BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022909
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 218 bits (555), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/179 (59%), Positives = 131/179 (73%)
Query: 75 GFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM 134
GFLG+GIMG PMA NL++AG DVTVWNR +KC PL++LGA+ SP EV A+CD+T AM
Sbjct: 5 GFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAM 64
Query: 135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGS 194
LADP +A +V G +G G+G G+GY+D+STVD +TS I + A G FLEAPVSG+
Sbjct: 65 LADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGT 124
Query: 195 KKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCT 253
KKPAEDG LI LAAGD+SL+ P +GK +LG+VG GA MKLVVNMIMG+ T
Sbjct: 125 KKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMT 183
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 217 bits (553), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 106/177 (59%), Positives = 131/177 (74%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+ GF+G+GIMG+ MA+NL+KAGC VT+WNR+ K + L +LGA+ +P EV SC VTF
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPVTF 62
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
AMLADP +A +V GKHG G+G G+GYVD+STVD TS+ I + A G FLEAPVS
Sbjct: 63 AMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVS 122
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
GSKKPAEDG LI LAAGD++LY+ P + MGK +LGDVG GA MKLVVNM+MG
Sbjct: 123 GSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMG 179
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 206 bits (524), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 104/177 (58%), Positives = 121/177 (68%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+GFLG+GIMG M+ NLLK G VTVWNRT SKCD L+ GA SP EV C T
Sbjct: 23 EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTI 82
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
AML+DP +A+ V K G + GKGY+D+STVD +TS IN I G F+E PVS
Sbjct: 83 AMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVS 142
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
GSKKPAEDGQLI LAAGDK+L+ P D++GK FYLG VGNGA MKL+VNMIMG
Sbjct: 143 GSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMG 199
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/177 (50%), Positives = 120/177 (67%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+IGFLG+G+MG+ + NLLK G VTVWNRT KCD I GA+ +P EV ++CD+TF
Sbjct: 32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
A ++DP++A D+ G G G+ PGK YVD+STVD DT + I + G FLEAPVS
Sbjct: 92 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 151
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
G+++ + DG L+ LAAGD+ LY + MGK+ F+LG+VGN A M L+VNM+ G
Sbjct: 152 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQG 208
>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
Reductase [salmonella Typhimurium Lt2]
Length = 299
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 96/189 (50%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
++GF+G+GI G P ++NLLKAG + V +R +I+ GA+ + +A CDV
Sbjct: 7 KVGFIGLGIXGKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 66
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
L + +VA G++G G PG +D S++ S+ I+ +KA G L+APVS
Sbjct: 67 TXLPNSPHVKEVALGENGIIEGAKPGTVLIDXSSIAPLASREISDALKAKGVEXLDAPVS 126
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSC 252
G + A DG L GDK++++ L S + GD+G G KL +I+ +
Sbjct: 127 GGEPKAIDGTLSVXVGGDKAIFDKYYDLXKAXAGSVVHTGDIGAGNVTKLANQVIVALNI 186
Query: 253 TFSYSFLTL 261
LTL
Sbjct: 187 AAXSEALTL 195
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 89/178 (50%)
Query: 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 133
+GF+G+G MG PMA+NL+K G + +++ C G + SP +VA D
Sbjct: 25 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 84
Query: 134 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193
ML +A++ G +G + G +D ST+D SK + ++ GA F++APVSG
Sbjct: 85 MLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSG 144
