Query 022909
Match_columns 290
No_of_seqs 424 out of 3001
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 07:02:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2084 MmsB 3-hydroxyisobutyr 100.0 6.4E-38 1.4E-42 270.1 25.7 217 72-288 1-219 (286)
2 KOG0409 Predicted dehydrogenas 100.0 3E-34 6.5E-39 243.0 25.2 218 71-288 35-254 (327)
3 PRK15461 NADH-dependent gamma- 100.0 4.9E-33 1.1E-37 245.9 25.7 216 72-287 2-218 (296)
4 PRK15059 tartronate semialdehy 100.0 1.2E-32 2.5E-37 242.6 25.5 215 72-287 1-216 (292)
5 PRK11559 garR tartronate semia 100.0 7.2E-32 1.6E-36 238.9 25.0 217 71-287 2-219 (296)
6 TIGR01505 tartro_sem_red 2-hyd 100.0 1.3E-31 2.7E-36 236.8 24.8 215 73-287 1-216 (291)
7 TIGR01692 HIBADH 3-hydroxyisob 100.0 2E-31 4.3E-36 235.0 23.8 211 76-286 1-212 (288)
8 PRK12490 6-phosphogluconate de 100.0 4.6E-31 9.9E-36 233.8 22.8 211 72-286 1-221 (299)
9 COG1052 LdhA Lactate dehydroge 100.0 8.7E-33 1.9E-37 244.5 11.0 178 1-197 90-268 (324)
10 PLN02350 phosphogluconate dehy 100.0 1.3E-30 2.8E-35 241.9 24.8 211 71-285 6-237 (493)
11 PRK09599 6-phosphogluconate de 100.0 6.3E-30 1.4E-34 226.8 22.8 210 72-285 1-221 (301)
12 PLN02858 fructose-bisphosphate 100.0 6.4E-30 1.4E-34 262.0 24.8 218 71-288 4-225 (1378)
13 COG0111 SerA Phosphoglycerate 100.0 2.7E-31 5.9E-36 235.2 10.6 177 3-199 91-267 (324)
14 PTZ00142 6-phosphogluconate de 100.0 2.7E-29 5.8E-34 232.9 24.0 207 72-282 2-225 (470)
15 PLN02858 fructose-bisphosphate 100.0 3.9E-29 8.5E-34 256.2 25.7 219 70-288 323-545 (1378)
16 PRK08410 2-hydroxyacid dehydro 100.0 1.4E-30 3.1E-35 230.9 11.1 174 2-198 88-264 (311)
17 PRK15409 bifunctional glyoxyla 100.0 1.9E-30 4.1E-35 230.8 10.9 177 2-197 91-268 (323)
18 PLN03139 formate dehydrogenase 100.0 8E-30 1.7E-34 230.2 12.4 179 2-198 146-324 (386)
19 TIGR00872 gnd_rel 6-phosphoglu 100.0 4.8E-28 1E-32 214.3 22.5 210 72-286 1-220 (298)
20 TIGR00873 gnd 6-phosphoglucona 100.0 2.5E-28 5.4E-33 226.5 21.5 209 73-285 1-228 (467)
21 PRK07574 formate dehydrogenase 100.0 1.3E-29 2.8E-34 229.0 12.0 178 4-198 140-317 (385)
22 PRK06487 glycerate dehydrogena 100.0 1.4E-29 3.1E-34 225.1 12.1 172 2-197 91-265 (317)
23 PRK06932 glycerate dehydrogena 100.0 2E-29 4.3E-34 223.8 10.0 173 2-197 90-265 (314)
24 PLN02306 hydroxypyruvate reduc 100.0 6.8E-29 1.5E-33 224.9 10.7 179 2-197 111-304 (386)
25 PF03446 NAD_binding_2: NAD bi 100.0 1.7E-28 3.8E-33 198.5 11.9 161 72-233 2-163 (163)
26 PF02826 2-Hacid_dh_C: D-isome 100.0 2.9E-29 6.3E-34 205.8 6.3 160 21-198 1-160 (178)
27 PRK11790 D-3-phosphoglycerate 100.0 1.1E-28 2.3E-33 226.2 10.2 172 2-197 100-271 (409)
28 PRK13243 glyoxylate reductase; 100.0 2E-28 4.3E-33 219.2 10.5 177 2-197 92-272 (333)
29 PRK06436 glycerate dehydrogena 100.0 2.1E-28 4.7E-33 215.4 10.4 167 3-197 74-241 (303)
30 KOG0068 D-3-phosphoglycerate d 100.0 1.3E-28 2.7E-33 211.1 8.6 176 1-198 94-269 (406)
31 PRK15469 ghrA bifunctional gly 99.9 4.1E-28 8.9E-33 214.8 10.3 163 13-197 96-258 (312)
32 PLN02928 oxidoreductase family 99.9 5.4E-28 1.2E-32 217.2 10.1 174 3-197 108-294 (347)
33 PRK09287 6-phosphogluconate de 99.9 3.9E-26 8.3E-31 211.1 21.7 197 82-282 1-214 (459)
34 TIGR01327 PGDH D-3-phosphoglyc 99.9 1.1E-27 2.4E-32 226.3 10.3 174 3-197 88-261 (525)
35 PRK12480 D-lactate dehydrogena 99.9 1.7E-27 3.7E-32 212.6 9.9 172 2-196 94-265 (330)
36 PRK13581 D-3-phosphoglycerate 99.9 4.3E-27 9.2E-32 222.4 9.9 173 3-197 90-262 (526)
37 KOG0069 Glyoxylate/hydroxypyru 99.9 1.5E-26 3.2E-31 202.6 11.0 166 14-196 119-284 (336)
38 PRK08605 D-lactate dehydrogena 99.9 6.3E-26 1.4E-30 203.1 9.9 173 2-196 94-267 (332)
39 COG1023 Gnd Predicted 6-phosph 99.9 6.6E-24 1.4E-28 174.3 19.7 206 72-282 1-213 (300)
40 TIGR03026 NDP-sugDHase nucleot 99.9 2.3E-23 5E-28 192.4 21.0 205 72-279 1-247 (411)
41 PRK11064 wecC UDP-N-acetyl-D-m 99.9 5.6E-22 1.2E-26 182.7 22.1 206 71-279 3-251 (415)
42 PRK15438 erythronate-4-phospha 99.9 1.2E-23 2.5E-28 189.6 10.5 152 3-197 84-239 (378)
43 PRK15182 Vi polysaccharide bio 99.9 1.7E-21 3.6E-26 179.6 20.6 206 71-278 6-246 (425)
44 PRK00257 erythronate-4-phospha 99.9 5.3E-23 1.2E-27 185.9 10.4 153 2-197 83-239 (381)
45 PRK06129 3-hydroxyacyl-CoA deh 99.9 2.6E-21 5.5E-26 172.3 19.8 204 72-289 3-233 (308)
46 PRK07531 bifunctional 3-hydrox 99.9 1.8E-21 4E-26 183.3 18.8 203 71-289 4-231 (495)
47 PRK14618 NAD(P)H-dependent gly 99.9 5.2E-22 1.1E-26 178.3 12.5 210 71-288 4-255 (328)
48 PRK15057 UDP-glucose 6-dehydro 99.9 1E-20 2.2E-25 172.5 20.5 201 72-279 1-236 (388)
49 COG0362 Gnd 6-phosphogluconate 99.9 7.4E-21 1.6E-25 166.7 16.9 209 71-283 3-227 (473)
50 PLN02688 pyrroline-5-carboxyla 99.9 2E-20 4.4E-25 163.2 16.3 202 72-285 1-211 (266)
51 PRK00094 gpsA NAD(P)H-dependen 99.8 3.2E-20 6.9E-25 166.5 13.8 201 72-276 2-240 (325)
52 PRK07066 3-hydroxybutyryl-CoA 99.8 2E-19 4.3E-24 159.5 18.2 205 71-289 7-234 (321)
53 PRK12491 pyrroline-5-carboxyla 99.8 1.7E-19 3.6E-24 157.4 15.4 205 71-286 2-215 (272)
54 PRK12557 H(2)-dependent methyl 99.8 4.6E-18 1E-22 152.3 22.4 195 83-285 32-247 (342)
55 PRK08655 prephenate dehydrogen 99.8 4.5E-18 9.8E-23 157.7 21.8 200 72-279 1-206 (437)
56 COG0345 ProC Pyrroline-5-carbo 99.8 1.8E-18 3.8E-23 148.3 16.8 201 72-285 2-211 (266)
57 PRK09260 3-hydroxybutyryl-CoA 99.8 2.3E-18 4.9E-23 152.0 17.9 188 72-280 2-222 (288)
58 PRK08507 prephenate dehydrogen 99.8 9.8E-18 2.1E-22 147.0 21.4 196 72-280 1-211 (275)
59 PRK08268 3-hydroxy-acyl-CoA de 99.8 3.1E-18 6.6E-23 161.4 19.3 187 71-280 7-227 (507)
60 PRK07679 pyrroline-5-carboxyla 99.8 1.2E-18 2.6E-23 153.1 15.1 201 71-284 3-215 (279)
61 PRK06130 3-hydroxybutyryl-CoA 99.8 1.3E-17 2.9E-22 148.7 21.2 203 71-289 4-230 (311)
62 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.8 4.4E-18 9.6E-23 159.9 17.6 187 71-280 5-225 (503)
63 PRK14619 NAD(P)H-dependent gly 99.8 2.1E-18 4.6E-23 153.5 14.7 184 71-274 4-214 (308)
64 PLN02256 arogenate dehydrogena 99.8 2.5E-17 5.5E-22 145.5 20.8 210 71-286 36-258 (304)
65 PRK06476 pyrroline-5-carboxyla 99.8 6.5E-18 1.4E-22 146.8 15.6 198 72-285 1-203 (258)
66 PRK11199 tyrA bifunctional cho 99.8 2E-17 4.4E-22 150.6 19.5 179 71-273 98-279 (374)
67 KOG2653 6-phosphogluconate deh 99.8 9.7E-18 2.1E-22 145.1 15.5 208 71-282 6-230 (487)
68 PRK07417 arogenate dehydrogena 99.8 1.1E-17 2.3E-22 147.0 15.4 172 72-251 1-185 (279)
69 PRK11880 pyrroline-5-carboxyla 99.8 1.6E-17 3.5E-22 145.1 16.0 202 71-285 2-212 (267)
70 PLN02353 probable UDP-glucose 99.8 1.7E-16 3.6E-21 147.9 23.4 209 72-280 2-256 (473)
71 PLN02545 3-hydroxybutyryl-CoA 99.8 4E-17 8.6E-22 144.6 17.3 189 71-280 4-224 (295)
72 PRK07530 3-hydroxybutyryl-CoA 99.8 8.9E-17 1.9E-21 142.1 19.2 189 71-278 4-222 (292)
73 PRK08293 3-hydroxybutyryl-CoA 99.8 8.3E-17 1.8E-21 141.9 18.8 197 71-281 3-227 (287)
74 PRK06035 3-hydroxyacyl-CoA deh 99.8 3.8E-17 8.2E-22 144.4 16.4 192 72-281 4-227 (291)
75 COG0287 TyrA Prephenate dehydr 99.8 1.5E-16 3.3E-21 138.3 19.8 180 71-255 3-193 (279)
76 PRK07634 pyrroline-5-carboxyla 99.7 3.1E-17 6.7E-22 141.4 15.1 207 70-285 3-216 (245)
77 COG0677 WecC UDP-N-acetyl-D-ma 99.7 1.2E-16 2.6E-21 141.1 18.8 209 71-280 9-255 (436)
78 PRK06545 prephenate dehydrogen 99.7 1.2E-16 2.6E-21 145.0 19.4 203 72-285 1-220 (359)
79 PRK07819 3-hydroxybutyryl-CoA 99.7 9.3E-17 2E-21 141.2 17.7 193 72-280 6-227 (286)
80 COG1004 Ugd Predicted UDP-gluc 99.7 1.7E-16 3.8E-21 140.6 19.2 206 72-277 1-243 (414)
81 PRK07680 late competence prote 99.7 6.6E-17 1.4E-21 141.6 15.6 202 72-285 1-212 (273)
82 PLN02712 arogenate dehydrogena 99.7 2.4E-16 5.3E-21 152.5 20.9 203 71-286 369-591 (667)
83 COG0240 GpsA Glycerol-3-phosph 99.7 1.7E-16 3.7E-21 138.7 15.5 200 72-275 2-238 (329)
84 PRK07502 cyclohexadienyl dehyd 99.7 1.3E-15 2.9E-20 135.5 21.3 176 71-251 6-197 (307)
85 TIGR01724 hmd_rel H2-forming N 99.7 2.5E-14 5.4E-19 124.2 22.0 146 83-233 32-194 (341)
86 PLN02712 arogenate dehydrogena 99.7 5.5E-15 1.2E-19 143.2 20.0 173 71-249 52-236 (667)
87 PRK06928 pyrroline-5-carboxyla 99.7 9.9E-16 2.1E-20 134.3 13.6 203 72-286 2-216 (277)
88 PRK05808 3-hydroxybutyryl-CoA 99.7 9E-15 1.9E-19 128.7 19.6 193 72-279 4-222 (282)
89 PRK14806 bifunctional cyclohex 99.7 1E-14 2.2E-19 144.4 20.4 205 71-283 3-223 (735)
90 PRK08229 2-dehydropantoate 2-r 99.6 1.7E-15 3.7E-20 136.9 13.3 188 71-270 2-235 (341)
91 PRK05479 ketol-acid reductoiso 99.6 1.4E-14 3.1E-19 128.3 18.7 192 71-272 17-225 (330)
92 PTZ00431 pyrroline carboxylate 99.6 6.7E-15 1.5E-19 127.9 15.6 197 71-285 3-207 (260)
93 TIGR00465 ilvC ketol-acid redu 99.6 4.7E-15 1E-19 131.4 14.1 203 71-285 3-224 (314)
94 PRK08818 prephenate dehydrogen 99.6 4.4E-14 9.5E-19 127.5 20.0 162 71-251 4-173 (370)
95 COG2085 Predicted dinucleotide 99.6 1.2E-14 2.5E-19 119.2 13.6 167 72-243 2-190 (211)
96 COG1250 FadB 3-hydroxyacyl-CoA 99.6 2.3E-14 4.9E-19 125.4 15.7 196 71-282 3-225 (307)
97 PTZ00345 glycerol-3-phosphate 99.6 2.3E-14 4.9E-19 129.3 15.2 199 71-274 11-264 (365)
98 PRK08269 3-hydroxybutyryl-CoA 99.6 2.7E-14 5.8E-19 127.1 15.1 191 82-289 1-229 (314)
99 PRK12439 NAD(P)H-dependent gly 99.6 1.9E-14 4.2E-19 129.7 14.1 199 71-274 7-243 (341)
100 TIGR03376 glycerol3P_DH glycer 99.6 3.6E-14 7.8E-19 127.2 13.7 196 73-273 1-254 (342)
101 TIGR01915 npdG NADPH-dependent 99.6 7.3E-14 1.6E-18 118.4 13.9 167 72-245 1-201 (219)
102 PRK14620 NAD(P)H-dependent gly 99.6 1.7E-13 3.7E-18 123.1 16.7 197 72-272 1-238 (326)
103 PRK11730 fadB multifunctional 99.6 1.2E-13 2.5E-18 135.5 16.3 193 71-280 313-532 (715)
104 PRK13403 ketol-acid reductoiso 99.5 5.4E-13 1.2E-17 116.8 17.3 193 71-272 16-223 (335)
105 PTZ00075 Adenosylhomocysteinas 99.5 4.3E-14 9.3E-19 130.0 10.4 138 3-182 218-355 (476)
106 PF02737 3HCDH_N: 3-hydroxyacy 99.5 5.5E-14 1.2E-18 115.3 9.7 152 73-233 1-179 (180)
107 TIGR02437 FadB fatty oxidation 99.5 2.3E-13 4.9E-18 133.3 15.6 193 71-280 313-532 (714)
108 PF02153 PDH: Prephenate dehyd 99.5 6.8E-13 1.5E-17 115.1 14.1 166 86-256 1-181 (258)
109 PRK11154 fadJ multifunctional 99.5 7E-13 1.5E-17 130.1 15.6 189 71-276 309-525 (708)
110 TIGR02440 FadJ fatty oxidation 99.5 1.5E-12 3.2E-17 127.6 16.4 189 71-276 304-520 (699)
111 TIGR02441 fa_ox_alpha_mit fatt 99.5 8.2E-13 1.8E-17 129.7 14.6 189 71-276 335-550 (737)
112 PRK12921 2-dehydropantoate 2-r 99.5 2.5E-12 5.5E-17 114.3 16.5 199 72-276 1-244 (305)
113 PF03807 F420_oxidored: NADP o 99.4 3.5E-13 7.6E-18 99.1 6.9 90 73-167 1-96 (96)
114 TIGR02853 spore_dpaA dipicolin 99.4 6.4E-13 1.4E-17 116.7 9.7 110 71-190 151-262 (287)
115 PF01210 NAD_Gly3P_dh_N: NAD-d 99.4 3.6E-13 7.9E-18 108.1 7.1 136 73-212 1-155 (157)
116 PF03721 UDPG_MGDP_dh_N: UDP-g 99.4 1.1E-12 2.3E-17 108.0 9.9 148 72-219 1-184 (185)
117 PF10727 Rossmann-like: Rossma 99.4 2.5E-13 5.5E-18 104.3 5.3 111 71-188 10-124 (127)
118 PRK06522 2-dehydropantoate 2-r 99.4 1.6E-11 3.5E-16 109.0 16.5 201 72-278 1-243 (304)
119 KOG2304 3-hydroxyacyl-CoA dehy 99.3 3.2E-12 6.9E-17 104.9 8.4 190 71-278 11-235 (298)
120 TIGR00112 proC pyrroline-5-car 99.3 1.2E-11 2.5E-16 106.6 11.7 181 95-286 10-195 (245)
121 KOG2380 Prephenate dehydrogena 99.3 1.4E-10 3.1E-15 100.6 17.6 162 71-237 52-224 (480)
122 PLN02494 adenosylhomocysteinas 99.3 1.1E-11 2.4E-16 113.9 8.6 105 71-182 254-361 (477)
123 TIGR00936 ahcY adenosylhomocys 99.3 3.4E-11 7.3E-16 109.8 11.3 104 71-181 195-299 (406)
124 PRK06444 prephenate dehydrogen 99.3 1.8E-10 3.9E-15 95.4 14.5 166 72-285 1-171 (197)
125 PRK06249 2-dehydropantoate 2-r 99.3 3.7E-10 7.9E-15 100.9 17.6 189 71-267 5-242 (313)
126 PRK13302 putative L-aspartate 99.2 1.3E-10 2.8E-15 101.5 11.3 109 71-186 6-119 (271)
127 cd01065 NAD_bind_Shikimate_DH 99.2 3.8E-11 8.2E-16 96.0 7.2 112 71-188 19-137 (155)
128 PF07991 IlvN: Acetohydroxy ac 99.1 1.8E-10 3.9E-15 90.9 7.9 89 71-163 4-93 (165)
129 PRK05708 2-dehydropantoate 2-r 99.1 2.2E-09 4.7E-14 95.5 15.1 192 71-267 2-229 (305)
130 COG1893 ApbA Ketopantoate redu 99.1 5.3E-09 1.2E-13 92.8 17.1 207 72-284 1-256 (307)
131 KOG3124 Pyrroline-5-carboxylat 99.1 1.2E-09 2.7E-14 91.7 12.2 202 72-284 1-211 (267)
132 KOG0067 Transcription factor C 99.1 4.1E-11 9E-16 104.9 3.6 165 7-186 125-290 (435)
133 PF00670 AdoHcyase_NAD: S-aden 99.1 1.7E-10 3.6E-15 91.6 6.4 93 71-170 23-115 (162)
134 PRK08306 dipicolinate synthase 99.1 3.4E-10 7.4E-15 100.1 9.0 110 71-190 152-263 (296)
135 PRK05476 S-adenosyl-L-homocyst 99.1 5.5E-10 1.2E-14 102.5 10.4 100 71-177 212-312 (425)
136 PRK05225 ketol-acid reductoiso 99.1 1.9E-09 4.1E-14 98.2 13.0 195 71-275 36-253 (487)
137 COG4007 Predicted dehydrogenas 99.1 3.1E-08 6.8E-13 83.1 18.5 156 72-232 2-194 (340)
138 KOG2305 3-hydroxyacyl-CoA dehy 99.0 2.5E-09 5.4E-14 88.2 10.2 205 71-289 3-235 (313)
139 cd00401 AdoHcyase S-adenosyl-L 99.0 3.1E-09 6.8E-14 97.3 10.6 91 71-168 202-292 (413)
140 cd01075 NAD_bind_Leu_Phe_Val_D 99.0 1E-08 2.2E-13 85.5 11.9 108 71-188 28-137 (200)
141 KOG2666 UDP-glucose/GDP-mannos 98.9 4.4E-08 9.6E-13 84.6 14.8 205 72-276 2-252 (481)
142 PRK13304 L-aspartate dehydroge 98.9 9.4E-09 2E-13 89.6 10.6 108 72-186 2-116 (265)
143 PRK06141 ornithine cyclodeamin 98.8 1.1E-08 2.3E-13 91.4 7.2 109 71-188 125-241 (314)
144 KOG2711 Glycerol-3-phosphate d 98.7 1.5E-07 3.4E-12 82.2 12.2 158 71-233 21-216 (372)
145 PRK14194 bifunctional 5,10-met 98.7 4.3E-08 9.4E-13 85.8 8.8 73 71-166 159-232 (301)
146 PF01408 GFO_IDH_MocA: Oxidore 98.7 2.5E-07 5.4E-12 70.5 10.3 108 72-186 1-116 (120)
147 PF01488 Shikimate_DH: Shikima 98.7 2.3E-08 5.1E-13 78.1 4.2 91 71-166 12-110 (135)
148 COG1712 Predicted dinucleotide 98.6 2.3E-07 5E-12 76.7 9.7 94 72-172 1-98 (255)
149 TIGR00518 alaDH alanine dehydr 98.6 4.9E-08 1.1E-12 89.0 6.3 94 71-166 167-268 (370)
150 COG0059 IlvC Ketol-acid reduct 98.6 1.8E-07 4E-12 80.5 8.5 148 71-226 18-175 (338)
151 PRK14188 bifunctional 5,10-met 98.6 2.4E-07 5.3E-12 81.3 8.8 72 71-166 158-231 (296)
152 TIGR00507 aroE shikimate 5-deh 98.6 2E-07 4.3E-12 81.6 8.3 112 71-188 117-235 (270)
153 TIGR02371 ala_DH_arch alanine 98.6 1.5E-07 3.3E-12 84.4 7.4 91 71-169 128-226 (325)
154 PRK13301 putative L-aspartate 98.6 5.1E-07 1.1E-11 77.4 9.9 107 71-185 2-116 (267)
155 COG5495 Uncharacterized conser 98.5 4E-06 8.7E-11 69.5 14.4 188 71-268 10-205 (289)
156 COG1748 LYS9 Saccharopine dehy 98.5 4.7E-07 1E-11 82.0 9.7 107 72-186 2-119 (389)
157 cd05213 NAD_bind_Glutamyl_tRNA 98.5 2.9E-07 6.2E-12 82.2 7.2 92 71-166 178-274 (311)
158 PRK07340 ornithine cyclodeamin 98.5 6.3E-07 1.4E-11 79.7 9.1 91 71-170 125-222 (304)
159 PF01113 DapB_N: Dihydrodipico 98.5 7E-07 1.5E-11 68.7 8.0 113 72-192 1-124 (124)
160 COG2423 Predicted ornithine cy 98.4 1.1E-06 2.4E-11 78.3 8.9 111 71-190 130-250 (330)
161 PRK00258 aroE shikimate 5-dehy 98.4 9.2E-07 2E-11 77.7 8.2 114 71-188 123-242 (278)
162 TIGR00745 apbA_panE 2-dehydrop 98.4 6.4E-06 1.4E-10 72.6 13.6 190 82-278 2-236 (293)
163 PRK08618 ornithine cyclodeamin 98.4 1.1E-06 2.4E-11 78.9 8.4 90 71-169 127-225 (325)
164 PRK00048 dihydrodipicolinate r 98.4 2.7E-06 5.7E-11 73.9 10.4 112 72-192 2-117 (257)
165 PRK14179 bifunctional 5,10-met 98.4 1.2E-06 2.7E-11 76.2 8.1 74 71-167 158-232 (284)
166 PRK06823 ornithine cyclodeamin 98.4 1E-06 2.2E-11 78.6 7.8 91 71-169 128-226 (315)
167 PF02558 ApbA: Ketopantoate re 98.4 7.6E-07 1.7E-11 70.7 6.2 101 74-180 1-115 (151)
168 PRK13303 L-aspartate dehydroge 98.4 3.7E-06 8.1E-11 73.3 10.4 106 72-185 2-115 (265)
169 PRK06407 ornithine cyclodeamin 98.4 1.1E-06 2.5E-11 77.8 7.2 109 71-188 117-235 (301)
170 TIGR01921 DAP-DH diaminopimela 98.3 5.4E-06 1.2E-10 73.6 11.2 109 71-188 3-118 (324)
171 PRK06046 alanine dehydrogenase 98.3 1.7E-06 3.7E-11 77.7 7.0 90 71-169 129-227 (326)
172 cd01080 NAD_bind_m-THF_DH_Cycl 98.3 3.3E-06 7.1E-11 68.3 8.0 75 71-168 44-119 (168)
173 PLN00203 glutamyl-tRNA reducta 98.3 1.2E-06 2.6E-11 82.9 6.0 69 71-139 266-341 (519)
174 TIGR02992 ectoine_eutC ectoine 98.3 2.3E-06 4.9E-11 76.9 7.2 89 71-167 129-226 (326)
175 TIGR01723 hmd_TIGR 5,10-methen 98.3 6.6E-05 1.4E-09 64.1 15.4 113 114-232 126-240 (340)
176 PRK00961 H(2)-dependent methyl 98.2 6.7E-05 1.4E-09 64.0 15.1 114 114-233 128-243 (342)
177 PRK12549 shikimate 5-dehydroge 98.2 4.1E-06 9E-11 73.7 8.3 111 71-188 127-248 (284)
178 COG0673 MviM Predicted dehydro 98.2 1.1E-05 2.5E-10 72.6 11.4 109 71-186 3-121 (342)
179 PF02423 OCD_Mu_crystall: Orni 98.2 2E-06 4.2E-11 76.8 5.7 93 71-169 128-228 (313)
180 PRK08291 ectoine utilization p 98.2 3.8E-06 8.3E-11 75.6 7.7 87 71-165 132-227 (330)
181 COG0499 SAM1 S-adenosylhomocys 98.2 3E-06 6.6E-11 74.7 6.7 93 71-170 209-301 (420)
182 PRK09310 aroDE bifunctional 3- 98.2 7.1E-06 1.5E-10 77.4 9.5 103 71-188 332-437 (477)
183 TIGR01761 thiaz-red thiazoliny 98.2 2E-05 4.4E-10 70.9 12.0 110 71-187 3-119 (343)
184 PF01262 AlaDh_PNT_C: Alanine 98.2 2.8E-06 6.1E-11 68.9 5.7 93 71-165 20-139 (168)
185 TIGR01035 hemA glutamyl-tRNA r 98.2 1.7E-06 3.6E-11 80.3 4.7 69 71-139 180-252 (417)
186 PRK14189 bifunctional 5,10-met 98.2 6.9E-06 1.5E-10 71.6 8.2 74 71-167 158-232 (285)
187 TIGR01763 MalateDH_bact malate 98.2 1.3E-05 2.8E-10 71.3 10.0 65 72-137 2-79 (305)
188 PRK11579 putative oxidoreducta 98.2 2.6E-05 5.6E-10 70.7 12.0 107 71-186 4-118 (346)
189 PTZ00117 malate dehydrogenase; 98.2 1.5E-05 3.4E-10 71.3 10.0 64 71-135 5-81 (319)
190 TIGR00036 dapB dihydrodipicoli 98.1 3.1E-05 6.8E-10 67.5 11.6 114 72-192 2-127 (266)
191 PRK07589 ornithine cyclodeamin 98.1 5.9E-06 1.3E-10 74.5 7.3 93 71-169 129-229 (346)
192 PRK06199 ornithine cyclodeamin 98.1 4.5E-06 9.9E-11 76.2 6.5 91 71-166 155-260 (379)
193 PRK00045 hemA glutamyl-tRNA re 98.1 2.5E-06 5.5E-11 79.3 4.9 69 71-139 182-254 (423)
194 cd01078 NAD_bind_H4MPT_DH NADP 98.1 5.4E-06 1.2E-10 68.8 6.4 95 71-171 28-135 (194)
195 PRK06223 malate dehydrogenase; 98.1 1.7E-05 3.7E-10 70.7 9.9 65 71-136 2-79 (307)
196 PTZ00082 L-lactate dehydrogena 98.1 1.3E-05 2.8E-10 71.8 8.9 66 69-135 4-82 (321)
197 TIGR00561 pntA NAD(P) transhyd 98.1 1.2E-05 2.6E-10 75.6 9.0 93 71-165 164-284 (511)
198 PRK14175 bifunctional 5,10-met 98.1 1.2E-05 2.6E-10 70.2 8.3 73 71-166 158-231 (286)
199 PRK05472 redox-sensing transcr 98.1 4.3E-06 9.3E-11 70.5 5.0 109 71-181 84-201 (213)
200 smart00859 Semialdhyde_dh Semi 98.1 1.4E-05 3E-10 61.2 7.2 91 73-167 1-101 (122)
201 PRK08300 acetaldehyde dehydrog 98.1 2.7E-05 5.8E-10 68.5 9.6 91 71-168 4-104 (302)
202 PF01118 Semialdhyde_dh: Semia 98.1 8.4E-06 1.8E-10 62.4 5.7 89 73-168 1-100 (121)
203 KOG1370 S-adenosylhomocysteine 98.1 9.4E-06 2E-10 70.1 6.4 93 71-170 214-306 (434)
204 cd05191 NAD_bind_amino_acid_DH 98.1 2.3E-05 5E-10 56.1 7.5 63 71-165 23-86 (86)
205 PLN02819 lysine-ketoglutarate 98.0 3E-05 6.5E-10 78.6 10.8 110 71-188 569-701 (1042)
206 COG0373 HemA Glutamyl-tRNA red 98.0 1.5E-05 3.3E-10 72.7 7.6 68 71-138 178-249 (414)
207 cd05291 HicDH_like L-2-hydroxy 98.0 3.4E-05 7.4E-10 68.7 9.8 66 72-138 1-79 (306)
208 PRK06349 homoserine dehydrogen 98.0 2.3E-05 5.1E-10 72.9 8.8 111 71-187 3-127 (426)
209 PRK09424 pntA NAD(P) transhydr 98.0 1.2E-05 2.6E-10 75.8 6.3 94 71-166 165-286 (509)
210 PRK11861 bifunctional prephena 98.0 9.1E-05 2E-09 73.0 12.2 123 131-257 1-135 (673)
211 PF02882 THF_DHG_CYH_C: Tetrah 98.0 3.8E-05 8.2E-10 61.4 7.8 76 71-169 36-112 (160)
212 cd05212 NAD_bind_m-THF_DH_Cycl 98.0 6.4E-05 1.4E-09 58.8 8.9 75 71-168 28-103 (140)
213 cd05311 NAD_bind_2_malic_enz N 97.9 5.1E-05 1.1E-09 64.5 8.7 108 71-188 25-149 (226)
214 PF03435 Saccharop_dh: Sacchar 97.9 2.1E-05 4.5E-10 72.4 6.8 107 74-188 1-120 (386)
215 PRK08374 homoserine dehydrogen 97.9 0.00011 2.5E-09 66.1 11.3 169 71-267 2-206 (336)
216 PRK13940 glutamyl-tRNA reducta 97.9 1.7E-05 3.7E-10 73.3 6.0 70 71-140 181-255 (414)
217 cd01076 NAD_bind_1_Glu_DH NAD( 97.9 7.1E-05 1.5E-09 63.6 9.4 107 71-188 31-157 (227)
218 cd05211 NAD_bind_Glu_Leu_Phe_V 97.9 8.9E-05 1.9E-09 62.6 9.7 108 71-188 23-148 (217)
219 PF14833 NAD_binding_11: NAD-b 97.9 1.6E-05 3.5E-10 60.8 4.8 54 235-288 1-55 (122)
220 cd05297 GH4_alpha_glucosidase_ 97.9 3E-05 6.5E-10 72.1 7.4 66 72-137 1-84 (423)
221 PRK14192 bifunctional 5,10-met 97.9 5.1E-05 1.1E-09 66.6 8.4 74 71-167 159-233 (283)
222 cd01339 LDH-like_MDH L-lactate 97.9 5.4E-05 1.2E-09 67.3 8.6 62 74-136 1-75 (300)
223 PRK10792 bifunctional 5,10-met 97.9 6E-05 1.3E-09 65.7 8.6 73 71-166 159-232 (285)
224 PF00056 Ldh_1_N: lactate/mala 97.9 1.9E-05 4E-10 62.1 4.7 65 72-136 1-78 (141)
225 PF03447 NAD_binding_3: Homose 97.9 4E-05 8.7E-10 58.1 6.4 103 78-187 1-115 (117)
226 PRK10206 putative oxidoreducta 97.9 0.00013 2.8E-09 66.1 10.5 108 72-186 2-118 (344)
227 cd00650 LDH_MDH_like NAD-depen 97.8 6.2E-05 1.3E-09 65.6 7.9 93 74-166 1-120 (263)
228 TIGR01809 Shik-DH-AROM shikima 97.8 9E-05 1.9E-09 65.2 8.9 116 71-188 125-252 (282)
229 PF13380 CoA_binding_2: CoA bi 97.8 6.3E-05 1.4E-09 57.0 6.8 103 72-188 1-107 (116)
230 PRK00066 ldh L-lactate dehydro 97.8 0.00013 2.7E-09 65.3 9.7 66 71-137 6-83 (315)
231 PRK00683 murD UDP-N-acetylmura 97.8 0.00034 7.3E-09 65.1 12.9 68 71-138 3-70 (418)
232 TIGR02354 thiF_fam2 thiamine b 97.8 7E-05 1.5E-09 62.4 7.2 33 71-103 21-54 (200)
233 COG0686 Ald Alanine dehydrogen 97.8 1.8E-05 3.9E-10 68.7 3.7 93 71-165 168-268 (371)
234 TIGR03215 ac_ald_DH_ac acetald 97.8 0.00012 2.5E-09 64.2 8.8 90 72-168 2-98 (285)
235 PRK04207 glyceraldehyde-3-phos 97.8 8.2E-05 1.8E-09 67.2 8.0 67 72-138 2-89 (341)
236 PRK14191 bifunctional 5,10-met 97.8 0.0001 2.2E-09 64.3 8.2 73 71-166 157-230 (285)
237 PRK14176 bifunctional 5,10-met 97.8 0.00011 2.4E-09 64.1 8.3 73 71-166 164-237 (287)
238 cd01079 NAD_bind_m-THF_DH NAD 97.8 0.00011 2.4E-09 60.2 7.8 87 71-167 62-158 (197)
239 PRK10669 putative cation:proto 97.8 0.00022 4.8E-09 68.9 11.3 75 71-145 417-499 (558)
240 PRK00436 argC N-acetyl-gamma-g 97.8 9.6E-05 2.1E-09 66.9 8.2 92 71-170 2-104 (343)
241 KOG2741 Dimeric dihydrodiol de 97.8 0.00033 7.1E-09 62.0 11.1 113 71-189 6-129 (351)
242 COG0569 TrkA K+ transport syst 97.8 5E-05 1.1E-09 64.5 6.0 67 72-138 1-77 (225)
243 PRK12548 shikimate 5-dehydroge 97.8 0.00016 3.5E-09 63.8 9.4 113 71-188 126-257 (289)
244 cd05293 LDH_1 A subgroup of L- 97.7 0.00021 4.5E-09 63.7 9.8 95 71-166 3-121 (312)
245 PF02254 TrkA_N: TrkA-N domain 97.7 0.00034 7.3E-09 52.7 9.2 85 74-162 1-93 (116)
246 cd05292 LDH_2 A subgroup of L- 97.7 0.00013 2.9E-09 65.0 7.7 66 72-138 1-78 (308)
247 TIGR01850 argC N-acetyl-gamma- 97.7 0.00014 3.1E-09 65.8 7.9 92 72-170 1-104 (346)
248 PRK06270 homoserine dehydrogen 97.7 0.00016 3.4E-09 65.4 8.0 115 71-187 2-148 (341)
249 TIGR01546 GAPDH-II_archae glyc 97.7 0.00012 2.6E-09 65.4 7.0 66 74-139 1-87 (333)
250 PRK03659 glutathione-regulated 97.7 0.00037 8.1E-09 67.8 10.9 109 71-188 400-516 (601)
251 PLN02602 lactate dehydrogenase 97.7 0.00037 8.1E-09 63.0 10.1 94 72-166 38-155 (350)
252 PRK14178 bifunctional 5,10-met 97.7 0.00018 3.9E-09 62.6 7.6 73 71-166 152-225 (279)
253 COG0169 AroE Shikimate 5-dehyd 97.6 0.00029 6.4E-09 61.6 8.6 111 71-188 126-247 (283)
254 PRK04148 hypothetical protein; 97.6 0.00042 9.1E-09 53.6 8.5 67 71-138 17-88 (134)
255 COG1064 AdhP Zn-dependent alco 97.6 0.00021 4.6E-09 63.7 7.7 86 71-164 167-258 (339)
256 PRK14183 bifunctional 5,10-met 97.6 0.00027 5.9E-09 61.5 8.2 73 71-166 157-230 (281)
257 PRK14982 acyl-ACP reductase; P 97.6 0.00015 3.3E-09 65.0 6.6 112 71-195 155-271 (340)
258 COG2910 Putative NADH-flavin r 97.6 0.00013 2.7E-09 58.9 5.4 67 72-138 1-73 (211)
259 PRK09496 trkA potassium transp 97.6 0.00023 5E-09 66.8 7.9 69 72-140 1-78 (453)
260 PRK14186 bifunctional 5,10-met 97.6 0.00037 8.1E-09 61.2 8.3 74 71-167 158-232 (297)
261 PRK14169 bifunctional 5,10-met 97.6 0.00038 8.3E-09 60.7 8.3 73 71-166 156-229 (282)
262 PRK14177 bifunctional 5,10-met 97.6 0.0004 8.7E-09 60.5 8.4 74 71-167 159-233 (284)
263 PRK14173 bifunctional 5,10-met 97.5 0.0004 8.6E-09 60.7 8.3 74 71-167 155-229 (287)
264 PRK14172 bifunctional 5,10-met 97.5 0.00042 9E-09 60.3 8.2 73 71-166 158-231 (278)
265 PRK14027 quinate/shikimate deh 97.5 0.00037 8E-09 61.3 8.0 111 71-188 127-250 (283)
266 PRK14166 bifunctional 5,10-met 97.5 0.00043 9.4E-09 60.3 8.2 73 71-166 157-230 (282)
267 PRK14190 bifunctional 5,10-met 97.5 0.00045 9.7E-09 60.4 8.2 74 71-167 158-232 (284)
268 PRK14170 bifunctional 5,10-met 97.5 0.00046 1E-08 60.2 8.3 74 71-167 157-231 (284)
269 TIGR02356 adenyl_thiF thiazole 97.5 0.0009 1.9E-08 55.9 9.8 34 71-104 21-55 (202)
270 PF13241 NAD_binding_7: Putati 97.5 0.00016 3.4E-09 53.7 4.5 85 71-166 7-92 (103)
271 PLN02968 Probable N-acetyl-gam 97.5 0.00035 7.7E-09 63.9 7.7 94 71-172 38-141 (381)
272 PRK14171 bifunctional 5,10-met 97.5 0.00052 1.1E-08 60.0 8.2 73 71-166 159-232 (288)
273 PRK14180 bifunctional 5,10-met 97.5 0.00051 1.1E-08 59.9 8.1 73 71-166 158-231 (282)
274 PRK14106 murD UDP-N-acetylmura 97.5 0.0018 3.9E-08 60.8 12.3 34 71-104 5-38 (450)
275 PRK14187 bifunctional 5,10-met 97.5 0.00057 1.2E-08 59.9 8.2 73 71-166 160-233 (294)
276 PRK12475 thiamine/molybdopteri 97.5 0.00025 5.4E-09 63.9 6.1 34 71-104 24-58 (338)
277 cd00300 LDH_like L-lactate deh 97.4 0.00072 1.6E-08 60.1 8.9 63 74-137 1-76 (300)
278 PLN02516 methylenetetrahydrofo 97.4 0.0006 1.3E-08 59.9 8.2 73 71-166 167-240 (299)
279 PRK14193 bifunctional 5,10-met 97.4 0.00063 1.4E-08 59.4 8.2 74 71-167 158-234 (284)
280 COG0460 ThrA Homoserine dehydr 97.4 0.0015 3.3E-08 58.1 10.7 168 71-266 3-197 (333)
281 PRK14182 bifunctional 5,10-met 97.4 0.00069 1.5E-08 59.0 8.4 73 71-166 157-230 (282)
282 PRK03369 murD UDP-N-acetylmura 97.4 0.0013 2.9E-08 62.4 11.1 65 71-135 12-78 (488)
283 PRK06718 precorrin-2 dehydroge 97.4 0.0006 1.3E-08 57.0 7.6 74 71-145 10-87 (202)
284 PRK03562 glutathione-regulated 97.4 0.0011 2.3E-08 64.9 10.4 109 71-188 400-516 (621)
285 PRK01710 murD UDP-N-acetylmura 97.4 0.0013 2.9E-08 61.9 10.8 64 71-134 14-84 (458)
286 PRK15076 alpha-galactosidase; 97.4 0.00022 4.8E-09 66.4 5.4 66 72-137 2-85 (431)
287 cd01483 E1_enzyme_family Super 97.4 0.002 4.4E-08 50.6 10.1 113 73-193 1-124 (143)
288 PLN02616 tetrahydrofolate dehy 97.4 0.00064 1.4E-08 60.9 7.9 73 71-166 231-304 (364)
289 PLN02897 tetrahydrofolate dehy 97.4 0.00067 1.4E-08 60.5 7.9 73 71-166 214-287 (345)
290 PRK14181 bifunctional 5,10-met 97.4 0.00084 1.8E-08 58.6 8.2 73 71-166 153-230 (287)
291 PRK08306 dipicolinate synthase 97.4 0.00096 2.1E-08 59.1 8.8 110 71-188 2-119 (296)
292 TIGR02717 AcCoA-syn-alpha acet 97.4 0.0016 3.5E-08 61.1 10.7 107 71-188 7-126 (447)
293 PRK12550 shikimate 5-dehydroge 97.4 0.00085 1.8E-08 58.6 8.2 108 71-188 122-237 (272)
294 PRK00676 hemA glutamyl-tRNA re 97.4 0.00039 8.4E-09 62.2 6.1 59 71-134 174-233 (338)
295 cd05294 LDH-like_MDH_nadp A la 97.4 0.0007 1.5E-08 60.4 7.7 65 72-137 1-82 (309)
296 PRK05678 succinyl-CoA syntheta 97.3 0.0032 7E-08 55.5 11.5 110 71-188 8-121 (291)
297 TIGR01019 sucCoAalpha succinyl 97.3 0.0032 7E-08 55.3 11.5 111 71-188 6-119 (286)
298 PRK12749 quinate/shikimate deh 97.3 0.0012 2.7E-08 58.2 8.9 113 71-188 124-254 (288)
299 PF13460 NAD_binding_10: NADH( 97.3 0.00034 7.4E-09 57.0 5.1 62 74-137 1-70 (183)
300 PF03720 UDPG_MGDP_dh_C: UDP-g 97.3 0.00028 6.1E-09 52.6 3.8 81 82-165 18-101 (106)
301 PRK09414 glutamate dehydrogena 97.3 0.0013 2.7E-08 61.2 8.7 108 71-188 232-365 (445)
302 cd05313 NAD_bind_2_Glu_DH NAD( 97.3 0.00068 1.5E-08 58.3 6.3 108 71-188 38-175 (254)
303 PRK14168 bifunctional 5,10-met 97.3 0.0013 2.8E-08 57.8 8.1 73 71-166 161-238 (297)
304 PRK01390 murD UDP-N-acetylmura 97.3 0.0033 7.2E-08 59.2 11.6 64 71-134 9-72 (460)
305 PLN02383 aspartate semialdehyd 97.3 0.00078 1.7E-08 60.9 6.9 89 71-166 7-101 (344)
306 PRK14185 bifunctional 5,10-met 97.2 0.0015 3.2E-08 57.3 8.1 73 71-166 157-234 (293)
307 PRK14874 aspartate-semialdehyd 97.2 0.00078 1.7E-08 60.8 6.6 88 72-166 2-95 (334)
308 PRK05086 malate dehydrogenase; 97.2 0.0041 8.8E-08 55.6 10.9 66 72-137 1-79 (312)
309 PRK06392 homoserine dehydrogen 97.2 0.0017 3.8E-08 58.1 8.4 110 72-187 1-139 (326)
310 PLN03209 translocon at the inn 97.2 0.0037 8E-08 59.8 11.0 67 70-136 79-168 (576)
311 TIGR01470 cysG_Nterm siroheme 97.2 0.022 4.8E-07 47.6 14.5 67 71-137 9-79 (205)
312 COG0026 PurK Phosphoribosylami 97.2 0.0009 2E-08 59.8 6.3 66 72-137 2-75 (375)
313 CHL00194 ycf39 Ycf39; Provisio 97.2 0.00088 1.9E-08 59.8 6.4 65 72-136 1-73 (317)
314 cd01492 Aos1_SUMO Ubiquitin ac 97.2 0.002 4.4E-08 53.6 7.9 114 71-193 21-145 (197)
315 PRK14167 bifunctional 5,10-met 97.2 0.0018 3.9E-08 56.9 8.0 73 71-166 157-234 (297)
316 PF00208 ELFV_dehydrog: Glutam 97.2 0.0015 3.2E-08 56.2 7.3 110 71-188 32-168 (244)
317 PRK05442 malate dehydrogenase; 97.2 0.0023 4.9E-08 57.4 8.7 66 71-136 4-89 (326)
318 PRK14174 bifunctional 5,10-met 97.1 0.0021 4.5E-08 56.6 8.2 73 71-166 159-236 (295)
319 PLN02520 bifunctional 3-dehydr 97.1 0.0021 4.6E-08 61.5 9.0 111 71-188 379-496 (529)
320 PRK11863 N-acetyl-gamma-glutam 97.1 0.0017 3.6E-08 57.8 7.6 79 71-166 2-82 (313)
321 PRK14184 bifunctional 5,10-met 97.1 0.002 4.2E-08 56.4 7.8 73 71-166 157-234 (286)
322 PRK04308 murD UDP-N-acetylmura 97.1 0.012 2.6E-07 55.2 13.8 35 71-105 5-39 (445)
323 PRK05671 aspartate-semialdehyd 97.1 0.0012 2.6E-08 59.5 6.7 88 71-166 4-98 (336)
324 COG0771 MurD UDP-N-acetylmuram 97.1 0.0041 9E-08 57.8 10.2 123 71-193 7-146 (448)
325 cd01338 MDH_choloroplast_like 97.1 0.0022 4.7E-08 57.5 8.2 67 71-137 2-88 (322)
326 cd00757 ThiF_MoeB_HesA_family 97.1 0.0019 4.1E-08 55.0 7.3 34 71-104 21-55 (228)
327 PRK01438 murD UDP-N-acetylmura 97.1 0.0052 1.1E-07 58.2 11.0 34 71-104 16-49 (480)
328 COG0289 DapB Dihydrodipicolina 97.1 0.0052 1.1E-07 52.7 9.7 115 71-193 2-127 (266)
329 TIGR01759 MalateDH-SF1 malate 97.1 0.0043 9.2E-08 55.6 9.7 67 71-137 3-89 (323)
330 PLN00106 malate dehydrogenase 97.1 0.0019 4.1E-08 57.8 7.4 67 71-137 18-96 (323)
331 PRK06719 precorrin-2 dehydroge 97.1 0.0022 4.8E-08 51.3 7.1 72 71-145 13-87 (157)
332 PRK02472 murD UDP-N-acetylmura 97.1 0.01 2.2E-07 55.7 12.6 65 71-135 5-76 (447)
333 cd05290 LDH_3 A subgroup of L- 97.1 0.0013 2.9E-08 58.5 6.3 65 73-137 1-78 (307)
334 COG0002 ArgC Acetylglutamate s 97.1 0.0027 5.8E-08 56.5 8.0 99 71-176 2-112 (349)
335 cd01487 E1_ThiF_like E1_ThiF_l 97.1 0.0024 5.2E-08 52.0 7.3 32 73-104 1-33 (174)
336 PLN02477 glutamate dehydrogena 97.0 0.0035 7.5E-08 57.8 9.0 107 71-188 206-332 (410)
337 cd01337 MDH_glyoxysomal_mitoch 97.0 0.0029 6.4E-08 56.3 8.1 95 72-166 1-118 (310)
338 COG0190 FolD 5,10-methylene-te 97.0 0.0028 6E-08 54.9 7.6 74 71-167 156-230 (283)
339 TIGR01772 MDH_euk_gproteo mala 97.0 0.0025 5.5E-08 56.8 7.7 94 73-166 1-117 (312)
340 PRK09880 L-idonate 5-dehydroge 97.0 0.0044 9.5E-08 55.9 9.4 88 71-165 170-266 (343)
341 PRK07688 thiamine/molybdopteri 97.0 0.0032 7E-08 56.8 8.4 34 71-104 24-58 (339)
342 KOG3007 Mu-crystallin [Amino a 97.0 0.0022 4.9E-08 54.7 6.8 109 72-189 139-260 (333)
343 COG0300 DltE Short-chain dehyd 97.0 0.0035 7.5E-08 54.3 8.1 43 70-112 5-48 (265)
344 PRK05690 molybdopterin biosynt 97.0 0.0043 9.3E-08 53.4 8.6 113 71-191 32-155 (245)
345 PF02629 CoA_binding: CoA bind 97.0 0.0017 3.6E-08 47.5 5.2 73 71-145 3-79 (96)
346 PRK00141 murD UDP-N-acetylmura 97.0 0.0067 1.4E-07 57.4 10.7 64 71-134 15-81 (473)
347 PF00899 ThiF: ThiF family; I 97.0 0.0086 1.9E-07 46.5 9.5 111 71-192 2-126 (135)
348 TIGR03366 HpnZ_proposed putati 97.0 0.0048 1E-07 54.0 9.0 46 71-116 121-167 (280)
349 PRK05600 thiamine biosynthesis 97.0 0.00067 1.4E-08 61.9 3.6 33 71-103 41-74 (370)
350 PRK08644 thiamine biosynthesis 97.0 0.0026 5.6E-08 53.6 6.8 33 71-103 28-61 (212)
351 PF05368 NmrA: NmrA-like famil 96.9 0.002 4.3E-08 54.8 6.2 64 74-137 1-74 (233)
352 cd08230 glucose_DH Glucose deh 96.9 0.0051 1.1E-07 55.8 9.1 88 71-165 173-269 (355)
353 PRK09496 trkA potassium transp 96.9 0.0081 1.8E-07 56.4 10.7 68 71-138 231-308 (453)
354 TIGR02355 moeB molybdopterin s 96.9 0.005 1.1E-07 52.8 8.4 115 71-193 24-149 (240)
355 PF10100 DUF2338: Uncharacteri 96.9 0.12 2.7E-06 47.0 17.2 202 72-277 2-282 (429)
356 COG1063 Tdh Threonine dehydrog 96.9 0.0049 1.1E-07 56.0 8.5 89 72-167 170-271 (350)
357 TIGR03649 ergot_EASG ergot alk 96.8 0.0042 9.2E-08 54.4 7.5 65 73-137 1-77 (285)
358 COG1648 CysG Siroheme synthase 96.8 0.022 4.8E-07 47.8 11.4 73 71-144 12-89 (210)
359 PRK00421 murC UDP-N-acetylmura 96.8 0.0036 7.7E-08 59.1 7.4 114 71-184 7-134 (461)
360 TIGR01771 L-LDH-NAD L-lactate 96.8 0.0045 9.7E-08 55.0 7.5 62 76-137 1-74 (299)
361 TIGR02853 spore_dpaA dipicolin 96.8 0.013 2.8E-07 51.7 10.3 109 71-187 1-117 (287)
362 PRK05884 short chain dehydroge 96.8 0.012 2.7E-07 49.6 9.9 40 72-111 1-41 (223)
363 COG2344 AT-rich DNA-binding pr 96.8 0.0018 3.9E-08 52.4 4.2 68 71-138 84-157 (211)
364 COG0136 Asd Aspartate-semialde 96.8 0.0079 1.7E-07 53.5 8.7 88 72-166 2-98 (334)
365 PRK14031 glutamate dehydrogena 96.8 0.0042 9.1E-08 57.7 7.2 109 71-188 228-364 (444)
366 PRK08040 putative semialdehyde 96.8 0.0025 5.4E-08 57.3 5.6 89 70-166 3-98 (336)
367 PRK08664 aspartate-semialdehyd 96.8 0.0043 9.3E-08 56.3 7.2 88 71-166 3-108 (349)
368 cd01336 MDH_cytoplasmic_cytoso 96.8 0.014 2.9E-07 52.5 10.2 67 71-137 2-88 (325)
369 COG0334 GdhA Glutamate dehydro 96.7 0.008 1.7E-07 54.8 8.4 107 71-188 207-333 (411)
370 PRK03803 murD UDP-N-acetylmura 96.7 0.013 2.9E-07 55.0 10.3 116 71-186 6-137 (448)
371 PLN00112 malate dehydrogenase 96.7 0.0066 1.4E-07 56.5 8.0 67 71-137 100-186 (444)
372 PF00185 OTCace: Aspartate/orn 96.7 0.01 2.3E-07 47.5 8.1 67 71-137 2-83 (158)
373 TIGR01851 argC_other N-acetyl- 96.7 0.0074 1.6E-07 53.5 7.8 78 72-166 2-81 (310)
374 PRK05993 short chain dehydroge 96.7 0.0035 7.7E-08 54.7 5.9 44 70-113 3-47 (277)
375 cd01486 Apg7 Apg7 is an E1-lik 96.7 0.0047 1E-07 54.3 6.5 31 73-103 1-32 (307)
376 PTZ00325 malate dehydrogenase; 96.7 0.0042 9E-08 55.6 6.3 67 71-137 8-86 (321)
377 PRK05597 molybdopterin biosynt 96.7 0.0052 1.1E-07 55.9 7.1 34 71-104 28-62 (355)
378 cd01485 E1-1_like Ubiquitin ac 96.7 0.016 3.4E-07 48.3 9.4 116 71-193 19-148 (198)
379 PRK07411 hypothetical protein; 96.7 0.0021 4.5E-08 59.2 4.4 33 71-103 38-71 (390)
380 TIGR01296 asd_B aspartate-semi 96.7 0.0026 5.7E-08 57.4 4.9 87 73-166 1-93 (339)
381 PRK08762 molybdopterin biosynt 96.6 0.013 2.8E-07 53.8 9.4 34 71-104 135-169 (376)
382 KOG0023 Alcohol dehydrogenase, 96.6 0.0069 1.5E-07 53.3 7.0 39 71-109 182-220 (360)
383 TIGR01758 MDH_euk_cyt malate d 96.6 0.0062 1.4E-07 54.6 7.0 65 73-137 1-85 (324)
384 PRK08328 hypothetical protein; 96.6 0.021 4.6E-07 48.7 9.8 115 71-193 27-153 (231)
385 PRK02006 murD UDP-N-acetylmura 96.6 0.033 7.2E-07 53.1 12.1 64 71-134 7-76 (498)
386 PLN02353 probable UDP-glucose 96.6 0.017 3.8E-07 54.5 9.8 109 71-188 324-464 (473)
387 COG4091 Predicted homoserine d 96.6 0.027 5.9E-07 50.1 10.2 149 71-232 17-184 (438)
388 PRK06813 homoserine dehydrogen 96.5 0.013 2.9E-07 52.9 8.5 111 71-187 2-145 (346)
389 COG0039 Mdh Malate/lactate deh 96.5 0.0067 1.5E-07 53.7 6.3 64 72-135 1-77 (313)
390 COG4074 Mth H2-forming N5,N10- 96.5 0.11 2.4E-06 43.3 12.9 105 114-224 126-232 (343)
391 TIGR02822 adh_fam_2 zinc-bindi 96.5 0.014 3.1E-07 52.4 8.6 89 71-166 166-255 (329)
392 PF10728 DUF2520: Domain of un 96.5 0.015 3.3E-07 45.0 7.4 72 206-280 5-79 (132)
393 PRK06728 aspartate-semialdehyd 96.5 0.006 1.3E-07 55.0 5.9 88 71-166 5-100 (347)
394 PRK01368 murD UDP-N-acetylmura 96.5 0.02 4.3E-07 53.9 9.6 63 71-134 6-70 (454)
395 cd00704 MDH Malate dehydrogena 96.4 0.0063 1.4E-07 54.6 5.9 65 73-137 2-86 (323)
396 TIGR01087 murD UDP-N-acetylmur 96.4 0.022 4.8E-07 53.2 9.9 113 73-185 1-130 (433)
397 TIGR01202 bchC 2-desacetyl-2-h 96.4 0.015 3.2E-07 51.8 8.2 86 71-165 145-231 (308)
398 PRK06019 phosphoribosylaminoim 96.4 0.0095 2E-07 54.6 7.1 62 71-132 2-68 (372)
399 cd05188 MDR Medium chain reduc 96.4 0.022 4.9E-07 48.7 9.1 90 71-167 135-234 (271)
400 TIGR03855 NAD_NadX aspartate d 96.4 0.016 3.4E-07 49.3 7.9 85 97-188 5-94 (229)
401 PRK07878 molybdopterin biosynt 96.4 0.0038 8.2E-08 57.6 4.4 34 71-104 42-76 (392)
402 TIGR01757 Malate-DH_plant mala 96.4 0.023 5E-07 52.1 9.4 67 71-137 44-130 (387)
403 TIGR01381 E1_like_apg7 E1-like 96.4 0.0071 1.5E-07 58.4 6.0 33 71-103 338-371 (664)
404 PF02056 Glyco_hydro_4: Family 96.4 0.0086 1.9E-07 49.0 5.7 65 73-137 1-83 (183)
405 KOG1502 Flavonol reductase/cin 96.3 0.015 3.4E-07 51.6 7.6 64 71-134 6-85 (327)
406 KOG0399 Glutamate synthase [Am 96.3 0.013 2.9E-07 59.3 7.8 70 69-138 1783-1881(2142)
407 PRK12769 putative oxidoreducta 96.3 0.015 3.2E-07 57.4 8.3 67 71-137 327-422 (654)
408 PLN02775 Probable dihydrodipic 96.3 0.056 1.2E-06 47.3 10.7 115 71-193 11-137 (286)
409 PRK08223 hypothetical protein; 96.3 0.034 7.3E-07 48.8 9.4 34 71-104 27-61 (287)
410 TIGR03201 dearomat_had 6-hydro 96.3 0.021 4.6E-07 51.6 8.5 45 71-115 167-211 (349)
411 PRK14030 glutamate dehydrogena 96.3 0.019 4.1E-07 53.4 8.1 108 71-188 228-365 (445)
412 PRK05866 short chain dehydroge 96.2 0.023 5E-07 50.2 8.4 40 71-110 40-80 (293)
413 PTZ00079 NADP-specific glutama 96.2 0.026 5.6E-07 52.5 8.8 109 71-188 237-374 (454)
414 PF00070 Pyr_redox: Pyridine n 96.2 0.012 2.6E-07 41.2 5.2 34 73-106 1-34 (80)
415 PRK07454 short chain dehydroge 96.2 0.02 4.3E-07 48.7 7.5 39 71-109 6-45 (241)
416 cd08239 THR_DH_like L-threonin 96.2 0.032 7E-07 50.1 9.2 45 71-115 164-209 (339)
417 PRK12939 short chain dehydroge 96.2 0.023 4.9E-07 48.4 7.9 39 71-109 7-46 (250)
418 PLN02662 cinnamyl-alcohol dehy 96.2 0.024 5.2E-07 50.4 8.3 65 71-135 4-84 (322)
419 TIGR02130 dapB_plant dihydrodi 96.2 0.068 1.5E-06 46.5 10.6 112 73-193 2-126 (275)
420 TIGR00978 asd_EA aspartate-sem 96.2 0.013 2.9E-07 53.0 6.6 88 72-166 1-105 (341)
421 PRK02705 murD UDP-N-acetylmura 96.1 0.043 9.4E-07 51.6 10.1 63 73-135 2-76 (459)
422 PRK12809 putative oxidoreducta 96.1 0.02 4.4E-07 56.3 8.1 67 71-137 310-405 (639)
423 TIGR02964 xanthine_xdhC xanthi 96.1 0.093 2E-06 45.2 11.2 35 71-105 100-134 (246)
424 TIGR03466 HpnA hopanoid-associ 96.1 0.01 2.2E-07 52.8 5.4 65 72-136 1-73 (328)
425 PRK06180 short chain dehydroge 96.1 0.03 6.5E-07 48.8 8.3 40 71-110 4-44 (277)
426 PRK05786 fabG 3-ketoacyl-(acyl 96.1 0.018 3.9E-07 48.7 6.7 40 71-110 5-45 (238)
427 PRK06197 short chain dehydroge 96.1 0.053 1.2E-06 48.0 9.9 38 71-108 16-54 (306)
428 TIGR01082 murC UDP-N-acetylmur 96.1 0.065 1.4E-06 50.3 10.9 112 73-184 1-126 (448)
429 COG1090 Predicted nucleoside-d 96.1 0.023 4.9E-07 49.2 7.0 60 78-137 6-66 (297)
430 PLN00141 Tic62-NAD(P)-related 96.1 0.018 4E-07 49.4 6.7 66 71-136 17-94 (251)
431 PRK09466 metL bifunctional asp 96.1 0.085 1.8E-06 53.1 12.1 170 71-267 458-660 (810)
