Query 022908
Match_columns 290
No_of_seqs 34 out of 36
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 13:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hth_B Vacuolar protein sortin 21.5 38 0.0013 27.6 1.7 44 96-147 35-78 (140)
2 3ha4_A MIX1; TPR-like, helix-t 15.2 71 0.0024 27.1 2.0 20 177-202 91-110 (154)
3 2kl8_A OR15; structural genomi 14.2 1.1E+02 0.0036 23.8 2.5 26 171-204 43-68 (85)
4 2kix_A BM2 protein; channel, t 14.2 1.4E+02 0.0048 19.8 2.8 16 67-82 13-28 (33)
5 2cay_A VPS36 PH domain, vacuol 12.1 70 0.0024 26.3 1.1 46 97-149 49-94 (145)
6 3p73_A MHC RFP-Y class I alpha 11.8 1.6E+02 0.0055 25.3 3.3 28 151-178 2-39 (275)
7 3kz5_E Protein SOPB; partition 10.8 1.1E+02 0.0036 22.3 1.5 12 273-284 37-48 (52)
8 1v54_D Cytochrome C oxidase su 10.3 72 0.0025 26.9 0.6 49 42-93 55-103 (147)
9 3ayf_A Nitric oxide reductase; 10.0 2.2E+02 0.0076 29.5 4.1 44 43-87 228-273 (800)
10 1s79_A Lupus LA protein; RRM, 9.9 88 0.003 23.0 0.8 18 90-107 1-18 (103)
No 1
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=21.52 E-value=38 Score=27.61 Aligned_cols=44 Identities=7% Similarity=0.139 Sum_probs=31.5
Q ss_pred hccccceeEeecCceEEeecCCccccccccccccccccCchhhhhhhhhchh
Q 022908 96 KDISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIEQGCL 147 (290)
Q Consensus 96 kdi~srkLyvT~~~IVYKvsRPs~~P~~Gv~~~Ek~vpL~~V~DiiieQG~L 147 (290)
..+.+-.||||.+-|+| +....- ..=-.+||..|.++=++|+-+
T Consensus 35 ~~~k~G~l~LTshRli~-~d~~~~-------~~s~~lpl~~v~~~e~~~~~f 78 (140)
T 2hth_B 35 IKFDAGTLLLSTHRLIW-RDQKNH-------ECCMAILLSQIVFIEEQAAGI 78 (140)
T ss_dssp SCCCCEEEEEESSEEEE-EETTCC-------SCCEEEEGGGEEEEEEECCTT
T ss_pred CCCcCCEEEEecCEEEE-ecCCCC-------ceEEEEEhHHeeeeeeecccc
Confidence 45688899999999998 322110 001268999999999999863
No 2
>3ha4_A MIX1; TPR-like, helix-turn-helix, unknown function; 2.40A {Leishmania major}
Probab=15.22 E-value=71 Score=27.10 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=17.6
Q ss_pred ecChhhhhhhchhhHHHHHHHHHhhh
Q 022908 177 VDNPVLLRKISYFLQVIVTEAAKVIQ 202 (290)
Q Consensus 177 V~~p~~fRk~~~~~~~vl~~~s~~~~ 202 (290)
|+||+.+|| -|++|+-++.-
T Consensus 91 vadpd~~rk------evlmqllnvky 110 (154)
T 3ha4_A 91 VADPDEMRK------EVLMQLLNVKY 110 (154)
T ss_dssp CSCHHHHHH------HHHHHHHHHHT
T ss_pred cCCHHHHHH------HHHHHHHhhhc
Confidence 799999999 99999987663
No 3
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=14.24 E-value=1.1e+02 Score=23.76 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=22.2
Q ss_pred ceeEeeecChhhhhhhchhhHHHHHHHHHhhhcc
Q 022908 171 ELQVQGVDNPVLLRKISYFLQVIVTEAAKVIQNS 204 (290)
Q Consensus 171 ~lqi~GV~~p~~fRk~~~~~~~vl~~~s~~~~~~ 204 (290)
+|.|+|| |...|| -.-.+++.+..++
T Consensus 43 eiritgv--peqvrk------elakeaerlakef 68 (85)
T 2kl8_A 43 EIRITGV--PEQVRK------ELAKEAERLAKEF 68 (85)
T ss_dssp EEEEESC--CHHHHH------HHHHHHHHHHHHT
T ss_pred EEEEecC--hHHHHH------HHHHHHHHHHHhc
Confidence 6888998 899999 8888888888776
No 4
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=14.24 E-value=1.4e+02 Score=19.76 Aligned_cols=16 Identities=38% Similarity=0.816 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 022908 67 FSISLLLVLAWGVGVF 82 (290)
Q Consensus 67 ~liSlLLvLAWGvGil 82 (290)
+..|.|-+.||-+|-|
T Consensus 13 filsalhf~awtighl 28 (33)
T 2kix_A 13 FILSALHFIAWTIGHL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4568889999999965
No 5
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=12.10 E-value=70 Score=26.31 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=33.0
Q ss_pred ccccceeEeecCceEEeecCCccccccccccccccccCchhhhhhhhhchhhh
Q 022908 97 DISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIEQGCLQS 149 (290)
Q Consensus 97 di~srkLyvT~~~IVYKvsRPs~~P~~Gv~~~Ek~vpL~~V~DiiieQG~Lqs 149 (290)
...+-.+|||++-|||-=..+--+-+ -.+||..|.|+=++|+-+-+
T Consensus 49 ~~k~G~lyLTshRIIyv~~~~~~~~S-------fslPL~~v~~~e~~~~~fg~ 94 (145)
T 2cay_A 49 QRQRGRIFLTSQRIIYIDDAKPTQNS-------LGLELDDLAYVNYSSGFLTR 94 (145)
T ss_dssp TCSSEEEEEESSEEEEEESSCHHHHC-------EEEEGGGEEEEEEECSSSSS
T ss_pred CCCccEEEEEcCeEEEecCCCCcceE-------EEeEhHheeeeeEEcCcccc
Confidence 46788999999999984332211111 16899999999999988543
No 6
>3p73_A MHC RFP-Y class I alpha chain; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, immune system; HET: 16A; 1.32A {Gallus gallus} PDB: 3p77_A*
Probab=11.77 E-value=1.6e+02 Score=25.34 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=22.9
Q ss_pred hceeEEEEeeeecCCCCC----------CCceeEeeec
Q 022908 151 YGIHTFRVESIARGKAAP----------VDELQVQGVD 178 (290)
Q Consensus 151 fGihs~riE~ig~~k~~~----------~D~lqi~GV~ 178 (290)
||-||||.--.+.++|+| +||+|+..-.