Query: 194 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS 251
A G L F+ G + + LL MG + Y G VG G A K+ NM++ S
Sbjct: 145 GVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAIS 202
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 89/178 (50%)
Query: 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 133
+GF+G+G MG PMA+NL+K G + +++ C G + SP +VA D
Sbjct: 3 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 62
Query: 134 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193
ML +A++ G +G + G +D ST+D SK + ++ GA F++APVSG
Sbjct: 63 MLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSG 122
Query: 194 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS 251
A G L F+ G + + LL MG + Y G VG G A K+ NM++ S
Sbjct: 123 GVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAIS 180
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 1/176 (0%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
++GF+G+GI G+P A NL +AG + V D L+SLGA + +V D+ F
Sbjct: 5 KLGFIGLGIXGSPXAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIF 63
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
+ D DV G+HG A GK VD S++ +K + GA +L+APVS
Sbjct: 64 IXVPDTPQVEDVLFGEHGCAKTSLQGKTIVDXSSISPIETKRFAQRVNEXGADYLDAPVS 123
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM 248
G + A +G L G++ +++ V PL DI+GK+ +G G+G K+ +I+
Sbjct: 124 GGEIGAREGTLSIXVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIV 179
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 98/177 (55%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+IGF+G+G MG PMA NLLK G V ++ ++ +++ GA+ + +VAA+ D+ F
Sbjct: 6 KIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIF 65
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
L + V G G S G VD+S+V ++ + G +++APVS
Sbjct: 66 TSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVS 125
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249
G K AE G L + ++++ + P+L ++GK +++GD G G A+K+V N+++G
Sbjct: 126 GGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLG 182
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 90/186 (48%), Gaps = 2/186 (1%)
Query: 64 SAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDE 123
+ E+D +I FLG G G P A+ L +AG + VWNRT ++ L +LGA
Sbjct: 24 TVESDPYARKITFLGTGSXGLPXARRLCEAGYALQVWNRTPARAASLAALGATIHEQARA 83
Query: 124 VAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG 183
A D+ + L + DV + G A+ PG ++D +++ ++ + A G
Sbjct: 84 AARDADIVVSXLENGAVVQDVLFAQ-GVAAAXKPGSLFLDXASITPREARDHAARLGALG 142
Query: 184 ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV 243
+ L+ PVSG AE G L+ A G + + PLL + G++ ++G G+G KL
Sbjct: 143 IAHLDTPVSGGTVGAEQGTLVIXAGGKPADFERSLPLLKVFGRAT-HVGPHGSGQLTKLA 201
Query: 244 VNMIMG 249
I+G
Sbjct: 202 NQXIVG 207
>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|B Chain B, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|C Chain C, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|D Chain D, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
Length = 297
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 2/161 (1%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+I FLG+G +GTP+A+ LL+AG ++ VWNRT SK +PL LGA + + + F
Sbjct: 7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVF 66
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
++LAD + ++ + +G +V ST+ +TS+ + + GA ++ AP+
Sbjct: 67 SVLADDAAVEELFSXE--LVEKLGKDGVHVSXSTISPETSRQLAQVHEWYGAHYVGAPIF 124
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD 233
+ +G+ + P+++ K F GD
Sbjct: 125 ARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVFDFGD 165
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS------PDEVAA 126
++ F+G+G MG PMA +L + VWNRT K ++Q P E A
Sbjct: 3 KVAFIGLGAMGYPMAGHLARR-FPTLVWNRTFEKA-------LRHQEEFGSEAVPLERVA 54
Query: 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 186
V F L +VA + + G +VD ++ + + S+ + ++ G ++
Sbjct: 55 EARVIFTCLPTTREVYEVAEALY---PYLREGTYWVDATSGEPEASRRLAERLREKGVTY 111
