Query 022905
Match_columns 290
No_of_seqs 126 out of 246
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 13:06:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022905.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022905hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jvra_ a.61.1.2 (A:) HTLV-II 56.8 3.6 0.00026 32.2 3.1 32 90-121 39-74 (137)
2 d1yr0a1 d.108.1.1 (A:4-166) Ph 42.1 19 0.0014 26.1 5.3 63 87-150 4-73 (163)
3 d1vhsa_ d.108.1.1 (A:) Putativ 41.1 58 0.0042 23.5 9.6 63 86-149 3-72 (165)
4 d1yvoa1 d.108.1.1 (A:4-172) Hy 39.0 16 0.0012 26.9 4.4 63 88-150 3-72 (169)
5 d1s3za_ d.108.1.1 (A:) Aminogl 28.4 33 0.0024 24.2 4.5 58 86-147 4-63 (147)
6 d2ozga2 d.108.1.10 (A:8-290) P 26.8 79 0.0058 25.3 7.2 78 85-168 2-99 (283)
7 d2fe7a1 d.108.1.1 (A:3-158) Pr 25.7 1.1E+02 0.0079 21.8 8.3 58 88-147 4-67 (156)
8 d1iyka2 d.108.1.2 (A:225-451) 25.5 73 0.0053 26.4 6.7 60 87-148 43-112 (227)
9 d1qsma_ d.108.1.1 (A:) Histone 24.4 84 0.0061 21.9 6.2 61 87-147 5-70 (150)
10 d1rxta2 d.108.1.2 (A:219-455) 23.7 20 0.0015 29.5 2.6 58 87-146 43-105 (201)
11 d1iica2 d.108.1.2 (A:219-455) 23.6 78 0.0057 26.4 6.5 58 87-146 43-111 (237)
No 1
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=56.83 E-value=3.6 Score=32.19 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=25.3
Q ss_pred CCCCcHHHHHHHHHHhhcc----cCCChhhHHHHHH
Q 022905 90 PKPDDFHGVKILLQTYLDD----AQWDLSGFVDLIL 121 (290)
Q Consensus 90 p~e~DfhgIK~LL~qlf~~----~~~dls~LadlIi 121 (290)
|++-|||-+|++|+-.+.. +.||.|-||.+|=
T Consensus 39 PS~~DF~qLr~flklalkTpvwl~Pi~ySlla~liP 74 (137)
T d1jvra_ 39 PSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIP 74 (137)
T ss_dssp CSTTTHHHHHHHHHHHHTCTTSTTTTCTTTHHHHSC
T ss_pred CCcccHHHHHHHHHHHHhCcccccccccchhhccCC
Confidence 5667999999999876643 6899998888753
No 2
>d1yr0a1 d.108.1.1 (A:4-166) Phosphinothricin acetyltransferase {Agrobacterium tumefaciens [TaxId: 358]}
Probab=42.08 E-value=19 Score=26.14 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=37.7
Q ss_pred ecCCCCCcHHHHHHHHHHhh-------cccCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeecc
Q 022905 87 FFDPKPDDFHGVKILLQTYL-------DDAQWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTALNLR 150 (290)
Q Consensus 87 ffdp~e~DfhgIK~LL~qlf-------~~~~~dls~LadlIi~Q~~vGTvIK~~~ded~dvfg~~SvLNL~ 150 (290)
.+...++|..+|..++.++. +....+..+..+.+.....-+..+-++. +|+.+.|++++....
T Consensus 4 IR~a~~~D~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~-~~~~ivG~~~~~~~~ 73 (163)
T d1yr0a1 4 LRDATVDDLSGIMEIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAI-LDGKVAGYASYGDWR 73 (163)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHCSSSSSCCCCCHHHHHHHHHHHHHHTCCEEEEE-ETTEEEEEEEEEESS
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcccccccCCCCHHHHHHHHHhhccCCCcEEEEE-ECCeEEEeecceeec
Confidence 35567789999999987753 2345666676666655432222222221 234689988766544
No 3
>d1vhsa_ d.108.1.1 (A:) Putative phosphinothricin acetyltransferase YwnH {Bacillus subtilis [TaxId: 1423]}
Probab=41.13 E-value=58 Score=23.45 Aligned_cols=63 Identities=8% Similarity=0.083 Sum_probs=43.0
Q ss_pred eecCCCCCcHHHHHHHHHHhhc-------ccCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeec
Q 022905 86 VFFDPKPDDFHGVKILLQTYLD-------DAQWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTALNL 149 (290)
Q Consensus 86 effdp~e~DfhgIK~LL~qlf~-------~~~~dls~LadlIi~Q~~vGTvIK~~~ded~dvfg~~SvLNL 149 (290)
.++...++|...|..|..++.. ....+..++.+.+.....-+.+.-+. ++++.+.|++++-+.
