Query 022905
Match_columns 290
No_of_seqs 126 out of 246
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:00:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13862 BCIP: p21-C-terminal 100.0 7.2E-64 1.6E-68 445.8 19.2 191 79-282 1-194 (194)
2 KOG3034 Isoamyl acetate-hydrol 100.0 4.8E-54 1E-58 399.3 17.9 251 1-282 1-263 (308)
3 PF02228 Gag_p19: Major core p 63.0 7.6 0.00017 30.9 2.8 33 90-122 38-74 (92)
4 PF06478 Corona_RPol_N: Corona 35.2 23 0.0005 34.7 1.8 43 86-128 149-192 (355)
5 PF15405 PH_5: Pleckstrin homo 28.7 27 0.00058 29.7 0.9 16 230-245 21-36 (135)
6 PF02799 NMT_C: Myristoyl-CoA: 23.5 1.4E+02 0.0031 27.1 4.7 58 87-146 31-93 (190)
7 PRK11593 folB bifunctional dih 22.1 2.9E+02 0.0063 22.4 5.9 33 94-126 52-89 (119)
8 cd04596 CBS_pair_DRTGG_assoc T 21.3 1.4E+02 0.003 22.3 3.6 78 111-195 11-92 (108)
9 PLN02706 glucosamine 6-phospha 19.6 3.8E+02 0.0081 21.5 6.1 61 86-146 8-72 (150)
10 PHA02686 hypothetical protein; 19.3 65 0.0014 27.8 1.5 35 56-91 22-56 (138)
No 1
>PF13862 BCIP: p21-C-terminal region-binding protein
Probab=100.00 E-value=7.2e-64 Score=445.77 Aligned_cols=191 Identities=47% Similarity=0.856 Sum_probs=169.4
Q ss_pred CeEEEEEeecCCCCCcHHHHHHHHHHhhcccCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeeccccCCchhH
Q 022905 79 GVVQADFVFFDPKPDDFHGVKILLQTYLDDAQWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTALNLRRYKDHKCI 158 (290)
Q Consensus 79 e~V~VDFeffdp~e~DfhgIK~LL~qlf~~~~~dls~LadlIi~Q~~vGTvIK~~~ded~dvfg~~SvLNL~~~k~~~~i 158 (290)
|+|||||+||||++.||||||+||+|||+++.||+++|||+|++|++||||||++|+++++||||+|||||++|++++|+
T Consensus 1 e~V~vdFe~~dp~~~D~hgIk~LL~ql~~~~~~dl~~LadlIi~Q~~vGsvVK~~d~~e~dvyg~~Svlnl~~~k~~~~i 80 (194)
T PF13862_consen 1 EEVNVDFEFFDPNEIDFHGIKNLLQQLFLDAEIDLSELADLIIEQNNVGSVVKQADGDEDDVYGFLSVLNLTQHKDHPCI 80 (194)
T ss_pred CeEEEEEEeeCCChhhHHHHHHHHHHhccccCcCHHHHHHHHHcCCCCceEEEecCCCCCcceEEEEEEEcccccccHHH
Confidence 57999999999999999999999999999999999999999999999999999965567899999999999999999999
Q ss_pred HHHHHHHHhhcc---chhhHHHHHHHhccCCCceeEEEeccccCCCccchHHHHHHHHHHHHHhhcCCChhhhhCccCcc
Q 022905 159 KELKEFLLKVCL---EKDVIKDLRLFMGEQANDVGLLVSQRVVNLPPQLLPPLYDALFDEVSWATEDEPTEELRNFFCFK 235 (290)
Q Consensus 159 ~~L~~yLlk~~~---~~~~~~~l~~lL~~~~~~vGLLInER~iNiP~ql~ppL~~~L~eEI~~A~e~~~~ee~r~~f~F~ 235 (290)