432 cd08237 ribitol-5-phosphate_DH 96.0 0.041 8.8E-07 49.7 9.1 89 71-165 164-256 (341)
433 PRK12429 3-hydroxybutyrate deh 96.0 0.026 5.6E-07 48.3 7.5 40 71-110 4-44 (258)
434 cd01488 Uba3_RUB Ubiquitin act 96.0 0.024 5.3E-07 49.9 7.3 31 73-103 1-32 (291)
435 KOG0022 Alcohol dehydrogenase, 96.0 0.034 7.4E-07 48.9 7.9 52 71-122 193-245 (375)
436 PRK05653 fabG 3-ketoacyl-(acyl 96.0 0.029 6.3E-07 47.4 7.7 38 71-108 5-43 (246)
437 cd01489 Uba2_SUMO Ubiquitin ac 96.0 0.026 5.6E-07 50.3 7.4 32 73-104 1-33 (312)
438 PRK12826 3-ketoacyl-(acyl-carr 96.0 0.021 4.6E-07 48.6 6.8 39 70-108 5-44 (251)
439 PF04016 DUF364: Domain of unk 96.0 0.0063 1.4E-07 48.1 3.1 87 71-167 11-97 (147)
440 PRK06139 short chain dehydroge 96.0 0.035 7.5E-07 50.0 8.3 40 71-110 7-47 (330)
441 PRK08643 acetoin reductase; Va 96.0 0.026 5.7E-07 48.4 7.3 39 71-109 2-41 (256)
442 PLN02427 UDP-apiose/xylose syn 96.0 0.019 4E-07 52.8 6.7 65 71-135 14-94 (386)
443 PRK07326 short chain dehydroge 96.0 0.032 6.8E-07 47.2 7.7 40 71-110 6-46 (237)
444 PLN02695 GDP-D-mannose-3',5'-e 96.0 0.012 2.5E-07 53.9 5.3 65 71-135 21-93 (370)
445 PRK07774 short chain dehydroge 96.0 0.029 6.4E-07 47.8 7.5 38 71-108 6-44 (250)
446 TIGR01318 gltD_gamma_fam gluta 96.0 0.031 6.6E-07 52.9 8.2 68 71-138 141-237 (467)
447 PLN02586 probable cinnamyl alc 96.0 0.051 1.1E-06 49.5 9.4 88 71-165 184-278 (360)
448 PRK08265 short chain dehydroge 96.0 0.04 8.7E-07 47.6 8.4 40 71-110 6-46 (261)
449 cd08281 liver_ADH_like1 Zinc-d 95.9 0.033 7.1E-07 50.9 8.1 45 71-115 192-237 (371)
450 PRK07024 short chain dehydroge 95.9 0.027 5.9E-07 48.5 7.1 40 71-110 2-42 (257)
451 PRK15116 sulfur acceptor prote 95.9 0.32 6.9E-06 42.4 13.6 34 71-104 30-64 (268)
452 COG4408 Uncharacterized protei 95.9 0.29 6.2E-06 43.4 13.1 201 71-277 4-284 (431)
453 PLN02780 ketoreductase/ oxidor 95.9 0.026 5.7E-07 50.5 7.2 40 71-110 53-93 (320)
454 PRK05717 oxidoreductase; Valid 95.9 0.048 1E-06 46.8 8.6 39 71-109 10-49 (255)
455 PRK07890 short chain dehydroge 95.9 0.031 6.7E-07 47.9 7.4 39 71-109 5-44 (258)
456 PRK04690 murD UDP-N-acetylmura 95.9 0.022 4.8E-07 53.9 6.8 65 71-135 8-77 (468)
457 PLN02896 cinnamyl-alcohol dehy 95.9 0.023 4.9E-07 51.5 6.7 65 71-135 10-87 (353)
458 PRK14573 bifunctional D-alanyl 95.9 0.024 5.2E-07 57.3 7.4 114 71-184 4-131 (809)
459 PLN02948 phosphoribosylaminoim 95.9 0.038 8.3E-07 53.5 8.5 66 71-136 22-92 (577)
460 PRK13394 3-hydroxybutyrate deh 95.8 0.034 7.4E-07 47.7 7.4 40 71-110 7-47 (262)
461 PRK08862 short chain dehydroge 95.8 0.035 7.7E-07 47.1 7.4 40 71-110 5-45 (227)
462 PRK06179 short chain dehydroge 95.8 0.047 1E-06 47.3 8.3 36 71-106 4-40 (270)
463 PRK06182 short chain dehydroge 95.8 0.061 1.3E-06 46.7 9.0 40 71-110 3-43 (273)
464 cd08245 CAD Cinnamyl alcohol d 95.8 0.049 1.1E-06 48.6 8.6 89 71-166 163-257 (330)
465 PRK07478 short chain dehydroge 95.8 0.042 9E-07 47.1 7.8 40 71-110 6-46 (254)
466 TIGR03736 PRTRC_ThiF PRTRC sys 95.8 0.037 8.1E-07 47.4 7.2 33 71-103 11-54 (244)
467 PLN02178 cinnamyl-alcohol dehy 95.8 0.052 1.1E-06 49.8 8.7 88 71-165 179-273 (375)
468 PLN02740 Alcohol dehydrogenase 95.8 0.058 1.3E-06 49.5 9.1 45 71-115 199-244 (381)
469 PRK08017 oxidoreductase; Provi 95.8 0.021 4.6E-07 48.9 5.9 42 71-112 2-44 (256)
470 PRK07523 gluconate 5-dehydroge 95.8 0.043 9.2E-07 47.1 7.7 38 71-108 10-48 (255)
471 PRK03815 murD UDP-N-acetylmura 95.8 0.044 9.4E-07 50.8 8.2 59 72-134 1-61 (401)
472 PRK07814 short chain dehydroge 95.8 0.044 9.5E-07 47.3 7.8 40 71-110 10-50 (263)
473 PRK06598 aspartate-semialdehyd 95.8 0.02 4.3E-07 52.1 5.7 87 72-166 2-99 (369)
474 PRK06200 2,3-dihydroxy-2,3-dih 95.7 0.062 1.3E-06 46.3 8.6 41 71-111 6-47 (263)
475 cd08255 2-desacetyl-2-hydroxye 95.7 0.1 2.2E-06 45.2 10.0 90 71-167 98-192 (277)
476 PRK09186 flagellin modificatio 95.7 0.052 1.1E-06 46.5 8.1 40 71-110 4-44 (256)
477 PRK12384 sorbitol-6-phosphate 95.7 0.052 1.1E-06 46.6 8.1 39 71-109 2-41 (259)
478 COG4221 Short-chain alcohol de 95.7 0.057 1.2E-06 45.9 7.9 86 71-168 6-92 (246)
479 PRK05867 short chain dehydroge 95.7 0.042 9E-07 47.1 7.4 40 71-110 9-49 (253)
480 PRK10538 malonic semialdehyde 95.7 0.054 1.2E-06 46.3 8.1 39 72-110 1-40 (248)
481 COG1004 Ugd Predicted UDP-gluc 95.7 0.047 1E-06 49.6 7.8 73 71-144 310-392 (414)
482 PRK00856 pyrB aspartate carbam 95.7 0.031 6.7E-07 49.7 6.6 62 71-134 156-220 (305)
483 PRK00517 prmA ribosomal protei 95.7 0.093 2E-06 45.3 9.5 111 71-188 120-235 (250)
484 PRK06124 gluconate 5-dehydroge 95.7 0.054 1.2E-06 46.4 8.1 39 71-109 11-50 (256)
485 PLN02214 cinnamoyl-CoA reducta 95.7 0.026 5.6E-07 51.0 6.3 66 71-136 10-90 (342)
486 cd01484 E1-2_like Ubiquitin ac 95.7 0.046 1E-06 46.7 7.4 32 73-104 1-33 (234)
487 cd05283 CAD1 Cinnamyl alcohol 95.7 0.055 1.2E-06 48.6 8.4 89 71-166 170-264 (337)
488 PRK06940 short chain dehydroge 95.7 0.051 1.1E-06 47.4 7.9 39 70-109 1-39 (275)
489 PRK04663 murD UDP-N-acetylmura 95.7 0.18 3.9E-06 47.3 12.0 112 72-184 8-135 (438)
490 PLN02657 3,8-divinyl protochlo 95.7 0.014 3.1E-07 53.7 4.6 37 70-106 59-96 (390)
491 PRK08213 gluconate 5-dehydroge 95.7 0.045 9.8E-07 47.0 7.5 39 71-109 12-51 (259)
492 TIGR03451 mycoS_dep_FDH mycoth 95.7 0.053 1.2E-06 49.2 8.3 45 71-115 177-222 (358)
493 PRK10537 voltage-gated potassi 95.7 0.061 1.3E-06 49.6 8.6 109 71-190 240-356 (393)
494 PRK12814 putative NADPH-depend 95.6 0.05 1.1E-06 53.7 8.5 68 71-138 193-289 (652)
495 PLN02989 cinnamyl-alcohol dehy 95.6 0.053 1.1E-06 48.4 8.0 66 71-136 5-86 (325)
496 PRK08163 salicylate hydroxylas 95.6 0.019 4.2E-07 52.7 5.2 36 70-105 3-38 (396)
497 PRK07109 short chain dehydroge 95.6 0.061 1.3E-06 48.5 8.3 39 71-109 8-47 (334)
498 COG0057 GapA Glyceraldehyde-3- 95.6 0.023 5E-07 50.3 5.3 31 72-102 2-34 (335)
499 PRK08589 short chain dehydroge 95.6 0.067 1.5E-06 46.5 8.4 37 71-108 6-43 (272)
500 PF00289 CPSase_L_chain: Carba 95.6 0.17 3.7E-06 37.8 9.3 99 71-189 2-105 (110)
No 1
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=6.4e-38 Score=270.11 Aligned_cols=217 Identities=35% Similarity=0.564 Sum_probs=208.0
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc-hhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+||++||+|.||..+|++|.+.|++|.+|||++++ .+.+++.|.....+..|+++++|+||+++|.+++++.++++...
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 47999999999999999999999999999999998 55566679999999999999999999999999999999987678
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEE
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY 230 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 230 (290)
+.+.+++|+++||+|+.++...+++.+.++++|++|+|+|+++++..+..+.+++++||+++.+++++++|+.+|.++++
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~ 160 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVH 160 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccCC
Q 022909 231 LGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDGN 288 (290)
Q Consensus 231 ~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~~ 288 (290)
+|+.|.+...|+++|++...+ .+++|++.++++.|+|++.+.+++..+..+||.+.++
T Consensus 161 ~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~ 219 (286)
T COG2084 161 VGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENY 219 (286)
T ss_pred ECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhh
Confidence 999999999999999999888 9999999999999999999999999999999998764
No 2
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=3e-34 Score=242.96 Aligned_cols=218 Identities=40% Similarity=0.651 Sum_probs=210.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
.++||+||+|.||..++..|.+.||+|++|||+.++.+++++.|....+++.|+.++||+||.++|.+.+.++++++...
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~G 114 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSG 114 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999988778
Q ss_pred ccccCCCCCEE-EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEE
Q 022909 151 AASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF 229 (290)
Q Consensus 151 ~~~~~~~~~~l-in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~ 229 (290)
+++.++++... ||.|+.+|....++.+++..++.+|+++|++++...+..+.++++++|+++.++....+++.+|++++
T Consensus 115 vl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~ 194 (327)
T KOG0409|consen 115 VLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVV 194 (327)
T ss_pred ceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEE
Confidence 88888898877 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccCC
Q 022909 230 YLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDGN 288 (290)
Q Consensus 230 ~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~~ 288 (290)
++|..|.+..+|+++|.+.+.. .+++|++.++++.|+|..++.+++++...+|+.+.++
T Consensus 195 ~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~ 254 (327)
T KOG0409|consen 195 FLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNP 254 (327)
T ss_pred EecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCc
Confidence 9999999999999999998888 9999999999999999999999999999999988775
No 3
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=4.9e-33 Score=245.94 Aligned_cols=216 Identities=25% Similarity=0.417 Sum_probs=199.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 151 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~ 151 (290)
++|+|||+|.||..+++.|...|++|.+|||++++.+.+.+.+...+.+..++++++|+|++++|.+..++.++.....+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 47999999999999999999999999999999999888888888888899999999999999999988888888544456
Q ss_pred cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEe
Q 022909 152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231 (290)
Q Consensus 152 ~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 231 (290)
+..++++.++||+|++.+...+++.+.+.++++.|+++|+++++.....+.++++++++++.+++++++|+.+|..++++
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~ 161 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA 161 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEee
Confidence 77789999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccC
Q 022909 232 GDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDG 287 (290)
Q Consensus 232 ~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~ 287 (290)
++.|.+..+|++.|++...+ ..++|++.++++.|+|++.+.+++..+..+++.+..
T Consensus 162 g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~ 218 (296)
T PRK15461 162 GGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTT 218 (296)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHc
Confidence 99999999999999998777 999999999999999999999999998888776544
No 4
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=1.2e-32 Score=242.63 Aligned_cols=215 Identities=29% Similarity=0.451 Sum_probs=196.6
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 151 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~ 151 (290)
|+|||||+|+||..+++.|.+.|++|.+||++++ .+.+.+.|...+.+..++++++|+|++++|.+++++.++++...+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 3799999999999999999999999999999874 566666788778899999999999999999988899988543446
Q ss_pred cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEe
Q 022909 152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231 (290)
Q Consensus 152 ~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 231 (290)
.+.+++|+++||+|+..+...+++.+.+.+.++.|+++|+++++.....+.+.++++|+++.+++++++|+.+|.+++++
T Consensus 80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~ 159 (292)
T PRK15059 80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLV 159 (292)
T ss_pred hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEe
Confidence 67788999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccC
Q 022909 232 GDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDG 287 (290)
Q Consensus 232 ~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~ 287 (290)
++.|++..+|+++|++...+ .++.|++.++++.|+|++++.+++......|+.+..
T Consensus 160 G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~ 216 (292)
T PRK15059 160 GGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEV 216 (292)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHh
Confidence 99999999999999998877 999999999999999999999999988888887653
No 5
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=7.2e-32 Score=238.95 Aligned_cols=217 Identities=31% Similarity=0.519 Sum_probs=198.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
.++|||||+|.||..+++.+...|++|.+|||++++.+.+.+.+...+++.+++++++|+|++++|.+.+++.+++..++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~ 81 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENG 81 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcch
Confidence 47899999999999999999999999999999998888777778877888999999999999999998888888754345
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEE
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY 230 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~ 230 (290)
+.+.+++++++||+|+..+...+++.+.+.+++++|+++|++++++....+.+.+++++++++++.+.++++.+|..+++
T Consensus 82 ~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~ 161 (296)
T PRK11559 82 IIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVH 161 (296)
T ss_pred HhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEE
Confidence 67788999999999999999999999999999999999999999887778888899999999999999999999999999
Q ss_pred eCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccC
Q 022909 231 LGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDG 287 (290)
Q Consensus 231 ~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~ 287 (290)
+++.+.+..+|++.|.+.+.+ .+++|++.++++.|++++++.+++.....+|+.+..
T Consensus 162 ~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~ 219 (296)
T PRK11559 162 TGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDA 219 (296)
T ss_pred eCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHh
Confidence 999999999999999998888 999999999999999999999999988888776543
No 6
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=1.3e-31 Score=236.79 Aligned_cols=215 Identities=30% Similarity=0.494 Sum_probs=196.1
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccccc
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAA 152 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~ 152 (290)
+|||||+|.||..+++.|...|++|.+|||++++.+.+.+.|....++.+++++++|+|++++|.+..++.+++..+.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 59999999999999999999999999999999888888888887778899999999999999999888888874333456
Q ss_pred ccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeC
Q 022909 153 SGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLG 232 (290)
Q Consensus 153 ~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~ 232 (290)
..+++++++||+|+..+.+.+++.+.+++++++|+++|+++++.....+.+.+++++++++++.++++++.+|.++++++
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g 160 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVG 160 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeC
Confidence 77899999999999999999999999999999999999999887777788888999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccC
Q 022909 233 DVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDG 287 (290)
Q Consensus 233 ~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~ 287 (290)
+.+.+...|+++|.+.... .+++|++.++++.|+|++++.+++..+..+|+.+..
T Consensus 161 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~ 216 (291)
T TIGR01505 161 GNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEV 216 (291)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHh
Confidence 9999999999999998887 999999999999999999999999988888886643
No 7
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=2e-31 Score=235.01 Aligned_cols=211 Identities=31% Similarity=0.445 Sum_probs=196.0
Q ss_pred EEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccC
Q 022909 76 FLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGM 155 (290)
Q Consensus 76 iiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~ 155 (290)
|||+|.||..+++.|.+.|++|.+|||++++.+.+.+.|....++..++++++|+|++++|.+..++.++.+.+.+.+.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999999988888888888888999999999999999999888888885445667788
Q ss_pred CCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCcc
Q 022909 156 GPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVG 235 (290)
Q Consensus 156 ~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g 235 (290)
++++++||+|+..+...+.+.+.++++++.|+++|+++++.....+.+.++++|+++.+++++++|+.+|.+++++++.|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g 160 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHG 160 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCC
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCcccc
Q 022909 236 NGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 236 ~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
.+..+|+++|.+.... .+++|++.++++.|+|++++.+++....++||.+.
T Consensus 161 ~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~ 212 (288)
T TIGR01692 161 AGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSD 212 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHH
Confidence 9999999999988877 89999999999999999999999999888888654
No 8
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=4.6e-31 Score=233.77 Aligned_cols=211 Identities=21% Similarity=0.314 Sum_probs=191.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhc---CCeEEEEeCChhHHHHHhccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS---CDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---aDivv~~~p~~~~~~~~~~~~ 148 (290)
|+|||||+|+||..++++|.+.|++|.+|||++++.+.+.+.|...+.+.++++++ +|+|++++|.+..++.++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~--- 77 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI--- 77 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH---
Confidence 47999999999999999999999999999999988888877888888899998876 699999999987888887
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC--
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK-- 226 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~-- 226 (290)
.++.+.++++.++||+|+..+.+..++.+.+.++++.|+++|+++++.....+. .++++|+++++++++++|+.+|.
T Consensus 78 ~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~ 156 (299)
T PRK12490 78 KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEG 156 (299)
T ss_pred HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcC
Confidence 356777899999999999999999999999999999999999999988887887 68899999999999999999997
Q ss_pred -cEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC--CCHHHHHHHHhh-cCCCCcccc
Q 022909 227 -SRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVD--FLINTVTMFLQS-FSFGNLQYD 286 (290)
Q Consensus 227 -~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G--~~~~~~~~~i~~-~~~gs~~~~ 286 (290)
.++++++.|.+..+|++.|++...+ .+++|++.++++.| +|++++.++++. ...+|+.+.
T Consensus 157 ~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~ 221 (299)
T PRK12490 157 PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLD 221 (299)
T ss_pred CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHH
Confidence 7899999999999999999998887 99999999999999 999999999996 446666553
No 9
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=99.98 E-value=8.7e-33 Score=244.52 Aligned_cols=178 Identities=17% Similarity=0.171 Sum_probs=155.1
Q ss_pred CeeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCC-CcccccccccccccCCCccccCCCCeEEEEcc
Q 022909 1 MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKP-LFPLSFKVFSSQATGVSAEADELPGRIGFLGM 79 (290)
Q Consensus 1 ~~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~ 79 (290)
|++-.+|+|+++ +++|++++|+|++.|+++++++.+++|.|.... ...+..+.+. ++|+||||+
T Consensus 90 I~Vtnvp~~~t~--sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~-------------gktvGIiG~ 154 (324)
T COG1052 90 ITVTNVPGYSTE--AVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLR-------------GKTLGIIGL 154 (324)
T ss_pred cEEEeCCCCCch--HHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCC-------------CCEEEEECC
Confidence 456677889999 999999999999999999999999999998653 2222224454 899999999
Q ss_pred cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCC
Q 022909 80 GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGK 159 (290)
Q Consensus 80 G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~ 159 (290)
|+||+++|++++.||++|.+|+|++. .+..++.+..+.+ +++++++||+|+++||.+++|++++ +++.++.||+++
T Consensus 155 GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLi--n~~~l~~mk~ga 230 (324)
T COG1052 155 GRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLI--NAEELAKMKPGA 230 (324)
T ss_pred CHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhc--CHHHHHhCCCCe
Confidence 99999999999999999999999986 3333344566665 9999999999999999999999999 889999999999
Q ss_pred EEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 160 GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 160 ~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
++||++||+.+|+++|.++|+++.+.....+++..++.
T Consensus 231 ~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~ 268 (324)
T COG1052 231 ILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPA 268 (324)
T ss_pred EEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCC
Confidence 99999999999999999999999988888888877765
No 10
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.98 E-value=1.3e-30 Score=241.92 Aligned_cols=211 Identities=20% Similarity=0.284 Sum_probs=189.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC----CCc---cCCCHHHHhhc---CCeEEEEeCChhH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAK---YQPSPDEVAAS---CDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~---~~~~~~~~~~~---aDivv~~~p~~~~ 140 (290)
.++|||||+|.||..+|++|...|++|.+|||++++.+.+.+. |.. .+.+++|+++. +|+|++++|..+.
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~a 85 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAP 85 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHH
Confidence 4789999999999999999999999999999999988877653 433 56789999876 9999999999999
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHH
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPL 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 220 (290)
++.++ ..+++.+++|.++||+|+..+.++.++.+.+.++|++|+++|+++++..+..++ ++++||+++++++++++
T Consensus 86 V~~Vi---~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~pv 161 (493)
T PLN02350 86 VDQTI---KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDI 161 (493)
T ss_pred HHHHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHHH
Confidence 99998 457888999999999999999999999999999999999999999999999998 78999999999999999
Q ss_pred HHHhCC------cEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHH-CCCCHHHHHHHHh---hcCCCCccc
Q 022909 221 LDIMGK------SRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEF-VDFLINTVTMFLQ---SFSFGNLQY 285 (290)
Q Consensus 221 l~~~G~------~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~-~G~~~~~~~~~i~---~~~~gs~~~ 285 (290)
|+.++. .++++|+.|+++++|++.|.+...+ .+++|++.++++ .|+|++++.+++. ....+|+.+
T Consensus 162 L~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~ll 237 (493)
T PLN02350 162 LEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLI 237 (493)
T ss_pred HHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHH
Confidence 999985 3889999999999999999998877 999999999998 5999999999965 444445443
No 11
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.97 E-value=6.3e-30 Score=226.78 Aligned_cols=210 Identities=23% Similarity=0.304 Sum_probs=191.2
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhc---CCeEEEEeCChhHHHHHhccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS---CDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---aDivv~~~p~~~~~~~~~~~~ 148 (290)
|+|||||+|.||+.+++.|...|++|.+|||++++.+.+.+.|+..+++.+++++. +|+|++++|....++.++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~--- 77 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI--- 77 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH---
Confidence 47999999999999999999999999999999998888888888888899998876 699999999877888887
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC--
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK-- 226 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~-- 226 (290)
..+.+.++++.++||+|++.+....++.+.++++++.|+++|+++++..+..+. .++++|+++++++++++|+.++.
T Consensus 78 ~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~ 156 (301)
T PRK09599 78 DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRA 156 (301)
T ss_pred HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcccc
Confidence 356777899999999999999999999999999999999999999988877775 78899999999999999999998
Q ss_pred --cEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHH--CCCCHHHHHHHHhhcC-CCCccc
Q 022909 227 --SRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEF--VDFLINTVTMFLQSFS-FGNLQY 285 (290)
Q Consensus 227 --~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~--~G~~~~~~~~~i~~~~-~gs~~~ 285 (290)
+++++|+.|++..+|++.|.+...+ .+++|++.++++ .|+|++++.++++... .+|+.+
T Consensus 157 ~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l 221 (301)
T PRK09599 157 EDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLL 221 (301)
T ss_pred cCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHH
Confidence 7899999999999999999998777 999999999999 9999999999999764 566654
No 12
>PLN02858 fructose-bisphosphate aldolase
Probab=99.97 E-value=6.4e-30 Score=262.00 Aligned_cols=218 Identities=20% Similarity=0.310 Sum_probs=205.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
.++||+||+|.||..+|++|.+.|++|.+|||++++.+.+.+.|...+++..|+.++||+|++++|.++.++.++++...
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g 83 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEG 83 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhh
Confidence 58899999999999999999999999999999999999999889989999999999999999999999999999876567
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcC--CcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcE
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATG--ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR 228 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~ 228 (290)
+++.+++|.++||+|+..+...+++.+.+.+++ +.|+++|+++++..+..+.+++++||+++.+++++++|+.+|..+
T Consensus 84 ~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i 163 (1378)
T PLN02858 84 AAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKL 163 (1378)
T ss_pred HHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCce
Confidence 788899999999999999999999999999998 899999999999999999999999999999999999999999988
Q ss_pred EE-eCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccCC
Q 022909 229 FY-LGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDGN 288 (290)
Q Consensus 229 ~~-~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~~ 288 (290)
++ +|+.|.+..+|+++|++.+.+ .+++|++.++++.|+|++.+.+++..+.++||.+..+
T Consensus 164 ~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~ 225 (1378)
T PLN02858 164 YTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNH 225 (1378)
T ss_pred EEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhh
Confidence 76 489999999999999998888 9999999999999999999999999999999987644
No 13
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.97 E-value=2.7e-31 Score=235.22 Aligned_cols=177 Identities=14% Similarity=0.132 Sum_probs=149.7
Q ss_pred eeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHh
Q 022909 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (290)
Q Consensus 3 ~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~i 82 (290)
+++|..++. ..+++|++++++|++.|+++.+++.+++|.|.+.... + .++. ++|+||||+|+|
T Consensus 91 ~V~nap~~n-a~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~--g-~el~-------------gkTvGIiG~G~I 153 (324)
T COG0111 91 LVVNAPGGN-AISVAELVLALLLALARRIPDADASQRRGEWDRKAFR--G-TELA-------------GKTVGIIGLGRI 153 (324)
T ss_pred EEEeCCCcc-hHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccc--c-cccc-------------CCEEEEECCCHH
Confidence 355555444 4599999999999999999999999999999862111 1 3444 899999999999
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li 162 (290)
|+.+|++++.+|++|++||+...+. .....+....+++++++++||+|++|+|.|++|++++ +++.+..||+|++||
T Consensus 154 G~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i--~~~~~a~MK~gailI 230 (324)
T COG0111 154 GRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLI--NAEELAKMKPGAILI 230 (324)
T ss_pred HHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhccc--CHHHHhhCCCCeEEE
Confidence 9999999999999999999954432 2223456667899999999999999999999999999 889999999999999
Q ss_pred EecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcccc
Q 022909 163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE 199 (290)
Q Consensus 163 n~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~ 199 (290)
|++||..+++++|.++|+++.+....-++|..||...
T Consensus 231 N~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~ 267 (324)
T COG0111 231 NAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPA 267 (324)
T ss_pred ECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCC
Confidence 9999999999999999999988877778888776543
No 14
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.97 E-value=2.7e-29 Score=232.92 Aligned_cols=207 Identities=19% Similarity=0.272 Sum_probs=188.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC----C--CccCCCHHHHhh---cCCeEEEEeCChhHHH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----G--AKYQPSPDEVAA---SCDVTFAMLADPESAM 142 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~---~aDivv~~~p~~~~~~ 142 (290)
.+|||||+|.||..+|++|...|++|.+|||++++.+.+.+. | +..+++++++++ ++|+|++++|.++.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 479999999999999999999999999999999988777653 4 345778999887 4899999999999999
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHH
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD 222 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~ 222 (290)
.++ +++.+.+++|.++||++++.+.++....+.+.++|++|+++|+++++..+..++ ++++||+++++++++++|+
T Consensus 82 ~vi---~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~ 157 (470)
T PTZ00142 82 ETI---DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILE 157 (470)
T ss_pred HHH---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHH
Confidence 998 457888999999999999999999999999999999999999999999998898 7899999999999999999
Q ss_pred HhCCc------EEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHH-HCCCCHHHHHHHHhhcCCCC
Q 022909 223 IMGKS------RFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLE-FVDFLINTVTMFLQSFSFGN 282 (290)
Q Consensus 223 ~~G~~------~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~-~~G~~~~~~~~~i~~~~~gs 282 (290)
.++.+ +.++|+.|+++++|++.|.+...+ .+++|++.+++ +.|++++++.+++..|..|+
T Consensus 158 ~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~ 225 (470)
T PTZ00142 158 KCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGI 225 (470)
T ss_pred HHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCC
Confidence 99987 789999999999999999998777 99999999997 79999999999997666654
No 15
>PLN02858 fructose-bisphosphate aldolase
Probab=99.97 E-value=3.9e-29 Score=256.25 Aligned_cols=219 Identities=25% Similarity=0.347 Sum_probs=203.4
Q ss_pred CCCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 70 ~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+.++|||||+|+||..+|++|...|++|.+|||++++.+.+.+.|....++..++++++|+|++++|.+.+++.+++++.
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~ 402 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL 402 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence 35889999999999999999999999999999999888888888877788999999999999999999999999986655
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHH--cCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCc
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKA--TGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS 227 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~ 227 (290)
.+++.+++|.++||+|+..+...+++.+.+.+ ++++|+++|+++++..+..+.+.++++|+++.+++++++|+.+|..
T Consensus 403 g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~ 482 (1378)
T PLN02858 403 GAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEK 482 (1378)
T ss_pred hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCc
Confidence 67788999999999999999999999999998 8999999999999999999999999999999999999999999998
Q ss_pred EEE-eCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccCC
Q 022909 228 RFY-LGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDGN 288 (290)
Q Consensus 228 ~~~-~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~~ 288 (290)
+++ .++.|.+..+|+++|++.+.+ .+++|++.++++.|+|++++.+++..+.+.||.+.++
T Consensus 483 i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~ 545 (1378)
T PLN02858 483 LYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENR 545 (1378)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhc
Confidence 887 467999999999999998887 9999999999999999999999999999999987654
No 16
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.97 E-value=1.4e-30 Score=230.93 Aligned_cols=174 Identities=13% Similarity=0.136 Sum_probs=146.1
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCccc---ccccccccccCCCccccCCCCeEEEEc
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPL---SFKVFSSQATGVSAEADELPGRIGFLG 78 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~IgiiG 78 (290)
.+...|+|... +++|++++++|++.|+++.+++.+++|.|.....+.. ..+.+. +++|||||
T Consensus 88 ~v~n~~g~~~~--~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~-------------gktvGIiG 152 (311)
T PRK08410 88 AVKNVAGYSTE--SVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIK-------------GKKWGIIG 152 (311)
T ss_pred EEEcCCCCCCh--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccC-------------CCEEEEEC
Confidence 44555787777 8889999999999999999999999999975432211 012344 89999999
Q ss_pred ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCC
Q 022909 79 MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPG 158 (290)
Q Consensus 79 ~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~ 158 (290)
+|+||+.+|++++.||++|++|||+.... +.+.. ..++++++++||+|++|+|.+++|++++ +++.++.||++
T Consensus 153 ~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li--~~~~~~~Mk~~ 225 (311)
T PRK08410 153 LGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLI--AYKELKLLKDG 225 (311)
T ss_pred CCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhccc--CHHHHHhCCCC
Confidence 99999999999999999999999975321 12333 3489999999999999999999999999 88999999999
Q ss_pred CEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccc
Q 022909 159 KGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 198 (290)
Q Consensus 159 ~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~ 198 (290)
++|||++||..+|+++|.++|+++.+. ...+++..||..
T Consensus 226 a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~ 264 (311)
T PRK08410 226 AILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPME 264 (311)
T ss_pred eEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCC
Confidence 999999999999999999999999888 777888777643
No 17
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=99.97 E-value=1.9e-30 Score=230.80 Aligned_cols=177 Identities=11% Similarity=0.058 Sum_probs=148.0
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|+++|+++.+++.+++|.|.......+..+++. ++++||||+|+
T Consensus 91 ~V~n~~~~~~~--~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~-------------gktvGIiG~G~ 155 (323)
T PRK15409 91 LLMHTPTVLTE--TVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVH-------------HKTLGIVGMGR 155 (323)
T ss_pred EEEeCCCCCch--HHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCC-------------CCEEEEEcccH
Confidence 45555777777 8999999999999999999999999999974321111114455 89999999999
Q ss_pred hHHHHHHHHH-HCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCE
Q 022909 82 MGTPMAQNLL-KAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG 160 (290)
Q Consensus 82 iG~~la~~l~-~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 160 (290)
||+.+|+++. .+|++|.+|||+... +.....++.. .++++++++||+|++|+|.+++|++++ +++.++.||++++
T Consensus 156 IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li--~~~~l~~mk~ga~ 231 (323)
T PRK15409 156 IGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLF--GAEQFAKMKSSAI 231 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhcc--CHHHHhcCCCCeE
Confidence 9999999998 999999999987532 2223345554 489999999999999999999999999 8889999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 161 lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
+||++||..+++++|.++|+++.+.....+++..|+.
T Consensus 232 lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~ 268 (323)
T PRK15409 232 FINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPL 268 (323)
T ss_pred EEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCC
Confidence 9999999999999999999999888777777776654
No 18
>PLN03139 formate dehydrogenase; Provisional
Probab=99.96 E-value=8e-30 Score=230.21 Aligned_cols=179 Identities=13% Similarity=0.088 Sum_probs=151.2
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|++.|++..+++.+++|.|...... ...+.+. +++|||||+|+
T Consensus 146 ~V~n~~g~na~--sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~-~~~~~L~-------------gktVGIVG~G~ 209 (386)
T PLN03139 146 TVAEVTGSNVV--SVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIA-YRAYDLE-------------GKTVGTVGAGR 209 (386)
T ss_pred EEEECCCcCcH--HHHHHHHHHHHHHHcCcHHHHHHHHhCCCcccccc-CCCcCCC-------------CCEEEEEeecH
Confidence 34444555554 89999999999999999999999999999743211 1113455 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|++++.+|++|.+||+++...+...+.|+...+++++++++||+|++++|.+++|++++ +++.++.||+|++|
T Consensus 210 IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~l 287 (386)
T PLN03139 210 IGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMF--NKERIAKMKKGVLI 287 (386)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHh--CHHHHhhCCCCeEE
Confidence 9999999999999999999998654444445667667799999999999999999999999999 78899999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 198 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~ 198 (290)
||++|+.++++++|.++|+++.+.....+++..+|..
