Query 022908
Match_columns 290
No_of_seqs 34 out of 36
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 13:08:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022908.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022908hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74f1 f.23.25.1 (F:1-32) Pet 38.0 14 0.001 22.8 3.1 14 71-84 14-27 (32)
2 d1r31a1 d.58.20.1 (A:111-220) 15.3 39 0.0029 25.2 2.4 28 171-204 5-32 (110)
3 d1zzka1 d.51.1.1 (A:11-85) HnR 14.7 1.2E+02 0.0088 19.4 4.6 65 126-196 4-73 (75)
4 d1c16a2 d.19.1.1 (A:1-180) Cla 14.0 55 0.004 24.6 3.0 32 152-183 1-33 (164)
5 d2hthb1 b.55.1.12 (B:3-131) Va 14.0 25 0.0018 26.3 0.8 45 95-147 30-74 (129)
6 d1t7va2 d.19.1.1 (A:5-183) Zin 12.8 72 0.0052 23.9 3.3 32 152-183 2-34 (179)
7 d1we8a_ d.51.1.1 (A:) Tudor an 12.0 1.4E+02 0.011 20.4 4.6 71 128-201 17-91 (104)
8 d1v54d_ f.23.1.1 (D:) Mitochon 10.6 33 0.0024 27.0 0.6 49 42-93 52-100 (144)
9 d2ctka1 d.51.1.1 (A:8-98) Vigi 10.3 1.9E+02 0.014 19.3 4.7 68 126-200 10-81 (91)
10 d1mhca2 d.19.1.1 (A:1-181) Cla 10.1 95 0.0069 23.2 3.2 32 152-183 1-33 (181)
No 1
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=38.00 E-value=14 Score=22.85 Aligned_cols=14 Identities=43% Similarity=1.099 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHH
Q 022908 71 LLLVLAWGVGVFML 84 (290)
Q Consensus 71 lLLvLAWGvGilmL 84 (290)
-|.+..||+|.|+|
T Consensus 14 glifvgwglgalll 27 (32)
T d2e74f1 14 GLIFVGWGLGVLLL 27 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHh
Confidence 35677999999876
No 2
>d1r31a1 d.58.20.1 (A:111-220) NAD-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]}
Probab=15.34 E-value=39 Score=25.24 Aligned_cols=28 Identities=18% Similarity=0.472 Sum_probs=23.9
Q ss_pred ceeEeeecChhhhhhhchhhHHHHHHHHHhhhcc
Q 022908 171 ELQVQGVDNPVLLRKISYFLQVIVTEAAKVIQNS 204 (290)
Q Consensus 171 ~lqi~GV~~p~~fRk~~~~~~~vl~~~s~~~~~~ 204 (290)
.||+.+|.||...|+ .|+.+++++.+.-
T Consensus 5 QIql~~v~d~~~a~~------~i~~~k~~l~~~a 32 (110)
T d1r31a1 5 QVQIVGIQDPLNARL------SLLRRKDEIIELA 32 (110)
T ss_dssp EEEEESCSCHHHHHH------HHHHTHHHHHHHH
T ss_pred EEEEeeCCCHHHHHH------HHHHHHHHHHHHH
Confidence 489999999999999 8888888877544
No 3
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.70 E-value=1.2e+02 Score=19.37 Aligned_cols=65 Identities=17% Similarity=0.295 Sum_probs=41.7
Q ss_pred ccccccccCchhhhhhhhhc----hhhhhhceeEEEEeeeecCCCCCC-CceeEeeecChhhhhhhchhhHHHHHH
Q 022908 126 TTNERHVPLSLVIDVIIEQG----CLQSIYGIHTFRVESIARGKAAPV-DELQVQGVDNPVLLRKISYFLQVIVTE 196 (290)
Q Consensus 126 ~~~Ek~vpL~~V~DiiieQG----~Lqs~fGihs~riE~ig~~k~~~~-D~lqi~GV~~p~~fRk~~~~~~~vl~~ 196 (290)
++.+-.||-+.|-=||=.+| -||.-+|. +++|.. ..+..- .-++|.| +|....+....++..+.|
T Consensus 4 ~t~~i~VP~~~vg~iIG~~G~~I~~I~~~sga-~I~i~~---~~~~~~~r~i~I~G--~~~~v~~A~~~I~~~i~e 73 (75)
T d1zzka1 4 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGA-SIKIDE---PLEGSEDRIITITG--TQDQIQNAQYLLQNSVKQ 73 (75)