T Consensus 3 ~iR~a~~~D~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~ivG~~~~~~~ 72 (165)
T d1vhsa_ 3 TLRLAEHRDLEAVVAIYNSTIASRMVTADTEPVTPEDRMEWFSGHTESRPLYVAE-DENGNVAAWISFETF 72 (165)
T ss_dssp EEEECCGGGHHHHHHHHHHHHTTTSSCSCSSCCCGGGGHHHHHTCCSSSCEEEEE-CTTSCEEEEEEEEES
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcccccccCCCCHHHHHHHHHhccccCCeEEEE-ecCCceEeeeeeeec
Confidence 4556778899999999877542 23566777888877766656555444 345678998876543
No 4
>d1yvoa1 d.108.1.1 (A:4-172) Hypothetical protein PA4866 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=39.01 E-value=16 Score=26.93 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=38.6
Q ss_pred cCCCCCcHHHHHHHHHHhh-------cccCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeecc
Q 022905 88 FDPKPDDFHGVKILLQTYL-------DDAQWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTALNLR 150 (290)
Q Consensus 88 fdp~e~DfhgIK~LL~qlf-------~~~~~dls~LadlIi~Q~~vGTvIK~~~ded~dvfg~~SvLNL~ 150 (290)
+...+.|..+|..+++++. +....+..+....+..+..-+..+-+..+.++.+.|++++-...
T Consensus 3 R~a~~~D~~~i~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~vG~~~~~~~~ 72 (169)
T d1yvoa1 3 RDAGVADLPGILAIYNDAVGNTTAIWNETPVDLANRQAWFDTRARQGYPILVASDAAGEVLGYASYGDWR 72 (169)
T ss_dssp EECCGGGHHHHHHHHHHHHHHCSSSSCCSCCCHHHHHHHHHHHHHHTCCEEEEECTTCCEEEEEEEEESS
T ss_pred ccCcHHHHHHHHHHHHHHHhhcceecccCCCCHHHHHHHHHhhhccCCceEEEEecCCCEEEeecccccc
Confidence 4557789999999987754 33455677777766555333322222222445799998765443
No 5
>d1s3za_ d.108.1.1 (A:) Aminoglycoside N-acetyltransferase AAC(6')-IY {Salmonella enteritidis [TaxId: 149539]}
Probab=28.43 E-value=33 Score=24.15 Aligned_cols=58 Identities=9% Similarity=0.086 Sum_probs=36.8
Q ss_pred eecCCCCCcHHHHHHHHHHhhccc--CCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEee
Q 022905 86 VFFDPKPDDFHGVKILLQTYLDDA--QWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTAL 147 (290)
Q Consensus 86 effdp~e~DfhgIK~LL~qlf~~~--~~dls~LadlIi~Q~~vGTvIK~~~ded~dvfg~~SvL 147 (290)
+....++.|...+..|.++++... ......+.+.+... ....+|..+ ++.+.|++++-
T Consensus 4 ~Ir~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~va~~---~~~~vG~~~~~ 63 (147)
T d1s3za_ 4 DIRQMNKTHLEHWRGLRKQLWPGHPDDAHLADGEEILQAD-HLASFIAMA---DGVAIGFADAS 63 (147)
T ss_dssp EEEECCGGGHHHHHHHHHHHSTTSCHHHHHHHHHHHHHCS-SEEEEEEEE---TTEEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhCC-CcEEEEEEE---CCEEEEEEEEE
Confidence 456678899999999999988543 23445566655543 333444333 24578877653
No 6
>d2ozga2 d.108.1.10 (A:8-290) Putative acetyltransferase Ava4977 {Anabaena variabilis [TaxId: 1172]}
Probab=26.75 E-value=79 Score=25.25 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=46.6
Q ss_pred EeecCCCCCcHHHHHHHHHHhhcccCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeee----------------
Q 022905 85 FVFFDPKPDDFHGVKILLQTYLDDAQWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTALN---------------- 148 (290)
Q Consensus 85 Feffdp~e~DfhgIK~LL~qlf~~~~~dls~LadlIi~Q~~vGTvIK~~~ded~dvfg~~SvLN---------------- 148 (290)
|.+...+++|+..|..|+.+.|.....+..-.-+-+-.++. -|+..+ +.+.|.++++.
