 LKISMASSSIEFVERGHQ-SSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG----YLDALN 88 (290)
Q Consensus 14 sE~~lG~~~~~~~~~~~R-~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~----~~~~~~ 88 (290)
.|+-|.++|+++.++.+. +-++|.|-+.+.- -.+++..-+++.-++++ ++++.+|.|...... ...+.+
T Consensus 82 g~~kL~~~I~~~~~~~~p~~~I~V~tTC~~~i---IGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~s~~~G~~~a~~ 155 (421)
T cd01976 82 GDKKLAKAIDEAYELFPLNKGISVQSECPVGL---IGDDIEAVARKASKELG---IPVVPVRCEGFRGVSQSLGHHIAND 155 (421)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEECCChHHH---hccCHHHHHHHHHHhhC---CCEEEEeCCCccCCcccHHHHHHHH
Confidence 367788889898877766 7788888775422 23555555555555554 589999998754311 222232
Q ss_pred HHH-HHHH--------cCCccEEEccCC--CHHHHHHHHHc-CCCe
Q 022904 89 HLT-DLKE--------EGKIKTVALTNF--DTERLRIILEN-GIPV 122 (290)
Q Consensus 89 ~l~-~L~~--------~G~ir~iGvs~~--~~~~l~~~~~~-~~~~ 122 (290)
++. .+.. .++|--||-.++ +.+.+..+++. ++++
T Consensus 156 ai~~~l~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gi~v 201 (421)
T cd01976 156 AIRDHILGKRNEFEPTPYDVNIIGDYNIGGDAWASRILLEEMGLRV 201 (421)
T ss_pred HHHHHHhccCCccCCCCCeEEEEecCCCCccHHHHHHHHHHcCCeE
Confidence 222 2321 356777885554 34557777764 4443
No 171
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=35.52 E-value=80 Score=25.39 Aligned_cols=63 Identities=24% Similarity=0.266 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCcceeeecCCCCCHhHHHHhHhhhcCCCCHHHHHHHHHH
Q 022904 206 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEV 270 (290)
Q Consensus 206 ~~l~~la~~~g~s~~~~al~~~l~~~~v~~~i~g~~~~~~~~l~enl~a~~~~Lt~e~~~~l~~~ 270 (290)
+.+.+.-.+.|+|..++|=+==++.-.+.+++.|-.+.++++.+...+.+ .|+.+.+..|...
T Consensus 11 ~~Ll~AK~~KGLTwe~IAe~iG~sevwvaaa~lGQ~~ls~e~A~kla~lL--gL~~e~~~~l~~~ 73 (150)
T TIGR00673 11 DALLESKKKKGLTFADIADGLGLAEVFVAAALYGQAAAPADEARLVGAKL--DLDEDSILELQMA 73 (150)
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHhCCCCCCHHHHHHHHHHh--CcCHHHHHHHhcC
Confidence 44444445556666665544444443445555565555788887777766 5888888887654
No 172
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=35.33 E-value=1.1e+02 Score=24.96 Aligned_cols=96 Identities=22% Similarity=0.271 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhhCCCc----ccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CC--Ceee
Q 022904 52 VRESIDVSRRRMDVPC----LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GI--PVVS 124 (290)
Q Consensus 52 i~~~~~~SL~~Lg~d~----iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~-~~--~~~~ 124 (290)
.+..++..++.+|.+. ++.+.-... .... +.++.+.|+.|++.| ++-.-+||.....+...++. ++ .|+.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~-~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~ 137 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAYL-RLPP-HPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKHAGLDDPFDA 137 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHh-cCCC-CCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHCCChhhhhe
Confidence 3566677777777651 111111111 1122 467888999999987 45566888887777777664 43 2443
Q ss_pred eeccccccccChhhh-HHHHHHHhCCe
Q 022904 125 NQVQHSVVDMRPQQK-MAELCQLTGVK 150 (290)
Q Consensus 125 ~q~~~n~~~~~~~~~-~~~~~~~~gi~ 150 (290)
+-..-..-...+..+ +...|++.|+.
T Consensus 138 i~~s~~~~~~KP~~~~~~~~~~~~~~~ 164 (198)
T TIGR01428 138 VLSADAVRAYKPAPQVYQLALEALGVP 164 (198)
T ss_pred eEehhhcCCCCCCHHHHHHHHHHhCCC
Confidence 332222212334334 34455566653
No 173
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.25 E-value=2.3e+02 Score=26.15 Aligned_cols=89 Identities=13% Similarity=0.061 Sum_probs=58.7
Q ss_pred EEEecCCCCC----------ccHHHHHHHHHHHHHcCC----ccEEEc--cCCCHHHHHHHHHc--CCCeeeeecccccc
Q 022904 71 LQFHWWDYSN----------PGYLDALNHLTDLKEEGK----IKTVAL--TNFDTERLRIILEN--GIPVVSNQVQHSVV 132 (290)
Q Consensus 71 ~~lH~p~~~~----------~~~~~~~~~l~~L~~~G~----ir~iGv--s~~~~~~l~~~~~~--~~~~~~~q~~~n~~ 132 (290)
+-||.++... ..+++++++++.+.+.+. |+++=+ -|-+.+.+..+.+. +.+..++-++||++
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~ 302 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPV 302 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcC
Confidence 6678775331 125889999998877542 234423 35566777777665 56678888999987
Q ss_pred ccC----h----hhhHHHHHHHhCCeEEecccccc
Q 022904 133 DMR----P----QQKMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 133 ~~~----~----~~~~~~~~~~~gi~via~spl~~ 159 (290)
... + -..+.+.++++|+.+......+.
T Consensus 303 ~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~ 337 (356)
T PRK14455 303 PERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGT 337 (356)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCc
Confidence 532 1 23456778899999988776644
No 174
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=35.12 E-value=2.7e+02 Score=25.50 Aligned_cols=101 Identities=9% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeeeeccccc
Q 022904 53 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSV 131 (290)
Q Consensus 53 ~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~ 131 (290)
.....+-++.| +.+++.++-.|-+... ++.+.+|++...|. ..|=+-++...+..+++ ...++++|+...-
T Consensus 201 ~~~A~~~~~~l--~~~~~~~iEeP~~~~~-----~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~-~~~~d~~~~d~~~ 272 (365)
T cd03318 201 ESTAIRALPRL--EAAGVELIEQPVPREN-----LDGLARLRSRNRVPIMADESVSGPADAFELAR-RGAADVFSLKIAK 272 (365)
T ss_pred HHHHHHHHHHH--HhcCcceeeCCCCccc-----HHHHHHHHhhcCCCEEcCcccCCHHHHHHHHH-hCCCCeEEEeecc
Q ss_pred cccCh-hhhHHHHHHHhCCeEEecccccccc
Q 022904 132 VDMRP-QQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 132 ~~~~~-~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
+-.-. -.++...|+++|+.++..+-+..|+
T Consensus 273 ~GGit~~~~~~~~a~~~gi~~~~~~~~~s~i 303 (365)
T cd03318 273 SGGLRRAQKVAAIAEAAGIALYGGTMLESSI 303 (365)
T ss_pred cCCHHHHHHHHHHHHHcCCceeecCcchhHH
No 175
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=35.09 E-value=72 Score=26.88 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=35.7
Q ss_pred cCCChHHHHHHHHHhCCCcceeeecCCCCCHhHHHHhHhhh
Q 022904 215 HGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 255 (290)
Q Consensus 215 ~g~s~~~~al~~~l~~~~v~~~i~g~~~~~~~~l~enl~a~ 255 (290)
.+.|-.+.||+|+..++....++.|+..+..+|.-.|+..+
T Consensus 74 KD~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~l 114 (208)
T cd07995 74 KDFTDFEKALKLALERGADEIVILGATGGRLDHTLANLNLL 114 (208)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEccCCCcHHHHHHHHHHH
Confidence 35688899999999998888889999999999999998754
No 176
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.97 E-value=3.7e+02 Score=24.83 Aligned_cols=77 Identities=13% Similarity=0.049 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHc-CC---ccEEEc--cCCCHHHHHHHHHc--CCCeeeeeccccccccCh--------hhhHHHHHHH
Q 022904 83 YLDALNHLTDLKEE-GK---IKTVAL--TNFDTERLRIILEN--GIPVVSNQVQHSVVDMRP--------QQKMAELCQL 146 (290)
Q Consensus 83 ~~~~~~~l~~L~~~-G~---ir~iGv--s~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~~--------~~~~~~~~~~ 146 (290)
++++++++.....+ |. |+++=+ -|-+.+.+..+.+. +.+..++-++||+..... -..+.+..++
T Consensus 240 l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~ 319 (354)
T PRK14460 240 LDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRTKCKLNLIVYNPAEGLPYSAPTEERILAFEKYLWS 319 (354)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 67788888765443 22 333322 25566777777665 566788899999864321 1235667778
Q ss_pred hCCeEEecccccc
Q 022904 147 TGVKLITYGTVMG 159 (290)
Q Consensus 147 ~gi~via~spl~~ 159 (290)
+|+.+..+...+.
T Consensus 320 ~Gi~vtir~~~G~ 332 (354)
T PRK14460 320 KGITAIIRKSKGQ 332 (354)
T ss_pred CCCeEEEeCCCCC
Confidence 8999988776654
No 177
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=34.84 E-value=2.1e+02 Score=27.38 Aligned_cols=101 Identities=17% Similarity=0.159 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEEecC--CC--CCccHHHHHHHHHHHHHc-CCccE---------EEccCCCHHHH
Q 022904 47 MTSSIVRESIDVSRRRMDVPCLDMLQFHWW--DY--SNPGYLDALNHLTDLKEE-GKIKT---------VALTNFDTERL 112 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p--~~--~~~~~~~~~~~l~~L~~~-G~ir~---------iGvs~~~~~~l 112 (290)
++.+...+ +-+.|.++|++.|.+. +.. +. ... .+.-|+.+..+++. ..++. +|.+++..+.+
T Consensus 23 ~~t~dkl~-ia~~Ld~~Gv~~IE~~--ggatf~~~~~f~-~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv 98 (448)
T PRK12331 23 MTTEEMLP-ILEKLDNAGYHSLEMW--GGATFDACLRFL-NEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVV 98 (448)
T ss_pred cCHHHHHH-HHHHHHHcCCCEEEec--CCccchhhhccC-CCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhH
Confidence 45555554 4455889999999883 110 10 000 12356677777665 22432 45655544433
Q ss_pred ----HHHHHcCCCeeeeeccccccccChhhhHHHHHHHhCCeEEe
Q 022904 113 ----RIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 113 ----~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
+.+.+.+ ++++.+...+.+...-...+++++++|..+.+
T Consensus 99 ~~~v~~A~~~G--vd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 99 ESFVQKSVENG--IDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHHHHCC--CCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 4444434 44444444443333345689999999976643
No 178
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=34.76 E-value=47 Score=31.79 Aligned_cols=29 Identities=21% Similarity=0.428 Sum_probs=23.4
Q ss_pred HHHHcCCChHHHHHHHHHhCC-Ccceeeec
Q 022904 211 IASKHGVSIPVVAVRYILDQP-AVAGSMIG 239 (290)
Q Consensus 211 la~~~g~s~~~~al~~~l~~~-~v~~~i~g 239 (290)
+|..||.|.+.-.|+|+++.. --+++++|
T Consensus 112 VaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 112 VAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred EeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 456789999999999999997 45666777
No 179
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=34.37 E-value=95 Score=29.40 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEecC----------CC-CCccHH---HHHHHHH-HHHHcCCccEEEccCCCH
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWW----------DY-SNPGYL---DALNHLT-DLKEEGKIKTVALTNFDT 109 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p----------~~-~~~~~~---~~~~~l~-~L~~~G~ir~iGvs~~~~ 109 (290)
+.+.+.+.+++.+ .|+.|+|.+|.+-.- .. ..++.+ +.++... .|.+.|- +.+|+|||..
T Consensus 202 T~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 202 TLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 6788888888888 688999999988642 11 122222 3444443 4556666 8999999976
No 180
>PRK08609 hypothetical protein; Provisional
Probab=34.36 E-value=4.2e+02 Score=26.23 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=7.8
Q ss_pred hHHHHHHHhCCeEE
Q 022904 139 KMAELCQLTGVKLI 152 (290)
Q Consensus 139 ~~~~~~~~~gi~vi 152 (290)
.+++.|+++|+.+-
T Consensus 483 ~i~~~a~~~G~~lE 496 (570)
T PRK08609 483 QLIELAKETNTALE 496 (570)
T ss_pred HHHHHHHHhCCEEE
Confidence 45555555565554
No 181
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=34.34 E-value=2.9e+02 Score=24.51 Aligned_cols=102 Identities=11% Similarity=0.185 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCC------c--cHHHHHHHHHHHH-HcCCccEEEccCCC--------
Q 022904 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN------P--GYLDALNHLTDLK-EEGKIKTVALTNFD-------- 108 (290)
Q Consensus 46 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~------~--~~~~~~~~l~~L~-~~G~ir~iGvs~~~-------- 108 (290)
+.++..+...+.. +..+|++ .++.|-.-.+.. + ++....+-++.++ +.|..-.+|+..+.
T Consensus 81 d~n~~~l~~~L~~-~~~~Gi~--niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~~~~~i~va~~P~~hp~~~~ 157 (287)
T PF02219_consen 81 DRNREALQSDLLG-AHALGIR--NILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQEYGDDFSIGVAGYPEGHPEAPD 157 (287)
T ss_dssp TSBHHHHHHHHHH-HHHTT----EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHHHHGGGSEEEEEE-TTHHTTCSS
T ss_pred CCCHHHHHHHHHH-HHHcCCC--eEEEecCCCCCCCccccCCCchhHHHHHHHHHHHHhcCcccccccccCCCCCccccC
Confidence 3466777777776 4688876 556665421111 0 0112344444555 34555578877543
Q ss_pred -HHHHHHHHHc---CCCeeeeeccccccccChhhhHHHHHHHhCC--eEEe
Q 022904 109 -TERLRIILEN---GIPVVSNQVQHSVVDMRPQQKMAELCQLTGV--KLIT 153 (290)
Q Consensus 109 -~~~l~~~~~~---~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi--~via 153 (290)
..++..+.+. |..+.+.|.-|++ ... ..+++.|++.|+ .|++
T Consensus 158 ~~~~~~~l~~Ki~aGA~f~iTQ~~fd~--~~~-~~~~~~~~~~g~~~pIi~ 205 (287)
T PF02219_consen 158 FEAELKRLKKKIDAGADFIITQPFFDA--EAF-ERFLDRLREAGIDVPIIP 205 (287)
T ss_dssp HHHHHHHHHHHHHTTESEEEEEE-SSH--HHH-HHHHHHHHHTTHTSEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEeccccCCH--HHH-HHHHHHHHHcCCCCcEEE
Confidence 2234444443 6678889999987 332 478999999987 5553
No 182
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=34.05 E-value=2.6e+02 Score=25.40 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeeeecccccccc-ChhhhHHHHHHHhCCeEEecc
Q 022904 86 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 86 ~~~~l~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~s 155 (290)
-++.+.+|++...|. ..|=+.++...+..+++. ..++++|+..+-.-. ..-..+...|+.+|+.++.++
T Consensus 210 d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~-~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 210 DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEG-RAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHc-CCCCEEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 455666777776665 556667788888888874 347777877654321 224578999999999988764
No 183
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=33.99 E-value=90 Score=24.07 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=33.1
Q ss_pred CCChHHHHHHHHHhCCCcceeeecCCCCCHhHHHHhHhhh
Q 022904 216 GVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 255 (290)
Q Consensus 216 g~s~~~~al~~~l~~~~v~~~i~g~~~~~~~~l~enl~a~ 255 (290)
..|-.+.||.++...+.-..++.|+..+..+|.-.|+..+
T Consensus 69 D~TD~e~Al~~~~~~~~~~i~v~Ga~GgR~DH~lanl~~l 108 (123)
T PF04263_consen 69 DYTDLEKALEYAIEQGPDEIIVLGALGGRFDHTLANLNLL 108 (123)
T ss_dssp TS-HHHHHHHHHHHTTTSEEEEES-SSSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHHHHH
Confidence 5578899999999998888889999999999999988654
No 184
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=33.79 E-value=1.9e+02 Score=27.17 Aligned_cols=77 Identities=12% Similarity=0.064 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeeeeccccccccCh-hhhHHHHHHHhCCeEEeccccccc
Q 022904 84 LDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 84 ~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~via~spl~~G 160 (290)
...+..+..+.+.+.++.+-+...+.+.+++++..+.+..++..+-|+.-.-. -.++.+.|+++|+.++.=.+++.+
T Consensus 110 ~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~ 187 (405)
T PRK08776 110 GGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP 187 (405)
T ss_pred hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 45555566655555566666665577777777643456667777777754332 356899999999999976666544
No 185
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=33.67 E-value=2.1e+02 Score=24.90 Aligned_cols=19 Identities=16% Similarity=0.518 Sum_probs=13.8
Q ss_pred hhHHHHHHHhCCeEEecccc
Q 022904 138 QKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 138 ~~~~~~~~~~gi~via~spl 157 (290)
.++.++|+++||.+++ +||
T Consensus 59 ~~L~~~~~~~gi~f~s-tpf 77 (241)
T PF03102_consen 59 KELFEYCKELGIDFFS-TPF 77 (241)
T ss_dssp HHHHHHHHHTT-EEEE-EE-
T ss_pred HHHHHHHHHcCCEEEE-CCC
Confidence 5789999999998887 345
No 186
>PLN02444 HMP-P synthase
Probab=33.63 E-value=2.6e+02 Score=27.68 Aligned_cols=91 Identities=13% Similarity=0.131 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc----CCCeeeeeccccccccChhhhHHHHHHHhCCeEEeccccccc
Q 022904 85 DALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 85 ~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~----~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G 160 (290)
.+++++++.. | .+...+++.+...++. |++|..+....+ .+.++..+.+=++++.++ |.
T Consensus 282 PIYqA~~~~~--~-----~~~~lt~d~~~d~ieeQaeqGVDfmTIH~Gv~-------~~~v~~~~~R~tgIVSRG---GS 344 (642)
T PLN02444 282 PIYQALEKVD--G-----IAENLTWEVFRETLIEQAEQGVDYFTIHAGVL-------LRYIPLTAKRMTGIVSRG---GS 344 (642)
T ss_pred cHHHHHHHhc--C-----ChhhCCHHHHHHHHHHHHHhCCCEEEEChhhH-------HHHHHHHhCcccCceeCC---cH
Confidence 5666666554 2 4556777777766665 666665555554 356676666556666642 22
Q ss_pred cccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcCCC
Q 022904 161 LLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVS 218 (290)
Q Consensus 161 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s 218 (290)
++.+ .+-.-..++.+-..++.+.+|+++|+++
T Consensus 345 i~a~--------------------------Wml~~~kENPlYe~FD~ileI~k~YDVt 376 (642)
T PLN02444 345 IHAK--------------------------WCLAYHKENFAYEHWDDILDICNQYDIA 376 (642)
T ss_pred HHHH--------------------------HHHHcCCcCchHHHHHHHHHHHHHhCee
Confidence 2211 0111112233444478999999999875
No 187
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=33.30 E-value=2.5e+02 Score=25.84 Aligned_cols=100 Identities=8% Similarity=-0.027 Sum_probs=0.0
Q ss_pred HHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeeeecccccc
Q 022904 54 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVV 132 (290)
Q Consensus 54 ~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~ 132 (290)
+...+.++.| +.+++.++-.|-...+ ++.+.+|++...+. ..|=+-++...+..+++ ...++++|+...-.
T Consensus 201 ~~A~~~~~~l--~~~~~~~iEeP~~~~d-----~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~-~~~~d~~~~d~~~~ 272 (368)
T TIGR02534 201 RTALHYLPQL--ADAGVELIEQPTPAEN-----REALARLTRRFNVPIMADESVTGPADALAIAK-ASAADVFALKTTKS 272 (368)
T ss_pred HHHHHHHHHH--HhcChhheECCCCccc-----HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHH-hCCCCEEEEccccc
Q ss_pred ccCh-hhhHHHHHHHhCCeEEecccccccc
Q 022904 133 DMRP-QQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 133 ~~~~-~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
-.-. -..+...|+.+|+.++..+.+.+|+
T Consensus 273 GGi~~~~~i~~lA~~~gi~~~~~~~~~s~i 302 (368)
T TIGR02534 273 GGLLESKKIAAIAEAAGIALYGGTMLEGPI 302 (368)
T ss_pred CCHHHHHHHHHHHHHcCCceeeecchhhHH
No 188
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=32.69 E-value=2.4e+02 Score=26.38 Aligned_cols=94 Identities=11% Similarity=0.045 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeeee
Q 022904 47 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQ 126 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q 126 (290)
++.+.+++.+++-.+.|. .+.+++---.++ ...+ +..|.+.| .|+...+...++.+++.+++++ .
T Consensus 18 ~d~~~i~~~~~~l~~~lp--~~~~~YAvKaN~----~~~i---l~~l~~~G----~g~DvaS~gEl~~al~~G~~~~--~ 82 (394)
T cd06831 18 GDLGKIVKKHSQWQTVMA--QIKPFYTVRCNS----TPAV---LEILAALG----TGFACSSKNEMALVQELGVSPE--N 82 (394)
T ss_pred EEHHHHHHHHHHHHHHCC--CCeEEeeeccCC----CHHH---HHHHHHcC----CCeEeCCHHHHHHHHhcCCCcC--C
Confidence 367889999999888885 455544333222 2333 34445677 4666667888888887665544 5
Q ss_pred ccccccccChhhhHHHHHHHhCCeEEecccc
Q 022904 127 VQHSVVDMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 127 ~~~n~~~~~~~~~~~~~~~~~gi~via~spl 157 (290)
+.|+- .....+.+++|.++||..+....+
T Consensus 83 Iif~g--p~K~~~~l~~a~~~Gv~~i~vDS~ 111 (394)
T cd06831 83 IIYTN--PCKQASQIKYAAKVGVNIMTCDNE 111 (394)
T ss_pred EEEeC--CCCCHHHHHHHHHCCCCEEEECCH
Confidence 66654 222346788888999876554333
No 189
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=32.54 E-value=1.8e+02 Score=20.64 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=23.3
Q ss_pred chhHHHHHHHHHHHHHHcCCChHHHHHHH
Q 022904 198 WSQFQVLLQTLKRIASKHGVSIPVVAVRY 226 (290)
Q Consensus 198 ~~~~~~~~~~l~~la~~~g~s~~~~al~~ 226 (290)
++...+-+..|.+||++.|++..+++.-.
