Query 022907
Match_columns 290
No_of_seqs 133 out of 251
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 13:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vt8_A HPI31, PI31, proteasome 100.0 4.2E-40 1.4E-44 280.6 14.0 146 3-152 2-148 (153)
2 1q38_A Fibronectin; amyloid fi 36.8 32 0.0011 25.8 3.6 57 63-119 3-77 (89)
3 2yh5_A DAPX protein, BAMC; lip 32.2 85 0.0029 24.8 5.7 66 18-104 19-97 (127)
4 3twe_A Alpha4H; unknown functi 31.3 33 0.0011 19.8 2.1 18 125-142 2-19 (27)
5 1nb0_A Hypothetical protein FL 26.2 65 0.0022 26.3 4.1 48 95-147 76-125 (147)
6 1xrd_A LH-1, light-harvesting 25.8 34 0.0011 23.4 1.8 19 24-42 23-42 (52)
7 2ot8_C HnRNP M, heterogeneous 25.1 22 0.00074 21.5 0.7 10 245-254 17-26 (30)
8 1n08_A Putative riboflavin kin 24.8 69 0.0023 26.6 4.0 47 96-147 95-143 (163)
9 3rrs_A Cellobiose phosphorylas 24.3 1.1E+02 0.0039 31.5 6.4 50 57-114 758-821 (822)
10 1lgh_A LH II, B800/850, light 23.5 42 0.0014 23.3 2.0 16 24-39 28-44 (56)
11 3bnw_A Riboflavin kinase, puta 21.3 87 0.003 26.5 4.0 48 95-147 98-147 (181)
12 2r39_A FIXG-related protein; s 20.9 1.5E+02 0.0052 22.5 5.2 51 60-113 26-79 (118)
No 1
>2vt8_A HPI31, PI31, proteasome inhibitor PI31 subunit; polymorphism, hydrolase inhibitor; 2.6A {Homo sapiens}
Probab=100.00 E-value=4.2e-40 Score=280.60 Aligned_cols=146 Identities=19% Similarity=0.332 Sum_probs=132.2
Q ss_pred ChHHHHHHHHHHCCCCCChhhHHHHHHHHHHhhcCCeeeccCCCCCCCCCCCCCCccCCccccCCCCceEEEeeCCCCCC
Q 022907 3 NDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELDDNYAFVYVKPEKGS 82 (290)
Q Consensus 3 ~~~avL~~~~a~~p~i~s~~Dalal~vHa~ml~~GFrlvG~ge~~~~~~~~~~~se~LP~gWN~~~~~YsfrY~h~~~~s 82 (290)
+..+++.++++++++|++++||||+++||+|+++||||+|+||++..++ +.+|+||++||++.++|+|||+|+++ +
T Consensus 2 ~~~~~e~l~~s~~~~i~~~~Dal~~~vH~~m~~~gfr~~g~g~~~~~~~---~~se~LP~~WN~~~~~Y~f~Y~h~~~-~ 77 (153)
T 2vt8_A 2 HMAGLEVLFASAAPAITCRQDALVCFLHWEVVTHGYCGLGVGDQPGPND---KKSELLPAGWNNNKDLYVLRYEYKDG-S 77 (153)
T ss_dssp CCSCHHHHHHHHGGGCCSHHHHHHHHHHHHHHTTTEEEEEESSSCCTTC---CCBSSCCTTTTSCSSEEEEEEEESCC--
T ss_pred cchHHHHHHHhhhcccCCHHHHHHHHHHHHHHhcCCEeccCCCccCccc---ccccCCCHHHcCCCCeEEEEeccCCC-C
Confidence 4457889999999999999999999999999999999999999987432 46799999999888999999999954 9
Q ss_pred ceEEEEEEeeCCeeEEeeeecCCCCeEEEEEccchhhcc-CCCChhHHHHhHHHHHHHHHHHHHhhhcCCC
Q 022907 83 KKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFVAK-NGSNYSDQFQNLEKLVTDVDKEIILQLYGSS 152 (290)
Q Consensus 83 ~~~lLK~~~mG~~LvVn~i~~~~~~v~slei~v~d~V~~-~~~d~~~~fk~l~~L~~~~k~~Ii~~L~~~~ 152 (290)
++|+|||++||++|+||+++.++++|++++|++++||++ ..+++.++|+++++|+++||++||+||....