T Consensus 2 ~~~~ka~~~d~~~l~~l~~~~F~~~~~~~~~~~~~~~~~~~--~v~~~~----~~ivg~~~~~~~~~~~~g~~~~~~~i~ 75 (283)
T d2ozga2 2 FKYTKASQENIQQLGNILEQCFVMSFGDSEIYVKGIGLENF--RVIYRE----QKVAGGLAILPMGQWWGGQRVPMAGIA 75 (283)
T ss_dssp EEEEECCTTTHHHHHHHHHHHTTCCTTHHHHHHHHHCGGGE--EEEEET----TEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred eEEEECCHHHHHHHHHHHHHHcCCCcCcHHHHHHHhcCCCE--EEEEEC----CEEEEEEEEEEeeeeECCeeeeEeeEE
Confidence 67788899999999999999996654444334343323222 233221 23444444433
Q ss_pred ----ccccCCchhHHHHHHHHHhh
Q 022905 149 ----LRRYKDHKCIKELKEFLLKV 168 (290)
Q Consensus 149 ----L~~~k~~~~i~~L~~yLlk~ 168 (290)
...|+.......|.+.+++.
T Consensus 76 ~v~v~p~~rg~G~~~~L~~~~~~~ 99 (283)
T d2ozga2 76 AVGIAPEYRGDGAAIALIQHTLQE 99 (283)
T ss_dssp EEEECGGGTTSSHHHHHHHHHHHH
T ss_pred EEEECcccccCChHHHHHHHHHHH
Confidence 34566666677777777743
No 7
>d2fe7a1 d.108.1.1 (A:3-158) Probable N-acetyltransferase PA0478 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=25.74 E-value=1.1e+02 Score=21.84 Aligned_cols=58 Identities=12% Similarity=0.187 Sum_probs=38.0
Q ss_pred cCCCCCcHHHHHHHHHHhhc------ccCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEee
Q 022905 88 FDPKPDDFHGVKILLQTYLD------DAQWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTAL 147 (290)
Q Consensus 88 fdp~e~DfhgIK~LL~qlf~------~~~~dls~LadlIi~Q~~vGTvIK~~~ded~dvfg~~SvL 147 (290)
+...+.|...|-.|++.+.. ...++...+.+.+..++.-..++-... |+.+.|++++.
T Consensus 4 R~a~~~D~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~--~~~ivG~~~~~ 67 (156)
T d2fe7a1 4 RPAVPADAEQILAFIIELADYERARHEVVTDVEGIRRSLFAEGSPTRALMCLS--EGRPIGYAVFF 67 (156)
T ss_dssp EECCGGGHHHHHHHHHHHHHHTTCGGGCCCCHHHHHHHHTSTTCSEEEEEEEE--TTEEEEEEEEE
T ss_pred EECCHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHhccCCCceEEEEee--CCEEEEEEeEe
Confidence 45677899999999887532 234556677777777766565555443 24588876543
No 8
>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]}
Probab=25.46 E-value=73 Score=26.41 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=42.8
Q ss_pred ecCCCCCcHHHHHHHHHHhhcc----cCCChhhHHHHHHcCC------CcceEEEecCCCCCCceEEEEeee
Q 022905 87 FFDPKPDDFHGVKILLQTYLDD----AQWDLSGFVDLILAQT------TVGTVVKIEGDDDNTPFSIVTALN 148 (290)
Q Consensus 87 ffdp~e~DfhgIK~LL~qlf~~----~~~dls~LadlIi~Q~------~vGTvIK~~~ded~dvfg~~SvLN 148 (290)
++.+.+.|...+..||+.|+.. ..|+-.+++..++.+. -|-|-|..+ +++.+-.|+|.-+
T Consensus 43 lR~M~~kDv~~V~~LL~~yl~~f~l~~~F~~eev~Hwflp~~~~~~~~Vi~sYVve~--~~g~ItDF~SFY~ 112 (227)
T d1iyka2 43 LRPMTGKDVSTVLSLLYKYQERFDIVQLFTEEEFKHWMLGHDENSDSNVVKSYVVED--ENGIITDYFSYYL 112 (227)
T ss_dssp EEECCGGGHHHHHHHHHHHHTTSSEEEECCHHHHHHHHHCSCSSSCCSSEEEEEEEC--TTSCEEEEEEEEE
T ss_pred cccCchhhHHHHHHHHHHHHHcCcceEecCHHHHHHhhcCccccCCCCeEEEEEEEC--CCCcEeEEEEEee
Confidence 6778889999999999999854 5799999999999874 244444332 3444555554433
No 9
>d1qsma_ d.108.1.1 (A:) Histone acetyltransferase HPA2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.35 E-value=84 Score=21.90 Aligned_cols=61 Identities=10% Similarity=0.027 Sum_probs=33.7
Q ss_pred ecCCCCCcHHHHHHHHHHhhc--ccCCCh---hhHHHHHHcCCCcceEEEecCCCCCCceEEEEee
Q 022905 87 FFDPKPDDFHGVKILLQTYLD--DAQWDL---SGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTAL 147 (290)
Q Consensus 87 ffdp~e~DfhgIK~LL~qlf~--~~~~dl---s~LadlIi~Q~~vGTvIK~~~ded~dvfg~~SvL 147 (290)
.+...++|++.+..|.+.|.. .....- ..+..-+.++..-+...-...++++.+.|+..+.