T Consensus 47 P~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 47 PEKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 45566668899999999999999987543
No 190
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=32.15 E-value=2.1e+02 Score=27.36 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=46.8
Q ss_pred HHHHHHHcCCccEEEccCCCHHHHHHHHHc------CCC-eeeeeccccccccChhhhHHHHHHHhCCeEEecc
Q 022904 89 HLTDLKEEGKIKTVALTNFDTERLRIILEN------GIP-VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 89 ~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~------~~~-~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 155 (290)
....+-+.|-..++|....+++++++.+.. +.+ |-+|-+ .++-+...+..+++.|.++|+.++..+
T Consensus 35 LVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 35 LVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALEWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred HHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccHHHHHHHHHHcCCCEEEec
Confidence 344667789999999999999998887765 224 666554 233223334578999999999988655
No 191
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=32.11 E-value=2.6e+02 Score=24.01 Aligned_cols=91 Identities=16% Similarity=0.117 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeeeeccc
Q 022904 50 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQH 129 (290)
Q Consensus 50 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~ 129 (290)
+.+++.+.+.++...-.-+.+++---.+ .....|+.+.+.| +|+...+...+..++..+++++ ++.|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~yA~KaN-------~~~~vl~~l~~~g----~g~dv~S~~El~~a~~~g~~~~--~Ii~ 69 (251)
T PF02784_consen 3 DRIIERIRAAWKAFLPYNVKIFYAVKAN-------PNPAVLKILAEEG----CGFDVASPGELELALKAGFPPD--RIIF 69 (251)
T ss_dssp HHHHHHHHHHHHHHTTT-EEEEEEGGGS---------HHHHHHHHHTT----CEEEESSHHHHHHHHHTTTTGG--GEEE
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECcC-------CCHHHHHHHHHcC----CceEEecccchHHHHhhhcccc--ceeE
Confidence 4566677777766654324555544322 2344566777888 4888888999999988665554 5555
Q ss_pred cccccChhhhHHHHHHHhCCeEEecc
Q 022904 130 SVVDMRPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 130 n~~~~~~~~~~~~~~~~~gi~via~s 155 (290)
+- .....+.++.|.++|+..+...
T Consensus 70 ~g--p~k~~~~l~~a~~~~~~~i~vD 93 (251)
T PF02784_consen 70 TG--PGKSDEELEEAIENGVATINVD 93 (251)
T ss_dssp EC--SS--HHHHHHHHHHTESEEEES
T ss_pred ec--CcccHHHHHHHHhCCceEEEeC
Confidence 54 3334567888888777766543
No 192
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=31.98 E-value=2.7e+02 Score=24.99 Aligned_cols=80 Identities=10% Similarity=-0.100 Sum_probs=49.4
Q ss_pred hHHhhhchHHHhhhCCCCcEEEEeccCCC----CCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHH
Q 022904 15 KISMASSSIEFVERGHQSSWISLTKWVPP----PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHL 90 (290)
Q Consensus 15 E~~lG~~~~~~~~~~~R~~~~i~tK~~~~----~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l 90 (290)
+..+..-|+.+...+ -+++|+.=-+.. ....+++.+.+++.+-+..-+.|.||+=+=+....+.........+|
T Consensus 53 ~~~~~~~i~~lk~~G--~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al 130 (294)
T cd06543 53 GGWIKSDIAALRAAG--GDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQAL 130 (294)
T ss_pred chhHHHHHHHHHHcC--CeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHH
Confidence 344444455554334 355554322211 12347899999999999999999999966554322222246677788
Q ss_pred HHHHHc
Q 022904 91 TDLKEE 96 (290)
Q Consensus 91 ~~L~~~ 96 (290)
..|+++
T Consensus 131 ~~Lq~~ 136 (294)
T cd06543 131 ALLQKE 136 (294)
T ss_pred HHHHHH
Confidence 888775
No 193
>PRK02399 hypothetical protein; Provisional
Probab=31.64 E-value=1.7e+02 Score=27.65 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccE
Q 022904 52 VRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKT 101 (290)
Q Consensus 52 i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~ 101 (290)
....+.+-|+..| .|.+-+|.--. -=++||+|.++|.+..
T Consensus 200 ~v~~~~~~Le~~G---yEvlVFHATG~-------GGraME~Li~~G~~~g 239 (406)
T PRK02399 200 CVQAAREELEARG---YEVLVFHATGT-------GGRAMEKLIDSGLIAG 239 (406)
T ss_pred HHHHHHHHHHhCC---CeEEEEcCCCC-------chHHHHHHHHcCCceE
Confidence 3444445555554 79999997322 2358999999999854
No 194
>smart00642 Aamy Alpha-amylase domain.
Probab=31.44 E-value=61 Score=26.34 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=16.8
Q ss_pred hhHHHHHHHhCCeEEecccc
Q 022904 138 QKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 138 ~~~~~~~~~~gi~via~spl 157 (290)
+.+++.||++||.|+.=-++
T Consensus 73 ~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 73 KELVDAAHARGIKVILDVVI 92 (166)
T ss_pred HHHHHHHHHCCCEEEEEECC
Confidence 57999999999999975555
No 195
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=31.37 E-value=1.4e+02 Score=22.36 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=33.0
Q ss_pred ccCCCHHHHHHHHHcCCCeeeeeccccccccChhhhHHHHHHHhCCeEEecccc
Q 022904 104 LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 104 vs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 157 (290)
.+..+++.+..+.... +++++-+.-..-.+....++.++++++||++..+.+-
T Consensus 36 ~~~l~~~~l~~~~~~~-~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 36 LSDLDPEALLPLLAED-RPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred cccCCHHHHHHHHhhC-CCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 4456677777777643 2443333322222344567899999999999988654
No 196
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=31.24 E-value=98 Score=23.52 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=34.3
Q ss_pred HHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEcc
Q 022904 53 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT 105 (290)
Q Consensus 53 ~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs 105 (290)
+..+.+.|+.+....+|.+++..++.-.....+....++.|...| |+-+-++
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g-i~l~~~~ 102 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG-VRVVTAD 102 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC-CEEEEec
Confidence 455555555555567888888888776665567777777777665 5554444
No 197
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=31.16 E-value=3e+02 Score=26.16 Aligned_cols=101 Identities=14% Similarity=0.214 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCC-ccEEEccCCCHHHH---HHHHHcCCCeee-
Q 022904 50 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERL---RIILENGIPVVS- 124 (290)
Q Consensus 50 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~-ir~iGvs~~~~~~l---~~~~~~~~~~~~- 124 (290)
.-+.+++-..... +++. -++.+|.- ..-+....+.|+++|. ++++.|.+-....+ +++++.....+.
T Consensus 116 Nlvl~~v~~~~~~-~~~k-~iitl~~e------H~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I 187 (428)
T KOG1549|consen 116 NLVLKGVARFFGD-KTKK-HIITLQTE------HPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSI 187 (428)
T ss_pred HHHHHHhhccccc-cccc-eEEEeccc------CcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEE
Confidence 4444455444444 4443 45555531 2356667778888883 45677775444444 444443333222
Q ss_pred eeccccccccChhhhHHHHHHHhCCeEEeccccc
Q 022904 125 NQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVM 158 (290)
Q Consensus 125 ~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~ 158 (290)
.-+...+..-.+-+++...|++.||.|+.=...+
T Consensus 188 ~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQa 221 (428)
T KOG1549|consen 188 MHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQA 221 (428)
T ss_pred EecccCccccccHHHHHHHhCcCCcEEEeehhhh
Confidence 2222223334455789999999988777644444
No 198
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=31.14 E-value=2.9e+02 Score=25.86 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeeeecccccccc-ChhhhHHHHHHHhCCeEEecccc
Q 022904 87 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 87 ~~~l~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl 157 (290)
++.+.+|++...+- ..|-|-++.+++..+++.+ -++++|......-. ..-.++.+.|+.+|+.++.++..
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~-avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQLN-AVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcC-CCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 45556666665444 4555566777777777743 37777776653211 12357899999999999988754
No 199
>TIGR00035 asp_race aspartate racemase.
Probab=31.12 E-value=3.3e+02 Score=23.12 Aligned_cols=69 Identities=10% Similarity=0.085 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEecCCCC-----------CccHHHHHHHHHHHHHcCCccEEEccCCCHHH-HHHH
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-----------NPGYLDALNHLTDLKEEGKIKTVALTNFDTER-LRII 115 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~-----------~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~-l~~~ 115 (290)
+.+..++=++..-.+.+-++++.+.+++|+.. ......+.+.++.|.+.| +.+|-++-.+... ++++
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~~~~l 93 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKFAEDI 93 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHHHHHH
Confidence 45667777777777888899999999998421 111356777777777654 7888887666555 4444
Q ss_pred HH
Q 022904 116 LE 117 (290)
Q Consensus 116 ~~ 117 (290)
.+
T Consensus 94 ~~ 95 (229)
T TIGR00035 94 QK 95 (229)
T ss_pred HH
Confidence 33
No 200
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=30.90 E-value=2.9e+02 Score=22.42 Aligned_cols=75 Identities=15% Similarity=0.032 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeeeecccccccc-----ChhhhHHHHHHHhCCeEEeccc
Q 022904 83 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDM-----RPQQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 83 ~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~-----~~~~~~~~~~~~~gi~via~sp 156 (290)
.+++++..-+=-++.-|++|=|.+.+......+.+. .....++-+.|+.-.. ..+.++-+..+++|..+..-|-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sH 91 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSH 91 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehh
Confidence 367777666666677899998877666666666665 1223333334433222 2356889999999999987554
Q ss_pred c
Q 022904 157 V 157 (290)
Q Consensus 157 l 157 (290)
.
T Consensus 92 a 92 (186)
T COG1751 92 A 92 (186)
T ss_pred h
Confidence 3
No 201
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=30.86 E-value=4e+02 Score=24.03 Aligned_cols=167 Identities=11% Similarity=0.144 Sum_probs=89.8
Q ss_pred HHHhhhCCCcccEEEEecC--------CCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeeeecc
Q 022904 58 VSRRRMDVPCLDMLQFHWW--------DYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQ 128 (290)
Q Consensus 58 ~SL~~Lg~d~iDl~~lH~p--------~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~ 128 (290)
+.+.+||+.++=|-.-+.. .......+.-.+.++++-+.|.| |-+|..+...+..+++. ..|+.+-...
T Consensus 120 ~~~~~lGvR~i~Lt~n~~N~~a~g~~~~~~~GLt~~G~~vv~~mn~lGmi--iDvSH~s~~~~~dv~~~s~~PviaSHsn 197 (309)
T cd01301 120 RLLYRLGVRYLGLTWNGDNKFADGCGEKRGGGLTPFGKELVREMNRLGII--IDLSHLSERTFWDVLDISNAPVIASHSN 197 (309)
T ss_pred HHHHHcCCeEEEeeecCCCccccCCCCCCCCCCCHHHHHHHHHHHHcCCE--EEcCCCCHHHHHHHHHhcCCCEEEeccC
Confidence 4566778877655532211 01112135666777788888987 77888888888888876 4565554444
Q ss_pred ccccc---cChhhhHHHHHHHhC--CeEEeccccccccccccccCCCCCCCCCCCCCCCcchhHhhhhhhccCCchhHHH
Q 022904 129 HSVVD---MRPQQKMAELCQLTG--VKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQV 203 (290)
Q Consensus 129 ~n~~~---~~~~~~~~~~~~~~g--i~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
...+. |+...+.+..+.++| |++..+..+... . +. .-+.+
T Consensus 198 ~ral~~h~RNltD~~i~~ia~~GGvigi~~~~~fl~~----~------~~-------------------------~~~~~ 242 (309)
T cd01301 198 ARALCDHPRNLTDAQLKAIAETGGVIGVNFYPAFLSP----G------AD-------------------------ATLDD 242 (309)
T ss_pred hHHhcCCCCCCCHHHHHHHHHcCCEEEEeeeHHHhCC----C------CC-------------------------CCHHH
Confidence 33322 233456667777666 455455444221 0 00 01233
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhCCCcceeeecCCCCCHhHHHHhHhhhcC-CCCHHHHHHH
Q 022904 204 LLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML-SLDEDDVNSI 267 (290)
Q Consensus 204 ~~~~l~~la~~~g~s~~~~al~~~l~~~~v~~~i~g~~~~~~~~l~enl~a~~~-~Lt~e~~~~l 267 (290)
+++-+.-+++..|..-.-+.--| .+......|.. +++++...++++.. -+++++++.|
T Consensus 243 ~~~hi~~i~~l~G~dhVgiGsDf----dg~~~~~~gl~--~~~~~~~l~~~L~~rG~s~~~i~~i 301 (309)
T cd01301 243 VVRHIDYIVDLIGIDHVGLGSDF----DGIGGTPGGLE--DVSDLPNLTAELLERGYSEEEIEKI 301 (309)
T ss_pred HHHHHHHHHHhcCCCeEEECccc----CCCCCCccccC--CHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 34445555544443211111111 11112234566 78888888877744 6999888776
No 202
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=30.30 E-value=1.2e+02 Score=17.67 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHH
Q 022904 204 LLQTLKRIASKHGVSIPVVAVR 225 (290)
Q Consensus 204 ~~~~l~~la~~~g~s~~~~al~ 225 (290)
..+.|.++|++.|+|.+++.-.
T Consensus 10 ~~~~l~~~a~~~g~s~s~~ir~ 31 (39)
T PF01402_consen 10 LYERLDELAKELGRSRSELIRE 31 (39)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHH
Confidence 3488999999999998886443
No 203
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.07 E-value=6.1e+02 Score=25.88 Aligned_cols=66 Identities=12% Similarity=0.017 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHc--CCccEEEccCCCHHHHHHHH
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKIKTVALTNFDTERLRIIL 116 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~--G~ir~iGvs~~~~~~l~~~~ 116 (290)
..+.+++-+++....-.....-+|+|+..+.-. ....++|.+..++ +.+.+|.+++.....+..+.
T Consensus 105 gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls---~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIr 172 (700)
T PRK12323 105 GVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT---NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL 172 (700)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEEChHhcC---HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHH
Confidence 456677666655544334466789988865533 3566777777766 88999999986544444443
No 204
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=30.05 E-value=1.5e+02 Score=22.91 Aligned_cols=51 Identities=20% Similarity=0.217 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEc
Q 022904 53 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVAL 104 (290)
Q Consensus 53 ~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGv 104 (290)
+..+.+.|+.+....+|.+++...+.-.....+....++.|.+.| |+-+-+
T Consensus 51 Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~~~~~~~~~~l~~~g-i~l~~~ 101 (148)
T smart00857 51 RPGLQRLLADLRAGDIDVLVVYKLDRLGRSLRDLLALLELLEKKG-VRLVSV 101 (148)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhhCcHHHHHHHHHHHHHCC-CEEEEC
Confidence 344555555555455677777777666554556666667777666 444443
No 205
>PRK15063 isocitrate lyase; Provisional
Probab=29.84 E-value=1.9e+02 Score=27.51 Aligned_cols=77 Identities=9% Similarity=0.067 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHH--cCCccEEEccC-------CCHHHHHHHHHc--C
Q 022904 51 IVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE--EGKIKTVALTN-------FDTERLRIILEN--G 119 (290)
Q Consensus 51 ~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~--~G~ir~iGvs~-------~~~~~l~~~~~~--~ 119 (290)
.+..+|++.+.=.. +-|+++++... ++.+++....+.+.. -+++-.+|.|. ++.+++..+.+. .
T Consensus 263 Gld~AI~Ra~AYa~--GAD~iw~Et~~---~d~ee~~~fa~~v~~~~P~~~layn~sPsfnW~~~~~~~~~~~f~~eL~~ 337 (428)
T PRK15063 263 GIEQAIARGLAYAP--YADLIWCETST---PDLEEARRFAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGA 337 (428)
T ss_pred CHHHHHHHHHHHhc--CCCEEEeCCCC---CCHHHHHHHHHhhcccCccceeecCCCCCcccccccCHHHHHHHHHHHHH
Confidence 47778888775544 89999999532 224555555556655 56677777662 345555555443 2
Q ss_pred CCeeeeecccccc
Q 022904 120 IPVVSNQVQHSVV 132 (290)
Q Consensus 120 ~~~~~~q~~~n~~ 132 (290)
..+.+.-+.+..+
T Consensus 338 ~Gy~~~~~~la~~ 350 (428)
T PRK15063 338 MGYKFQFITLAGF 350 (428)
T ss_pred cCceEEEechHHH
Confidence 2344434444443
No 206
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=29.81 E-value=1.1e+02 Score=27.22 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=56.7
Q ss_pred HhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccC---CCHHHHHHHHHc----CCCeeeeecccccc
Q 022904 60 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---FDTERLRIILEN----GIPVVSNQVQHSVV 132 (290)
Q Consensus 60 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~---~~~~~l~~~~~~----~~~~~~~q~~~n~~ 132 (290)
+++..-+..|+..+..|....= ..+..++..-.+ |=|+. ++...+..+++. ++++.++-..||+.
T Consensus 156 ~kk~a~E~~~~~IIDsaaG~gC------pVi~sl~~aD~a--i~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g 227 (284)
T COG1149 156 LKKHAKELADLLIIDSAAGTGC------PVIASLKGADLA--ILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLG 227 (284)
T ss_pred HHHhhhhhcceeEEecCCCCCC------hHHHhhccCCEE--EEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCC
Confidence 3333333379999998754332 233344444443 44442 344455555544 88888888888763
Q ss_pred ccChhhhHHHHHHHhCCeEEeccccccc
Q 022904 133 DMRPQQKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 133 ~~~~~~~~~~~~~~~gi~via~spl~~G 160 (290)
+ .++-++|.+.|+.+++.-|+..-
T Consensus 228 ~----s~ie~~~~e~gi~il~~IPyd~~ 251 (284)
T COG1149 228 D----SEIEEYCEEEGIPILGEIPYDKD 251 (284)
T ss_pred c----hHHHHHHHHcCCCeeEECCcchh
Confidence 2 27889999999999999888653
No 207
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=29.72 E-value=77 Score=19.83 Aligned_cols=21 Identities=10% Similarity=-0.018 Sum_probs=15.0
Q ss_pred HHHHHHHHHcCCChHHHHHHH
Q 022904 206 QTLKRIASKHGVSIPVVAVRY 226 (290)
Q Consensus 206 ~~l~~la~~~g~s~~~~al~~ 226 (290)
+.++.+.++.|++..++|-+-
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~ 25 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLA 25 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHh
Confidence 566777777888888777543
No 208
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=29.64 E-value=4.1e+02 Score=23.71 Aligned_cols=109 Identities=12% Similarity=-0.029 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHhhh---CCCcccEEEEecCCCC--Cc---cHHHHHHHHHHHHHcCCccE-EEc---cCCCHHHHHH
Q 022904 47 MTSSIVRESIDVSRRRM---DVPCLDMLQFHWWDYS--NP---GYLDALNHLTDLKEEGKIKT-VAL---TNFDTERLRI 114 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~L---g~d~iDl~~lH~p~~~--~~---~~~~~~~~l~~L~~~G~ir~-iGv---s~~~~~~l~~ 114 (290)
.+++.+.......++++ |+-|+|+.+-...... .. .++.+.+++.+.+++-.|+. +.+ .+.+++.+.+
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~ 145 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQE 145 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHH
Confidence 46788888888887777 8889997643221111 11 12345667777766644443 222 2344555555
Q ss_pred HHHc--CCCe-eeeeccccccc--c--ChhhhHHHHHHHhCCeEEecc
Q 022904 115 ILEN--GIPV-VSNQVQHSVVD--M--RPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 115 ~~~~--~~~~-~~~q~~~n~~~--~--~~~~~~~~~~~~~gi~via~s 155 (290)
.++. ..+- .++-+.+..-. . ..-..+++.|+++|+.+..+.
T Consensus 146 ~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~ 193 (325)
T cd01320 146 TLELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHA 193 (325)
T ss_pred HHHHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeC
Confidence 5542 1111 12233322111 1 112478999999999998874
No 209
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=29.47 E-value=3.9e+02 Score=26.13 Aligned_cols=110 Identities=10% Similarity=0.110 Sum_probs=65.8
Q ss_pred ccccCCChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCC-CcccEEEEecCCCCCccH-
Q 022904 6 VFTYGMGLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDV-PCLDMLQFHWWDYSNPGY- 83 (290)
Q Consensus 6 a~~Yg~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~-d~iDl~~lH~p~~~~~~~- 83 (290)
+.+|| .++-|-++|++..+..+.+=|+|+|-+.+. .-.+++..-+.+..+.... +-+++..+|.|.......
T Consensus 121 ~aVfG---G~~~L~e~I~~~~~~y~P~~I~V~tTC~~e---vIGDDi~a~i~~~~~~~~~p~~~pVi~v~TpgF~Gs~~~ 194 (515)
T TIGR01286 121 AAVFG---GLKNMVDGLQNCYALYKPKMIAVSTTCMAE---VIGDDLNAFIGNAKKEGFIPDDFPVPFAHTPSFVGSHIT 194 (515)
T ss_pred ceeeC---cHHHHHHHHHHHHHhcCCCEEEEeCCcHHH---HhhccHHHHHHHHHHhcCCCCCCceEEeeCCCCcccHHH
Confidence 44566 456777788888776677778888887653 2336666666666666543 246899999997765432
Q ss_pred --HHHHHHHHH-HHH----------cCCccEEE-ccCC--CHHHHHHHHHc-CCC
Q 022904 84 --LDALNHLTD-LKE----------EGKIKTVA-LTNF--DTERLRIILEN-GIP 121 (290)
Q Consensus 84 --~~~~~~l~~-L~~----------~G~ir~iG-vs~~--~~~~l~~~~~~-~~~ 121 (290)
+.++.++-+ +.+ .++|--|| +..+ +.+.+.++++. +++
T Consensus 195 Gyd~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~~gd~~eikrlL~~~Gi~ 249 (515)
T TIGR01286 195 GYDNMFKGILEYFTKGSMDDKVVGSNGKINIIPGFETYIGNFREIKRILSLMGVG 249 (515)
T ss_pred HHHHHHHHHHHHHhhcccccccCCCCCeEEEECCCCCCchhHHHHHHHHHHcCCC
Confidence 233333332 221 25677774 4333 34566666664 443
No 210
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.20 E-value=4.7e+02 Score=24.25 Aligned_cols=77 Identities=12% Similarity=0.140 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHH-HcCC---ccEEEcc--CCCHHHHHHHHHc--CCCeeeeeccccccccC----hh----hhHHHHHHH
Q 022904 83 YLDALNHLTDLK-EEGK---IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDMR----PQ----QKMAELCQL 146 (290)
Q Consensus 83 ~~~~~~~l~~L~-~~G~---ir~iGvs--~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~----~~----~~~~~~~~~ 146 (290)
++++++++..+. +.|+ |+|+=+. |-+.+.+.++.+. +.+..++-++||+.... +. ..+.+..++
T Consensus 246 l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~~~~~~ps~e~i~~f~~~l~~ 325 (356)
T PRK14462 246 IESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEGSKFERPSLEDMIKFQDYLNS 325 (356)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 467888887555 4444 3344333 5567777777765 66788999999986531 21 235556777
Q ss_pred hCCeEEecccccc
Q 022904 147 TGVKLITYGTVMG 159 (290)
Q Consensus 147 ~gi~via~spl~~ 159 (290)
+||.+..+...+.