T Consensus 288 IN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp 324 (386)
T PLN03139 288 VNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAP 324 (386)
T ss_pred EECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCC
Confidence 9999999999999999999999987777888777654
No 19
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.96 E-value=4.8e-28 Score=214.31 Aligned_cols=210 Identities=21% Similarity=0.273 Sum_probs=186.2
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHh---hcCCeEEEEeCChhHHHHHhccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA---ASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~---~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
|+|||||+|.||..+++.|.+.|++|.+|||++++.+.+.+.+.....+++++. +++|+|++++|.. .++.++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~--- 76 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL--- 76 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH---
Confidence 479999999999999999999999999999999998888887776666776654 4589999999987 888888
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC--
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK-- 226 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~-- 226 (290)
+++.+.++++.++||++++.+.+..++.+.+.+++++|+++|+++++.....+ +.++++|++++++.++++|+.++.
T Consensus 77 ~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~ 155 (298)
T TIGR00872 77 EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEE 155 (298)
T ss_pred HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcC
Confidence 45677889999999999999999999999999999999999999998888777 478999999999999999999986
Q ss_pred -cEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHC--CCCHHHHHHHHhhcC-CCCcccc
Q 022909 227 -SRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFV--DFLINTVTMFLQSFS-FGNLQYD 286 (290)
Q Consensus 227 -~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~--G~~~~~~~~~i~~~~-~gs~~~~ 286 (290)
.++++++.|.+..+|++.|.+...+ .+++|++.++++. |+|++++.++.+... .+|+.+.
T Consensus 156 ~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~ 220 (298)
T TIGR00872 156 QGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLD 220 (298)
T ss_pred CCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHH
Confidence 5789999999999999999998777 9999999999998 569999999988875 4666543
No 20
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.96 E-value=2.5e-28 Score=226.53 Aligned_cols=209 Identities=20% Similarity=0.262 Sum_probs=185.3
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-----CCccCCCHHHHhh---cCCeEEEEeCChhHHHHH
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAA---SCDVTFAMLADPESAMDV 144 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~---~aDivv~~~p~~~~~~~~ 144 (290)
.|||||+|.||..+|++|...|++|.+|||++++.+.+.+. ++..+.+++++++ ++|+|++++|....+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 38999999999999999999999999999999988887764 2455677888764 689999999998889998
Q ss_pred hcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHh
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIM 224 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~ 224 (290)
+ +++.+.+++|.++||+++..+.++....+.+.+++++|+++|+++++..+..++ ++++||+++++++++++|+.+
T Consensus 81 i---~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~i 156 (467)
T TIGR00873 81 I---NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKI 156 (467)
T ss_pred H---HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHH
Confidence 8 457788999999999999999999999999999999999999999999988888 789999999999999999999
Q ss_pred CCc------EEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHH-HCCCCHHHHHHHHh---hcCCCCccc
Q 022909 225 GKS------RFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLE-FVDFLINTVTMFLQ---SFSFGNLQY 285 (290)
Q Consensus 225 G~~------~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~-~~G~~~~~~~~~i~---~~~~gs~~~ 285 (290)
+.+ +.++|+.|+++++|++.|.+...+ .+++|++.+++ +.|++++++.+++. +...+||.+
T Consensus 157 a~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~ 228 (467)
T TIGR00873 157 AAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLI 228 (467)
T ss_pred hhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHH
Confidence 876 478999999999999999997777 99999999885 79999999999995 444555543
No 21
>PRK07574 formate dehydrogenase; Provisional
Probab=99.96 E-value=1.3e-29 Score=229.03 Aligned_cols=178 Identities=13% Similarity=0.089 Sum_probs=149.0
Q ss_pred eeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhH
Q 022909 4 LVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMG 83 (290)
Q Consensus 4 ~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG 83 (290)
++|..+++ ..+++|++++++|++.|++..+++.+++|.|......... +.+. +++|||||+|+||
T Consensus 140 V~n~~g~~-a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~-~~L~-------------gktVGIvG~G~IG 204 (385)
T PRK07574 140 VAEVTGSN-SISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRS-YDLE-------------GMTVGIVGAGRIG 204 (385)
T ss_pred EEcCCCCc-hHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccc-eecC-------------CCEEEEECCCHHH
Confidence 45554443 2489999999999999999999999999999753211111 3444 8999999999999
Q ss_pred HHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEE
Q 022909 84 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD 163 (290)
Q Consensus 84 ~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin 163 (290)
+.+|++|+.+|++|.+|||++...+...+.++....++++++++||+|++|+|.+++|++++ +++.++.||+|++|||
T Consensus 205 ~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~lIN 282 (385)
T PRK07574 205 LAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLF--DADVLSRMKRGSYLVN 282 (385)
T ss_pred HHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHh--CHHHHhcCCCCcEEEE
Confidence 99999999999999999998744333344566666789999999999999999999999999 8899999999999999
Q ss_pred ecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccc
Q 022909 164 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 198 (290)
Q Consensus 164 ~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~ 198 (290)
++|+.++++++|.++|+++.+.....+++..++..
T Consensus 283 ~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp 317 (385)
T PRK07574 283 TARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAP 317 (385)
T ss_pred CCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCC
Confidence 99999999999999999998887777777766543
No 22
>PRK06487 glycerate dehydrogenase; Provisional
Probab=99.96 E-value=1.4e-29 Score=225.06 Aligned_cols=172 Identities=15% Similarity=0.155 Sum_probs=144.9
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCccc---ccccccccccCCCccccCCCCeEEEEc
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPL---SFKVFSSQATGVSAEADELPGRIGFLG 78 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~IgiiG 78 (290)
.+...|+|... +++|++++++|++.|+++.+++.+++|.|.....+.. ..+++. +++|||||
T Consensus 91 ~v~n~~g~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~-------------gktvgIiG 155 (317)
T PRK06487 91 TVCNCQGYGTP--SVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELE-------------GKTLGLLG 155 (317)
T ss_pred EEEeCCCCCcc--hHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccC-------------CCEEEEEC
Confidence 44455777766 8999999999999999999999999999975432211 112344 89999999
Q ss_pred ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCC
Q 022909 79 MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPG 158 (290)
Q Consensus 79 ~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~ 158 (290)
+|+||+.+|++++.||++|++|++.... . ... ..++++++++||+|++|+|.+++|++++ +++.++.||+|
T Consensus 156 ~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~-----~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li--~~~~~~~mk~g 226 (317)
T PRK06487 156 HGELGGAVARLAEAFGMRVLIGQLPGRP-A-----RPD-RLPLDELLPQVDALTLHCPLTEHTRHLI--GARELALMKPG 226 (317)
T ss_pred CCHHHHHHHHHHhhCCCEEEEECCCCCc-c-----ccc-ccCHHHHHHhCCEEEECCCCChHHhcCc--CHHHHhcCCCC
Confidence 9999999999999999999999986431 1 122 2489999999999999999999999999 88999999999
Q ss_pred CEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 159 KGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 159 ~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
++|||++||..+++++|.++|+++.+.....+++..||.
T Consensus 227 a~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~ 265 (317)
T PRK06487 227 ALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPP 265 (317)
T ss_pred eEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCC
Confidence 999999999999999999999999888777788877654
No 23
>PRK06932 glycerate dehydrogenase; Provisional
Probab=99.96 E-value=2e-29 Score=223.76 Aligned_cols=173 Identities=12% Similarity=0.102 Sum_probs=144.6
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCccc---ccccccccccCCCccccCCCCeEEEEc
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPL---SFKVFSSQATGVSAEADELPGRIGFLG 78 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~IgiiG 78 (290)
.+.+.|+|... +++|++++++|++.|+++.+++.+++|.|.....+.. ..+++. +++|||||
T Consensus 90 ~v~n~~g~~~~--~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~-------------gktvgIiG 154 (314)
T PRK06932 90 AVKNVTGYSST--TVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVR-------------GSTLGVFG 154 (314)
T ss_pred EEEeCCCCChh--HHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccC-------------CCEEEEEC
Confidence 34455777776 8889999999999999999999999999975322111 112344 89999999
Q ss_pred ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCC
Q 022909 79 MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPG 158 (290)
Q Consensus 79 ~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~ 158 (290)
+|+||+.+|++++.||++|++|+++... .. .. ...++++++++||+|++|+|.+++|++++ +++.++.||+|
T Consensus 155 ~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li--~~~~l~~mk~g 226 (314)
T PRK06932 155 KGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLI--NAETLALMKPT 226 (314)
T ss_pred CCHHHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhccc--CHHHHHhCCCC
Confidence 9999999999999999999999986431 11 11 13589999999999999999999999999 88999999999
Q ss_pred CEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 159 KGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 159 ~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
+++||++||..+++++|.++|+++.+.....+++..||.
T Consensus 227 a~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 227 AFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred eEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 999999999999999999999999888777788877664
No 24
>PLN02306 hydroxypyruvate reductase
Probab=99.96 E-value=6.8e-29 Score=224.88 Aligned_cols=179 Identities=12% Similarity=0.041 Sum_probs=145.7
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+..+|+|... +++|++++++|++.|+++.+++.+++|.|..+.......+.+. +++|||||+|+
T Consensus 111 ~V~n~pg~~~~--~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~-------------gktvGIiG~G~ 175 (386)
T PLN02306 111 AVGNTPGVLTE--TTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLK-------------GQTVGVIGAGR 175 (386)
T ss_pred EEEECCCcCHH--HHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCC-------------CCEEEEECCCH
Confidence 45556777776 8899999999999999999999999999964322111113444 89999999999
Q ss_pred hHHHHHHHHH-HCCCeEEEEeCCccch-hhH-HhCC------------CccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 82 MGTPMAQNLL-KAGCDVTVWNRTKSKC-DPL-ISLG------------AKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 82 iG~~la~~l~-~~g~~V~~~d~~~~~~-~~~-~~~g------------~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
||+.+|+++. .||++|.+||++++.. ... ...+ .....++++++++||+|++|+|.+++|++++
T Consensus 176 IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~li- 254 (386)
T PLN02306 176 IGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLI- 254 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhc-
Confidence 9999999985 9999999999986421 111 1111 1234589999999999999999999999999
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
+++.++.||+|++|||++||..+++++|.++|+++.+.....+++..|+.
T Consensus 255 -n~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~ 304 (386)
T PLN02306 255 -NKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPY 304 (386)
T ss_pred -CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCC
Confidence 88999999999999999999999999999999998887777778776653
No 25
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.96 E-value=1.7e-28 Score=198.54 Aligned_cols=161 Identities=38% Similarity=0.670 Sum_probs=143.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 151 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~ 151 (290)
++|||||+|.||..+|++|.+.|++|.+|||++++.+++.+.|+..++++.|+++++|+|++++|.+++++.++.+.. +
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~-i 80 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN-I 80 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-H
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-H
Confidence 789999999999999999999999999999999999999988999999999999999999999999999999986544 8
Q ss_pred cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEe
Q 022909 152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231 (290)
Q Consensus 152 ~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~ 231 (290)
++.+++|.++||+|+.++...+++.+.+.+++++|+++|++++++.+..+.++++++|+++++++++++|+.+|.+++++
T Consensus 81 ~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~~~ 160 (163)
T PF03446_consen 81 LAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVYHY 160 (163)
T ss_dssp GGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEEEE
T ss_pred hhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCceee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999988844
Q ss_pred -CC
Q 022909 232 -GD 233 (290)
Q Consensus 232 -~~ 233 (290)
|+
T Consensus 161 ~G~ 163 (163)
T PF03446_consen 161 VGP 163 (163)
T ss_dssp -ES
T ss_pred eCc
Confidence 53
No 26
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.95 E-value=2.9e-29 Score=205.85 Aligned_cols=160 Identities=16% Similarity=0.192 Sum_probs=130.6
Q ss_pred chhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhHHHHHHHHHHCCCeEEEE
Q 022909 21 MSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVW 100 (290)
Q Consensus 21 ~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~ 100 (290)
++++|++.|+++.+++.++++.|... .....+.+. +++|||||+|+||+.+|++++.+|++|++|
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~--~~~~~~~l~-------------g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~ 65 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASR--ERFPGRELR-------------GKTVGIIGYGRIGRAVARRLKAFGMRVIGY 65 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHH--TTTTBS-ST-------------TSEEEEESTSHHHHHHHHHHHHTT-EEEEE
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCC--cCCCccccC-------------CCEEEEEEEcCCcCeEeeeeecCCceeEEe
Confidence 46777788999999999999999111 111114454 899999999999999999999999999999
Q ss_pred eCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHH
Q 022909 101 NRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 180 (290)
Q Consensus 101 d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~ 180 (290)
||+........+.+.. ..++++++++||+|++|+|.+++|++++ +++.++.||+|++|||++|+..+++++|.++|+
T Consensus 66 d~~~~~~~~~~~~~~~-~~~l~ell~~aDiv~~~~plt~~T~~li--~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 66 DRSPKPEEGADEFGVE-YVSLDELLAQADIVSLHLPLTPETRGLI--NAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp ESSCHHHHHHHHTTEE-ESSHHHHHHH-SEEEE-SSSSTTTTTSB--SHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred cccCChhhhcccccce-eeehhhhcchhhhhhhhhccccccceee--eeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 9998765434555554 4599999999999999999999999999 889999999999999999999999999999999
Q ss_pred HcCCcEEeCccCCCCccc
Q 022909 181 ATGASFLEAPVSGSKKPA 198 (290)
Q Consensus 181 ~~~~~~~~~p~~~~~~~~ 198 (290)
++.+.....+++..|+..
T Consensus 143 ~g~i~ga~lDV~~~EP~~ 160 (178)
T PF02826_consen 143 SGKIAGAALDVFEPEPLP 160 (178)
T ss_dssp TTSEEEEEESS-SSSSSS
T ss_pred hccCceEEEECCCCCCCC
Confidence 998887777777776543
No 27
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.95 E-value=1.1e-28 Score=226.20 Aligned_cols=172 Identities=13% Similarity=0.069 Sum_probs=146.3
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|++++++|++.|+++.+++.+++|.|.+... ..+++. +++|||||+|+
T Consensus 100 ~V~n~pg~~~~--aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~---~~~~L~-------------gktvGIiG~G~ 161 (409)
T PRK11790 100 PVFNAPFSNTR--SVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAA---GSFEVR-------------GKTLGIVGYGH 161 (409)
T ss_pred EEEeCCCCChH--HHHHHHHHHHHHHHcChHHHHHHHHcCccccccc---CcccCC-------------CCEEEEECCCH
Confidence 34455777777 8889999999999999999999999999975321 113455 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|+++..+|++|.+||+++... ..++....++++++++||+|++|+|.+++|++++ +++.++.||+|+++
T Consensus 162 IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li--~~~~l~~mk~ga~l 235 (409)
T PRK11790 162 IGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMI--GAEELALMKPGAIL 235 (409)
T ss_pred HHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhcc--CHHHHhcCCCCeEE
Confidence 99999999999999999999875321 1234456689999999999999999999999999 88899999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
||++||..+++++|.++|+++.+.....+++..++.
T Consensus 236 IN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~ 271 (409)
T PRK11790 236 INASRGTVVDIDALADALKSGHLAGAAIDVFPVEPK 271 (409)
T ss_pred EECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCC
Confidence 999999999999999999999888777777766653
No 28
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.95 E-value=2e-28 Score=219.19 Aligned_cols=177 Identities=13% Similarity=0.069 Sum_probs=147.1
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCC-c---ccccccccccccCCCccccCCCCeEEEE
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPL-F---PLSFKVFSSQATGVSAEADELPGRIGFL 77 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~-~---~l~~~~~~~~~~~~~~~~~~~~~~Igii 77 (290)
.+..+|+|... +++|++++++|++.|+++.+++.+++|.|..... . ....+++. +++||||
T Consensus 92 ~v~n~~g~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~-------------gktvgIi 156 (333)
T PRK13243 92 YVTNTPGVLTE--ATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVY-------------GKTIGII 156 (333)
T ss_pred EEEECCCCChH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCC-------------CCEEEEE
Confidence 34455777666 8899999999999999999999999999974311 0 00113444 8999999
Q ss_pred cccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCC
Q 022909 78 GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGP 157 (290)
Q Consensus 78 G~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~ 157 (290)
|+|+||+.+|+++..+|++|.+|||+++.. ...+.+... .++++++++||+|++|+|.+++|++++ +++.++.||+
T Consensus 157 G~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i--~~~~~~~mk~ 232 (333)
T PRK13243 157 GFGRIGQAVARRAKGFGMRILYYSRTRKPE-AEKELGAEY-RPLEELLRESDFVSLHVPLTKETYHMI--NEERLKLMKP 232 (333)
T ss_pred CcCHHHHHHHHHHHHCCCEEEEECCCCChh-hHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhhcc--CHHHHhcCCC
Confidence 999999999999999999999999986542 223344544 489999999999999999999999999 7789999999
Q ss_pred CCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 158 GKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 158 ~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
|+++||+||+.++++++|.++|+++.+.....+++..|+.
T Consensus 233 ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~ 272 (333)
T PRK13243 233 TAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPY 272 (333)
T ss_pred CeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCC
Confidence 9999999999999999999999999888777778777654
No 29
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.95 E-value=2.1e-28 Score=215.44 Aligned_cols=167 Identities=13% Similarity=0.168 Sum_probs=142.3
Q ss_pred eeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHh
Q 022909 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (290)
Q Consensus 3 ~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~i 82 (290)
+++|+++.. .+++|++++++|++.|+++.+.+.+++|.|..... +.+. +++|||||+|+|
T Consensus 74 ~~~~~g~~~--~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~~-----~~L~-------------gktvgIiG~G~I 133 (303)
T PRK06436 74 LCSNAGAYS--ISVAEHAFALLLAWAKNICENNYNMKNGNFKQSPT-----KLLY-------------NKSLGILGYGGI 133 (303)
T ss_pred EEEcCCCCc--HHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCCCC-----CCCC-------------CCEEEEECcCHH
Confidence 455654333 49999999999999999999999999999985322 3444 899999999999
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-cCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
|+.+|++++.+|++|++|||+... .+.. ...++++++++||+|++|+|.+++|++++ +++.++.||+|+++
T Consensus 134 G~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li--~~~~l~~mk~ga~l 205 (303)
T PRK06436 134 GRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMI--NSKMLSLFRKGLAI 205 (303)
T ss_pred HHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCc--CHHHHhcCCCCeEE
Confidence 999999999999999999997532 1222 24589999999999999999999999999 78899999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
||+||+.++++++|.++|+++.+.....+++..||.
T Consensus 206 IN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~ 241 (303)
T PRK06436 206 INVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPI 241 (303)
T ss_pred EECCCccccCHHHHHHHHHcCCceEEEEccCCCCCC
Confidence 999999999999999999998787766777776653
No 30
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=99.95 E-value=1.3e-28 Score=211.06 Aligned_cols=176 Identities=13% Similarity=0.123 Sum_probs=155.1
Q ss_pred CeeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEccc
Q 022909 1 MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMG 80 (290)
Q Consensus 1 ~~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G 80 (290)
++++..|.|++. |++|++++|+++++|++++....+++|.|.+.... + .++. +|++||+|+|
T Consensus 94 i~Vvn~P~~Ns~--saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~--G-~el~-------------GKTLgvlG~G 155 (406)
T KOG0068|consen 94 ILVVNTPTANSR--SAAELTIGLILSLARQIGQASASMKEGKWNRVKYL--G-WELR-------------GKTLGVLGLG 155 (406)
T ss_pred eEEEeCCCCChH--HHHHHHHHHHHHHhhhcchhheeeecCceeeccee--e-eEEe-------------ccEEEEeecc
Confidence 467788999998 99999999999999999999999999999865322 2 4566 8999999999
Q ss_pred HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCE
Q 022909 81 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG 160 (290)
Q Consensus 81 ~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 160 (290)
+||+.+|+++..+|++|+.||+-.. .+.....|++.. +++|++..+|+|.+|+|.+++|++++ +++.+..||+|..
T Consensus 156 rIGseVA~r~k~~gm~vI~~dpi~~-~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~li--n~~tfA~mKkGVr 231 (406)
T KOG0068|consen 156 RIGSEVAVRAKAMGMHVIGYDPITP-MALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLL--NDETFAKMKKGVR 231 (406)
T ss_pred cchHHHHHHHHhcCceEEeecCCCc-hHHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhcc--CHHHHHHhhCCcE
Confidence 9999999999999999999998653 345566788876 89999999999999999999999999 8889999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccc
Q 022909 161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 198 (290)
Q Consensus 161 lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~ 198 (290)
+||++||+++|+.+|.++++++.+.-...+++..|+..
T Consensus 232 iIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~ 269 (406)
T KOG0068|consen 232 IINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPK 269 (406)
T ss_pred EEEecCCceechHHHHHHHhcCcccceeeecccCCCCc
Confidence 99999999999999999999987776666777766654
No 31
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.95 E-value=4.1e-28 Score=214.84 Aligned_cols=163 Identities=13% Similarity=0.133 Sum_probs=139.5
Q ss_pred cccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhHHHHHHHHHH
Q 022909 13 FLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLK 92 (290)
Q Consensus 13 ~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG~~la~~l~~ 92 (290)
..+++|++++++|++.|+++.+.+.++++.|...... .+. ++||||||+|+||+.+|++|.+
T Consensus 96 ~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~-----~l~-------------g~tvgIvG~G~IG~~vA~~l~a 157 (312)
T PRK15469 96 GEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEY-----HRE-------------DFTIGILGAGVLGSKVAQSLQT 157 (312)
T ss_pred cHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCC-----CcC-------------CCEEEEECCCHHHHHHHHHHHH
Confidence 3488999999999999999999999999999743222 333 8999999999999999999999
Q ss_pred CCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHH
Q 022909 93 AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS 172 (290)
Q Consensus 93 ~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~ 172 (290)
+|++|.+||+++++...... .....++++++++||+|++++|.+++|++++ +++.++.||+|+++||++||..+++
T Consensus 158 fG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde 233 (312)
T PRK15469 158 WGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGII--NQQLLEQLPDGAYLLNLARGVHVVE 233 (312)
T ss_pred CCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHh--HHHHHhcCCCCcEEEECCCccccCH
Confidence 99999999997654322111 1224589999999999999999999999999 7889999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 173 KLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 173 ~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
++|.++|+++.+.....+++..|+.
T Consensus 234 ~aL~~aL~~g~i~gaalDVf~~EPl 258 (312)
T PRK15469 234 DDLLAALDSGKVKGAMLDVFSREPL 258 (312)
T ss_pred HHHHHHHhcCCeeeEEecCCCCCCC
Confidence 9999999999888777788776654
No 32
>PLN02928 oxidoreductase family protein
Probab=99.95 E-value=5.4e-28 Score=217.22 Aligned_cols=174 Identities=13% Similarity=0.032 Sum_probs=144.2
Q ss_pred eeeeccccc-ccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 3 LLVKSSYSH-RFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 3 ~~~~~~y~~-~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
+...|+|++ ...+++|++++++|++.|+++.+.+.+++|.|.... . +.+. +++|||||+|+
T Consensus 108 v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~----~-~~l~-------------gktvGIiG~G~ 169 (347)
T PLN02928 108 VARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPI----G-DTLF-------------GKTVFILGYGA 169 (347)
T ss_pred EEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccccc----c-cCCC-------------CCEEEEECCCH
Confidence 334455543 556899999999999999999999999999996421 1 3444 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhH------------HhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPL------------ISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~------------~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
||+.+|++++.+|++|++|||+..+.... ..... ...++++++++||+|++|+|.+++|++++ ++
T Consensus 170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~li--~~ 246 (347)
T PLN02928 170 IGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKETAGIV--ND 246 (347)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCChHhhccc--CH
Confidence 99999999999999999999974321111 00112 34589999999999999999999999999 88
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
+.++.||+|++|||++||..+++++|.++|+++.+.....+++..|+.
T Consensus 247 ~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~ 294 (347)
T PLN02928 247 EFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPF 294 (347)
T ss_pred HHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCC
Confidence 999999999999999999999999999999999888777788876664
No 33
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.95 E-value=3.9e-26 Score=211.09 Aligned_cols=197 Identities=22% Similarity=0.279 Sum_probs=180.4
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-----CCccCCCHHHHhhc---CCeEEEEeCChhHHHHHhcccccccc
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAAS---CDVTFAMLADPESAMDVACGKHGAAS 153 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~~---aDivv~~~p~~~~~~~~~~~~~~~~~ 153 (290)
||+.+|++|...|++|.+|||++++.+.+.+. ++..+.+++++++. +|+|++++|..+.++.++ .++++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi---~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI---EQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH---HHHHh
Confidence 79999999999999999999999998888763 47788899999875 899999999999999998 45788
Q ss_pred cCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCcE-----
Q 022909 154 GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR----- 228 (290)
Q Consensus 154 ~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~----- 228 (290)
.+.+|.++||.++..+.++.+..+.++++|++|+++|+++++..+..++ ++++||+++++++++++|+.++.++
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~ 156 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGEP 156 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCC
Confidence 8999999999999999999999999999999999999999999998998 7899999999999999999999876
Q ss_pred --EEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHH-HCCCCHHHHHHHHhhcCCCC
Q 022909 229 --FYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLE-FVDFLINTVTMFLQSFSFGN 282 (290)
Q Consensus 229 --~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~-~~G~~~~~~~~~i~~~~~gs 282 (290)
.++|+.|+++++|++.|.+...+ .+++|++.+++ +.|++++++.+++..|..|+
T Consensus 157 c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~ 214 (459)
T PRK09287 157 CVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGE 214 (459)
T ss_pred ceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCC
Confidence 89999999999999999998777 99999999999 58999999999996554443
No 34
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.95 E-value=1.1e-27 Score=226.33 Aligned_cols=174 Identities=13% Similarity=0.115 Sum_probs=148.0
Q ss_pred eeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHh
Q 022909 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (290)
Q Consensus 3 ~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~i 82 (290)
+...|+|... +++|++++++|+++|+++.+++.+++|.|.+... .. +++. +++|||||+|+|
T Consensus 88 V~n~pg~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~--~g-~~l~-------------gktvgIiG~G~I 149 (525)
T TIGR01327 88 VVNAPTGNTI--SAAEHALAMLLAAARNIPQADASLKEGEWDRKAF--MG-TELY-------------GKTLGVIGLGRI 149 (525)
T ss_pred EEeCCCcChH--HHHHHHHHHHHHHhcCHHHHHHHHHcCCcccccc--Cc-cccC-------------CCEEEEECCCHH
Confidence 4444666665 8999999999999999999999999999974321 11 3455 899999999999
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li 162 (290)
|+.+|++++.+|++|.+||++... +...+.++...+++++++++||+|++|+|.+++|++++ +++.++.||+++++|
T Consensus 150 G~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~lI 226 (525)
T TIGR01327 150 GSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLI--GAEELAKMKKGVIIV 226 (525)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCc--CHHHHhcCCCCeEEE
Confidence 999999999999999999986432 33344566666789999999999999999999999999 788999999999999
Q ss_pred EecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 163 n~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
|++|+..+++++|.++|+++.+.....+++..||.
T Consensus 227 N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~ 261 (525)
T TIGR01327 227 NCARGGIIDEAALYEALEEGHVRAAALDVFEKEPP 261 (525)
T ss_pred EcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCC
Confidence 99999999999999999999888777777776653
No 35
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.94 E-value=1.7e-27 Score=212.63 Aligned_cols=172 Identities=12% Similarity=0.110 Sum_probs=146.2
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|++. +++|++++++|++.|+++.+++.+++|.|.+... ...+.+. +++|||||+|+
T Consensus 94 ~v~n~~~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~--~~~~~l~-------------g~~VgIIG~G~ 156 (330)
T PRK12480 94 VISNVPSYSPE--TIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAE--IMSKPVK-------------NMTVAIIGTGR 156 (330)
T ss_pred EEEeCCCCChH--HHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccc--cCccccC-------------CCEEEEECCCH
Confidence 45556889888 8888999999999999999999999997742211 1113444 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEE
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 161 (290)
||+.+|++|+.+|++|.+||++++..... .....++++++++||+|++|+|.++++++++ +++.++.|++|+++
T Consensus 157 IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li--~~~~l~~mk~gavl 230 (330)
T PRK12480 157 IGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLF--DKAMFDHVKKGAIL 230 (330)
T ss_pred HHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHH--hHHHHhcCCCCcEE
Confidence 99999999999999999999987543221 3345689999999999999999999999999 78899999999999
Q ss_pred EEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 162 in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
||++||..+++++|.++|+++.+.....+++..|+
T Consensus 231 IN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP 265 (330)
T PRK12480 231 VNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEA 265 (330)
T ss_pred EEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCC
Confidence 99999999999999999999988888888887776
No 36
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.94 E-value=4.3e-27 Score=222.42 Aligned_cols=173 Identities=14% Similarity=0.169 Sum_probs=147.0
Q ss_pred eeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHh
Q 022909 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (290)
Q Consensus 3 ~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~i 82 (290)
+...|+|... +++|++++++|+++|+++.+++.+++|.|..... .. +.+. +++|||||+|+|
T Consensus 90 V~n~p~~~~~--~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~--~g-~~l~-------------gktvgIiG~G~I 151 (526)
T PRK13581 90 VVNAPTGNTI--SAAEHTIALMLALARNIPQAHASLKAGKWERKKF--MG-VELY-------------GKTLGIIGLGRI 151 (526)
T ss_pred EEeCCCCChH--HHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCc--cc-cccC-------------CCEEEEECCCHH
Confidence 3344666665 8999999999999999999999999999975321 11 3455 899999999999
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li 162 (290)
|+.+|++++.+|++|.+|||+... +...+.++... ++++++++||+|++|+|.+++|++++ +++.++.||+++++|
T Consensus 152 G~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li--~~~~l~~mk~ga~lI 227 (526)
T PRK13581 152 GSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLI--GAEELAKMKPGVRII 227 (526)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCc--CHHHHhcCCCCeEEE
Confidence 999999999999999999997532 33344566666 89999999999999999999999999 788999999999999
Q ss_pred EecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 163 n~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
|++|+.++++++|.++|+++.+.....+++..||.
T Consensus 228 N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~ 262 (526)
T PRK13581 228 NCARGGIIDEAALAEALKSGKVAGAALDVFEKEPP 262 (526)
T ss_pred ECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCC
Confidence 99999999999999999999887777777776653
No 37
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=99.94 E-value=1.5e-26 Score=202.62 Aligned_cols=166 Identities=15% Similarity=0.102 Sum_probs=145.2
Q ss_pred ccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhHHHHHHHHHHC
Q 022909 14 LSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKA 93 (290)
Q Consensus 14 ~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG~~la~~l~~~ 93 (290)
.++|+++++++|.+.|++..+++++++|.|.....+.+. ..+. ++||||+|+|+||+.+|++|.+|
T Consensus 119 ~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g-~~~~-------------gK~vgilG~G~IG~~ia~rL~~F 184 (336)
T KOG0069|consen 119 DDVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLG-YDLE-------------GKTVGILGLGRIGKAIAKRLKPF 184 (336)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCcccc-cccc-------------CCEEEEecCcHHHHHHHHhhhhc
Confidence 488999999999999999999999999999433333333 3333 89999999999999999999999
Q ss_pred CCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHH
Q 022909 94 GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSK 173 (290)
Q Consensus 94 g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~ 173 (290)
|+.+.+++|++...+...+.+.. ..+.++++.++|+|++|+|.+++|++++ +++.+.+||++.++||++||...+++
T Consensus 185 g~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~li--Nk~~~~~mk~g~vlVN~aRG~iide~ 261 (336)
T KOG0069|consen 185 GCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLI--NKKFIEKMKDGAVLVNTARGAIIDEE 261 (336)
T ss_pred cceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHh--hHHHHHhcCCCeEEEeccccccccHH
Confidence 98888888988776666665555 4589999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEeCccCCCCc
Q 022909 174 LINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 174 ~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
++.++|+++.+.-.+-+++..++
T Consensus 262 ~l~eaL~sG~i~~aGlDVf~~EP 284 (336)
T KOG0069|consen 262 ALVEALKSGKIAGAGLDVFEPEP 284 (336)
T ss_pred HHHHHHhcCCcccccccccCCCC
Confidence 99999999988777777887776
No 38
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.93 E-value=6.3e-26 Score=203.11 Aligned_cols=173 Identities=10% Similarity=0.089 Sum_probs=144.4
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|+.. +++|++++++|++.|+++.+++.+++|.|.+... +..+++. +++|||||+|+
T Consensus 94 ~v~n~~~~~~~--~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~--~~~~~l~-------------g~~VgIIG~G~ 156 (332)
T PRK08605 94 IISNVPSYSPE--SIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPP--ILSRSIK-------------DLKVAVIGTGR 156 (332)
T ss_pred EEEeCCCCChH--HHHHHHHHHHHHHhcChHHHHHHHHhCCcccccc--cccceeC-------------CCEEEEECCCH
Confidence 44556788777 8999999999999999999999999998853221 1114555 89999999999
Q ss_pred hHHHHHHHH-HHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCE
Q 022909 82 MGTPMAQNL-LKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG 160 (290)
Q Consensus 82 iG~~la~~l-~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 160 (290)
||+.+|++| ..+|++|.+||+++... .. ..+....++++++++||+|++|+|.++.+++++ +++.++.|++|++
T Consensus 157 IG~~vA~~L~~~~g~~V~~~d~~~~~~--~~-~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li--~~~~l~~mk~gai 231 (332)
T PRK08605 157 IGLAVAKIFAKGYGSDVVAYDPFPNAK--AA-TYVDYKDTIEEAVEGADIVTLHMPATKYNHYLF--NADLFKHFKKGAV 231 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccHh--HH-hhccccCCHHHHHHhCCEEEEeCCCCcchhhhc--CHHHHhcCCCCcE
Confidence 999999999 67899999999986532 11 234455689999999999999999999999988 6778999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCc
Q 022909 161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (290)
Q Consensus 161 lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~ 196 (290)
+||+||+..+++++|.++|+++.+.....+++..|+
T Consensus 232 lIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep 267 (332)
T PRK08605 232 FVNCARGSLVDTKALLDALDNGLIKGAALDTYEFER 267 (332)
T ss_pred EEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCC
Confidence 999999999999999999999988877777777664
No 39
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=6.6e-24 Score=174.31 Aligned_cols=206 Identities=23% Similarity=0.333 Sum_probs=180.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhh---cCCeEEEEeCChhHHHHHhccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA---SCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~---~aDivv~~~p~~~~~~~~~~~~ 148 (290)
|+||+||+|+||..+.+++...|++|.+||++++..++++..++..+++++++++ ...+|.+.+|....|..++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi--- 77 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI--- 77 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH---
Confidence 5799999999999999999999999999999999999999988888889888876 4789999999988888888
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC--
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK-- 226 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~-- 226 (290)
+++.+.|.+|.++|+-++....|.....+.+.+++++|+++..+++......+. +++++|++++++.++++|+.+..
T Consensus 78 ~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ge 156 (300)
T COG1023 78 DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAPGE 156 (300)
T ss_pred HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCcCc
Confidence 678889999999999999999999999999999999999999999988776665 67999999999999999999854
Q ss_pred -cEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCC
Q 022909 227 -SRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGN 282 (290)
Q Consensus 227 -~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs 282 (290)
..-++++.|+++++|++.|.+...+ ++++|.+.+.++..+|.+ +.++..-|..||
T Consensus 157 ~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D-~~~VA~vW~hGS 213 (300)
T COG1023 157 DGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYD-LEAVAEVWNHGS 213 (300)
T ss_pred CccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHhCcc
Confidence 4568999999999999999997776 999999999998877654 444444444443
No 40
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.92 E-value=2.3e-23 Score=192.38 Aligned_cols=205 Identities=18% Similarity=0.132 Sum_probs=163.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-------------------CC-CccCCCHHHHhhcCCeE
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------LG-AKYQPSPDEVAASCDVT 131 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~aDiv 131 (290)
|+|+|||+|.||..+|..|+..|++|++||+++++.+.+.+ .| +...++.+++++++|+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 47999999999999999999999999999999887766543 12 45566788889999999
Q ss_pred EEEeCChhH---------HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc--CC------cEEeCccCCC
Q 022909 132 FAMLADPES---------AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GA------SFLEAPVSGS 194 (290)
Q Consensus 132 v~~~p~~~~---------~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~--~~------~~~~~p~~~~ 194 (290)
++++|.+.. +...+ +.+.+.+++++++|+.|+..+...+.+.+.+.+. +. .+..+|.+..
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~---~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~ 157 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAA---ETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR 157 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHH---HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCC
Confidence 999998643 44443 4456778999999999999999988887544332 22 2344554443
Q ss_pred Ccccc---CCceEEEecCCHHHHHHHHHHHHHhC-CcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHH
Q 022909 195 KKPAE---DGQLIFLAAGDKSLYNTVAPLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLIN 269 (290)
Q Consensus 195 ~~~~~---~~~~~~~~~~~~~~~~~v~~ll~~~G-~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~ 269 (290)
+.... ..+..+++|++++..+.++++++.++ ..++++++.+.++..|++.|.+.+.. ..++|+..+|++.|+|++
T Consensus 158 ~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~ 237 (411)
T TIGR03026 158 EGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVY 237 (411)
T ss_pred CCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 32221 12226778889999999999999998 57888999999999999999999888 999999999999999999
Q ss_pred HHHHHHhhcC
Q 022909 270 TVTMFLQSFS 279 (290)
Q Consensus 270 ~~~~~i~~~~ 279 (290)
++.+++....
T Consensus 238 ~v~~~~~~~~ 247 (411)
T TIGR03026 238 EVIEAAGTDP 247 (411)
T ss_pred HHHHHhCCCC
Confidence 9999998653
No 41
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.90 E-value=5.6e-22 Score=182.75 Aligned_cols=206 Identities=14% Similarity=0.080 Sum_probs=161.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc-CCCHHHH---------------hhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-QPSPDEV---------------AASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-~~~~~~~---------------~~~aDivv~~ 134 (290)
.++|+|||+|.||..+|..|+..|++|++||+++++.+.+....... ...++++ ++++|+|++|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 38899999999999999999999999999999998887754322211 1233333 2379999999
Q ss_pred eCCh---------hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCC--------------cEEeCc-
Q 022909 135 LADP---------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA--------------SFLEAP- 190 (290)
Q Consensus 135 ~p~~---------~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~--------------~~~~~p- 190 (290)
+|.+ ..+...+ +.+.+.+++|+++|+.|+.++...+.+...+.+.+. .++.+|
T Consensus 83 vptp~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE 159 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAA---KSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPE 159 (415)
T ss_pred cCCCCCCCCCcChHHHHHHH---HHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCC
Confidence 9986 3444444 456778899999999999999999999887776432 245567
Q ss_pred -cCCCCccccCCceEEEecC-CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCC
Q 022909 191 -VSGSKKPAEDGQLIFLAAG-DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFL 267 (290)
Q Consensus 191 -~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~ 267 (290)
+..+........+..+++| +++..+.++++++.++..++++++.+.++..|++.|.+.+.. ..++|+..+|++.|+|
T Consensus 160 ~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD 239 (415)
T PRK11064 160 RVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGIN 239 (415)
T ss_pred ccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3333322222223344566 889999999999999988888999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHhhcC
Q 022909 268 INTVTMFLQSFS 279 (290)
Q Consensus 268 ~~~~~~~i~~~~ 279 (290)
++++.+++..-.
T Consensus 240 ~~~v~~~~~~~~ 251 (415)
T PRK11064 240 VWELIRLANRHP 251 (415)
T ss_pred HHHHHHHhccCC
Confidence 999999987543
No 42
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=99.90 E-value=1.2e-23 Score=189.56 Aligned_cols=152 Identities=11% Similarity=0.085 Sum_probs=123.7
Q ss_pred eeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHh
Q 022909 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (290)
Q Consensus 3 ~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~i 82 (290)
+...|+|... +++|+++++++.+.|+. | + .+. +++|||||+|+|
T Consensus 84 v~napg~na~--aVAE~~~~~lL~l~r~~---------g-------~-----~L~-------------gktvGIIG~G~I 127 (378)
T PRK15438 84 FSAAPGCNAI--AVVEYVFSSLLMLAERD---------G-------F-----SLH-------------DRTVGIVGVGNV 127 (378)
T ss_pred EEECCCcCch--HHHHHHHHHHHHHhccC---------C-------C-----CcC-------------CCEEEEECcCHH
Confidence 3444555555 88899999988888851 1 1 222 899999999999
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhH----HHHHhcccccccccCCCC
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPES----AMDVACGKHGAASGMGPG 158 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~----~~~~~~~~~~~~~~~~~~ 158 (290)
|+.+|+++.++|++|.+||+..... .... ...++++++++||+|++|+|.+++ |.+++ +++.++.||+|
T Consensus 128 G~~vA~~l~a~G~~V~~~dp~~~~~----~~~~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li--~~~~l~~mk~g 200 (378)
T PRK15438 128 GRRLQARLEALGIKTLLCDPPRADR----GDEG-DFRSLDELVQEADILTFHTPLFKDGPYKTLHLA--DEKLIRSLKPG 200 (378)
T ss_pred HHHHHHHHHHCCCEEEEECCccccc----cccc-ccCCHHHHHhhCCEEEEeCCCCCCccccccccc--CHHHHhcCCCC
Confidence 9999999999999999999754321 1111 245899999999999999999885 99999 88899999999
Q ss_pred CEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 159 KGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 159 ~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
+++||++||.++++++|.++|+++.+.....+++..||.
T Consensus 201 ailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~ 239 (378)
T PRK15438 201 AILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE 239 (378)
T ss_pred cEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence 999999999999999999999998877666677766653
No 43
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.89 E-value=1.7e-21 Score=179.64 Aligned_cols=206 Identities=15% Similarity=0.135 Sum_probs=160.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc----------------cCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK----------------YQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~----------------~~~~~~~~~~~aDivv~~ 134 (290)
.|+|||||+|.||..+|..|+. |++|++||+++++.+.+.+ |.. .+++..+.+++||++++|
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~-G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~ 83 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKN-GVDVNLETTEEELREARYLKFTSEIEKIKECNFYIIT 83 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHC-cCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence 5899999999999999999877 6999999999999888773 221 223334568899999999
Q ss_pred eCCh------hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc--CCcEEe------CccCC--CCccc
Q 022909 135 LADP------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLE------APVSG--SKKPA 198 (290)
Q Consensus 135 ~p~~------~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~--~~~~~~------~p~~~--~~~~~ 198 (290)
+|++ .+++.++...+.+.+.+++|.++|+.|+..+..++++.+.+.+. |+.+.+ +|.+. +....
T Consensus 84 Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~ 163 (425)
T PRK15182 84 VPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKH 163 (425)
T ss_pred cCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccc
Confidence 9987 45566665556677889999999999999999998765544332 444332 33322 22221
Q ss_pred c-CCceEEEecCCHHHHHHHHHHHHHhC-CcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHH
Q 022909 199 E-DGQLIFLAAGDKSLYNTVAPLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFL 275 (290)
Q Consensus 199 ~-~~~~~~~~~~~~~~~~~v~~ll~~~G-~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i 275 (290)
. .....++.|.+++..+.++++++.+. ..++++++.+.|+..|+++|.+.+.. ..++|+..+|++.|+|.+++.+++
T Consensus 164 ~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~ 243 (425)
T PRK15182 164 RLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAA 243 (425)
T ss_pred cccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHh
Confidence 1 22334667777888889999999985 34678899999999999999999999 999999999999999999999996
Q ss_pred hhc
Q 022909 276 QSF 278 (290)
Q Consensus 276 ~~~ 278 (290)
..-
T Consensus 244 ~~~ 246 (425)
T PRK15182 244 GSK 246 (425)
T ss_pred cCC
Confidence 543
No 44
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.89 E-value=5.3e-23 Score=185.87 Aligned_cols=153 Identities=12% Similarity=0.112 Sum_probs=124.2
Q ss_pred eeeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccH
Q 022909 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (290)
Q Consensus 2 ~~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~ 81 (290)
.+...|+|... +++|+++++++++.|+. . +.+. +++|||||+|+
T Consensus 83 ~v~napg~na~--aVAE~v~~~lL~l~r~~------------g---------~~l~-------------gktvGIIG~G~ 126 (381)
T PRK00257 83 TWSSAPGCNAR--GVVDYVLGSLLTLAERE------------G---------VDLA-------------ERTYGVVGAGH 126 (381)
T ss_pred EEEECCCcChH--HHHHHHHHHHHHHhccc------------C---------CCcC-------------cCEEEEECCCH
Confidence 34445666666 78888888888877751 1 1233 89999999999
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChh----HHHHHhcccccccccCCC
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE----SAMDVACGKHGAASGMGP 157 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~----~~~~~~~~~~~~~~~~~~ 157 (290)
||+.+|+++.++|++|++||+..... + +.....++++++++||+|++|+|.++ .|++++ +++.+..||+
T Consensus 127 IG~~va~~l~a~G~~V~~~Dp~~~~~----~-~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li--~~~~l~~mk~ 199 (381)
T PRK00257 127 VGGRLVRVLRGLGWKVLVCDPPRQEA----E-GDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLL--DEAFLASLRP 199 (381)
T ss_pred HHHHHHHHHHHCCCEEEEECCccccc----c-cCccccCHHHHHhhCCEEEEeCcCCCCccccccccC--CHHHHhcCCC
Confidence 99999999999999999999864321 1 12234589999999999999999987 699999 8889999999
Q ss_pred CCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCcc
Q 022909 158 GKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (290)
Q Consensus 158 ~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~ 197 (290)
|+++||+|||.++++++|.++|+++.+.....+++..||.
T Consensus 200 gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~ 239 (381)
T PRK00257 200 GAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ 239 (381)
T ss_pred CeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC
Confidence 9999999999999999999999998777666667766553
No 45
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.88 E-value=2.6e-21 Score=172.25 Aligned_cols=204 Identities=11% Similarity=0.144 Sum_probs=156.0
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhH-----------HhCC-------------CccCCCHHHHhhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVAAS 127 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~ 127 (290)
++|+|||+|.||..+|..|+..|++|++||++++..+.. .+.| +..+.++.+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 689999999999999999999999999999998765542 2233 2466788889999
Q ss_pred CCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEe
Q 022909 128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA 207 (290)
Q Consensus 128 aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 207 (290)
+|+|+.++|...+.+..++ .++.+..+++.++ .. +.+.....++.+.+...+..+.++|+.+... .+++.++
T Consensus 83 ad~Vi~avpe~~~~k~~~~--~~l~~~~~~~~ii-~s-sts~~~~~~la~~~~~~~~~~~~hp~~p~~~----~~lveiv 154 (308)
T PRK06129 83 ADYVQESAPENLELKRALF--AELDALAPPHAIL-AS-STSALLASAFTEHLAGRERCLVAHPINPPYL----IPVVEVV 154 (308)
T ss_pred CCEEEECCcCCHHHHHHHH--HHHHHhCCCcceE-EE-eCCCCCHHHHHHhcCCcccEEEEecCCCccc----CceEEEe
Confidence 9999999998766655552 2233334445444 33 3334456678887776677788899865321 1355566
Q ss_pred c---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCcc
Q 022909 208 A---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQ 284 (290)
Q Consensus 208 ~---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~ 284 (290)
+ ++++.++.+.++++.+|+.++++++.+.+.. ++++. ...++|++.++++.|++++++++++....+.+|.