Query: 187 LEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM 246
L+APVSG AE G L + G + V P L K ++G VG G A+K + N
Sbjct: 112 LDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNA 170
Query: 247 IM 248
++
Sbjct: 171 LL 172
>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From
Pseudomonas Aeruginosa Pao1 In Complex With Nad
Length = 299
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+I F+G+G G P A NLLKAG + V++ +S D L++ GA S + DV
Sbjct: 4 QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 63
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
+ L + + G + + PG ++ ST+ +++ I+ + G + L+APVS
Sbjct: 64 SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVS 123
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM 248
G A G L F GD PL + G++ F+ G G G K+ N ++
Sbjct: 124 GGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLL 179
>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate
Dehydrogenase From Pseudomonas Aeruginosa Pao1
Length = 300
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+I F+G+G G P A NLLKAG + V++ +S D L++ GA S + DV
Sbjct: 5 QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 64
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
+ L + + G + + PG ++ ST+ +++ I+ + G + L+APVS
Sbjct: 65 SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVS 124
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM 248
G A G L F GD PL + G++ F+ G G G K+ N ++
Sbjct: 125 GGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQLL 180
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 18/182 (9%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS------PDEVAA 126
++ F+G+G G P A +L + VWNRT K ++Q P E A
Sbjct: 3 KVAFIGLGAXGYPXAGHLARR-FPTLVWNRTFEKA-------LRHQEEFGSEAVPLERVA 54
Query: 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 186
V F L +VA + + G +VD ++ + + S+ + ++ G ++
Sbjct: 55 EARVIFTCLPTTREVYEVAEALY---PYLREGTYWVDATSGEPEASRRLAERLREKGVTY 111
Query: 187 LEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM 246
L+APVSG AE G L G + V P L K ++G VG G A+K + N
Sbjct: 112 LDAPVSGGTSGAEAGTLTVXLGGPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNA 170
Query: 247 IM 248
++
Sbjct: 171 LL 172
>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
pdb|3QHA|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
Length = 296
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 4/175 (2%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
++G++G+G MG PMA + + VTV++ PL GA S +VAA+ +
Sbjct: 17 KLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHI 76
Query: 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192
+L D + +V G A PG ST+ T+ + +KA ++APVS
Sbjct: 77 TVLDDAQ-VREVVGELAGHAK---PGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVS 132
Query: 193 GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMI 247
G A G+L + D+ +Y + P + G+ G G MKL NM+
Sbjct: 133 GGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNML 187
>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase
(Ygbj) From Salmonella Typhimurium
Length = 303
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 2/165 (1%)
Query: 87 AQNLLKAGCDVTVWNRTKSKCDPLISLGA-KYQPSPDEVAASCDVTFAMLADPESAMDVA 145
A++ L+AG + C L++ GA S E A D ++ + V
Sbjct: 23 ARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVL 82
Query: 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF 205
G+ G A PG ST+ ++ I + A + L+APVSG A G+
Sbjct: 83 FGEDGVAHLXKPGSAVXVSSTISSADAQEIAAALTALNLNXLDAPVSGGAVKAAQGEXTV 142
Query: 206 LAAGDKSLYNTVAPLLDIMGKSRFYLGDV-GNGAAMKLVVNMIMG 249
A+G ++ + + P+LD + + + + D G G+ +K++ ++ G
Sbjct: 143 XASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAG 187
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 28/194 (14%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKYQP--SPDEVAASC 128
+IG +GM +MG +A N+ G V+V+NR++ K + +I+ G K P + E S
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKKLVPYYTVQEFVES- 75
Query: 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS--TVDG------DTSKLINGHIK 180