++|++||+++|. .+++.+.|+.+|++++.+|||||||||+|||+||+||||++|++||+||.+++ ++|+|+
T Consensus 81 ~~l~~yl~~k~~~~~~~~~~~~l~~~l~~~~~~vGLlinER~iN~P~ql~ppl~~~L~~ei~~a~~~~------~~~~f~ 154 (194)
T PF13862_consen 81 KQLRKYLLSKCSKSADKEVKKKLEKLLSSSNKNVGLLINERFINIPPQLAPPLYKMLLEEIEWAQEDE------KPFKFT 154 (194)
T ss_pred HHHHHHHHHHhhhccChhHHHHHHHHHhccCCCeEEEEehhhhcCCHHHHHHHHHHHHHHHHHHHhcC------CCCCCe
Confidence 999999998886 56788999999998889999999999999999999999999999999999875 679999
Q ss_pred EEEEEEeEEeecccchhhhhhhhhhcccCCCCCCceeecCchhhHHH
Q 022905 236 CYLLVSKIYKLKHKNANQKNKRNLKRRSASDSGDEIVYIKPEDEIFH 282 (290)
Q Consensus 236 hyLiisK~y~~~~~~~~~kk~~~kKkk~~~~~~~ei~y~~pEDEif~ 282 (290)
|||++||+|++. +.+++++ ++| ....++++|+|||||+|+
T Consensus 155 ~yL~isk~y~~~--~~~~~~~-~~~----~~~~~~~~~~~~Ede~~~ 194 (194)
T PF13862_consen 155 HYLIISKVYKEK--KKKKRKK-KKK----KKKKDEIIYFNPEDEIFH 194 (194)
T ss_pred EEEEEEEEEeec--ccccccc-ccc----cCCcccceeCChhhhhcC
Confidence 999999999843 2111111 111 123468999999999985
No 2
>KOG3034 consensus Isoamyl acetate-hydrolyzing esterase and related enzymes [General function prediction only]
Probab=100.00 E-value=4.8e-54 Score=399.31 Aligned_cols=251 Identities=33% Similarity=0.579 Sum_probs=203.0
Q ss_pred CCCCcccccCCCCCCccccchhHHHHHHHhhhcccccccccccCCCCCCCCcccccccccccCCCCCCCCCCccCCCCCe
Q 022905 1 MPRRPTRRRRMLNPQPLTFSPFARSVAQIASIHVDRCQTHKSKDQKGSPLNSKDKGIWKHTLEGKNDLSESSEEEGSGGV 80 (290)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dss~de~~~e~ 80 (290)
||+|++||++.+++.++.++||.|..+. ++........+ ..++ -+..+++++.+++
T Consensus 1 m~~~~~~~~~~s~~k~~~l~~~~r~~~e-~~~v~~~~edd---------------------dD~d--~~~eeek~~e~e~ 56 (308)
T KOG3034|consen 1 MASRSKRRAVESKYKQLPLPPFQRDEEE-EEDVEDESEDD---------------------DDED--KENEEEKEVEDEE 56 (308)
T ss_pred CCCcccchhhhhcCCCCCCcchhccccc-cccccccccCc---------------------cccc--ccchhhhccccce
Confidence 8999999999999999999999998875 33211111111 0000 0122333345689
Q ss_pred EEEEEeecCCCCCcHHHHHHHHHHhhcccCCChhhHHHHHHcCCCcceEEEecCCC-------CCCceEEEEeeeccccC
Q 022905 81 VQADFVFFDPKPDDFHGVKILLQTYLDDAQWDLSGFVDLILAQTTVGTVVKIEGDD-------DNTPFSIVTALNLRRYK 153 (290)
Q Consensus 81 V~VDFeffdp~e~DfhgIK~LL~qlf~~~~~dls~LadlIi~Q~~vGTvIK~~~de-------d~dvfg~~SvLNL~~~k 153 (290)