T Consensus 326 ~gi~vtvR~~~G~ 338 (356)
T PRK14462 326 KGLLCTIRESKGL 338 (356)
T ss_pred CCCcEEEeCCCCC
Confidence 8999998876654
No 211
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=29.10 E-value=4.6e+02 Score=24.15 Aligned_cols=93 Identities=12% Similarity=0.076 Sum_probs=57.4
Q ss_pred cccEEE-EecCCCC----------CccHHHHHHHHHHHHH-cCC---ccEEEcc--CCCHHHHHHHHHc--CC-----Ce
Q 022904 67 CLDMLQ-FHWWDYS----------NPGYLDALNHLTDLKE-EGK---IKTVALT--NFDTERLRIILEN--GI-----PV 122 (290)
Q Consensus 67 ~iDl~~-lH~p~~~----------~~~~~~~~~~l~~L~~-~G~---ir~iGvs--~~~~~~l~~~~~~--~~-----~~ 122 (290)
++||.+ ||.++.. ...++++++++.+..+ .|. |+++=+. |.+.+.+..+.+. +. ..
T Consensus 204 ~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~ 283 (347)
T PRK14453 204 QVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLY 283 (347)
T ss_pred CcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCcc
Confidence 577654 7776322 1225677777666555 342 2233222 5566677777665 33 46
Q ss_pred eeeeccccccccC------h----hhhHHHHHHHhCCeEEecccccc
Q 022904 123 VSNQVQHSVVDMR------P----QQKMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 123 ~~~q~~~n~~~~~------~----~~~~~~~~~~~gi~via~spl~~ 159 (290)
.++-++||++... + -..+.+..+++|+.+..+...+.
T Consensus 284 ~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 330 (347)
T PRK14453 284 HVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGS 330 (347)
T ss_pred eEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 7899999987432 1 23567788889999998776654
No 212
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=28.95 E-value=2e+02 Score=25.07 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.4
Q ss_pred hhHHHHHHHhCCeEEec
Q 022904 138 QKMAELCQLTGVKLITY 154 (290)
Q Consensus 138 ~~~~~~~~~~gi~via~ 154 (290)
+..++.|++.|+.++..
T Consensus 97 ~~~i~~a~~lG~~~v~~ 113 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQL 113 (279)
T ss_pred HHHHHHHHHhCCCEEEe
Confidence 46899999999998864
No 213
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=28.84 E-value=3.7e+02 Score=27.19 Aligned_cols=101 Identities=10% Similarity=0.139 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCC--HHHHHHHHHcCCCeeeeec
Q 022904 50 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD--TERLRIILENGIPVVSNQV 127 (290)
Q Consensus 50 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~--~~~l~~~~~~~~~~~~~q~ 127 (290)
..+...+.+.|+..+..-=-+.+--.-.........+...+..|++.|- .|++.+|+ ...+..+. ..+++++-+
T Consensus 644 ~~~~~~l~~~l~~~~~~~~~l~~ei~e~~~~~~~~~~~~~l~~l~~~G~--~i~ld~fg~~~~~~~~l~--~l~~d~iKi 719 (799)
T PRK11359 644 NQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGV--GLSVDDFGTGFSGLSRLV--SLPVTEIKI 719 (799)
T ss_pred chHHHHHHHHHHHhCcChHhEEEEEcCchhhcCHHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHh--hCCCCEEEE
Confidence 3455566666666665322222222111111225788899999999998 57777764 45555555 356776666
Q ss_pred ccccccc--------ChhhhHHHHHHHhCCeEEec
Q 022904 128 QHSVVDM--------RPQQKMAELCQLTGVKLITY 154 (290)
Q Consensus 128 ~~n~~~~--------~~~~~~~~~~~~~gi~via~ 154 (290)
.-+.+.. ..-+.++.+|++.||.+++-
T Consensus 720 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~via~ 754 (799)
T PRK11359 720 DKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAE 754 (799)
T ss_pred CHHHHhhcccChhHHHHHHHHHHHHHHCCCeEEEE
Confidence 6554322 11356899999999999984
No 214
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=28.70 E-value=2.6e+02 Score=21.14 Aligned_cols=64 Identities=11% Similarity=0.051 Sum_probs=43.2
Q ss_pred CCCcEEEEec-cCCCCCCCCHHHHHHHHHHHHhhhC--CCcccEEEEecCCCCCccHHHHHHHHHHHHHc
Q 022904 30 HQSSWISLTK-WVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 96 (290)
Q Consensus 30 ~R~~~~i~tK-~~~~~~~~~~~~i~~~~~~SL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~ 96 (290)
+|=.+.|+-| ++. ...+..+++-+.++.+.+. ....|++++-.+.....+..++...|..|.+.
T Consensus 45 ~R~G~~VsKK~~g~---AV~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~~~~~~~l~~~l~~ll~k 111 (114)
T PRK01732 45 PRLGLTVAKKNVKR---AHERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVADLDNRELFELLEKLWRR 111 (114)
T ss_pred cEEEEEEEcccCcc---hhHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 3444566666 443 2346777777777776543 23579999999877766678888888887654
No 215
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=28.55 E-value=2.4e+02 Score=26.43 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=45.4
Q ss_pred hhhHHhhhchHHHhhhCCCCcEEEEeccCC--------CCCCCCH----HHHHHHHHHHHhhhCCCcccEEEEecCCCCC
Q 022904 13 LLKISMASSSIEFVERGHQSSWISLTKWVP--------PPVKMTS----SIVRESIDVSRRRMDVPCLDMLQFHWWDYSN 80 (290)
Q Consensus 13 ~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~--------~~~~~~~----~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~ 80 (290)
.++..|...+... ...=+||-||+.. .+..++. +.|++.+.+.|++-|+....+|++-+.+...
T Consensus 128 ~ndv~La~~i~~~----gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~ 203 (376)
T PF05049_consen 128 ENDVQLAKEIQRM----GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSK 203 (376)
T ss_dssp HHHHHHHHHHHHT----T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTS
T ss_pred hhhHHHHHHHHHc----CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCccc
Confidence 4455555433322 3456788899862 2234443 5677788899999999999999999998877
Q ss_pred ccHHHHHHHHHH
Q 022904 81 PGYLDALNHLTD 92 (290)
Q Consensus 81 ~~~~~~~~~l~~ 92 (290)
-++....+.|+.
T Consensus 204 yDFp~L~~tL~~ 215 (376)
T PF05049_consen 204 YDFPKLEETLEK 215 (376)
T ss_dssp TTHHHHHHHHHH
T ss_pred CChHHHHHHHHH
Confidence 667777776664
No 216
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=28.37 E-value=5e+02 Score=24.34 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=61.4
Q ss_pred hHHhhhchHHHhhhCCC-CcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCcc----HHHHH-H
Q 022904 15 KISMASSSIEFVERGHQ-SSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG----YLDAL-N 88 (290)
Q Consensus 15 E~~lG~~~~~~~~~~~R-~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~----~~~~~-~ 88 (290)
|+-|-++|+++.++.++ +-++|.|=+.+. .-.+++..-+++.-++.+ -++++.+|.|...... ...+. .
T Consensus 72 ~~~L~~aI~~~~~~~p~p~~i~V~~tc~~~---liGdDi~~v~~~~~~~~~--~~~vi~v~tpgf~g~~~~~G~~~a~~a 146 (415)
T cd01977 72 EKKLKKNIIEAFKEFPDIKRMTVYTTCTTA---LIGDDIKAVAKEVMEELP--DVDIFVCNAPGFAGPSQSKGHHVLNIA 146 (415)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEECCCchh---hhcCCHHHHHHHHHHhcC--CCeEEEEeCCCcCCcchhHHHHHHHHH
Confidence 67778888888776543 458888877652 334666666666555543 2689999998765431 12222 2
Q ss_pred HHHHHHH--------cCCccEEEccCC--CHHHHHHHHHc-CCCe
Q 022904 89 HLTDLKE--------EGKIKTVALTNF--DTERLRIILEN-GIPV 122 (290)
Q Consensus 89 ~l~~L~~--------~G~ir~iGvs~~--~~~~l~~~~~~-~~~~ 122 (290)
.++.+.. ++.|--||-.++ +.+.+.++++. ++.+
T Consensus 147 l~~~l~~~~~~~~~~~~~VNliG~~~~~~d~~ei~~lL~~~Gl~v 191 (415)
T cd01977 147 WINQKVGTVEPEITSDYTINYIGDYNIQGDTEVLQKYFERMGIQV 191 (415)
T ss_pred HHHHhhCcCCcCcCCCCcEEEEccCCCcccHHHHHHHHHHcCCeE
Confidence 2333431 467888885443 33566667664 4444
No 217
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.05 E-value=4.8e+02 Score=24.02 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=57.5
Q ss_pred EEEEecCCCC-----------CccHHHHHHHHHHHHHc-CC---ccEEEcc--CCCHHHHHHHHHc--CCCeeeeecccc
Q 022904 70 MLQFHWWDYS-----------NPGYLDALNHLTDLKEE-GK---IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHS 130 (290)
Q Consensus 70 l~~lH~p~~~-----------~~~~~~~~~~l~~L~~~-G~---ir~iGvs--~~~~~~l~~~~~~--~~~~~~~q~~~n 130 (290)
.+-||.|+.. .+ ++++++++.++.++ |+ ++|+=+. |-+.+.+.++.+. +.+..++-++||
T Consensus 215 aiSLhA~~~e~R~~l~Pi~~~~~-le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN 293 (342)
T PRK14465 215 AISLNHPDPNGRLQIMDIEEKFP-LEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLN 293 (342)
T ss_pred EEEecCCChhhcceEeeccccCC-HHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccC
Confidence 3668887422 33 68899999977754 22 2233232 4566777777665 566788899999
Q ss_pred ccccC---h----hhhHHHHHHHhCCeEEecccccc
Q 022904 131 VVDMR---P----QQKMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 131 ~~~~~---~----~~~~~~~~~~~gi~via~spl~~ 159 (290)
+-... + -....+..+++||.+..+...+.
T Consensus 294 ~~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 294 TEFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 74211 1 13466777888999999877654
No 218
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=28.05 E-value=2.1e+02 Score=26.77 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeeeeccccccccChh-hhHHHHHHHhC-CeEEeccccccc
Q 022904 83 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTG-VKLITYGTVMGG 160 (290)
Q Consensus 83 ~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~g-i~via~spl~~G 160 (290)
+..+...++++....-|...=+...+.+.++.+++...+..++..+=|+.-.-.+ ..+.+.|+++| +.++.=.+++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 4677888887665555655445556788888888756778889999998755543 46899999999 999988888776
Q ss_pred ccc
Q 022904 161 LLS 163 (290)
Q Consensus 161 ~L~ 163 (290)
.+.
T Consensus 184 ~~~ 186 (386)
T PF01053_consen 184 YNQ 186 (386)
T ss_dssp TTC
T ss_pred eee
Confidence 554
No 219
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=27.95 E-value=3e+02 Score=25.57 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeeeeccccccccCh-hhhHHHHHHHhCCeEEeccccccc
Q 022904 84 LDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 84 ~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~via~spl~~G 160 (290)
......+..+...+.+...-+...+.+.+.+++..+.+..++..+-|+.-.-. -..+.+.|+++|+-++.=.+++.+
T Consensus 101 ~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~ 178 (382)
T TIGR02080 101 GGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSP 178 (382)
T ss_pred HHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 34555566655555555555555567777777653455666666777643322 347899999999988865555444
No 220
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=27.87 E-value=2.6e+02 Score=27.04 Aligned_cols=100 Identities=13% Similarity=0.170 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCc-----cHHHHHHHHHHHHHc-CCccE---------EEccCCCHHH
Q 022904 47 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP-----GYLDALNHLTDLKEE-GKIKT---------VALTNFDTER 111 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~-----~~~~~~~~l~~L~~~-G~ir~---------iGvs~~~~~~ 111 (290)
++.+.... +-+.|.++|++.|.+. .....+ ..+..|+.++.+++. ..++. +|..+...+.
T Consensus 22 ~~t~dkl~-Ia~~Ld~~Gv~~IE~~----ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDv 96 (467)
T PRK14041 22 MRTEDMLP-ALEAFDRMGFYSMEVW----GGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDV 96 (467)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEec----CCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchh
Confidence 44555544 4455888899998883 110000 012356677777665 23333 2332333333
Q ss_pred ----HHHHHHcCCCeeeeeccccccccChhhhHHHHHHHhCCeEEe
Q 022904 112 ----LRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 112 ----l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
++.+.+.+ ++.+.+...+.+...-...++++++.|..+.+
T Consensus 97 v~~fv~~A~~~G--vd~irif~~lnd~~n~~~~i~~ak~~G~~v~~ 140 (467)
T PRK14041 97 VELFVKKVAEYG--LDIIRIFDALNDIRNLEKSIEVAKKHGAHVQG 140 (467)
T ss_pred hHHHHHHHHHCC--cCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEE
Confidence 33444334 45555555554444445678999999987764
No 221
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=27.86 E-value=4.8e+02 Score=25.47 Aligned_cols=103 Identities=11% Similarity=0.093 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcC----------CccEEEccCCCHHHHHHH
Q 022904 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG----------KIKTVALTNFDTERLRII 115 (290)
Q Consensus 46 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G----------~ir~iGvs~~~~~~l~~~ 115 (290)
.++.+.-. .+-+.|.++|+|+|.+-+ |... .+..++++.+.+.+ ..+-.+++....+.++.+
T Consensus 102 ~fs~eeKi-~Ia~~L~~~GVd~IEvG~---Pa~s----~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a 173 (503)
T PLN03228 102 SLTPPQKL-EIARQLAKLRVDIMEVGF---PGSS----EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAA 173 (503)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEeC---CCCC----HHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHH
Confidence 35555544 455669999998888744 4322 23344455554432 123346666666777777
Q ss_pred HHc----CCCeeeeecccccccc------Ch------hhhHHHHHHHhCCeEEeccc
Q 022904 116 LEN----GIPVVSNQVQHSVVDM------RP------QQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 116 ~~~----~~~~~~~q~~~n~~~~------~~------~~~~~~~~~~~gi~via~sp 156 (290)
.+. +.+...+-+.-+.++. .. -.+.+++++++|...+.+++
T Consensus 174 ~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ 230 (503)
T PLN03228 174 WEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC 230 (503)
T ss_pred HHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc
Confidence 765 2221222222222211 11 24678899999976555544
No 222
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=27.66 E-value=4.7e+02 Score=24.34 Aligned_cols=103 Identities=14% Similarity=0.010 Sum_probs=59.1
Q ss_pred hhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccH---HHHHHHH
Q 022904 14 LKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGY---LDALNHL 90 (290)
Q Consensus 14 sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~---~~~~~~l 90 (290)
.|+-|-++++++.++.+.+-++|.|=+-+.- -.+++..-+++.-++.+ +.++.+|.|....... +.++++|
T Consensus 71 g~~~L~~aI~ei~~~~~P~~I~V~sTCv~e~---IGDDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~~G~~~~~~al 144 (396)
T cd01979 71 DYAELDRVVTQIKRDRNPSVIFLIGSCTTEV---IKMDLEGAAPRLSAEIG---VPILVASASGLDYTFTQGEDTVLAAL 144 (396)
T ss_pred chHHHHHHHHHHHHhcCCCEEEEECCCHHHH---HhcCHHHHHHHHhhcCC---CcEEEeeCCCccccHHHHHHHHHHHH
Confidence 4667777788887776667788888775422 23444444444444443 5888899887654322 3333333
Q ss_pred HHHHH-----cCCccEEEccCC-CHHHHHHHHHc-CCCe
Q 022904 91 TDLKE-----EGKIKTVALTNF-DTERLRIILEN-GIPV 122 (290)
Q Consensus 91 ~~L~~-----~G~ir~iGvs~~-~~~~l~~~~~~-~~~~ 122 (290)
-+... .+.|--+|..+- +.+.+..+++. |+.+
T Consensus 145 v~~~~~~~~~~~~VnliG~~~~~d~~el~~lL~~~Gi~v 183 (396)
T cd01979 145 VPRCPEKPSPERSLVLVGSLPDIVEDQLRRELEQLGIPV 183 (396)
T ss_pred hhhcccccCCCCceEEEEeCCcchHHHHHHHHHHcCCeE
Confidence 33221 256667886543 34566666664 4443
No 223
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.54 E-value=3.9e+02 Score=24.46 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHcCCc---cEEEcc--CCCHHHHHHHHHc--CCCeeeeeccccccccCh----h---hhHHHHH--HH
Q 022904 83 YLDALNHLTDLKEEGKI---KTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDMRP----Q---QKMAELC--QL 146 (290)
Q Consensus 83 ~~~~~~~l~~L~~~G~i---r~iGvs--~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~~----~---~~~~~~~--~~ 146 (290)
++++++++..+.+.|+- +++=+. |.+.+.+.++.+. +.+..++-++||+..... + ..+.+.. ++
T Consensus 230 le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~~~~~~p~~~~i~~f~~~l~~~~ 309 (336)
T PRK14470 230 LDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDATGRYRPPDEDEWNAFRDALAREL 309 (336)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCCCCccCCCHHHHHHHHHHHHHcc
Confidence 67899999998887542 232222 4567777777665 677889999999854321 2 2345555 36
Q ss_pred hCCeEEecccccc
Q 022904 147 TGVKLITYGTVMG 159 (290)
Q Consensus 147 ~gi~via~spl~~ 159 (290)
+|+.+..+...+.
T Consensus 310 ~g~~~~~R~~~G~ 322 (336)
T PRK14470 310 PGTPVVRRYSGGQ 322 (336)
T ss_pred CCeEEEEECCCCC
Confidence 6888888766654
No 224
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=27.31 E-value=5.3e+02 Score=24.27 Aligned_cols=104 Identities=12% Similarity=0.155 Sum_probs=62.0
Q ss_pred hhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCcc----HHHHHHH
Q 022904 14 LKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG----YLDALNH 89 (290)
Q Consensus 14 sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~----~~~~~~~ 89 (290)
.|+-|-++|+++.++.+.+-++|.|=+.+.- -.+++..-+++.-++++ +.++.+|.|...... .+.++++
T Consensus 73 g~~kL~~aI~~~~~~~~P~~I~V~ttC~~~i---IGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~~~G~~~a~~a 146 (426)
T cd01972 73 GEKKLEDTIKEAYSRYKPKAIFVATSCATGI---IGDDVESVVEELEDEIG---IPVVALHCEGFKGKHWRSGFDAAFHG 146 (426)
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEECCChHHH---hccCHHHHHHHHHHhhC---CCEEEEeCCccCCccHhHHHHHHHHH
Confidence 3677788888887666667788888775422 22444444444444454 689999998665521 2344444
Q ss_pred HHHHH--------HcCCccEEEccCC-------CHHHHHHHHHc-CCCee
Q 022904 90 LTDLK--------EEGKIKTVALTNF-------DTERLRIILEN-GIPVV 123 (290)
Q Consensus 90 l~~L~--------~~G~ir~iGvs~~-------~~~~l~~~~~~-~~~~~ 123 (290)
+-+.. +++.|--||..+. +.+.+..+++. ++++.
T Consensus 147 l~~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~ 196 (426)
T cd01972 147 ILRHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVN 196 (426)
T ss_pred HHHHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEE
Confidence 44322 2345777887653 34667777775 54443
No 225
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=27.31 E-value=98 Score=19.37 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=27.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHhCCCcceeeecCCCCCHhHHHHhHhhhcC
Q 022904 208 LKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML 257 (290)
Q Consensus 208 l~~la~~~g~s~~~~al~~~l~~~~v~~~i~g~~~~~~~~l~enl~a~~~ 257 (290)
++++|+..|+|++-+. .+++.+. -+... +.+++.+.++.++.
T Consensus 2 i~dIA~~agvS~~TVS--r~ln~~~----~vs~~--tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVS--RVLNGPP----RVSEE--TRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHH--HHHTTCS----SSTHH--HHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHH--HHHhCCC----CCCHH--HHHHHHHHHHHHCC
Confidence 6789999999988755 4455442 23455 67777777765543
No 226
>PRK09726 antitoxin HipB; Provisional
Probab=27.08 E-value=1.8e+02 Score=20.64 Aligned_cols=55 Identities=11% Similarity=0.064 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCcceeeecCCCCCHhHHHHhHhhhcCCCC
Q 022904 206 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLD 260 (290)
Q Consensus 206 ~~l~~la~~~g~s~~~~al~~~l~~~~v~~~i~g~~~~~~~~l~enl~a~~~~Lt 260 (290)
..++.+.++.|+|..++|-+--++++.+.-..-|.+..+.+.+...+++++..++
T Consensus 15 ~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~l~~ia~~lgv~~~ 69 (88)
T PRK09726 15 NAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMT 69 (88)
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCcc
Confidence 5677777788888888776655555444433334332256666666666665543
No 227
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=26.87 E-value=2.9e+02 Score=24.14 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEE--EccCCCHHHHHHHHHcCC---C
Q 022904 47 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--ALTNFDTERLRIILENGI---P 121 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~i--Gvs~~~~~~l~~~~~~~~---~ 121 (290)
++-+.|..-+.+.-+ +--|+.=||+-|+.. ...+++.|++|.+.|--=.+ |||.|......--.+... .