T ss_dssp EEEEEEEETTTGGGGTCGGGHHHHHHHHHHCC-EEEECC---TTSCSSEEEEEEEE--CHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHhcCeeECCCCchHHHHHhhcCC-eEEEcc---CCCCCCceEEEEEe--CHHHHHHHHHHHHHHHHh
Confidence 45677889888888888888 47777887 466643 222221 1388999 688777744444444443
No 4
>d1c16a2 d.19.1.1 (A:1-180) Class I MHC homolog {Mouse (Mus musculus), t22 [TaxId: 10090]}
Probab=14.04 E-value=55 Score=24.60 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=24.7
Q ss_pred ceeEEEEeeeecCCCCC-CCceeEeeecChhhh
Q 022908 152 GIHTFRVESIARGKAAP-VDELQVQGVDNPVLL 183 (290)
Q Consensus 152 Gihs~riE~ig~~k~~~-~D~lqi~GV~~p~~f 183 (290)
|-||||.=-.+.++|+| .-+..++|.+|...|
T Consensus 1 GsHSL~Y~~T~vs~p~~g~P~f~~vg~vDd~qf 33 (164)
T d1c16a2 1 GSHSLRYFYTAVSRPGLGEPWFIIVGYVDDMQV 33 (164)
T ss_dssp CCEEEEEEEEEECCSSSSCCEEEEEEEETTEEE
T ss_pred CCceEeEEEEEecCCCCCCcEEEEEEEECCEEE
Confidence 67999999999998876 446777887776554
No 5
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.00 E-value=25 Score=26.25 Aligned_cols=45 Identities=9% Similarity=0.147 Sum_probs=31.7
Q ss_pred hhccccceeEeecCceEEeecCCccccccccccccccccCchhhhhhhhhchh
Q 022908 95 KKDISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIEQGCL 147 (290)
Q Consensus 95 rkdi~srkLyvT~~~IVYKvsRPs~~P~~Gv~~~Ek~vpL~~V~DiiieQG~L 147 (290)
|..+.+=++|||.+-+||-=+.+.-- =-.+||..|.++=++|+-+
T Consensus 30 k~~~~~G~l~LTthRli~~~~~~~~~--------s~~lpl~~i~~~e~~~~~f 74 (129)
T d2hthb1 30 KIKFDAGTLLLSTHRLIWRDQKNHEC--------CMAILLSQIVFIEEQAAGI 74 (129)
T ss_dssp SSCCCCEEEEEESSEEEEEETTCCSC--------CEEEEGGGEEEEEEECCTT
T ss_pred cccccceEEEEEeceEEEecCCCCce--------EEEEEhHHceeeeEEcccc
Confidence 33467889999999999943333211 1258999999998888753
No 6
>d1t7va2 d.19.1.1 (A:5-183) Zinc-alpha-2-glycoprotein, ZAG {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.78 E-value=72 Score=23.87 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=25.1
Q ss_pred ceeEEEEeeeecCCCCC-CCceeEeeecChhhh
Q 022908 152 GIHTFRVESIARGKAAP-VDELQVQGVDNPVLL 183 (290)
Q Consensus 152 Gihs~riE~ig~~k~~~-~D~lqi~GV~~p~~f 183 (290)
|=||||.-..+.++|+| .-+..++|.+|-..|
T Consensus 2 GsHsL~y~~T~~s~~~~~~p~f~~vg~vDd~qf 34 (179)
T d1t7va2 2 GRYSLTYIYTGLSKHVEDVPAFQALGSLNDLQF 34 (179)
T ss_dssp CEEEEEEEEEEESSCCTTSCSEEEEEEETTEEE
T ss_pred CcceEEEEEEEecCCCCCCceEEEEEEECCEEE
Confidence 67999999999998877 446777777776555
No 7
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.00 E-value=1.4e+02 Score=20.43 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=49.3
Q ss_pred ccccccCchhhhhhhhhch----hhhhhceeEEEEeeeecCCCCCCCceeEeeecChhhhhhhchhhHHHHHHHHHhh
Q 022908 128 NERHVPLSLVIDVIIEQGC----LQSIYGIHTFRVESIARGKAAPVDELQVQGVDNPVLLRKISYFLQVIVTEAAKVI 201 (290)
Q Consensus 128 ~Ek~vpL~~V~DiiieQG~----Lqs~fGihs~riE~ig~~k~~~~D~lqi~GV~~p~~fRk~~~~~~~vl~~~s~~~ 201 (290)
.+-.||-..+-=||=.+|+ ||.-.|.+ +.|..........-+-+.|.| +|....+-+..++.++.+.....