T Consensus 78 ~~~lLk~~~lg~~lvin~l~~~~~~v~~l~i~~~~~V~~~~~~~~~~~~~~l~~L~~~~k~~li~~l~~~~ 148 (153)
T 2vt8_A 78 RKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEHLGDFHRTYKNSEELRSRIVSGIITPIHEQW 148 (153)
T ss_dssp CEEEEEEEEETTEEEEEEEETTTTEEEEEEEEHHHHBCTTSTTCHHHHBSCHHHHHHHHHHHTTSCC----
T ss_pred CeEEEEEEEeCCEEEEEEEecCCCCEEEEEEcHHHhhcccccCCHHHHhhhHHHHHHHHHHHhhhhhcCCC
Confidence 999999999999999999999999999999999999999 7789999999999999999999999997543
No 2
>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix, dynamic fluctuations, conformational exchange, chaps, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=36.85 E-value=32 Score=25.83 Aligned_cols=57 Identities=11% Similarity=0.027 Sum_probs=39.8
Q ss_pred cccC--C--CCceEEEeeCCCCC-----------CceEEEEEEeeCCeeEEeeee---cCCCCeEEEEEccchhh
Q 022907 63 HWNE--L--DDNYAFVYVKPEKG-----------SKKVLVKCLVMNNKLLVDALA---DGASEPVHLEINVADFV 119 (290)
Q Consensus 63 gWN~--~--~~~YsfrY~h~~~~-----------s~~~lLK~~~mG~~LvVn~i~---~~~~~v~slei~v~d~V 119 (290)
+||+ + -+.|-|+|+-+... -..|.++.++=|-+-++.+++ -+..++.+|++.+..-.
T Consensus 3 qWnap~~shi~~YIL~w~pk~~~~~wKev~IPgh~nSYtIsGLkPGvtYegQLisV~r~g~~EvtrfdfTT~~~~ 77 (89)
T 1q38_A 3 GSNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTS 77 (89)
T ss_dssp CCCCSSCSSCSEEEEEEEETTTTCCCEEEEECSSSSCCCCCCCCTTCCEEEEEEEECTTSCCCEEEEEECSSSSC
T ss_pred cccCCCcccceeeEEEEEecCCCCccEEEEcCCccceEEEeccCCCcEEEEEEEeeeecccCCceEEEEEeccCC
Confidence 6883 2 47899999765331 246777888888777666654 45888999999876543
No 3
>2yh5_A DAPX protein, BAMC; lipid binding protein, lipoprotein, BAM complex; 1.25A {Escherichia coli} PDB: 3sns_A
Probab=32.19 E-value=85 Score=24.82 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=44.9
Q ss_pred CCChhhHHHHHHHHHHhhcCCeeeccCCCCCCCCCCCCCCccCCccccCCCCceEEEeeCCC-------------CCCce
Q 022907 18 FRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELDDNYAFVYVKPE-------------KGSKK 84 (290)
Q Consensus 18 i~s~~Dalal~vHa~ml~~GFrlvG~ge~~~~~~~~~~~se~LP~gWN~~~~~YsfrY~h~~-------------~~s~~ 84 (290)
++.++|..---+=..|=+.||...-. |.+.+.|-++|+.++ ....+
T Consensus 19 l~~~fdraW~rvg~ALdr~Gf~V~Dr---------------------drs~G~y~V~Y~~~~~gf~~~lg~~~~~~~~~~ 77 (127)
T 2yh5_A 19 VRGPFNVVWQRLPAALEKVGMKVTDS---------------------TRSQGNMAVTYKPLSDSDWQELGASDPGLASGD 77 (127)
T ss_dssp EESCHHHHHHHHHHHHHHTTEEEEEE---------------------EGGGTEEEEEECCCCHHHHHHHTSCCCCCCSEE
T ss_pred EcCCHHHHHHHHHHHHHhCCCeEEee---------------------eccCeEEEEEeCCCCcchHHHhcCCCccCCCCC
Confidence 34455555555556666778887632 455788888887652 13468
Q ss_pred EEEEEEeeCCeeEEeeeecC
Q 022907 85 VLVKCLVMNNKLLVDALADG 104 (290)
Q Consensus 85 ~lLK~~~mG~~LvVn~i~~~ 104 (290)
|.|++-.+|+...|++++..