T Consensus 59 ~tLeeIi~~m~~a~~----~Gk~VvRLhSGDpsi--YgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vs 132 (254)
T COG2875 59 LTLEEIIDLMVDAVR----EGKDVVRLHSGDPSI--YGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVS 132 (254)
T ss_pred CCHHHHHHHHHHHHH----cCCeEEEeecCChhH--HHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcc
Confidence 345555554444433 345899999876644 37999999999999865444 777654333222222211 1
Q ss_pred eeeeeccccccccChhhhHHHHHHHhCCeEEec
Q 022904 122 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 154 (290)
Q Consensus 122 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 154 (290)
=.++-.+.+.-..-++++.+....++|..+..|
T Consensus 133 QtvilTR~sgrt~vpe~e~l~~la~~~aTm~I~ 165 (254)
T COG2875 133 QTVILTRPSGRTPVPEKESLAALAKHGATMVIF 165 (254)
T ss_pred eeEEEEccccCCCCCchhHHHHHHhcCceeEee
Confidence 222333444433334778888888888877765
No 228
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=26.84 E-value=7.8e+02 Score=26.05 Aligned_cols=102 Identities=12% Similarity=0.075 Sum_probs=61.4
Q ss_pred hhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCcc---HHHHHHH-
Q 022904 14 LKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG---YLDALNH- 89 (290)
Q Consensus 14 sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~---~~~~~~~- 89 (290)
.|+-|-++|+++.++.+.+-++|.|-+.+.- -.+++..-+++.-++++ +.++.++.|...... ......+
T Consensus 96 G~~kL~~aI~~~~~~~~P~~I~V~tTC~~el---IGDDi~~v~~~~~~~~~---~pvi~v~tpGF~gs~~~G~~~a~~al 169 (917)
T PRK14477 96 GEKKLYRAILELAERYQPKAVFVYATCVTAL---TGDDVEAVCKAAAEKVG---IPVIPVNTPGFIGDKNIGNRLAGEAL 169 (917)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEECCchHHH---hccCHHHHHHHHHHhhC---CcEEEEECCCccCchhhHHHHHHHHH
Confidence 5778888888887777667788888775422 23555555555444544 579999998765432 1222323
Q ss_pred HHHHHH--------cCCccEEEccCCCH--HHHHHHHHc-CCC
Q 022904 90 LTDLKE--------EGKIKTVALTNFDT--ERLRIILEN-GIP 121 (290)
Q Consensus 90 l~~L~~--------~G~ir~iGvs~~~~--~~l~~~~~~-~~~ 121 (290)
++.+.. .+.|--||-.++.. +.+..+++. ++.
T Consensus 170 ~~~l~~~~~p~~~~~~~VNliG~~~~~gd~~elk~lL~~~Gi~ 212 (917)
T PRK14477 170 LKHVIGTAEPEVTTPYDINLIGEYNIAGDLWGMLPLFDRLGIR 212 (917)
T ss_pred HHHHHhhcCCCCCCCCcEEEECCCCCcchHHHHHHHHHHcCCe
Confidence 234432 35677888666533 456666664 544
No 229
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.84 E-value=2.7e+02 Score=23.68 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccC-CCHHHHHHHHHcCCCeeeee
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 126 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~q 126 (290)
+.+...+-++. |..-|++ ++=+-+- ..+.++.++.|+++.-=..||.-+ .+.++++.+++.|-.|.+
T Consensus 25 ~~~~a~~i~~a-l~~~Gi~---~iEitl~------~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fiv-- 92 (212)
T PRK05718 25 KLEDAVPLAKA-LVAGGLP---VLEVTLR------TPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIV-- 92 (212)
T ss_pred CHHHHHHHHHH-HHHcCCC---EEEEecC------CccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEE--
Confidence 45666555544 4455554 4444321 235566777777653335678665 477899999987766553
Q ss_pred ccccccccChhhhHHHHHHHhCCeEEe
Q 022904 127 VQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 127 ~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
+ +....++++.|++.||.++.
T Consensus 93 ---s---P~~~~~vi~~a~~~~i~~iP 113 (212)
T PRK05718 93 ---S---PGLTPPLLKAAQEGPIPLIP 113 (212)
T ss_pred ---C---CCCCHHHHHHHHHcCCCEeC
Confidence 2 22345899999999998883
No 230
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=26.61 E-value=2e+02 Score=25.69 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCcceeeecCCCCCHhHHHHhHhhhc--------CC--CCHHHHHHHHHHHhcC
Q 022904 206 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFM--------LS--LDEDDVNSIQEVTKKG 274 (290)
Q Consensus 206 ~~l~~la~~~g~s~~~~al~~~l~~~~v~~~i~g~~~~~~~~l~enl~a~~--------~~--Lt~e~~~~l~~~~~~~ 274 (290)
+..++++++++....---+.=++..+.|..|++.+. +..|.+-.+++++ +| +|.+|.++|.++.++.
T Consensus 41 ~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp--~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~ 117 (342)
T COG0673 41 ERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATP--NALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKA 117 (342)
T ss_pred HHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCC--ChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 678889999998722223666778887888888888 7777777776664 34 6779999888888765
No 231
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=26.54 E-value=6.7e+02 Score=26.00 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHH
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE 117 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~ 117 (290)
.......+|.+.|+.||.++=.-. ......++...+.+++|.++|++ |+..| +.+.+.+...
T Consensus 78 ~~~e~~~~I~~dl~wLG~~wd~~~-----~~qS~~~~~y~~~a~~Li~~G~a-Y~c~c--s~eei~~~r~ 139 (771)
T PRK14703 78 EDTEYVEAIKDDVRWLGFDWGEHL-----YYASDYFERMYAYAEQLIKMGLA-YVDSV--SEEEIRELRG 139 (771)
T ss_pred CChHHHHHHHHHHHHcCCCCCCCc-----eEeecCHHHHHHHHHHHHHcCCc-ccCcC--CHHHHHHHHh
Confidence 357788899999999999763221 11233378888999999999996 54444 6677666554
No 232
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=26.52 E-value=1.3e+02 Score=24.83 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=29.9
Q ss_pred ccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEE--EccC
Q 022904 68 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--ALTN 106 (290)
Q Consensus 68 iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~i--Gvs~ 106 (290)
-+|++++....... ..+-++.|+.+..+|++|++ |+.+
T Consensus 78 n~l~lv~~~~rNp~-S~~hvq~l~~l~nqg~Lr~~nLG~~S 117 (173)
T PF10171_consen 78 NDLLLVSPAIRNPT-SDKHVQRLMRLRNQGRLRYLNLGLFS 117 (173)
T ss_pred CceeccChhhcCch-HHHHHHHHHHHhcCCceEEeeeeeEE
Confidence 47788886655555 68999999999999999985 5553
No 233
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=26.50 E-value=2.7e+02 Score=26.12 Aligned_cols=79 Identities=19% Similarity=0.284 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcC-CccEEEccCC---CHHHHHHHHHcCCCeeeeecccccc-ccChhhhHHHHHHHhCCeEEeccccc
Q 022904 84 LDALNHLTDLKEEG-KIKTVALTNF---DTERLRIILENGIPVVSNQVQHSVV-DMRPQQKMAELCQLTGVKLITYGTVM 158 (290)
Q Consensus 84 ~~~~~~l~~L~~~G-~ir~iGvs~~---~~~~l~~~~~~~~~~~~~q~~~n~~-~~~~~~~~~~~~~~~gi~via~spl~ 158 (290)
..+++.+..|..+| .|.|+.|... +++++++++......+.++.--|-. .-.+-.++-+.|+++|+.+..=.+-+
T Consensus 102 ~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa 181 (386)
T COG1104 102 PAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQA 181 (386)
T ss_pred HHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhh
Confidence 57888888887778 8999988865 4677777775433344444333321 12345689999999997776655555
Q ss_pred cccc
Q 022904 159 GGLL 162 (290)
Q Consensus 159 ~G~L 162 (290)
-|.+
T Consensus 182 ~Gki 185 (386)
T COG1104 182 VGKI 185 (386)
T ss_pred cCce
Confidence 5544
No 234
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=26.45 E-value=2.5e+02 Score=24.81 Aligned_cols=99 Identities=14% Similarity=0.076 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhhCCCcccEEEEecCC--CCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeeeecc
Q 022904 51 IVRESIDVSRRRMDVPCLDMLQFHWWD--YSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQ 128 (290)
Q Consensus 51 ~i~~~~~~SL~~Lg~d~iDl~~lH~p~--~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~ 128 (290)
.-+..+-+.|.++|+++|.+=..-+|. +...+.+++...+.. ...++..+++ -....++.+++.+.+...+-+.
T Consensus 20 e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~---~~~~~~~~~~-~~~~dv~~A~~~g~~~i~i~~~ 95 (274)
T cd07938 20 EDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR---RPGVRYSALV-PNLRGAERALAAGVDEVAVFVS 95 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc---CCCCEEEEEC-CCHHHHHHHHHcCcCEEEEEEe
Confidence 445556667999999999987443332 222223444444443 2346677775 4677888888865433222222
Q ss_pred cccc------ccCh------hhhHHHHHHHhCCeEEe
Q 022904 129 HSVV------DMRP------QQKMAELCQLTGVKLIT 153 (290)
Q Consensus 129 ~n~~------~~~~------~~~~~~~~~~~gi~via 153 (290)
.|-. +... -.+.+++++++|+.+..
T Consensus 96 ~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~ 132 (274)
T cd07938 96 ASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRG 132 (274)
T ss_pred cCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 2221 1111 23568899999998864
No 235
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=26.37 E-value=2e+02 Score=23.00 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=39.6
Q ss_pred EEccCCCH--HHHHHHHHcCCCeeeeeccccccccChhhhHHHHHHHhCCeEEeccccccccc
Q 022904 102 VALTNFDT--ERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLL 162 (290)
Q Consensus 102 iGvs~~~~--~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~L 162 (290)
+|...|+. ..+..+.. ...|+++... +.+.+ .+.+..+.+.++.+++.|.+.++.+
T Consensus 20 ~GlDgHd~gakvia~~l~-d~GfeVi~~g---~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h~ 77 (143)
T COG2185 20 LGLDGHDRGAKVIARALA-DAGFEVINLG---LFQTP-EEAVRAAVEEDVDVIGVSSLDGGHL 77 (143)
T ss_pred cCccccccchHHHHHHHH-hCCceEEecC---CcCCH-HHHHHHHHhcCCCEEEEEeccchHH
Confidence 57777754 55666666 4456655443 33555 5899999999999999999988754
No 236
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.27 E-value=5.3e+02 Score=23.96 Aligned_cols=85 Identities=13% Similarity=0.034 Sum_probs=55.4
Q ss_pred EEEEecCCCCCccHHHHHHHHHHHHHc------CCccEEEccCCCHHHHHHHHHcCCCeeeeecccccccc-ChhhhHHH
Q 022904 70 MLQFHWWDYSNPGYLDALNHLTDLKEE------GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAE 142 (290)
Q Consensus 70 l~~lH~p~~~~~~~~~~~~~l~~L~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~ 142 (290)
++++-.|-+..+ .++-++.+.+|++. +.--..|-+.++.+.+..+++. -..+++|+..+-.-. ..-..+.+
T Consensus 229 ~~~iEqP~~~~d-~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~-~a~div~~kl~k~GGIt~a~kia~ 306 (369)
T cd03314 229 PLRIEGPMDAGS-REAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADA-GAAHMVQIKTPDLGGIDNTIDAVL 306 (369)
T ss_pred cEEEecCCCCCc-chhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHh-CCCCEEEecchhcCCHHHHHHHHH
Confidence 456776654322 12345666677665 3334556677788888888874 347777877764321 12357899
Q ss_pred HHHHhCCeEEeccc
Q 022904 143 LCQLTGVKLITYGT 156 (290)
Q Consensus 143 ~~~~~gi~via~sp 156 (290)
+|+.+||.++..+.
T Consensus 307 lA~a~Gi~~~~h~~ 320 (369)
T cd03314 307 YCKEHGVGAYLGGS 320 (369)
T ss_pred HHHHcCCcEEEeCC
Confidence 99999999998654
No 237
>PRK10200 putative racemase; Provisional
Probab=26.26 E-value=4.1e+02 Score=22.69 Aligned_cols=67 Identities=13% Similarity=0.061 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEecCC------------CCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHH
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWD------------YSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 115 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~------------~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~ 115 (290)
+.+..++=++..-.+.+-+++|.+.+|+++ .+.+ .....+.++.|.+.| +..|.+.--+.......
T Consensus 15 T~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~l~~~~~~L~~~g-~~~iviaCNTah~~~~~ 92 (230)
T PRK10200 15 TIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKT-GDILAEAALGLQRAG-AEGIVLCTNTMHKVADA 92 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchH-HHHHHHHHHHHHHcC-CCEEEECCchHHHHHHH
Confidence 456777777777778888999999999973 1122 567777888888777 68888765554443333
Q ss_pred H
Q 022904 116 L 116 (290)
Q Consensus 116 ~ 116 (290)
+
T Consensus 93 l 93 (230)
T PRK10200 93 I 93 (230)
T ss_pred H
Confidence 3
No 238
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=26.13 E-value=3.9e+02 Score=24.73 Aligned_cols=88 Identities=15% Similarity=0.068 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeeeec
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQV 127 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~ 127 (290)
+.+.+++++.+-.+.|.. .+.+++---. .+ ...+ +..|.+.| .|+.-.+...++.++..+++.+ ++
T Consensus 9 d~~~l~~~~~~l~~a~~~-~~~~~yAvKa---N~-~~~i---l~~l~~~G----~g~DvaS~~El~~al~~G~~~~--~I 74 (379)
T cd06836 9 DLDGFRALVARLTAAFPA-PVLHTFAVKA---NP-LVPV---LRLLAEAG----AGAEVASPGELELALAAGFPPE--RI 74 (379)
T ss_pred cHHHHHHHHHHHHHhcCC-CcEEEEEEec---CC-CHHH---HHHHHHcC----CcEEEcCHHHHHHHHHcCCChh--hE
Confidence 556777777777666653 1222222211 11 1233 33344455 3555556677777766554443 55
Q ss_pred cccccccChhhhHHHHHHHhCCeE
Q 022904 128 QHSVVDMRPQQKMAELCQLTGVKL 151 (290)
Q Consensus 128 ~~n~~~~~~~~~~~~~~~~~gi~v 151 (290)
.||- .....+.+++|.++|+.+
T Consensus 75 i~~g--p~K~~~~L~~ai~~gv~i 96 (379)
T cd06836 75 VFDS--PAKTRAELREALELGVAI 96 (379)
T ss_pred EEeC--CCCCHHHHHHHHHCCCEE
Confidence 5644 222235666777777643
No 239
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=26.06 E-value=1.5e+02 Score=22.23 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEc
Q 022904 53 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVAL 104 (290)
Q Consensus 53 ~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGv 104 (290)
+..+.+.++.+. .+|.+++++.+.-.....+.+..++.+.+.| |+-+-+
T Consensus 42 R~~~~~ll~~~~--~~d~lvv~~~dRl~R~~~e~~~~~~~l~~~g-i~l~~~ 90 (126)
T cd03768 42 RPELQKLLEDLR--EGDTLVVTKLDRLGRSTKDLLEIVEELREKG-VSLRSL 90 (126)
T ss_pred CHHHHHHHHhCc--CCCEEEEEEcchhcCcHHHHHHHHHHHHHCC-CEEEEe
Confidence 344455555554 5799999998877776678888888887776 444433
No 240
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.92 E-value=2.8e+02 Score=23.80 Aligned_cols=88 Identities=10% Similarity=0.115 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHH----HcCCccEEEccC-CCHHHHHHHHHcCCCe
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK----EEGKIKTVALTN-FDTERLRIILENGIPV 122 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~----~~G~ir~iGvs~-~~~~~l~~~~~~~~~~ 122 (290)
+++...+-++ .|-+-|+..|-+ -+ ..+ ...+.++.|+ ++.-=-.||+-+ .+.++++.+++.+-.|
T Consensus 25 ~~~~a~~~~~-al~~gGi~~iEi---T~---~tp---~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~F 94 (222)
T PRK07114 25 DVEVAKKVIK-ACYDGGARVFEF---TN---RGD---FAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANF 94 (222)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEE---eC---CCC---cHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCE
Confidence 3455555444 444667654433 33 222 3334444443 332113588765 5899999999887655
Q ss_pred eeeeccccccccChhhhHHHHHHHhCCeEEe
Q 022904 123 VSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 123 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
.+ + +....+++++|+++||.++.
T Consensus 95 iV-----s---P~~~~~v~~~~~~~~i~~iP 117 (222)
T PRK07114 95 IV-----T---PLFNPDIAKVCNRRKVPYSP 117 (222)
T ss_pred EE-----C---CCCCHHHHHHHHHcCCCEeC
Confidence 52 2 23356899999999999885
No 241
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=25.91 E-value=2.7e+02 Score=27.62 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHH
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE 117 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~ 117 (290)
..+....+|.+.|+.||+++ |-.. ...+.++..++..++|.++|++ |...| +.+++.+...
T Consensus 98 ~~~e~~~~I~~dL~wLGi~~-D~~~-----~qS~y~~~~ye~A~~Li~~G~A-Y~C~c--s~eei~~~R~ 158 (574)
T PTZ00437 98 EEQVYIDAIMEMVKWMGWKP-DWVT-----FSSDYFDQLHEFAVQLIKDGKA-YVDHS--TPDELKQQRE 158 (574)
T ss_pred cChHHHHHHHHHHHHcCCCC-CCCC-----cCchhHHHHHHHHHHHHHcCCE-EEcCC--CHHHHHHHhh
Confidence 45778889999999999986 5322 2244467788999999999997 55555 5566555443
No 242
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=25.79 E-value=1.7e+02 Score=22.05 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=26.4
Q ss_pred cCCccEEEccCC---CHHHHHHHHHcCCCeeeeeccccccccChhhhHHHHHHHhCCeEEecc
Q 022904 96 EGKIKTVALTNF---DTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 96 ~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 155 (290)
.+.+..+=+..- .++.++++.+.+.+-.++|.. ..+.++.++|+++|+.+++=.
T Consensus 53 p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g------~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 53 PEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG------AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp SST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT------S--HHHHHHHHHTT-EEEESS
T ss_pred CCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc------hHHHHHHHHHHHcCCEEEeCC
Confidence 345554444321 233344444335554444444 334689999999999998643
No 243
>PHA02128 hypothetical protein
Probab=25.78 E-value=1.8e+02 Score=21.98 Aligned_cols=72 Identities=7% Similarity=0.242 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-------------------CCC-eeeeeccccccccChhhhHHH
Q 022904 83 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-------------------GIP-VVSNQVQHSVVDMRPQQKMAE 142 (290)
Q Consensus 83 ~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~-------------------~~~-~~~~q~~~n~~~~~~~~~~~~ 142 (290)
....+....++..+|-+|-|-....+...+...+.. .++ ..+...+|.+..+....++.+
T Consensus 59 t~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiyd 138 (151)
T PHA02128 59 TTGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYD 138 (151)
T ss_pred cchHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHh
Confidence 347788888999999999998887777777666554 111 122344566665666678999
Q ss_pred HHHHhCCeEEec
Q 022904 143 LCQLTGVKLITY 154 (290)
Q Consensus 143 ~~~~~gi~via~ 154 (290)
++-.+|+.++.+
T Consensus 139 wagthgvefvim 150 (151)
T PHA02128 139 WAGTHGVEFVIM 150 (151)
T ss_pred hcccCceEEEEe
Confidence 999999998764
No 244
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=25.69 E-value=3.9e+02 Score=22.17 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=47.0
Q ss_pred HHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccC-CCHHHHHHHHHcCCCeeeeeccccccccChh
Q 022904 59 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQVQHSVVDMRPQ 137 (290)
Q Consensus 59 SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~ 137 (290)
....+|+||+=+.+ .|..... -..+.+.+|.+.-..+.+||.. -+.+.+.++++ ...++++|++-+. .
T Consensus 14 ~~~~~g~d~~Gfi~--~~~S~R~---v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~-~~~ld~vQLHG~e-----~ 82 (197)
T PF00697_consen 14 LAAELGADYLGFIF--YPKSPRY---VSPDQARELVSAVPPKIVGVFVNQSPEEILEIVE-ELGLDVVQLHGDE-----S 82 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB-----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHH-HCTESEEEE-SGG------
T ss_pred HHHHcCCCEEeeec--CCCCCCc---cCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHH-HcCCCEEEECCCC-----C
Confidence 45678998887753 3432222 1233445555554445889874 56777777776 5789999988765 2
Q ss_pred hhHHHHHHHhCCeEE
Q 022904 138 QKMAELCQLTGVKLI 152 (290)
Q Consensus 138 ~~~~~~~~~~gi~vi 152 (290)
.+..+..+ .++.++
T Consensus 83 ~e~~~~l~-~~~~vi 96 (197)
T PF00697_consen 83 PEYIKLLR-AGLPVI 96 (197)
T ss_dssp HHHHHHHH-TTSEEE
T ss_pred HHHHHHhh-cCceEE
Confidence 34444444 356655
No 245
>COG1513 CynS Cyanate lyase [Inorganic ion transport and metabolism]
Probab=25.60 E-value=3.3e+02 Score=21.36 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=35.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHhCCCcceeeecCCCCCHhHHHHhHhhhcCCCCHHHHHHHHHHH
Q 022904 208 LKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVT 271 (290)
Q Consensus 208 l~~la~~~g~s~~~~al~~~l~~~~v~~~i~g~~~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~ 271 (290)
+..+++..|.+..-+|..+.-++.. +.++.+...++++ |+++.+..|..+-
T Consensus 24 faDl~~~lG~~ev~vaa~~ygqa~~-----------~~~ear~v~e~L~--L~~~~v~~L~~~p 74 (151)
T COG1513 24 FADLADGLGLAEVFVAAALYGQAAL-----------PADEARAVGEALD--LDEDAILLLQMIP 74 (151)
T ss_pred HHHHHhhcCccHHHHHHHHHhhccC-----------CHHHHHHHHHHhC--CCHHHHHHhhccC
Confidence 4556666666666666655555421 6788888888776 8999999988774
No 246
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=25.51 E-value=3.2e+02 Score=23.04 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=38.7
Q ss_pred HHHHHHcCCccEEEccCCCHHHHHHHHHc--CCCeeee----------------------eccccccc---cChhhhHHH
Q 022904 90 LTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVSN----------------------QVQHSVVD---MRPQQKMAE 142 (290)
Q Consensus 90 l~~L~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~~----------------------q~~~n~~~---~~~~~~~~~ 142 (290)
++.+++.|....+=+++|+++.+..+.+. .++..+. +..+..++ .....++++
T Consensus 109 ~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 188 (226)
T cd08568 109 LEIVEKFNALDRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEGFSIPELHEKLKLYSLHVPIDAIGYIGFEKFVELLR 188 (226)
T ss_pred HHHHHHcCCCCcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccccCHHHHHHhcCCcEeccchhhhccccccccHHHHH
Confidence 33444556666777888888888777764 2221111 11111110 001257899
Q ss_pred HHHHhCCeEEecc
Q 022904 143 LCQLTGVKLITYG 155 (290)
Q Consensus 143 ~~~~~gi~via~s 155 (290)
.++++|+.|.+|.
