Query         022907
Match_columns 290
No_of_seqs    133 out of 251
Neff          6.0 
Searched_HMMs 46136
Date          Fri Mar 29 07:01:15 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022907hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG4761 Proteasome formation i 100.0 3.6E-50 7.8E-55  359.1  21.2  249    1-271     1-260 (266)
  2 PF11566 PI31_Prot_N:  PI31 pro 100.0 1.2E-35 2.5E-40  254.3  11.8  139    9-151     2-149 (155)
  3 PF08577 PI31_Prot_C:  PI31 pro  99.7   6E-17 1.3E-21  122.7   6.6   62  192-254     1-73  (73)
  4 KOG4761 Proteasome formation i  83.9      37  0.0008   31.7  14.3   26   82-107    70-96  (266)
  5 PF03633 Glyco_hydro_65C:  Glyc  75.8      12 0.00025   26.0   5.8   36   59-103     2-37  (54)
  6 KOG1924 RhoA GTPase effector D  36.6 6.2E+02   0.013   27.9  12.5   13  109-121   450-462 (1102)
  7 KOG1924 RhoA GTPase effector D  35.1 5.4E+02   0.012   28.4  11.7    6   70-75    387-392 (1102)
  8 KOG0132 RNA polymerase II C-te  32.0 3.7E+02   0.008   29.3   9.9   40  216-262   689-728 (894)
  9 PRK07252 hypothetical protein;  25.7 1.5E+02  0.0033   24.2   4.9   61   90-151    48-118 (120)
 10 PF12565 DUF3747:  Protein of u  25.6 2.4E+02  0.0052   25.2   6.3   36   68-104    95-130 (181)
 11 PF11532 HnRNP_M:  Heterogeneou  25.5      26 0.00056   22.0   0.2    9  246-254    18-26  (30)
 12 cd00173 SH2 Src homology 2 dom  24.5 1.5E+02  0.0031   22.0   4.3   19  127-145    64-82  (94)
 13 smart00252 SH2 Src homology 2   23.9 1.5E+02  0.0032   21.7   4.2   17  127-143    65-81  (84)

No 1  
>KOG4761 consensus Proteasome formation inhibitor PI31 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00  E-value=3.6e-50  Score=359.06  Aligned_cols=249  Identities=36%  Similarity=0.500  Sum_probs=198.0

Q ss_pred             CCChHHHHHHHHHHCCCCCChhhHHHHHHHHHHhhcCCeeeccCCCCCCCCC--CCCCCccCCccccCCCCceEEEeeCC
Q 022907            1 MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFT--SPSTDEVGIDHWNELDDNYAFVYVKP   78 (290)
Q Consensus         1 m~~~~avL~~~~a~~p~i~s~~Dalal~vHa~ml~~GFrlvG~ge~~~~~~~--~~~~se~LP~gWN~~~~~YsfrY~h~   78 (290)
                      ||+...++.+|+++.|.|++++|+||++|||+++++||+|+++|+.+..++.  +....|++|++||+.++.|+|||+++
T Consensus         1 ~~~~~~~~ll~~s~~p~irkksD~li~~vH~~ltk~g~~~~~~G~~~~~~da~S~~~~c~~~pdgWN~d~d~Yal~Y~~~   80 (266)
T KOG4761|consen    1 MADAHGWMLLIRSAQPAIRKKSDLLIAVVHFLLTKHGYRCTGVGDPAGPQDAGSELLQCEVGPDGWNEDDDEYALRYTDP   80 (266)
T ss_pred             CchhHHHHHHHHhcccccccccceeeehhhHHHhhheeEEeeccCCCCchhhcccccccccCccccccCCceeEEEEecC
Confidence            8999999999999999999999999999999999999999999997765432  22245778999999999999999997


Q ss_pred             CCCCceEEEEEEeeCCeeEEeeeecCCCCeEEEEEccchhhcc-CCCChhHHHHhHHHHHHHHHHHHHhhhcCCCC--CC
Q 022907           79 EKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFVAK-NGSNYSDQFQNLEKLVTDVDKEIILQLYGSSK--PA  155 (290)
Q Consensus        79 ~~~s~~~lLK~~~mG~~LvVn~i~~~~~~v~slei~v~d~V~~-~~~d~~~~fk~l~~L~~~~k~~Ii~~L~~~~~--~~  155 (290)
                        .+++|||||+.|+++|+||+++.+++++++|||++++||++ +.++++.+|||+++|+++++++||+|+..-.+  .+
T Consensus        81 --gs~kyLvka~~~e~sLlinll~~~sk~~a~l~le~e~yvdes~~gd~~~~~kn~dklvtrlrsEiidpl~~~~tr~vs  158 (266)
T KOG4761|consen   81 --GSKKYLVKALAMEDSLLINLLASGSKEVAHLCLEPEDYVDESCEGDYDTQFKNLDKLVTRLRSEIIDPLVTVGTRRVS  158 (266)
T ss_pred             --cchhheeeeeecccceehhhhhcCCcceeEEEechhhccccccCCchhhhccCHHHHHHHHHHhhcCccccccceeec
Confidence              46999999999999999999999999999999999999999 77899999999999999999999999973333  22