T Consensus 5 IR~~~~~D~e~~~~L~~~y~~fy~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivg~~~~~ 70 (150)
T d1qsma_ 5 VRFVTENDKEGWQRLWKSYQDFYEVSFPDDLDDFNFGRFLDPNIKMWAAVAVESSSEKIIGMINFF 70 (150)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSCEEEEEEEESSSCCEEEEEEEE
T ss_pred EEECCHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhCCCcccceeeeehhhcCcEEEEEEEe
Confidence 456677899999999887643 233332 2233335555443333222223445688876653
No 10
>d1rxta2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.69 E-value=20 Score=29.47 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=42.1
Q ss_pred ecCCCCCcHHHHHHHHHHhhcc----cCCChhhHHHHHHcCCC-cceEEEecCCCCCCceEEEEe
Q 022905 87 FFDPKPDDFHGVKILLQTYLDD----AQWDLSGFVDLILAQTT-VGTVVKIEGDDDNTPFSIVTA 146 (290)
Q Consensus 87 ffdp~e~DfhgIK~LL~qlf~~----~~~dls~LadlIi~Q~~-vGTvIK~~~ded~dvfg~~Sv 146 (290)
++.+.+.|...+..||+.|+.+ ..|+-.++...++.+.. |-|-|..+ +++.+-+|+|.
T Consensus 43 lR~m~~kDv~~v~~Ll~~yl~~f~l~~~f~~eev~Hwflp~~~Vi~syVve~--~~g~itDf~SF 105 (201)
T d1rxta2 43 LRPMETKDIPVVHQLLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVEN--ANGEVTDFLSF 105 (201)
T ss_dssp EEECCGGGSHHHHHHHHHHSTTSSBCCCCCTTTTTTSSSCCSSSEEEEEECC--SSSCCCCEEEE
T ss_pred cccCcHhhHHHHHHHHHHHHhcCceEEecCHHHhheeeccCCCEEEEEEEEC--CCCcEeeEEEE
Confidence 6778889999999999999854 56888999999988655 56666432 33445555554
No 11
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.58 E-value=78 Score=26.38 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=41.3
Q ss_pred ecCCCCCcHHHHHHHHHHhhcc----cCCChhhHHHHHHcCC-------CcceEEEecCCCCCCceEEEEe
Q 022905 87 FFDPKPDDFHGVKILLQTYLDD----AQWDLSGFVDLILAQT-------TVGTVVKIEGDDDNTPFSIVTA 146 (290)
Q Consensus 87 ffdp~e~DfhgIK~LL~qlf~~----~~~dls~LadlIi~Q~-------~vGTvIK~~~ded~dvfg~~Sv 146 (290)
++.+.+.|...+..||+.|+.+ ..|+-.+++..++.+. -|-|-|..+ .++.|-.|+|.
T Consensus 43 lR~M~~kDv~~V~~LL~~yl~~f~l~~~Ft~eev~Hwflp~~~~~~~~~VI~sYVve~--~~g~ITDF~SF 111 (237)
T d1iica2 43 LRKLKKEDIDQVFELFKRYQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQ--PDGKITDFFSF 111 (237)
T ss_dssp EEECCGGGHHHHHHHHHHHHTTSSEEECCCHHHHHHHHSCCTTCCGGGCCEEEEEEEC--TTSCEEEEEEE
T ss_pred cccCchhhHHHHHHHHHHHHHhCcceEecCHHHhhheeccccCCCCCCcEEEEEEEEC--CCCcEeeEEEE
Confidence 5677889999999999999854 6799999999999864 345555333 33444444443
Done!