T Consensus 189 ~~~~~G~~v~~WT 201 (226)
T cd08568 189 LLRKLGLKIVLWT 201 (226)
T ss_pred HHHHCCCEEEEEc
Confidence 9999999999995
No 247
>PRK08084 DNA replication initiation factor; Provisional
Probab=25.35 E-value=1.2e+02 Score=26.00 Aligned_cols=46 Identities=9% Similarity=0.097 Sum_probs=33.5
Q ss_pred cccEEEEecCCCCC---ccHHHHHHHHHHHHHcCCccEEEccCCCHHHH
Q 022904 67 CLDMLQFHWWDYSN---PGYLDALNHLTDLKEEGKIKTVALTNFDTERL 112 (290)
Q Consensus 67 ~iDl~~lH~p~~~~---~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l 112 (290)
..|+++|...+... ...+++.+.+..+.+.|+++.|+.|+..+..+
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 45889987764432 11246678889999999988999998777664
No 248
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=25.15 E-value=5.2e+02 Score=23.40 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEcc--CCCHHHHHHHHHcCCCeeeee
Q 022904 49 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT--NFDTERLRIILENGIPVVSNQ 126 (290)
Q Consensus 49 ~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs--~~~~~~l~~~~~~~~~~~~~q 126 (290)
.+.+++.++...+.||...+.+-+.-........-..+-+.|++|.++| ++.|=|. +|..+.++.+.+
T Consensus 206 ~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V~v~p~gFv~D~lETl~e--------- 275 (316)
T PF00762_consen 206 PAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRVVVVPPGFVSDCLETLYE--------- 275 (316)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEEEEEETT-SSSSHHHHCC---------
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeEEEECCccccccHhHHHH---------
Confidence 4778888888888898876555555333332221245777899999999 5555443 233444444443
Q ss_pred ccccccccChhhhHHHHHHHhCCeEEecccccc
Q 022904 127 VQHSVVDMRPQQKMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 127 ~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~ 159 (290)
+ +-+..+.+.+.|+.-..+-|.-+
T Consensus 276 ----i-----die~re~~~~~G~~~~~~ip~lN 299 (316)
T PF00762_consen 276 ----I-----DIEYRELAEEAGGEEFVRIPCLN 299 (316)
T ss_dssp ----C-----CCHHHHHHHHHTCCEEEE---ST
T ss_pred ----H-----HHHHHHHHHHcCCceEEEeCCCC
Confidence 1 23567889999997777776644
No 249
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=25.13 E-value=3e+02 Score=24.30 Aligned_cols=100 Identities=12% Similarity=0.104 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEEecCCC-C----CccHHHHHHHHHHHHHc---CCccE-------EEccCC----
Q 022904 47 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY-S----NPGYLDALNHLTDLKEE---GKIKT-------VALTNF---- 107 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~-~----~~~~~~~~~~l~~L~~~---G~ir~-------iGvs~~---- 107 (290)
++.+...+ +-..|.++|+++|++-. |.. . .. ..+-++.+..+.+. -++.. +|++.+
T Consensus 18 ~~~~~~~~-ia~~L~~~Gv~~iE~G~---~a~~~~~~~~~-~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~ 92 (275)
T cd07937 18 MRTEDMLP-IAEALDEAGFFSLEVWG---GATFDVCMRFL-NEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDV 92 (275)
T ss_pred ccHHHHHH-HHHHHHHcCCCEEEccC---Ccchhhhcccc-CCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHH
Confidence 34444444 57889999998888873 220 0 00 01223444444432 22222 222222
Q ss_pred CHHHHHHHHHcCCCeeeeeccccccccChhhhHHHHHHHhCCeEEe
Q 022904 108 DTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 108 ~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
....++...+.+ ++++.+.....+...-.+.+++++++|..+..
T Consensus 93 ~~~di~~~~~~g--~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 93 VELFVEKAAKNG--IDIFRIFDALNDVRNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred HHHHHHHHHHcC--CCEEEEeecCChHHHHHHHHHHHHHCCCeEEE
Confidence 233444444433 44444444333333345688999999987764
No 250
>PRK06703 flavodoxin; Provisional
Probab=25.13 E-value=3.3e+02 Score=21.18 Aligned_cols=71 Identities=6% Similarity=-0.137 Sum_probs=34.4
Q ss_pred ccccCCChhhHHhhhchHHHhhhC-CCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCC
Q 022904 6 VFTYGMGLLKISMASSSIEFVERG-HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY 78 (290)
Q Consensus 6 a~~Yg~G~sE~~lG~~~~~~~~~~-~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~ 78 (290)
+|+|+.|.....+...+..+.... +...+.+.+= +...+. ......+.+++.|+++|...+.-.+-+...+
T Consensus 56 spt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~-g~~~y~-~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p 127 (151)
T PRK06703 56 SYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGS-GDTAYP-LFCEAVTIFEERLVERGAELVQEGLKIELAP 127 (151)
T ss_pred ECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEcc-CCCChH-HHHHHHHHHHHHHHHCCCEEcccCeEEecCC
Confidence 577777766655554444442111 1122333321 111111 1234556677888888877665444444333
No 251
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=25.04 E-value=3.6e+02 Score=25.40 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeeeeccccccccChh-hhHHHHHHHhCCeEEeccccccc
Q 022904 83 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 83 ~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~via~spl~~G 160 (290)
+..+...++.+.++.-|....+.....+.+.+.+.. +.+..++..+=||+..-.+ ..+.+.|+++|+.++.=.+|+.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 568889999998888888888887777666666653 6789999999999776654 46899999999888888888887
Q ss_pred cccc
Q 022904 161 LLSE 164 (290)
Q Consensus 161 ~L~~ 164 (290)
.+..
T Consensus 192 ~~q~ 195 (396)
T COG0626 192 VLQR 195 (396)
T ss_pred cccC
Confidence 7754
No 252
>PRK00588 rnpA ribonuclease P; Reviewed
Probab=24.83 E-value=3e+02 Score=20.93 Aligned_cols=64 Identities=8% Similarity=-0.110 Sum_probs=43.9
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCC---CcccEEEEecCCCCCccHHHHHHHHHHHHHc
Q 022904 30 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 96 (290)
Q Consensus 30 ~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~---d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~ 96 (290)
+|=.+.|+=|+|. ...+..+++-+.++.+.+.- ..-|++++..+......+.++.+.|+.+.+.
T Consensus 43 ~R~G~~VsKKvG~---AV~RNRiKR~lRE~~R~~~~~l~~~~~vVviaR~~~~~~~~~~l~~~l~~ll~~ 109 (118)
T PRK00588 43 PRVGLIIAKSVGS---AVERHRVARRLRHVARPILKELHPSDRVVIRALPSSRHVSSARLEQQLRCGLRR 109 (118)
T ss_pred CEEEEEEeeecCc---hhHHHHHHHHHHHHHHHhhhccCCCCEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence 5666788888765 33567777777777766532 2346777688866655577888888777654
No 253
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=24.77 E-value=4.2e+02 Score=22.20 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCC----HHHHHHHHHcCCCeee
Q 022904 49 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD----TERLRIILENGIPVVS 124 (290)
Q Consensus 49 ~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~----~~~l~~~~~~~~~~~~ 124 (290)
...+.+.+++.++.+|.+ +.++ .+...+ .......++.+.++| +..|-++..+ ...++++.+.++|+.+
T Consensus 13 ~~~~~~g~~~~a~~~g~~---~~~~--~~~~~d-~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYE---VEIV--FDAQND-PEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp HHHHHHHHHHHHHHHTCE---EEEE--EESTTT-HHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHcCCE---EEEe--CCCCCC-HHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEE
Confidence 467888999999999863 3333 233344 478888999998887 8888777544 3566666665777655
Q ss_pred eecc
Q 022904 125 NQVQ 128 (290)
Q Consensus 125 ~q~~ 128 (290)
+-..
T Consensus 86 ~d~~ 89 (257)
T PF13407_consen 86 VDSD 89 (257)
T ss_dssp ESST
T ss_pred Eecc
Confidence 4333
No 254
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=24.45 E-value=6.3e+02 Score=24.18 Aligned_cols=105 Identities=13% Similarity=0.094 Sum_probs=61.6
Q ss_pred hhHHhhhchHHHhhhCC-CCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCcc----HHHHHH
Q 022904 14 LKISMASSSIEFVERGH-QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG----YLDALN 88 (290)
Q Consensus 14 sE~~lG~~~~~~~~~~~-R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~----~~~~~~ 88 (290)
.|+-|-++|+++.++.+ .+-++|.|-+-+ ..-.+++..-+++.-++.. -+.++.+|.|...... ...+..
T Consensus 110 g~~kL~~aI~~~~~~~~~p~~I~V~tTC~~---elIGDDi~~v~~~~~~~~~--~~~vi~v~tpgf~g~s~~~G~~~a~~ 184 (461)
T TIGR01860 110 GEKQLEKSIHEAFDEFPDIKRMIVYTTCPT---ALIGDDIKAVAKKVQKELP--DVDIFTVECPGFAGVSQSKGHHVLNI 184 (461)
T ss_pred cHHHHHHHHHHHHHhCCCCCEEEEEccCch---hhhcCCHHHHHHHHHHhcC--CCcEEEEeCCCcCCcccchHHHHHHH
Confidence 47788888988877754 356888886644 2233556555555544442 3689999998765421 122222
Q ss_pred HH-HHHH--------HcCCccEEEccCC--CHHHHHHHHHc-CCCee
Q 022904 89 HL-TDLK--------EEGKIKTVALTNF--DTERLRIILEN-GIPVV 123 (290)
Q Consensus 89 ~l-~~L~--------~~G~ir~iGvs~~--~~~~l~~~~~~-~~~~~ 123 (290)
++ +++. ..+.|--||-.++ +.+.+..+++. |+++.
T Consensus 185 ~~~~~~v~~~~~~~~~~~~VNiiG~~~~~gd~~el~~lL~~~Gi~v~ 231 (461)
T TIGR01860 185 GWINEKVGTLEPEITSEYTINVIGDYNIQGDTQVLQKYWDKMGIQVI 231 (461)
T ss_pred HHHHHHhcccCCCCCCCCcEEEECCCCCcccHHHHHHHHHHcCCcEE
Confidence 22 2221 2467888884443 44667777775 55543
No 255
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=24.34 E-value=4.6e+02 Score=25.93 Aligned_cols=56 Identities=13% Similarity=0.158 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc----CCCeeeeeccccccccChhhhHHHHHHHhCCeEEec
Q 022904 85 DALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 154 (290)
Q Consensus 85 ~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~----~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 154 (290)
.+++++++.. | .+...+++.+...++. |++|..+....+. +.++..+++=++++++
T Consensus 277 PiYqA~~~~~--~-----~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~-------~~v~~~~~R~tgIVSR 336 (607)
T PRK09284 277 PIYQALEKVN--G-----VAEDLTWEIFRDTLIEQAEQGVDYFTIHAGVLL-------RYVPLTAKRVTGIVSR 336 (607)
T ss_pred cHHHHHHHhc--C-----ChhhCCHHHHHHHHHHHHHhCCCEEEEChhhHH-------HHHHHHhCcccCcccC
Confidence 5666666554 2 4456777777666655 6666655555543 5666666555666654
No 256
>PF14502 HTH_41: Helix-turn-helix domain
Probab=24.28 E-value=87 Score=19.99 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCC--hHHHHHHHHHhCCCcc
Q 022904 206 QTLKRIASKHGVS--IPVVAVRYILDQPAVA 234 (290)
Q Consensus 206 ~~l~~la~~~g~s--~~~~al~~~l~~~~v~ 234 (290)
+.+.+++++++++ ..|-||+++...+.|.
T Consensus 7 ~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 7 PTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred CCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 6788899999886 6899999999998765
No 257
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=24.19 E-value=5.8e+02 Score=23.63 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc----CC-
Q 022904 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GI- 120 (290)
Q Consensus 46 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~----~~- 120 (290)
..+.+.+++-+.+.|.+.|++. ++.-..-+-|+..- ..|+.+|....+..+++. ++
T Consensus 5 ~~~~e~L~~~~~~vl~~~G~~e----------------e~A~~vA~~lv~ad---~~G~~SHGv~r~p~yi~~l~~G~i~ 65 (349)
T COG2055 5 KVSAEELKALIEEVLRKAGVPE----------------EDARAVADVLVAAD---LRGVDSHGVGRLPGYVRRLKAGKIN 65 (349)
T ss_pred EecHHHHHHHHHHHHHHcCCCH----------------HHHHHHHHHHHHHH---hcCCcccchHHHHHHHHHHHcCCcC
Confidence 4578999999999999999741 22222222233222 267788887777776664 11
Q ss_pred ---Ceeeeecccccc--cc----------ChhhhHHHHHHHhCCeEEe
Q 022904 121 ---PVVSNQVQHSVV--DM----------RPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 121 ---~~~~~q~~~n~~--~~----------~~~~~~~~~~~~~gi~via 153 (290)
.+.+++.-=... |- ......++.|+++||++++
T Consensus 66 ~~a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~va 113 (349)
T COG2055 66 PDAEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVA 113 (349)
T ss_pred CCCceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEE
Confidence 122222111111 11 1135689999999999886
No 258
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=24.10 E-value=3.8e+02 Score=21.51 Aligned_cols=91 Identities=12% Similarity=0.049 Sum_probs=47.1
Q ss_pred CcEEEEec-cCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHH---HcCCccEEEccC-
Q 022904 32 SSWISLTK-WVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK---EEGKIKTVALTN- 106 (290)
Q Consensus 32 ~~~~i~tK-~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~---~~G~ir~iGvs~- 106 (290)
-.+.|+|- -.......+.+.+.+.+++.|+.+|.+...++..|......+.-+-...+++++. +...+-+||=+.
T Consensus 59 ~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~ 138 (166)
T TIGR01664 59 YKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPIQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAG 138 (166)
T ss_pred CEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCCC
Confidence 44666664 3222223456777788899999999976333333322122231223334444442 334566777332
Q ss_pred ----CCHHHHHHHHHcCCCe
Q 022904 107 ----FDTERLRIILENGIPV 122 (290)
Q Consensus 107 ----~~~~~l~~~~~~~~~~ 122 (290)
+....++.+...|+++
T Consensus 139 ~~~~~~~~Di~aA~~aGi~~ 158 (166)
T TIGR01664 139 RKLDFSDADIKFAKNLGLEF 158 (166)
T ss_pred CCCCCchhHHHHHHHCCCCc
Confidence 1234566665555443
No 259
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=24.05 E-value=5.3e+02 Score=23.20 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=31.4
Q ss_pred HHHHHHHcCCc--cEEEccCCCHHHHHHHHHcCCCeeeeeccccccccChhhhHHHHHHHhCCeEEecccc
Q 022904 89 HLTDLKEEGKI--KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 89 ~l~~L~~~G~i--r~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 157 (290)
.|+.|++.|.- -+||+-+++.+.+...+..+..+ ..-.+.++.+++.||.+.++--+
T Consensus 119 ~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~------------~~~~~ai~~~~~~Gi~v~~~~i~ 177 (313)
T TIGR01210 119 KLEELRKIGVNVEVAVGLETANDRIREKSINKGSTF------------EDFIRAAELARKYGAGVKAYLLF 177 (313)
T ss_pred HHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCH------------HHHHHHHHHHHHcCCcEEEEEEe
Confidence 34445555652 45666666666664333322111 11235778888899987776433
No 260
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=23.89 E-value=5.2e+02 Score=23.34 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=65.4
Q ss_pred CCccEEEccCCCHHHHHHHHHc---CCCeeeeeccccccccCh---hhhHHHHHHHhCCeEEeccccccccccccccCCC
Q 022904 97 GKIKTVALTNFDTERLRIILEN---GIPVVSNQVQHSVVDMRP---QQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTN 170 (290)
Q Consensus 97 G~ir~iGvs~~~~~~l~~~~~~---~~~~~~~q~~~n~~~~~~---~~~~~~~~~~~gi~via~spl~~G~L~~~~~~~~ 170 (290)
.++-.+-=++.+.+.+..+.+. .. +.+.-..+|-+.... +..+.+++++-+.-++. ||.=+.
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~-~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVV-----Gg~~Ss------ 223 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERF-PEIQGPPKDDICYATQNRQEAVKELAPQADLVIVV-----GSKNSS------ 223 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhC-cCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEE-----CCCCCc------
Confidence 5555566667778877777765 22 111111223222221 34677888877765554 231110
Q ss_pred CCCCCCCCCCCCcchhHhhhhhhccCCchhHHHHHHHHHHHHHHcCC------ChHHHHHHHHHhCCCcceeeecCCCCC
Q 022904 171 LSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGL 244 (290)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~------s~~~~al~~~l~~~~v~~~i~g~~~~~ 244 (290)
+ -..|.++|++.+. ++.++-..|+.... ...+..|+| +
T Consensus 224 --N-------------------------------T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGAS--T 267 (298)
T PRK01045 224 --N-------------------------------SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGAS--A 267 (298)
T ss_pred --c-------------------------------HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCC--C
Confidence 1 1678888888764 78899999997765 456688999 9
Q ss_pred HhHHHHhH
Q 022904 245 AEHIQDTN 252 (290)
Q Consensus 245 ~~~l~enl 252 (290)
|+.+-+.+
T Consensus 268 P~~li~eV 275 (298)
T PRK01045 268 PEWLVQEV 275 (298)
T ss_pred CHHHHHHH
Confidence 99865544
No 261
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=23.61 E-value=3.6e+02 Score=21.08 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=14.5
Q ss_pred hhHHHHHHHhCCeEEeccc
Q 022904 138 QKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 138 ~~~~~~~~~~gi~via~sp 156 (290)
..+++.++++|..++-.++
T Consensus 91 ~~li~~~~~~~~~vil~~~ 109 (177)
T cd01822 91 RQMIETAQARGAPVLLVGM 109 (177)
T ss_pred HHHHHHHHHCCCeEEEEec
Confidence 4688888888888876543
No 262
>PRK10060 RNase II stability modulator; Provisional
Probab=23.57 E-value=6.6e+02 Score=25.19 Aligned_cols=115 Identities=10% Similarity=0.130 Sum_probs=71.6
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCC-CCccHHHHHHHHHHHHHcCCccEEEccCCC--H
Q 022904 33 SWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY-SNPGYLDALNHLTDLKEEGKIKTVALTNFD--T 109 (290)
Q Consensus 33 ~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~-~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~--~ 109 (290)
.+.|+-.+++. .+..+.+...+.+.|++.+.+. ..+.|-=... .......+...+..|++.|- .|++.+|+ .
T Consensus 492 ~~~i~vNls~~--~l~~~~~~~~l~~~l~~~~~~~-~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~--~ialDdfGtg~ 566 (663)
T PRK10060 492 NLRVAVNVSAR--QLADQTIFTALKQALQELNFEY-CPIDVELTESCLIENEELALSVIQQFSQLGA--QVHLDDFGTGY 566 (663)
T ss_pred CeEEEEEcCHH--HhCCCcHHHHHHHHHHHHCcCc-ceEEEEECCchhhcCHHHHHHHHHHHHHCCC--EEEEECCCCch
Confidence 45566666542 2233567777778888877642 2233322211 11225678899999999998 46777664 4
Q ss_pred HHHHHHHHcCCCeeeeecccccccc--------ChhhhHHHHHHHhCCeEEec
Q 022904 110 ERLRIILENGIPVVSNQVQHSVVDM--------RPQQKMAELCQLTGVKLITY 154 (290)
Q Consensus 110 ~~l~~~~~~~~~~~~~q~~~n~~~~--------~~~~~~~~~~~~~gi~via~ 154 (290)
..+..+.. .+++++-+.-+.+.. ..-+.++..|+..|+.+++=
T Consensus 567 ssl~~L~~--l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAe 617 (663)
T PRK10060 567 SSLSQLAR--FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAE 617 (663)
T ss_pred hhHHHHHh--CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEe
Confidence 66666664 567766666544322 12356899999999999984
No 263
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=23.57 E-value=4.5e+02 Score=22.58 Aligned_cols=19 Identities=11% Similarity=0.391 Sum_probs=16.8
Q ss_pred hhhHHHHHHHhCCeEEecc
Q 022904 137 QQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 137 ~~~~~~~~~~~gi~via~s 155 (290)
..++++.++++|+.|.+|.
T Consensus 198 ~~~~v~~~~~~g~~v~~WT 216 (249)
T PRK09454 198 DEARVAALKAAGLRILVYT 216 (249)
T ss_pred CHHHHHHHHHCCCEEEEEe
Confidence 4579999999999999995
No 264
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=23.55 E-value=3.3e+02 Score=26.50 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=10.4
Q ss_pred hhHHHHHHHhCCeEEe
Q 022904 138 QKMAELCQLTGVKLIT 153 (290)
Q Consensus 138 ~~~~~~~~~~gi~via 153 (290)
.++...|+++||.+|+
T Consensus 41 ~el~~aaqalGIk~I~ 56 (571)
T KOG1185|consen 41 IELAVAAQALGIKFIG 56 (571)
T ss_pred HHHHHHHHHcCCeEee
Confidence 3566666667777665
No 265
>cd03681 MM_CoA_mutase_MeaA Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, MeaA-like subfamily; contains various methylmalonyl coenzyme A (CoA) mutase (MCM)-like proteins similar to the Streptomyces cinnamonensis MeaA, Methylobacterium extorquens MeaA and Streptomyces collinus B12-dependent mutase. Members of this subfamily contain an N-terminal MCM domain and a C-terminal coenzyme B12 binding domain. S. cinnamonensis MeaA is a putative B12-dependent mutase which provides methylmalonyl-CoA precursors for the biosynthesis of the monensin polyketide via an unknown pathway. S. collinus B12-dependent mutase may be involved in a pathway for acetate assimilation.
