BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022908
         (290 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B4U7Y7|DCD_HYDS0 Deoxycytidine triphosphate deaminase OS=Hydrogenobaculum sp.
           (strain Y04AAS1) GN=dcd PE=3 SV=1
          Length = 177

 Score = 33.5 bits (75), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 17/134 (12%)

Query: 167 APVDELQVQGVDNPVLLRKISYFLQVIVTEAAKVIQNSSKNWKVNAF-TGEVESMSRMAS 225
           A  +EL +  + +P+  + +++    I+     ++ ++ +  K+  F T  VE  S +  
Sbjct: 41  AFYEELDIIDIKSPIQAKTVTFEEYFIINPGEFLLASTMEYIKLPEFITAFVEGRSSLGR 100

Query: 226 LTEGTAVLRSPSKSWKMAGLPRQASVE-----------HRGMVPGELILHKLDEVNKSVK 274
           L      L   +  W  AG   Q ++E           ++GM   +L+  KLDE+   V 
Sbjct: 101 LG-----LFIENAGWVDAGFEGQITLELYNANKYPIKLYKGMRICQLVFAKLDEIPSKVY 155

Query: 275 KIELLFEKSQNPQK 288
           + + L +K   P K
Sbjct: 156 RGKYLCQKGATPSK 169


>sp|A8G9G8|RF3_SERP5 Peptide chain release factor 3 OS=Serratia proteamaculans (strain
           568) GN=prfC PE=3 SV=1
          Length = 529

 Score = 32.3 bits (72), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 145 GCLQSIYGI-HTFRVESI--ARGKAAPVDELQ-VQGVDNPVLLRKISYFLQVIVTEAAKV 200
           GC +   G+ H ++ E+     GK   + E++ V+G+DNP L   +   L   + E  ++
Sbjct: 174 GCGKLFKGVYHLYKDETYLYQTGKGHTIQEVRIVKGLDNPELDAAVGEDLAAQLREELEL 233

Query: 201 IQNSSKNWKVNAF-TGEVESMSRMASLTE-GTAVLRSPSKSWKMAGLPRQASV 251
           +Q +S  +   AF +G++  +    +L   G   +     +W  A +PRQ+S 
Sbjct: 234 VQGASHEFDHEAFLSGDLTPVFFGTALGNFGVDHMLDGLVAWAPAPMPRQSST 286


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.133    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,711,396
Number of Sequences: 539616
Number of extensions: 3841917
Number of successful extensions: 15481
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 15478
Number of HSP's gapped (non-prelim): 8
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)