T Consensus 155 ~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i---~nrl~---~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~ 228 (308)
T PRK06129 155 PAPWTAPATLARAEALYRAAGQSPVRLRREIDGFV---LNRLQ---GALLREAFRLVADGVASVDDIDAVIRDGLGLRWS 228 (308)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHH---HHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcc
Confidence 5 7889999999999999999999987777753 33321 2777999999999999999999999999999999
Q ss_pred ccCCC
Q 022909 285 YDGNF 289 (290)
Q Consensus 285 ~~~~~ 289 (290)
+.|+|
T Consensus 229 ~~gp~ 233 (308)
T PRK06129 229 FMGPF 233 (308)
T ss_pred CcCHH
Confidence 98876
No 46
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.88 E-value=1.8e-21 Score=183.26 Aligned_cols=203 Identities=14% Similarity=0.077 Sum_probs=158.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-------------------CC-CccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------LG-AKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~aDi 130 (290)
-++|+|||+|.||..+|..|...|++|++||+++++.+.+.+ .+ +..++++++++++||+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~ 83 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW 83 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence 478999999999999999999999999999999887654321 12 5667889899999999
Q ss_pred EEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCC
Q 022909 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGD 210 (290)
Q Consensus 131 vv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 210 (290)
|++++|...+.+..++ +++.+.++++++ |.+|+.++. ...+.+.+.+.+..++.+|+... ...+++.+++++
T Consensus 84 Vieavpe~~~vk~~l~--~~l~~~~~~~~i-I~SsTsgi~-~s~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv~g~ 155 (495)
T PRK07531 84 IQESVPERLDLKRRVL--AEIDAAARPDAL-IGSSTSGFL-PSDLQEGMTHPERLFVAHPYNPV----YLLPLVELVGGG 155 (495)
T ss_pred EEEcCcCCHHHHHHHH--HHHHhhCCCCcE-EEEcCCCCC-HHHHHhhcCCcceEEEEecCCCc----ccCceEEEcCCC
Confidence 9999999888777653 234455677765 455454443 33667777666777888887632 234567777775
Q ss_pred ---HHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 211 ---KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS--CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 211 ---~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~--~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
++.++.+.++++.+|+.+++++. .+.|++.+.+ ..++|++.++++.|++++++++++....+.+|.+
T Consensus 156 ~t~~e~~~~~~~~~~~lG~~~v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~ 227 (495)
T PRK07531 156 KTSPETIRRAKEILREIGMKPVHIAK--------EIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQ 227 (495)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEeecC--------CCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccc
Confidence 78999999999999999999874 3334443333 4469999999999999999999999999999999
Q ss_pred cCCC
Q 022909 286 DGNF 289 (290)
Q Consensus 286 ~~~~ 289 (290)
.|+|
T Consensus 228 ~Gpf 231 (495)
T PRK07531 228 MGLF 231 (495)
T ss_pred cchH
Confidence 9987
No 47
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.87 E-value=5.2e-22 Score=178.30 Aligned_cols=210 Identities=16% Similarity=0.114 Sum_probs=164.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--------C------CccCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------G------AKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--------g------~~~~~~~~~~~~~aDivv~~~p 136 (290)
.|+|+|||+|.||..+|..|...|++|.+|+|++++.+.+.+. + +..+++++++++++|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 5799999999999999999999999999999998776666542 2 3355688888899999999998
Q ss_pred ChhHHHHHhcccccccccCCCCCEEEEecCC-ChhH--HHHHHHHHHH---cCCcEEeCccCCCCccccCCceEEEecCC
Q 022909 137 DPESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDT--SKLINGHIKA---TGASFLEAPVSGSKKPAEDGQLIFLAAGD 210 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~-~~~~--~~~l~~~l~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 210 (290)
.. .++.++ +.++++.++|+++++ .+.+ .+.+.+.+.+ .++.++..|....+.....+.+.++.+++
T Consensus 84 ~~-~~~~v~-------~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~ 155 (328)
T PRK14618 84 SK-ALRETL-------AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPE 155 (328)
T ss_pred hH-HHHHHH-------HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCC
Confidence 75 455554 456788899999885 4333 4566666665 56677777776655444556677788899
Q ss_pred HHHHHHHHHHHHHhCCcEEEe--------CC---------cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHH
Q 022909 211 KSLYNTVAPLLDIMGKSRFYL--------GD---------VGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVT 272 (290)
Q Consensus 211 ~~~~~~v~~ll~~~G~~~~~~--------~~---------~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~ 272 (290)
++.++.++++|+..|.+++.. +. .|.+..+|+..|...+++ .++.|+..++++.|++++++.
T Consensus 156 ~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~ 235 (328)
T PRK14618 156 PGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFY 235 (328)
T ss_pred HHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchh
Confidence 999999999999999888742 22 366667788888888888 999999999999999999999
Q ss_pred HHHhh----cCCCCccccCC
Q 022909 273 MFLQS----FSFGNLQYDGN 288 (290)
Q Consensus 273 ~~i~~----~~~gs~~~~~~ 288 (290)
+++.. ....|+...++
T Consensus 236 ~~~~~gDl~~t~~s~~~rn~ 255 (328)
T PRK14618 236 GLSGLGDLIATATSPHSRNR 255 (328)
T ss_pred cCcchhheeeEeccCCCccH
Confidence 99775 35556655554
No 48
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.87 E-value=1e-20 Score=172.49 Aligned_cols=201 Identities=14% Similarity=0.075 Sum_probs=155.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh----------------CCCcc--CCCHHHHhhcCCeEEE
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----------------LGAKY--QPSPDEVAASCDVTFA 133 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~----------------~g~~~--~~~~~~~~~~aDivv~ 133 (290)
|+|+|||+|.||..+|..++. |++|++||+++++.+.+.+ .+... ..+..++++++|+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 479999999999999977764 9999999999998877654 12222 2346677899999999
Q ss_pred EeCCh----------hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccc---cC
Q 022909 134 MLADP----------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA---ED 200 (290)
Q Consensus 134 ~~p~~----------~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~---~~ 200 (290)
++|.+ ..++.++ +++.+ ++++.++|+.|+.++...+.+.+.+.+.++.+ .|.+-.+... ..
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~---~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~--~PE~l~~G~a~~d~~ 153 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI---KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF--SPEFLREGKALYDNL 153 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH---HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE--CcccccCCccccccc
Confidence 99987 3444444 33444 68999999999999999999998887655443 5554332221 22
Q ss_pred CceEEEecCCHHHHHHHHHHHHH--hCCcEE-EeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHh
Q 022909 201 GQLIFLAAGDKSLYNTVAPLLDI--MGKSRF-YLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQ 276 (290)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~ll~~--~G~~~~-~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~ 276 (290)
.+..++.|++++..+.+.+++.. ++..+. ++++.+.|+..|++.|.+.+.. +.++|...+|++.|+|.+++.+++.
T Consensus 154 ~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV~~a~~ 233 (388)
T PRK15057 154 HPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVC 233 (388)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhc
Confidence 33367888887778888888854 454443 6899999999999999999999 9999999999999999999999997
Q ss_pred hcC
Q 022909 277 SFS 279 (290)
Q Consensus 277 ~~~ 279 (290)
.=.
T Consensus 234 ~d~ 236 (388)
T PRK15057 234 LDP 236 (388)
T ss_pred CCC
Confidence 544
No 49
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=7.4e-21 Score=166.71 Aligned_cols=209 Identities=22% Similarity=0.310 Sum_probs=181.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-----CCccCCCHHHHhh---cCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAA---SCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~---~aDivv~~~p~~~~~~ 142 (290)
...||+||+|.||+.+|.....+|++|.+|+|++++.+++-+. .+..+.+++|++. ...-|++.+.....+.
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD 82 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD 82 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence 5789999999999999999999999999999999998877652 3556667887754 5677888876655556
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHH
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD 222 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~ 222 (290)
.++ +++++.|.+|.++||-++....|+..-.++|.+.|++|+++.+++++..+..+|. ++.||++++.+.++++|.
T Consensus 83 ~~I---~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-iMpGG~~eay~~v~pil~ 158 (473)
T COG0362 83 AVI---EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-IMPGGQKEAYELVAPILT 158 (473)
T ss_pred HHH---HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC-cCCCCCHHHHHHHHHHHH
Confidence 776 5678999999999999999999999999999999999999999999999988884 699999999999999999
Q ss_pred HhCC------cEEEeCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHH-CCCCHHHHHHHHhhcCCCCc
Q 022909 223 IMGK------SRFYLGDVGNGAAMKLVVNMIMGR-SCTFSYSFLTLEF-VDFLINTVTMFLQSFSFGNL 283 (290)
Q Consensus 223 ~~G~------~~~~~~~~g~a~~~k~~~n~~~~~-~~~~~ea~~l~~~-~G~~~~~~~~~i~~~~~gs~ 283 (290)
.+.. -+.++|+.|.++++|++.|.+... |+.++|++.+.+. .|++.+++.+++..|.+|-.
T Consensus 159 ~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL 227 (473)
T COG0362 159 KIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGEL 227 (473)
T ss_pred HHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcc
Confidence 8842 245689999999999999999665 4999999998876 99999999999999988754
No 50
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.85 E-value=2e-20 Score=163.23 Aligned_cols=202 Identities=19% Similarity=0.182 Sum_probs=143.6
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC----eEEEE-eCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVW-NRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~----~V~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
|||+|||+|+||.++++.|.+.|+ +|++| +|++++.+.+.+.|+....+..++++++|+|++++| ++.++.++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 579999999999999999999998 89999 999888877777888888888999999999999996 67788887
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhC
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMG 225 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G 225 (290)
.++.+.+++++++|++..+. ..+.+.+.+... +++. +|+.+.........++...+.+++.++.++++|+.+|
T Consensus 79 --~~l~~~~~~~~~iIs~~~g~--~~~~l~~~~~~~--~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G 152 (266)
T PLN02688 79 --TELRPLLSKDKLLVSVAAGI--TLADLQEWAGGR--RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVG 152 (266)
T ss_pred --HHHHhhcCCCCEEEEecCCC--cHHHHHHHcCCC--CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCC
Confidence 34556678899988775443 344444444322 5664 6665433222211222222347788999999999999
Q ss_pred CcEEEeCCcchHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 226 KSRFYLGDVGNGAAMKLVVN---MIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 226 ~~~~~~~~~g~a~~~k~~~n---~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
. ++++++.....+...... ++...+.++.|+ +++.|++++++.+++.+++.|++.+
T Consensus 153 ~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l 211 (266)
T PLN02688 153 K-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKM 211 (266)
T ss_pred C-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9 878755222222211111 122222444555 7999999999999999999999874
No 51
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.84 E-value=3.2e-20 Score=166.50 Aligned_cols=201 Identities=18% Similarity=0.163 Sum_probs=152.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--------------CCccCCCHHHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------GAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--------------g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
|+|+|||+|.||..++..|...|++|.+|+|++++.+.+.+. ++....+.+++++++|+|++++|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 689999999999999999999999999999998877766654 244556788888999999999986
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEec-CCChhHHHHHHHHHHHc-----CCcEEeCccCCCCccccCCceEEEecCCH
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVS-TVDGDTSKLINGHIKAT-----GASFLEAPVSGSKKPAEDGQLIFLAAGDK 211 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s-~~~~~~~~~l~~~l~~~-----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 211 (290)
..++.++ +++.+.+++++++|+++ +..+...+.+.+.+.+. ...++..|....+.........++.+++.
T Consensus 82 -~~~~~v~---~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~ 157 (325)
T PRK00094 82 -QALREVL---KQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDE 157 (325)
T ss_pred -HHHHHHH---HHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence 5677777 34566778899999997 43433333444444442 33455566654433334445566777788
Q ss_pred HHHHHHHHHHHHhCCcEEEeCCc-----------------chHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHH
Q 022909 212 SLYNTVAPLLDIMGKSRFYLGDV-----------------GNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTM 273 (290)
Q Consensus 212 ~~~~~v~~ll~~~G~~~~~~~~~-----------------g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~ 273 (290)
+.++.+.++|+..|..+++..+. |.+...|+..|...+++ .++.|++.++++.|+|++++.+
T Consensus 158 ~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~ 237 (325)
T PRK00094 158 ELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLG 237 (325)
T ss_pred HHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhc
Confidence 99999999999999877766553 44444677778887777 9999999999999999999988
Q ss_pred HHh
Q 022909 274 FLQ 276 (290)
Q Consensus 274 ~i~ 276 (290)
++.
T Consensus 238 ~~~ 240 (325)
T PRK00094 238 LAG 240 (325)
T ss_pred ccH
Confidence 754
No 52
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.84 E-value=2e-19 Score=159.45 Aligned_cols=205 Identities=10% Similarity=0.070 Sum_probs=150.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----------C---------CCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L---------GAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----------~---------g~~~~~~~~~~~~~aDi 130 (290)
-++|+|||+|.||..+|..++..|++|.+||++++..+...+ . .+...+++++++++||+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 478999999999999999999999999999999875443211 1 23556789899999999
Q ss_pred EEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEec--
Q 022909 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA-- 208 (290)
Q Consensus 131 vv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-- 208 (290)
|+.++|.+.+++..++ +++.+.++++++ |.++++ .....++.+.++.. -+++....+.++.. -+++-++.
T Consensus 87 ViEavpE~l~vK~~lf--~~l~~~~~~~aI-laSnTS-~l~~s~la~~~~~p-~R~~g~HffnP~~~---~pLVEVv~g~ 158 (321)
T PRK07066 87 IQESAPEREALKLELH--ERISRAAKPDAI-IASSTS-GLLPTDFYARATHP-ERCVVGHPFNPVYL---LPLVEVLGGE 158 (321)
T ss_pred EEECCcCCHHHHHHHH--HHHHHhCCCCeE-EEECCC-ccCHHHHHHhcCCc-ccEEEEecCCcccc---CceEEEeCCC
Confidence 9999999999998884 456677888885 444444 34555676666543 33444222332221 13344443
Q ss_pred -CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccC
Q 022909 209 -GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDG 287 (290)
Q Consensus 209 -~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~ 287 (290)
.+++.++.+.++++.+|+.++.+...-.+....-+.. ..+.|++.+.++...++++++.++...++-.|.+.|
T Consensus 159 ~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~------a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~G 232 (321)
T PRK07066 159 RTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLE------ALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMG 232 (321)
T ss_pred CCCHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHH------HHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcC
Confidence 3679999999999999999998853223333222211 567999999999889999999999999999999999
Q ss_pred CC
Q 022909 288 NF 289 (290)
Q Consensus 288 ~~ 289 (290)
+|
T Consensus 233 pf 234 (321)
T PRK07066 233 TF 234 (321)
T ss_pred HH
Confidence 87
No 53
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.83 E-value=1.7e-19 Score=157.39 Aligned_cols=205 Identities=13% Similarity=0.149 Sum_probs=147.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC----eEEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~----~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
.++|+|||+|+||.++++.|...|+ +|+++||++++.+.+.+ .|+..+.+..+++++||+|++++| ++.+..++
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl 80 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI 80 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH
Confidence 5789999999999999999998874 69999999988777765 677777788889999999999998 58888887
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEecC--CHHHHHHHHHHHH
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLD 222 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~ll~ 222 (290)
+++.+.+++++++|++..| ++.+.|.+.+... .+++. +|+... ..+.+...+..+. +++..+.++++|+
T Consensus 81 ---~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~~~-~~vvR~MPN~~~--~vg~g~t~~~~~~~~~~~~~~~v~~lf~ 152 (272)
T PRK12491 81 ---NQIKDQIKNDVIVVTIAAG--KSIKSTENEFDRK-LKVIRVMPNTPV--LVGEGMSALCFNEMVTEKDIKEVLNIFN 152 (272)
T ss_pred ---HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcCCC-CcEEEECCChHH--HHcCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 4455667888999988544 4555676766432 23444 676532 3344544444332 4567889999999
Q ss_pred HhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCcccc
Q 022909 223 IMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 223 ~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
.+|.. +.+.+.....+. .+...--++++.+.|++ ..+.+.|++++++.+++.+++.|+..+.
T Consensus 153 ~~G~~-~~~~E~~~d~~t-alsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~G~a~ll 215 (272)
T PRK12491 153 IFGQT-EVVNEKLMDVVT-SISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMV 215 (272)
T ss_pred cCCCE-EEEcHHHhhhHH-HhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99995 455532222222 12221223335556666 6789999999999999999999987653
No 54
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.81 E-value=4.6e-18 Score=152.30 Aligned_cols=195 Identities=13% Similarity=0.121 Sum_probs=150.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCCcc-----chhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCC
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKS-----KCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGP 157 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~-----~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~ 157 (290)
|..+|..|...|++|++|||+++ +.+.+.+.|+..+++..++++++|+|++++|....++.++ .++.+.+++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl---~~L~~~L~~ 108 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA---KNILPHLPE 108 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH---HHHHhhCCC
Confidence 78899999999999999999886 3344556788878888899999999999999866588887 456788899
Q ss_pred CCEEEEecCCChhHH-HHHHHHHHHc----CCcEEe-CccCCCCccccCCceEEEecC--------CHHHHHHHHHHHHH
Q 022909 158 GKGYVDVSTVDGDTS-KLINGHIKAT----GASFLE-APVSGSKKPAEDGQLIFLAAG--------DKSLYNTVAPLLDI 223 (290)
Q Consensus 158 ~~~lin~s~~~~~~~-~~l~~~l~~~----~~~~~~-~p~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~ll~~ 223 (290)
++++||+|++++... +.+.+.+... ++.+.+ .++.+. ..+.+.++.++ +++.+++++++++.
T Consensus 109 g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Ga----e~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a 184 (342)
T PRK12557 109 NAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGT----PQHGHYVIAGKTTNGTELATEEQIEKCVELAES 184 (342)
T ss_pred CCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCcccccc----ccchheEEeCCCcccccCCCHHHHHHHHHHHHH
Confidence 999999999988876 5666666422 333332 222222 23333445443 78889999999999
Q ss_pred hCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHH-HHHHhhcCCCCccc
Q 022909 224 MGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTV-TMFLQSFSFGNLQY 285 (290)
Q Consensus 224 ~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~-~~~i~~~~~gs~~~ 285 (290)
+|+++++++ .+.+...|.+.|++.+.. .+.+|++.++++.|.+++++ .+++.++..|+..+
T Consensus 185 ~G~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~~~~~a~l 247 (342)
T PRK12557 185 IGKEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMTLQTMASL 247 (342)
T ss_pred cCCEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 999887777 589999999999999998 99999999999999887655 45566666665544
No 55
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.81 E-value=4.5e-18 Score=157.69 Aligned_cols=200 Identities=20% Similarity=0.282 Sum_probs=154.9
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH-HhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-ISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~-~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
|+|+||| +|.||..+++.|...|++|.+|+|++++.... .+.|+....+.++.++++|+|++++|. ..+..++ +
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl---~ 76 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI---K 76 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH---H
Confidence 5799997 89999999999999999999999998765333 345776677888889999999999987 5566776 4
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEecC---CHHHHHHHHHHHHHhC
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG---DKSLYNTVAPLLDIMG 225 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~ll~~~G 225 (290)
++.+.++++++++++++......+.+.+.++ .+..|++ +|++++......+..++++++ +++.++.++++++.+|
T Consensus 77 ~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G 155 (437)
T PRK08655 77 EVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEG 155 (437)
T ss_pred HHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 5677889999999999988877777777654 3677887 699987655556666666654 4678899999999999
Q ss_pred CcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcC
Q 022909 226 KSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFS 279 (290)
Q Consensus 226 ~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~ 279 (290)
.+++.+++..+...+..++.+.+....++..+ +.+.|++.++...+....+
T Consensus 156 ~~v~~~~~e~HD~~~a~vs~lph~~a~al~~~---l~~~g~~~~~~~~~a~~~f 206 (437)
T PRK08655 156 ARVIVTSPEEHDRIMSVVQGLTHFAYISIAST---LKRLGVDIKESRKFASPIY 206 (437)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCHHHHHhhcChhh
Confidence 99998988888888766666655444444444 3677888887665554443
No 56
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.80 E-value=1.8e-18 Score=148.33 Aligned_cols=201 Identities=18% Similarity=0.208 Sum_probs=147.4
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC----CeEEEEeCCccchhhHH-hCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKSKCDPLI-SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g----~~V~~~d~~~~~~~~~~-~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
++|||||+|+||++++..|.+.| .+|++.+|++++...+. ++|+..+++.++++.++|+|++++ +|+....++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~Lav-KPq~~~~vl- 79 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAV-KPQDLEEVL- 79 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEe-ChHhHHHHH-
Confidence 78999999999999999999998 58999999998876444 477766778889999999999999 668888887
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEec--CCHHHHHHHHHHHHH
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI 223 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~ll~~ 223 (290)
.++.. ..+++++|++.. .+..+.|.+.+. +.+++. +|+.... ...+...+..+ .+++..+.+.++|+.
T Consensus 80 --~~l~~-~~~~~lvISiaA--Gv~~~~l~~~l~--~~~vvR~MPNt~a~--vg~g~t~i~~~~~~~~~~~~~v~~l~~~ 150 (266)
T COG0345 80 --SKLKP-LTKDKLVISIAA--GVSIETLERLLG--GLRVVRVMPNTPAL--VGAGVTAISANANVSEEDKAFVEALLSA 150 (266)
T ss_pred --HHhhc-ccCCCEEEEEeC--CCCHHHHHHHcC--CCceEEeCCChHHH--HcCcceeeecCccCCHHHHHHHHHHHHh
Confidence 33334 668999998854 455567777776 456655 6765433 33444443433 356888899999999
Q ss_pred hCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 224 MGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 224 ~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+|..+ .+++.....+. .++..--++++.+.|++ ..+.+.|++++++++++.+++.|+..+
T Consensus 151 ~G~v~-~v~E~~~da~T-aisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakl 211 (266)
T COG0345 151 VGKVV-EVEESLMDAVT-ALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKL 211 (266)
T ss_pred cCCeE-EechHHhhHHH-HHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99955 45543222222 22222233346667877 678999999999999999999998754
No 57
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.80 E-value=2.3e-18 Score=152.00 Aligned_cols=188 Identities=15% Similarity=0.163 Sum_probs=139.3
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----------C-------------CCccCCCHHHHhhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L-------------GAKYQPSPDEVAAS 127 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~ 127 (290)
++|+|||+|.||..+|..|+..|++|++||+++++.+.+.+ . ++..++++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 57999999999999999999999999999999887665432 0 13346688889999
Q ss_pred CCeEEEEeCChhHHHHHhcccccccccCCCCCEE-EEecCCChhHHHHHHHHHHH----cCCcEEeCccCCCCccccCCc
Q 022909 128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKKPAEDGQ 202 (290)
Q Consensus 128 aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l-in~s~~~~~~~~~l~~~l~~----~~~~~~~~p~~~~~~~~~~~~ 202 (290)
+|+|++|+|.+.+++..++ .++.+.+++++++ +|+|+..+.. +.+.++. .+++|+ .|+.. .+
T Consensus 82 aD~Vi~avpe~~~~k~~~~--~~l~~~~~~~~il~~~tSt~~~~~---l~~~~~~~~r~~g~h~~-~Pv~~-------~~ 148 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVF--ETADAHAPAECYIATNTSTMSPTE---IASFTKRPERVIAMHFF-NPVHK-------MK 148 (288)
T ss_pred CCEEEEeccCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCcccEEEEecC-CCccc-------Cc
Confidence 9999999999887776653 3456678889876 7888877654 4444432 244454 44432 35
Q ss_pred eEEEecC---CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhc
Q 022909 203 LIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSF 278 (290)
Q Consensus 203 ~~~~~~~---~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~ 278 (290)
++.++++ ++++++.+.++++.+|+.++++++.. + ++.|- +. ..++|++.+.++...++++++.++...
T Consensus 149 Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~-G----f~~nR---l~~~~~~ea~~~~~~gv~~~~~iD~~~~~g 220 (288)
T PRK09260 149 LVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFP-G----FVTSR---ISALVGNEAFYMLQEGVATAEDIDKAIRLG 220 (288)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcc-c----HHHHH---HHHHHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 6778887 88999999999999999999998622 1 22221 11 456899888877668899999998765
Q ss_pred CC
Q 022909 279 SF 280 (290)
Q Consensus 279 ~~ 280 (290)
++
T Consensus 221 ~g 222 (288)
T PRK09260 221 LN 222 (288)
T ss_pred CC
Confidence 54
No 58
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.80 E-value=9.8e-18 Score=146.99 Aligned_cols=196 Identities=15% Similarity=0.267 Sum_probs=142.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHhCCCc-cCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
|+|+|||+|.||..+++.|...|+ +|.+||+++++.+.+.+.|+. ...+.+++. ++|+||+++|. ..+..++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~-~~~~~~~--- 75 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPV-DAIIEIL--- 75 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcH-HHHHHHH---
Confidence 479999999999999999999885 789999998877777666653 345677765 59999999986 4556666
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCC----ccc----cCCceEEEec---CCHHHHHH
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSK----KPA----EDGQLIFLAA---GDKSLYNT 216 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~----~~~----~~~~~~~~~~---~~~~~~~~ 216 (290)
+++.+ ++++++++++++......+.+.+. .+..|++ +|+.+.+ ... ..+..+++++ .+++.++.
T Consensus 76 ~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~ 151 (275)
T PRK08507 76 PKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQER 151 (275)
T ss_pred HHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHH
Confidence 34566 889999999877654444333322 2346777 6997643 211 2455666665 35678899
Q ss_pred HHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCC
Q 022909 217 VAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSF 280 (290)
Q Consensus 217 v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~ 280 (290)
+.++++.+|.+++++++.+++..+++++++.+.+..++.+++. .+.+.+.+.++....+.
T Consensus 152 v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph~~a~~l~~~~~----~~~~~~~~~~~~~~gfr 211 (275)
T PRK08507 152 AKEIFSGLGMRIVYMDAKEHDLHAAYISHLPHIISFALANTVL----KEEDERNIFDLAGGGFR 211 (275)
T ss_pred HHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHHH----hcCChHHHHhhcccchh
Confidence 9999999999999999999999999999998755566666651 35566665555544433
No 59
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.80 E-value=3.1e-18 Score=161.37 Aligned_cols=187 Identities=18% Similarity=0.258 Sum_probs=146.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhH-----------HhCC-------------CccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~ 126 (290)
-++|||||+|.||..||..++..|++|++||++++..+.. .+.| +..++++++ +.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~ 85 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LA 85 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hC
Confidence 4789999999999999999999999999999999876653 3334 456677766 56
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEE-EEecCCChhHHHHHHHHHHH----cCCcEEe-CccCCCCccccC
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKA----TGASFLE-APVSGSKKPAED 200 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~l-in~s~~~~~~~~~l~~~l~~----~~~~~~~-~p~~~~~~~~~~ 200 (290)
+||+||.++|.+.+++..+++ ++-..+++++++ .|+|+.++. ++...+.. .|+||++ +|++
T Consensus 86 ~aDlViEav~E~~~vK~~vf~--~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~-------- 152 (507)
T PRK08268 86 DCDLVVEAIVERLDVKQALFA--QLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLM-------- 152 (507)
T ss_pred CCCEEEEcCcccHHHHHHHHH--HHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccC--------
Confidence 999999999999999988853 344556789988 588887775 45555543 2667777 4554
Q ss_pred CceEEEecC---CHHHHHHHHHHHHHhCCcEEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHh
Q 022909 201 GQLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQ 276 (290)
Q Consensus 201 ~~~~~~~~~---~~~~~~~v~~ll~~~G~~~~~~~~-~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~ 276 (290)
+++.++++ ++++++.+.++++.+|+.++++++ .| ++.|-+. ...++|++.++++.|.+++++++++.
T Consensus 153 -~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll--~~~~~Ea~~l~~~g~~~~~~iD~al~ 223 (507)
T PRK08268 153 -KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAA--RPYYTEALRVLEEGVADPATIDAILR 223 (507)
T ss_pred -eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHH--HHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 35666664 789999999999999999999986 45 2333221 14679999999999999999999998
Q ss_pred hcCC
Q 022909 277 SFSF 280 (290)
Q Consensus 277 ~~~~ 280 (290)
..++
T Consensus 224 ~~~G 227 (507)
T PRK08268 224 EAAG 227 (507)
T ss_pred hcCC
Confidence 7665
No 60
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.80 E-value=1.2e-18 Score=153.08 Aligned_cols=201 Identities=13% Similarity=0.158 Sum_probs=135.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC----CeEEEEeCCcc-chhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKS-KCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g----~~V~~~d~~~~-~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
.|+|+|||+|+||.++++.|...| .+|.+++|+++ +.+.+.+ .|+....+..++++++|+|++++|. +....+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p-~~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKP-KDVAEA 81 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCH-HHHHHH
Confidence 579999999999999999999987 78999999764 4455544 4777777888899999999999975 666776
Q ss_pred hcccccccccCCCCCEEEEe-cCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEecCC---HHHHHHHHH
Q 022909 145 ACGKHGAASGMGPGKGYVDV-STVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAGD---KSLYNTVAP 219 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~-s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~ 219 (290)
+ +++.+.+++++++|++ ++..+. .+.+.+. .+..++. +|++. ......++++++++ ++.++.+++
T Consensus 82 l---~~l~~~~~~~~liIs~~aGi~~~---~l~~~~~-~~~~v~r~mPn~~---~~~~~~~t~~~~~~~~~~~~~~~v~~ 151 (279)
T PRK07679 82 L---IPFKEYIHNNQLIISLLAGVSTH---SIRNLLQ-KDVPIIRAMPNTS---AAILKSATAISPSKHATAEHIQTAKA 151 (279)
T ss_pred H---HHHHhhcCCCCEEEEECCCCCHH---HHHHHcC-CCCeEEEECCCHH---HHHhcccEEEeeCCCCCHHHHHHHHH
Confidence 6 3455667788999997 444433 3444432 2333443 45422 12223334555554 568899999
Q ss_pred HHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCcc
Q 022909 220 LLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQ 284 (290)
Q Consensus 220 ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~ 284 (290)
+|+.+|..+ .+.+.....+...... -.+++..+.|++ ..+++.|++++++.+++.+++.|+..
T Consensus 152 l~~~~G~~~-~v~e~~~~~~~a~~Gs-gpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~ 215 (279)
T PRK07679 152 LFETIGLVS-VVEEEDMHAVTALSGS-GPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAE 215 (279)
T ss_pred HHHhCCcEE-EeCHHHhhhHHHhhcC-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999999855 4432111000111100 011125555666 36899999999999999999998844
No 61
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.79 E-value=1.3e-17 Score=148.73 Aligned_cols=203 Identities=13% Similarity=0.109 Sum_probs=140.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-----C--------------CccCCCHHHHhhcCCeE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----G--------------AKYQPSPDEVAASCDVT 131 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-----g--------------~~~~~~~~~~~~~aDiv 131 (290)
.++|+|||+|.||..+|..|+..|++|++||+++++.+.+.+. + +...++.+++++++|+|
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlV 83 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLV 83 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEE
Confidence 4789999999999999999999999999999998776554331 1 23456788888999999
Q ss_pred EEEeCChhHH-HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEecC
Q 022909 132 FAMLADPESA-MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG 209 (290)
Q Consensus 132 v~~~p~~~~~-~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~ 209 (290)
++++|...+. ..++ .++....+++++++..+.+.. ..++.+.+.. ..+++. +|.. ++. . ..++.++.+
T Consensus 84 i~av~~~~~~~~~v~---~~l~~~~~~~~ii~s~tsg~~--~~~l~~~~~~-~~~~ig~h~~~-p~~-~--~~l~~i~~g 153 (311)
T PRK06130 84 IEAVPEKLELKRDVF---ARLDGLCDPDTIFATNTSGLP--ITAIAQAVTR-PERFVGTHFFT-PAD-V--IPLVEVVRG 153 (311)
T ss_pred EEeccCcHHHHHHHH---HHHHHhCCCCcEEEECCCCCC--HHHHHhhcCC-cccEEEEccCC-CCc-c--CceEEEeCC
Confidence 9999987654 4444 233445666766654433322 3466666543 233444 3322 221 1 123344444
Q ss_pred ---CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCcccc
Q 022909 210 ---DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 210 ---~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
+++.++.+.++++.+|+.+++++....+. ++++++. ..++|++.++++.|++++++++++....+-.+...
T Consensus 154 ~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~---i~nr~~~---~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~ 227 (311)
T PRK06130 154 DKTSPQTVATTMALLRSIGKRPVLVKKDIPGF---IANRIQH---ALAREAISLLEKGVASAEDIDEVVKWSLGIRLALT 227 (311)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc---HHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCC
Confidence 57899999999999999999887432232 4444432 55799999999999999999999988777655556
Q ss_pred CCC
Q 022909 287 GNF 289 (290)
Q Consensus 287 ~~~ 289 (290)
|+|
T Consensus 228 Gp~ 230 (311)
T PRK06130 228 GPL 230 (311)
T ss_pred CHH
Confidence 665
No 62
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.79 E-value=4.4e-18 Score=159.89 Aligned_cols=187 Identities=14% Similarity=0.117 Sum_probs=142.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhH-----------HhCC-------------CccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~ 126 (290)
-++|+|||+|.||..||..++..|++|.+||++++..+.. .+.| +..++++++ +.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 4789999999999999999999999999999998876542 2223 345677765 57
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE-EecCCChhHHHHHHHHHHH----cCCcEEe-CccCCCCccccC
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKA----TGASFLE-APVSGSKKPAED 200 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li-n~s~~~~~~~~~l~~~l~~----~~~~~~~-~p~~~~~~~~~~ 200 (290)
+||+||.++|.+.+++..+++ ++-...++++++. |+|+.++. ++.+.+.+ .|+||++ +|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~--~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G~HFf~Papv~-------- 150 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFA--QLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAGLHFFNPAPVM-------- 150 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHH--HHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEEEeccCccccC--------
Confidence 999999999999999888743 3445577777765 55555543 45555543 3567776 4544
Q ss_pred CceEEEecC---CHHHHHHHHHHHHHhCCcEEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHh
Q 022909 201 GQLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQ 276 (290)
Q Consensus 201 ~~~~~~~~~---~~~~~~~v~~ll~~~G~~~~~~~~-~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~ 276 (290)
+++.++++ +++.++.+.++++.+|+.++++++ .|. +.++++. ..+.|++.++++.+++++++++++.
T Consensus 151 -~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf-----i~Nrl~~---~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 151 -ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF-----IVNRVAR---PYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred -ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc-----HHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 35677777 889999999999999999999986 442 2222222 5679999999999999999999998
Q ss_pred hcCC
Q 022909 277 SFSF 280 (290)
Q Consensus 277 ~~~~ 280 (290)
..++
T Consensus 222 ~~~G 225 (503)
T TIGR02279 222 DGAG 225 (503)
T ss_pred hcCC
Confidence 7655
No 63
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.79 E-value=2.1e-18 Score=153.53 Aligned_cols=184 Identities=20% Similarity=0.197 Sum_probs=136.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+|+|+|||+|.||+++|+.|...|++|.+|+|++. .+++++++++|+|++++|. ..++.++ ++
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~---~~ 66 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVA---EQ 66 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHH---HH
Confidence 68999999999999999999999999999999853 3677889999999999998 5778877 33
Q ss_pred ccc-cCCCCCEEEEecC-CChhHHHHHHHHHHHcCCcEEeCccC--CCC-----ccccCCceEEEecCCHHHHHHHHHHH
Q 022909 151 AAS-GMGPGKGYVDVST-VDGDTSKLINGHIKATGASFLEAPVS--GSK-----KPAEDGQLIFLAAGDKSLYNTVAPLL 221 (290)
Q Consensus 151 ~~~-~~~~~~~lin~s~-~~~~~~~~l~~~l~~~~~~~~~~p~~--~~~-----~~~~~~~~~~~~~~~~~~~~~v~~ll 221 (290)
+.. .+++++++|++++ ..+.....+.+.+... +.++|+. .++ ........+++++++.+..+.++++|
T Consensus 67 l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~---~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll 143 (308)
T PRK14619 67 VQALNLPPETIIVTATKGLDPETTRTPSQIWQAA---FPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIF 143 (308)
T ss_pred HHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHH---cCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHh
Confidence 333 3678999999886 3333333333333322 2233432 221 11233456778889999999999999
Q ss_pred HHhCCcEEEeCCc---chHHHH--------------HHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHH
Q 022909 222 DIMGKSRFYLGDV---GNGAAM--------------KLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMF 274 (290)
Q Consensus 222 ~~~G~~~~~~~~~---g~a~~~--------------k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~ 274 (290)
+..+.+++..++. ..+..+ ++..|...+.+ .++.|++.++++.|++++++.++
T Consensus 144 ~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~ 214 (308)
T PRK14619 144 SSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGL 214 (308)
T ss_pred CCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccccc
Confidence 9999888876662 222233 36678877777 99999999999999999999874
No 64
>PLN02256 arogenate dehydrogenase
Probab=99.78 E-value=2.5e-17 Score=145.54 Aligned_cols=210 Identities=15% Similarity=0.118 Sum_probs=148.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHh-hcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|+|||+|.||+.+++.|.+.|++|.+|++++. .+...+.|+....+.++++ .++|+|++|+|. ..+..++ +
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl---~ 110 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVL---R 110 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHH---H
Confidence 68999999999999999999999999999999864 2334446776677888876 479999999986 5678877 3
Q ss_pred cc-cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc--ccCCceEEEec-------CCHHHHHHHH
Q 022909 150 GA-ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--AEDGQLIFLAA-------GDKSLYNTVA 218 (290)
Q Consensus 150 ~~-~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~--~~~~~~~~~~~-------~~~~~~~~v~ 218 (290)
++ ...++++++++|+++++....+.+.+.+.. +..|+. +|+++.+.. ...+...++.. .+++..+.+.
T Consensus 111 ~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~-~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 189 (304)
T PLN02256 111 SLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE-EFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFL 189 (304)
T ss_pred hhhhhccCCCCEEEecCCchHHHHHHHHHhCCC-CCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHH
Confidence 34 456889999999999887777777776643 456777 899998753 22333333332 2567889999
Q ss_pred HHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCcccc
Q 022909 219 PLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 219 ~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
++++.+|.+++.+....+...+..++.+-+.+-.++.+.. .-..-.|-..+++.+++.....+++.+|
T Consensus 190 ~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la~~L~~~~~~~~~~~~~gfrd~tria~r~~~~~p~lw 258 (304)
T PLN02256 190 DIFEEEGCRMVEMSCEEHDRYAAGSQFITHTVGRILGKMELESTPINTKGYETLLRLVENTSSDSFDLY 258 (304)
T ss_pred HHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHHHHHHHcCCcccccccccHHHHHHHHHhhcCCCHHHH
Confidence 9999999999999988888887766655443323332221 0012223346666666665555555443
No 65
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.78 E-value=6.5e-18 Score=146.76 Aligned_cols=198 Identities=18% Similarity=0.172 Sum_probs=139.3
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCe---EEEEeCCccchhhHHhC--CCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCD---VTVWNRTKSKCDPLISL--GAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~---V~~~d~~~~~~~~~~~~--g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
|+|||||+|+||+++++.|...|++ +.+|+|++++.+.+.+. +...+.+.+++++++|+|++++| ++....++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl- 78 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVL- 78 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence 4799999999999999999988853 57899998887776653 46667788899999999999998 57778877
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK 226 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~ 226 (290)
+++ .+++++++|+++ .....+.+.+.++.....+..+|+.... ...+. +.++.++ +.++++|+.+|.
T Consensus 79 --~~l--~~~~~~~vis~~--ag~~~~~l~~~~~~~~~~~r~~P~~~~a--~~~g~-t~~~~~~----~~~~~l~~~lG~ 145 (258)
T PRK06476 79 --RAL--RFRPGQTVISVI--AATDRAALLEWIGHDVKLVRAIPLPFVA--ERKGV-TAIYPPD----PFVAALFDALGT 145 (258)
T ss_pred --HHh--ccCCCCEEEEEC--CCCCHHHHHHHhCCCCCEEEECCCChhh--hCCCC-eEecCCH----HHHHHHHHhcCC
Confidence 222 256888999875 4566667777775444455567874322 22333 3344332 589999999999
Q ss_pred cEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 227 SRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 227 ~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
.++...+.....+..+ ......++..+.++..++++.|++++++.+++.+++.|+..+
T Consensus 146 ~~~~~~e~~~d~~~a~-~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l 203 (258)
T PRK06476 146 AVECDSEEEYDLLAAA-SALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQD 203 (258)
T ss_pred cEEECChHhccceeeh-hccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 7763323222222111 122222225556666899999999999999999999998766
No 66
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.78 E-value=2e-17 Score=150.57 Aligned_cols=179 Identities=13% Similarity=0.204 Sum_probs=139.6
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
.++|+||| +|.||..+|+.|...|++|.+||+++. ++.+++++++|+|++|+|... +..++ +
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~-~~~~~---~ 160 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHL-TEEVI---A 160 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHH-HHHHH---H
Confidence 58999999 999999999999999999999998631 256678899999999999854 56666 3
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEecC-CHHHHHHHHHHHHHhCCc
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG-DKSLYNTVAPLLDIMGKS 227 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~ll~~~G~~ 227 (290)
++.+ ++++++++|+++.+.....++.+.+. ..|++ ||++|++.....+..++++++ ++++++.+.++++.+|.+
T Consensus 161 ~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~ 236 (374)
T PRK11199 161 RLPP-LPEDCILVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGAR 236 (374)
T ss_pred HHhC-CCCCcEEEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCCE
Confidence 4555 89999999999988766666665432 25884 999998776666666667666 557889999999999999
Q ss_pred EEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q 022909 228 RFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTM 273 (290)
Q Consensus 228 ~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~ 273 (290)
++++++.+++..+++++.+.+. .+++++..+++ .+.+.+.+.+
T Consensus 237 v~~~~~~~HD~~~a~vshLpH~--~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 237 LHRISAVEHDQNMAFIQALRHF--ATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred EEECCHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-cCCCHHHHHH
Confidence 9999999999999999855222 44455555555 6777666533
No 67
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=9.7e-18 Score=145.10 Aligned_cols=208 Identities=18% Similarity=0.282 Sum_probs=180.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh---CC--CccCCCHHHHhh---cCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS---LG--AKYQPSPDEVAA---SCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~---~g--~~~~~~~~~~~~---~aDivv~~~p~~~~~~ 142 (290)
...||+||++-||+.++......|+.|.+|+|+..+.+++.+ .| +....|++|++. ....|++.+.....+.
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD 85 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVD 85 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHH
Confidence 478999999999999999999999999999999988877654 22 444568888764 5788888887777777
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHH
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD 222 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~ 222 (290)
.++ +++.+.|.+|.+|||-++....++..-.+.+.++|+-|+++.+++++..+..++. ++.|+++++...++++|.
T Consensus 86 ~~I---~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS-lMpGg~~~Awp~ik~ifq 161 (487)
T KOG2653|consen 86 QFI---EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS-LMPGGSKEAWPHIKDIFQ 161 (487)
T ss_pred HHH---HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc-cCCCCChHHHHHHHHHHH
Confidence 777 6788999999999999999999999999999999999999999999999988885 589999999999999998
Q ss_pred HhCC-------cEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHH-CCCCHHHHHHHHhhcCCCC
Q 022909 223 IMGK-------SRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEF-VDFLINTVTMFLQSFSFGN 282 (290)
Q Consensus 223 ~~G~-------~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~-~G~~~~~~~~~i~~~~~gs 282 (290)
.+.. -..++++.|++++.|++.|.+...- +.++|++.+..+ .|++.+++.+++.+|.+|-
T Consensus 162 ~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~ge 230 (487)
T KOG2653|consen 162 KIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGE 230 (487)
T ss_pred HHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccc
Confidence 7632 2456899999999999999996664 999999998887 9999999999999998874
No 68
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.77 E-value=1.1e-17 Score=146.97 Aligned_cols=172 Identities=18% Similarity=0.263 Sum_probs=130.1
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-cCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
|+|+|||+|.||..++..|...|++|.+||++++..+.+.+.|.. ...+..+.++++|+|++|+|. ..+..++ ++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~-~~~~~~~---~~ 76 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPI-GLLLPPS---EQ 76 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCH-HHHHHHH---HH
Confidence 479999999999999999999999999999998877777666542 222333567899999999986 4445555 45
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccc--------cCCceEEEec---CCHHHHHHHH
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPA--------EDGQLIFLAA---GDKSLYNTVA 218 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~--------~~~~~~~~~~---~~~~~~~~v~ 218 (290)
+.+.++++.+++|+++.+....+.+. +....|++ ||+++++... ..+...+++. ++++.++.++
T Consensus 77 l~~~l~~~~ii~d~~Svk~~~~~~~~----~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~ 152 (279)
T PRK07417 77 LIPALPPEAIVTDVGSVKAPIVEAWE----KLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVE 152 (279)
T ss_pred HHHhCCCCcEEEeCcchHHHHHHHHH----HhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHH
Confidence 66778899999999887765443333 22335777 8999876321 2344444443 4678899999
Q ss_pred HHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH
Q 022909 219 PLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS 251 (290)
Q Consensus 219 ~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~ 251 (290)
++++.+|..++++++.+++..+++++++...+.
T Consensus 153 ~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a 185 (279)
T PRK07417 153 ELAVSLGSKIYTADPEEHDRAVALISHLPVMVS 185 (279)
T ss_pred HHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHH
Confidence 999999999999999999999999988775554
No 69
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.77 E-value=1.6e-17 Score=145.05 Aligned_cols=202 Identities=16% Similarity=0.153 Sum_probs=139.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC---CeEEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG---CDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g---~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
+++|+|||+|.||..+++.|...| .+|.+++|++++.+.+.+ .++....+.+++++++|+|++++|. ..++.++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~- 79 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVL- 79 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHH-
Confidence 578999999999999999999988 789999999888777766 3777777888889999999999975 5677776
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEec--CCHHHHHHHHHHHHH
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI 223 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~ll~~ 223 (290)
+++.+.+ ++++|+++.+-. .+.+.+.+. .+.+++. +|... .....+...+..+ .++++++.++++++.
T Consensus 80 --~~l~~~~--~~~vvs~~~gi~--~~~l~~~~~-~~~~iv~~~P~~p--~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~ 150 (267)
T PRK11880 80 --SELKGQL--DKLVVSIAAGVT--LARLERLLG-ADLPVVRAMPNTP--ALVGAGMTALTANALVSAEDRELVENLLSA 150 (267)
T ss_pred --HHHHhhc--CCEEEEecCCCC--HHHHHHhcC-CCCcEEEecCCch--HHHcCceEEEecCCCCCHHHHHHHHHHHHh
Confidence 3333434 467888866553 345555543 2345554 56432 2223333333433 367889999999999
Q ss_pred hCCcEEEeC-CcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 224 MGKSRFYLG-DVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 224 ~G~~~~~~~-~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+|..+ .+. +.....+..+..+. .++...+.|++ ..+.+.|++++++.+++.+++.|+..+
T Consensus 151 lG~~~-~~~~e~~~d~~~a~~~~~-pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~ 212 (267)
T PRK11880 151 FGKVV-WVDDEKQMDAVTAVSGSG-PAYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKL 212 (267)
T ss_pred CCeEE-EECChHhcchHHHHhcCh-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99844 555 33333333333322 22223445555 567889999999999999999887654
No 70
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.76 E-value=1.7e-16 Score=147.86 Aligned_cols=209 Identities=16% Similarity=0.117 Sum_probs=161.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHC--CCeEEEEeCCccchhhHHhC-------------------CCccCCCHHHHhhcCCe
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISL-------------------GAKYQPSPDEVAASCDV 130 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~--g~~V~~~d~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~aDi 130 (290)
|+|+|||+|.+|..+|..|+.. |++|+++|.++++.+.+.+. .+.++++.++.++++|+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 7899999999999999999987 58899999999887775432 13345667778899999
Q ss_pred EEEEeCChh-----------HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc--C--CcEEeCccCCCC
Q 022909 131 TFAMLADPE-----------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--G--ASFLEAPVSGSK 195 (290)
Q Consensus 131 vv~~~p~~~-----------~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~--~--~~~~~~p~~~~~ 195 (290)
+++|+|++. +...+....+++.+.++++.++|.-|+..+..++.+.+.+.+. + .++..+|.+-.+
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~~ 161 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAE 161 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccCC
Confidence 999998654 2223332235567788999999999999999999998888763 2 345668877655
Q ss_pred ccc---cCCceEEEecCC-----HHHHHHHHHHHHHhC-CcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC
Q 022909 196 KPA---EDGQLIFLAAGD-----KSLYNTVAPLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVD 265 (290)
Q Consensus 196 ~~~---~~~~~~~~~~~~-----~~~~~~v~~ll~~~G-~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G 265 (290)
..+ ...+..+++|+. +++.+.++++++.+- ..++.+.+...|++.|++.|.+.++. +.++|...+|++.|
T Consensus 162 G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~g 241 (473)
T PLN02353 162 GTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241 (473)
T ss_pred CCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 433 223334555543 345788899999885 24667788999999999999999999 88899999999999
Q ss_pred CCHHHHHHHHhhcCC
Q 022909 266 FLINTVTMFLQSFSF 280 (290)
Q Consensus 266 ~~~~~~~~~i~~~~~ 280 (290)
+|..++.++++.-..