T Consensus 78 Y~i~v~~~g~~t~V~v~d~~ 97 (127)
T 2yh5_A 78 YKLQVGDLDNRSSLQFIDPK 97 (127)
T ss_dssp EEEEEEEETTEEEEEEECTT
T ss_pred EEEEEEeCCCceEEEEECCC
Confidence 99999999988888877643
No 4
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=31.26 E-value=33 Score=19.79 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=13.3
Q ss_pred ChhHHHHhHHHHHHHHHH
Q 022907 125 NYSDQFQNLEKLVTDVDK 142 (290)
Q Consensus 125 d~~~~fk~l~~L~~~~k~ 142 (290)
+.+.+||.|++|-+++++
T Consensus 2 nadelykeledlqerlrk 19 (27)
T 3twe_A 2 NADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 456789988888877653
No 5
>1nb0_A Hypothetical protein FLJ11149; beta barrel, transferase; HET: ADP; 1.70A {Homo sapiens} SCOP: b.43.5.1 PDB: 1nb9_A* 1p4m_A* 1q9s_A*
Probab=26.19 E-value=65 Score=26.27 Aligned_cols=48 Identities=13% Similarity=0.270 Sum_probs=30.6
Q ss_pred eeEEeeeecCCCCe--EEEEEccchhhccCCCChhHHHHhHHHHHHHHHHHHHhh
Q 022907 95 KLLVDALADGASEP--VHLEINVADFVAKNGSNYSDQFQNLEKLVTDVDKEIILQ 147 (290)
Q Consensus 95 ~LvVn~i~~~~~~v--~slei~v~d~V~~~~~d~~~~fk~l~~L~~~~k~~Ii~~ 147 (290)
++++|++..-+..+ ..++|..-+|+... ..|.++++|+++++.++...
T Consensus 76 ~vEvhil~df~~dlYG~~i~v~f~~~lR~E-----~kF~sle~L~~qI~~D~~~a 125 (147)
T 1nb0_A 76 SMETHIMHTFKEDFYGEILNVAIVGYLRPE-----KNFDSLESLISAIQGDIEEA 125 (147)
T ss_dssp EEEEEESSCCSSCCTTSEEEEEEEEEEECC-----CCCSSHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCccCCCEEEEEEehhccCC-----cCCCCHHHHHHHHHHHHHHH
Confidence 36777772223334 46677777777762 22557888988888887654
No 6
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=25.76 E-value=34 Score=23.41 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhc-CCeeec
Q 022907 24 KLAFAVHATFLAS-GHVLTA 42 (290)
Q Consensus 24 alal~vHa~ml~~-GFrlvG 42 (290)
++|++||.++++. +|.-+.
T Consensus 23 vlAl~IHfilLSt~~fNWl~ 42 (52)
T 1xrd_A 23 VLALLIHFILLSTERFNWLE 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCccccc
Confidence 5899999999987 575554
No 7
>2ot8_C HnRNP M, heterogeneous nuclear ribonucleoprotein M; heat repeat, nuclear import complex, karyopherin, transport protein; 3.10A {Homo sapiens}
Probab=25.09 E-value=22 Score=21.46 Aligned_cols=10 Identities=50% Similarity=1.135 Sum_probs=7.6
Q ss_pred CCCCcCCCCC
Q 022907 245 PGARFDPYGP 254 (290)
Q Consensus 245 pgarfDp~gp 254 (290)
-|.||+||+=
T Consensus 17 ggnrfepY~N 26 (30)
T 2ot8_C 17 GGNRFEPYAN 26 (30)
T ss_pred CCcccccccC
Confidence 3589999964
No 8
>1n08_A Putative riboflavin kinase; phophoryl transferases, flavin cofactors, metal binding; HET: ADP; 1.60A {Schizosaccharomyces pombe} SCOP: b.43.5.1 PDB: 1n05_A* 1n07_A* 1n06_A*
Probab=24.75 E-value=69 Score=26.65 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=28.9
Q ss_pred eEEeeeecCCCCe--EEEEEccchhhccCCCChhHHHHhHHHHHHHHHHHHHhh
Q 022907 96 LLVDALADGASEP--VHLEINVADFVAKNGSNYSDQFQNLEKLVTDVDKEIILQ 147 (290)
Q Consensus 96 LvVn~i~~~~~~v--~slei~v~d~V~~~~~d~~~~fk~l~~L~~~~k~~Ii~~ 147 (290)
+++|++..-++.+ ..++|..-+|+... ..|.++++|+++++.++...
T Consensus 95 vEvhil~df~~dlYG~~i~V~f~~~lR~E-----~kF~sle~L~~qI~~D~~~a 143 (163)
T 1n08_A 95 AEVHLIERQGEDFYEEIMRVIVLGYIRPE-----LNYAGLDKLIEDIHTDIRVA 143 (163)
T ss_dssp EEEEETTCCSCCCTTCEEEEEEEEEEECC-----CCCCCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCccCCCEEEEEEHHhccCC-----CCCCCHHHHHHHHHHHHHHH
Confidence 6677662223334 46666777777661 22557888888888876653
No 9
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=24.30 E-value=1.1e+02 Score=31.54 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=31.5
Q ss_pred CccCCccccCCCCceEEEeeCCCCCCceEEEEEEeeC------CeeEEeeeec--------CCCCeEEEEEc
Q 022907 57 DEVGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMN------NKLLVDALAD--------GASEPVHLEIN 114 (290)
Q Consensus 57 se~LP~gWN~~~~~YsfrY~h~~~~s~~~lLK~~~mG------~~LvVn~i~~--------~~~~v~slei~ 114 (290)
...||+.|+ .|+|+|+... ..|.|++.+ + .++.||+... .+.+.+.+++.
