BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022908
         (290 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
           E2.2k+.Pi State
 pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
           Potassium And Ouabain
          Length = 1028

 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 9/59 (15%)

Query: 178 DNPVLLRKISYFLQVIVTEAAKVIQNSSKNWKVNAFTGEVESMSRMASLTEGTAVLRSP 236
           +NP+  R I++F    V   A+          V  +TG+   M R+A+L  G  V R+P
Sbjct: 239 ENPLETRNIAFFSTNCVEGTAR---------GVVVYTGDRTVMGRIATLASGLEVGRTP 288


>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
           Mycobacterium Avium
 pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
           Mycobacterium Avium
          Length = 407

 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 182 LLRKISYFLQVIVTEAAKVIQNSSKNWKVNAFTGEVESMSRMASLTEGTAVLRSPSKSWK 241
           L R  +  L+ + T A KV       W      G VESMSR+   ++G A    P  +++
Sbjct: 92  LNRFCASGLEAVNTAAQKV----RSGWDDLVLAGGVESMSRVPMGSDGGAWATDPETNYR 147

Query: 242 MAGLPR 247
           +  +P+
Sbjct: 148 IGFVPQ 153


>pdb|2RCF|A Chain A, Carboxysome Shell Protein, Orfa From H. Neapolitanus
 pdb|2RCF|B Chain B, Carboxysome Shell Protein, Orfa From H. Neapolitanus
 pdb|2RCF|C Chain C, Carboxysome Shell Protein, Orfa From H. Neapolitanus
 pdb|2RCF|D Chain D, Carboxysome Shell Protein, Orfa From H. Neapolitanus
 pdb|2RCF|E Chain E, Carboxysome Shell Protein, Orfa From H. Neapolitanus
          Length = 91

 Score = 28.9 bits (63), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 240 WKMAGLPRQASVEHRGMVPGELIL 263
           W+  G PRQ +V+  G +PG+ +L
Sbjct: 28  WEKPGAPRQVAVDAIGCIPGDWVL 51


>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
           Plasmodium Falciparum
 pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
           Plasmodium Falciparum
 pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
           Plasmodium Falciparum
 pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
           Plasmodium Falciparum
          Length = 243

 Score = 28.1 bits (61), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 80  GVFMLLYLPIRRYVLKKDISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNE 129
           GVF   Y  +   VL   IS R ++     I +K+  P  +PF    TNE
Sbjct: 138 GVF---YFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNE 184


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,101,116
Number of Sequences: 62578
Number of extensions: 248996
Number of successful extensions: 777
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 776
Number of HSP's gapped (non-prelim): 5
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)