T Consensus 242 iD~~eV~~~~~~d~r 256 (473)
T PLN02353 242 ADVSQVSHAVGKDSR 256 (473)
T ss_pred CCHHHHHHHhCCCCc
Confidence 999999999886543
No 71
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.76 E-value=4e-17 Score=144.57 Aligned_cols=189 Identities=16% Similarity=0.195 Sum_probs=134.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhh-----------HHhCC-------------CccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----------LISLG-------------AKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~ 126 (290)
.++|+|||+|.||..+|..++..|++|.+||+++++.+. +.+.| ....++. +.++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR 82 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence 478999999999999999999999999999999876542 22222 2233444 5689
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE-EecCCChhHHHHHHHHHHH----cCCcEEeCccCCCCccccCC
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKKPAEDG 201 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li-n~s~~~~~~~~~l~~~l~~----~~~~~~~~p~~~~~~~~~~~ 201 (290)
+||+|++++|.+.+.+..++ .++.+.++++++|+ |+|+..+. .+.+.+.. .++|++++|...
T Consensus 83 ~aD~Vieav~e~~~~k~~v~--~~l~~~~~~~~il~s~tS~i~~~---~l~~~~~~~~r~~g~h~~~pp~~~-------- 149 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLF--SELDRICKPSAILASNTSSISIT---RLASATQRPQQVIGMHFMNPPPIM-------- 149 (295)
T ss_pred CCCEEEEcCccCHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCCcceEEEeccCCcccC--------
Confidence 99999999999888887773 34566788998886 66666544 34444432 134555554432
Q ss_pred ceEEEec---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhc
Q 022909 202 QLIFLAA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSF 278 (290)
Q Consensus 202 ~~~~~~~---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~ 278 (290)
+++.++. ++++.++.+.++++.+|+.++++++..- . +.+.++. ..++|++.+.++...++++++.++...
T Consensus 150 ~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g-~---i~nri~~---~~~~ea~~~~~~gv~~~~~iD~~~~~g 222 (295)
T PLN02545 150 KLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG-F---IVNRILM---PMINEAFYALYTGVASKEDIDTGMKLG 222 (295)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc-H---HHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 2344443 4789999999999999999998876321 1 2222222 456899998888878999999988654
Q ss_pred CC
Q 022909 279 SF 280 (290)
Q Consensus 279 ~~ 280 (290)
++
T Consensus 223 ~g 224 (295)
T PLN02545 223 TN 224 (295)
T ss_pred cC
Confidence 43
No 72
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.75 E-value=8.9e-17 Score=142.14 Aligned_cols=189 Identities=16% Similarity=0.204 Sum_probs=131.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----------CC-------------CccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------LG-------------AKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~ 126 (290)
.++|+|||+|.||..+|..++..|++|.+||++++..+...+ .| +...++++ .++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 82 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLA 82 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hhc
Confidence 588999999999999999999999999999999877654321 12 34456665 478
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE-EecCCChhHHHHHHHHHHHc----CCcEEe-CccCCCCccccC
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKAT----GASFLE-APVSGSKKPAED 200 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li-n~s~~~~~~~~~l~~~l~~~----~~~~~~-~p~~~~~~~~~~ 200 (290)
++|+|++++|.+.+.+..++ +++.+.++++++++ |+|+..+ .++.+.+... ++|+++ +|+....
T Consensus 83 ~aD~Vieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~~~r~~g~h~~~p~~~~~~v----- 152 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIF--AQLCPVLKPEAILATNTSSISI---TRLASATDRPERFIGIHFMNPVPVMKLV----- 152 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCCcccEEEeeccCCcccCceE-----
Confidence 99999999998877665553 35667788999887 5555443 2566665321 345554 2222111
Q ss_pred CceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhc
Q 022909 201 GQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSF 278 (290)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~ 278 (290)
.++.-.+++++.++.+.++++.+|+.++++++.+ -++.++++. ..+.|++.+.++.-.++++++.++...
T Consensus 153 -ei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~~---~~~~ea~~~~~~g~~~~~~iD~~~~~g 222 (292)
T PRK07530 153 -ELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRILL---PMINEAIYTLYEGVGSVEAIDTAMKLG 222 (292)
T ss_pred -EEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHHH---HHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 1111134688999999999999999999887754 233333333 445888877777556899999998643
No 73
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.75 E-value=8.3e-17 Score=141.93 Aligned_cols=197 Identities=11% Similarity=0.055 Sum_probs=137.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-------------------------CCCccCCCHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------------LGAKYQPSPDEVA 125 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-------------------------~g~~~~~~~~~~~ 125 (290)
.++|+|||+|.||..+|..++..|++|++||++++..+...+ .++..++++++++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 378999999999999999999999999999999875444321 1234567888889
Q ss_pred hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEE
Q 022909 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF 205 (290)
Q Consensus 126 ~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~ 205 (290)
+++|+|++++|.+.+.+..++ +++.+.++++++|++.+++.. ..++.+.++. .-+++....+.+.. ..+++.
T Consensus 83 ~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~sntSt~~--~~~~~~~~~~-~~r~vg~Hf~~p~~---~~~lve 154 (287)
T PRK08293 83 KDADLVIEAVPEDPEIKGDFY--EELAKVAPEKTIFATNSSTLL--PSQFAEATGR-PEKFLALHFANEIW---KNNTAE 154 (287)
T ss_pred cCCCEEEEeccCCHHHHHHHH--HHHHhhCCCCCEEEECcccCC--HHHHHhhcCC-cccEEEEcCCCCCC---cCCeEE
Confidence 999999999998766555442 345566788888854333332 2345554432 33566532233221 234444
Q ss_pred Ee---cCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCC
Q 022909 206 LA---AGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFG 281 (290)
Q Consensus 206 ~~---~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~g 281 (290)
++ .++++.++.+.++++.+|+.++.+.....+.....+.. ..++|++.+.++...++++++.++...++.
T Consensus 155 vv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~------~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~ 227 (287)
T PRK08293 155 IMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLV------PFLSAALALWAKGVADPETIDKTWMIATGA 227 (287)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHH------HHHHHHHHHHHcCCCCHHHHHHHHHhccCC
Confidence 44 35779999999999999999988864444444332222 556899999888778999999998766653
No 74
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.75 E-value=3.8e-17 Score=144.40 Aligned_cols=192 Identities=17% Similarity=0.169 Sum_probs=135.1
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh--------------CC-------------CccCCCHHHH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--------------LG-------------AKYQPSPDEV 124 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~--------------~g-------------~~~~~~~~~~ 124 (290)
++|+|||+|.||..+|..++..|++|++||++++..+...+ .+ +...++. +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 78999999999999999999999999999999877643211 11 1233455 56
Q ss_pred hhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc----CCcEEe-CccCCCCcccc
Q 022909 125 AASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLE-APVSGSKKPAE 199 (290)
Q Consensus 125 ~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~----~~~~~~-~p~~~~~~~~~ 199 (290)
++++|+|++++|.+.+.+..++ +++.+.+++++++++.+++ ....++.+.+... +.||++ +|+..... ..
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~--~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE-v~ 157 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVF--AELERNVSPETIIASNTSG--IMIAEIATALERKDRFIGMHWFNPAPVMKLIE-VV 157 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCcccEEEEecCCCcccCccEE-Ee
Confidence 7899999999998876555442 3455667888888765444 3445666666432 344444 23332211 11
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcC
Q 022909 200 DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFS 279 (290)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~ 279 (290)
.+.. .+++.++.+.++++.+|+.++++++.+.....+++.++ ++|++.+.++.-.++++++.++...+
T Consensus 158 ~g~~-----T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~-------~~ea~~~~~~g~a~~~~iD~~~~~~~ 225 (291)
T PRK06035 158 RAAL-----TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGW-------LLEAIRSFEIGIATIKDIDEMCKLAF 225 (291)
T ss_pred CCCC-----CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHH-------HHHHHHHHHcCCCCHHHHHHHHhhcC
Confidence 1111 36899999999999999999999887766666666554 38888887775578999999987665
Q ss_pred CC
Q 022909 280 FG 281 (290)
Q Consensus 280 ~g 281 (290)
+.
T Consensus 226 g~ 227 (291)
T PRK06035 226 GF 227 (291)
T ss_pred CC
Confidence 53
No 75
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.75 E-value=1.5e-16 Score=138.34 Aligned_cols=180 Identities=19% Similarity=0.309 Sum_probs=140.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc--hhhHHhCCCccC--CCH-HHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISLGAKYQ--PSP-DEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~--~~~~~~~g~~~~--~~~-~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
.++|+|+|+|.||+.+++.++..|+.|.+++++... .+...+.|+... .+. .+.+.++|+||+++|- ..+..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH
Confidence 589999999999999999999999988777666544 333333444321 222 5667789999999987 6677777
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCC--ccccCCceEEEecCC---HHHHHHHHH
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSK--KPAEDGQLIFLAAGD---KSLYNTVAP 219 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~--~~~~~~~~~~~~~~~---~~~~~~v~~ 219 (290)
+++.+.+++|++++|+++......+++.+.+.+.. +|++ ||++|++ .....+..++++..+ .+.++++.+
T Consensus 82 ---~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~ 157 (279)
T COG0287 82 ---KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKR 157 (279)
T ss_pred ---HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHH
Confidence 56677899999999999999888888888776655 8888 9999994 444566666676643 478899999
Q ss_pred HHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHH
Q 022909 220 LLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFS 255 (290)
Q Consensus 220 ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ 255 (290)
+++.+|.+++.+....+...+..++.+.+....++.
T Consensus 158 ~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~al~ 193 (279)
T COG0287 158 LWEALGARLVEMDAEEHDRVMAAVSHLPHAAALALA 193 (279)
T ss_pred HHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887765553333
No 76
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.75 E-value=3.1e-17 Score=141.40 Aligned_cols=207 Identities=14% Similarity=0.099 Sum_probs=136.5
Q ss_pred CCCeEEEEcccHhHHHHHHHHHHCCC---e-EEEEeCC-ccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHH
Q 022909 70 LPGRIGFLGMGIMGTPMAQNLLKAGC---D-VTVWNRT-KSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 70 ~~~~IgiiG~G~iG~~la~~l~~~g~---~-V~~~d~~-~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~ 143 (290)
..+||+|||+|+||.++++.+...|. + +.+++|+ +++.+.+.+ .++..+.+.+++++++|+|++++|. ...+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~-~~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP-SAHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH-HHHHH
Confidence 36899999999999999999988763 3 7778874 566666554 5676677888999999999999986 55677
Q ss_pred HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHHHHHHHHHHHHH
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDI 223 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~ 223 (290)
++ +++.+.++ +.++|+++.+-. .+.+.+.+.........+|.+..+.......+.+....+++..+.++++|+.
T Consensus 82 v~---~~l~~~~~-~~~vis~~~gi~--~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~ 155 (245)
T PRK07634 82 LL---AELSPLLS-NQLVVTVAAGIG--PSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKG 155 (245)
T ss_pred HH---HHHHhhcc-CCEEEEECCCCC--HHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHh
Confidence 66 23333444 578888865543 3356666543222223477655433222222222233567888999999999
Q ss_pred hCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 224 MGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 224 ~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+|..++ +.+.....+..+.. .-.++...+.|++ ..+.+.|++++++++++.+++.|+..+
T Consensus 156 ~G~~~~-~~e~~~~~~~a~~g-s~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~ 216 (245)
T PRK07634 156 IGTSQL-CTEEEVHQLTAVTG-SAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASM 216 (245)
T ss_pred CCCEEE-ECHHHcchHHhhhc-chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999775 54322222221111 1122224445555 578999999999999999999988654
No 77
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=1.2e-16 Score=141.07 Aligned_cols=209 Identities=17% Similarity=0.167 Sum_probs=161.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-------------------C-CccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-------------------G-AKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~aDi 130 (290)
.++|||||+|.||..+|..++..|++|+++|.++.+.+.+... | ++.+++.++ ++.||+
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~dv 87 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECDV 87 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCCE
Confidence 4899999999999999999999999999999998876665431 2 344555555 459999
Q ss_pred EEEEeCCh------hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc--CCc-----EEe-CccCCCCc
Q 022909 131 TFAMLADP------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GAS-----FLE-APVSGSKK 196 (290)
Q Consensus 131 vv~~~p~~------~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~--~~~-----~~~-~p~~~~~~ 196 (290)
+++|+|++ ++...+....+.+.+.|++|.++|--|+..|.+++++...+.+. |+. ++. +|.-..+.
T Consensus 88 ~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~PG 167 (436)
T COG0677 88 FIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPG 167 (436)
T ss_pred EEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccCCC
Confidence 99999975 23334443345667889999999999999999999999887764 332 222 55322111
Q ss_pred c---ccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHH
Q 022909 197 P---AEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVT 272 (290)
Q Consensus 197 ~---~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~ 272 (290)
. ......-++.|.+++..+.+..+++.+-..++.+.+...|++.|+..|.++..+ +..+|...+|+++|+|..++.
T Consensus 168 ~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwevI 247 (436)
T COG0677 168 NVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWEVI 247 (436)
T ss_pred chhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 1 111222356666788889999999998766888899999999999999999999 888888899999999999999
Q ss_pred HHHhhcCC
Q 022909 273 MFLQSFSF 280 (290)
Q Consensus 273 ~~i~~~~~ 280 (290)
++.+.-..
T Consensus 248 eaAnt~P~ 255 (436)
T COG0677 248 EAANTKPR 255 (436)
T ss_pred HHhccCCc
Confidence 99987644
No 78
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.75 E-value=1.2e-16 Score=145.01 Aligned_cols=203 Identities=18% Similarity=0.154 Sum_probs=149.3
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc----cCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK----YQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~----~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
++|+|||+|.||.++++.|+..|++|.+|++++++.......+.. ..++++++++++|+|++|+|. ..+..++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl-- 77 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALL-- 77 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHH--
Confidence 469999999999999999999999999999887654433332222 235677888999999999987 5677777
Q ss_pred cccccc-cCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc--------ccCCceEEEec---CCHHHH
Q 022909 148 KHGAAS-GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--------AEDGQLIFLAA---GDKSLY 214 (290)
Q Consensus 148 ~~~~~~-~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~--------~~~~~~~~~~~---~~~~~~ 214 (290)
+++.+ .++++.++.|+++.+....+.+.+.+ ....+|++ +|+.+.+.. ...+..++++. .+++.+
T Consensus 78 -~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~-~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~ 155 (359)
T PRK06545 78 -AELADLELKPGVIVTDVGSVKGAILAEAEALL-GDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAV 155 (359)
T ss_pred -HHHhhcCCCCCcEEEeCccccHHHHHHHHHhc-CCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHH
Confidence 34444 47899999999998876666665542 34567888 899887532 23444455554 467889
Q ss_pred HHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 215 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 215 ~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+.++++++.+|..++.+++..+.....+++.+-+.+. +++ +...+.+.+.+..+..+++.+...+
T Consensus 156 ~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia----~al--~~~~~~~~~~~~~la~~gfrd~tRi 220 (359)
T PRK06545 156 AELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILA----SSL--AARLAGEHPLALRLAAGGFRDITRI 220 (359)
T ss_pred HHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHH----HHH--HHhhccCchHHHhhhcccccCCccc
Confidence 9999999999999988988888888877776654333 332 5566777777778887777765443
No 79
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.75 E-value=9.3e-17 Score=141.24 Aligned_cols=193 Identities=15% Similarity=0.152 Sum_probs=136.3
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhh-----------HHhCC-------------CccCCCHHHHhhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----------LISLG-------------AKYQPSPDEVAAS 127 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~~ 127 (290)
++|||||+|.||..+|..++..|++|++||++++..+. +.+.| +..++++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 58999999999999999999999999999999987655 22222 2256677 45799
Q ss_pred CCeEEEEeCChhHHHHHhcccccccccC-CCCCEEEEecCCChhHHHHHHHHHHHc--CCcEEeC-ccCCCCccccCCce
Q 022909 128 CDVTFAMLADPESAMDVACGKHGAASGM-GPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLEA-PVSGSKKPAEDGQL 203 (290)
Q Consensus 128 aDivv~~~p~~~~~~~~~~~~~~~~~~~-~~~~~lin~s~~~~~~~~~l~~~l~~~--~~~~~~~-p~~~~~~~~~~~~~ 203 (290)
+|+|+.++|.+.+.+..+++ ++-+.. ++++++++.|++.+....+.....+++ ++||+++ |+.... .+
T Consensus 85 ~d~ViEav~E~~~~K~~l~~--~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lv------El 156 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFA--ELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLV------EL 156 (286)
T ss_pred CCEEEEecccCHHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceE------EE
Confidence 99999999999999988853 333444 789999888777666554432222223 4555552 232221 22
Q ss_pred EEEecCCHHHHHHHHHHHH-HhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCC
Q 022909 204 IFLAAGDKSLYNTVAPLLD-IMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSF 280 (290)
Q Consensus 204 ~~~~~~~~~~~~~v~~ll~-~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~ 280 (290)
+....++++.++.+.+++. .+|+.++.+++.. +..... ++. ..++|++.+.++...++++++.++...++
T Consensus 157 v~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~p-Gfi~nR---i~~---~~~~Ea~~ll~eGv~~~~dID~~~~~g~G 227 (286)
T PRK07819 157 VPTLVTSEATVARAEEFASDVLGKQVVRAQDRS-GFVVNA---LLV---PYLLSAIRMVESGFATAEDIDKAMVLGCA 227 (286)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCCceEecCCC-ChHHHH---HHH---HHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 3334568899999999988 5999999997622 222111 111 55689998888777889999999876544
No 80
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=1.7e-16 Score=140.55 Aligned_cols=206 Identities=16% Similarity=0.106 Sum_probs=165.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-------------------C-CccCCCHHHHhhcCCeE
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-------------------G-AKYQPSPDEVAASCDVT 131 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~aDiv 131 (290)
|||.|+|.|.+|...+..|+..||+|+.+|.++++.+.+.+. | +.++++.+++++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 689999999999999999999999999999999887766442 1 55678899999999999
Q ss_pred EEEeCChhH------HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcC----CcEEeCccCCCCccccC-
Q 022909 132 FAMLADPES------AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGSKKPAED- 200 (290)
Q Consensus 132 v~~~p~~~~------~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~----~~~~~~p~~~~~~~~~~- 200 (290)
++++|+|.. ++.+....+++.+.++..+++|+-|+.++...+.+.+.+.... ..++..|.|-.|..+..
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~Av~D 160 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSAVYD 160 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcchhhh
Confidence 999997743 4444333356777888889999999999999999888777654 34777888776655432
Q ss_pred --CceEEEecCCH-HHHHHHHHHHHHh--CCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHH
Q 022909 201 --GQLIFLAAGDK-SLYNTVAPLLDIM--GKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMF 274 (290)
Q Consensus 201 --~~~~~~~~~~~-~~~~~v~~ll~~~--G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~ 274 (290)
.+--+++|... .+.+.+++++..+ ...++...+...+++.|+.+|.+.+.- +.++|...+|++.|+|.+++.+.
T Consensus 161 ~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V~~g 240 (414)
T COG1004 161 FLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQVAEG 240 (414)
T ss_pred ccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 23345666544 4678888888776 445777888899999999999998888 99999999999999999999998
Q ss_pred Hhh
Q 022909 275 LQS 277 (290)
Q Consensus 275 i~~ 277 (290)
+..
T Consensus 241 IGl 243 (414)
T COG1004 241 IGL 243 (414)
T ss_pred cCC
Confidence 854
No 81
>PRK07680 late competence protein ComER; Validated
Probab=99.74 E-value=6.6e-17 Score=141.59 Aligned_cols=202 Identities=16% Similarity=0.190 Sum_probs=135.0
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC----eEEEEeCCccchhhHHh-C-CCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS-L-GAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~----~V~~~d~~~~~~~~~~~-~-g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
|+|+|||+|+||.++++.|...|. +|.+|+|++++.+.+.+ . ++....+..++++++|+|++++| +..+..++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH
Confidence 479999999999999999998883 79999999887766655 2 56667788888999999999996 56677877
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEec--CCHHHHHHHHHHHHH
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI 223 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~ll~~ 223 (290)
+++.+.+++++++|+++.+- ..+.+.+.+....+++ .|... .....+...+..+ .+++..+.++++|+.
T Consensus 80 ---~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~--~p~~~--~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~ 150 (273)
T PRK07680 80 ---QKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARI--IPSIT--NRALSGASLFTFGSRCSEEDQQKLERLFSN 150 (273)
T ss_pred ---HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEE--CCChH--HHHhhccEEEeeCCCCCHHHHHHHHHHHHc
Confidence 44556778889999997543 4556666654222223 33221 2233455544444 355778899999999
Q ss_pred hCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHH-CCCCHHHHHHHHhhcCCCCccc
Q 022909 224 MGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEF-VDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 224 ~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~-~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+|. ++.+.+........+... -.++++.+.+++ ..+.+ .|++++++.+++.+++.|+..+
T Consensus 151 ~G~-~~~i~e~~~~~~~~l~gs-~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l 212 (273)
T PRK07680 151 IST-PLVIEEDITRVSSDIVSC-GPAFFSYLLQRFIDAAVEETNISKEEATTLASEMLIGMGKL 212 (273)
T ss_pred CCC-EEEEChHhcchhhhhccc-hHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 996 445553211111111111 111112223332 22344 8999999999999999988654
No 82
>PLN02712 arogenate dehydrogenase
Probab=99.74 E-value=2.4e-16 Score=152.53 Aligned_cols=203 Identities=17% Similarity=0.194 Sum_probs=144.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhh-cCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|||||+|.||+.+|+.|..+|++|.+|||+... +...+.|+....++++++. ++|+|++|+|. ..+..++ .
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi--~- 443 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL--K- 443 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH--H-
Confidence 799999999999999999999999999999998643 4445567766778888876 58999999985 7788887 2
Q ss_pred ccc-ccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEE-eCccCCCCccc-c-CCceE----EEecCCH---HHHHHHH
Q 022909 150 GAA-SGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKPA-E-DGQLI----FLAAGDK---SLYNTVA 218 (290)
Q Consensus 150 ~~~-~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~-~~p~~~~~~~~-~-~~~~~----~~~~~~~---~~~~~v~ 218 (290)
++. ..++++++++|+++++....+.+.+.+. .+..|+ .+|+++.+... + ..... ..++++. +..+.+.
T Consensus 444 ~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~-~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~ 522 (667)
T PLN02712 444 SLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP-QDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFL 522 (667)
T ss_pred HHHHhcCCCCcEEEECCCccHHHHHHHHHhcc-CCCceEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHHHH
Confidence 233 3688999999999988655555555554 356788 49999987541 1 11111 1223333 3445566
Q ss_pred HHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------HHHHHHHHhhcCCCCcccc
Q 022909 219 PLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFL--------INTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 219 ~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~--------~~~~~~~i~~~~~gs~~~~ 286 (290)
++++.+|.+++.+....+...+..++.+.+ .++.+ ..+.|++ .+++..++...+..++.++
T Consensus 523 ~l~~~lGa~vv~ms~eeHD~~~A~vShLpH----lla~~---L~~~~~~~~~~~~~gfr~l~~Li~Ria~~~p~l~ 591 (667)
T PLN02712 523 DIFAREGCRMVEMSCAEHDWHAAGSQFITH----TMGRL---LEKLGLESTPINTKGYETLLNLVENTAGDSFDLY 591 (667)
T ss_pred HHHHHcCCEEEEeCHHHHHHHHHHHHHHHH----HHHHH---HHHCCCcccccccHHHHHHHHHHHhhcCCCHHHH
Confidence 999999999999988777766654443332 22222 2444554 7888888888888887665
No 83
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.72 E-value=1.7e-16 Score=138.69 Aligned_cols=200 Identities=15% Similarity=0.116 Sum_probs=155.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--------------CCccCCCHHHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------GAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--------------g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
++|+|||.|.+|.++|+.|...|++|.+|.|+++..+++.+. ++..++|+.++++++|+|++++|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 789999999999999999999999999999998776665542 244568999999999999999987
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEecCCChh-----HHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHH
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGD-----TSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKS 212 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~-----~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 212 (290)
+.++.++ +.+...++++..+|+++-|--. ..+.+.+.+....+.+++.|.+..+........+.+.+.+++
T Consensus 82 -~~~r~v~---~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~~ 157 (329)
T COG0240 82 -QALREVL---RQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQE 157 (329)
T ss_pred -HHHHHHH---HHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCHH
Confidence 7788887 4445678899999999844322 223334444434477888999988887777777778888899
Q ss_pred HHHHHHHHHHHhCCcEEEeCCc-----------------chHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHH
Q 022909 213 LYNTVAPLLDIMGKSRFYLGDV-----------------GNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMF 274 (290)
Q Consensus 213 ~~~~v~~ll~~~G~~~~~~~~~-----------------g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~ 274 (290)
..++++++|+.--++++...|. |....+.+..|...+++ .+++|..+++...|-+++++..+
T Consensus 158 ~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gL 237 (329)
T COG0240 158 AAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGL 237 (329)
T ss_pred HHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhccc
Confidence 9999999999877777766552 33333455567778888 99999999999999999876654
Q ss_pred H
Q 022909 275 L 275 (290)
Q Consensus 275 i 275 (290)
-
T Consensus 238 s 238 (329)
T COG0240 238 S 238 (329)
T ss_pred c
Confidence 3
No 84
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.72 E-value=1.3e-15 Score=135.54 Aligned_cols=176 Identities=16% Similarity=0.287 Sum_probs=131.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHhCCC--ccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGA--KYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~~g~--~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
.++|+|||+|.||..+++.|...|+ +|.+|||++++.+.+.+.|. ....+.++.++++|+|++++|. ..+..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~-~~~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPV-GASGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCH-HHHHHHH-
Confidence 4789999999999999999999885 89999999887777666654 2345778888999999999987 4445555
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc-c-------cCCceEEEe---cCCHHHH
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-A-------EDGQLIFLA---AGDKSLY 214 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~-~-------~~~~~~~~~---~~~~~~~ 214 (290)
+++.+.++++.+++++++......+++.+.+. .++++++ +|+.+++.. . ..+..++++ +++++.+
T Consensus 84 --~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~-~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~ 160 (307)
T PRK07502 84 --AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLP-EGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAV 160 (307)
T ss_pred --HHHHhhCCCCCEEEeCccchHHHHHHHHHhCC-CCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHH
Confidence 34556788999999998877655555555443 3567888 699876531 1 123333343 3567889
Q ss_pred HHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH
Q 022909 215 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS 251 (290)
Q Consensus 215 ~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~ 251 (290)
+.+.++++.+|.+++.+++..+...+.+++...+.+.
T Consensus 161 ~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a 197 (307)
T PRK07502 161 ARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIA 197 (307)
T ss_pred HHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHH
Confidence 9999999999999999988888888777776654433
No 85
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.67 E-value=2.5e-14 Score=124.22 Aligned_cols=146 Identities=13% Similarity=0.131 Sum_probs=109.4
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccch-----hhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCC
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKC-----DPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGP 157 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~-----~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~ 157 (290)
|..+|++|.+.|++|++|||++++. +.+.+.|+..+++..++++++|+|++++|.+..++.++ ..+++.+++
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl---~GLaa~L~~ 108 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA---RTIIEHVPE 108 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH---HHHHhcCCC
Confidence 7899999999999999999987643 34677888889999999999999999999999898887 357888999
Q ss_pred CCEEEEecCCChhHHHHHHHH-HH--HcCCcEEe-CccCCCCccccCCceEEEec--------CCHHHHHHHHHHHHHhC
Q 022909 158 GKGYVDVSTVDGDTSKLINGH-IK--ATGASFLE-APVSGSKKPAEDGQLIFLAA--------GDKSLYNTVAPLLDIMG 225 (290)
Q Consensus 158 ~~~lin~s~~~~~~~~~l~~~-l~--~~~~~~~~-~p~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~ll~~~G 225 (290)
|+++||+|+.++.......+. |+ ++.+.+.+ ||-. .|........++.+ .+++.++++.++.+..+
T Consensus 109 GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~--vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~ 186 (341)
T TIGR01724 109 NAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAA--VPGTPQHGHYVIGGKPTAGKEMATEEQISKCVELAKSTG 186 (341)
T ss_pred CCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCC--CCCCCCCceeeeccccccccccCCHHHHHHHHHHHHHhC
Confidence 999999999999877655544 33 33444444 4422 22222222222222 25688899999999999
Q ss_pred CcEEEeCC
Q 022909 226 KSRFYLGD 233 (290)
Q Consensus 226 ~~~~~~~~ 233 (290)
+.+|.+..
T Consensus 187 ~~~~~~pa 194 (341)
T TIGR01724 187 KKAYVVPA 194 (341)
T ss_pred CCeeecch
Confidence 99887653
No 86
>PLN02712 arogenate dehydrogenase
Probab=99.67 E-value=5.5e-15 Score=143.19 Aligned_cols=173 Identities=16% Similarity=0.194 Sum_probs=130.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHh-hcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
.++|||||+|.||+.+++.|..+|++|.+||++... ....+.|+....+.++++ +++|+|++|+|. ..+..++ +
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl---~ 126 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVL---K 126 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHH---H
Confidence 589999999999999999999999999999998543 445557777777888866 469999999985 6788887 2
Q ss_pred ccc-ccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc--ccCCceEEEe----cCCH---HHHHHHH
Q 022909 150 GAA-SGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--AEDGQLIFLA----AGDK---SLYNTVA 218 (290)
Q Consensus 150 ~~~-~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~--~~~~~~~~~~----~~~~---~~~~~v~ 218 (290)
++. ..++++++|+|+++......+.+.+.+.. +..|+. ||++|++.. ...+...++. +.++ +..+.+.
T Consensus 127 ~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~-~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (667)
T PLN02712 127 SLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE-DFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFL 205 (667)
T ss_pred hhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC-CCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHH
Confidence 332 56899999999998886555556655543 456777 999998732 2233333333 2222 3456677
Q ss_pred HHHHHhCCcEEEeCCcchHHHHHHHHHHHHH
Q 022909 219 PLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249 (290)
Q Consensus 219 ~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~ 249 (290)
++++.+|.+++.+....+..++..++.+-+.
T Consensus 206 ~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~ 236 (667)
T PLN02712 206 EVFEREGCKMVEMSCTEHDKYAAESQFITHT 236 (667)
T ss_pred HHHHHcCCEEEEeCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988888888887766543
No 87
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.67 E-value=9.9e-16 Score=134.29 Aligned_cols=203 Identities=15% Similarity=0.170 Sum_probs=135.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC----CeEEEEeCCcc-chhhHHh-C-CCccCCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKS-KCDPLIS-L-GAKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g----~~V~~~d~~~~-~~~~~~~-~-g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
++|+|||+|+||.++++.|...| ++|.+|+|+++ +.+.+.. . +.....+..++++++|+|++++| ++....+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence 57999999999999999999888 68999998653 2333333 2 23445678888999999999998 4667777
Q ss_pred hcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEec--CCHHHHHHHHHHH
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLL 221 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~ll 221 (290)
+ +++.+.++++.++|++..| ...+.|.+.+.. .+++. +|+... ..+.+...+..+ -+++..+.++++|
T Consensus 81 l---~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~--~~vvR~MPN~~~--~~g~g~t~~~~~~~~~~~~~~~v~~l~ 151 (277)
T PRK06928 81 L---KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPG--LQVSRLIPSLTS--AVGVGTSLVAHAETVNEANKSRLEETL 151 (277)
T ss_pred H---HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC--CCEEEEeCccHH--HHhhhcEEEecCCCCCHHHHHHHHHHH
Confidence 7 3455667788888888655 344467676642 24444 565432 234454444333 2457788999999
Q ss_pred HHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHC-CCCHHHHHHHHhhcCCCCcccc
Q 022909 222 DIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFV-DFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 222 ~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~-G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
+.+|..+ .+.+.....+. .+...--++++.+.|++ ..+.+. |++++++.+++.+++.|+..+.
T Consensus 152 ~~~G~~~-~v~E~~~d~~t-al~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~~G~a~l~ 216 (277)
T PRK06928 152 SHFSHVM-TIREENMDIAS-NLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALAGTGKLL 216 (277)
T ss_pred HhCCCEE-EEchhhCceee-eeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999955 44431111111 11111122234555666 467888 7999999999999999987653
No 88
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.67 E-value=9e-15 Score=128.71 Aligned_cols=193 Identities=16% Similarity=0.101 Sum_probs=130.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhh-----------HHhCC-------------CccCCCHHHHhhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----------LISLG-------------AKYQPSPDEVAAS 127 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~~ 127 (290)
++|+|||+|.||..+|..++..|++|+++|+++++.+. +.+.| +..+++.++ +++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hcc
Confidence 68999999999999999999999999999999887642 22232 233556654 789
Q ss_pred CCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEE
Q 022909 128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFL 206 (290)
Q Consensus 128 aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~ 206 (290)
||+|++++|.+.+.+..++ +++.+.++++++++..+++ .....+.+.+... -+++. +|+...+.... -.++.-
T Consensus 83 aDlVi~av~e~~~~k~~~~--~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~~-~r~ig~h~~~P~~~~~~-vev~~g 156 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIF--AQLDEIAKPEAILATNTSS--LSITELAAATKRP-DKVIGMHFFNPVPVMKL-VEIIRG 156 (282)
T ss_pred CCeeeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCC--CCHHHHHHhhCCC-cceEEeeccCCcccCcc-EEEeCC
Confidence 9999999998777774442 4466678889888443333 3333666766433 34444 44432221110 011111
Q ss_pred ecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcC
Q 022909 207 AAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFS 279 (290)
Q Consensus 207 ~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~ 279 (290)
.+.+++..+.+.++++.+|+.++.+++.. +. +.| -++ ..++|+..+.++.-.++++++.++...+
T Consensus 157 ~~t~~e~~~~~~~l~~~lGk~pv~~~d~~-g~----i~~---Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~ 222 (282)
T PRK05808 157 LATSDATHEAVEALAKKIGKTPVEVKNAP-GF----VVN---RILIPMINEAIFVLAEGVATAEDIDEGMKLGC 222 (282)
T ss_pred CCCCHHHHHHHHHHHHHcCCeeEEecCcc-Ch----HHH---HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 23568999999999999999999997533 22 222 112 5568998888776688999999997443
No 89
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.65 E-value=1e-14 Score=144.44 Aligned_cols=205 Identities=15% Similarity=0.166 Sum_probs=149.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC--CeEEEEeCCccchhhHHhCCCc--cCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISLGAK--YQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g--~~V~~~d~~~~~~~~~~~~g~~--~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
-++|+|||+|.||.++++.+...| ++|++||+++++.+.+.+.|.. ...+.+++++++|+|++++|. ..+..++
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~-~~~~~vl- 80 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPV-LAMEKVL- 80 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCH-HHHHHHH-
Confidence 478999999999999999999988 4899999998887776666654 445678889999999999986 4677776
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccc--------cCCceEEEec---CCHHHH
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPA--------EDGQLIFLAA---GDKSLY 214 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~--------~~~~~~~~~~---~~~~~~ 214 (290)
+++.+.++++.+++++++.+....+.+.+.+....++++. +|+++++... ..+..++++. .+++..
T Consensus 81 --~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~ 158 (735)
T PRK14806 81 --ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAAL 158 (735)
T ss_pred --HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHH
Confidence 3455677889999999998877777777766544566665 8988765421 1233333433 456788
Q ss_pred HHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCc
Q 022909 215 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNL 283 (290)
Q Consensus 215 ~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~ 283 (290)
+.+.++++.+|..++.+++..+.....+++..-+.+...+.|++ .+.|.. +++.++..+.+.+..
T Consensus 159 ~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l---~~~~~~-~~~~~~a~~~f~~~t 223 (735)
T PRK14806 159 ARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQL---ANREDN-LDIFRYAAGGFRDFT 223 (735)
T ss_pred HHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHH---hhcCCh-hHHHhhhccchhccc
Confidence 99999999999989888887777777777766654456666764 344433 345566655554443
No 90
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.65 E-value=1.7e-15 Score=136.88 Aligned_cols=188 Identities=20% Similarity=0.252 Sum_probs=131.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-----------------cCCCHHHHhhcCCeEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-----------------YQPSPDEVAASCDVTFA 133 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-----------------~~~~~~~~~~~aDivv~ 133 (290)
.|+|+|||+|.||..+|..|...|++|.+++|++. .+.+.+.|.. ..++. +.++.+|+|++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil 79 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLV 79 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEE
Confidence 57899999999999999999999999999999753 3444444432 12344 56788999999
Q ss_pred EeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeC--c---cCCCCcc---ccCCceEE
Q 022909 134 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA--P---VSGSKKP---AEDGQLIF 205 (290)
Q Consensus 134 ~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~--p---~~~~~~~---~~~~~~~~ 205 (290)
++|. .....++ +++.+.++++++++++..+ ....+.+.+.+.+. +++.+ + +..++.. ...+.+.+
T Consensus 80 ~vk~-~~~~~~~---~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~--~~~~g~~~~~~~~~~pg~~~~~~~g~l~~ 152 (341)
T PRK08229 80 TVKS-AATADAA---AALAGHARPGAVVVSFQNG-VRNADVLRAALPGA--TVLAGMVPFNVISRGPGAFHQGTSGALAI 152 (341)
T ss_pred EecC-cchHHHH---HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCC--cEEEEEEEEEEEecCCceEEecCCCceEe
Confidence 9986 4456666 4456677888998888654 33445566665432 23332 2 1212111 12334332
Q ss_pred EecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHH--------------------H-HHHHHHHHHHHHC
Q 022909 206 LAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGR--------------------S-CTFSYSFLTLEFV 264 (290)
Q Consensus 206 ~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~--------------------~-~~~~ea~~l~~~~ 264 (290)
+ ..+.++.+.++|+..|.++++.++.+...|.|++.|.+... + ..+.|++.++++.
T Consensus 153 --~-~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~ 229 (341)
T PRK08229 153 --E-ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAA 229 (341)
T ss_pred --c-CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHc
Confidence 2 23456889999999999999999999999999998853211 2 5689999999999
Q ss_pred CCCHHH
Q 022909 265 DFLINT 270 (290)
Q Consensus 265 G~~~~~ 270 (290)
|++++.
T Consensus 230 Gi~~~~ 235 (341)
T PRK08229 230 GIRPAR 235 (341)
T ss_pred CCCccc
Confidence 998644
No 91
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.65 E-value=1.4e-14 Score=128.29 Aligned_cols=192 Identities=17% Similarity=0.123 Sum_probs=127.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccch-hhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC-DPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~-~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|||||+|+||+++|+.|+.+|++|.+++++..+. +...+.|+... +.+++++++|+|++++|.+.. ..++ ++
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~--~~ 92 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVY--EE 92 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHH--HH
Confidence 7999999999999999999999999999888765443 33344677655 889999999999999997554 6776 45
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc-----ccCCceEEE-ecCC--HHHHHHHHHH
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-----AEDGQLIFL-AAGD--KSLYNTVAPL 220 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~-----~~~~~~~~~-~~~~--~~~~~~v~~l 220 (290)
++++.++++++++ .+.|-.... +.... ..++.++. +|....... .+.+.+.++ +..+ .++.+.+..+
T Consensus 93 ~I~~~Lk~g~iL~-~a~G~~i~~--~~~~p-~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l 168 (330)
T PRK05479 93 EIEPNLKEGAALA-FAHGFNIHF--GQIVP-PADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAY 168 (330)
T ss_pred HHHhcCCCCCEEE-ECCCCChhh--ceecc-CCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHH
Confidence 6788899999884 444432221 11111 23444444 565544311 344555555 4444 7889999999
Q ss_pred HHHhCCcEE-----EeCCcc-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHH
Q 022909 221 LDIMGKSRF-----YLGDVG-NGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVT 272 (290)
Q Consensus 221 l~~~G~~~~-----~~~~~g-~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~ 272 (290)
+..+|.... ...+.. ...+-. +..+.... ..+..+....+..|.+++.++
T Consensus 169 ~~aiG~~~~g~~~ttf~~e~~~dl~ge--q~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay 225 (330)
T PRK05479 169 AKGIGGTRAGVIETTFKEETETDLFGE--QAVLCGGLTELIKAGFETLVEAGYQPEMAY 225 (330)
T ss_pred HHHcCCCccceeeeeecccccccchhh--HHHHhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 999998754 222222 222211 22233333 444666677899999999876
No 92
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.64 E-value=6.7e-15 Score=127.91 Aligned_cols=197 Identities=16% Similarity=0.199 Sum_probs=126.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC----eEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~----~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
.|||+|||+|+||.++++.|...+. ++++++|++++. +.....+..++++++|+|++++| +..++.++
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl- 74 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVL- 74 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence 4789999999999999999998762 489999876542 23445677788899999999986 57788888
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEec--CCHHHHHHHHHHHHH
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI 223 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~ll~~ 223 (290)
+++.+.++++.++..++... .+.+.+.+.... .++. .|... .....+...+... .+++..+.++++|+.
T Consensus 75 --~~i~~~l~~~~iIS~~aGi~---~~~l~~~~~~~~-~vvr~mPn~p--~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~ 146 (260)
T PTZ00431 75 --LEIKPYLGSKLLISICGGLN---LKTLEEMVGVEA-KIVRVMPNTP--SLVGQGSLVFCANNNVDSTDKKKVIDIFSA 146 (260)
T ss_pred --HHHHhhccCCEEEEEeCCcc---HHHHHHHcCCCC-eEEEECCCch--hHhcceeEEEEeCCCCCHHHHHHHHHHHHh
Confidence 34455555544443333333 334444443221 1222 34332 2223333333322 245778899999999
Q ss_pred hCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 224 MGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 224 ~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+|... .+.+.....+.. +...--++.+.+.|++ ..+.+.|++.+++++++.+++.|+..+
T Consensus 147 ~G~~~-~v~E~~~d~~ta-~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~G~a~l 207 (260)
T PTZ00431 147 CGIIQ-EIKEKDMDIATA-ISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHM 207 (260)
T ss_pred CCcEE-EEChHHcchhhh-hcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99955 454432222222 2122223334555666 578999999999999999999998765
No 93
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.63 E-value=4.7e-15 Score=131.45 Aligned_cols=203 Identities=12% Similarity=0.028 Sum_probs=133.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCC-ccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT-KSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~-~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|+|||+|+||.++++.|..+|++|+++++. .++.+.+.+.|+... +..++++++|+|++++|.......+. +
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~---~ 78 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYE---A 78 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHH---H
Confidence 799999999999999999999999998876554 344455556677654 68888999999999999753444333 4
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc-----ccCCceEEE-ecC--CHHHHHHHHHH
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-----AEDGQLIFL-AAG--DKSLYNTVAPL 220 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~-----~~~~~~~~~-~~~--~~~~~~~v~~l 220 (290)
++.+.++++. +|.++.|-.. ..+...+.. +..++- +|....... .+.+...++ +.. +.++.+.+..+
T Consensus 79 ei~~~l~~g~-iVs~aaG~~i--~~~~~~~~~-~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~ 154 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGFNI--HFVQIVPPK-DVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAY 154 (314)
T ss_pred HHHhhCCCCc-EEEEeCCccH--hhccccCCC-CCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHH
Confidence 5667788886 5666555443 333334432 344444 777654321 144554443 332 46788999999
Q ss_pred HHHhCCc-------EE--EeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 221 LDIMGKS-------RF--YLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 221 l~~~G~~-------~~--~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+..+|.. .+ .+.+.-.+... .+.....+++..+.|++ .+.|++++.++.++.++++|+..+
T Consensus 155 ~~~iG~~~~~~~~t~f~~e~~edl~~~~t-~l~Gs~pa~v~~~~eal---v~~G~~~e~A~~~~~~~~~g~~~l 224 (314)
T TIGR00465 155 AKAIGGGRAGVLETTFKEETESDLFGEQA-VLCGGLTALIKAGFDTL---VEAGYQPELAYFETVHELKLIVDL 224 (314)
T ss_pred HHHcCCCccceeechhHhhhhHHhcCcch-hHHhHHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999986 31 12211111111 12222333344445665 899999999999999999887654
No 94
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.63 E-value=4.4e-14 Score=127.46 Aligned_cols=162 Identities=16% Similarity=0.221 Sum_probs=124.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHH-CCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLK-AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~-~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
.++|+|||. |.||+.+|+.|+. +|++|+++|+..+ ...++++.++++|+|++|+|. ..+..++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv-~~~~~~l--- 68 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPI-RHTAALI--- 68 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCH-HHHHHHH---
Confidence 689999999 9999999999996 5889999998521 123677889999999999987 5566776
Q ss_pred ccccc---cCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc-ccCCceEEEecCC-HHHHHHHHHHHH
Q 022909 149 HGAAS---GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-AEDGQLIFLAAGD-KSLYNTVAPLLD 222 (290)
Q Consensus 149 ~~~~~---~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~-~~~~~~~~~~~~~-~~~~~~v~~ll~ 222 (290)
+++.+ .+++++++.|+++.+....+.+ ...+..|++ ||++|++.. ...+..++++... .+..+.++++++
T Consensus 69 ~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~----~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~ 144 (370)
T PRK08818 69 EEYVALAGGRAAGQLWLDVTSIKQAPVAAM----LASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCS 144 (370)
T ss_pred HHHhhhhcCCCCCeEEEECCCCcHHHHHHH----HhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHH
Confidence 33333 4799999999999886554444 233567888 999998743 3456666666543 455788999999
Q ss_pred HhCCcEEEeCCcchHHHHHHHHHHHHHHH
Q 022909 223 IMGKSRFYLGDVGNGAAMKLVVNMIMGRS 251 (290)
Q Consensus 223 ~~G~~~~~~~~~g~a~~~k~~~n~~~~~~ 251 (290)
.+|..++.+....+...+..++.+-+...
T Consensus 145 ~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~ 173 (370)
T PRK08818 145 ALQAECVYATPEHHDRVMALVQAMVHATH 173 (370)
T ss_pred HcCCEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888875554443
No 95
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.62 E-value=1.2e-14 Score=119.23 Aligned_cols=167 Identities=22% Similarity=0.271 Sum_probs=112.1
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc-hhhHHh-CC-CccCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLIS-LG-AKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~-~~~~~~-~g-~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
|+++|+|+|+||..+|++|...|++|.+-+|+.++ .+...+ .+ .....+.+++.+.+|+|++++|. .....++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~-~a~~~v~--- 77 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPF-EAIPDVL--- 77 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccH-HHHHhHH---
Confidence 88999999999999999999999999988665544 333333 12 22345788999999999999998 4555665
Q ss_pred ccccccCCCCCEEEEecCC---Ch------------hHHHHHHHHHHHcCC----cEEeCccCCCCccccCCceEEEecC
Q 022909 149 HGAASGMGPGKGYVDVSTV---DG------------DTSKLINGHIKATGA----SFLEAPVSGSKKPAEDGQLIFLAAG 209 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~---~~------------~~~~~l~~~l~~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~ 209 (290)
+++.+.+. |+++||++.. .. ...+.+.+.+++..+ +-+....+..........-+++++.