T Consensus 758 ~P~LP~~w~----~~~~~~~~~g---~~~~I~v~~-~~~~~g~~~~~~dg~~~~~~~i~~~~~g~~~~v~v~ 821 (822)
T 3rrs_A 758 DPQIGPDVP----SFTVTRVARG---ATYEITVTN-SGTDGSRGRLVVDGTPVEGNLVPYAPAGSTVRVDVT 821 (822)
T ss_dssp CCCCCTTCC----EEEEEEEETT---EEEEEEEEC-CCCTTCCCEEEETTEECSSSEEECCCTTCEEEEEEE
T ss_pred eCCCCCcCC----cEEEEEEECC---EEEEEEEEe-CCcCCCcEEEEECCEEccCCeeeecCCCCEEEEEEE
Confidence 468999997 4777776653 678887776 3 2466665332 24455666553
No 10
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=23.46 E-value=42 Score=23.28 Aligned_cols=16 Identities=50% Similarity=0.629 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhc-CCe
Q 022907 24 KLAFAVHATFLAS-GHV 39 (290)
Q Consensus 24 alal~vHa~ml~~-GFr 39 (290)
.++++||+.++.+ +|.
T Consensus 28 vlAllIH~~lLs~~~fn 44 (56)
T 1lgh_A 28 VVAIAVHAAVLAAPGFN 44 (56)
T ss_dssp HHHHHHHHHHHHSGGGC
T ss_pred HHHHHHHHHHHcCCCcc
Confidence 6899999999987 664
No 11
>3bnw_A Riboflavin kinase, putative; APO structure, structural genomics, structural genomics of P protozoa consortium, SGPP, transferase; 2.40A {Trypanosoma brucei}
Probab=21.28 E-value=87 Score=26.50 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=29.3
Q ss_pred eeEEeeeecCCCCe--EEEEEccchhhccCCCChhHHHHhHHHHHHHHHHHHHhh
Q 022907 95 KLLVDALADGASEP--VHLEINVADFVAKNGSNYSDQFQNLEKLVTDVDKEIILQ 147 (290)
Q Consensus 95 ~LvVn~i~~~~~~v--~slei~v~d~V~~~~~d~~~~fk~l~~L~~~~k~~Ii~~ 147 (290)
+++|+++..-++.+ ..++|.+-+|+... ..|.++++|+++++.++...
T Consensus 98 ~vEvhilhDF~~DlYG~~i~V~fl~~LR~E-----~kF~sle~L~~QI~~Di~~A 147 (181)
T 3bnw_A 98 TVEPYFLHEFGWDFYGAVVKIIVLGEIRSM-----GSFHSLQALVDTIKSDVQFT 147 (181)
T ss_dssp EEEEEESSCCSSCCTTCEEEEEEEEEEEEC-----CCCSSHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCccCCCEEEEEEehhhcCC-----CCCCCHHHHHHHHHHHHHHH
Confidence 46677662223334 45666667777661 22557888888888876653
No 12
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=20.88 E-value=1.5e+02 Score=22.47 Aligned_cols=51 Identities=8% Similarity=0.104 Sum_probs=31.7
Q ss_pred CCccccCCCCceEEEeeCCCCCCceEEEEEEeeCCeeEEee---eecCCCCeEEEEE
Q 022907 60 GIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDA---LADGASEPVHLEI 113 (290)
Q Consensus 60 LP~gWN~~~~~YsfrY~h~~~~s~~~lLK~~~mG~~LvVn~---i~~~~~~v~slei 113 (290)
+.+||= .+.|+|+-.++.+....|.|++.-+++ +.+.. +.++.+++.++.+
T Consensus 26 ~~dG~I--~N~Ytlki~Nkt~~~~~~~l~v~g~~~-l~~~g~~~i~v~~g~~~~~~v 79 (118)
T 2r39_A 26 NSAGEV--ENTYTLKVINKTQQVQEYNLDVKGLND-VSWYGKQTIQVEPGEVLNLPM 79 (118)
T ss_dssp --CCSE--EEEEEEEEEECSSSCEEEEEEEESCSS-CEEESCCEEEECTTCEEEEEE
T ss_pred cCCCeE--EEEEEEEEEECCCCCEEEEEEEeCCcc-cEEeCCCcEEECCCCEEEEEE
Confidence 445553 369999999988778899999976544 44432 4444444444433
Done!