BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022907
(290 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M330|PSMF1_ARATH Probable proteasome inhibitor OS=Arabidopsis thaliana GN=At3g53970
PE=2 SV=1
Length = 302
Score = 264 bits (675), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 167/305 (54%), Positives = 206/305 (67%), Gaps = 18/305 (5%)
Query: 1 MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATG--PSADTDFTSPSTDE 58
M+N ++VMA+IR ARP FRN+ DK+AFA+H++F+ASG++LTATG AD +S S ++
Sbjct: 1 MANSQTVMAMIRLARPPFRNNHDKVAFAIHSSFVASGYILTATGRPAFADEALSSSSQND 60
Query: 59 VGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADF 118
VGI+ WNE + YAFVY P+KGSKK+LVKCL M++KLLVDA+ADG +EP HLEI V D+
Sbjct: 61 VGIEGWNEFEGEYAFVYANPKKGSKKILVKCLAMDDKLLVDAIADGGAEPAHLEIKVGDY 120
Query: 119 VAK-NGSNYSDQFQNLEKLVTDVDKEIILQLYGSSKPASSERGEGSRLNNPDFGYFVHQ- 176
+ N +YS QF+NL+KLVTD+ EII +L G KP +S R + S N + Y+
Sbjct: 121 AEESNEGDYSAQFKNLDKLVTDLQSEIIDKLDGKPKPVAS-RAQSSSETNEEPRYYDDTP 179
Query: 177 ---GPQPLPTGTPVPPINPDLGG--DVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGF--F 229
GPQ P+G VPPI P GG D++PGPGAGMYP RG F GDG ML+GP P F F
Sbjct: 180 NPLGPQIHPSGVVVPPI-PGNGGYSDLFPGPGAGMYPGRGGF-GDGSMLVGPTDPRFFPF 237
Query: 230 GGEPDLP----RGNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSSRRPDGTHPDLPLRPD 285
G D P +P PPGARFDPYGPP VPG EP F R R P G HPDL P
Sbjct: 238 GDGSDRPGFMGPPHPGMPPPGARFDPYGPPGVPGFEPGRFTRQPPRGPGGGHPDLEHFPG 297
Query: 286 GSDFI 290
GSDFI
Sbjct: 298 GSDFI 302
>sp|Q8BHL8|PSMF1_MOUSE Proteasome inhibitor PI31 subunit OS=Mus musculus GN=Psmf1 PE=1
SV=1
Length = 271
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 122/268 (45%), Gaps = 47/268 (17%)
Query: 9 AVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELD 68
+ +A P+ D L +H + +G+ TG D S E+ WN
Sbjct: 6 VLFASAAPSMSCPQDALVCFLHWEVVTNGYYALGTG---DQPGPSDKKSELLPAKWNSNK 62
Query: 69 DNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFV-AKNGSNYS 127
+ YA Y + + G++K+L+K + + N ++++ L G + L +N+ D++ A++ S++
Sbjct: 63 ELYALRY-ESKDGARKLLLKAVSVENGMIINVLELGTQQVADLTLNLDDYIDAEDLSDFH 121
Query: 128 DQFQNLEKLVTDVDKEIILQLYGSSKPASSERGEGSRLNNP--DFGYFVHQGPQPLPTGT 185
++N E+L + + II ++ E+ E +R N+P +F + PL +
Sbjct: 122 RTYKNSEELRSQIRSGIITPIH--------EQWEKARANSPPREFPPATAREVDPLQISS 173
Query: 186 PVP----------PINP-DLGGDVYPGPGAGMYPRRGRFGGD-GGMLIGPNHPGF----- 228
P P++P +GGD + P FG GGM++ P GF
Sbjct: 174 HRPHTSRQPAWRDPLSPFAVGGD-------DLDP----FGCQRGGMIVDPLRSGFPRVLI 222
Query: 229 --FGGEPDLPRGNPWPIPPGARFDPYGP 254
G P+ R P +PPGARFDP+GP
Sbjct: 223 DPSSGLPN--RLPPGAVPPGARFDPFGP 248
>sp|Q5XIU5|PSMF1_RAT Proteasome inhibitor PI31 subunit OS=Rattus norvegicus GN=Psmf1
PE=2 SV=1
Length = 271
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 119/265 (44%), Gaps = 41/265 (15%)
Query: 9 AVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELD 68