T Consensus 17 ~~i~IP~~~vg~vIGk~G~~Ik~I~~~tga~-I~i~~~~~~~~~~~r~v~I~G--~~~~v~~A~~~I~~~i~e~~~~~ 91 (104)
T d1we8a_ 17 EQLSVPQRSVGRIIGRGGETIRSICKASGAK-ITCDKESEGTLLLSRLIKISG--TQKEVAAAKHLILEKVSEDEELR 91 (104)
T ss_dssp EEEEEETTTHHHHHTTTSHHHHHHHHHHCCE-EEECCSSCCSSSSEEEEEEEE--EHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhcceECCCCcchHHHHHHcCCE-EEECCCCCCCCCCccEEEEEe--CHHHHHHHHHHHHHHHhCcHHHH
Confidence 3567888888888888884 78888874 666544433222223489999 68888887888888887765444
No 8
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.61 E-value=33 Score=26.99 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=27.9
Q ss_pred ccceehhhcHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 022908 42 SEEILYAASFEELASNSVKYDTIIWFSISLLLVLAWGVGVFMLLYLPIRRYV 93 (290)
Q Consensus 42 ~e~ILY~ASFeE~~~~~vkYdt~~W~liSlLLvLAWGvGilmLLylPirryv 93 (290)
|-+-||.+||.+.-...-. .|-.|-.+- ...++|+|+-+++++=+|.|+
T Consensus 52 EKkalYrisF~~t~ae~~~-p~gewK~v~--g~~~~~i~~s~~i~~~~r~~v 100 (144)
T d1v54d_ 52 EKVELYRLKFKESFAEMNR-STNEWKTVV--GAAMFFIGFTALLLIWEKHYV 100 (144)
T ss_dssp HHHHHHHHHCSSCHHHHTC-CCSHHHHHH--HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccccccC-CCCchhHHH--HHHHHHHHHHHHHHHHHHHHc
Confidence 5678999999887666533 466675443 223444555333333344443
No 9
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.32 E-value=1.9e+02 Score=19.26 Aligned_cols=68 Identities=22% Similarity=0.205 Sum_probs=47.1
Q ss_pred ccccccccCchhhhhhhhhch----hhhhhceeEEEEeeeecCCCCCCCceeEeeecChhhhhhhchhhHHHHHHHHHh
Q 022908 126 TTNERHVPLSLVIDVIIEQGC----LQSIYGIHTFRVESIARGKAAPVDELQVQGVDNPVLLRKISYFLQVIVTEAAKV 200 (290)
Q Consensus 126 ~~~Ek~vpL~~V~DiiieQG~----Lqs~fGihs~riE~ig~~k~~~~D~lqi~GV~~p~~fRk~~~~~~~vl~~~s~~ 200 (290)
+..+-.||-..+--||=-+|+ |+.-+|. +++|.+.+ .+.+.+.|+| ++..-.+....++.++.+...-
T Consensus 10 vt~~i~Vp~~~~~~iIG~~G~~i~~I~~~tg~-~I~~p~~~----~~~~~v~I~G--~~~~V~~A~~~I~~~v~e~~~~ 81 (91)
T d2ctka1 10 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEV-NIHVPAPE----LQSDIIAITG--LAANLDRAKAGLLERVKELQAE 81 (91)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCC-EEECCCTT----TTCCEEEEEE--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECHHHHhHhcCCCchhHHHHHHHhCC-EEEECCCC----CCcceEEEEC--CHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888888888886 6667776 56664422 2456799999 6778888666666666665433
No 10
>d1mhca2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains {Mouse (Mus musculus), H-2M3 [TaxId: 10090]}
Probab=10.14 E-value=95 Score=23.25 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=23.4
Q ss_pred ceeEEEEeeeecCCCCCC-CceeEeeecChhhh
Q 022908 152 GIHTFRVESIARGKAAPV-DELQVQGVDNPVLL 183 (290)
Q Consensus 152 Gihs~riE~ig~~k~~~~-D~lqi~GV~~p~~f 183 (290)
|-|||+.-..+.++|+|. -+..++|.+|-..|
T Consensus 1 GsHSL~y~~T~~s~~~~g~P~f~~vg~vDd~~f 33 (181)
T d1mhca2 1 GSHSLRYFHTAVSRPGRGEPQYISVGYVDDVQF 33 (181)
T ss_dssp CCEEEEEEEEEESSCCTTSCSEEEEEEETTEEE
T ss_pred CCceeeEEEEEecCCCCCCCeEEEEEEECCeEE
Confidence 679999999998888763 45666676665544
Done!