||+||||++|.+.||||||+||+|+|..++||+++|||+||+|+.+|+|||+++++ ++|+||++|+||++..+
T Consensus 57 vnidFE~~~p~d~D~~giknLL~Qlfl~~~Vnla~laDlii~q~~~gsvikq~~~~e~~~d~m~~D~~~~~s~lnl~~~~ 136 (308)
T KOG3034|consen 57 VNIDFEAYSPSDVDADGIKNLLQQLFLRAHVNLAALADLIIAQNHIGSVIKQDDDSETENDDMDEDPFGFLSFLNLTARK 136 (308)
T ss_pred EeccccccCCCCcchHHHHHHHHHHhccccccHHHhHHHHhhcccccceeEecccccccccccccCCceEEEEeehhhhc
Confidence 99999999999999999999999999999999999999999999999999999754 26789999999999999
Q ss_pred CchhHHHHHHHHHhhcc---chhhHHHHHHHhccCCCceeEEEeccccCCCccchHHHHHHHHHHHHHhhcCCChhhhhC
Q 022905 154 DHKCIKELKEFLLKVCL---EKDVIKDLRLFMGEQANDVGLLVSQRVVNLPPQLLPPLYDALFDEVSWATEDEPTEELRN 230 (290)
Q Consensus 154 ~~~~i~~L~~yLlk~~~---~~~~~~~l~~lL~~~~~~vGLLInER~iNiP~ql~ppL~~~L~eEI~~A~e~~~~ee~r~ 230 (290)
+.+||++|.+|+++.|. ++.+.++|+.+|.+++++|||||||||||||+||+||||++|++||+||...+ +
T Consensus 137 ~~~~ikqL~~yvL~r~~k~~~k~v~~~lk~ll~s~~k~vgLlvsERliN~P~qv~pPly~~l~eEla~A~~~~------k 210 (308)
T KOG3034|consen 137 DTKCIKQLQEYVLRRCKKNAEKEVVEQLKLLLDSGTKPVGLLVSERLINMPPQVVPPLYQSLQEELAGAHREN------K 210 (308)
T ss_pred cchHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhcCCCceeEEeehhhhcCCchhhhHHHHHHHHHHHHHhccC------C
Confidence 99999999999999887 57899999999999999999999999999999999999999999999998553 5
Q ss_pred ccCccEEEEEEeEEeeccc-chhhhhhhhhhcccC-CCCCCceeecCchhhHHH
Q 022905 231 FFCFKCYLLVSKIYKLKHK-NANQKNKRNLKRRSA-SDSGDEIVYIKPEDEIFH 282 (290)
Q Consensus 231 ~f~F~hyLiisK~y~~~~~-~~~~kk~~~kKkk~~-~~~~~ei~y~~pEDEif~ 282 (290)
+|.|.||+++.+.|....+ +...+ +..+|++.+ .-+.+++.|+|+||++|.
T Consensus 211 p~~f~~~lll~~~y~~eakk~~~s~-~~~kk~~~a~~~~~aE~~ff~eed~~~e 263 (308)
T KOG3034|consen 211 PYDFCYFLLLVKTYFVEAKKGKSSE-KPSKKKKAALLVANAEVEFFYEEDRFFE 263 (308)
T ss_pred ccceEEEEEEEEEeeehhccCCCcc-cccccHHHHhhhccchhhccchHhhhhh
Confidence 6999999999999984322 22211 112222221 235778999999999443
No 3
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=62.99 E-value=7.6 Score=30.95 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=24.1
Q ss_pred CCCCcHHHHHHHHHHhhcc----cCCChhhHHHHHHc
Q 022905 90 PKPDDFHGVKILLQTYLDD----AQWDLSGFVDLILA 122 (290)
Q Consensus 90 p~e~DfhgIK~LL~qlf~~----~~~dls~LadlIi~ 122 (290)
|++-|||-+|++|.-.+.. +.+|.|-||.+|-.