Probab=23.55 E-value=1.9e+02 Score=27.31 Aligned_cols=89 Identities=12% Similarity=0.156 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhhhCCC----cccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCee
Q 022904 48 TSSIVRESIDVSRRRMDVP----CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV 123 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d----~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~ 123 (290)
+++...+.+...|++ |.+ .+|+--.+..|++.+ ...|.|...|++-.+.+.++.+.+ +++.+
T Consensus 12 t~ee~N~~~~~~L~~-G~t~ls~afD~~t~~G~D~d~p------------~~~gevG~~Gv~i~s~~Dm~~L~~-gI~L~ 77 (407)
T cd03681 12 TAEESNELYRKNLAK-GQTGLSVAFDLPTQTGYDSDHI------------LAKGEVGKVGVPINHLGDMRILFN-QIPLE 77 (407)
T ss_pred CHHHHHHHHHHHHHC-CCCeeEEeeccccccCCCCCcc------------cccccccCcCCCcCCHHHHHHHHc-CCCcc
Confidence 677777777777766 433 345555566666666 246888889999989999999998 77766
Q ss_pred eeeccccccccCh--hhhHHHHHHHhCCe
Q 022904 124 SNQVQHSVVDMRP--QQKMAELCQLTGVK 150 (290)
Q Consensus 124 ~~q~~~n~~~~~~--~~~~~~~~~~~gi~ 150 (290)
-+-+.++...... -.-++..+.++|+.
T Consensus 78 ~v~~s~t~~a~a~~lla~~~a~ae~~g~~ 106 (407)
T cd03681 78 QMNTSMTINATAMWLLSLYVAVAEEQGAD 106 (407)
T ss_pred cceeEEEeCCcHHHHHHHHHHHHHHcCCC
Confidence 5555555321111 12356777887764
No 266
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=23.44 E-value=5.9e+02 Score=23.49 Aligned_cols=80 Identities=9% Similarity=0.058 Sum_probs=39.1
Q ss_pred EEEeccCCCC------CCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCC
Q 022904 35 ISLTKWVPPP------VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD 108 (290)
Q Consensus 35 ~i~tK~~~~~------~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~ 108 (290)
+|..|+++.. ...+.+.....+-+-|+..|+|+|++-.-+... ... +. ....+.+++.=.+--+++..++
T Consensus 227 ~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~-~~~-~~--~~~~~~ik~~~~~pv~~~G~~~ 302 (362)
T PRK10605 227 RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAG-GEP-YS--DAFREKVRARFHGVIIGAGAYT 302 (362)
T ss_pred eEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccC-Ccc-cc--HHHHHHHHHHCCCCEEEeCCCC
Confidence 4888887531 124555533445556677788888775322111 111 11 1112333332122234444457
Q ss_pred HHHHHHHHHc
Q 022904 109 TERLRIILEN 118 (290)
Q Consensus 109 ~~~l~~~~~~ 118 (290)
++..+.+++.
T Consensus 303 ~~~ae~~i~~ 312 (362)
T PRK10605 303 AEKAETLIGK 312 (362)
T ss_pred HHHHHHHHHc
Confidence 7777777764
No 267
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=23.43 E-value=4e+02 Score=23.64 Aligned_cols=92 Identities=13% Similarity=0.062 Sum_probs=55.2
Q ss_pred ChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHH
Q 022904 12 GLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLT 91 (290)
Q Consensus 12 G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~ 91 (290)
|.+=.+|-.++ ..+..-..+++=--- .++ .-..+...++|.++|+.||+++=.-.+ .....++.-.++++
T Consensus 16 G~~rtAL~n~l---~Ar~~gG~~iLRiED-tD~-~R~~~~~~~~I~~dL~wLGl~wDe~~~-----~QS~r~~~Y~~~~~ 85 (272)
T TIGR03838 16 GSLVAALGSYL---DARAHGGRWLVRIED-LDP-PREVPGAADDILRTLEAYGLHWDGEVV-----YQSQRHALYQAALD 85 (272)
T ss_pred HHHHHHHHHHH---HHHHhCCEEEEEeCc-CCC-CCCChHHHHHHHHHHHHcCCCCCCCee-----eeeCCHHHHHHHHH
Confidence 67777777633 333222333332111 111 224466778899999999997532211 22333667778889
Q ss_pred HHHHcCCccEEEccCCCHHHHHHHH
Q 022904 92 DLKEEGKIKTVALTNFDTERLRIIL 116 (290)
Q Consensus 92 ~L~~~G~ir~iGvs~~~~~~l~~~~ 116 (290)
+|.++|++ |...| +.+.++...
T Consensus 86 ~L~~~G~a-Y~C~C--t~eel~~~~ 107 (272)
T TIGR03838 86 RLLAAGLA-YPCQC--TRKEIAAAA 107 (272)
T ss_pred HHHHcCCE-EecCC--CHHHHHHHh
Confidence 99999997 66666 677776663
No 268
>PRK05588 histidinol-phosphatase; Provisional
Probab=23.21 E-value=4.9e+02 Score=22.42 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=15.0
Q ss_pred HHHHHHHHhhhCCCcccEEEEecCC
Q 022904 53 RESIDVSRRRMDVPCLDMLQFHWWD 77 (290)
Q Consensus 53 ~~~~~~SL~~Lg~d~iDl~~lH~p~ 77 (290)
...+++.|++.+.|++ +.-+|..+
T Consensus 80 ~~~~~~~l~~~~~D~v-igSvH~~~ 103 (255)
T PRK05588 80 IEENKELINKYEFDYV-IGSIHLVD 103 (255)
T ss_pred HHHHHHHHhhCCCCeE-EEeEEeeC
Confidence 3444556666666666 68888754
No 269
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=22.93 E-value=1.4e+02 Score=26.95 Aligned_cols=47 Identities=15% Similarity=0.069 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCc
Q 022904 49 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI 99 (290)
Q Consensus 49 ~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~i 99 (290)
.+...+.+.+.+++||++ +|.+.-.. +......+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~tt---~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRTT---SPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeCC---CHHHHHHHHHHHHHHHHCCCE
Confidence 366778889999999996 68653321 112245788999999999998
No 270
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=22.92 E-value=5.2e+02 Score=22.62 Aligned_cols=73 Identities=15% Similarity=0.084 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc
Q 022904 45 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 118 (290)
Q Consensus 45 ~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~ 118 (290)
...+.+.-.+-.+=.++-+++++|-|=.+-+++.-.++.-+++++-|.|+++|=+- +=-++-++-..+++.+.
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~V-lPY~~dD~v~arrLee~ 150 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVV-LPYTTDDPVLARRLEEA 150 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEE-eeccCCCHHHHHHHHhc
Confidence 35688888888899999999999999999888877777889999999999999753 33445556666666654
No 271
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=22.90 E-value=5.7e+02 Score=23.24 Aligned_cols=107 Identities=7% Similarity=-0.068 Sum_probs=0.0
Q ss_pred hhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHH
Q 022904 14 LKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDL 93 (290)
Q Consensus 14 sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L 93 (290)
+...+...++.+.+.+.-..+-|.|+.... .+..+...+-+.|++.|...+.+..+-.+....+ ++.++++.|
T Consensus 174 ~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~----~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei~~---~~~~ai~~L 246 (331)
T TIGR00238 174 KDHELEWLLKRLEEIPHLVRLRIGTRLPVV----IPQRITDELCELLASFELQLMLVTHINHCNEITE---EFAEAMKKL 246 (331)
T ss_pred CHHHHHHHHHHHHhcCCccEEEeecCCCcc----CchhcCHHHHHHHHhcCCcEEEEccCCChHhCCH---HHHHHHHHH
Q ss_pred HHcCCccEEEcc-----CCCHHHHHHHHHc----CCCeeeeec
Q 022904 94 KEEGKIKTVALT-----NFDTERLRIILEN----GIPVVSNQV 127 (290)
Q Consensus 94 ~~~G~ir~iGvs-----~~~~~~l~~~~~~----~~~~~~~q~ 127 (290)
++.|..-.+=.. |.+.+.+.++.+. ++.+-+.+.
T Consensus 247 ~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~pyyl~~ 289 (331)
T TIGR00238 247 RTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGIIPYYLHY 289 (331)
T ss_pred HHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCeecCeecC
No 272
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=22.78 E-value=4.8e+02 Score=24.32 Aligned_cols=79 Identities=10% Similarity=0.084 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeeeeccccccccCh-hhhHHHHHHHhCCeEEeccccccccc
Q 022904 84 LDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGLL 162 (290)
Q Consensus 84 ~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~via~spl~~G~L 162 (290)
......+..+...+.++..-+...+.+.+..++..+.+..++..+-|+.-.-. -..+.+.|+++|+.++.=..++.|.+
T Consensus 103 ~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~ 182 (388)
T PRK08861 103 GGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVL 182 (388)
T ss_pred HHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccc
Confidence 34445554444444354444455567777776643456666666777643322 35789999999999987777666543
No 273
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=22.75 E-value=6e+02 Score=23.29 Aligned_cols=74 Identities=11% Similarity=0.008 Sum_probs=58.4
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc
Q 022904 44 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 118 (290)
Q Consensus 44 ~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~ 118 (290)
...++.+...+-.+-+++-+++++|-|=.+.......++..+++++.+.|.++|..-. =+|+-++...+++...
T Consensus 144 ag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~-~yc~~d~~~a~~l~~~ 217 (326)
T PRK11840 144 AGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVM-VYCSDDPIAAKRLEDA 217 (326)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHhc
Confidence 3467888888888889998899999998888777777778899999999999998742 4455566666666653
No 274
>PRK09694 helicase Cas3; Provisional
Probab=22.62 E-value=7.9e+02 Score=25.92 Aligned_cols=138 Identities=12% Similarity=0.139 Sum_probs=75.4
Q ss_pred CCChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccH------
Q 022904 10 GMGLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGY------ 83 (290)
Q Consensus 10 g~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~------ 83 (290)
|.|+.|..+-.+. .+...+..+.++++.=. .-+...+.+.+.+.++++-. ..++.++|.-......+
T Consensus 311 GsGKTEAAL~~A~-~l~~~~~~~gi~~aLPT-----~Atan~m~~Rl~~~~~~~f~-~~~v~L~Hg~a~l~~~~~~~~~~ 383 (878)
T PRK09694 311 GSGKTEAALAYAW-RLIDQGLADSIIFALPT-----QATANAMLSRLEALASKLFP-SPNLILAHGNSRFNHLFQSLKSR 383 (878)
T ss_pred CCCHHHHHHHHHH-HHHHhCCCCeEEEECcH-----HHHHHHHHHHHHHHHHHhcC-CCceEeecCcchhhhhhhhhhcc
Confidence 8899999988544 34344556778877432 11445666666666666543 35788999742211100
Q ss_pred -------HH----HHHHHHHHHHcCCccEEEccCCCHHHHHHH-H-------Hc----CCCeeeeeccccccccCh---h
Q 022904 84 -------LD----ALNHLTDLKEEGKIKTVALTNFDTERLRII-L-------EN----GIPVVSNQVQHSVVDMRP---Q 137 (290)
Q Consensus 84 -------~~----~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~-~-------~~----~~~~~~~q~~~n~~~~~~---~ 137 (290)
.+ .-+.+.+..+++...-|+|+ +.+|+-.. + .. +--+.+-.++ ..+... -
T Consensus 384 ~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~--TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVH--AyD~ym~~lL 459 (878)
T PRK09694 384 AATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVC--TIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVH--AYDAYMYGLL 459 (878)
T ss_pred cccccccchhhhHHHHHHhhhhhhhhcCCEEEc--CHHHHHHHHHccchHHHHHHhhccCeEEEechh--hCCHHHHHHH
Confidence 11 12344445566677789999 44554421 1 11 1112222222 222221 2
Q ss_pred hhHHHHHHHhCCeEEeccccc
Q 022904 138 QKMAELCQLTGVKLITYGTVM 158 (290)
Q Consensus 138 ~~~~~~~~~~gi~via~spl~ 158 (290)
..+++++.+.|..+|-+|.--
T Consensus 460 ~~~L~~l~~~g~~vIllSATL 480 (878)
T PRK09694 460 EAVLKAQAQAGGSVILLSATL 480 (878)
T ss_pred HHHHHHHHhcCCcEEEEeCCC
Confidence 457788888899888877653
No 275
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=22.60 E-value=1.3e+02 Score=24.29 Aligned_cols=45 Identities=31% Similarity=0.238 Sum_probs=33.5
Q ss_pred ccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHH
Q 022904 68 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 116 (290)
Q Consensus 68 iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~ 116 (290)
=|++++-+..... .++.++++.+++.| ++-|++++.....+..+.
T Consensus 102 ~Dv~I~iS~SG~t---~~~i~~~~~ak~~G-a~vI~IT~~~~s~La~~a 146 (177)
T cd05006 102 GDVLIGISTSGNS---PNVLKALEAAKERG-MKTIALTGRDGGKLLELA 146 (177)
T ss_pred CCEEEEEeCCCCC---HHHHHHHHHHHHCC-CEEEEEeCCCCCchhhhC
Confidence 3888887765544 48889999999998 889999987655555553
No 276
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=22.59 E-value=2e+02 Score=26.95 Aligned_cols=48 Identities=17% Similarity=0.429 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHc----CCCeeeeeccccccccCh-----hhhHHHHHHHhCCeEEe
Q 022904 106 NFDTERLRIILEN----GIPVVSNQVQHSVVDMRP-----QQKMAELCQLTGVKLIT 153 (290)
Q Consensus 106 ~~~~~~l~~~~~~----~~~~~~~q~~~n~~~~~~-----~~~~~~~~~~~gi~via 153 (290)
|++.+.+++++.. ++|+.+.-+.-|..-.++ -+++.+.|++.||.|+-
T Consensus 168 d~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~ 224 (471)
T COG3033 168 NFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVM 224 (471)
T ss_pred ccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEe
Confidence 5677778888776 467777777777665544 46789999999999985
No 277
>PRK14847 hypothetical protein; Provisional
Probab=22.46 E-value=6e+02 Score=23.36 Aligned_cols=106 Identities=11% Similarity=0.040 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCC----ccEEEccCCCHHHHHHHHHc--C
Q 022904 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK----IKTVALTNFDTERLRIILEN--G 119 (290)
Q Consensus 46 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~----ir~iGvs~~~~~~l~~~~~~--~ 119 (290)
.++.+. +-.+-+.|.++|+|.|. +-.|... .+-.++..++.+.|+ ++-.+++-...+.++..++. +
T Consensus 50 ~fs~ee-Kl~IA~~L~~lGVd~IE---vG~Pa~s----~~e~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~ 121 (333)
T PRK14847 50 PMDGAR-KLRLFEQLVAVGLKEIE---VAFPSAS----QTDFDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAG 121 (333)
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEE---eeCCCCC----HHHHHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCC
Confidence 345554 44567779999976554 4455332 334667777777764 56677777778877777776 2
Q ss_pred C--CeeeeeccccccccC------h------hhhHHHHHHHhCC---e---EEecccccc
Q 022904 120 I--PVVSNQVQHSVVDMR------P------QQKMAELCQLTGV---K---LITYGTVMG 159 (290)
Q Consensus 120 ~--~~~~~q~~~n~~~~~------~------~~~~~~~~~~~gi---~---via~spl~~ 159 (290)
. +...+-++-|.++.. . -.+.+.+++++|. + .+.+++-..
T Consensus 122 ~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDa 181 (333)
T PRK14847 122 SPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETF 181 (333)
T ss_pred CCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecC
Confidence 2 334444444443322 1 2456789999955 2 366666543
No 278
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=22.43 E-value=3.5e+02 Score=23.79 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=16.1
Q ss_pred hhHHHHHHHhCCeEEeccc
Q 022904 138 QKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 138 ~~~~~~~~~~gi~via~sp 156 (290)
.++++.++++|+.|.+|.+
T Consensus 248 ~~~v~~~~~~Gl~v~~wTv 266 (290)
T cd08607 248 PSQIELAKSLGLVVFCWGD 266 (290)
T ss_pred hHHHHHHHHcCCEEEEECC
Confidence 4688899999999999875
No 279
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=22.36 E-value=6.1e+02 Score=23.24 Aligned_cols=138 Identities=14% Similarity=0.142 Sum_probs=72.3
Q ss_pred hhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCcc---HHHHHHHH
Q 022904 14 LKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG---YLDALNHL 90 (290)
Q Consensus 14 sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~---~~~~~~~l 90 (290)
.|+.+- ++.+...+.+.+-++|.|=+.+.- -.+++..-+++.-+..+ +.++.+|.+...... .+.++.+|
T Consensus 65 ~e~l~~-~i~~~~~~~~p~~i~v~~tc~~~l---iGdDi~~v~~~~~~~~~---~~vv~~~~~gf~~~~~~G~~~a~~~~ 137 (399)
T cd00316 65 GEKLLE-AIINELKRYKPKVIFVYTTCTTEL---IGDDIEAVAKEASKEIG---IPVVPASTPGFRGSQSAGYDAAVKAI 137 (399)
T ss_pred HHHHHH-HHHHHHHHcCCCEEEEecCchhhh---hccCHHHHHHHHHHhhC---CceEEeeCCCCcccHHHHHHHHHHHH
Confidence 455444 444554544446677777775532 22444444444433443 688899988666321 23444444
Q ss_pred HHHHH---------cCCccEEEccCC---CHHHHHHHHHc-CCCeeeeec--------------cccccccC-hhhhHHH
Q 022904 91 TDLKE---------EGKIKTVALTNF---DTERLRIILEN-GIPVVSNQV--------------QHSVVDMR-PQQKMAE 142 (290)
Q Consensus 91 ~~L~~---------~G~ir~iGvs~~---~~~~l~~~~~~-~~~~~~~q~--------------~~n~~~~~-~~~~~~~ 142 (290)
.+... ++.|--||.++. +.+.+..+++. ++.+..+-. .+|+.... ....+.+
T Consensus 138 ~~~~~~~~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~~~~A~~nlv~~~~~g~~~a~ 217 (399)
T cd00316 138 IDHLVGTAEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGTTVEELRELGNAKLNLVLCRESGLYLAR 217 (399)
T ss_pred HHHHhcccCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCCCCHHHHHhhccCcEEEEecHhHHHHHHH
Confidence 43322 345777888876 45777777774 443332221 12222111 1233455
Q ss_pred HHHHh-CCeEEeccccc
Q 022904 143 LCQLT-GVKLITYGTVM 158 (290)
Q Consensus 143 ~~~~~-gi~via~spl~ 158 (290)
+.+++ |+.++...|++
T Consensus 218 ~l~~~~g~p~~~~~p~G 234 (399)
T cd00316 218 YLEEKYGIPYILINPIG 234 (399)
T ss_pred HHHHHhCCCeEEeCCcC
Confidence 55544 88888766664
No 280
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=22.22 E-value=4.4e+02 Score=25.97 Aligned_cols=74 Identities=23% Similarity=0.223 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCee-eeeccccccccChhhhHHHHHHHhCCeEEecccccc
Q 022904 83 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVV-SNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMG 159 (290)
Q Consensus 83 ~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~-~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~ 159 (290)
..++.+.+-+.++..+|+.+|+..+....+...++. +++++ +-|.-+++ ..+ -.-++..-..|.-+..-.|+..
T Consensus 412 ~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l--~~~-~k~~e~~~~~g~i~~~dnp~m~ 487 (546)
T COG4626 412 YAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKL--SGA-IKTIERKLAEGVLVHGDNPLME 487 (546)
T ss_pred HHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhh--Cch-hHHHHHHHhcCcEEECCCcHHh
Confidence 579999999999999999999999988888777775 66633 34554444 222 2345666666777776666654
No 281
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=22.14 E-value=4.3e+02 Score=21.38 Aligned_cols=60 Identities=17% Similarity=0.066 Sum_probs=34.6
Q ss_pred CccEEEccCCCHHHHH------HHHHc--CCCeeeeeccccccccC-------h------hhhHHHHHHHhCCeEEeccc
Q 022904 98 KIKTVALTNFDTERLR------IILEN--GIPVVSNQVQHSVVDMR-------P------QQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 98 ~ir~iGvs~~~~~~l~------~~~~~--~~~~~~~q~~~n~~~~~-------~------~~~~~~~~~~~gi~via~sp 156 (290)
.|...|++..+..++. .+... ..+..++++-.|=.... . -..+++.++++|+.++-.+|
T Consensus 36 ~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp 115 (198)
T cd01821 36 TVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTP 115 (198)
T ss_pred EEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 4556677776655432 23322 23355555554422221 1 24688889999999888776
Q ss_pred c
Q 022904 157 V 157 (290)
Q Consensus 157 l 157 (290)
.
T Consensus 116 ~ 116 (198)
T cd01821 116 V 116 (198)
T ss_pred c
Confidence 5
No 282
>PLN02438 inositol-3-phosphate synthase
Probab=22.02 E-value=4.4e+02 Score=25.70 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhhhCCCcccEEEEecCCCCCc---cHHHHHHHHHHHHHcCC
Q 022904 49 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP---GYLDALNHLTDLKEEGK 98 (290)
Q Consensus 49 ~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~---~~~~~~~~l~~L~~~G~ 98 (290)
.+.|++.|++-.++-|+|++=++..-+-.+..+ ...+.+++|++..+++.
T Consensus 206 ve~ir~DIr~Fk~~n~ld~vVVlwtAsTEr~~~~~~~~~~t~~~l~~ai~~~~ 258 (510)
T PLN02438 206 MDQIRKDIREFKEKNKVDKVVVLWTANTERYSNVVVGLNDTMENLLASIEKDE 258 (510)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcCCCcccCCHHHHHHHHhcCC
Confidence 478888888888888998866666555322211 24577888888888765
No 283
>PRK09389 (R)-citramalate synthase; Provisional
Probab=22.00 E-value=6.9e+02 Score=24.19 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCC-ccEEEccCCCHHHHHHHHHcCCCeee
Q 022904 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 124 (290)
Q Consensus 46 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~ 124 (290)
.++.+.-.+-+ +.|.++|+|+|.+-+ |... ..-++++..+.+.++ .+-.+++......++.+.+.+.+...