L P + + G S + K Y+D +DG DT + N +
Sbjct: 76 ------LETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRR-NRELS 128
Query: 181 ATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR-------FYLGD 233
A G +F+ VSG ++ G I + G K Y VAP+L + Y+G
Sbjct: 129 AEGFNFIGTGVSGGEEGTLKGPSI-MPGGQKEAYELVAPILKQIAAVAEDGEPCVTYIGA 187
Query: 234 VGNGAAMKLVVNMI 247
G G +K+V N I
Sbjct: 188 DGAGHYVKMVHNGI 201
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
pdb|3FWN|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
Length = 480
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 28/194 (14%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKYQP--SPDEVAASC 128
+IG +GM +MG +A N+ G V+++NR++ K + +I+ G K P + E S
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESL 76
Query: 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS--TVDG------DTSKLINGHIK 180
+ +L + G A + P Y+D +DG DT + N +
Sbjct: 77 ETPRRILL----MVKAGAGTDAAIDSLKP---YLDKGDIIIDGGNTFFQDTIRR-NRELS 128
Query: 181 ATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR-------FYLGD 233
A G +F+ VSG ++ A G I + G K Y VAP+L + Y+G
Sbjct: 129 AEGFNFIGTGVSGGEEGALKGPSI-MPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGA 187
Query: 234 VGNGAAMKLVVNMI 247
G G +K+V N I
Sbjct: 188 DGAGHYVKMVHNGI 201
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 28/194 (14%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKYQP--SPDEVAASC 128
+IG +GM +MG +A N+ G V+++NR++ K + +I+ G K P + E S
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESL 76
Query: 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS--TVDG------DTSKLINGHIK 180
+ +L + G A + P Y+D +DG DT + N +
Sbjct: 77 ETPRRILL----MVKAGAGTDAAIDSLKP---YLDKGDIIIDGGNTFFQDTIRR-NRELS 128
Query: 181 ATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR-------FYLGD 233
A G +F+ VSG ++ A G I + G K Y VAP+L + Y+G
Sbjct: 129 AEGFNFIGTGVSGGEEGALKGPSI-MPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGA 187
Query: 234 VGNGAAMKLVVNMI 247
G G +K+V N I
Sbjct: 188 DGAGHYVKMVHNGI 201
>pdb|3L6D|A Chain A, Crystal Structure Of Putative Oxidoreductase From
Pseudomonas Putida Kt2440
pdb|3L6D|B Chain B, Crystal Structure Of Putative Oxidoreductase From
Pseudomonas Putida Kt2440
Length = 306
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 2/158 (1%)
Query: 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 133
+ +G+G GT AQ LLK G V +WNR+ K L++ GA S ++ T
Sbjct: 12 VSVIGLGAXGTIXAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIF 71
Query: 134 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193
+L D + +V G G A + + VD +T D + G + G +++ +
Sbjct: 72 VLLDNHATHEV-LGXPGVARALAH-RTIVDYTTNAQDEGLALQGLVNQAGGHYVKGXIVA 129
Query: 194 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231
+ + + GD+ + LL+ + +L
Sbjct: 130 YPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVFL 167
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 75 GFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM 134
G +GM +MG +A N+ G V ++NRT SK + + ++Q + +
Sbjct: 7 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFK---EHQDKNLVFTKTLEEFVGS 63
Query: 135 LADPESAMDVACGKHGAASGMGPGKGYVDVST--VDG------DTSKLINGHIKATGASF 186
L P M + + + +D+ +DG DT + N + +G +F
Sbjct: 64 LEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRR-NAELADSGINF 122
Query: 187 LEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR--------FYLGDVGNGA 238
+ VSG +K A G + + G K Y+ VAP+ + + Y+G G G
Sbjct: 123 IGTGVSGGEKGALLGPSM-MPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGH 181
Query: 239 AMKLVVNMI 247
+K+V N I
Sbjct: 182 YVKMVHNGI 190
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 75 GFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM 134
G +GM +MG +A N+ G V ++NRT SK + + ++Q + +
Sbjct: 9 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFK---EHQDKNLVFTKTLEEFVGS 65
Query: 135 LADPESAMDVACGKHGAASGMGPGKGYVDVST--VDG------DTSKLINGHIKATGASF 186