T Consensus 38 PS~~DF~qLr~flk~alkTpvwl~pi~yslla~lipk 74 (92)
T PF02228_consen 38 PSSFDFHQLRNFLKLALKTPVWLNPINYSLLASLIPK 74 (92)
T ss_dssp -STTTHHHHHHHHHHHHT-TTSTTTT-TTTHHHHS-S
T ss_pred CCcccHHHHHHHHHHHHcCCeeeccccHHHHHHHccC
Confidence 5667999999999876643 68999999998644
No 4
>PF06478 Corona_RPol_N: Coronavirus RPol N-terminus; InterPro: IPR009469 This domain represents the N-terminal region of the coronavirus RNA-directed RNA Polymerase.; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0005524 ATP binding, 0006351 transcription, DNA-dependent
Probab=35.25 E-value=23 Score=34.68 Aligned_cols=43 Identities=26% Similarity=0.428 Sum_probs=39.2
Q ss_pred eecCCCCC-cHHHHHHHHHHhhcccCCChhhHHHHHHcCCCcce
Q 022905 86 VFFDPKPD-DFHGVKILLQTYLDDAQWDLSGFVDLILAQTTVGT 128 (290)
Q Consensus 86 effdp~e~-DfhgIK~LL~qlf~~~~~dls~LadlIi~Q~~vGT 128 (290)
.+|||-|+ |+|.+=+-|...+..+-++.-+++|++++++-||-
T Consensus 149 ~WyDpVEN~di~~vy~kLG~iv~~a~L~~v~f~d~mv~~G~VGV 192 (355)
T PF06478_consen 149 DWYDPVENPDIHRVYAKLGPIVNRAMLKAVKFCDAMVEKGLVGV 192 (355)
T ss_pred cCcCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeEE
Confidence 58999997 99999999999998888999999999999998883
No 5
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=28.69 E-value=27 Score=29.71 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=13.4
Q ss_pred CccCccEEEEEEeEEe
Q 022905 230 NFFCFKCYLLVSKIYK 245 (290)
Q Consensus 230 ~~f~F~hyLiisK~y~ 245 (290)
..|-|||||+++|.-.
T Consensus 21 ~~~LFDh~Lll~K~k~ 36 (135)
T PF15405_consen 21 HVYLFDHYLLLTKPKK 36 (135)
T ss_dssp EEEEESSEEEEEEEEE
T ss_pred EEEeeccEEEEEEEEe
Confidence 4689999999999743
No 6
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=23.52 E-value=1.4e+02 Score=27.14 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=37.9
Q ss_pred ecCCCCCcHHHHHHHHHHhhcc----cCCChhhHHHHHHcCCC-cceEEEecCCCCCCceEEEEe
Q 022905 87 FFDPKPDDFHGVKILLQTYLDD----AQWDLSGFVDLILAQTT-VGTVVKIEGDDDNTPFSIVTA 146 (290)
Q Consensus 87 ffdp~e~DfhgIK~LL~qlf~~----~~~dls~LadlIi~Q~~-vGTvIK~~~ded~dvfg~~Sv 146 (290)
++.+.+.|...+..||+.|+.. ..++-.++...++.+.. |-|-|..++ + +.|-.|+|.
T Consensus 31 lR~m~~~Dv~~v~~Ll~~yl~~f~l~~~fs~eev~Hw~lp~~~Vv~syVve~~-~-~~ITDf~SF 93 (190)
T PF02799_consen 31 LRPMEEKDVPQVTKLLNKYLKKFDLAPVFSEEEVKHWFLPRKNVVYSYVVEDP-D-GKITDFFSF 93 (190)
T ss_dssp EEE--GGGHHHHHHHHHHHHTTSSEEEE--HHHHHHHHS-BTTTEEEEEEEET-T-SEEEEEEEE
T ss_pred cccCchhhHHHHHHHHHHHHHhcccccccCHHHHHhhcccCCCeEEEEEEecC-C-CceeeEEEE
Confidence 5567788999999999999854 56889999999998766 555555543 2 344444443
No 7
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=22.09 E-value=2.9e+02 Score=22.41 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHhhcccCCCh-----hhHHHHHHcCCCc
Q 022905 94 DFHGVKILLQTYLDDAQWDL-----SGFVDLILAQTTV 126 (290)
Q Consensus 94 DfhgIK~LL~qlf~~~~~dl-----s~LadlIi~Q~~v 126 (290)
||..|-..+..+..+..|+| .++++.|+.+-.+
T Consensus 52 dY~~v~~~I~~~~~~~~~~LlE~la~~ia~~i~~~~~~ 89 (119)
T PRK11593 52 SYADIAETVISHVEGARFALVERVAEEVAELLLARFNS 89 (119)
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhhCCC
Confidence 89999999999998888885 4577777777543
No 8
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=21.27 E-value=1.4e+02 Score=22.32 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=39.0
Q ss_pred CChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeeccccCCchhHHHHHHHHHh---hcc-chhhHHHHHHHhccCC
Q 022905 111 WDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTALNLRRYKDHKCIKELKEFLLK---VCL-EKDVIKDLRLFMGEQA 186 (290)
Q Consensus 111 ~dls~LadlIi~Q~~vGTvIK~~~ded~dvfg~~SvLNL~~~k~~~~i~~L~~yLlk---~~~-~~~~~~~l~~lL~~~~ 186 (290)
..++++.+.+. +...+.+.-++ +++.+.|+++.-++....... .+.+++.. .+. +.++.+.++.+... .