Q ss_pred             CCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCC-CC--
Q 022907          156 SSERGEGS--RLNNPDFGYFVHQGPQPLPTGTPVPPI-NPDLGGDVYPGPGAGMYPRRGRFGGDGGMLIGPNHPG-FF--  229 (290)
Q Consensus       156 ~~t~~~~~--~~~~~p~~~~~~~~~~~~P~g~~~pp~-~~~g~~dl~p~~~~~~~p~~~~~~~~ggm~~~p~~p~-f~--  229 (290)
                      ++++...+  -.+++|+++++            .|++ .++|.+++.|.++.  +|.      -|||+++|-.-. |+  
T Consensus       159 s~~t~fpr~i~~d~dplrip~------------~pr~~gn~gps~~~pep~~--~P~------rGg~~~dpl~~Gp~g~~  218 (266)
T KOG4761|consen  159 SSETNFPRKIWKDEDPLRIPG------------TPRVAGNIGPSTHSPEPLD--GPR------RGGMIVDPLRSGPRGLI  218 (266)
T ss_pred             cCCcCCCcccccCCCCccCCC------------CCCcCCCcCcccccCCCCC--CCC------cCCccccccccCCCCCC
Confidence            22222222  24677888742            1121 26888888885444  333      356777654321 11  


Q ss_pred             CCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCC
Q 022907          230 GGEPDLPRGNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSSR  271 (290)
Q Consensus       230 ~~~~~~pg~~~~~~ppgarfDp~gp~~~~~~~P~~~~~~~~~  271 (290)
                      ...+|.++--||+||||||||||||.|.++++|+.+-+.|.+
T Consensus       219 ~~~pg~pn~~PG~vPpgarFdP~gP~g~~~~gpnpdh~~PP~  260 (266)
T KOG4761|consen  219 DPSPGLPNLPPGAVPPGARFDPFGPIGTSPPGPNPDHLPPPG  260 (266)
T ss_pred             CCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCccccCCCC
Confidence            145566663469999999999999999999999888776544


No 2  
>PF11566 PI31_Prot_N:  PI31 proteasome regulator N-terminal;  InterPro: IPR021625  PI31 is a regulatory subunit of the immuno-proteasome which is an inhibitor of the 20 S proteasome in vitro.PI31 is also an F-box protein Fbxo7.Skp1 binding partner which requires an N-terminal FP domain in both proteins for the interaction to occur via the FP beta sheets. The structure of PI31 FP domain contains a novel alpha/beta-fold and two intermolecular contact surfaces []. ; PDB: 2VT8_B.
Probab=100.00  E-value=1.2e-35  Score=254.34  Aligned_cols=139  Identities=36%  Similarity=0.569  Sum_probs=111.7

Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHHhhcCCeeeccCCCCCCCCCCCCCCccCCccccCCCCceEEEeeCCCCCCceEEEE
Q 022907            9 AVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELDDNYAFVYVKPEKGSKKVLVK   88 (290)
Q Consensus         9 ~~~~a~~p~i~s~~Dalal~vHa~ml~~GFrlvG~ge~~~~~~~~~~~se~LP~gWN~~~~~YsfrY~h~~~~s~~~lLK   88 (290)
                      -++.+++++|++++||||+++||+|+++||||+|++|++..++.+   +|+||++||++.++|+|||+|+++ +++|+||
T Consensus         2 l~~~~~~~~i~~~~D~l~~~~H~~~~~~gF~~vg~~~~~~~~~~~---~~~LP~~WN~~~~~Y~~~Y~~~~~-~~~~~lk   77 (155)
T PF11566_consen    2 LLFKSISPDIKSPHDALALFVHALMLESGFRLVGLGEDAKISSSE---SELLPEGWNSSSDSYAFRYKHPQS-SMQFLLK   77 (155)
T ss_dssp             ---HHCGGG--SHHHHHHHHHHHHHHCTTEEEEEESSS--TT------BSS--TTTTS-SSEEEEEEEETTS---EEEEE
T ss_pred             ccccccccccCCHHHHHHHHHHHHHHHcCCEEeccCCCcCccccc---cccCCHHHcCCCCeeEEEEecCCC-CCeEEEE
Confidence            356788999999999999999999999999999999998765432   689999999999999999999954 8999999