L P M + + + +D+ +DG DT + N + +G +F
Sbjct: 66 LEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRR-NAELADSGINF 124
Query: 187 LEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR--------FYLGDVGNGA 238
+ VSG +K A G + + G K Y+ VAP+ + + Y+G G G
Sbjct: 125 IGTGVSGGEKGALLGPSM-MPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGH 183
Query: 239 AMKLVVNMI 247
+K+V N I
Sbjct: 184 YVKMVHNGI 192
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 75 GFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM 134
G +GM +MG +A N+ G V ++NRT SK + + ++Q + +
Sbjct: 8 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFK---EHQDKNLVFTKTLEEFVGS 64
Query: 135 LADPESAMDVACGKHGAASGMGPGKGYVDVST--VDG------DTSKLINGHIKATGASF 186
L P M + + + +D+ +DG DT + N + +G +F
Sbjct: 65 LEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRR-NAELADSGINF 123
Query: 187 LEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR--------FYLGDVGNGA 238
+ VSG +K A G + + G K Y+ VAP+ + + Y+G G G
Sbjct: 124 IGTGVSGGEKGALLGPSM-MPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGH 182
Query: 239 AMKLVVNMI 247
+K+V N I
Sbjct: 183 YVKMVHNGI 191
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 21/190 (11%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+IG +G+ +MG +A N+ G V V+NR + K D + + + + +
Sbjct: 7 QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQ-----EAKGKNIVGTYSIEE 61
Query: 133 AMLADPESAMDVACGKHGAASG-----MGPGKGYVDVSTVDGDT----SKLINGHIKATG 183
+ A + + K GA + + P D+ G+T ++ N + G
Sbjct: 62 FVNALEKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELG 121
Query: 184 ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS------RFYLGDVGNG 237
F+ VSG ++ A G I + G K + V P+ + + Y+G G G
Sbjct: 122 IHFIGTGVSGGEEGALKGPSI-MPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAG 180
Query: 238 AAMKLVVNMI 247
+K+V N I
Sbjct: 181 HYVKMVHNGI 190
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 21/190 (11%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
+IG +G+ +MG +A N+ G V V+NR + K D + + + + +
Sbjct: 6 QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQ-----EAKGKNIVGTYSIEE 60
Query: 133 AMLADPESAMDVACGKHGAASG-----MGPGKGYVDVSTVDGDT----SKLINGHIKATG 183
+ A + + K GA + + P D+ G+T ++ N + G
Sbjct: 61 FVNALEKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELG 120
Query: 184 ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS------RFYLGDVGNG 237
F+ VSG ++ A G I + G K + V P+ + + Y+G G G
Sbjct: 121 IHFIGTGVSGGEEGALKGPSI-MPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAG 179
Query: 238 AAMKLVVNMI 247
+K+V N I
Sbjct: 180 HYVKMVHNGI 189
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF 132
++G LGMG +G +A+ L+ G + W+R + K + L A+Y DE+ D+
Sbjct: 148 KVGILGMGAIGKAIARRLIPFGVKLYYWSRHR-KVNVEKELKARYM-DIDELLEKSDIVI 205
Query: 133 AML 135
L
Sbjct: 206 LAL 208
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 62 GVSAEADELPGR-IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS 120
G++ A +L G+ IG +G G +G + Q L GC++ +R + + GAK+
Sbjct: 160 GIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVED 219
Query: 121 PDEVAASCDV 130
+E+ CDV
Sbjct: 220 LNEMLPKCDV 229
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 62 GVSAEADELPGR-IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPS 120
G++ A +L G+ IG +G G +G + Q L GC++ +R + + GAK+
Sbjct: 154 GIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVED 213
Query: 121 PDEVAASCDV 130
+E+ CDV
Sbjct: 214 LNEMLPKCDV 223
>pdb|1I36|A Chain A, Structure Of Conserved Protein Mth1747 Of Unknown Function
Reveals Structural Similarity With 3-Hydroxyacid
Dehydrogenases
pdb|1I36|B Chain B, Structure Of Conserved Protein Mth1747 Of Unknown Function
Reveals Structural Similarity With 3-Hydroxyacid
Dehydrogenases
Length = 264
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDV--TVWNRTKSKCDPLISLGAKYQPSPDEVAASCDV 130
R+GF+G G + +A L G +V ++ R+ S + ++G + +E SC V
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGV--TETSEEDVYSCPV 59