+ +A P D L +H + +G+ TG D + E+ WN
Sbjct: 6 VLFASAAPAMTCPQDALVCFLHWEVVTNGYYGLGTGDQPDPN---DKKSELLPAEWNSNK 62
Query: 69 DNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFV-AKNGSNYS 127
+ YA Y + + G++K+L+K + + N ++++ L G + L +N+ D++ A++ S++
Sbjct: 63 ELYALRY-ESKDGARKLLLKAVSVENGMIINVLEHGTQQVADLTLNLDDYIDAEDLSDFH 121
Query: 128 DQFQNLEKLVTDVDKEIILQLYGSSKPASSERGEGSRLNNP--DFGYFVHQGPQPLPTGT 185
++N E+L + + II ++ E+ E RL++P +F + PL +
Sbjct: 122 RTYKNSEELRSRIRSGIITPIH--------EQWEKVRLSSPPREFPPATAREVDPLRISS 173
Query: 186 PVP----------PINPDLGGDVYPGPGAGMYPRRGRFGGD-GGMLIGPNHPGFFGGEPD 234
P P++P G G + P FG GGM++ P GF D
Sbjct: 174 HHPHTSRQPTWRDPLSPFAVG------GEDLDP----FGCQRGGMIVDPLRSGFPRALID 223
Query: 235 ----LP-RGNPWPIPPGARFDPYGP 254
LP R P +PPGARFDP+GP
Sbjct: 224 PSSGLPNRLPPGAVPPGARFDPFGP 248
>sp|Q92530|PSMF1_HUMAN Proteasome inhibitor PI31 subunit OS=Homo sapiens GN=PSMF1 PE=1
SV=2
Length = 271
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 116/261 (44%), Gaps = 33/261 (12%)
Query: 9 AVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELD 68
+ +A P D L +H + G+ G D + E+ WN
Sbjct: 6 VLFASAAPAITCRQDALVCFLHWEVVTHGYFGLGVG---DQPGPNDKKSELLPAGWNNNK 62
Query: 69 DNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFV-AKNGSNYS 127
D Y Y + + GS+K+LVK + + + ++++ L G+ + L +N+ D++ A++ ++
Sbjct: 63 DLYVLRY-EYKDGSRKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEHLGDFH 121
Query: 128 DQFQNLEKLVTDVDKEIILQLYGSSKPASSERGEGSRLNNP--DFGYFVHQGPQPL---- 181
++N E+L + + II ++ E+ E + +++P +F + PL
Sbjct: 122 RTYKNSEELRSRIVSGIITPIH--------EQWEKANVSSPHREFPPATAREVDPLRIPP 173
Query: 182 --PTGTPVPPINPDLGGDVYPGPGAGMY-PRRGRFGGDGGMLIGPNHPGFFGGEPD---- 234
P + PP LG V G + PRRG GM++ P GF D
Sbjct: 174 HHPHTSRQPPWCDPLGPFVVGGEDLDPFGPRRG------GMIVDPLRSGFPRALIDPSSG 227
Query: 235 LP-RGNPWPIPPGARFDPYGP 254
LP R P +PPGARFDP+GP
Sbjct: 228 LPNRLPPGAVPPGARFDPFGP 248
>sp|Q5RDN3|PSMF1_PONAB Proteasome inhibitor PI31 subunit OS=Pongo abelii GN=PSMF1 PE=2
SV=1
Length = 271
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 31/260 (11%)
Query: 9 AVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELD 68
+ +A P D L +H + G+ G D + E+ WN
Sbjct: 6 VLFASAAPAITCTQDALVCFLHWEVVTHGYYALGVG---DQPGPNDKKSELLPAGWNNNK 62
Query: 69 DNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFV-AKNGSNYS 127
D Y Y + + GS+K+LVK + + + ++++ L G+ + L +N+ D++ A++ ++
Sbjct: 63 DLYVLRY-EYKDGSRKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEHLGDFH 121
Query: 128 DQFQNLEKLVTDVDKEIILQLYGSSKPASSERGEGSRLNNP--DFGYFVHQGPQPL---- 181
++N E+L + + II ++ E+ E + +++P +F + PL
Sbjct: 122 RTYKNSEELRSRIVSGIITPIH--------EQWEKANVSSPHREFPPATAREVDPLRIPP 173
Query: 182 --PTGTPVPPINPDLGGDVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGFFGGEPD----L 235
P + PP LG G + R GGM++ P GF D L
Sbjct: 174 HHPHTSRQPPWCDPLGPFAVGGEDLDPFGHR-----RGGMIVDPLRSGFPRALIDPSSGL 228