T Consensus 20 ~~s~e~K~~ia-~~L~~~Gv~~IE~G~---p~~~----~~d~e~v~~i~~~~~~~~i~a~~r~~~~di~~a~~~g~~~v~ 91 (488)
T PRK09389 20 SLTPEEKLEIA-RKLDELGVDVIEAGS---AITS----EGEREAIKAVTDEGLNAEICSFARAVKVDIDAALECDVDSVH 91 (488)
T ss_pred CcCHHHHHHHH-HHHHHcCCCEEEEeC---CcCC----HHHHHHHHHHHhcCCCcEEEeecccCHHHHHHHHhCCcCEEE
Confidence 45666655544 459999999888864 3211 233455666665443 44445555557778888876555443
Q ss_pred eeccccccccC------h------hhhHHHHHHHhCCeEE
Q 022904 125 NQVQHSVVDMR------P------QQKMAELCQLTGVKLI 152 (290)
Q Consensus 125 ~q~~~n~~~~~------~------~~~~~~~~~~~gi~vi 152 (290)
+-+.-|..+.. . -.+.+++|+++|..+.
T Consensus 92 i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~ 131 (488)
T PRK09389 92 LVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVE 131 (488)
T ss_pred EEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 44444433221 1 2356788999987654
No 284
>PRK10551 phage resistance protein; Provisional
Probab=21.95 E-value=6.1e+02 Score=24.69 Aligned_cols=115 Identities=9% Similarity=0.088 Sum_probs=70.3
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEE-EecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCC--
Q 022904 32 SSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD-- 108 (290)
Q Consensus 32 ~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~-lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~-- 108 (290)
.++.|+-.+.+. .+..+.+...+.+.++.++.+..-+.+ +........ ......++.|++.|- .|.+.+|+
T Consensus 348 ~~~~lsINis~~--~l~~~~f~~~l~~~l~~~~~~~~~LvlEItE~~~~~~--~~~~~~l~~Lr~~G~--~ialDDFGtg 421 (518)
T PRK10551 348 VGAKLGINISPA--HLHSDSFKADVQRLLASLPADHFQIVLEITERDMVQE--EEATKLFAWLHSQGI--EIAIDDFGTG 421 (518)
T ss_pred CCcEEEEEeCHH--HHCCchHHHHHHHHHHhCCCCcceEEEEEechHhcCC--HHHHHHHHHHHHCCC--EEEEECCCCC
Confidence 345666666543 233466778888889888876433222 333222122 356678899999998 46666553
Q ss_pred HHHHHHHHHcCCCeeeeeccccccccC--------hhhhHHHHHHHhCCeEEec
Q 022904 109 TERLRIILENGIPVVSNQVQHSVVDMR--------PQQKMAELCQLTGVKLITY 154 (290)
Q Consensus 109 ~~~l~~~~~~~~~~~~~q~~~n~~~~~--------~~~~~~~~~~~~gi~via~ 154 (290)
...+..+.. .+++++-+.-+..+.- .-..+++.|++.|+.+++=
T Consensus 422 ~ssl~~L~~--l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAE 473 (518)
T PRK10551 422 HSALIYLER--FTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAE 473 (518)
T ss_pred chhHHHHHh--CCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 455555553 4566666554433221 1246899999999999884
No 285
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=21.85 E-value=7e+02 Score=23.78 Aligned_cols=111 Identities=10% Similarity=0.017 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCC---CHHHHHHHHHcCCCe
Q 022904 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF---DTERLRIILENGIPV 122 (290)
Q Consensus 46 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~---~~~~l~~~~~~~~~~ 122 (290)
..+++.+.+.+++..+.++ .++.+-+-.|.......+.+++.|..++++..=..+.+++- .++.++++.+.+ +
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~g--v 134 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLG--V 134 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCC--C
Confidence 3678899999888877652 35666666643222212567888889988721124666542 267788887643 4
Q ss_pred eeeeccccccccChh---------------------------hhHHHHHHHhCCeEEeccccccc
Q 022904 123 VSNQVQHSVVDMRPQ---------------------------QKMAELCQLTGVKLITYGTVMGG 160 (290)
Q Consensus 123 ~~~q~~~n~~~~~~~---------------------------~~~~~~~~~~gi~via~spl~~G 160 (290)
+.+.+.++.++...- .+-++.+.+.|+.+....++-.|
T Consensus 135 d~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 135 GHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred CeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 555666665432111 12345677788888877777555
No 286
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=21.68 E-value=3.3e+02 Score=27.15 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEE---EEecCCCCCccHHHHHHHHHHHHHcC-CccE---------EEccCCCHHHHH
Q 022904 47 MTSSIVRESIDVSRRRMDVPCLDML---QFHWWDYSNPGYLDALNHLTDLKEEG-KIKT---------VALTNFDTERLR 113 (290)
Q Consensus 47 ~~~~~i~~~~~~SL~~Lg~d~iDl~---~lH~p~~~~~~~~~~~~~l~~L~~~G-~ir~---------iGvs~~~~~~l~ 113 (290)
++.+.... +-..|.+.|++.|.+. -++..-. .. .++-|+.|..+++.. .++. +|.+++..+.++
T Consensus 23 ~~t~d~l~-ia~~l~~~G~~~iE~~ggatfd~~~r-fl-~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~ 99 (592)
T PRK09282 23 MRTEDMLP-IAEKLDKVGFWSLEVWGGATFDVCIR-YL-NEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVE 99 (592)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEecCCccchhhcc-cC-CccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhH
Confidence 34455544 5555888899988884 1110000 01 146688888888763 3332 455555544444
Q ss_pred HHHHc--CCCeeeeeccccccccChhhhHHHHHHHhCCeEEe
Q 022904 114 IILEN--GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 114 ~~~~~--~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
..++. .-.++++.+...+.+...-...+++++++|..+.+
T Consensus 100 ~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~ 141 (592)
T PRK09282 100 KFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQG 141 (592)
T ss_pred HHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEE
Confidence 44433 22355555655554444445678999999987764
No 287
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=21.67 E-value=4e+02 Score=20.83 Aligned_cols=60 Identities=8% Similarity=-0.001 Sum_probs=36.9
Q ss_pred cEEEEec-cCCCCCCCCHHHHHHHHHHHHhh----hCCC----------cccEEEEecCCCCC-ccHHHHHHHHHHHHH
Q 022904 33 SWISLTK-WVPPPVKMTSSIVRESIDVSRRR----MDVP----------CLDMLQFHWWDYSN-PGYLDALNHLTDLKE 95 (290)
Q Consensus 33 ~~~i~tK-~~~~~~~~~~~~i~~~~~~SL~~----Lg~d----------~iDl~~lH~p~~~~-~~~~~~~~~l~~L~~ 95 (290)
.|.|+-| ++. ...+..+++.+.++.+. |..+ .+|+.++..+.... ..+.++-..|+.|.+
T Consensus 53 G~sVsKK~~g~---AV~RNRiKR~lREa~R~~~~~l~~~~~~~~~~~~~~~~iv~i~~~~~~~~~~~~~l~~~l~~ll~ 128 (133)
T PRK01903 53 LFSVSKKRVPR---AVKRNRIKRLMREAYRLEKHVLLDRLETDAGAKNRQLAIAFLYTGRSDEIPSLAEFRREMRKLLQ 128 (133)
T ss_pred EEEEecccCCc---hhhhhHHHHHHHHHHHHhHhhhcccccccccccCcceEEEEEEeccccccCCHHHHHHHHHHHHH
Confidence 3455556 444 23467777777777765 3332 47999999873222 336777777777654
No 288
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=21.62 E-value=6e+02 Score=22.91 Aligned_cols=113 Identities=9% Similarity=-0.053 Sum_probs=61.0
Q ss_pred ccCCC----hhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccH
Q 022904 8 TYGMG----LLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGY 83 (290)
Q Consensus 8 ~Yg~G----~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~ 83 (290)
.||.| ..-+.+.+.+++..+.- .+++-|+.|+..... +.+. ...+-+.++..|+ |.+-+|.-.......
T Consensus 105 ~~g~Gs~Ll~~~~~~~eiv~avr~~~-~~~~pVsvKiR~g~~--~~~~-~~~~a~~l~~~Gv---d~i~Vh~Rt~~~~y~ 177 (312)
T PRK10550 105 GSGGGATLLKDPELIYQGAKAMREAV-PAHLPVTVKVRLGWD--SGER-KFEIADAVQQAGA---TELVVHGRTKEDGYR 177 (312)
T ss_pred cCCCchHhhcCHHHHHHHHHHHHHhc-CCCcceEEEEECCCC--CchH-HHHHHHHHHhcCC---CEEEECCCCCccCCC
Confidence 46665 44555665555553221 124778888754321 1122 2456666777775 777889753322111
Q ss_pred HH--HHHHHHHHHHcCCccEEEccCC-CHHHHHHHHHcCCCeeeeecc
Q 022904 84 LD--ALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQVQ 128 (290)
Q Consensus 84 ~~--~~~~l~~L~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~~q~~ 128 (290)
.. -|+.+.++++.-.|--||.-.. ++++..++++. ...+.+++-
T Consensus 178 g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~-~g~DgVmiG 224 (312)
T PRK10550 178 AEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAI-TGCDAVMIG 224 (312)
T ss_pred CCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhc-cCCCEEEEc
Confidence 11 3566677776656666666553 66677776652 334444443
No 289
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=21.61 E-value=5.3e+02 Score=24.61 Aligned_cols=69 Identities=10% Similarity=0.133 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeeeeccccccccChhhhHHHHHHHhCCeEEeccc
Q 022904 87 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 87 ~~~l~~L~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 156 (290)
++.+.+|++...|- ..|-+.++...+..+++. .-+++.|......--.....+.+.|+.+|+.+..++.
T Consensus 268 ~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~-~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~v~~h~~ 337 (441)
T TIGR03247 268 REVMAEFRRATGLPTATNMIATDWRQMGHALQL-QAVDIPLADPHFWTMQGSVRVAQMCHDWGLTWGSHSN 337 (441)
T ss_pred HHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHh-CCCCEEeccCCcchHHHHHHHHHHHHHcCCEEEEeCC
Confidence 44556665554443 335566777888887764 2356666664321112235789999999999888754
No 290
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=21.57 E-value=4.3e+02 Score=24.17 Aligned_cols=63 Identities=10% Similarity=0.120 Sum_probs=41.0
Q ss_pred ccEEEccCCCHHHHHHHHHcCCCeeeeeccccccccCh-hhhHHHHHHHhCCeEEecccccccc
Q 022904 99 IKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 99 ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
++..-+...+.+.+++++..+.+..++..+.|+.-... -.++.+.|+++|+.++.=.+++.+.
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~ 179 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPV 179 (366)
T ss_pred ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence 44444554567777777643456667777888743222 3568999999999988755554433
No 291
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=21.52 E-value=1.9e+02 Score=22.06 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred EEcc-CCCHHHHHHHHHc-----CCCeeeeeccccccccChhhhHHHHHHHhCCeEEeccc
Q 022904 102 VALT-NFDTERLRIILEN-----GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 102 iGvs-~~~~~~l~~~~~~-----~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 156 (290)
||+. +-+.+.+..++.. ++.+..+-.--++-....+..+++++++.|+.+..|++
T Consensus 6 iGcrr~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~~~~~~~~~ 66 (121)
T PF01890_consen 6 IGCRRGAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEELGIPLRFFSA 66 (121)
T ss_dssp EEE-SS--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCTSEEEEE-H
T ss_pred eCcCCCCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhCCCeEEECH
No 292
>PRK06361 hypothetical protein; Provisional
Probab=21.43 E-value=4.8e+02 Score=21.65 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=47.1
Q ss_pred HHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCC-CHHHHHHHHHcCCCeeeeeccccccccCh
Q 022904 58 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQVQHSVVDMRP 136 (290)
Q Consensus 58 ~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~~q~~~n~~~~~~ 136 (290)
+.+.+++ +|+..+|......+ .. ...-..+.+.|.+..+|--.. ..+.++.+.+.++.+.++- . ......
T Consensus 79 ~~~~~~~---~~~~svH~~~~~~~-~~--~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~lEin~-~--~~~~~~ 149 (212)
T PRK06361 79 KKARDLG---AEIVVVHGETIVEP-VE--EGTNLAAIECEDVDILAHPGLITEEEAELAAENGVFLEITA-R--KGHSLT 149 (212)
T ss_pred HHHHHCC---CEEEEECCCCcchh-hh--hhhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCeEEEEEC-C--CCcccc
Confidence 4444443 46667885433222 11 111145667788877765432 3444444444344444432 1 112233
Q ss_pred hhhHHHHHHHhCCeEEeccc
Q 022904 137 QQKMAELCQLTGVKLITYGT 156 (290)
Q Consensus 137 ~~~~~~~~~~~gi~via~sp 156 (290)
...+++.+++.|+.++.-|.
T Consensus 150 ~~~~l~~a~~~gi~vv~~SD 169 (212)
T PRK06361 150 NGHVARIAREAGAPLVINTD 169 (212)
T ss_pred hHHHHHHHHHhCCcEEEECC
Confidence 45788999999988766543
No 293
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=21.40 E-value=3.2e+02 Score=19.66 Aligned_cols=67 Identities=12% Similarity=0.044 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhhCCCcccEEEEecCC-----CCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHH
Q 022904 50 SIVRESIDVSRRRMDVPCLDMLQFHWWD-----YSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 116 (290)
Q Consensus 50 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~-----~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~ 116 (290)
..-.+.+++-++.+|..-.++|+.-.+. .+.|+.+.+......+...|-++.-=+--++.+++.+++
T Consensus 19 ~~R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~G~v~~et~~a~~~~e~~~~~ 90 (91)
T PF08734_consen 19 PDRAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSSGNVRTETLRAFPWDEFDEIV 90 (91)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcCCceEEEEEecCCHHHHHHHh
Confidence 5566778888999999988888887652 123334678888889999999998666677888877765
No 294
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=21.28 E-value=4.5e+02 Score=21.29 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=35.0
Q ss_pred CccEEEccCCCHHHHHHHHHcCCCeeeeeccccccccC-----hhhhHHHHHHHhCCeEEecc
Q 022904 98 KIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-----PQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 98 ~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-----~~~~~~~~~~~~gi~via~s 155 (290)
.=+.||+|.|+.+++.++.+.+.++.+.---|.--... .-..+-++++...+.+++.+
T Consensus 94 ~~~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlG 156 (180)
T PF02581_consen 94 PDKIIGASCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALG 156 (180)
T ss_dssp TTSEEEEEESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEES
T ss_pred cceEEEeecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEc
Confidence 33479999999999988887554433322222111110 12356677888889998853
No 295
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=21.17 E-value=3.5e+02 Score=22.00 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=16.5
Q ss_pred cEEEEecCCCCCccHHHHHHHHHHHHHcCC
Q 022904 69 DMLQFHWWDYSNPGYLDALNHLTDLKEEGK 98 (290)
Q Consensus 69 Dl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ 98 (290)
+++++|..+......+.+-..+..|+++|.
T Consensus 153 ~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy 182 (191)
T TIGR02764 153 DIILLHASDSAKQTVKALPTIIKKLKEKGY 182 (191)
T ss_pred CEEEEeCCCCcHhHHHHHHHHHHHHHHCCC
Confidence 688888533222213444555566677764
No 296
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=21.14 E-value=1.4e+02 Score=26.79 Aligned_cols=49 Identities=14% Similarity=0.002 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhhCCCccc--EEEEecCCCCCccHHHHHHHHHHHHHcCCccE
Q 022904 49 SSIVRESIDVSRRRMDVPCLD--MLQFHWWDYSNPGYLDALNHLTDLKEEGKIKT 101 (290)
Q Consensus 49 ~~~i~~~~~~SL~~Lg~d~iD--l~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~ 101 (290)
.+...+.+.+.+++||+. +| .++.-. .......+.+.+++|.++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~-~Dw~~~~~T~---~~~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGIS-YDWSDEYITT---EPEYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCcc-ccCCCCeECC---CHHHHHHHHHHHHHHHHCCCEEe
Confidence 366777888999999984 34 333221 12235799999999999999854
No 297
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=21.10 E-value=5.9e+02 Score=22.94 Aligned_cols=22 Identities=14% Similarity=0.298 Sum_probs=15.5
Q ss_pred hhHHHHHHHhCCeEE--ecccccc
Q 022904 138 QKMAELCQLTGVKLI--TYGTVMG 159 (290)
Q Consensus 138 ~~~~~~~~~~gi~vi--a~spl~~ 159 (290)
.++++++++.|+.+. -+-|++.
T Consensus 173 ~~~~~~~~~~gi~~~~ie~mP~g~ 196 (329)
T PRK13361 173 LDLVEFCRERGLDIAFIEEMPLGE 196 (329)
T ss_pred HHHHHHHHhcCCeEEEEecccCCC
Confidence 468999999987653 4566654
No 298
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=21.07 E-value=6e+02 Score=22.70 Aligned_cols=24 Identities=13% Similarity=-0.155 Sum_probs=17.6
Q ss_pred CcceeeecCCCCCHhHHHHhHhhh
Q 022904 232 AVAGSMIGVRLGLAEHIQDTNAIF 255 (290)
Q Consensus 232 ~v~~~i~g~~~~~~~~l~enl~a~ 255 (290)
.++.|+=|.|....++++..++..
T Consensus 199 ~vPLVlHGgSG~~~e~~~~ai~~G 222 (283)
T PRK07998 199 PVPLVIHGGSGIPPEILRSFVNYK 222 (283)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHcC
Confidence 466677788877888888777543
No 299
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=21.05 E-value=2.7e+02 Score=24.73 Aligned_cols=75 Identities=8% Similarity=0.025 Sum_probs=42.8
Q ss_pred CCChhhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCC----cccEEEEecCCCCCccHHH
Q 022904 10 GMGLLKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVP----CLDMLQFHWWDYSNPGYLD 85 (290)
Q Consensus 10 g~G~sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d----~iDl~~lH~p~~~~~~~~~ 85 (290)
|.|..=..+.+.+.++ .++|+++|.... .++...+.++..|+...-. ..-++..-. ..... +++
T Consensus 153 g~GD~iQ~~KaGimEi------aDi~vVNKaD~~----gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA-~~~~G-i~e 220 (266)
T PF03308_consen 153 GLGDEIQAIKAGIMEI------ADIFVVNKADRP----GADRTVRDLRSMLHLLREREDGWRPPVLKTSA-LEGEG-IDE 220 (266)
T ss_dssp STCCCCCTB-TTHHHH-------SEEEEE--SHH----HHHHHHHHHHHHHHHCSTSCTSB--EEEEEBT-TTTBS-HHH
T ss_pred CCccHHHHHhhhhhhh------ccEEEEeCCChH----HHHHHHHHHHHHHhhccccccCCCCCEEEEEe-CCCCC-HHH
Confidence 4455556666677777 679999999632 3577788888888665431 123333222 22233 788
Q ss_pred HHHHHHHHHHc
Q 022904 86 ALNHLTDLKEE 96 (290)
Q Consensus 86 ~~~~l~~L~~~ 96 (290)
+|+++++.++.
T Consensus 221 L~~~i~~~~~~ 231 (266)
T PF03308_consen 221 LWEAIDEHRDY 231 (266)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888876543
No 300
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=20.94 E-value=5.7e+02 Score=22.36 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEE-ecCCCCCccHHHHHHHHHHHHHc-CCccEEEcc--CCCHHHHHHHHHcCCCee
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQF-HWWDYSNPGYLDALNHLTDLKEE-GKIKTVALT--NFDTERLRIILENGIPVV 123 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~l~~L~~~-G~ir~iGvs--~~~~~~l~~~~~~~~~~~ 123 (290)
+++.+.+.+++ ++..|...+-++.- +.|.. ....+.+..+.+.+++ |. .+.++ ..+.+.+..+.++|....
T Consensus 63 ~~eei~~~~~~-~~~~g~~~~~l~~~g~~~~~--~~~~~~~~~i~~~~~~~~i--~~~~~~g~~~~e~l~~Lk~aG~~~v 137 (296)
T TIGR00433 63 KVDEVLEEARK-AKAAGATRFCLVASGRGPKD--REFMEYVEAMVQIVEEMGL--KTCATLGLLDPEQAKRLKDAGLDYY 137 (296)
T ss_pred CHHHHHHHHHH-HHHCCCCEEEEEEecCCCCh--HHHHHHHHHHHHHHHhCCC--eEEecCCCCCHHHHHHHHHcCCCEE
Confidence 45566666654 34556554433332 22221 1123444444444433 32 22223 246677777766644332
Q ss_pred eeeccccc-----ccc--Chh--hhHHHHHHHhCCeEEecccc
Q 022904 124 SNQVQHSV-----VDM--RPQ--QKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 124 ~~q~~~n~-----~~~--~~~--~~~~~~~~~~gi~via~spl 157 (290)
.+-++.|. +.+ ..+ .+.++.+++.|+.+.+.-.+
T Consensus 138 ~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~ 180 (296)
T TIGR00433 138 NHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIF 180 (296)
T ss_pred EEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEE
Confidence 22222221 111 111 24577888888887665444
No 301
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=20.87 E-value=6.1e+02 Score=22.68 Aligned_cols=60 Identities=5% Similarity=0.015 Sum_probs=36.6
Q ss_pred EEEccCCCHHHHHHHHHcCCCeeeeecccccccc-ChhhhHHHHHHHhCCeEEecccccccc
Q 022904 101 TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 101 ~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
..|=|-++.+.+..+++. ...+++|+.....-. ..-..+.+.|+.+||.++..+.+..|+
T Consensus 210 a~dEs~~~~~d~~~~~~~-~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 210 ALDESLWELPQLADEYGP-GWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred EeCCCcCChHHHHHHHhc-CCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 344445566666666653 234555555443211 113578999999999999877665553
No 302
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=20.82 E-value=4.8e+02 Score=21.50 Aligned_cols=85 Identities=18% Similarity=0.123 Sum_probs=52.9
Q ss_pred HHHhhhCCCc----ccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeeeeccccccc
Q 022904 58 VSRRRMDVPC----LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVD 133 (290)
Q Consensus 58 ~SL~~Lg~d~----iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~ 133 (290)
+.|++.|+.. +|==++-|-+++. .+++.+.++++++.| |+-+=+||-+...+..+.+. ..++++ |-..
