Query 022907
Match_columns 290
No_of_seqs 133 out of 251
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 13:07:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022907.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022907hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lgha_ f.3.1.1 (A:) Light-har 29.4 5.9 0.00043 25.0 0.2 24 22-45 26-50 (56)
2 d1xrda1 f.3.1.1 (A:1-52) Light 27.1 15 0.0011 23.5 1.8 19 24-42 23-42 (52)
3 d1n08a_ b.43.5.1 (A:) Riboflav 26.1 30 0.0022 26.6 4.0 49 95-148 86-136 (154)
4 d1qada_ d.93.1.1 (A:) Phosphat 25.2 33 0.0024 23.9 3.9 18 128-145 73-90 (107)
5 d1x5ka1 b.1.2.1 (A:8-118) Neog 23.4 71 0.0052 20.9 5.4 57 60-116 36-92 (111)
6 d1erna1 b.1.2.1 (A:10-116) Ery 21.1 28 0.002 25.4 2.7 48 69-116 42-92 (107)
7 d1cfba2 b.1.2.1 (A:710-814) Ne 18.3 1.2E+02 0.0086 20.0 5.7 19 60-78 29-47 (105)
8 d2d9qb2 b.1.2.1 (B:204-308) Gr 17.3 1.3E+02 0.0096 19.6 5.8 46 69-115 38-83 (105)
9 d1iarb2 b.1.2.1 (B:97-197) Int 17.3 97 0.0071 20.0 4.9 46 70-115 37-82 (101)
10 d1cd9b2 b.1.2.1 (B:108-213) Gr 17.1 1.4E+02 0.01 19.7 6.4 47 68-115 38-84 (106)
No 1
>d1lgha_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=29.37 E-value=5.9 Score=24.97 Aligned_cols=24 Identities=42% Similarity=0.481 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHhhc-CCeeeccCC
Q 022907 22 FDKLAFAVHATFLAS-GHVLTATGP 45 (290)
Q Consensus 22 ~Dalal~vHa~ml~~-GFrlvG~ge 45 (290)
..++++++|+..++. ||.-+.+|.
T Consensus 26 atvvaiavhaavlaapgfnwialga 50 (56)
T d1lgha_ 26 ATVVAIAVHAAVLAAPGFNWIALGA 50 (56)
T ss_dssp HHHHHHHHHHHHHHSGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCeeeecc
Confidence 346889999998876 998877653
No 2
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=27.11 E-value=15 Score=23.54 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhc-CCeeec
Q 022907 24 KLAFAVHATFLAS-GHVLTA 42 (290)
Q Consensus 24 alal~vHa~ml~~-GFrlvG 42 (290)
+||++||.++++. .|.-+.
T Consensus 23 ~LAl~IHfiLLSt~rfNWle 42 (52)
T d1xrda1 23 VLALLIHFILLSTERFNWLE 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcccccc
Confidence 5899999999977 455543
No 3
>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=26.15 E-value=30 Score=26.64 Aligned_cols=49 Identities=16% Similarity=0.318 Sum_probs=32.0
Q ss_pred eeEEeeeecCCCCe--EEEEEccchhhccCCCChhHHHHhHHHHHHHHHHHHHhhh
Q 022907 95 KLLVDALADGASEP--VHLEINVADFVAKNGSNYSDQFQNLEKLVTDVDKEIILQL 148 (290)
Q Consensus 95 ~LvVn~i~~~~~~v--~slei~v~d~V~~~~~d~~~~fk~l~~L~~~~k~~Ii~~L 148 (290)
.+++|+++-..+.+ ..++|.+-+|+.+. ..|.++++|++++++++....
T Consensus 86 ~~Evhildf~~~dlYg~~i~V~~~~~iR~e-----~kF~s~e~L~~qI~~D~~~ar 136 (154)
T d1n08a_ 86 SAEVHLIERQGEDFYEEIMRVIVLGYIRPE-----LNYAGLDKLIEDIHTDIRVAL 136 (154)
T ss_dssp EEEEEETTCCSCCCTTCEEEEEEEEEEECC-----CCCCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecccchhhcCEEEEEEEeeeccCC-----cccCCHHHHHHHHHHHHHHHH
Confidence 46677776432223 46677777888772 225578888888888876543
No 4
>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.21 E-value=33 Score=23.94 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=14.6
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 022907 128 DQFQNLEKLVTDVDKEII 145 (290)
Q Consensus 128 ~~fk~l~~L~~~~k~~Ii 145 (290)
..|.+|.+|++-|+++-+
T Consensus 73 ~~F~sl~~LI~~Y~~~~l 90 (107)
T d1qada_ 73 NLYSSLKELVLHYQHTSL 90 (107)
T ss_dssp CCBSSHHHHHHHHHHSCG
T ss_pred CccCCHHHHHHHHHhCcc
Confidence 458899999999987644
No 5
>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.37 E-value=71 Score=20.93 Aligned_cols=57 Identities=16% Similarity=0.067 Sum_probs=30.2
Q ss_pred CCccccCCCCceEEEeeCCCCCCceEEEEEEeeCCeeEEeeeecCCCCeEEEEEccc
Q 022907 60 GIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVA 116 (290)
Q Consensus 60 LP~gWN~~~~~YsfrY~h~~~~s~~~lLK~~~mG~~LvVn~i~~~~~~v~slei~v~ 116 (290)
-|..+|..-..|.+.|....+....-..+....++...+.+-.+.....+.+.|...