Query: 236 P-RGNPWPIPPGARFDPYGP 254
P R P +PPGARFDP+GP
Sbjct: 229 PNRLPPGAVPPGARFDPFGP 248
>sp|Q3SX30|PSMF1_BOVIN Proteasome inhibitor PI31 subunit OS=Bos taurus GN=PSMF1 PE=2 SV=2
Length = 270
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 111/263 (42%), Gaps = 38/263 (14%)
Query: 9 AVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELD 68
+ +A P D L +H + G+ G D + E+ WN
Sbjct: 6 VLFASAAPAITCAQDALVCFLHWEVVTHGYYGLGAG---DQPGPNDKKSELLPVEWNSNK 62
Query: 69 DNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFV-AKNGSNYS 127
D Y Y + + GS+K+LVK + + N ++++ L G+ + L +N+ D++ +++ ++
Sbjct: 63 DLYVLRY-ESKDGSRKLLVKAVTVENSMIINVLEHGSQQVSDLTLNLNDYIDSEHLVDFH 121
Query: 128 DQFQNLEKLVTDVDKEIILQLYGSSK-----------PASSERGEGSRLNNPDFGYFVHQ 176
++N E+L + + II ++ + PA++ + R++ Q
Sbjct: 122 RVYKNSEELRSRIVSGIITPIHEQWEKANLSPHREFPPATAREVDPLRIHP--------Q 173
Query: 177 GPQPLPTGTPVPPINPDLGGDVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGFFGGEPD-- 234
P T P+ P G G + P R GGM++ P GF D
Sbjct: 174 HPHTSRQPTWCDPLGPFAVG------GEDLDPFGCR---RGGMIVDPLRSGFPRALIDPS 224
Query: 235 --LP-RGNPWPIPPGARFDPYGP 254
LP R P +PPGARFDP+GP
Sbjct: 225 SGLPNRLPPGAVPPGARFDPFGP 247
>sp|Q9UTI1|YKZA_SCHPO Uncharacterized protein C15E1.10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC15E1.10 PE=4 SV=2
Length = 265
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 91/237 (38%), Gaps = 38/237 (16%)
Query: 67 LDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFVAKNGSNY 126
L ++ F Y+ E S+ V + L+ NK + A+ +S I D
Sbjct: 45 LTEDSEFNYIVNE--SQNVSTR-LIFWNKWIYILCANTSSNITATRIFRLD--------- 92
Query: 127 SDQFQNLEKLVTDV-----DKEIILQLYGSSKPASSERGEGSRLNNPDFGYFVHQGPQPL 181
DQ NLE LV +V D + ++K S+ F GP
Sbjct: 93 DDQPWNLESLVAEVCPVDTDNRLAEHAARTAKDTSANELNYESYQEKSRAPFGFAGPFGA 152
Query: 182 PTGTPVPPINPDLGG-DVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGFF---GGEPDLPR 237
G+ P+ P +G D+YP G G DGGM+ NHP F +
Sbjct: 153 MPGSQ--PMFPSIGASDLYPAGIGG-----SDMGNDGGMIPTFNHPIFHPENRSRNEQAS 205
Query: 238 GNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSSRRPD----GTHPDLPLRPDGSDFI 290
N IPPGAR+DP GP D GF R+ R+P G P PD DF+
Sbjct: 206 ANRTNIPPGARYDPTGPGDF-----RGFGRD-ERKPQFPFKGPRSQFPGEPDNDDFM 256
>sp|Q08D57|SET1B_XENTR Histone-lysine N-methyltransferase SETD1B OS=Xenopus tropicalis
GN=setd1b PE=2 SV=1
Length = 1956
Score = 35.4 bits (80), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 203 GAGMYPRRGRFGGDGGMLIGPNHPGF-FGGEPDLPRGNPWPIPPGARFDPYGPPDVPGLE 261
G G YP GG M G HP F L RG PWP P +FDP PP PG E
Sbjct: 756 GQGSYPYHHFMGG--SMQFGNQHPYRPFAISAHLTRGQPWP--PFPKFDPSVPP--PGYE 809
>sp|Q92GT4|FPG_RICCN Formamidopyrimidine-DNA glycosylase OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=mutM PE=3 SV=3
Length = 273
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 57 DEVGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVA 116