Query: 131 TFAMLADPESAMDVA--CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188
+ + P A+ A G+H G+ YVD++ + +T ++ + I+ G F++
Sbjct: 60 VISAVT-PGVALGAARRAGRH--VRGI-----YVDINNISPETVRMASSLIEKGG--FVD 109
Query: 189 APVSGS-KKPAEDGQLI 204
A + GS ++ D ++I
Sbjct: 110 AAIMGSVRRKGADIRII 126
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 11/106 (10%)
Query: 56 FSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL----- 110
+ + A G D R+G +G G G + + ++ V+ RT + C PL
Sbjct: 170 WPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPM 229
Query: 111 -----ISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 151
SL +Y P+ E S D F DP DV+ + A
Sbjct: 230 SKEKMDSLRNRY-PTILEYVKSTDTAFPYHRDPRKGTDVSESERDA 274
>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
pdb|3K96|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
Length = 356
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA--KYQPS---PDEVAASC 128
I LG G GT +A L + G V +W+ D + + G +Y P+ P+ + A C
Sbjct: 32 IAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYC 91
Query: 129 DVTFAM 134
D+ ++
Sbjct: 92 DLKASL 97
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces
Cerevisiae
Length = 497
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 75 GFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK 116
G +G+ +MG + N G V +NRT+SK D ++ AK
Sbjct: 14 GLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAK 55
>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK7|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|E Chain E, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|F Chain F, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|G Chain G, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|H Chain H, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
Length = 269
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPDEVAASCD 129
I LG G + L+K G V +WNRTK K I L K+ SP+EV
Sbjct: 126 ILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKA---IKLAQKFPLEVVNSPEEVIDKVQ 182
Query: 130 V 130
V
Sbjct: 183 V 183
>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
Length = 275
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPDEVAASCD 129
I LG G + L+K G V +WNRTK K I L K+ SP+EV
Sbjct: 132 ILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKA---IKLAQKFPLEVVNSPEEVIDKVQ 188
Query: 130 V 130
V
Sbjct: 189 V 189
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNR-TKSKCDPLISLGAKYQPSPDEVAASCDV 130
RIG LG+G +G +A G V WNR T S D + SP ++A DV
Sbjct: 173 RIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVDWI------AHQSPVDLARDSDV 225
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate
Dehydrogenase Apo- Form
pdb|4GWK|A Chain A, Crystal Structure Of 6-Phosphogluconate Dehydrogenase
Complexed With 3-Phosphoglyceric Acid
Length = 484
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 64 SAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK 116
+A+AD I +G+ +MG + N+ G V +NRT SK D ++ AK
Sbjct: 2 NAQAD-----IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAK 49
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 65 AEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK 116
A+AD I +G+ +MG + N+ G V +NRT SK D ++ AK
Sbjct: 24 AQAD-----IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAK 70
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase Refined
At 2 Angstroms Resolution
Length = 482
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 65 AEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK 116
A+AD I +G+ +MG + N+ G V +NRT SK D ++ AK
Sbjct: 1 AQAD-----IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAK 47
>pdb|4A5O|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
Length = 286
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 81 IMGTPMAQNLLKAGCDVTVWNR 102
I+G PMA LL GC VTV +R
Sbjct: 172 IVGRPMALELLLGGCTVTVTHR 193
>pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
pdb|1PGJ|B Chain B, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