Q ss_pred             EEeeCCeeEEeeeecCCCCeEEEEEccchhhcc-------CCCChhHHHHh--HHHHHHHHHHHHHhhhcCC
Q 022907           89 CLVMNNKLLVDALADGASEPVHLEINVADFVAK-------NGSNYSDQFQN--LEKLVTDVDKEIILQLYGS  151 (290)
Q Consensus        89 ~~~mG~~LvVn~i~~~~~~v~slei~v~d~V~~-------~~~d~~~~fk~--l~~L~~~~k~~Ii~~L~~~  151 (290)
                      |++||++++||+|+.++++|++++|++++||++       ..+++.++|++  +++|+++|+++||+||...
T Consensus        78 ~~~~g~~lvIn~l~~~~~~v~~l~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~ii~~l~~~  149 (155)
T PF11566_consen   78 ALKMGNKLVINALNVGDDKVASLEINVDDYVSESFLPASEDPSDLSSVFKNKRLEDLISLFKTDIIQPLVPG  149 (155)
T ss_dssp             EEEETTEEEEEEEETTTTEEEEEEEEHHHHB-T------TSTT-HHHHBSS--HHHHHHHHHHHTTS-----
T ss_pred             EEEeCCeEEEEeeecCCCcEEEEEEcHHHhhhhhhcccccCCccHHHHHHhhhHHHHHHHHHHHhhcccCCc
Confidence            999999999999999999999999999999997       56789999999  9999999999999999744


No 3  
>PF08577 PI31_Prot_C:  PI31 proteasome regulator ;  InterPro: IPR013886  PI31 is a cellular regulator of proteasome formation and of proteasome-mediated antigen processing []. 
Probab=99.68  E-value=6e-17  Score=122.70  Aligned_cols=62  Identities=48%  Similarity=0.861  Sum_probs=45.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC------CCCCCcccCCCCCCCCCC----CCCCCCCC-CCCCCCCCCcCCCCC
Q 022907          192 PDLGGDVYPGPGAGMYPRRGRF------GGDGGMLIGPNHPGFFGG----EPDLPRGN-PWPIPPGARFDPYGP  254 (290)
Q Consensus       192 ~~g~~dl~p~~~~~~~p~~~~~------~~~ggm~~~p~~p~f~~~----~~~~pg~~-~~~~ppgarfDp~gp  254 (290)
                      +||++|||| +|+..++...++      +++||||++|+||+|...    ..+.++.+ +++||||||||||||
T Consensus         1 ~iG~~DL~P-~G~~~~~~~~p~~~~~~~~~~GGM~~~P~~p~f~~~~~~~~~g~~~~~p~~~vPPGARfDPfGP   73 (73)
T PF08577_consen    1 GIGDSDLYP-PGLPPPPPLRPFPDPPGGGGGGGMIFDPNHPIFGRPHQGGNPGGGGGLPPGGVPPGARFDPFGP   73 (73)
T ss_pred             CCCcccCCC-CCCCCCCCCCcccCCCCCCCCCCCCcCCCCCCCCcccccCCCCccccCCCCCCCCCCccCCCCC
Confidence            489999999 888755322111      246899999999999651    12334444 489999999999997


No 4  
>KOG4761 consensus Proteasome formation inhibitor PI31 [Posttranslational modification, protein turnover, chaperones]
Probab=83.93  E-value=37  Score=31.66  Aligned_cols=26  Identities=27%  Similarity=0.184  Sum_probs=15.8

Q ss_pred             CceEEEEEEee-CCeeEEeeeecCCCC
Q 022907           82 SKKVLVKCLVM-NNKLLVDALADGASE  107 (290)
Q Consensus        82 s~~~lLK~~~m-G~~LvVn~i~~~~~~  107 (290)
                      ..+|.|.-.-= -.+++|-+++++++-
T Consensus        70 ~d~Yal~Y~~~gs~kyLvka~~~e~sL   96 (266)
T KOG4761|consen   70 DDEYALRYTDPGSKKYLVKALAMEDSL   96 (266)
T ss_pred             CceeEEEEecCcchhheeeeeecccce
Confidence            35676665444 355777777776643