+++GI+ +++L Y+K + +KK+ +K L+M+N+++V ASE +HL
Sbjct: 130 NDLGIEPFSDL---LTLEYLKDKLQTKKIPIKNLIMDNRVIVGVGNIYASESLHLARIHP 186
Query: 117 DFVAKNGSNYS-DQFQNLEKLVTDV 140
D K+G+N D+ +NL K + DV
Sbjct: 187 D---KSGNNLRDDEIENLIKAIRDV 208
>sp|A8GTA0|FPG_RICRS Formamidopyrimidine-DNA glycosylase OS=Rickettsia rickettsii
(strain Sheila Smith) GN=mutM PE=3 SV=1
Length = 273
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 9/94 (9%)
Query: 53 SPSTDEVGIDHWNEL-----DDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASE 107
S TD + + +N+L D Y+K + +KK+ +K L+M+N+++V ASE
Sbjct: 118 SFKTDLLEKEFFNDLGIEPFSDLLTLEYLKDKLQTKKIPIKNLIMDNRVIVGVGNIYASE 177
Query: 108 PVHLEINVADFVAKNGSNYS-DQFQNLEKLVTDV 140
+HL D K+G++ D+ +NL K + DV
Sbjct: 178 SLHLARIHPD---KSGNDLRDDEIENLIKAIRDV 208
>sp|B0BUU0|FPG_RICRO Formamidopyrimidine-DNA glycosylase OS=Rickettsia rickettsii
(strain Iowa) GN=mutM PE=3 SV=1
Length = 273
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 9/94 (9%)
Query: 53 SPSTDEVGIDHWNEL-----DDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASE 107
S TD + + +N+L D Y+K + +KK+ +K L+M+N+++V ASE
Sbjct: 118 SFKTDLLEKEFFNDLGIEPFSDLLTLEYLKDKLQTKKIPIKNLIMDNRVIVGVGNIYASE 177
Query: 108 PVHLEINVADFVAKNGSNYS-DQFQNLEKLVTDV 140
+HL D K+G++ D+ +NL K + DV
Sbjct: 178 SLHLARIHPD---KSGNDLRDDEIENLIKAIRDV 208
>sp|C4K2K4|FPG_RICPU Formamidopyrimidine-DNA glycosylase OS=Rickettsia peacockii (strain
Rustic) GN=mutM PE=3 SV=1
Length = 273
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 9/94 (9%)
Query: 53 SPSTDEVGIDHWNEL-----DDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASE 107
S TD + + +N+L D Y+K + +KK+ +K L+M+N+++V ASE
Sbjct: 118 SFKTDLLEKEFFNDLGIEPFSDLLTLEYLKDKLQTKKIPIKNLIMDNRVIVGVGNIYASE 177
Query: 108 PVHLEINVADFVAKNGSNYS-DQFQNLEKLVTDV 140
+HL D K+G++ D+ +NL K + DV
Sbjct: 178 SLHLARIHPD---KSGNDLRDDEIENLIKAIRDV 208
>sp|C3PLF5|FPG_RICAE Formamidopyrimidine-DNA glycosylase OS=Rickettsia africae (strain
ESF-5) GN=mutM PE=3 SV=1
Length = 273
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 9/94 (9%)
Query: 53 SPSTDEVGIDHWNEL-----DDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASE 107
S TD + + +N+L D Y+K + +KK+ +K L+M+N+++V ASE
Sbjct: 118 SFKTDLLEKEFFNDLGIEPFSDLLTLEYLKDKLQTKKIPIKNLIMDNRVIVGIGNIYASE 177
Query: 108 PVHLEINVADFVAKNGSNYS-DQFQNLEKLVTDV 140
+HL D K+G++ D+ +NL K + DV
Sbjct: 178 SLHLARIHPD---KSGNDLRDDEIENLIKAIRDV 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.140 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,378,126
Number of Sequences: 539616
Number of extensions: 7764054
Number of successful extensions: 16898
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 439
Number of HSP's that attempted gapping in prelim test: 15584
Number of HSP's gapped (non-prelim): 1346
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)