T Consensus 78 ~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~vagD 156 (211)
T COG2085 78 AELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVAGD 156 (211)
T ss_pred HHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEecC
Confidence 45566665 8999999764 11 112333444433211 1111222222222223444667778
Q ss_pred CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHH
Q 022909 210 DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV 243 (290)
Q Consensus 210 ~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~ 243 (290)
|.++.+.+.++.+.+|+.++.+|+...+..+.-+
T Consensus 157 D~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le~~ 190 (211)
T COG2085 157 DAEAKAVVAELAEDIGFRPLDAGPLENARILEPG 190 (211)
T ss_pred cHHHHHHHHHHHHhcCcceeeccccccccccccc
Confidence 8899999999999999999999987666554433
No 96
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.61 E-value=2.3e-14 Score=125.41 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=133.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----------C-------------CCccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L-------------GAKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~ 126 (290)
-++|+|||.|.||..+|..++..|++|.++|++++..+.... . .+....++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 589999999999999999999978999999999665333211 1 123344444 678
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEE
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 206 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~ 206 (290)
+||+|+.++|.+.++++-++ +++-...+|++++-..+++-+ ..++.+.+++. -+++....|.++.. -+++-+
T Consensus 82 ~~DlVIEAv~E~levK~~vf--~~l~~~~~~~aIlASNTSsl~--it~ia~~~~rp-er~iG~HFfNP~~~---m~LVEv 153 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVF--AELEALAKPDAILASNTSSLS--ITELAEALKRP-ERFIGLHFFNPVPL---MPLVEV 153 (307)
T ss_pred cCCEEEEeccccHHHHHHHH--HHHHhhcCCCcEEeeccCCCC--HHHHHHHhCCc-hhEEEEeccCCCCc---ceeEEE
Confidence 99999999999999988774 345566788988843333322 23555665332 23444333333322 123333
Q ss_pred ecC---CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCC
Q 022909 207 AAG---DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGN 282 (290)
Q Consensus 207 ~~~---~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs 282 (290)
+.+ +++.++.+.++.+.+|+.++.+.+.. + ++.|-+ +...+.|+..+..+...++++++.++.+.++--
T Consensus 154 I~g~~T~~e~~~~~~~~~~~igK~~vv~~D~p-G----Fi~NRi--l~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~p 225 (307)
T COG1250 154 IRGEKTSDETVERVVEFAKKIGKTPVVVKDVP-G----FIVNRL--LAALLNEAIRLLEEGVATPEEIDAAMRQGLGLP 225 (307)
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCCCEeecCCC-c----eehHhH--HHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCC
Confidence 333 57999999999999999885555522 1 222211 115668999998998899999999999877654
No 97
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.60 E-value=2.3e-14 Score=129.33 Aligned_cols=199 Identities=13% Similarity=0.039 Sum_probs=145.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-------CeEEEEeCCccc-----hhhHHhC--------------CCccCCCHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-------CDVTVWNRTKSK-----CDPLISL--------------GAKYQPSPDEV 124 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-------~~V~~~d~~~~~-----~~~~~~~--------------g~~~~~~~~~~ 124 (290)
.++|+|||.|.+|.++|..|...| ++|.+|.|+++. .+.+.+. ++..+++++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 578999999999999999999876 799999998752 3333321 23446788899
Q ss_pred hhcCCeEEEEeCChhHHHHHhcccccccc--cCCCCCEEEEecCCChh-------HHHHHHHHHHHcCCcEEeCccCCCC
Q 022909 125 AASCDVTFAMLADPESAMDVACGKHGAAS--GMGPGKGYVDVSTVDGD-------TSKLINGHIKATGASFLEAPVSGSK 195 (290)
Q Consensus 125 ~~~aDivv~~~p~~~~~~~~~~~~~~~~~--~~~~~~~lin~s~~~~~-------~~~~l~~~l~~~~~~~~~~p~~~~~ 195 (290)
++++|+|++++|. +..+.++ +++.+ .+++++++|+++-|-.. ..+.+.+.+. ..+.++..|.+..+
T Consensus 91 v~~aDiIvlAVPs-q~l~~vl---~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~-~~~~~LsGPs~A~E 165 (365)
T PTZ00345 91 VEDADLLIFVIPH-QFLESVL---SQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELG-IPCCALSGANVAND 165 (365)
T ss_pred HhcCCEEEEEcCh-HHHHHHH---HHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhC-CCeEEEECCCHHHH
Confidence 9999999999986 7788887 44445 56777789988744322 1233333442 34566788988877
Q ss_pred ccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCc-----------------chHHHHHHHHHHHHHHH-HHHHHH
Q 022909 196 KPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDV-----------------GNGAAMKLVVNMIMGRS-CTFSYS 257 (290)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~-----------------g~a~~~k~~~n~~~~~~-~~~~ea 257 (290)
........+.+.+.+.+..+.++++|+.--++++...|. |....+.+..|...+++ .++.|.
T Consensus 166 va~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em 245 (365)
T PTZ00345 166 VAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEM 245 (365)
T ss_pred HHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 776677777777788888889999998777777765552 22222334457778888 999999
Q ss_pred HHHHHHCC--CCHHHHHHH
Q 022909 258 FLTLEFVD--FLINTVTMF 274 (290)
Q Consensus 258 ~~l~~~~G--~~~~~~~~~ 274 (290)
.++++..| .+++++..+
T Consensus 246 ~~l~~a~g~~~~~~T~~gl 264 (365)
T PTZ00345 246 KLFGKIFFPNVMDETFFES 264 (365)
T ss_pred HHHHHHhCCCCCccchhcc
Confidence 99999997 488888764
No 98
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.60 E-value=2.7e-14 Score=127.09 Aligned_cols=191 Identities=16% Similarity=0.095 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccch-------hhH-----------HhC-------------CCccCCC--HHHHhhcC
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKC-------DPL-----------ISL-------------GAKYQPS--PDEVAASC 128 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~-------~~~-----------~~~-------------g~~~~~~--~~~~~~~a 128 (290)
||..||..++..|++|.+||++++.. +.. .+. .+....+ ..+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 68999999999999999999998531 111 111 1233333 55788999
Q ss_pred CeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHH----cCCcEEeCccCCCCccccCCceE
Q 022909 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKKPAEDGQLI 204 (290)
Q Consensus 129 Divv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~----~~~~~~~~p~~~~~~~~~~~~~~ 204 (290)
|+|+.++|.+.+++..+++ ++.+.+++++++. |+.+.....++.+.++. .++||+++|...+......+
T Consensus 81 D~ViEav~E~~~~K~~~f~--~l~~~~~~~~ila--SntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g--- 153 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALR--WLGRHVDADAIIA--STTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPS--- 153 (314)
T ss_pred CEEEECCcCCHHHHHHHHH--HHHhhCCCCcEEE--EccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCC---
Confidence 9999999999999988853 4667789999884 45555566677777743 25666665533222111111
Q ss_pred EEecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCc
Q 022909 205 FLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNL 283 (290)
Q Consensus 205 ~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~ 283 (290)
.+++++.++.+.++++.+|+.++++++.+ +. ++..+. ..++|++.++++.|++++++++++....+..+
T Consensus 154 --~~t~~e~~~~~~~ll~~lGk~~v~v~d~~-Gf-------i~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~ 223 (314)
T PRK08269 154 --DATDPAVVDRLAALLERIGKVPVVCGPSP-GY-------IVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRF 223 (314)
T ss_pred --CCCCHHHHHHHHHHHHHcCCcEEEecCCC-Cc-------chHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCc
Confidence 13578999999999999999999998754 32 122233 77899999999999999999999998877655
Q ss_pred cccCCC
Q 022909 284 QYDGNF 289 (290)
Q Consensus 284 ~~~~~~ 289 (290)
...|+|
T Consensus 224 ~~~Gpf 229 (314)
T PRK08269 224 AVLGLL 229 (314)
T ss_pred cCcCHH
Confidence 445654
No 99
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.59 E-value=1.9e-14 Score=129.73 Aligned_cols=199 Identities=17% Similarity=0.090 Sum_probs=140.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCC---------------CccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG---------------AKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g---------------~~~~~~~~~~~~~aDivv~~~ 135 (290)
.++|+|||+|.||.++|..|...| +|.+|.++++..+.+.+.+ +...+++++.++++|+|++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilav 85 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGV 85 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEe
Confidence 588999999999999999999998 6888989887766555421 224457778889999999999
Q ss_pred CChhHHHHHhcccccccccCCCCCEEEEecCCChhH-----HHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCC
Q 022909 136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT-----SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGD 210 (290)
Q Consensus 136 p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~-----~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 210 (290)
|. ..++.++ +++.+.++++..+|+++.|-... .+.+.+.+.......+..|.+..+.........++.+.+
T Consensus 86 ps-~~~~~vl---~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via~~~ 161 (341)
T PRK12439 86 PS-HGFRGVL---TELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMPD 161 (341)
T ss_pred CH-HHHHHHH---HHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEEeCC
Confidence 85 6678877 45566778888888887654432 233444443223345566766544333333334455567
Q ss_pred HHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHH-----------------HHHHHHH-HHHHHHHHHHHHCCCCHHHHH
Q 022909 211 KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVV-----------------NMIMGRS-CTFSYSFLTLEFVDFLINTVT 272 (290)
Q Consensus 211 ~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~-----------------n~~~~~~-~~~~ea~~l~~~~G~~~~~~~ 272 (290)
++..+.++++|+.-+.+++...|.....+.+.+- |...+++ .++.|+.++++..|.+++++.
T Consensus 162 ~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~~ 241 (341)
T PRK12439 162 QHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETFA 241 (341)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 7778899999999998888877755444444333 3333455 788999999999999999887
Q ss_pred HH
Q 022909 273 MF 274 (290)
Q Consensus 273 ~~ 274 (290)
.+
T Consensus 242 gl 243 (341)
T PRK12439 242 GL 243 (341)
T ss_pred cc
Confidence 64
No 100
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.57 E-value=3.6e-14 Score=127.18 Aligned_cols=196 Identities=12% Similarity=0.044 Sum_probs=140.0
Q ss_pred eEEEEcccHhHHHHHHHHHHCC--------CeEEEEeCCc-----cchhhHHhC--------------CCccCCCHHHHh
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAG--------CDVTVWNRTK-----SKCDPLISL--------------GAKYQPSPDEVA 125 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g--------~~V~~~d~~~-----~~~~~~~~~--------------g~~~~~~~~~~~ 125 (290)
||+|||.|++|.++|..|...| ++|.+|.|++ +-.+.+.+. ++...+++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999999988 9999999832 222222210 133457889999
Q ss_pred hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhH-------HHHHHHHHHHcCCcEEeCccCCCCccc
Q 022909 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT-------SKLINGHIKATGASFLEAPVSGSKKPA 198 (290)
Q Consensus 126 ~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~-------~~~l~~~l~~~~~~~~~~p~~~~~~~~ 198 (290)
+++|+|++++|. ...+.++ +++.+.++++.++|+++-|--.. .+.+.+.+ ...+.++..|.+..+...
T Consensus 81 ~~ADiIIlAVPs-~~i~~vl---~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l-~~~~~~lsGP~~A~Eva~ 155 (342)
T TIGR03376 81 KGADILVFVIPH-QFLEGIC---KQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL-GIPCGVLSGANLANEVAK 155 (342)
T ss_pred hcCCEEEEECCh-HHHHHHH---HHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh-CCCeEEeeCcchHHHHHc
Confidence 999999999986 6777777 45566788888999987543222 23333444 234566778988877766
Q ss_pred cCCceEEEecCC----HHHHHHHHHHHHHhCCcEEEeCCc-c--hHHH--------------HHHHHHHHHHHH-HHHHH
Q 022909 199 EDGQLIFLAAGD----KSLYNTVAPLLDIMGKSRFYLGDV-G--NGAA--------------MKLVVNMIMGRS-CTFSY 256 (290)
Q Consensus 199 ~~~~~~~~~~~~----~~~~~~v~~ll~~~G~~~~~~~~~-g--~a~~--------------~k~~~n~~~~~~-~~~~e 256 (290)
+....+.+.+.+ .+..+.++++|+.--++++...|. | .+-+ +.+..|...+++ .++.|
T Consensus 156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~E 235 (342)
T TIGR03376 156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLE 235 (342)
T ss_pred CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 666666677777 778888999998766667665542 1 1222 233447778888 99999
Q ss_pred HHHHHHHCCCCHH--HHHH
Q 022909 257 SFLTLEFVDFLIN--TVTM 273 (290)
Q Consensus 257 a~~l~~~~G~~~~--~~~~ 273 (290)
..++++..|-+++ ++..
T Consensus 236 m~~l~~~~g~~~~~~T~~g 254 (342)
T TIGR03376 236 MIKFARMFFPTGEVTFTFE 254 (342)
T ss_pred HHHHHHHhCCCCCCCcccc
Confidence 9999999998777 6643
No 101
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.56 E-value=7.3e-14 Score=118.37 Aligned_cols=167 Identities=17% Similarity=0.191 Sum_probs=113.3
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--------CCc---cCCCHHHHhhcCCeEEEEeCChh
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------GAK---YQPSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--------g~~---~~~~~~~~~~~aDivv~~~p~~~ 139 (290)
|||+||| +|+||+++++.|...|++|.+++|++++.+.+.+. +.. ...+..+.++++|+|++++|. .
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~-~ 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPW-D 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCH-H
Confidence 5799997 89999999999999999999999998776654431 211 223567788999999999986 5
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChhH---------------HHHHHHHHHHcCCcEEeC-cc-----CCCCccc
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDT---------------SKLINGHIKATGASFLEA-PV-----SGSKKPA 198 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~---------------~~~l~~~l~~~~~~~~~~-p~-----~~~~~~~ 198 (290)
....++ +++...++ ++++|+++.+-..+ .+.+.+.+.. +.+++.+ |. .... ..
T Consensus 80 ~~~~~l---~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~-~~ 153 (219)
T TIGR01915 80 HVLKTL---ESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDV-DD 153 (219)
T ss_pred HHHHHH---HHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCC-CC
Confidence 556665 22333344 48899997664431 1334444432 1334432 22 2221 12
Q ss_pred cCCceEEEecCCHHHHHHHHHHHHHh-CCcEEEeCCcchHHHHHHHHH
Q 022909 199 EDGQLIFLAAGDKSLYNTVAPLLDIM-GKSRFYLGDVGNGAAMKLVVN 245 (290)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~ll~~~-G~~~~~~~~~g~a~~~k~~~n 245 (290)
..+...+++|.++++.+.+.++.+.+ |+.++.+|+...+..+.-...
T Consensus 154 ~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e~~~~ 201 (219)
T TIGR01915 154 EVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIVESLTP 201 (219)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHHHhHHH
Confidence 22344667777788999999999999 999999998777766554433
No 102
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.56 E-value=1.7e-13 Score=123.09 Aligned_cols=197 Identities=15% Similarity=0.147 Sum_probs=130.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--C------------CccCCCHHHHh-hcCCeEEEEeC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--G------------AKYQPSPDEVA-ASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--g------------~~~~~~~~~~~-~~aDivv~~~p 136 (290)
|+|+|||+|.||..++..|...|++|.+|+|+++..+.+.+. + +....+.++.+ .++|+|++++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 479999999999999999999999999999988766555442 1 12335666666 58999999997
Q ss_pred ChhHHHHHhcccccccc-cCCCCCEEEEecCCChhH-----HHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCC
Q 022909 137 DPESAMDVACGKHGAAS-GMGPGKGYVDVSTVDGDT-----SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGD 210 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~-~~~~~~~lin~s~~~~~~-----~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 210 (290)
. ..+..++ +++.+ .++++..+|..+.|-... .+.+.+.+....+..+..|.+..+........+.+.+.+
T Consensus 81 s-~~~~~~l---~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~ 156 (326)
T PRK14620 81 T-QQLRTIC---QQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQN 156 (326)
T ss_pred H-HHHHHHH---HHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEecCC
Confidence 5 6677777 34555 667777677666554221 234444443333334444443222212222233445555
Q ss_pred HHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHH-----------------HHH-HHHHHHHHHHHHCCC--CHHH
Q 022909 211 KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM-----------------GRS-CTFSYSFLTLEFVDF--LINT 270 (290)
Q Consensus 211 ~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~-----------------~~~-~~~~ea~~l~~~~G~--~~~~ 270 (290)
.+..+.+.++|+.-+.+++...|.....|.|++-|.+. .++ .++.|+..+++..|. ++++
T Consensus 157 ~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~ 236 (326)
T PRK14620 157 ETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNT 236 (326)
T ss_pred HHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcch
Confidence 66667777888877887877777766667776655432 224 678899999999987 8888
Q ss_pred HH
Q 022909 271 VT 272 (290)
Q Consensus 271 ~~ 272 (290)
+.
T Consensus 237 ~~ 238 (326)
T PRK14620 237 LI 238 (326)
T ss_pred hh
Confidence 83
No 103
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.55 E-value=1.2e-13 Score=135.53 Aligned_cols=193 Identities=14% Similarity=0.078 Sum_probs=133.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHH-----------hC-------------CCccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~ 126 (290)
-++|+|||+|.||..||..++..|++|.++|++++..+... +. .+...++++ .++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 391 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFE 391 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence 37899999999999999999999999999999987644321 11 234456664 469
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEE
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 206 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~ 206 (290)
+||+||.++|.+.+++.-++ +++-+.++++++|...+++-++ .++.+.+... -+++....+.++... +++-+
T Consensus 392 ~aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i--~~la~~~~~p-~r~~g~Hff~P~~~~---~lVEv 463 (715)
T PRK11730 392 RVDVVVEAVVENPKVKAAVL--AEVEQKVREDTILASNTSTISI--SLLAKALKRP-ENFCGMHFFNPVHRM---PLVEV 463 (715)
T ss_pred CCCEEEecccCcHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCH--HHHHhhcCCC-ccEEEEecCCccccc---ceEEe
Confidence 99999999999999887774 4556678889888554444333 3555665432 345553333332221 23333
Q ss_pred ec---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCC
Q 022909 207 AA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSF 280 (290)
Q Consensus 207 ~~---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~ 280 (290)
+. .+++.++.+.+++..+|+.++.+.+.. + ++.|=+ ....+.|++.+.++ |.++++++.++...++
T Consensus 464 v~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~p-G----fv~nRi--~~~~~~ea~~lv~~-Ga~~e~ID~a~~~~~G 532 (715)
T PRK11730 464 IRGEKTSDETIATVVAYASKMGKTPIVVNDCP-G----FFVNRV--LFPYFAGFSQLLRD-GADFRQIDKVMEKQFG 532 (715)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCceEEecCcC-c----hhHHHH--HHHHHHHHHHHHHc-CCCHHHHHHHHHhhCC
Confidence 33 367999999999999999999996532 2 222321 11445788877765 5999999999887665
No 104
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.53 E-value=5.4e-13 Score=116.79 Aligned_cols=193 Identities=17% Similarity=0.112 Sum_probs=118.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+++|||||+|+||+++|++|+.+|++|+++++.....+...+.|.... ++++++++||+|++++|. +++++++ +++
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd-~~t~~V~--~~e 91 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPD-EQQAHVY--KAE 91 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCC-hHHHHHH--HHH
Confidence 899999999999999999999999999999876544444445577654 899999999999999998 5668998 667
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc-----ccCCceEEEe-c--CCHHHHHHHHHHH
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-----AEDGQLIFLA-A--GDKSLYNTVAPLL 221 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~-----~~~~~~~~~~-~--~~~~~~~~v~~ll 221 (290)
+++.|++|++++-. .+--+.... .....++.++- +|=-.+... .+.+.+.++. - .+..+.+.+....
T Consensus 92 il~~MK~GaiL~f~-hgfni~~~~---i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala~a 167 (335)
T PRK13403 92 VEENLREGQMLLFS-HGFNIHFGQ---INPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALAYA 167 (335)
T ss_pred HHhcCCCCCEEEEC-CCcceecCc---eeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHHHH
Confidence 89999999987644 333322211 11122333322 332222111 1233333222 1 2346777888888
Q ss_pred HHhCCc---EEEeCCcchHHHHHHH--HHHHHHHH-HHHHHHHHHHHHCCCCHHHHH
Q 022909 222 DIMGKS---RFYLGDVGNGAAMKLV--VNMIMGRS-CTFSYSFLTLEFVDFLINTVT 272 (290)
Q Consensus 222 ~~~G~~---~~~~~~~g~a~~~k~~--~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~ 272 (290)
..+|.. ++... .....-..+. +..+.... ..+...+....++|.+||.++
T Consensus 168 ~~iG~~ragv~~tt-f~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~Ay 223 (335)
T PRK13403 168 KGVGCTRAGVIETT-FQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAY 223 (335)
T ss_pred HHcCCCceeEEecc-hHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 888875 22221 0000001111 11122222 333444455688888888765
No 105
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.53 E-value=4.3e-14 Score=129.96 Aligned_cols=138 Identities=13% Similarity=0.062 Sum_probs=102.0
Q ss_pred eeeecccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHh
Q 022909 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (290)
Q Consensus 3 ~~~~~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~i 82 (290)
++..|++..+ ++++.++++++++. +...|.+. . .+. +++|+|+|+|.|
T Consensus 218 V~nv~d~~tk--~~aD~~~G~~~s~~------d~~~R~~~------~-----~La-------------GKtVgVIG~G~I 265 (476)
T PTZ00075 218 AINVNDSVTK--SKFDNIYGCRHSLI------DGIFRATD------V-----MIA-------------GKTVVVCGYGDV 265 (476)
T ss_pred EEEeCCcchH--HHHHHHHHHHHHHH------HHHHHhcC------C-----CcC-------------CCEEEEECCCHH
Confidence 5566777777 56666777766655 22223221 1 223 899999999999
Q ss_pred HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE
Q 022909 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 83 G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li 162 (290)
|+.+|++++.+|++|+++++++.+.......|... .+++++++.+|+|++|+. +++++ +++.++.||+++++|
T Consensus 266 Gr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atG----t~~iI--~~e~~~~MKpGAiLI 338 (476)
T PTZ00075 266 GKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATG----NKDII--TLEHMRRMKNNAIVG 338 (476)
T ss_pred HHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCC----ccccc--CHHHHhccCCCcEEE
Confidence 99999999999999999999877654444456654 379999999999999853 46677 567899999999999
Q ss_pred EecCCChhHHHHHHHHHHHc
Q 022909 163 DVSTVDGDTSKLINGHIKAT 182 (290)
Q Consensus 163 n~s~~~~~~~~~l~~~l~~~ 182 (290)
|++++. .+.+.++|+..
T Consensus 339 NvGr~d---~Ei~i~aL~~~ 355 (476)
T PTZ00075 339 NIGHFD---NEIQVAELEAY 355 (476)
T ss_pred EcCCCc---hHHhHHHHHhc
Confidence 999984 44444555553
No 106
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.52 E-value=5.5e-14 Score=115.31 Aligned_cols=152 Identities=14% Similarity=0.199 Sum_probs=99.1
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----------C-------------CCccCCCHHHHhhcC
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L-------------GAKYQPSPDEVAASC 128 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~a 128 (290)
+|+|||+|.||+.+|..++..|++|.+||++++..+...+ . .+.+.++++++. ++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6999999999999999999999999999999876543221 1 244567898887 99
Q ss_pred CeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEec
Q 022909 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA 208 (290)
Q Consensus 129 Divv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 208 (290)
|+|+.++|.+.+.+.-++ +++-+.++++++|...+++-+. .++...+... -+++....+.++. ..+++-++.
T Consensus 80 dlViEai~E~l~~K~~~~--~~l~~~~~~~~ilasnTSsl~i--~~la~~~~~p-~R~ig~Hf~~P~~---~~~lVEvv~ 151 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELF--AELDEICPPDTILASNTSSLSI--SELAAALSRP-ERFIGMHFFNPPH---LMPLVEVVP 151 (180)
T ss_dssp SEEEE-S-SSHHHHHHHH--HHHHCCS-TTSEEEE--SSS-H--HHHHTTSSTG-GGEEEEEE-SSTT---T--EEEEEE
T ss_pred heehhhccccHHHHHHHH--HHHHHHhCCCceEEecCCCCCH--HHHHhccCcC-ceEEEEecccccc---cCceEEEeC
Confidence 999999999988887663 4566678899988655444433 3455555432 2344432232221 122333332
Q ss_pred ---CCHHHHHHHHHHHHHhCCcEEEeCC
Q 022909 209 ---GDKSLYNTVAPLLDIMGKSRFYLGD 233 (290)
Q Consensus 209 ---~~~~~~~~v~~ll~~~G~~~~~~~~ 233 (290)
.+++.++.+.++++.+|+.++.+.|
T Consensus 152 ~~~T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 152 GPKTSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp -TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 4679999999999999999988754
No 107
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.52 E-value=2.3e-13 Score=133.31 Aligned_cols=193 Identities=14% Similarity=0.088 Sum_probs=133.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----------C-------------CCccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L-------------GAKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~ 126 (290)
-++|+|||+|.||..||..++..|++|.++|++++..+...+ . .+....+++ .++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 391 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFD 391 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence 478999999999999999999999999999999876543211 1 234455664 468
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEE
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 206 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~ 206 (290)
+||+||.++|.+.+++.-++ +++-+.++++++|...+++-+ ..++.+.++.. -+++....+.++.. -+++-+
T Consensus 392 ~aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasnTS~l~--i~~ia~~~~~p-~r~ig~Hff~P~~~---~~lvEv 463 (714)
T TIGR02437 392 NVDIVVEAVVENPKVKAAVL--AEVEQHVREDAILASNTSTIS--ISLLAKALKRP-ENFCGMHFFNPVHR---MPLVEV 463 (714)
T ss_pred CCCEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCC--HHHHHhhcCCc-ccEEEEecCCCccc---CceEee
Confidence 99999999999999887773 456677889998854444333 33555655432 33444333333221 123333
Q ss_pred ec---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCC
Q 022909 207 AA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSF 280 (290)
Q Consensus 207 ~~---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~ 280 (290)
+. .+++.++.+.+++..+|+.++.+.+. .+ ++.|-+ +...+.|++.+.+ .|.++++++.++...++
T Consensus 464 v~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~-pG----fi~NRl--~~~~~~ea~~l~~-eG~~~~~ID~a~~~~~G 532 (714)
T TIGR02437 464 IRGEKSSDETIATVVAYASKMGKTPIVVNDC-PG----FFVNRV--LFPYFGGFSKLLR-DGADFVRIDKVMEKQFG 532 (714)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEeCCc-cc----chHHHH--HHHHHHHHHHHHH-CCCCHHHHHHHHHhcCC
Confidence 33 36799999999999999999999753 22 233322 1145688887775 46999999999877665
No 108
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.49 E-value=6.8e-13 Score=115.15 Aligned_cols=166 Identities=20% Similarity=0.279 Sum_probs=118.4
Q ss_pred HHHHHHHCC--CeEEEEeCCccchhhHHhCCCccC-CCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE
Q 022909 86 MAQNLLKAG--CDVTVWNRTKSKCDPLISLGAKYQ-PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 162 (290)
Q Consensus 86 la~~l~~~g--~~V~~~d~~~~~~~~~~~~g~~~~-~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li 162 (290)
+|+.|++.| ++|.+||++++..+...+.|+... .+..+.++++|+||+|+|. ..+..++ +++.+.++++++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~-~~~~~~l---~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPV-SAIEDVL---EEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-H-HHHHHHH---HHHHCGS-TTSEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCH-HHHHHHH---HHhhhhcCCCcEEE
Confidence 578888888 699999999988777766666432 1225788999999999986 5677777 55677899999999
Q ss_pred EecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCc--------cccCCceEEEecC---CHHHHHHHHHHHHHhCCcEEE
Q 022909 163 DVSTVDGDTSKLINGHIKATGASFLE-APVSGSKK--------PAEDGQLIFLAAG---DKSLYNTVAPLLDIMGKSRFY 230 (290)
Q Consensus 163 n~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~--------~~~~~~~~~~~~~---~~~~~~~v~~ll~~~G~~~~~ 230 (290)
|+++......+.+.+.+. .+..|++ ||++|++. ....+...+++.. ++++++.++++++.+|.+++.
T Consensus 77 Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~ 155 (258)
T PF02153_consen 77 DVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVE 155 (258)
T ss_dssp E--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE
T ss_pred EeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence 999999888888777766 5678888 89999843 2345666777744 347889999999999999999
Q ss_pred eCCcchHHHHHHHHHHHHHHHHHHHH
Q 022909 231 LGDVGNGAAMKLVVNMIMGRSCTFSY 256 (290)
Q Consensus 231 ~~~~g~a~~~k~~~n~~~~~~~~~~e 256 (290)
+....+...+..++.+-+.+..++..
T Consensus 156 ~~~eeHD~~~A~vshlpH~~a~al~~ 181 (258)
T PF02153_consen 156 MDAEEHDRIMAYVSHLPHLLASALAN 181 (258)
T ss_dssp --HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888887766555433333
No 109
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.48 E-value=7e-13 Score=130.06 Aligned_cols=189 Identities=13% Similarity=0.060 Sum_probs=130.8
Q ss_pred CCeEEEEcccHhHHHHHHHHH-HCCCeEEEEeCCccchhhHHh-----------C-------------CCccCCCHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLL-KAGCDVTVWNRTKSKCDPLIS-----------L-------------GAKYQPSPDEVA 125 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~-~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~ 125 (290)
-++|+|||+|.||..||..++ ..|++|.++|++++..+...+ . .+..++++ +.+
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 387 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGF 387 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHh
Confidence 478999999999999999998 889999999998775433211 1 23445666 457
Q ss_pred hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEE
Q 022909 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF 205 (290)
Q Consensus 126 ~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~ 205 (290)
++||+|+.++|.+.+.+.-++ +++-+.++|+++|...+++-++ .++.+.+... -+++....+.++.. -+++-
T Consensus 388 ~~aDlViEav~E~~~~K~~v~--~~le~~~~~~~ilasnTS~l~i--~~la~~~~~p-~r~ig~Hff~P~~~---~~lVE 459 (708)
T PRK11154 388 KHADVVIEAVFEDLALKQQMV--AEVEQNCAPHTIFASNTSSLPI--GQIAAAAARP-EQVIGLHYFSPVEK---MPLVE 459 (708)
T ss_pred ccCCEEeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHHhcCcc-cceEEEecCCcccc---CceEE
Confidence 999999999999999887773 4556778999988655444333 3555655433 34555333333221 12333
Q ss_pred Eec---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHh
Q 022909 206 LAA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQ 276 (290)
Q Consensus 206 ~~~---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~ 276 (290)
++. .+++.++.+.+++..+|+.++.+.+. .+....-+ +. ..++|+..+.++ |+++++++.++.
T Consensus 460 vv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~-pGfi~nRl---~~---~~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 460 VIPHAKTSAETIATTVALAKKQGKTPIVVRDG-AGFYVNRI---LA---PYINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred EECCCCCCHHHHHHHHHHHHHcCCceEEEecc-CcHHHHHH---HH---HHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 333 46799999999999999999988652 22222111 11 556888877775 789999999986
No 110
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.47 E-value=1.5e-12 Score=127.55 Aligned_cols=189 Identities=12% Similarity=0.059 Sum_probs=129.0
Q ss_pred CCeEEEEcccHhHHHHHHHHH-HCCCeEEEEeCCccchhhHH-----------hC-------------CCccCCCHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLL-KAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVA 125 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~-~~g~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~ 125 (290)
-++|+|||+|.||..+|..++ ..|++|.++|++++..+... +. .+...++++ .+
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 382 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GF 382 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hh
Confidence 478999999999999999998 58999999999986543321 11 234556664 57
Q ss_pred hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEE
Q 022909 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF 205 (290)
Q Consensus 126 ~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~ 205 (290)
++||+|+.++|.+.+++.-++ +++-+..+++++|...+++-++ .++.+.+... -+++....+.++.. -+++-
T Consensus 383 ~~adlViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i--~~la~~~~~p-~r~~g~HffnP~~~---~~lVE 454 (699)
T TIGR02440 383 KDVDIVIEAVFEDLALKHQMV--KDIEQECAAHTIFASNTSSLPI--GQIAAAASRP-ENVIGLHYFSPVEK---MPLVE 454 (699)
T ss_pred ccCCEEEEeccccHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCH--HHHHHhcCCc-ccEEEEecCCcccc---CceEE
Confidence 899999999999999887773 4556678888887544443333 3555655433 24444333333221 12333
Q ss_pred Eec---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHh
Q 022909 206 LAA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQ 276 (290)
Q Consensus 206 ~~~---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~ 276 (290)
++. .+++.++.+.++++.+|+.++.+.+. .+....-+ +. ..+.|++.+.+ .|+++++++.++.
T Consensus 455 vv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~-pGfi~nRl---~~---~~~~Ea~~l~~-~G~~~~dID~a~~ 520 (699)
T TIGR02440 455 VIPHAGTSEQTIATTVALAKKQGKTPIVVADK-AGFYVNRI---LA---PYMNEAARLLL-EGEPVEHIDKALV 520 (699)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEEccc-cchHHHHH---HH---HHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 333 46799999999999999999999763 22222111 11 55688887766 5689999999985
No 111
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.47 E-value=8.2e-13 Score=129.72 Aligned_cols=189 Identities=12% Similarity=0.016 Sum_probs=129.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----------C-------------CCccCCCHHHHhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L-------------GAKYQPSPDEVAA 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~ 126 (290)
-++|+|||+|.||..||..++..|++|.++|++++..+...+ . .+...++++ .++
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 413 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFK 413 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhc
Confidence 478999999999999999999999999999999876543211 1 244456675 568
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEE
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 206 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~ 206 (290)
+||+||.++|.+.+++.-++ +++-+.++++++|...+++ ....++.+.+.+. -+++....+.++.. -+++-+
T Consensus 414 ~aDlViEAv~E~l~~K~~vf--~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p-~r~ig~Hff~P~~~---m~LvEv 485 (737)
T TIGR02441 414 NADMVIEAVFEDLSLKHKVI--KEVEAVVPPHCIIASNTSA--LPIKDIAAVSSRP-EKVIGMHYFSPVDK---MQLLEI 485 (737)
T ss_pred cCCeehhhccccHHHHHHHH--HHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCc-cceEEEeccCCccc---CceEEE
Confidence 99999999999999887773 4566778899888543333 2333555665443 23444333332221 123333
Q ss_pred ec---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHh
Q 022909 207 AA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQ 276 (290)
Q Consensus 207 ~~---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~ 276 (290)
+. .+++.++.+.+++..+|+.++.+.+.. +. +.|=+ +...+.|+..+.++ |+++++++.++.
T Consensus 486 v~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p-GF----i~NRi--~~~~~~ea~~lv~e-Gv~~~~ID~a~~ 550 (737)
T TIGR02441 486 ITHDGTSKDTLASAVAVGLKQGKVVIVVKDGP-GF----YTTRC--LGPMLAEVIRLLQE-GVDPKKLDKLTT 550 (737)
T ss_pred eCCCCCCHHHHHHHHHHHHHCCCeEEEECCcC-Cc----hHHHH--HHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 33 467899999999999999999997632 22 22211 11556888877644 789999999974
No 112
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.46 E-value=2.5e-12 Score=114.32 Aligned_cols=199 Identities=15% Similarity=0.136 Sum_probs=131.7
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-------------cCCCHHHHhhcCCeEEEEeCCh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------------YQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------------~~~~~~~~~~~aDivv~~~p~~ 138 (290)
|+|+|||+|.||..+|..|...|++|.+++| +++.+.+.+.|+. ..++.++..+.+|+|++++|.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~- 78 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA- 78 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-
Confidence 5799999999999999999999999999999 6666666554432 134556666889999999986
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcC----CcEEeCccCCCCccccCCceEEEec----CC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGSKKPAEDGQLIFLAA----GD 210 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~----~~ 210 (290)
.+++.++ +.+.+.+.++.++|.+..+- ...+.+.+.+.+.. +.++.++..++......+.-.+..+ ..
T Consensus 79 ~~~~~~~---~~l~~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 79 YQLDAAI---PDLKPLVGEDTVIIPLQNGI-GQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred cCHHHHH---HHHHhhcCCCCEEEEeeCCC-ChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 4566666 34555667788888776653 34456666654432 2233333322211111111112232 22
Q ss_pred HHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHH---------------------HHH-HHHHHHHHHHHHCCCC-
Q 022909 211 KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM---------------------GRS-CTFSYSFLTLEFVDFL- 267 (290)
Q Consensus 211 ~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~---------------------~~~-~~~~ea~~l~~~~G~~- 267 (290)
.+..+.+.++|...|..+....+.....|.|++.|... .++ ..+.|...++++.|++
T Consensus 155 ~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~ 234 (305)
T PRK12921 155 SERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPL 234 (305)
T ss_pred CHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 35566788888888887777788888899998877542 234 6788999999999976
Q ss_pred -HHHHHHHHh
Q 022909 268 -INTVTMFLQ 276 (290)
Q Consensus 268 -~~~~~~~i~ 276 (290)
.+...+.+.
T Consensus 235 ~~~~~~~~~~ 244 (305)
T PRK12921 235 RDDVVEEIVK 244 (305)
T ss_pred ChhHHHHHHH
Confidence 445555443
No 113
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.43 E-value=3.5e-13 Score=99.06 Aligned_cols=90 Identities=24% Similarity=0.407 Sum_probs=73.1
Q ss_pred eEEEEcccHhHHHHHHHHHHCC---CeEEE-EeCCccchhhHHh-CCCccCC-CHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAG---CDVTV-WNRTKSKCDPLIS-LGAKYQP-SPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g---~~V~~-~d~~~~~~~~~~~-~g~~~~~-~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
||||||+|+||.++++.|...| ++|.+ ++|++++..++++ .+..... +..++++++|+|++++|. +...+++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p-~~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKP-QQLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-G-GGHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECH-HHHHHHH-
Confidence 6999999999999999999999 89994 4999998888755 5555555 899999999999999965 7777877
Q ss_pred ccccccccCCCCCEEEEecCC
Q 022909 147 GKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~ 167 (290)
+++ ....+++++|+++.+
T Consensus 79 --~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 --SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp --HHH-HHHHTTSEEEEESTT
T ss_pred --HHH-hhccCCCEEEEeCCC
Confidence 334 667789999998643
No 114
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.43 E-value=6.4e-13 Score=116.73 Aligned_cols=110 Identities=21% Similarity=0.253 Sum_probs=86.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC--CCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--PSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
+++++|+|+|.||+.+++.|+.+|++|++++|++++...+.+.+.... ++++++++++|+|++++|.+ ++ +
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii--~ 223 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VL--T 223 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----Hh--C
Confidence 799999999999999999999999999999999876655555554332 35678889999999999874 33 3
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCc
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 190 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p 190 (290)
++.++.|++++++||+++.+.... + +..++.|++.+-+|
T Consensus 224 ~~~l~~~k~~aliIDlas~Pg~td--f-~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 224 ADVLSKLPKHAVIIDLASKPGGTD--F-EYAKKRGIKALLAP 262 (287)
T ss_pred HHHHhcCCCCeEEEEeCcCCCCCC--H-HHHHHCCCEEEEeC
Confidence 445778999999999988665542 2 45677788776555
No 115
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.42 E-value=3.6e-13 Score=108.14 Aligned_cols=136 Identities=17% Similarity=0.259 Sum_probs=96.0
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--------------CCccCCCHHHHhhcCCeEEEEeCCh
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------GAKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--------------g~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
||+|||.|++|.++|..|...|++|.+|+|+++..+.+.+. .+..+++++++++++|+|++++|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs- 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS- 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-
Confidence 69999999999999999999999999999998777766652 233567899999999999999987
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCCC-----hhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEEEecCCHH
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVD-----GDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKS 212 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~~-----~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 212 (290)
...+.++ +++.+.++++..+|+++.|- ....+.+.+.+....+.++..|.+..+........+.+.+.+.+
T Consensus 80 ~~~~~~~---~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~ 155 (157)
T PF01210_consen 80 QAHREVL---EQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVIASKNEE 155 (157)
T ss_dssp GGHHHHH---HHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred HHHHHHH---HHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence 5567777 56778889999999987554 11234444555544567777888877766655555556655554
No 116
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.42 E-value=1.1e-12 Score=108.05 Aligned_cols=148 Identities=20% Similarity=0.202 Sum_probs=90.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--------------------CCccCCCHHHHhhcCCeE
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------------GAKYQPSPDEVAASCDVT 131 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~aDiv 131 (290)
|||+|||+|.+|..+|..|+..|++|+++|.++++.+.+.+. .+...++.++.++++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 789999999999999999999999999999999887766541 234567888889999999
Q ss_pred EEEeCChhH------HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHH-HHHHcC-----CcEEeCccCCCCccc-
Q 022909 132 FAMLADPES------AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING-HIKATG-----ASFLEAPVSGSKKPA- 198 (290)
Q Consensus 132 v~~~p~~~~------~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~-~l~~~~-----~~~~~~p~~~~~~~~- 198 (290)
++|+|.+.. +..+...-+.+.+.++++.++|.-|+..+..++++.. .+++.+ +.+..+|.+-.+...
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence 999997632 2222222245677789999999999999999996554 444433 345567866544332
Q ss_pred --cCCceEEEecCCH-HHHHHHHH
Q 022909 199 --EDGQLIFLAAGDK-SLYNTVAP 219 (290)
Q Consensus 199 --~~~~~~~~~~~~~-~~~~~v~~ 219 (290)
...+..++.|.++ .+.+.+++
T Consensus 161 ~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 161 EDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp HHHHSSSEEEEEESSHHHHHHHHH
T ss_pred hhccCCCEEEEeCCcHHHHHHHhc
Confidence 1223344555444 44335554
No 117
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.41 E-value=2.5e-13 Score=104.26 Aligned_cols=111 Identities=26% Similarity=0.411 Sum_probs=70.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEE-EEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
.+||+|||+|++|..+++.|...|++|. +|+|+++..+++.+ .+.....+++|+++++|++++++|+ ..+..+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpD-daI~~va--- 85 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPD-DAIAEVA--- 85 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-C-CHHHHHH---
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEech-HHHHHHH---
Confidence 5899999999999999999999999987 55788766666554 2334455788899999999999988 4666665
Q ss_pred cccccc--CCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 149 HGAASG--MGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 149 ~~~~~~--~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+++... .+++++++.+|.....+ +.+-+++.|.....
T Consensus 86 ~~La~~~~~~~g~iVvHtSGa~~~~---vL~p~~~~Ga~~~s 124 (127)
T PF10727_consen 86 EQLAQYGAWRPGQIVVHTSGALGSD---VLAPARERGAIVAS 124 (127)
T ss_dssp HHHHCC--S-TT-EEEES-SS--GG---GGHHHHHTT-EEEE
T ss_pred HHHHHhccCCCCcEEEECCCCChHH---hhhhHHHCCCeEEE
Confidence 344444 78999999998765543 34445566655443
No 118
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.39 E-value=1.6e-11 Score=109.01 Aligned_cols=201 Identities=19% Similarity=0.210 Sum_probs=129.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-----------cCCCHHHHhhcCCeEEEEeCChhH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-----------YQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-----------~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
|+|+|||+|.||..+|..|...|++|++++|++++.+.+.+.|.. ..++.+++ +.+|+|++++|. .+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~-~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKA-YQ 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccc-cc
Confidence 579999999999999999999999999999987777766665542 23455555 889999999975 55
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCc----EEeCccCCCC--ccccCCceEEEec-CCHHH
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS----FLEAPVSGSK--KPAEDGQLIFLAA-GDKSL 213 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~----~~~~p~~~~~--~~~~~~~~~~~~~-~~~~~ 213 (290)
+..++ +.+.+.+.+++.+|....+- ...+.+.+.+....+. +...-..++- .....+...+-.. +..+.
T Consensus 79 ~~~~~---~~l~~~l~~~~~iv~~~nG~-~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 79 LPAAL---PSLAPLLGPDTPVLFLQNGV-GHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred HHHHH---HHHhhhcCCCCEEEEecCCC-CcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 67776 44566677788888776653 3344555555432221 1111011100 0112233222111 12234
Q ss_pred HHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHH---------------------HHH-HHHHHHHHHHHHCCCC--HH
Q 022909 214 YNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIM---------------------GRS-CTFSYSFLTLEFVDFL--IN 269 (290)
Q Consensus 214 ~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~---------------------~~~-~~~~ea~~l~~~~G~~--~~ 269 (290)
.+.+.++|+..|..+....+.....|.|++.|... ..+ ..+.|...++++.|++ .+
T Consensus 155 ~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~ 234 (304)
T PRK06522 155 AEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVE 234 (304)
T ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChH
Confidence 67788889888887766777888888887766421 123 5678999999998865 45
Q ss_pred HHHHHHhhc
Q 022909 270 TVTMFLQSF 278 (290)
Q Consensus 270 ~~~~~i~~~ 278 (290)
.+.+.+...
T Consensus 235 ~~~~~~~~~ 243 (304)
T PRK06522 235 EVREYVRQV 243 (304)
T ss_pred HHHHHHHHH
Confidence 555555443
No 119
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.35 E-value=3.2e-12 Score=104.90 Aligned_cols=190 Identities=13% Similarity=0.115 Sum_probs=132.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-----------------------------CCccCCCH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----------------------------GAKYQPSP 121 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-----------------------------g~~~~~~~ 121 (290)
.+.|+|||.|.||+.||+..+..|++|.++|++++...+..+. .+...++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv 90 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNV 90 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCH
Confidence 6889999999999999999999999999999998765543220 12345678
Q ss_pred HHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEE-EecCCChhHHHHHHHHHHHc----CCcEEe-CccCCCC
Q 022909 122 DEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKAT----GASFLE-APVSGSK 195 (290)
Q Consensus 122 ~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~li-n~s~~~~~~~~~l~~~l~~~----~~~~~~-~p~~~~~ 195 (290)
.+++.++|+||.++-.+.+++.-+++ ++-...++.+++. |+|+-. ..++..++++. |.||+. .|++...
T Consensus 91 ~~~v~dadliiEAivEn~diK~~lF~--~l~~~ak~~~il~tNTSSl~---lt~ia~~~~~~srf~GlHFfNPvPvMKLv 165 (298)
T KOG2304|consen 91 SDAVSDADLIIEAIVENLDIKRKLFK--DLDKIAKSSTILATNTSSLS---LTDIASATQRPSRFAGLHFFNPVPVMKLV 165 (298)
T ss_pred HHhhhhhHHHHHHHHHhHHHHHHHHH--HHHhhcccceEEeeccccee---HHHHHhhccChhhhceeeccCCchhHHHh
Confidence 88899999999999888887765532 3334456677664 333322 23455555443 667666 4555433
Q ss_pred ccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 022909 196 KPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFL 275 (290)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i 275 (290)
..... ...+++.+..+..+-+.+|+.++.|.+.. .++.|-+ ++-.+.|++++.++-..+.|+++.++
T Consensus 166 EVir~------~~TS~eTf~~l~~f~k~~gKttVackDtp-----GFIVNRl--LiPyl~ea~r~yerGdAskeDIDtaM 232 (298)
T KOG2304|consen 166 EVIRT------DDTSDETFNALVDFGKAVGKTTVACKDTP-----GFIVNRL--LIPYLMEAIRMYERGDASKEDIDTAM 232 (298)
T ss_pred hhhcC------CCCCHHHHHHHHHHHHHhCCCceeecCCC-----chhhhHH--HHHHHHHHHHHHHhcCCcHhhHHHHH
Confidence 22211 12367899999999999999999888732 1333311 22556899999999999999999887
Q ss_pred hhc
Q 022909 276 QSF 278 (290)
Q Consensus 276 ~~~ 278 (290)
.-.
T Consensus 233 klG 235 (298)
T KOG2304|consen 233 KLG 235 (298)
T ss_pred hcc
Confidence 643
No 120
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.34 E-value=1.2e-11 Score=106.65 Aligned_cols=181 Identities=16% Similarity=0.108 Sum_probs=121.3
Q ss_pred CeEEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHH
Q 022909 95 CDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSK 173 (290)
Q Consensus 95 ~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~ 173 (290)
++|.+++|++++.+.+.+ .|+....+..++++++|+|+++++ ++....++ +++...+.+++++|+++.+- ..+
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl---~~l~~~~~~~~~ivS~~agi--~~~ 83 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVL---SELKSEKGKDKLLISIAAGV--TLE 83 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHH---HHHhhhccCCCEEEEecCCC--CHH
Confidence 589999999988777655 577777888899999999999997 78888887 33444456778999885554 445
Q ss_pred HHHHHHHHcCCcEEe-CccCCCCccccCCceEEEecC--CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHH
Q 022909 174 LINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGR 250 (290)
Q Consensus 174 ~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~ 250 (290)
.|.+.+... ..++. +|... ...+.+...+..+. +++..+.++++|+.+|..+ .+.+.....+.. +...--++
T Consensus 84 ~l~~~~~~~-~~ivR~mPn~~--~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~-~v~E~~~~~~ta-lsgsgPA~ 158 (245)
T TIGR00112 84 KLSQLLGGT-RRVVRVMPNTP--AKVGAGVTAIAANANVSEEDRALVLALFKAVGEVV-ELPEALMDAVTA-LSGSGPAY 158 (245)
T ss_pred HHHHHcCCC-CeEEEECCChH--HHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEE-EECHHHcchHHh-hccCcHHH
Confidence 666666432 23443 56542 22334444444332 4567889999999999855 454322222221 11122233
Q ss_pred HHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCcccc
Q 022909 251 SCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQYD 286 (290)
Q Consensus 251 ~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~~~ 286 (290)
++.+.|++ ..+.+.|++++++.+++.+++.|+..+.