T Consensus 2 ~g~HSL~y~~T~~s~~~~~~p~f~~vg~vDd~qf~~yD 39 (275)
T 3p73_A 2 FGSHSLRYFLTGMTDPGPGMPRFVIVGYVDDKIFGTYN 39 (275)
T ss_dssp CCEEEEEEEEEEESCCCTTCCSEEEEEEETTEEEEEEE
T ss_pred CcccEEEEEEEEECCCCCCCCeEEEEEEECCeEEEEEE
Confidence 789999999999998865 6777777654
No 7
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=10.79 E-value=1.1e+02 Score=22.31 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=9.4
Q ss_pred HHHHHHHHhhcc
Q 022908 273 VKKIELLFEKSQ 284 (290)
Q Consensus 273 VKriE~Lle~~~ 284 (290)
+||||+||++-+
T Consensus 37 IeKIE~lL~e~~ 48 (52)
T 3kz5_E 37 IEKIEAILKELE 48 (52)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 688999998654
No 8
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=10.35 E-value=72 Score=26.94 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=27.6
Q ss_pred ccceehhhcHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 022908 42 SEEILYAASFEELASNSVKYDTIIWFSISLLLVLAWGVGVFMLLYLPIRRYV 93 (290)
Q Consensus 42 ~e~ILY~ASFeE~~~~~vkYdt~~W~liSlLLvLAWGvGilmLLylPirryv 93 (290)
|-+-||.+||.+.-... +.-|=.|-.+ +...++++|+-.++++=+|.|+
T Consensus 55 EKkAlYrisF~~t~ae~-~~p~gewK~v--~g~v~~~i~~s~~~f~~~r~~v 103 (147)
T 1v54_D 55 EKVELYRLKFKESFAEM-NRSTNEWKTV--VGAAMFFIGFTALLLIWEKHYV 103 (147)
T ss_dssp HHHHHHHHHCSSCHHHH-TCCCSHHHHH--HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccccc-cCCCCchhHH--HHHHHHHHHHHHHHHHHHHHHc
Confidence 45679999996554442 4555667532 3334555555444444445543
No 9
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=9.99 E-value=2.2e+02 Score=29.46 Aligned_cols=44 Identities=20% Similarity=0.561 Sum_probs=34.7
Q ss_pred cceehhhcH--HHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 022908 43 EEILYAASF--EELASNSVKYDTIIWFSISLLLVLAWGVGVFMLLYL 87 (290)
Q Consensus 43 e~ILY~ASF--eE~~~~~vkYdt~~W~liSlLLvLAWGvGilmLLyl 87 (290)
+..=|+..| |.+.+|--..+++.|-.+|+++.+| |+|+++..|-
T Consensus 228 ~~~sytnnwp~~p~~~n~pt~~~~~ws~~s~~~l~~-~~~~~~~~~~ 273 (800)
T 3ayf_A 228 DEITYTNNWPYYEDAGNTMSFSAVWWSGASVTILIL-FIGIILYVFY 273 (800)
T ss_dssp CSSBTTTTCSCBGGGTBCCCHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred CCCcccCCCCCCCCCCCCCCchhHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 335677664 7888999999999999999988776 7787776664
No 10
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=9.85 E-value=88 Score=23.04 Aligned_cols=18 Identities=33% Similarity=0.809 Sum_probs=15.3
Q ss_pred hhhhhhhccccceeEeec
Q 022908 90 RRYVLKKDISSRKLYVTP 107 (290)
Q Consensus 90 rryv~rkdi~srkLyvT~ 107 (290)
++|..+++..+|+|||..
T Consensus 1 g~~~~~~~~~~~~lfV~~ 18 (103)
T 1s79_A 1 GRWILKNDVKNRSVYIKG 18 (103)
T ss_dssp CCSCCSSCSGGGCEEEEC
T ss_pred CcccccccCCCCEEEEEC
Confidence 468889999999999963
Done!