T Consensus 36 ~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~ 92 (111)
T d1x5ka1 36 PPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQAR 92 (111)
T ss_dssp CCSCCSSCCCEEEEEEESCSSSCTTTSEEEEESTTCSEEEECSCCSSSEEEEEEEEE
T ss_pred ccccCCCceeeeEEeeeecCCCCcceeEEEEeCCCeeEEEECCCCCCCEEEEEEEEE
Confidence 455566556789999976543222111222333444333333444566777777554
No 6
>d1erna1 b.1.2.1 (A:10-116) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.13 E-value=28 Score=25.40 Aligned_cols=48 Identities=21% Similarity=0.128 Sum_probs=31.4
Q ss_pred CceEEEeeCCCCCCceEEEEEEeeCCeeEEeeeec---CCCCeEEEEEccc
Q 022907 69 DNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALAD---GASEPVHLEINVA 116 (290)
Q Consensus 69 ~~YsfrY~h~~~~s~~~lLK~~~mG~~LvVn~i~~---~~~~v~slei~v~ 116 (290)
+.|+|-|..+....+.+-|+..++...-+.++=.. +..-...++|.|.
T Consensus 42 ~~Y~f~Y~y~gE~~k~C~L~~~~~~~~~~r~~C~fP~~dv~lF~~l~l~V~ 92 (107)
T d1erna1 42 GNYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVT 92 (107)
T ss_dssp GGEEEEEECTTSCCEECCCEEECCTTSEEEEEEECCGGGSSSCCCEEEEEE
T ss_pred ccEEEEEEcCCCCCcccccEEEEcCCCcEEEEEECCccceEEEEEEEEEEE
Confidence 47999999876667888888888766655554221 1233455566554
No 7
>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}
Probab=18.34 E-value=1.2e+02 Score=19.96 Aligned_cols=19 Identities=11% Similarity=0.020 Sum_probs=14.5
Q ss_pred CCccccCCCCceEEEeeCC
Q 022907 60 GIDHWNELDDNYAFVYVKP 78 (290)
Q Consensus 60 LP~gWN~~~~~YsfrY~h~ 78 (290)
-+..||..--.|.++|+..
T Consensus 29 ~~~~~ng~i~~Y~I~y~~~ 47 (105)
T d1cfba2 29 PEIEHNAPNFHYYVSWKRD 47 (105)
T ss_dssp CGGGTCSSSCEEEEEEEES
T ss_pred ChhhcCceEEEEEEEeeee
Confidence 4566887667999999765
No 8
>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.29 E-value=1.3e+02 Score=19.61 Aligned_cols=46 Identities=9% Similarity=-0.027 Sum_probs=27.8
Q ss_pred CceEEEeeCCCCCCceEEEEEEeeCCeeEEeeeecCCCCeEEEEEcc
Q 022907 69 DNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINV 115 (290)
Q Consensus 69 ~~YsfrY~h~~~~s~~~lLK~~~mG~~LvVn~i~~~~~~v~slei~v 115 (290)
-.|.++|+... ......+.....+....+.+..+.....+.+.|..
T Consensus 38 ~~y~i~y~~~~-~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frVra 83 (105)
T d2d9qb2 38 QKCELRHKPQR-GEASWALVGPLPLEALQYELCGLLPATAYTLQIRC 83 (105)
T ss_dssp EEEEEEEEESS-SCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEE
T ss_pred EEEEEEEEecC-CccceeeeecccCCcceeEEecccCCeEEEEEEEE
Confidence 46999998653 33444444445566555555455566677777754
No 9
>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.27 E-value=97 Score=19.99 Aligned_cols=46 Identities=9% Similarity=0.044 Sum_probs=25.3
Q ss_pred ceEEEeeCCCCCCceEEEEEEeeCCeeEEeeeecCCCCeEEEEEcc
Q 022907 70 NYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINV 115 (290)
Q Consensus 70 ~YsfrY~h~~~~s~~~lLK~~~mG~~LvVn~i~~~~~~v~slei~v 115 (290)
.|.++|+...+....-..++...+....+.+-++.....+.+.|..
T Consensus 37 ~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVrA 82 (101)
T d1iarb2 37 TYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRA 82 (101)
T ss_dssp EEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEEEEE
T ss_pred EEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEEEEEEE
Confidence 4999998764444444455555566555554455555667777653
No 10
>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.13 E-value=1.4e+02 Score=19.72 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=25.5
Q ss_pred CCceEEEeeCCCCCCceEEEEEEeeCCeeEEeeeecCCCCeEEEEEcc
Q 022907 68 DDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINV 115 (290)
Q Consensus 68 ~~~YsfrY~h~~~~s~~~lLK~~~mG~~LvVn~i~~~~~~v~slei~v 115 (290)
.-.|.++|+.......-..+. ....+...+.+-.+.....+.+.|..
T Consensus 38 ~~~Y~i~y~~~~~~~~w~~v~-~~~~~~~~~~l~~L~p~t~Y~frVra 84 (106)
T d1cd9b2 38 EQECELRYQPQLKGANWTLVF-HLPSSKDQFELCGLHQAPVYTLQMRC 84 (106)
T ss_dssp CEEEEEEEEESSTTCCCEEEE-EEESCEEEEEECCCCSCSCEEEEEEE
T ss_pred ceEEEEEEeeccccccceeee-cccCCceEEEEeccCCCeEEEEEEEE
Confidence 457999998653322222222 33345555554455555667776643
Done!