T Consensus 159 ~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G~a~l~ 195 (245)
T TIGR00112 159 VFLFIEALADAGVKQGLPRELALELAAQTVKGAAKLL 195 (245)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34555665 5789999999999999999999987653
No 121
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=99.33 E-value=1.4e-10 Score=100.60 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=121.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhh-cCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
..+|||||+|+||+-+|+.+...|+.|..+||+. .....+..|....+.+.++++ ++|+|++|+ .-..++.++. .
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlct-silsiekila--t 127 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCT-SILSIEKILA--T 127 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEe-hhhhHHHHHH--h
Confidence 5789999999999999999999999999999986 334444578888888888876 599999998 4477788872 1
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCc--eEEEe---cCC----HHHHHHHHH
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQ--LIFLA---AGD----KSLYNTVAP 219 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~--~~~~~---~~~----~~~~~~v~~ 219 (290)
--++.++.|+++++..+...-....+.+.|++. ..++. +|++|+........ ..++. .+. ++..+.+.+
T Consensus 128 ypfqrlrrgtlfvdvlSvKefek~lfekYLPkd-fDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fle 206 (480)
T KOG2380|consen 128 YPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD-FDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLE 206 (480)
T ss_pred cCchhhccceeEeeeeecchhHHHHHHHhCccc-cceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHH
Confidence 124558999999999998888888888888764 55555 89999874332221 22221 122 678899999
Q ss_pred HHHHhCCcEEEeCCcchH
Q 022909 220 LLDIMGKSRFYLGDVGNG 237 (290)
Q Consensus 220 ll~~~G~~~~~~~~~g~a 237 (290)
++...|+..+++.-..+.
T Consensus 207 If~cegckmVemS~eeHD 224 (480)
T KOG2380|consen 207 IFACEGCKMVEMSYEEHD 224 (480)
T ss_pred HHHhcCCeEEEEEeeccc
Confidence 999999998887644333
No 122
>PLN02494 adenosylhomocysteinase
Probab=99.28 E-value=1.1e-11 Score=113.94 Aligned_cols=105 Identities=13% Similarity=0.061 Sum_probs=85.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+++|+|+|+|.||+.+|++++.+|++|+++++++.+.......|.... +++++++.+|+|+.+.. +++++ +++
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTG----t~~vI--~~e 326 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTG----NKDII--MVD 326 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCC----Cccch--HHH
Confidence 799999999999999999999999999999999876555555666544 78899999999997543 34554 455
Q ss_pred ccccCCCCCEEEEecC-CChhHHHHHHHH--HHHc
Q 022909 151 AASGMGPGKGYVDVST-VDGDTSKLINGH--IKAT 182 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~-~~~~~~~~l~~~--l~~~ 182 (290)
.++.|+++++++|+++ ...++..+|.++ +++.
T Consensus 327 ~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~ 361 (477)
T PLN02494 327 HMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRI 361 (477)
T ss_pred HHhcCCCCCEEEEcCCCCCccCHHHHhhcccccee
Confidence 6889999999999999 568888888876 5444
No 123
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.27 E-value=3.4e-11 Score=109.80 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=86.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+++|+|+|+|.||+.+++.++.+|++|+++++++.+.......|.... +++++++++|+||.++.. .+++ +.+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~----~~vI--~~~ 267 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGN----KDVI--RGE 267 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCC----HHHH--HHH
Confidence 899999999999999999999999999999999877655555666544 678899999999887643 4555 445
Q ss_pred ccccCCCCCEEEEecCCCh-hHHHHHHHHHHH
Q 022909 151 AASGMGPGKGYVDVSTVDG-DTSKLINGHIKA 181 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~-~~~~~l~~~l~~ 181 (290)
.+..||+|++++|+++... ++.++|.+.+.+
T Consensus 268 ~~~~mK~GailiN~G~~~~eId~~aL~~~~~~ 299 (406)
T TIGR00936 268 HFENMKDGAIVANIGHFDVEIDVKALEELAVE 299 (406)
T ss_pred HHhcCCCCcEEEEECCCCceeCHHHHHHHHhh
Confidence 6889999999999999987 888999887654
No 124
>PRK06444 prephenate dehydrogenase; Provisional
Probab=99.27 E-value=1.8e-10 Score=95.36 Aligned_cols=166 Identities=11% Similarity=0.101 Sum_probs=110.3
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
|+|+|||. |.||+.+++.|...|+.|. ++++|+|++|+|. ..+..++ ++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv-~~~~~~i---~~ 50 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPI-DAALNYI---ES 50 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCH-HHHHHHH---HH
Confidence 58999997 9999999999999999985 3689999999987 5556666 11
Q ss_pred ccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccC-CceEEEec--CCHHHHHHHHHHHHHhCC
Q 022909 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAED-GQLIFLAA--GDKSLYNTVAPLLDIMGK 226 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~-~~~~~~~~--~~~~~~~~v~~ll~~~G~ 226 (290)
+. .+++|+++.+... .+. ...|++ ||++|+...... ....+++. .+++..+.++++++ |.
T Consensus 51 ~~------~~v~Dv~SvK~~i----~~~----~~~~vg~HPMfGp~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G~ 114 (197)
T PRK06444 51 YD------NNFVEISSVKWPF----KKY----SGKIVSIHPLFGPMSYNDGVHRTVIFINDISRDNYLNEINEMFR--GY 114 (197)
T ss_pred hC------CeEEeccccCHHH----HHh----cCCEEecCCCCCCCcCcccccceEEEECCCCCHHHHHHHHHHHc--CC
Confidence 11 3789998887732 221 346777 999985543211 12333332 34566788999988 88
Q ss_pred cEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccc
Q 022909 227 SRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQY 285 (290)
Q Consensus 227 ~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~ 285 (290)
+++.+.+..+...+..++.+-+.+-.++.+ .. ..-.+-..+++.++.....++++.+
T Consensus 115 ~~~~~t~eeHD~~~A~ishLpH~ia~al~~-~~-~~~~t~~fr~l~ria~~~~~~~p~l 171 (197)
T PRK06444 115 HFVEMTADEHDLLMSEIMVKPYIISMILKD-IK-SDIKTGSFDKLLEVSEIKEKENWEV 171 (197)
T ss_pred EEEEeCHHHHHHHHHHHHHHHHHHHHHHcc-CC-CCCCCccHHHHHHHHHHhccCCHHH
Confidence 898899888888888887765433222222 11 1223335666666665555555444
No 125
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.26 E-value=3.7e-10 Score=100.91 Aligned_cols=189 Identities=17% Similarity=0.154 Sum_probs=122.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc--------------cCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--------------YQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~--------------~~~~~~~~~~~aDivv~~~p 136 (290)
.|+|+|||+|.||..+|..|++.|++|+++.|++. +...+.|+. ..++. +....+|+|+++++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK 81 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLK 81 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEec
Confidence 58999999999999999999999999999999763 334443322 11122 34577999999998
Q ss_pred ChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcC----CcEEeCccCCCCc--cccCCceEEE-ecC
Q 022909 137 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGSKK--PAEDGQLIFL-AAG 209 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~----~~~~~~p~~~~~~--~~~~~~~~~~-~~~ 209 (290)
.. ++..++ +.+.+.+.++..++....| ....+.+.+.+.+.. +.++++...++-. ....+...+- ..+
T Consensus 82 ~~-~~~~~~---~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~ 156 (313)
T PRK06249 82 TT-ANALLA---PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSG 156 (313)
T ss_pred CC-ChHhHH---HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCC
Confidence 64 455554 3345567778888877554 344556666664432 1122221211110 0112232221 112
Q ss_pred -C-----HHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHH---------------------HH-HHHHHHHHHH
Q 022909 210 -D-----KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG---------------------RS-CTFSYSFLTL 261 (290)
Q Consensus 210 -~-----~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~---------------------~~-~~~~ea~~l~ 261 (290)
+ .+..+.+.++|+..|..+...++.....|.|++.|...+ ++ ..+.|...++
T Consensus 157 ~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~va 236 (313)
T PRK06249 157 PAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQGA 236 (313)
T ss_pred CcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHHHH
Confidence 2 356677888999999988888889999999988764321 13 4678889999
Q ss_pred HHCCCC
Q 022909 262 EFVDFL 267 (290)
Q Consensus 262 ~~~G~~ 267 (290)
++.|++
T Consensus 237 ~a~Gi~ 242 (313)
T PRK06249 237 AACGHT 242 (313)
T ss_pred HhcCCC
Confidence 999986
No 126
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.21 E-value=1.3e-10 Score=101.48 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=85.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHH--CCCeEE-EEeCCccchhhHHh-CCC-ccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK--AGCDVT-VWNRTKSKCDPLIS-LGA-KYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~--~g~~V~-~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
.+||||||+|+||+.+++.+.. .++++. ++||++++.+.+.+ .+. ..+++++++++++|+|++|+|.... ..+.
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e~~ 84 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RAIV 84 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HHHH
Confidence 5899999999999999999986 377775 88999887766554 343 4567899999999999999987544 3333
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcE
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~ 186 (290)
...++.|..++..+.+...+.+++.+..++++.++
T Consensus 85 ------~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l 119 (271)
T PRK13302 85 ------EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQI 119 (271)
T ss_pred ------HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEE
Confidence 34456777777777777777889999999888765
No 127
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.20 E-value=3.8e-11 Score=96.03 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=85.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHh-CCC----ccCCCHHHHhhcCCeEEEEeCChhH-HHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS-LGA----KYQPSPDEVAASCDVTFAMLADPES-AMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~-~g~----~~~~~~~~~~~~aDivv~~~p~~~~-~~~ 143 (290)
+++|+|+|+|.||..+++.+...| .+|.+++|++++.+.+.+ .+. ....+.+++++++|+|++++|.... ...
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~ 98 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDE 98 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCC
Confidence 689999999999999999999986 789999999887766544 232 2345677778999999999987654 222
Q ss_pred HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
... ....++++.+++|++..+... .+.+.+++.|+.+++
T Consensus 99 ~~~----~~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~~v~ 137 (155)
T cd01065 99 LPL----PPSLLKPGGVVYDVVYNPLET--PLLKEARALGAKTID 137 (155)
T ss_pred CCC----CHHHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCceeC
Confidence 221 113468999999998876544 888888888888876
No 128
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=99.14 E-value=1.8e-10 Score=90.87 Aligned_cols=89 Identities=28% Similarity=0.319 Sum_probs=66.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc-chhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|+|||+|..|.+.|..|+..|.+|++..|... ..+..++.|.+.. +..|+++++|+|++.+|+ +....++ .+
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD-~~q~~vy--~~ 79 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPD-EVQPEVY--EE 79 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-H-HHHHHHH--HH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCCh-HHHHHHH--HH
Confidence 79999999999999999999999999999988766 5566666788765 899999999999999986 4445665 46
Q ss_pred cccccCCCCCEEEE
Q 022909 150 GAASGMGPGKGYVD 163 (290)
Q Consensus 150 ~~~~~~~~~~~lin 163 (290)
++.+.|++|+.++-
T Consensus 80 ~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 80 EIAPNLKPGATLVF 93 (165)
T ss_dssp HHHHHS-TT-EEEE
T ss_pred HHHhhCCCCCEEEe
Confidence 77889999998763
No 129
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.12 E-value=2.2e-09 Score=95.53 Aligned_cols=192 Identities=14% Similarity=0.050 Sum_probs=122.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-CCccC-----------CCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQ-----------PSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~-----------~~~~~~~~~aDivv~~~p~~ 138 (290)
.|||+|+|+|.||..+|-.|.+.|++|++++|++++.+.+.+. |+... ....+.....|+|++++ +.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v-K~ 80 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC-KA 80 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEEC-CH
Confidence 4789999999999999999999999999999987666655542 33210 01112245789999998 55
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCc----EEeCccCCCCccccCCceEEEec-CCHHH
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS----FLEAPVSGSKKPAEDGQLIFLAA-GDKSL 213 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~----~~~~p~~~~~~~~~~~~~~~~~~-~~~~~ 213 (290)
.++...+ +.+.+.+.+++.+|-+-+|- ...+.+.+.+.+..+. ++++...++-.....+.-.+..| .+.+.
T Consensus 81 ~~~~~al---~~l~~~l~~~t~vv~lQNGv-~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~~ 156 (305)
T PRK05708 81 YDAEPAV---ASLAHRLAPGAELLLLQNGL-GSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNPT 156 (305)
T ss_pred HhHHHHH---HHHHhhCCCCCEEEEEeCCC-CCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCcc
Confidence 6677776 45667788888887775554 3444566665433211 11111111000011111112233 22344
Q ss_pred HHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHH------------------HH-HHHHHHHHHHHHCCCC
Q 022909 214 YNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG------------------RS-CTFSYSFLTLEFVDFL 267 (290)
Q Consensus 214 ~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~------------------~~-~~~~ea~~l~~~~G~~ 267 (290)
.+.+.++|+..|..+....+.....|.|++.|...+ .+ ..+.|...++++.|++
T Consensus 157 ~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~ 229 (305)
T PRK05708 157 APAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQP 229 (305)
T ss_pred hHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCC
Confidence 567888888888877777788999999988775321 23 5677888899999875
No 130
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.11 E-value=5.3e-09 Score=92.83 Aligned_cols=207 Identities=17% Similarity=0.167 Sum_probs=135.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC------------CCHHHHhhcCCeEEEEeCChh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ------------PSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~------------~~~~~~~~~aDivv~~~p~~~ 139 (290)
|||.|+|+|.||.-++..|...|.+|+++.|.+. .+.+++.|+... ....+.+..+|+|++++ ++.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v-Ka~ 78 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV-KAY 78 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEe-ccc
Confidence 6899999999999999999999988999888775 666766543221 12234556899999998 567
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCc--EEeCc-cCCCCcc---ccCCceEE--EecCCH
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS--FLEAP-VSGSKKP---AEDGQLIF--LAAGDK 211 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~--~~~~p-~~~~~~~---~~~~~~~~--~~~~~~ 211 (290)
++..++ +.+.+.+++.+.++-.-.|-...+ .+.+...+..+- +..+. ...++.. ...+...+ ..++.+
T Consensus 79 q~~~al---~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 79 QLEEAL---PSLAPLLGPNTVVLFLQNGLGHEE-ELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred cHHHHH---HHhhhcCCCCcEEEEEeCCCcHHH-HHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 888887 567788888887776655544433 666665544111 11111 1111110 11122221 222344
Q ss_pred HHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHH---------------------H-HHHHHHHHHHHHCC--CC
Q 022909 212 SLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGR---------------------S-CTFSYSFLTLEFVD--FL 267 (290)
Q Consensus 212 ~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~---------------------~-~~~~ea~~l~~~~G--~~ 267 (290)
+..+.+.++|+..|..+.+..+.-...|.|++.|...+. + ..+.|....+.+.| ++
T Consensus 155 ~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~ 234 (307)
T COG1893 155 ELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELP 234 (307)
T ss_pred HHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 678888999999999888888899999999888765431 2 46778888888888 55
Q ss_pred H---HHHHHHHhhc--CCCCcc
Q 022909 268 I---NTVTMFLQSF--SFGNLQ 284 (290)
Q Consensus 268 ~---~~~~~~i~~~--~~gs~~ 284 (290)
. +.+.....++ ...|.|
T Consensus 235 ~~~~~~v~~~~~~~~~~~~sSM 256 (307)
T COG1893 235 EEVVERVLAVIRATDAENYSSM 256 (307)
T ss_pred HHHHHHHHHHHHhcccccCchH
Confidence 5 3444444554 344444
No 131
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.11 E-value=1.2e-09 Score=91.68 Aligned_cols=202 Identities=15% Similarity=0.143 Sum_probs=132.1
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC----eEEEEeCCccchhh-HHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDP-LISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~----~V~~~d~~~~~~~~-~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
+++|+||.|+|..++++.+.+.|. ++..+.++...... ++..|+..+.+..+.++.+|++++++ .+.....++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~sv-Kp~~i~~vl- 78 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSV-KPQVIESVL- 78 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEee-cchhHHHHh-
Confidence 579999999999999999999885 67777664333333 56678877766788999999999998 667777777
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccccCCceEEEecC--CHHHHHHHHHHHHH
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDI 223 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~ll~~ 223 (290)
.+.......+.+++.+.-|... ..+...+. ...+++. +|... ...+.+..++..+. ..++.+.++++++.
T Consensus 79 --s~~~~~~~~~~iivS~aaG~tl--~~l~~~l~-~~~rviRvmpNtp--~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~ 151 (267)
T KOG3124|consen 79 --SEIKPKVSKGKIIVSVAAGKTL--SSLESKLS-PPTRVIRVMPNTP--SVVGEGASVYAIGCHATNEDLELVEELLSA 151 (267)
T ss_pred --hcCccccccceEEEEEeecccH--HHHHHhcC-CCCceEEecCCCh--hhhhcCcEEEeeCCCcchhhHHHHHHHHHh
Confidence 3344446778899887655443 34555554 2334444 44432 22334443333332 35677899999999
Q ss_pred hCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHhhcCCCCcc
Q 022909 224 MGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSF-LTLEFVDFLINTVTMFLQSFSFGNLQ 284 (290)
Q Consensus 224 ~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~-~l~~~~G~~~~~~~~~i~~~~~gs~~ 284 (290)
.|+.. .+.+.-...+..+.-.. -++.+.+.|++ +.+.+.|++++.++++..|+..|+.+
T Consensus 152 vG~~~-evpE~~iDavTgLsGSg-PAy~f~~ieaLadGgVkmGlPr~lA~~laaqtllGAak 211 (267)
T KOG3124|consen 152 VGLCE-EVPEKCIDAVTGLSGSG-PAYVFVAIEALADGGVKMGLPRQLAYRLAAQTLLGAAK 211 (267)
T ss_pred cCcce-eCcHHhhhHHhhccCCc-HHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHH
Confidence 99843 33321111111111110 11225567777 68899999999999999999988764
No 132
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.11 E-value=4.1e-11 Score=104.93 Aligned_cols=165 Identities=12% Similarity=0.015 Sum_probs=124.5
Q ss_pred cccccccccCCCCcchhhhccCCCCccccccccCCCCCCCCCcccccccccccccCCCccccCCCCeEEEEcccHhHHHH
Q 022909 7 SSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPM 86 (290)
Q Consensus 7 ~~y~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~IgiiG~G~iG~~l 86 (290)
|++.-.+++ .-++-+++.+.|+-...-...++|.|...... . +.... ......+.+.|++|+|+.|+++
T Consensus 125 p~~~Ve~~a--~stl~hIl~l~rrntw~cq~l~eg~~~q~~~q-~--~e~a~------g~~~~~G~~~g~~g~gr~g~av 193 (435)
T KOG0067|consen 125 PSDAVEETA--DSTLCHILNLYRRNTWLCQALREGTCTQGLEQ-V--REAAC------GLARIRGPTLGLIGFGRTGQAV 193 (435)
T ss_pred cchhHHHHH--HHHHHHHHhhhcccchhhhhhcccceeechhh-h--hhhhh------ccccccccceeeecccccccee
Confidence 444444333 33455666778888888888889988632110 0 00000 0001117899999999999999
Q ss_pred HHHHHHCCCeEEEEeCCccchhhHH-hCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEec
Q 022909 87 AQNLLKAGCDVTVWNRTKSKCDPLI-SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 87 a~~l~~~g~~V~~~d~~~~~~~~~~-~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
+.+...||..|+.||+.... -+. ..|...+.+++|++-++|-+.+++..+++..+++ +.-...+|+.|+.++|++
T Consensus 194 ~~~A~afg~~~ifydp~~~~--g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~li--n~~tikqm~qGaflvnta 269 (435)
T KOG0067|consen 194 ALRAKAFGFVVIFYDPYLID--GIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELI--NDFTIKQMRQGAFLVNTA 269 (435)
T ss_pred hhhhhcccceeeeecchhhh--hhhhhcccceecccchhhhhccceeeecccCccccccc--ccccceeecccceEeeec
Confidence 99999999999999986432 222 2567777789999999999999999999999999 666788999999999999
Q ss_pred CCChhHHHHHHHHHHHcCCcE
Q 022909 166 TVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 166 ~~~~~~~~~l~~~l~~~~~~~ 186 (290)
++..+++.+|.++|+++.++.
T Consensus 270 ~gglvdekaLaqaLk~G~i~~ 290 (435)
T KOG0067|consen 270 RGGLVDEKALAQALKSGRIRG 290 (435)
T ss_pred ccccCChHHHHhhhccCceec
Confidence 999999999999999887663
No 133
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.10 E-value=1.7e-10 Score=91.56 Aligned_cols=93 Identities=19% Similarity=0.198 Sum_probs=68.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
++++.|+|+|.+|+.+|+.|+..|.+|++++.+|-+.-++...|.... +++++++++|+++.++... .++ ..+
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~----~vi--~~e 95 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNK----DVI--TGE 95 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSS----SSB---HH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCc----ccc--CHH
Confidence 899999999999999999999999999999999977666555777765 7999999999999886542 233 234
Q ss_pred ccccCCCCCEEEEecCCChh
Q 022909 151 AASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~ 170 (290)
.++.||+++++.|++.....
T Consensus 96 ~~~~mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 96 HFRQMKDGAILANAGHFDVE 115 (162)
T ss_dssp HHHHS-TTEEEEESSSSTTS
T ss_pred HHHHhcCCeEEeccCcCcee
Confidence 47889999999999766544
No 134
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.10 E-value=3.4e-10 Score=100.06 Aligned_cols=110 Identities=24% Similarity=0.310 Sum_probs=84.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC--CCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--PSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
+++++|||+|.+|+.+++.|+.+|.+|++++|++++.+...+.|.... +++.+.++++|+||.++|.. ++ +
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~-----~i--~ 224 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPAL-----VL--T 224 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChh-----hh--h
Confidence 799999999999999999999999999999999877666666665533 35678889999999998753 23 3
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCc
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 190 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p 190 (290)
++.++.|+++.++||++....... + +..++.|+..+..+
T Consensus 225 ~~~l~~~~~g~vIIDla~~pggtd--~-~~a~~~Gv~~~~~~ 263 (296)
T PRK08306 225 KEVLSKMPPEALIIDLASKPGGTD--F-EYAEKRGIKALLAP 263 (296)
T ss_pred HHHHHcCCCCcEEEEEccCCCCcC--e-eehhhCCeEEEEEC
Confidence 455778999999999987654422 2 34566677766543
No 135
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.09 E-value=5.5e-10 Score=102.49 Aligned_cols=100 Identities=18% Similarity=0.120 Sum_probs=79.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+++|+|+|+|.||+.+++.++.+|++|+++|+++.+.......|... .+++++++.+|+||.++.. .+++ +.+
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~----~~vI--~~~ 284 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGN----KDVI--TAE 284 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCC----HHHH--HHH
Confidence 89999999999999999999999999999999987765555566654 4788999999999987643 3445 445
Q ss_pred ccccCCCCCEEEEecCCCh-hHHHHHHH
Q 022909 151 AASGMGPGKGYVDVSTVDG-DTSKLING 177 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~-~~~~~l~~ 177 (290)
.+..||+|++++|.++... .+...|.+
T Consensus 285 ~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 285 HMEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 6888999999999998765 34444433
No 136
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=99.08 E-value=1.9e-09 Score=98.24 Aligned_cols=195 Identities=13% Similarity=0.059 Sum_probs=116.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCC------ccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT------KSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~------~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
+++|+|||+|.+|++.|..++..|++|.+--|. .+..+.+.+.|... .+++|++++||+|++.+|.+ . .+.
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~-q~~ 112 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-Q-HSD 112 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-H-HHH
Confidence 899999999999999999999999998854443 33344444566655 68999999999999999997 3 555
Q ss_pred hcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc-----ccCCceEE-Eec----CCHHH
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-----AEDGQLIF-LAA----GDKSL 213 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~-----~~~~~~~~-~~~----~~~~~ 213 (290)
+ .+++++.||+|+.+. .|.|--+... ......++.++- +|=-.+... .+.|.+++ .+- .+..+
T Consensus 113 v--~~~i~p~LK~Ga~L~-fsHGFni~~~---~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~g~a 186 (487)
T PRK05225 113 V--VRAVQPLMKQGAALG-YSHGFNIVEV---GEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEG 186 (487)
T ss_pred H--HHHHHhhCCCCCEEE-ecCCceeeeC---ceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCCchH
Confidence 5 478899999999875 3344332221 111122344333 443222211 12333332 222 23367
Q ss_pred HHHHHHHHHHhCCc---EEEeCCcchHHHHHHH--HHHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHH
Q 022909 214 YNTVAPLLDIMGKS---RFYLGDVGNGAAMKLV--VNMIMGRSCTFSY-SFLTLEFVDFLINTVTMFL 275 (290)
Q Consensus 214 ~~~v~~ll~~~G~~---~~~~~~~g~a~~~k~~--~n~~~~~~~~~~e-a~~l~~~~G~~~~~~~~~i 275 (290)
.+.+......+|.. ++... ........+. +..+...+.+..+ .+.-..+.|.+++.+...+
T Consensus 187 ~~~ala~a~~iG~~ragv~~tt-f~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A~k~~ 253 (487)
T PRK05225 187 MAIAKAWAAATGGHRAGVLESS-FVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLI 253 (487)
T ss_pred HHHHHHHHHHhCCCccceeecc-hHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 78888888888875 32221 1111111111 1122333333333 3366688899999998644
No 137
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=99.06 E-value=3.1e-08 Score=83.10 Aligned_cols=156 Identities=15% Similarity=0.193 Sum_probs=112.6
Q ss_pred CeEEEEcccHh--------------------HHHHHHHHHHCCCeEEEEeCCccch-----hhHHhCCCccCCCHHHHhh
Q 022909 72 GRIGFLGMGIM--------------------GTPMAQNLLKAGCDVTVWNRTKSKC-----DPLISLGAKYQPSPDEVAA 126 (290)
Q Consensus 72 ~~IgiiG~G~i--------------------G~~la~~l~~~g~~V~~~d~~~~~~-----~~~~~~g~~~~~~~~~~~~ 126 (290)
|||.|+|+|+- |..+|-.++..||+|.+.+++.+-. +...+.|++.+++-.+..+
T Consensus 2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~ 81 (340)
T COG4007 2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAE 81 (340)
T ss_pred ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhh
Confidence 66777777763 6778999999999999999986532 3344578999988889999
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhH-HHHHHHHHHHc--CCcEEe-CccCCCCccccCCc
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT-SKLINGHIKAT--GASFLE-APVSGSKKPAEDGQ 202 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~-~~~l~~~l~~~--~~~~~~-~p~~~~~~~~~~~~ 202 (290)
++++.++-+|....|-.+. +++++.+++|+++.|+++.+++. ...|...|+.+ .+.+-+ +|- +.+....+.
T Consensus 82 ~~Ei~VLFTPFGk~T~~Ia---rei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPA--gvPGtp~h~ 156 (340)
T COG4007 82 HGEIHVLFTPFGKATFGIA---REILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPA--GVPGTPQHG 156 (340)
T ss_pred cceEEEEecccchhhHHHH---HHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCC--CCCCCCCCc
Confidence 9999999999988888887 77899999999999999888763 34454455433 222222 221 223333333
Q ss_pred eEEEecC--------CHHHHHHHHHHHHHhCCcEEEeC
Q 022909 203 LIFLAAG--------DKSLYNTVAPLLDIMGKSRFYLG 232 (290)
Q Consensus 203 ~~~~~~~--------~~~~~~~v~~ll~~~G~~~~~~~ 232 (290)
..++.+. +++.+++..++.++.|+.+|.+.
T Consensus 157 ~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 157 HYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred eEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecC
Confidence 3334321 35777889999999999988765
No 138
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.02 E-value=2.5e-09 Score=88.16 Aligned_cols=205 Identities=12% Similarity=0.108 Sum_probs=143.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhH-----------HhCC--------------CccCCCHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG--------------AKYQPSPDEVA 125 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g--------------~~~~~~~~~~~ 125 (290)
-.||+|+|.|-+|+..|..++..|++|..||..++....+ .+.| +..++++.|+.
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~v 82 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELV 82 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHH
Confidence 3689999999999999999999999999999987654321 1112 23567999999
Q ss_pred hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCCccccCCceEE
Q 022909 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF 205 (290)
Q Consensus 126 ~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~ 205 (290)
+.+=.|-.|+|..-+.+.-+++ .++.+-....|+..|+ +......+.+-|.++.-..+.||+-.+. . -+++-
T Consensus 83 k~Ai~iQEcvpE~L~lkk~ly~---qlD~i~d~~tIlaSST-St~mpS~~s~gL~~k~q~lvaHPvNPPy-f---iPLvE 154 (313)
T KOG2305|consen 83 KGAIHIQECVPEDLNLKKQLYK---QLDEIADPTTILASST-STFMPSKFSAGLINKEQCLVAHPVNPPY-F---IPLVE 154 (313)
T ss_pred hhhhhHHhhchHhhHHHHHHHH---HHHHhcCCceEEeccc-cccChHHHhhhhhhhhheeEecCCCCCc-c---cchhe
Confidence 9999999999988887776632 2444444444444433 3333444555555554456666653221 0 11222
Q ss_pred Eec---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCCCC
Q 022909 206 LAA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSFGN 282 (290)
Q Consensus 206 ~~~---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs 282 (290)
++. .+++++++.+++.+.+|..++.....-.+.++..++. +.++|.-.+....+++..+++.+++...+-.
T Consensus 155 lVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~------Ailne~wrLvasGil~v~dvD~VmS~GLG~R 228 (313)
T KOG2305|consen 155 LVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQY------AILNETWRLVASGILNVNDVDAVMSAGLGPR 228 (313)
T ss_pred eccCCCCChhHHHHHHHHHHHhCCCCcccccccccceeccccH------HHHHHHHHHHHccCcchhhHHHHHhcCCCcc
Confidence 222 4678999999999999998887765544554443333 4567888899999999999999999999999
Q ss_pred ccccCCC
Q 022909 283 LQYDGNF 289 (290)
Q Consensus 283 ~~~~~~~ 289 (290)
..|.|++
T Consensus 229 YAflG~l 235 (313)
T KOG2305|consen 229 YAFLGPL 235 (313)
T ss_pred hhcccch
Confidence 8888864
No 139
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.98 E-value=3.1e-09 Score=97.33 Aligned_cols=91 Identities=18% Similarity=0.122 Sum_probs=76.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+++|+|+|+|.||..+++.++.+|.+|+++|+++.+.+.....|.... +.+++++.+|+|+.++... +++ +.+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~----~~i--~~~ 274 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNK----DII--TGE 274 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCH----HHH--HHH
Confidence 899999999999999999999999999999999988877777777544 5678889999999886442 344 344
Q ss_pred ccccCCCCCEEEEecCCC
Q 022909 151 AASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~ 168 (290)
.++.|++|.+++|+++..
T Consensus 275 ~l~~mk~GgilvnvG~~~ 292 (413)
T cd00401 275 HFEQMKDGAIVCNIGHFD 292 (413)
T ss_pred HHhcCCCCcEEEEeCCCC
Confidence 578899999999999764
No 140
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.96 E-value=1e-08 Score=85.51 Aligned_cols=108 Identities=17% Similarity=0.241 Sum_probs=80.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-CCccCCCHHHHhh-cCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~-~aDivv~~~p~~~~~~~~~~~~ 148 (290)
+++|+|+|+|+||+.+++.|..+|++|+++|+++++.+.+.+. +....+ .++++. ++|+++.+.... ++ +
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~-~~~l~~~~~Dv~vp~A~~~-----~I--~ 99 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVA-PEEIYSVDADVFAPCALGG-----VI--N 99 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEc-chhhccccCCEEEeccccc-----cc--C
Confidence 7999999999999999999999999999999998877766553 655553 355654 799998665433 33 3
Q ss_pred ccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++.++.++ ..+++.-+.+...+ .+-.+.|+++|+.|++
T Consensus 100 ~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~P 137 (200)
T cd01075 100 DDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGILYAP 137 (200)
T ss_pred HHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCEEeC
Confidence 33445565 45677766665543 5667888999999875
No 141
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.93 E-value=4.4e-08 Score=84.57 Aligned_cols=205 Identities=15% Similarity=0.139 Sum_probs=145.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHC--CCeEEEEeCCccchhhHHh-------------------CCCccCCCHHHHhhcCCe
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCDV 130 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~--g~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aDi 130 (290)
++|+.||+|.+|......++-. ..+|+++|.+..+...+.. .++.+.++.+..++++|+
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadl 81 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADL 81 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcce
Confidence 6899999999999887776543 3578899988766543321 134456789999999999
Q ss_pred EEEEeCChhHHHHHhcc-----------cccccccCCCCCEEEEecCCChhHHHHHHHHHHHc--CCc--EEeCccCCCC
Q 022909 131 TFAMLADPESAMDVACG-----------KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GAS--FLEAPVSGSK 195 (290)
Q Consensus 131 vv~~~p~~~~~~~~~~~-----------~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~--~~~--~~~~p~~~~~ 195 (290)
|++.+..+..+.++=.+ .+.+.+.-...++++.-|+.++...+.+...|... |+. +++.|.|-.+
T Consensus 82 vfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpeflae 161 (481)
T KOG2666|consen 82 VFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLAE 161 (481)
T ss_pred EEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhcc
Confidence 99999776555443211 11122334567899999999999998988888633 554 5667766544
Q ss_pred cccc---CCceEEEecCCH-----HHHHHHHHHHHHhCC-cEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC
Q 022909 196 KPAE---DGQLIFLAAGDK-----SLYNTVAPLLDIMGK-SRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVD 265 (290)
Q Consensus 196 ~~~~---~~~~~~~~~~~~-----~~~~~v~~ll~~~G~-~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G 265 (290)
..+. ..+--++.||.+ .+++.+..+++.+-. .-+.+....+++..|++.|.+.+.. .+++....+|+..|
T Consensus 162 gtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceatg 241 (481)
T KOG2666|consen 162 GTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEATG 241 (481)
T ss_pred cchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence 3332 122245666642 566777777887743 3345677899999999999988887 88888889999999
Q ss_pred CCHHHHHHHHh
Q 022909 266 FLINTVTMFLQ 276 (290)
Q Consensus 266 ~~~~~~~~~i~ 276 (290)
.|..++..++.
T Consensus 242 adv~eva~avg 252 (481)
T KOG2666|consen 242 ADVSEVAYAVG 252 (481)
T ss_pred CCHHHHHHHhc
Confidence 99999988874
No 142
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.92 E-value=9.4e-09 Score=89.58 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=78.3
Q ss_pred CeEEEEcccHhHHHHHHHHHHC--CCe-EEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA--GCD-VTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~--g~~-V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
+||||||+|.||+.+++.+... +++ +.++|+++++.+.+.+ .+...++++++++.++|+|++|+|. .......
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~-~~~~~~~-- 78 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASV-NAVEEVV-- 78 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCCh-HHHHHHH--
Confidence 6899999999999999999875 455 5588999887776654 4566678899999999999999875 3334443
Q ss_pred cccccccCCCCCEEEEecCCC---hhHHHHHHHHHHHcCCcE
Q 022909 148 KHGAASGMGPGKGYVDVSTVD---GDTSKLINGHIKATGASF 186 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~~---~~~~~~l~~~l~~~~~~~ 186 (290)
...++.|..++..|.+. ....+++.+..++.+..+
T Consensus 79 ----~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l 116 (265)
T PRK13304 79 ----PKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKI 116 (265)
T ss_pred ----HHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEE
Confidence 23345566666666543 334567777787777553
No 143
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.80 E-value=1.1e-08 Score=91.43 Aligned_cols=109 Identities=15% Similarity=0.238 Sum_probs=82.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CC-CeEEEEeCCccchhhHHhC----C--CccCCCHHHHhhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL----G--AKYQPSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g-~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
.++|+|||+|.+|+.+++.+.. ++ .+|.+|+|++++.+.+.+. + +..+.+.+++++++|+|+.++|.+ .
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---~ 201 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---E 201 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---C
Confidence 5899999999999999986654 44 6899999999888776653 3 455678899999999998888754 3
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.++ . .+++++|+ +||.........+++...+.++...|++
T Consensus 202 pvl--~---~~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD 241 (314)
T PRK06141 202 PLV--R---GEWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVD 241 (314)
T ss_pred CEe--c---HHHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEc
Confidence 444 1 25678998 5666666666667777766666666777
No 144
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.75 E-value=1.5e-07 Score=82.16 Aligned_cols=158 Identities=15% Similarity=0.102 Sum_probs=102.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-------CCeEEEEeCCccchh---hHHh------C------------CCccCCCHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-------GCDVTVWNRTKSKCD---PLIS------L------------GAKYQPSPD 122 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-------g~~V~~~d~~~~~~~---~~~~------~------------g~~~~~~~~ 122 (290)
..+|+|||.|++|+++|+.+... ..+|..|-+..+... .+.+ . ++..++|+.
T Consensus 21 ~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ 100 (372)
T KOG2711|consen 21 PLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLV 100 (372)
T ss_pred ceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHH
Confidence 58999999999999999998652 236777755432211 2211 0 344568999
Q ss_pred HHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCCh--------hHH-HHHHHHHHHcCCcEEeCccCC
Q 022909 123 EVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG--------DTS-KLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 123 ~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~--------~~~-~~l~~~l~~~~~~~~~~p~~~ 193 (290)
++++++||++..+|. +.+..++ +++....+++...|+++-|-- ... +.+.++|. -.+.++..|.+.
T Consensus 101 ea~~dADilvf~vPh-Qf~~~ic---~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lg-I~~~vL~GaNiA 175 (372)
T KOG2711|consen 101 EAAKDADILVFVVPH-QFIPRIC---EQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALG-IPCSVLMGANIA 175 (372)
T ss_pred HHhccCCEEEEeCCh-hhHHHHH---HHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhC-CCceeecCCchH
Confidence 999999999999987 6677777 567888999999998864322 112 22333332 234577777777
Q ss_pred CCccccCCceEEEecCCH-HHHHHHHHHHHHhCCcEEEeCC
Q 022909 194 SKKPAEDGQLIFLAAGDK-SLYNTVAPLLDIMGKSRFYLGD 233 (290)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~-~~~~~v~~ll~~~G~~~~~~~~ 233 (290)
.+.....-.-..+.+.++ +.-..+.++|+.--++++.+.|
T Consensus 176 ~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D 216 (372)
T KOG2711|consen 176 SEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVED 216 (372)
T ss_pred HHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEecc
Confidence 665543333333333333 3333588888877777776655
No 145
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.74 E-value=4.3e-08 Score=85.80 Aligned_cols=73 Identities=27% Similarity=0.424 Sum_probs=62.5
Q ss_pred CCeEEEEccc-HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G-~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|+|||.| .||+.+|.+|.+.|+.|++|+++.. ++.++.++||+|+++++.+..+..
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~------ 218 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDA------ 218 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccH------
Confidence 8999999996 9999999999999999999987542 678889999999999988654433
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
..+++|+++||+|.
T Consensus 219 ---~~ik~GaiVIDvgi 232 (301)
T PRK14194 219 ---DWLKPGAVVIDVGI 232 (301)
T ss_pred ---hhccCCcEEEEecc
Confidence 23789999999974
No 146
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.67 E-value=2.5e-07 Score=70.46 Aligned_cols=108 Identities=17% Similarity=0.265 Sum_probs=79.1
Q ss_pred CeEEEEcccHhHHHHHHHHHHC--CCeE-EEEeCCccchhhHHh-CCCccCCCHHHHhh--cCCeEEEEeCChhHHHHHh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA--GCDV-TVWNRTKSKCDPLIS-LGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~--g~~V-~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~~ 145 (290)
++|||||+|.+|+.....+... +.++ .++|+++++.+.+.+ .++..+++++++++ +.|+|++++|.......+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~ 80 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK 80 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence 3799999999999999998876 4465 488999888777654 78888899999998 6899999998866554433
Q ss_pred cccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcE
Q 022909 146 CGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~ 186 (290)
..++.|..++--= .....+.+++.+..++.+..+
T Consensus 81 -------~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 81 -------KALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp -------HHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred -------HHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 3344444433221 345667778888888777553
No 147
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.66 E-value=2.3e-08 Score=78.10 Aligned_cols=91 Identities=18% Similarity=0.229 Sum_probs=66.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCccchhhHHhC--C----CccCCCHHHHhhcCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISL--G----AKYQPSPDEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~~~~~~~~~~--g----~~~~~~~~~~~~~aDivv~~~p~~~~~~~ 143 (290)
++++.|||+|.+|++++..|...|.+ |++++|+.++.+.+.+. + ....+++.+.+.++|+||.++|.+..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~--- 88 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP--- 88 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST---
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc---
Confidence 79999999999999999999999986 99999999888877652 1 22345677778999999999987643
Q ss_pred HhcccccccccCCCC-CEEEEecC
Q 022909 144 VACGKHGAASGMGPG-KGYVDVST 166 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~-~~lin~s~ 166 (290)
.+ .++.++...+. .+++|.+.
T Consensus 89 ~i--~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 89 II--TEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp SS--THHHHTTTCHHCSEEEES-S
T ss_pred cc--CHHHHHHHHhhhhceecccc
Confidence 22 22223333222 48899863
No 148
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.64 E-value=2.3e-07 Score=76.69 Aligned_cols=94 Identities=19% Similarity=0.297 Sum_probs=71.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHC--CC-eEEEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA--GC-DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~--g~-~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
++|||||||.||..+.+.+..- +. .+.+||++.++...+.+ .+...+++++|++++.|+++.|. ..+.++...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaA-S~~Av~e~~-- 77 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAA-SPEAVREYV-- 77 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeC-CHHHHHHHh--
Confidence 4799999999999999998753 34 47799999998877665 44555689999999999999997 556666665
Q ss_pred cccccccCCCCCEEEEecCCChhHH
Q 022909 148 KHGAASGMGPGKGYVDVSTVDGDTS 172 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~~~~~~ 172 (290)
.+.++.|.-+|-+|.|...++
T Consensus 78 ----~~~L~~g~d~iV~SVGALad~ 98 (255)
T COG1712 78 ----PKILKAGIDVIVMSVGALADE 98 (255)
T ss_pred ----HHHHhcCCCEEEEechhccCh
Confidence 455677666666666666644
No 149
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.64 E-value=4.9e-08 Score=89.03 Aligned_cols=94 Identities=22% Similarity=0.352 Sum_probs=71.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCc---cC---CCHHHHhhcCCeEEEEeCChh-HHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAK---YQ---PSPDEVAASCDVTFAMLADPE-SAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~---~~---~~~~~~~~~aDivv~~~p~~~-~~~ 142 (290)
+.+|.|||+|.+|+..++.+..+|.+|.++|+++++.+.+.. .+.. .. .++.+.++++|+||.+++.+. ...
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p 246 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAP 246 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCC
Confidence 578999999999999999999999999999999877666544 2221 11 245677889999999975422 223
Q ss_pred HHhcccccccccCCCCCEEEEecC
Q 022909 143 DVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.++ .++.++.|+++.++||++-
T Consensus 247 ~li--t~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 247 KLV--SNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred cCc--CHHHHhcCCCCCEEEEEec
Confidence 344 4566788999999999973
No 150
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.61 E-value=1.8e-07 Score=80.55 Aligned_cols=148 Identities=19% Similarity=0.192 Sum_probs=95.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc-hhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|+|||+|.-|.+-|..|+..|.+|++--|.... .+.+.+.|..+. +.+|+++++|+|.+.+|+ .....++ .+
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PD-e~q~~vy--~~ 93 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPD-EQQKEVY--EK 93 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCch-hhHHHHH--HH
Confidence 899999999999999999999999999877776554 455556777755 899999999999999987 4445666 45
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCcc-----ccCCceEEEe-c--CCHHHHHHHHHH
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-----AEDGQLIFLA-A--GDKSLYNTVAPL 220 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~-----~~~~~~~~~~-~--~~~~~~~~v~~l 220 (290)
++.+.|++|+.+. .+.|--+.... .-..+++.++- +|=-.+... .+.+.++++. - .+..+.+.+...
T Consensus 94 ~I~p~Lk~G~aL~-FaHGfNihf~~---i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~Ala~ 169 (338)
T COG0059 94 EIAPNLKEGAALG-FAHGFNIHFGL---IVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIALAY 169 (338)
T ss_pred HhhhhhcCCceEE-eccccceecce---ecCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHHHHH
Confidence 7788999998653 33433222211 11122333222 332221111 1233333222 1 234677788888
Q ss_pred HHHhCC
Q 022909 221 LDIMGK 226 (290)
Q Consensus 221 l~~~G~ 226 (290)
...+|.
T Consensus 170 AkgiGg 175 (338)
T COG0059 170 AKGIGG 175 (338)
T ss_pred HHhcCC
Confidence 888874
No 151
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.58 E-value=2.4e-07 Score=81.26 Aligned_cols=72 Identities=31% Similarity=0.426 Sum_probs=61.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEe-CCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWN-RTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d-~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
+++|+||| .|.||+.+|.+|...|+.|++|+ |++ ++++++++||+|+++++.+.....
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~----- 217 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKG----- 217 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcch-----
Confidence 89999999 99999999999999999999995 543 467889999999999988654332
Q ss_pred ccccccCCCCCEEEEecC
Q 022909 149 HGAASGMGPGKGYVDVST 166 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~ 166 (290)
.++++|+++||++.
T Consensus 218 ----~~lk~GavVIDvGi 231 (296)
T PRK14188 218 ----DWIKPGATVIDVGI 231 (296)
T ss_pred ----heecCCCEEEEcCC
Confidence 23889999999964
No 152
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.58 E-value=2e-07 Score=81.55 Aligned_cols=112 Identities=25% Similarity=0.281 Sum_probs=80.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC----CCccCCCHHHH-hhcCCeEEEEeCChh--HHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAKYQPSPDEV-AASCDVTFAMLADPE--SAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~~~~~~~~~-~~~aDivv~~~p~~~--~~~~ 143 (290)
++++.|+|+|.+|++++..|...|++|.+++|++++.+.+.+. +.....+.++. ..++|+||.++|... ....
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~ 196 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDE 196 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCC
Confidence 6889999999999999999999999999999998776665442 21112233332 357999999998642 1111
Q ss_pred HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
... ..+.++++.+++|++..+..+ .+.+..++.|+.+++
T Consensus 197 ~~~----~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vd 235 (270)
T TIGR00507 197 PPV----PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTID 235 (270)
T ss_pred CCC----CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeC
Confidence 110 134578899999998877655 578888888887766
No 153
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.57 E-value=1.5e-07 Score=84.38 Aligned_cols=91 Identities=19% Similarity=0.270 Sum_probs=70.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC--CCeEEEEeCCccchhhHHh----CC--CccCCCHHHHhhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLIS----LG--AKYQPSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~--g~~V~~~d~~~~~~~~~~~----~g--~~~~~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
.+++||||+|.+|+..++.+... ..+|.+|||++++.+.+.+ .+ +..+++.+++++++|+|+.|+|...