No 5  
>PF03633 Glyco_hydro_65C:  Glycosyl hydrolase family 65, C-terminal domain ;  InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=75.85  E-value=12  Score=26.04  Aligned_cols=36  Identities=14%  Similarity=0.254  Sum_probs=21.7

Q ss_pred             cCCccccCCCCceEEEeeCCCCCCceEEEEEEeeCCeeEEeeeec
Q 022907           59 VGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALAD  103 (290)
Q Consensus        59 ~LP~gWN~~~~~YsfrY~h~~~~s~~~lLK~~~mG~~LvVn~i~~  103 (290)
                      .||++|++  =+|.|+|+.       ..|++....+++.|.+...
T Consensus         2 ~LP~~w~~--l~F~~~~rg-------~~l~v~i~~~~v~v~~~~g   37 (54)
T PF03633_consen    2 RLPKQWSS--LSFRLRYRG-------HWLEVEITHEKVTVTLLSG   37 (54)
T ss_dssp             ---TT-SE--EEEEEEETT-------EEEEEEEETTEEEEEEEES
T ss_pred             cCCCccCE--eEEEEEECC-------EEEEEEEECCEEEEEEccC
Confidence            58999986  366677744       2355566678888887753


No 6  
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=36.64  E-value=6.2e+02  Score=27.95  Aligned_cols=13  Identities=23%  Similarity=0.685  Sum_probs=9.5

Q ss_pred             EEEEEccchhhcc
Q 022907          109 VHLEINVADFVAK  121 (290)
Q Consensus       109 ~slei~v~d~V~~  121 (290)
                      ..|+|++..+|+.
T Consensus       450 ~~l~id~~~liD~  462 (1102)
T KOG1924|consen  450 FRLDIDLTELIDK  462 (1102)
T ss_pred             hcccCcHHHHHHH
Confidence            4478888888775


No 7  
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=35.05  E-value=5.4e+02  Score=28.37  Aligned_cols=6  Identities=0%  Similarity=0.251  Sum_probs=2.3

Q ss_pred             ceEEEe
Q 022907           70 NYAFVY   75 (290)
Q Consensus        70 ~YsfrY   75 (290)
                      .|.+.|
T Consensus       387 ~f~lL~  392 (1102)
T KOG1924|consen  387 VFELLA  392 (1102)
T ss_pred             HHHHHH
Confidence            333333


No 8  
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=32.03  E-value=3.7e+02  Score=29.34  Aligned_cols=40  Identities=43%  Similarity=0.722  Sum_probs=23.5

Q ss_pred             CCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCC
Q 022907          216 DGGMLIGPNHPGFFGGEPDLPRGNPWPIPPGARFDPYGPPDVPGLEP  262 (290)
Q Consensus       216 ~ggm~~~p~~p~f~~~~~~~pg~~~~~~ppgarfDp~gp~~~~~~~P  262 (290)
                      -|||+--+-|++|.++ +|   +.  ++||=.-||+=||+|. +|.|
T Consensus       689 ~~~~~~m~P~~~~~g~-pg---~~--~~PPPP~~~~~gpgG~-~f~P  728 (894)
T KOG0132|consen  689 RGGMRHMPPPPSHRGG-PG---GH--GIPPPPFFDRGGPGGP-PFPP  728 (894)
T ss_pred             CCCCCCCCCCCCCCCC-CC---CC--CCCCCccccCCCCCCC-CCCC
Confidence            3567766667777543 22   11  3444477788787764 4766


No 9  
>PRK07252 hypothetical protein; Provisional
Probab=25.68  E-value=1.5e+02  Score=24.24  Aligned_cols=61  Identities=15%  Similarity=0.123  Sum_probs=35.8

Q ss_pred             EeeCCeeEEeeeecCCCCeEEEEEccchhhcc----------CCCChhHHHHhHHHHHHHHHHHHHhhhcCC
Q 022907           90 LVMNNKLLVDALADGASEPVHLEINVADFVAK----------NGSNYSDQFQNLEKLVTDVDKEIILQLYGS  151 (290)
Q Consensus        90 ~~mG~~LvVn~i~~~~~~v~slei~v~d~V~~----------~~~d~~~~fk~l~~L~~~~k~~Ii~~L~~~  151 (290)
                      .++|+.+.|.++....+ -..+.+.+.+.-.+          +.++....|+.|++-+.+++++-|+-|.++
T Consensus        48 ~~vGD~V~VkI~~iD~~-~~ri~lSlk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (120)
T PRK07252         48 LKVGEEVLVQVVDFDEY-TGKASLSLRTLEEEKQHFPHRHRFSNSRHKIGFKPLEEQLPIWIEEALQYLKKK  118 (120)
T ss_pred             cCCCCEEEEEEEEEeCC-CCEEEEEEeecccCccccCcccccccccccCCchhHHHHHHHHHHHHHHHhhcc
Confidence            56777777776654321 12233332222111          122444457889999999999999988643