T Consensus 21 ~~L~~~Gikgvi~DlDNTLv~wd~~~~--tpe~~~W~~e~k~~g-i~v~vvSNn~e~RV~~~~~~-l~v~fi---~~A~- 92 (175)
T COG2179 21 DILKAHGIKGVILDLDNTLVPWDNPDA--TPELRAWLAELKEAG-IKVVVVSNNKESRVARAAEK-LGVPFI---YRAK- 92 (175)
T ss_pred HHHHHcCCcEEEEeccCceecccCCCC--CHHHHHHHHHHHhcC-CEEEEEeCCCHHHHHhhhhh-cCCcee---eccc-
Confidence 3456666442 3444555543333 479999999999998 56777999999999888873 223322 2221
Q ss_pred cChhhhHHHHHHHhCCe
Q 022904 134 MRPQQKMAELCQLTGVK 150 (290)
Q Consensus 134 ~~~~~~~~~~~~~~gi~ 150 (290)
......+..++++.++.
T Consensus 93 KP~~~~fr~Al~~m~l~ 109 (175)
T COG2179 93 KPFGRAFRRALKEMNLP 109 (175)
T ss_pred CccHHHHHHHHHHcCCC
Confidence 12245677777777643
No 303
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=20.72 E-value=5.1e+02 Score=22.35 Aligned_cols=72 Identities=15% Similarity=0.297 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHcCC-ccEEEccCC------CHHHHHHHHHc----CCCeeeeecccccccc---C--hhhhHHHHHHHh
Q 022904 84 LDALNHLTDLKEEGK-IKTVALTNF------DTERLRIILEN----GIPVVSNQVQHSVVDM---R--PQQKMAELCQLT 147 (290)
Q Consensus 84 ~~~~~~l~~L~~~G~-ir~iGvs~~------~~~~l~~~~~~----~~~~~~~q~~~n~~~~---~--~~~~~~~~~~~~ 147 (290)
...++.+++|++.|. |..||+-.| ++..+...++. +.++.+..+.+..... . .-+.+++.|.++
T Consensus 136 ~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~ 215 (254)
T smart00633 136 QAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAH 215 (254)
T ss_pred HHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcC
Confidence 467888999999988 999997644 35556655554 5566665555543221 0 124688888887
Q ss_pred C--CeEEecc
Q 022904 148 G--VKLITYG 155 (290)
Q Consensus 148 g--i~via~s 155 (290)
. .+|+-|+
T Consensus 216 p~v~gi~~Wg 225 (254)
T smart00633 216 PAVTGVTVWG 225 (254)
T ss_pred CCeeEEEEeC
Confidence 5 5655554
No 304
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=20.69 E-value=7.5e+02 Score=23.64 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=61.0
Q ss_pred hhHHhhhchHHHhhhCCC-CcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCcc----HHHHHH
Q 022904 14 LKISMASSSIEFVERGHQ-SSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG----YLDALN 88 (290)
Q Consensus 14 sE~~lG~~~~~~~~~~~R-~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~----~~~~~~ 88 (290)
.|+-|-++|+++.+..++ +-++|.|=+.+. .-.+++..-+++.-++.+ .+.++.+|.|...... ...+..
T Consensus 108 ge~kL~~aI~e~~~~~p~p~~I~V~stC~~~---lIGDDi~~v~~e~~~~~~--~~pvv~v~t~gf~g~s~~~G~~~a~~ 182 (457)
T TIGR01284 108 GEKKLKRCILEAFREFPEIKRMYTYATCTTA---LIGDDIDAIAREVMEEIP--DVDVFAINAPGFAGPSQSKGHHVANI 182 (457)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEECCChHH---hhccCHHHHHHHHHHhcC--CCeEEEeeCCCcCCcccchHHHHHHH
Confidence 488888889898766543 457888777542 234556666655554542 2689999998765421 222222
Q ss_pred H-HHHHHH--------cCCccEEEccCC--CHHHHHHHHHc-CCCe
Q 022904 89 H-LTDLKE--------EGKIKTVALTNF--DTERLRIILEN-GIPV 122 (290)
Q Consensus 89 ~-l~~L~~--------~G~ir~iGvs~~--~~~~l~~~~~~-~~~~ 122 (290)
+ ++.+.. .++|--||-.+. +.+.+..+++. |+.+
T Consensus 183 al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~el~~lL~~~Gl~v 228 (457)
T TIGR01284 183 TWINDKVGTAEPEITTEYDVNLIGEYNIQGDLWVLKKYFERMGIQV 228 (457)
T ss_pred HHHHHHhCccCcccCCCCeEEEEccCCchhhHHHHHHHHHHcCCeE
Confidence 2 333432 356778885554 23456666664 4443
No 305
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=20.62 E-value=2.8e+02 Score=25.45 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHcCCC--hHHHHHHHHHhCCCcceeeecCCCCCHhHHHHhHhhhcCCCCHH-HHHHHHHHHh
Q 022904 200 QFQVLLQTLKRIASKHGVS--IPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDED-DVNSIQEVTK 272 (290)
Q Consensus 200 ~~~~~~~~l~~la~~~g~s--~~~~al~~~l~~~~v~~~i~g~~~~~~~~l~enl~a~~~~Lt~e-~~~~l~~~~~ 272 (290)
.+..+...+..++++++.. +++.+.-|.+..+.-..-+.+.. + .....|.|++ +.+.|.++.+
T Consensus 213 ~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~--~--------~~~~yp~t~~GQ~~~l~~l~~ 278 (332)
T PF07745_consen 213 TLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGAT--S--------LISGYPATPQGQADFLRDLIN 278 (332)
T ss_dssp -HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSSS--T--------GGTTS-SSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccccCccc--c--------ccCCCCCCHHHHHHHHHHHHH
Confidence 4666678899999999864 57778888766655443333333 2 2234455654 4444555443
No 306
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=20.60 E-value=5.4e+02 Score=23.84 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeeeeccccccccC-hhhhHHHHHHHhCCeEEecccccccc
Q 022904 84 LDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 84 ~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
......+..+...+-+...-+...+.+.+..++..+.+..++..+-|+.-.- ...++.+.|+++|+.++.=.+++.+.
T Consensus 102 ~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~ 180 (386)
T PRK08045 102 GGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPA 180 (386)
T ss_pred HHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccc
Confidence 3445555555554433333344456777777664345666676777763222 24579999999999988766655543
No 307
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=20.60 E-value=4.7e+02 Score=27.48 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhhCCCcccEEEEecCCCCCcc--HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHH
Q 022904 52 VRESIDVSRRRMDVPCLDMLQFHWWDYSNPG--YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE 117 (290)
Q Consensus 52 i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~--~~~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~ 117 (290)
.++-+.-.+.-+| ...+++|..|....++ -..+|+.+.++++.|+ ++=+++|+-++.+.+..
T Consensus 703 ~kRkLs~aialig--~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~--aiiLTSHsMeE~EaLCt 766 (885)
T KOG0059|consen 703 NKRRLSFAIALIG--DPSVILLDEPSTGLDPKARRHLWDIIARLRKNGK--AIILTSHSMEEAEALCT 766 (885)
T ss_pred chhhHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC--EEEEEcCCHHHHHHHhh
Confidence 3444555555555 5789999999765554 3689999999999998 88899999999888887
No 308
>PRK14865 rnpA ribonuclease P; Provisional
Probab=20.57 E-value=3.8e+02 Score=20.20 Aligned_cols=63 Identities=8% Similarity=-0.066 Sum_probs=41.5
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhC--CCcccEEEEecCCCCCccHHHHHHHHHHHHHc
Q 022904 31 QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 96 (290)
Q Consensus 31 R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~ 96 (290)
|=.+.|+=|++. ...+..+++.+.++.+... ....|++++..+.....++.++...|..+.+.
T Consensus 46 RvG~sVsKKvg~---AV~RNRiKR~lRE~~R~~~~~l~~~divii~r~~~~~~~~~~l~~~l~~ll~~ 110 (116)
T PRK14865 46 KIGITVSRKVGN---AVVRNRIKRLVREFYRLNKSLFIVADYNIIAKKGAEQLDFQQISRELANALER 110 (116)
T ss_pred EEEEEEecccCc---chhHHHHHHHHHHHHHHhhccCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 444566666654 3356777777777776431 24569999988876665577777777776654
No 309
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=20.52 E-value=2.5e+02 Score=20.46 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCccEEE--------ccC---CCHHHHHHHHHcCCC-eeeeeccccccccCh
Q 022904 86 ALNHLTDLKEEGKIKTVA--------LTN---FDTERLRIILENGIP-VVSNQVQHSVVDMRP 136 (290)
Q Consensus 86 ~~~~l~~L~~~G~ir~iG--------vs~---~~~~~l~~~~~~~~~-~~~~q~~~n~~~~~~ 136 (290)
-.+...+|+++|+++++. ++- -+.+.+.+++. +.| +.+..+...++.+.+
T Consensus 27 E~~~a~eLq~~G~~~~lWr~~G~~~n~~Ifdv~d~~eLh~lL~-sLPL~p~m~i~VtpL~~Hp 88 (91)
T PF02426_consen 27 EKARAQELQRQGKWRHLWRVVGRYANVSIFDVEDNDELHELLS-SLPLFPYMDIEVTPLARHP 88 (91)
T ss_pred HHHHHHHHHHCCeeeEEEEecCCcceEEEEECCCHHHHHHHHH-hCCCccceeeeEEecccCC
Confidence 345567899999999853 222 24566666665 455 555566656655543
No 310
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=20.52 E-value=4.9e+02 Score=21.41 Aligned_cols=87 Identities=9% Similarity=0.099 Sum_probs=47.8
Q ss_pred HHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHc--CCccEEEccCCCHH--HHHHHHHcCCCeeeeecccccccc
Q 022904 59 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKIKTVALTNFDTE--RLRIILENGIPVVSNQVQHSVVDM 134 (290)
Q Consensus 59 SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~--G~ir~iGvs~~~~~--~l~~~~~~~~~~~~~q~~~n~~~~ 134 (290)
-.+.| -+.+|++=+-.+- . .....+.++.+++. +..-.+++-..++. +++.+.+.+..+.+++..-..
T Consensus 17 ~~~~l-~~~v~~iev~~~l---~-~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~~--- 88 (206)
T TIGR03128 17 LAEKV-ADYVDIIEIGTPL---I-KNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVADD--- 88 (206)
T ss_pred HHHHc-ccCeeEEEeCCHH---H-HHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCCH---
Confidence 33344 3457777663221 1 23446677777776 33323333222433 577777666565554443211
Q ss_pred ChhhhHHHHHHHhCCeEEe
Q 022904 135 RPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 135 ~~~~~~~~~~~~~gi~via 153 (290)
..-.+++++|+++|+.++.
T Consensus 89 ~~~~~~i~~~~~~g~~~~~ 107 (206)
T TIGR03128 89 ATIKGAVKAAKKHGKEVQV 107 (206)
T ss_pred HHHHHHHHHHHHcCCEEEE
Confidence 1124789999999998875
No 311
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.49 E-value=6.1e+02 Score=22.56 Aligned_cols=94 Identities=11% Similarity=0.139 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHc-CCccEEEc---cCCCHHHHHHHHHc--CCC
Q 022904 48 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE-GKIKTVAL---TNFDTERLRIILEN--GIP 121 (290)
Q Consensus 48 ~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~-G~ir~iGv---s~~~~~~l~~~~~~--~~~ 121 (290)
+++.+.+.+++.++ .|.+.+++=. .. . .+...+.++.+++. |.+ -|.+ .+|+.+...++.+. ..+
T Consensus 134 ~~~~~~~~~~~~~~-~Gf~~iKik~---g~---~-~~~d~~~v~~lr~~~g~~-~l~vD~n~~~~~~~A~~~~~~l~~~~ 204 (316)
T cd03319 134 TPEAMAAAAKKAAK-RGFPLLKIKL---GG---D-LEDDIERIRAIREAAPDA-RLRVDANQGWTPEEAVELLRELAELG 204 (316)
T ss_pred CHHHHHHHHHHHHH-cCCCEEEEEe---CC---C-hhhHHHHHHHHHHhCCCC-eEEEeCCCCcCHHHHHHHHHHHHhcC
Confidence 56777777766654 4655555532 10 1 13344555555543 312 2333 24555555544443 445
Q ss_pred eeeeeccccccccChhhhHHHHHHHhCCeEEe
Q 022904 122 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 153 (290)
Q Consensus 122 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 153 (290)
+.++.-++..- .. ..+.+.++..+|++.+
T Consensus 205 l~~iEeP~~~~--d~-~~~~~L~~~~~ipIa~ 233 (316)
T cd03319 205 VELIEQPVPAG--DD-DGLAYLRDKSPLPIMA 233 (316)
T ss_pred CCEEECCCCCC--CH-HHHHHHHhcCCCCEEE
Confidence 55555555431 11 2445555555666555
No 312
>PRK00915 2-isopropylmalate synthase; Validated
Probab=20.46 E-value=6.8e+02 Score=24.40 Aligned_cols=103 Identities=11% Similarity=0.100 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCC-ccEEEccCCCHHHHHHHHHc----CC
Q 022904 46 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILEN----GI 120 (290)
Q Consensus 46 ~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~-ir~iGvs~~~~~~l~~~~~~----~~ 120 (290)
.++.+.-.+ +-+.|.++|+|+|.+= +|.... .-++.+..+.+.++ .+..+++......++.+.+. +.
T Consensus 22 ~~s~e~K~~-ia~~L~~~Gv~~IE~G---~p~~s~----~d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~ 93 (513)
T PRK00915 22 SLTVEEKLQ-IAKQLERLGVDVIEAG---FPASSP----GDFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEA 93 (513)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEc---CCCCCh----HHHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCC
Confidence 456665554 4455999999888874 332211 22445555544433 56666665557777777743 33
Q ss_pred CeeeeeccccccccC------h------hhhHHHHHHHhCCeEEecccc
Q 022904 121 PVVSNQVQHSVVDMR------P------QQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 121 ~~~~~q~~~n~~~~~------~------~~~~~~~~~~~gi~via~spl 157 (290)
+...+.+.-|.++.. . -.+.+++|+++|..|. +++-
T Consensus 94 ~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~-f~~e 141 (513)
T PRK00915 94 PRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE-FSAE 141 (513)
T ss_pred CEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE-EEeC
Confidence 333333333333211 1 2467889999998764 4433
No 313
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=20.45 E-value=4.5e+02 Score=24.26 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeeeeccccccccCh-hhhHHHHHHHhCCeEEecccccccc
Q 022904 85 DALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGL 161 (290)
Q Consensus 85 ~~~~~l~~L~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~via~spl~~G~ 161 (290)
.....+..+.+.--++..-+...+++.++.+++.+.+..++..+.|+.-.-. -.++.+.|+++|+.++.=..++.+.
T Consensus 97 ~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~ 174 (378)
T TIGR01329 97 GTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPL 174 (378)
T ss_pred HHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccc
Confidence 4444444443333344444444467777777654556777777777643322 3578999999999999766655443
No 314
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=20.42 E-value=5.5e+02 Score=22.03 Aligned_cols=97 Identities=10% Similarity=0.067 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCc------cEEEccCCCHHHHHHHHHc-C-CC
Q 022904 50 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI------KTVALTNFDTERLRIILEN-G-IP 121 (290)
Q Consensus 50 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~i------r~iGvs~~~~~~l~~~~~~-~-~~ 121 (290)
......++..-+--+...|+-+++-.-+.... .+|.+...+.|.+.|-- .|-|++ +.+.+.++.+. + -.
T Consensus 76 ~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~s-YnEp~tM~kdL~~~GVp~~~i~lDyAGFr--TLDSvvRA~kVF~~~~ 152 (235)
T COG2949 76 RYYTYRIDAAIALYKAGKVNYLLLSGDNATVS-YNEPRTMRKDLIAAGVPAKNIFLDYAGFR--TLDSVVRARKVFGTND 152 (235)
T ss_pred HhHHHHHHHHHHHHhcCCeeEEEEecCCCccc-ccchHHHHHHHHHcCCCHHHeeecccCcc--HHHHHHHHHHHcCcCc
Confidence 56667777777777778999999998777666 68999999999999964 355777 44555565554 3 34
Q ss_pred eeeeeccccccccChhhhHHHHHHHhCCeEEecc
Q 022904 122 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 155 (290)
Q Consensus 122 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 155 (290)
|.++-..||. + ..+=.|+.+||.-+++.
T Consensus 153 ftIItQ~FHc-----e-RAlfiA~~~gIdAic~~ 180 (235)
T COG2949 153 FTIITQRFHC-----E-RALFIARQMGIDAICFA 180 (235)
T ss_pred EEEEeccccc-----H-HHHHHHHHhCCceEEec
Confidence 6666556654 3 45668999999998864
No 315
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=20.34 E-value=2.9e+02 Score=20.99 Aligned_cols=53 Identities=8% Similarity=-0.029 Sum_probs=31.2
Q ss_pred cCCCHHHHHHHHHcCCCeeeeeccccccccChhhhHHHHHHHhCCeEEecccc
Q 022904 105 TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 157 (290)
Q Consensus 105 s~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 157 (290)
+..+.+.+..+.....+++++-+.-.--......++.+.++++||++..+.+-
T Consensus 38 ~~l~~~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~ 90 (114)
T cd05125 38 EDITEESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTR 90 (114)
T ss_pred hhCCHHHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHH
Confidence 34466777776654223333333322222344457889999999999988654
No 316
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=20.18 E-value=4.7e+02 Score=24.16 Aligned_cols=79 Identities=9% Similarity=-0.022 Sum_probs=54.5
Q ss_pred hhHHhhhchHHHhhhCCCCcEEEEeccCCCCCCCCHHHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHH
Q 022904 14 LKISMASSSIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDL 93 (290)
Q Consensus 14 sE~~lG~~~~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L 93 (290)
.|+.|-++|++..+..+.+-++|.|=+.+.- -.+++..-+++. ++ .+.++.+..|..-.+.......+|+.+
T Consensus 59 GeeKL~eaI~ea~e~y~P~lI~VvTTCvseI---IGDDIeaVvkE~--~~---giPVI~V~t~GGfGdn~~G~~~aLeAi 130 (352)
T TIGR03282 59 ASEKLVKVIRYAEEKFKPELIGVVGTCASMI---IGEDLKEAVDEA--DV---DAEVIAVEVHAGFGDNTEGVIATLESA 130 (352)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEECCCchhh---ccCCHHHHHHHh--CC---CCCEEEEECCCCCccHHHHHHHHHHHH
Confidence 5667777777776666667788888886532 335666666553 33 357888877544444467899999999
Q ss_pred HHcCCcc
Q 022904 94 KEEGKIK 100 (290)
Q Consensus 94 ~~~G~ir 100 (290)
.++|.|-
T Consensus 131 idq~~i~ 137 (352)
T TIGR03282 131 AEAGIID 137 (352)
T ss_pred HHhCCcC
Confidence 9999874
No 317
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=20.11 E-value=6.3e+02 Score=22.52 Aligned_cols=132 Identities=8% Similarity=0.064 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhhhCCCcccEEEEecCCCCCccHHHHHHHHHHHHHcCCccEEEccCCCH---HHHHHHHHcCCCeeeee
Q 022904 50 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT---ERLRIILENGIPVVSNQ 126 (290)
Q Consensus 50 ~~i~~~~~~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~l~~L~~~G~ir~iGvs~~~~---~~l~~~~~~~~~~~~~q 126 (290)
++=.+..++..++-|-+ ++..+-.||.-....+.+...+-.|-++-++++|=||+--+ +.++++.+.+-++-++-
T Consensus 16 ed~~r~Ae~l~~~Yg~~--~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia 93 (275)
T PF12683_consen 16 EDEYRGAEELIKKYGDV--MIKHVTYPDNFMSEQETTISKIVSLADDPDMKAIVVSQAVPGTAEAFRKIKEKRPDILLIA 93 (275)
T ss_dssp HHHHHHHHHHHHHHHHH--EEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEEEE-SS---HHHHHHHHHH-TTSEEEE
T ss_pred hHHHHHHHHHHHHhCcc--eEEEEeCCCcccchHHHHHHHHHHhccCCCccEEEEeCCCcchHHHHHHHHhcCCCeEEEc
Confidence 44455666666655422 34444456654444677777777777788899988886544 44444444321122111
Q ss_pred cc-----------cccc-c---cChhhhHHHHHHHhCCeEEeccccccccccccccCCCCCCCCCCCCCCCcchhHhhhh
Q 022904 127 VQ-----------HSVV-D---MRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRM 191 (290)
Q Consensus 127 ~~-----------~n~~-~---~~~~~~~~~~~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (290)
.. .++. + -.....++..|++.|...+.+-.|-+-
T Consensus 94 ~~~~EDp~~i~~~aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfprh------------------------------- 142 (275)
T PF12683_consen 94 GEPHEDPEVISSAADIVVNPDEISRGYTIVWAAKKMGAKTFVHYSFPRH------------------------------- 142 (275)
T ss_dssp SS--S-HHHHHHHSSEEEE--HHHHHHHHHHHHHHTT-S-EEEEEETTG-------------------------------
T ss_pred CCCcCCHHHHhhccCeEeccchhhccHHHHHHHHHcCCceEEEEechhh-------------------------------
Confidence 11 1110 0 011356888999999888776555221
Q ss_pred hhccCCchhHHHHHHHHHHHHHHcCCC
Q 022904 192 VDAWGGWSQFQVLLQTLKRIASKHGVS 218 (290)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~la~~~g~s 218 (290)
...+.+...++.+++-|++.|+.
T Consensus 143 ----ms~~~l~~Rr~~M~~~C~~lGi~ 165 (275)
T PF12683_consen 143 ----MSYELLARRRDIMEEACKDLGIK 165 (275)
T ss_dssp ----GGSHHHHHHHHHHHHHHHHCT--
T ss_pred ----cchHHHHHHHHHHHHHHHHcCCe
Confidence 11234555568899999988763
Done!