T Consensus 11 ~~~~~a~~~~~-~~~~~~~~V~d--~~~~~~G~v~~~~l~~~~~~~---~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-~ 83 (108)
T cd04596 11 DTVKDWHELNK-ETGHSRFPVVD--EKNKVVGIVTSKDVAGKDPDT---TIEKVMTKNPITVNPKTSVASVAHMMIWE-G 83 (108)
T ss_pred CCHHHHHHHHH-HcCCCceeEEC--CCCeEEEEecHHHHhcccccc---cHHHHhcCCCeEECCCCCHHHHHHHHHHc-C
Confidence 34556666664 44455555444 345799999866554322211 23344432 222 23344455455432 3
Q ss_pred CceeEEEec
Q 022905 187 NDVGLLVSQ 195 (290)
Q Consensus 187 ~~vGLLInE 195 (290)
.....++++
T Consensus 84 ~~~~~Vv~~ 92 (108)
T cd04596 84 IEMLPVVDD 92 (108)
T ss_pred CCeeeEEcC
Confidence 345566654
No 9
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=19.60 E-value=3.8e+02 Score=21.47 Aligned_cols=61 Identities=13% Similarity=-0.031 Sum_probs=35.6
Q ss_pred eecCCCCCcHH-HHHHHHHHhhcccCCChhhHHHHHHc---CCCcceEEEecCCCCCCceEEEEe
Q 022905 86 VFFDPKPDDFH-GVKILLQTYLDDAQWDLSGFVDLILA---QTTVGTVVKIEGDDDNTPFSIVTA 146 (290)
Q Consensus 86 effdp~e~Dfh-gIK~LL~qlf~~~~~dls~LadlIi~---Q~~vGTvIK~~~ded~dvfg~~Sv 146 (290)
.+..+.++|.. ++-.++..+.....++..++...+-. ...-..++-..+++++.++|+.++
T Consensus 8 ~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 72 (150)
T PLN02706 8 KVRRLEISDKSKGFLELLQQLTVVGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSV 72 (150)
T ss_pred EEeEhhhcccchHHHHHHHhccCCCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEE
Confidence 45667777776 57778877654456776676666532 122222333332234679998876
No 10
>PHA02686 hypothetical protein; Provisional
Probab=19.33 E-value=65 Score=27.80 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=27.5
Q ss_pred cccccccCCCCCCCCCCccCCCCCeEEEEEeecCCC
Q 022905 56 GIWKHTLEGKNDLSESSEEEGSGGVVQADFVFFDPK 91 (290)
Q Consensus 56 ~~~~~~~~~~~~~~dss~de~~~e~V~VDFeffdp~ 91 (290)
-+++|++.+.|+.+=-|=+| +++++-+||+|.|-.
T Consensus 22 v~~~~lr~~~P~rt~fs~d~-~~~evfiDFey~dg~ 56 (138)
T PHA02686 22 VCLCQLRGEAPERRFPALDE-ASGEAFLDFEFAGGD 56 (138)
T ss_pred HHHHHHHccCchhhcccccc-CCCceeEEEEecCCc
Confidence 35678888888888777777 356899999997754
Done!