No 10 
>PF12565 DUF3747:  Protein of unknown function (DUF3747);  InterPro: IPR022222  This family of proteins is found in bacteria. Proteins in this family are typically between 215 and 413 amino acids in length. There is a conserved DSNGYS sequence motif. 
Probab=25.62  E-value=2.4e+02  Score=25.17  Aligned_cols=36  Identities=11%  Similarity=0.116  Sum_probs=30.4

Q ss_pred             CCceEEEeeCCCCCCceEEEEEEeeCCeeEEeeeecC
Q 022907           68 DDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADG  104 (290)
Q Consensus        68 ~~~YsfrY~h~~~~s~~~lLK~~~mG~~LvVn~i~~~  104 (290)
                      .+-|++|-.-. +-+..|.|++++.++.|+.-++...
T Consensus        95 SNGYSlR~~G~-Dlg~~YrLrlv~~~~el~L~a~~~~  130 (181)
T PF12565_consen   95 SNGYSLRIGGQ-DLGLRYRLRLVQRNGELVLVATPRR  130 (181)
T ss_pred             CCCcEEEECCe-ecCceEEEEEEEECCEEEEEecCCC
Confidence            46799998775 6688999999999999999887653


No 11 
>PF11532 HnRNP_M:  Heterogeneous nuclear ribonucleoprotein M;  InterPro: IPR024666 Heterogeneous nuclear ribonucleoproteins (hnRNPs) bind directly to nascent RNA polymerase II transcripts and play an important role in both transcript-specific packaging and alternative splicing of pre-mRNAs []. hnRNP M proteins are an abundant group of hnRNPs that have been shown to bind avidly to poly(G) and poly(U) RNA homopolymers []. hnRNP M family members are able to induce exon skipping and promote exon inclusion, suggesting that the proteins may broadly contribute to the fidelity of splice site recognition and alternative splicing regulation []. This entry represents the N-terminal PY nuclear localisation signal of heterogeneous nuclear ribonucleoprotein M [].; PDB: 2OT8_C.
Probab=25.49  E-value=26  Score=22.04  Aligned_cols=9  Identities=56%  Similarity=1.320  Sum_probs=1.9

Q ss_pred             CCCcCCCCC
Q 022907          246 GARFDPYGP  254 (290)
Q Consensus       246 garfDp~gp  254 (290)
                      |.||+||+=
T Consensus        18 g~rfEPY~N   26 (30)
T PF11532_consen   18 GNRFEPYAN   26 (30)
T ss_dssp             -----SS--
T ss_pred             CcccccccC
Confidence            589999963


No 12 
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=24.49  E-value=1.5e+02  Score=22.00  Aligned_cols=19  Identities=21%  Similarity=0.426  Sum_probs=14.9

Q ss_pred             hHHHHhHHHHHHHHHHHHH
Q 022907          127 SDQFQNLEKLVTDVDKEII  145 (290)
Q Consensus       127 ~~~fk~l~~L~~~~k~~Ii  145 (290)
                      ...|.+|.+|++.++.+-+
T Consensus        64 ~~~f~sl~eLv~~y~~~~~   82 (94)
T cd00173          64 GRSFPSLPELIEHYQKNPL   82 (94)
T ss_pred             CCccCCHHHHHHHHhhCcc
Confidence            3457899999999987655


No 13 
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=23.88  E-value=1.5e+02  Score=21.73  Aligned_cols=17  Identities=29%  Similarity=0.475  Sum_probs=13.0

Q ss_pred             hHHHHhHHHHHHHHHHH
Q 022907          127 SDQFQNLEKLVTDVDKE  143 (290)
Q Consensus       127 ~~~fk~l~~L~~~~k~~  143 (290)
                      ...|.+|.+|++.++..
T Consensus        65 ~~~F~sl~eLI~~y~~~   81 (84)
T smart00252       65 GRKFPSLVELVEHYQKN   81 (84)
T ss_pred             CCccCCHHHHHHHHhhC
Confidence            35678899999988764


Done!