Length = 478
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 17/149 (11%)
Query: 86 MAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMD 143
+A N+ + G V V+NRT SK + + A P + A + + A L P A+
Sbjct: 16 LALNIAEKGFKVAVFNRTYSKSEEFMKANAS-APFAGNLKAFETMEAFAASLKKPRKALI 74
Query: 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK----------ATGASFLEAPVSG 193
+ S + K + + DT N H K A G FL +SG
Sbjct: 75 LVQAGAATDSTIEQLKKVFEKGDILVDTG---NAHFKDQGRRAQQLEAAGLRFLGMGISG 131
Query: 194 SKKPAEDGQLIFLAAGDKSLYNTVAPLLD 222
++ A G F G S++ + P+++
Sbjct: 132 GEEGARKGP-AFFPGGTLSVWEEIRPIVE 159
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWN 101
+PG++G +G G++G + + G +VTV
Sbjct: 179 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLE 210
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 133
+GFLGMG +G MA L G + R LG + Q + E+ AS D F
Sbjct: 148 VGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLR-QVACSELFASSD--FI 204
Query: 134 MLADPESA 141
+LA P +A
Sbjct: 205 LLALPLNA 212
>pdb|1B0A|A Chain A, 5,10, Methylene-Tetrahydropholate
DehydrogenaseCYCLOHYDROLASE FROM E COLI
Length = 288
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 81 IMGTPMAQNLLKAGCDVTVWNR 102
I+G PM+ LL AGC TV +R
Sbjct: 170 IVGRPMSMELLLAGCTTTVTHR 191
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA 133
+GFLGMG +G MA L G + R LG + Q + E+ AS D F
Sbjct: 148 VGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLR-QVACSELFASSD--FI 204
Query: 134 MLADPESA 141
+LA P +A
Sbjct: 205 LLALPLNA 212
>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
pdb|3TWO|B Chain B, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
Length = 348
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY 117
++G G G +G+ + + G +V+V+ R + K +S+G K+
Sbjct: 179 KVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKH 223
>pdb|4EZB|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
From Sinorhizobium Meliloti 1021
Length = 317
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPL 220
++D+++V DT L G I SF+E V P + ++ L AG +++ VA
Sbjct: 117 FIDLNSVGPDTKALAAGAIATGKGSFVEGAVXARVPPYAE-KVPILVAGRRAV--EVAER 173
Query: 221 LDIMGKSRFYLGDV-GNGAAMKLVVNMIM 248
L+ +G + +G+ G +++K + ++ +
Sbjct: 174 LNALGXNLEAVGETPGQASSLKXIRSVXI 202
>pdb|2G29|A Chain A, Crystal Structure Of The Periplasmic Nitrate-binding
Protein Nrta From Synechocystis Pcc 6803
Length = 417
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 10/50 (20%)
Query: 125 AASCDVTFAMLADPESAMDVACGKHG-------AASGMGPGKGYVDVSTV 167
AA FA + DP+ AM G H AA GM PGK D ST+
Sbjct: 143 AAPLKEAFAKVTDPKVAMTFPGGTHDMWIRYWLAAGGMEPGK---DFSTI 189
>pdb|1VL8|A Chain A, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441)
From Thermotoga Maritima At 2.07 A Resolution
pdb|1VL8|B Chain B, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441)
From Thermotoga Maritima At 2.07 A Resolution
Length = 267
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 66 EADELPGRIGFLGMGI--MGTPMAQNLLKAGCDVTVWNRT-KSKCDPLISLGAKYQPSPD 122
E +L GR+ + G +G +AQ L +AGC V V +R + + L KY +
Sbjct: 15 EVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY--GVE 72
Query: 123 EVAASCDVT 131
+A CDV+
Sbjct: 73 TMAFRCDVS 81
>pdb|3PJZ|A Chain A, Crystal Structure Of The Potassium Transporter Trkh From
Vibrio Parahaemolyticus
pdb|3PJZ|B Chain B, Crystal Structure Of The Potassium Transporter Trkh From
Vibrio Parahaemolyticus
Length = 494
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 224 MGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNL 283
+G+ + GDV + A L+V+M+ GR LE LI F +S + NL
Sbjct: 442 LGEVALHFGDVNDKAKWVLIVSMLFGR----------LEIFTLLILLTPTFWRSAAAENL 491
Query: 284 QYD 286
+
Sbjct: 492 YFQ 494
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,565,202
Number of Sequences: 62578
Number of extensions: 352269
Number of successful extensions: 988
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 934
Number of HSP's gapped (non-prelim): 62
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)