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~--- 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK--- 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC---
Confidence 48899999999999988887653 3589999999988776644 34 3457899999999999999997643
Q ss_pred HHhcccccccccCCCCCEEEEecCCCh
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDG 169 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~ 169 (290)
.++ . .++++||+++..+++-.+
T Consensus 205 P~~--~---~~~l~~g~~v~~vGs~~p 226 (325)
T TIGR02371 205 PVV--K---ADWVSEGTHINAIGADAP 226 (325)
T ss_pred cEe--c---HHHcCCCCEEEecCCCCc
Confidence 444 1 356799999888876554
No 154
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.56 E-value=5.1e-07 Score=77.41 Aligned_cols=107 Identities=17% Similarity=0.206 Sum_probs=74.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC---CeE-EEEeCCccchhhHHhCCCccCCCHHHH-hhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG---CDV-TVWNRTKSKCDPLISLGAKYQPSPDEV-AASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g---~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~-~~~aDivv~~~p~~~~~~~~~ 145 (290)
.+||||||+|.||+.+++.+..-+ +++ .+++|++++.+.+.+. ...+.+++++ ....|+|+.|.+ .+.+++.-
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~-~~av~e~~ 79 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAG-QQAIAEHA 79 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCC-HHHHHHHH
Confidence 589999999999999999987532 444 4677777666666554 6778899997 578999999974 45555543
Q ss_pred cccccccccCCCCCEEEEecCCChhH---HHHHHHHHHHcCCc
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDT---SKLINGHIKATGAS 185 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~---~~~l~~~l~~~~~~ 185 (290)
.+.++.|.-++-.|-+...| .+.+.+..++.+.+
T Consensus 80 ------~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~ 116 (267)
T PRK13301 80 ------EGCLTAGLDMIICSAGALADDALRARLIAAAEAGGAR 116 (267)
T ss_pred ------HHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCE
Confidence 34456676666666666654 45566666665433
No 155
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=4e-06 Score=69.53 Aligned_cols=188 Identities=14% Similarity=0.078 Sum_probs=120.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEE-EEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
.+.+++||.|+.|++...+...-++.+. +..|++++...+.+.-.-...+.+.-.+-.+++++.+|.. ...++.
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~-~~s~va---- 84 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA-LYSGVA---- 84 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH-HHHHHH----
Confidence 4789999999999997777766677665 4467777666666522222224444444568888888764 344443
Q ss_pred cccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCC--CCccc---cCCceEEEecCCHHHHHHHHHHHHH
Q 022909 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSG--SKKPA---EDGQLIFLAAGDKSLYNTVAPLLDI 223 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~--~~~~~---~~~~~~~~~~~~~~~~~~v~~ll~~ 223 (290)
.-..-+||++++.||..... .+.+.+.+.|..-.. +|.|. +.+.. ..+....+..+|+.-...++++...
T Consensus 85 -a~~~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~e 160 (289)
T COG5495 85 -ATSLNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLALE 160 (289)
T ss_pred -HhcccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHHH
Confidence 13446799999999765443 445555555544333 67543 22221 3456565656776666788999999
Q ss_pred hCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCH
Q 022909 224 MGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLI 268 (290)
Q Consensus 224 ~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~ 268 (290)
+|..++.+.+. .-.......+...+.. ..+.++..+-+..|.|.
T Consensus 161 mgg~~f~V~~~-~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq 205 (289)
T COG5495 161 MGGEPFCVREE-ARILYHAAAVHASNFIVTVLADALEIYRAAGDDQ 205 (289)
T ss_pred hCCCceeechh-HHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCC
Confidence 99988766553 3334444444444444 66788888889999874
No 156
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.54 E-value=4.7e-07 Score=82.01 Aligned_cols=107 Identities=21% Similarity=0.272 Sum_probs=79.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHhCC---C-------ccCCCHHHHhhcCCeEEEEeCChhH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLG---A-------KYQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~~g---~-------~~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
++|.|||+|.+|+.+|..|+..| .+|++.||++++..++.+.. + .-.+.+.+++++.|+|+.+.|....
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD 81 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence 78999999999999999999998 89999999998887775532 2 2234577889999999999987554
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcE
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~ 186 (290)
. .++ ...++.|...+|+|-..... .++.+..++.|+..
T Consensus 82 ~-~i~------ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~ 119 (389)
T COG1748 82 L-TIL------KACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITA 119 (389)
T ss_pred H-HHH------HHHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEE
Confidence 3 333 24456777788887555543 56666666666543
No 157
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.50 E-value=2.9e-07 Score=82.17 Aligned_cols=92 Identities=24% Similarity=0.342 Sum_probs=66.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHh-CCCccC--CCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS-LGAKYQ--PSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~-~g~~~~--~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
+++|+|||+|.||+.+++.+...| .+|++++|++++...+++ .|.... +++.+.+.++|+||.++|.+.. ..++
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~- 255 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKIV- 255 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHH-
Confidence 799999999999999999999866 689999999887766655 444322 3456778899999999987554 3333
Q ss_pred ccccccccC-CCCCEEEEecC
Q 022909 147 GKHGAASGM-GPGKGYVDVST 166 (290)
Q Consensus 147 ~~~~~~~~~-~~~~~lin~s~ 166 (290)
+...+.. .++.++||++.
T Consensus 256 --~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 256 --ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred --HHHHhhCCCCCeEEEEeCC
Confidence 1112222 35678899874
No 158
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.49 E-value=6.3e-07 Score=79.66 Aligned_cols=91 Identities=16% Similarity=0.246 Sum_probs=70.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CCC-eEEEEeCCccchhhHHhC----CCcc-CCCHHHHhhcCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AGC-DVTVWNRTKSKCDPLISL----GAKY-QPSPDEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g~-~V~~~d~~~~~~~~~~~~----g~~~-~~~~~~~~~~aDivv~~~p~~~~~~~ 143 (290)
.++++|||+|.+|+..++.+.. ++. +|.+|+|++++.+.+.+. +... +++.+++++++|+|+.++|.+. .
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~---P 201 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT---P 201 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---c
Confidence 5899999999999999999975 564 799999999887776552 2222 4688899999999999998754 4
Q ss_pred HhcccccccccCCCCCEEEEecCCChh
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~~~~ 170 (290)
++ . .+++||++++.+++-.+.
T Consensus 202 l~--~----~~~~~g~hi~~iGs~~p~ 222 (304)
T PRK07340 202 VY--P----EAARAGRLVVAVGAFTPD 222 (304)
T ss_pred ee--C----ccCCCCCEEEecCCCCCC
Confidence 55 1 247999999888765553
No 159
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.48 E-value=7e-07 Score=68.69 Aligned_cols=113 Identities=23% Similarity=0.282 Sum_probs=69.8
Q ss_pred CeEEEEcc-cHhHHHHHHHHHH-CCCeE-EEEeCCccch-----hhH---HhCCCccCCCHHHHhhcCCeEEEEeCChhH
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLK-AGCDV-TVWNRTKSKC-----DPL---ISLGAKYQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~-~g~~V-~~~d~~~~~~-----~~~---~~~g~~~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
+||+|+|+ |+||+.+++.+.. .++++ .+++++++.. ..+ ...++...++++++++.+|++|-.. .++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDA 79 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHH
Confidence 58999999 9999999999998 67775 4778776211 111 1245677789999999999998876 6666
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccC
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~ 192 (290)
+...+ ...++.+..+|--++|-.....+..+.+.++ +.++-+|+|
T Consensus 80 ~~~~~------~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vl~a~Nf 124 (124)
T PF01113_consen 80 VYDNL------EYALKHGVPLVIGTTGFSDEQIDELEELAKK-IPVLIAPNF 124 (124)
T ss_dssp HHHHH------HHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT-SEEEE-SSS
T ss_pred hHHHH------HHHHhCCCCEEEECCCCCHHHHHHHHHHhcc-CCEEEeCCC
Confidence 66555 2223446666665566644443444444333 666666654
No 160
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=98.43 E-value=1.1e-06 Score=78.29 Aligned_cols=111 Identities=13% Similarity=0.246 Sum_probs=82.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CCC-eEEEEeCCccchhhHHh----C-C--CccCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AGC-DVTVWNRTKSKCDPLIS----L-G--AKYQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g~-~V~~~d~~~~~~~~~~~----~-g--~~~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
-.+++|||+|..+....+.+.. ++. +|.+|+|+++..+.+.. . + +..+++.++++++||+|+.++|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 4789999999999999999976 444 79999999988877653 2 2 4677899999999999999998765
Q ss_pred HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHH-HHHcCCcEEeCc
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGH-IKATGASFLEAP 190 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~-l~~~~~~~~~~p 190 (290)
.++ ..++++||++|..++.-.+.. .++... +.+.+.-+++.+
T Consensus 208 -Pil-----~~~~l~~G~hI~aiGad~p~k-~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 208 -PVL-----KAEWLKPGTHINAIGADAPGK-RELDPEVLARADRVVVDSL 250 (330)
T ss_pred -Cee-----cHhhcCCCcEEEecCCCCccc-ccCCHHHHHhcCeEEEcCH
Confidence 555 146789999988776554433 344333 333346677743
No 161
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.42 E-value=9.2e-07 Score=77.69 Aligned_cols=114 Identities=25% Similarity=0.211 Sum_probs=79.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHhC-C----CccCCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-G----AKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~~-g----~~~~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
++++.|+|+|.+|++++..|...| .+|++++|+.++.+.+.+. + +....+..+.+.++|+||.++|....-..-
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~~~~ 202 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSGELP 202 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCCCCC
Confidence 689999999999999999999999 6899999998887766542 1 111113346678899999999865421100
Q ss_pred hcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
. ..-..+.++++.+++|+.-.+.. + .+.+..++.|+.+++
T Consensus 203 ~--~~~~~~~l~~~~~v~DivY~P~~-T-~ll~~A~~~G~~~~~ 242 (278)
T PRK00258 203 L--PPLPLSLLRPGTIVYDMIYGPLP-T-PFLAWAKAQGARTID 242 (278)
T ss_pred C--CCCCHHHcCCCCEEEEeecCCCC-C-HHHHHHHHCcCeecC
Confidence 0 01113457888999999764433 2 566677777776654
No 162
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=98.41 E-value=6.4e-06 Score=72.63 Aligned_cols=190 Identities=17% Similarity=0.112 Sum_probs=116.2
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc--------------cCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--------------YQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~--------------~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
||..+|..|...|++|.+++|+ ++.+.+.+.|+. ..+++++ +...|+|+++++. .++...+
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs-~~~~~~l-- 76 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKA-YQTEEAA-- 76 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccc-hhHHHHH--
Confidence 7899999999999999999997 445556554421 1223344 5689999999976 4567776
Q ss_pred cccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCc----EEeCccCCCCcc--ccCCceEEEec-CCHHHHHHHHHH
Q 022909 148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS----FLEAPVSGSKKP--AEDGQLIFLAA-GDKSLYNTVAPL 220 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~----~~~~p~~~~~~~--~~~~~~~~~~~-~~~~~~~~v~~l 220 (290)
+.+.+.+.+++++|.+..|- ...+.+.+.+.+..+. +..+-..++-.. ...+...+-.. +..+..+.+.++
T Consensus 77 -~~l~~~l~~~~~iv~~qNG~-g~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~ 154 (293)
T TIGR00745 77 -ALLLPLIGKNTKVLFLQNGL-GHEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAEL 154 (293)
T ss_pred -HHhHhhcCCCCEEEEccCCC-CCHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHH
Confidence 45667778888888776553 3344555555433211 111111111000 11122221111 112456678888
Q ss_pred HHHhCCcEEEeCCcchHHHHHHHHHHHH---------------------HHH-HHHHHHHHHHHHCCCC--HHHHHHHHh
Q 022909 221 LDIMGKSRFYLGDVGNGAAMKLVVNMIM---------------------GRS-CTFSYSFLTLEFVDFL--INTVTMFLQ 276 (290)
Q Consensus 221 l~~~G~~~~~~~~~g~a~~~k~~~n~~~---------------------~~~-~~~~ea~~l~~~~G~~--~~~~~~~i~ 276 (290)
|+..|..+....+.....|.|++.|... ..+ ..+.|...++++.|++ .+.+.+.+.
T Consensus 155 l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~ 234 (293)
T TIGR00745 155 LNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDEVEELVR 234 (293)
T ss_pred HHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 8888887777788888888888766421 223 5678999999999865 444555554
Q ss_pred hc
Q 022909 277 SF 278 (290)
Q Consensus 277 ~~ 278 (290)
..
T Consensus 235 ~~ 236 (293)
T TIGR00745 235 AV 236 (293)
T ss_pred HH
Confidence 43
No 163
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.40 E-value=1.1e-06 Score=78.91 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=70.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CCC-eEEEEeCCccchhhHHh-----CCC--ccCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AGC-DVTVWNRTKSKCDPLIS-----LGA--KYQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g~-~V~~~d~~~~~~~~~~~-----~g~--~~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
.++++|||+|.+|+..+..+.. .+. +|.+|+|++++.+++.+ .++ ..+++.+++++++|+|+.++|.+
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~--- 203 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK--- 203 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC---
Confidence 5789999999999999988753 454 79999999988776654 233 34678899999999999999865
Q ss_pred HHHhcccccccccCCCCCEEEEecCCCh
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDG 169 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~ 169 (290)
..++ . +++++|++++.+++-.+
T Consensus 204 ~p~i-----~-~~l~~G~hV~~iGs~~p 225 (325)
T PRK08618 204 TPVF-----S-EKLKKGVHINAVGSFMP 225 (325)
T ss_pred Ccch-----H-HhcCCCcEEEecCCCCc
Confidence 2444 2 56799999988876544
No 164
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.39 E-value=2.7e-06 Score=73.87 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=72.8
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
++|+|+|+ |+||+.+++.+... ++++. ++|+++++.......++...++++++++++|+|+.++|... .....
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~-~~~~~--- 77 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEA-TLENL--- 77 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHH-HHHHH---
Confidence 68999998 99999999998864 67755 68888765443333456667899999989999998875433 34433
Q ss_pred ccccccCCCCCEEEEecCC-ChhHHHHHHHHHHHcCCcEEeCccC
Q 022909 149 HGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPVS 192 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~-~~~~~~~l~~~l~~~~~~~~~~p~~ 192 (290)
...++.|..++-.+++ ...+.+++.+ .. +++.++-.|.+
T Consensus 78 ---~~al~~G~~vvigttG~s~~~~~~l~~-aa-~~~~v~~s~n~ 117 (257)
T PRK00048 78 ---EFALEHGKPLVIGTTGFTEEQLAELEE-AA-KKIPVVIAPNF 117 (257)
T ss_pred ---HHHHHcCCCEEEECCCCCHHHHHHHHH-Hh-cCCCEEEECcc
Confidence 3345556655533333 3444445555 33 45555555544
No 165
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.39 E-value=1.2e-06 Score=76.19 Aligned_cols=74 Identities=24% Similarity=0.271 Sum_probs=61.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|+|||. |.||+.+|..|...|+.|++|... +.++.+.+++||+|+.+++.+...+.
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~------ 217 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTK------ 217 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCH------
Confidence 899999999 999999999999999999998321 12678889999999999988665433
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.++++|+++||++..
T Consensus 218 ---~~ik~GavVIDvgin 232 (284)
T PRK14179 218 ---EFVKEGAVVIDVGMN 232 (284)
T ss_pred ---HHccCCcEEEEecce
Confidence 348999999999743
No 166
>PRK06823 ornithine cyclodeaminase; Validated
Probab=98.39 E-value=1e-06 Score=78.59 Aligned_cols=91 Identities=20% Similarity=0.290 Sum_probs=71.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-C-CeEEEEeCCccchhhHHh----CCC--ccCCCHHHHhhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-G-CDVTVWNRTKSKCDPLIS----LGA--KYQPSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g-~~V~~~d~~~~~~~~~~~----~g~--~~~~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
.++++|||+|..++..++.+... . -+|.+|+|++++.+.+.+ .++ ..+++.+++++++|||+.+++.+ .
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~---~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR---E 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---C
Confidence 58999999999999999988753 3 389999999998776654 233 34678999999999999998754 3
Q ss_pred HHhcccccccccCCCCCEEEEecCCCh
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDG 169 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~ 169 (290)
.++ + .++++||++++.+++-.+
T Consensus 205 P~~--~---~~~l~~G~hi~~iGs~~p 226 (315)
T PRK06823 205 PLL--Q---AEDIQPGTHITAVGADSP 226 (315)
T ss_pred cee--C---HHHcCCCcEEEecCCCCc
Confidence 555 2 357899999988876555
No 167
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.38 E-value=7.6e-07 Score=70.72 Aligned_cols=101 Identities=18% Similarity=0.277 Sum_probs=72.1
Q ss_pred EEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC--------------CCHHHHhhcCCeEEEEeCChh
Q 022909 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--------------PSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 74 IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--------------~~~~~~~~~aDivv~~~p~~~ 139 (290)
|+|+|.|.||..+|..|+..|++|.+++|++ +.+.+.+.|+... .+..+..+..|+|++++. ..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK-a~ 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK-AY 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS-GG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec-cc
Confidence 7899999999999999999999999999988 6666666544321 112245678999999985 46
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHH
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 180 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~ 180 (290)
++...+ +.+.+.+.+++.++..-++ ....+.+.+.+.
T Consensus 79 ~~~~~l---~~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~ 115 (151)
T PF02558_consen 79 QLEQAL---QSLKPYLDPNTTIVSLQNG-MGNEEVLAEYFP 115 (151)
T ss_dssp GHHHHH---HHHCTGEETTEEEEEESSS-SSHHHHHHCHST
T ss_pred chHHHH---HHHhhccCCCcEEEEEeCC-CCcHHHHHHHcC
Confidence 677777 4466777788777766555 344455555553
No 168
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.35 E-value=3.7e-06 Score=73.28 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=69.2
Q ss_pred CeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHh---CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS---LGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~---~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
+||||||+|+||+.+++.+... +.++. ++++... .+...+ .++..+++++++-.+.|+|+.|.|.... ....
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~e~~- 78 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-KEHV- 78 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-HHHH-
Confidence 6899999999999999999875 45554 4444322 111111 2566677888874468999999976543 3333
Q ss_pred ccccccccCCCCCEEEEecCCC---hhHHHHHHHHHHHcCCc
Q 022909 147 GKHGAASGMGPGKGYVDVSTVD---GDTSKLINGHIKATGAS 185 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~---~~~~~~l~~~l~~~~~~ 185 (290)
...++.|..++-.+.+. ....+.|.+..++.+..
T Consensus 79 -----~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 79 -----VPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred -----HHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 34466777776555542 33345677777777765
No 169
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=98.35 E-value=1.1e-06 Score=77.83 Aligned_cols=109 Identities=7% Similarity=0.096 Sum_probs=77.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CC-eEEEEeCCccchhhHHhC-----C--CccCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GC-DVTVWNRTKSKCDPLISL-----G--AKYQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~-~V~~~d~~~~~~~~~~~~-----g--~~~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
.++++|||+|..|...++.+... +. +|.+|+|++++.+.+.+. + +..+++.++++++||+|+.++|.+.
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~-- 194 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT-- 194 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC--
Confidence 58999999999999999988763 43 799999999987776541 3 4456899999999999999987643
Q ss_pred HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHH-HHcCCcEEe
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHI-KATGASFLE 188 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l-~~~~~~~~~ 188 (290)
.++ . .++++||.++.-+++-.+. ..++...+ .+....++|
T Consensus 195 -P~~--~---~~~l~pg~hV~aiGs~~p~-~~El~~~~l~~a~~v~vD 235 (301)
T PRK06407 195 -PIF--N---RKYLGDEYHVNLAGSNYPN-RREAEHSVLNDADIVVTE 235 (301)
T ss_pred -cEe--c---HHHcCCCceEEecCCCCCC-cccCCHHHHHhCCEEEEC
Confidence 554 1 3578899887766554442 33343333 322234555
No 170
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.34 E-value=5.4e-06 Score=73.57 Aligned_cols=109 Identities=14% Similarity=0.163 Sum_probs=72.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCc-cchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTK-SKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~-~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
..||+|||+|+||+.+++.+... ++++. ++++++ ++.. ...++....+.++++.+.|+|++|+|........
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~--- 77 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQ--- 77 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHH---
Confidence 47999999999999999999865 67866 578885 3222 2234445557777888999999999875553332
Q ss_pred cccccccCCCCCEEEEecCC---ChhHHHHHHHHHHH-cCCcEEe
Q 022909 148 KHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKA-TGASFLE 188 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~---~~~~~~~l~~~l~~-~~~~~~~ 188 (290)
.+.++.|.-+|+..-. .+...+.+.++.++ +++.++.
T Consensus 78 ----~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~ 118 (324)
T TIGR01921 78 ----APYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVIS 118 (324)
T ss_pred ----HHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3446677777766432 12334566666665 3444444
No 171
>PRK06046 alanine dehydrogenase; Validated
Probab=98.29 E-value=1.7e-06 Score=77.72 Aligned_cols=90 Identities=20% Similarity=0.311 Sum_probs=69.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CCC-eEEEEeCCccchhhHHhC-----C--CccCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AGC-DVTVWNRTKSKCDPLISL-----G--AKYQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g~-~V~~~d~~~~~~~~~~~~-----g--~~~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
.++|+|||+|.+|+..++.+.. .+. +|.+|||++++.+.+.+. + +..+++.+++++ +|+|++++|...
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~-- 205 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK-- 205 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC--
Confidence 4789999999999999999874 344 688999999887766541 3 334678899887 999999998743
Q ss_pred HHHhcccccccccCCCCCEEEEecCCCh
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDG 169 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~ 169 (290)
.++ . .+++++|+++..++.-.+
T Consensus 206 -P~~--~---~~~l~~g~hV~~iGs~~p 227 (326)
T PRK06046 206 -PVV--K---AEWIKEGTHINAIGADAP 227 (326)
T ss_pred -cEe--c---HHHcCCCCEEEecCCCCC
Confidence 444 1 356799999888875554
No 172
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.29 E-value=3.3e-06 Score=68.29 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=60.9
Q ss_pred CCeEEEEcccHh-HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIM-GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~i-G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||.|.| |..+++.|.+.|.+|.+.+|+. .++.+.++++|+||.+++.+. ++ .+
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~----ii--~~ 103 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG----LV--KG 103 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc----ee--cH
Confidence 799999999996 8889999999999999999863 256678999999999998743 34 22
Q ss_pred cccccCCCCCEEEEecCCC
Q 022909 150 GAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~ 168 (290)
+.++++.++||++...
T Consensus 104 ---~~~~~~~viIDla~pr 119 (168)
T cd01080 104 ---DMVKPGAVVIDVGINR 119 (168)
T ss_pred ---HHccCCeEEEEccCCC
Confidence 3467789999997544
No 173
>PLN00203 glutamyl-tRNA reductase
Probab=98.28 E-value=1.2e-06 Score=82.86 Aligned_cols=69 Identities=26% Similarity=0.401 Sum_probs=56.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC--CC----ccCCCHHHHhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--GA----KYQPSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~--g~----~~~~~~~~~~~~aDivv~~~p~~~ 139 (290)
+++|+|||+|.||+.+++.|...|. +|++++|++++.+.+.+. +. ...+++.+.+.++|+||.++|.+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSET 341 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCC
Confidence 6899999999999999999999997 799999999888777652 22 123466778899999999986543
No 174
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.27 E-value=2.3e-06 Score=76.91 Aligned_cols=89 Identities=15% Similarity=0.303 Sum_probs=69.0
Q ss_pred CCeEEEEcccHhHHHHHHHHH-HCCC-eEEEEeCCccchhhHHhC-----CC--ccCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLL-KAGC-DVTVWNRTKSKCDPLISL-----GA--KYQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~-~~g~-~V~~~d~~~~~~~~~~~~-----g~--~~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
.++++|||+|.+|+..++.+. ..+. +|.+|+|++++.+.+.+. ++ ...++++++++++|+|+.++|.+.
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~-- 206 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET-- 206 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC--
Confidence 578999999999999999997 4664 799999999887776541 43 235788999999999999998743
Q ss_pred HHHhcccccccccCCCCCEEEEecCC
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
.++ . .+++++|.++..++.-
T Consensus 207 -p~i--~---~~~l~~g~~i~~vg~~ 226 (326)
T TIGR02992 207 -PIL--H---AEWLEPGQHVTAMGSD 226 (326)
T ss_pred -cEe--c---HHHcCCCcEEEeeCCC
Confidence 344 1 2467899988777543
No 175
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=98.26 E-value=6.6e-05 Score=64.14 Aligned_cols=113 Identities=13% Similarity=0.125 Sum_probs=85.8
Q ss_pred CCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccC
Q 022909 114 GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVS 192 (290)
Q Consensus 114 g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~ 192 (290)
|++.++|-.|+++++|++++-+|....+..++ +++++.+++|+++.|+++.++...-.+.+.++++.+.+.+ ||-.
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Ii---kkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaa 202 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDII---KKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHPGC 202 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHH---HHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCCCC
Confidence 67778888899999999999999988778887 6789999999999999999988766666666666565554 4422
Q ss_pred CCCccccCCceEEEec-CCHHHHHHHHHHHHHhCCcEEEeC
Q 022909 193 GSKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIMGKSRFYLG 232 (290)
Q Consensus 193 ~~~~~~~~~~~~~~~~-~~~~~~~~v~~ll~~~G~~~~~~~ 232 (290)
.+... +...+..+ .+++.++++.++.+..++.+|.+.
T Consensus 203 --VPgt~-~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 203 --VPEMK-GQVYIAEGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred --CCCCC-CceEeecccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 22222 33333322 367889999999999999988764
No 176
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=98.25 E-value=6.7e-05 Score=64.00 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=84.8
Q ss_pred CCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccC
Q 022909 114 GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVS 192 (290)
Q Consensus 114 g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~ 192 (290)
|++.++|-.|+++++|++++-+|....+..++ +++.+.+++|+++.|+++.++...-...+.++++.+.+.+ ||-.
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Ii---kki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDII---EKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHH---HHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 67777888889999999999999988788887 6789999999999999999988766666666666555544 4422
Q ss_pred CCCccccCCceEEEec-CCHHHHHHHHHHHHHhCCcEEEeCC
Q 022909 193 GSKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIMGKSRFYLGD 233 (290)
Q Consensus 193 ~~~~~~~~~~~~~~~~-~~~~~~~~v~~ll~~~G~~~~~~~~ 233 (290)
-+.. .+...+-.+ .+++.++++.++.+..|+.+|.+..
T Consensus 205 VPgt---~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA 243 (342)
T PRK00961 205 VPEM---KGQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPA 243 (342)
T ss_pred CCCC---CCceecccccCCHHHHHHHHHHHHHhCCCeeecch
Confidence 1111 133222111 3678899999999999999887643
No 177
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.25 E-value=4.1e-06 Score=73.69 Aligned_cols=111 Identities=20% Similarity=0.189 Sum_probs=78.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC-----C-C--ccCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-----G-A--KYQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~-----g-~--~~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
+++|.|||+|..|++++..|...|. +|+++||+.++.+.+.+. . . ...+++.+.++++|+||.++|....-
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~ 206 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGMAK 206 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCCC
Confidence 6899999999999999999999997 799999999887776541 1 1 11234455678899999998854211
Q ss_pred H-H-HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 142 M-D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 142 ~-~-~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
. . -+ + .+.++++.+++|+.-.+..+ .+.+..++.|...++
T Consensus 207 ~~~~~~--~---~~~l~~~~~v~DivY~P~~T--~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 207 HPGLPL--P---AELLRPGLWVADIVYFPLET--ELLRAARALGCRTLD 248 (284)
T ss_pred CCCCCC--C---HHHcCCCcEEEEeeeCCCCC--HHHHHHHHCCCeEec
Confidence 0 1 11 1 23477888899986655432 566667777766654
No 178
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.24 E-value=1.1e-05 Score=72.64 Aligned_cols=109 Identities=17% Similarity=0.223 Sum_probs=78.5
Q ss_pred CCeEEEEcccHhHH-HHHHHHHHCCC---eEEEEeCCccchhhHHh-CCC-ccCCCHHHHhhc--CCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGT-PMAQNLLKAGC---DVTVWNRTKSKCDPLIS-LGA-KYQPSPDEVAAS--CDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~-~la~~l~~~g~---~V~~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~~--aDivv~~~p~~~~~~ 142 (290)
.+||||||+|.++. ..+..+...+. -|.++|+++++.+.+.+ .++ ..++++++++++ .|+|++++|...+..
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e 82 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAE 82 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHH
Confidence 58999999997664 58888887762 46688999998877666 666 377899999986 599999999866655
Q ss_pred HHhcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcE
Q 022909 143 DVACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~ 186 (290)
..+ ..++.|+.++--= .....+.+++.+..++.+..+
T Consensus 83 ~~~-------~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l 121 (342)
T COG0673 83 LAL-------AALEAGKHVLCEKPLALTLEEAEELVELARKAGVKL 121 (342)
T ss_pred HHH-------HHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence 443 4455666554221 344566678888888776544
No 179
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=98.22 E-value=2e-06 Score=76.84 Aligned_cols=93 Identities=17% Similarity=0.275 Sum_probs=61.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CCC-eEEEEeCCccchhhHHh---C-C--CccCCCHHHHhhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AGC-DVTVWNRTKSKCDPLIS---L-G--AKYQPSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g~-~V~~~d~~~~~~~~~~~---~-g--~~~~~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
.++++|||+|..|...++.+.. ++. +|.+|+|++++.+.+.+ . + +..+++.++++++||+|+.++|.+...
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~- 206 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA- 206 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-
Confidence 4789999999999999999875 554 79999999988777655 2 3 345789999999999999998765422
Q ss_pred HHhcccccccccCCCCCEEEEecCCCh
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDG 169 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~ 169 (290)
.++ + .+++++|++|+.++...+
T Consensus 207 P~~--~---~~~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 207 PVF--D---AEWLKPGTHINAIGSYTP 228 (313)
T ss_dssp ESB------GGGS-TT-EEEE-S-SST
T ss_pred ccc--c---HHHcCCCcEEEEecCCCC
Confidence 455 2 457899999988876555
No 180
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.22 E-value=3.8e-06 Score=75.59 Aligned_cols=87 Identities=22% Similarity=0.326 Sum_probs=66.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CC-CeEEEEeCCccchhhHHh-----CCCc--cCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLIS-----LGAK--YQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g-~~V~~~d~~~~~~~~~~~-----~g~~--~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
.++|+|||+|.+|+.++..+.. .+ .+|.+|+|++++.+.+.+ .++. ..+++++++.++|+|+.++|...
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~-- 209 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE-- 209 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC--
Confidence 4789999999999999998875 45 479999999988877755 1333 35788999999999999988643
Q ss_pred HHHhcccccccccCCCCCEEEEec
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
.++ . .+++++++.+..++
T Consensus 210 -p~i--~---~~~l~~g~~v~~vg 227 (330)
T PRK08291 210 -PIL--K---AEWLHPGLHVTAMG 227 (330)
T ss_pred -cEe--c---HHHcCCCceEEeeC
Confidence 344 1 23467888776554
No 181
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.22 E-value=3e-06 Score=74.73 Aligned_cols=93 Identities=18% Similarity=0.180 Sum_probs=76.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+|++.|.|+|..|+.+|.+++..|.+|+++..+|-++-++.-.|..+. ..+++...+||+|.++-. ++++ ..+
T Consensus 209 GK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGn----kdVi--~~e 281 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGN----KDVI--RKE 281 (420)
T ss_pred CceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCC----cCcc--CHH
Confidence 899999999999999999999999999999998866555444676655 789999999999988644 4555 455
Q ss_pred ccccCCCCCEEEEecCCChh
Q 022909 151 AASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~ 170 (290)
-+..||+++++.|.+.-...
T Consensus 282 h~~~MkDgaIl~N~GHFd~E 301 (420)
T COG0499 282 HFEKMKDGAILANAGHFDVE 301 (420)
T ss_pred HHHhccCCeEEeccccccee
Confidence 68889999999999765544
No 182
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=98.21 E-value=7.1e-06 Score=77.37 Aligned_cols=103 Identities=19% Similarity=0.310 Sum_probs=74.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-CCccCCCHHHH--hhcCCeEEEEeCChhHHHHHhcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEV--AASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~--~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
+++++|+|+|.+|++++..|...|++|.+++|++++.+.+.+. +.... +.+++ +.++|+||.|+|........
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~-~~~~~~~l~~~DiVInatP~g~~~~~~--- 407 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAF-PLESLPELHRIDIIINCLPPSVTIPKA--- 407 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccee-chhHhcccCCCCEEEEcCCCCCcchhH---
Confidence 6899999999999999999999999999999998776665542 21111 22222 56899999999976532211
Q ss_pred cccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+. .+++|+...+..+. +.+..++.|+..++
T Consensus 408 -------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~ 437 (477)
T PRK09310 408 -------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIY 437 (477)
T ss_pred -------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEEC
Confidence 11 37889987766544 77777887776654
No 183
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=98.20 E-value=2e-05 Score=70.91 Aligned_cols=110 Identities=11% Similarity=0.147 Sum_probs=79.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC--CCeE-EEEeCCccchhhHHh-CCCccCCCHHHHhhcCCeEEEEeCCh--hHH-HH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA--GCDV-TVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADP--ESA-MD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~--g~~V-~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivv~~~p~~--~~~-~~ 143 (290)
..||||||+ .+|+..++.+... +.++ .++|+++++.+++++ .|+..+++.++++++.|++++++|.+ ... ..
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e 81 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSA 81 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHH
Confidence 588999999 6899999999875 4665 478999988877766 67777889999999999999999752 122 22
Q ss_pred HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEE
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
+. ...++.|..++--=-....+.+++.+..+++++.+.
T Consensus 82 ~a------~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 82 LA------RALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HH------HHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 22 345666766554333335666778888888776654
No 184
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.20 E-value=2.8e-06 Score=68.90 Aligned_cols=93 Identities=25% Similarity=0.280 Sum_probs=67.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc---c-----------------------CCCHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK---Y-----------------------QPSPDEV 124 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~---~-----------------------~~~~~~~ 124 (290)
+.+|.|+|.|+.|+.-++.+...|++|..+|.++++.+.....+.. . ...+.+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 99 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEF 99 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHH
Confidence 6899999999999999999999999999999998776665553221 1 1135667
Q ss_pred hhcCCeEEEEeC-ChhHHHHHhcccccccccCCCCCEEEEec
Q 022909 125 AASCDVTFAMLA-DPESAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 125 ~~~aDivv~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
++.+|+|+.++- .......++ .++..+.|+++.+|+|+|
T Consensus 100 i~~~d~vI~~~~~~~~~~P~lv--t~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 100 IAPADIVIGNGLYWGKRAPRLV--TEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHH-SEEEEHHHBTTSS---SB--EHHHHHTSSTTEEEEETT
T ss_pred HhhCcEEeeecccCCCCCCEEE--EhHHhhccCCCceEEEEE
Confidence 788999997543 334455666 566788899999999996
No 185
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.18 E-value=1.7e-06 Score=80.32 Aligned_cols=69 Identities=26% Similarity=0.420 Sum_probs=55.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHh-CCCc--cCCCHHHHhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS-LGAK--YQPSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~-~g~~--~~~~~~~~~~~aDivv~~~p~~~ 139 (290)
+++|+|||+|.||..+++.|...| .+|++++|++++...+++ .+.. ...++.+.+.++|+|+.+++.+.
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 689999999999999999999999 689999999887665554 3322 22456678889999999987644
No 186
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.18 E-value=6.9e-06 Score=71.60 Aligned_cols=74 Identities=26% Similarity=0.363 Sum_probs=61.5
Q ss_pred CCeEEEEcccHh-HHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIM-GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~i-G~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||.|.+ |+.++..|...|..|+++... +.++.+.++++|+||.+++.+ +++ +
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~----~~i--~- 216 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKR----NVL--T- 216 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCc----Ccc--C-
Confidence 899999999888 999999999999999987643 236778899999999999863 344 2
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.+++++|+++||++..
T Consensus 217 --~~~ik~gavVIDVGin 232 (285)
T PRK14189 217 --ADMVKPGATVIDVGMN 232 (285)
T ss_pred --HHHcCCCCEEEEcccc
Confidence 3678999999999743
No 187
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.17 E-value=1.3e-05 Score=71.30 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=49.6
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHH----h--------CCCccCCCHHHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----S--------LGAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~----~--------~g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
+||+|||+|.||..+|..++..|+ +|.++|++++...... + ..+....+.++ +++||+||++.+.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~ 79 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGL 79 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCC
Confidence 689999999999999999999876 8999999765433111 0 01334467776 7899999999984
No 188
>PRK11579 putative oxidoreductase; Provisional
Probab=98.17 E-value=2.6e-05 Score=70.71 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=71.5
Q ss_pred CCeEEEEcccHhHHH-HHHHHHHC-CCeEE-EEeCCccchhhHHhC-CCccCCCHHHHhh--cCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAA--SCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~-la~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~ 144 (290)
..||||||+|.||+. .+..+... ++++. ++|+++++.. ++. +...+++++++++ +.|+|++++|...+.+..
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~ 81 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLA 81 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence 479999999999984 56766554 67765 7888875533 222 4556789999996 479999999986654443
Q ss_pred hcccccccccCCCCCEEEEec--CCChhHHHHHHHHHHHcCCcE
Q 022909 145 ACGKHGAASGMGPGKGYVDVS--TVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s--~~~~~~~~~l~~~l~~~~~~~ 186 (290)
+ ..++.|+.++--= .....+.+++.++.++.++.+
T Consensus 82 ~-------~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 82 K-------AALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred H-------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 3 3455666554221 234455567777777766543
No 189
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.15 E-value=1.5e-05 Score=71.27 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=48.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhh--H--Hh----CC----CccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDP--L--IS----LG----AKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~--~--~~----~g----~~~~~~~~~~~~~aDivv~~~ 135 (290)
.+||+|||+|.+|..++..+...| .++.++|+++++.+. + .. .+ +....+.+ .+++||+|+++.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 689999999999999999999888 689999998765332 1 11 11 12235666 679999999998
No 190
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.15 E-value=3.1e-05 Score=67.52 Aligned_cols=114 Identities=16% Similarity=0.210 Sum_probs=72.9
Q ss_pred CeEEEEc-ccHhHHHHHHHHHH-CCCeEE-EEeCC-ccch-hhHHh------CCCccCCCHHHHhhcCCeEEEEeCChhH
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLK-AGCDVT-VWNRT-KSKC-DPLIS------LGAKYQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~-~g~~V~-~~d~~-~~~~-~~~~~------~g~~~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
+||+|+| +|+||+.+++.+.. .++++. ++||. ++.. ....+ .++..+++++++...+|+|+.++|. ..
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p-~~ 80 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTP-EG 80 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCCh-HH
Confidence 6899999 69999999999986 477755 67753 2221 11111 3456667888885578999999855 44
Q ss_pred HHHHhcccccccccCCCCCEEEE-ecCCChhHHHHHHHHHHHcCCcEEeCccC
Q 022909 141 AMDVACGKHGAASGMGPGKGYVD-VSTVDGDTSKLINGHIKATGASFLEAPVS 192 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin-~s~~~~~~~~~l~~~l~~~~~~~~~~p~~ 192 (290)
....+ ...++.|..+|- ++.......+++.++.++.++.++-.|++
T Consensus 81 ~~~~~------~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~Nf 127 (266)
T TIGR00036 81 VLNHL------KFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNF 127 (266)
T ss_pred HHHHH------HHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcc
Confidence 44443 344556655544 43334445566777766666776666654
No 191
>PRK07589 ornithine cyclodeaminase; Validated
Probab=98.15 E-value=5.9e-06 Score=74.46 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=69.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CCC-eEEEEeCCccchhhHHh----CC--CccCCCHHHHhhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AGC-DVTVWNRTKSKCDPLIS----LG--AKYQPSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g~-~V~~~d~~~~~~~~~~~----~g--~~~~~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
..+++|||+|..+...++.+.. +.. +|.+|+|++++.+.+.+ .+ +..+++.++++++||+|+.++|.+. ..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CC
Confidence 4789999999999999887764 343 89999999988776553 23 3456899999999999999986432 12
Q ss_pred HHhcccccccccCCCCCEEEEecCCCh
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDG 169 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~ 169 (290)
.++ . .+++++|+++.-+++-.+
T Consensus 208 Pvl--~---~~~lkpG~hV~aIGs~~p 229 (346)
T PRK07589 208 TIL--T---DDMVEPGMHINAVGGDCP 229 (346)
T ss_pred cee--c---HHHcCCCcEEEecCCCCC
Confidence 444 1 357899998877765444
No 192
>PRK06199 ornithine cyclodeaminase; Validated
Probab=98.14 E-value=4.5e-06 Score=76.23 Aligned_cols=91 Identities=18% Similarity=0.252 Sum_probs=69.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CC-C-eEEEEeCCccchhhHHh----C--C---CccCCCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AG-C-DVTVWNRTKSKCDPLIS----L--G---AKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g-~-~V~~~d~~~~~~~~~~~----~--g---~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
.++++|||+|..++...+.+.. +. . +|.+|+|++++.+.+.+ . + +..+++.++++++||||+.+++..
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4789999999999999999876 42 3 89999999988776543 1 2 445689999999999999998753
Q ss_pred h---HHHHHhcccccccccCCCCCEEEEecC
Q 022909 139 E---SAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 139 ~---~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
. ....++ . .+++++|++|+..+.
T Consensus 235 ~~~~s~~Pv~--~---~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 235 TGDPSTYPYV--K---REWVKPGAFLLMPAA 260 (379)
T ss_pred CCCCCcCcEe--c---HHHcCCCcEEecCCc
Confidence 3 233555 1 357889998876543
No 193
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.14 E-value=2.5e-06 Score=79.32 Aligned_cols=69 Identities=26% Similarity=0.410 Sum_probs=55.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh-CCCcc--CCCHHHHhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS-LGAKY--QPSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~-~g~~~--~~~~~~~~~~aDivv~~~p~~~ 139 (290)
+++|+|||+|.||+.+++.|...|. +|++++|++++...+++ .|... ..++.+.+.++|+||.++|.+.
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC
Confidence 7899999999999999999999997 79999999887765554 34222 2355667889999999987654
No 194
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.14 E-value=5.4e-06 Score=68.82 Aligned_cols=95 Identities=21% Similarity=0.150 Sum_probs=65.9
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-----CCc--c--CCC---HHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAK--Y--QPS---PDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~--~--~~~---~~~~~~~aDivv~~~p~ 137 (290)
++++.|+|. |.+|+.+++.|...|++|.+++|+.++.+.+.+. +.. . ..+ +.+.++++|+|+.+.|.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~ 107 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAA 107 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCC
Confidence 689999995 9999999999999999999999998776655431 111 1 122 34677889999999886
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEecCCChhH
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~ 171 (290)
...+... .....+++.+++|++.....+
T Consensus 108 g~~~~~~------~~~~~~~~~vv~D~~~~~~~~ 135 (194)
T cd01078 108 GVELLEK------LAWAPKPLAVAADVNAVPPVG 135 (194)
T ss_pred Cceechh------hhcccCceeEEEEccCCCCCC
Confidence 5531111 112344577889887665543
No 195
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.13 E-value=1.7e-05 Score=70.68 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=48.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHH----hC----C----CccCCCHHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----SL----G----AKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~----~~----g----~~~~~~~~~~~~~aDivv~~~p 136 (290)
++||+|||+|.||..+|..+...|. +|.++|+++++.+... +. + +....+.+ .+++||+||++..
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~-~~~~aDiVii~~~ 79 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYE-DIAGSDVVVITAG 79 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHH-HHCCCCEEEECCC
Confidence 3799999999999999999998765 9999999876543211 10 1 11234554 5799999999863
No 196
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.12 E-value=1.3e-05 Score=71.81 Aligned_cols=66 Identities=23% Similarity=0.236 Sum_probs=49.1
Q ss_pred CCCCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchh--hH---Hh---CC----CccCCCHHHHhhcCCeEEEEe
Q 022909 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCD--PL---IS---LG----AKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 69 ~~~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~--~~---~~---~g----~~~~~~~~~~~~~aDivv~~~ 135 (290)
...+||+|||+|.||..+|..++..|. +|.++|++++... .+ .. .+ +....+.+ .+++||+||++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~-~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYE-DIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHH-HhCCCCEEEECC
Confidence 336899999999999999999998885 8999999987532 11 00 11 23335664 679999999966
No 197
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.12 E-value=1.2e-05 Score=75.63 Aligned_cols=93 Identities=19% Similarity=0.285 Sum_probs=69.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc--CC---------------C----------HHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY--QP---------------S----------PDE 123 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~--~~---------------~----------~~~ 123 (290)
+.++.|+|+|.+|...++.+...|.+|+++|+++++.+.++..|... .+ + +.+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e 243 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAA 243 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999998877766655443 00 0 334
Q ss_pred HhhcCCeEEEEeCChh-HHHHHhcccccccccCCCCCEEEEec
Q 022909 124 VAASCDVTFAMLADPE-SAMDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 124 ~~~~aDivv~~~p~~~-~~~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
.++++|+|+.++--+. ....++ .++..+.||+|.++||++
T Consensus 244 ~~~~~DIVI~TalipG~~aP~Li--t~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 244 QAKEVDIIITTALIPGKPAPKLI--TEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HhCCCCEEEECcccCCCCCCeee--hHHHHhhCCCCCEEEEee
Confidence 5678999998871111 011233 344578899999999997
No 198
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.12 E-value=1.2e-05 Score=70.19 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=61.0
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||.|. +|+.++..|...|..|++++++. .++.+.++++|+||.+++.+. ++ ..
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~----~i--~~ 217 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPG----LV--TK 217 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCc----cc--CH
Confidence 89999999988 99999999999999999998642 257788999999999998743 33 22
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
+++++|+++||++.
T Consensus 218 ---~~vk~gavVIDvGi 231 (286)
T PRK14175 218 ---DVVKEGAVIIDVGN 231 (286)
T ss_pred ---HHcCCCcEEEEcCC
Confidence 35789999999975
No 199
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.09 E-value=4.3e-06 Score=70.51 Aligned_cols=109 Identities=11% Similarity=0.110 Sum_probs=70.5
Q ss_pred CCeEEEEcccHhHHHHHHHH--HHCCCeEE-EEeCCccchhhHHh-CCCccCCCHHHHhhc--CCeEEEEeCChhH---H
Q 022909 71 PGRIGFLGMGIMGTPMAQNL--LKAGCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAAS--CDVTFAMLADPES---A 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l--~~~g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~--aDivv~~~p~~~~---~ 141 (290)
..+|+|||+|.+|+.+++.+ ...|+++. ++|+++++...... ..+...+++++++++ .|+|++++|.... .
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~ 163 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVA 163 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHH
Confidence 57899999999999999864 34678766 67887654432111 112233567777765 9999999997654 2
Q ss_pred HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHH
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA 181 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~ 181 (290)
..+. .......+....+.+|+-++..++..++...|..
T Consensus 164 ~~l~--~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 164 DRLV--EAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred HHHH--HcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 2333 2333444555666677777777666666666653
No 200
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.08 E-value=1.4e-05 Score=61.21 Aligned_cols=91 Identities=19% Similarity=0.315 Sum_probs=57.2
Q ss_pred eEEEEc-ccHhHHHHHHHHHHC-CCeEEEE-eCCccchhhHHhCC--Cc-c-CC--CHHHH-hhcCCeEEEEeCChhHHH
Q 022909 73 RIGFLG-MGIMGTPMAQNLLKA-GCDVTVW-NRTKSKCDPLISLG--AK-Y-QP--SPDEV-AASCDVTFAMLADPESAM 142 (290)
Q Consensus 73 ~IgiiG-~G~iG~~la~~l~~~-g~~V~~~-d~~~~~~~~~~~~g--~~-~-~~--~~~~~-~~~aDivv~~~p~~~~~~ 142 (290)
||+|+| .|.+|..++..+... ++++... +++.++.+.++..+ +. . .. +.+++ ..++|+|++++|.... .
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~-~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVS-K 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHH-H
Confidence 589999 599999999999884 7777655 55443333333211 10 0 01 11122 2489999999987644 3
Q ss_pred HHhcccccccccCCCCCEEEEecCC
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
..+ ......+++|+++||+|+.
T Consensus 80 ~~~---~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 80 EIA---PLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred HHH---HHHHhhhcCCCEEEECCcc
Confidence 433 1124457899999999864
No 201
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=98.07 E-value=2.7e-05 Score=68.49 Aligned_cols=91 Identities=15% Similarity=0.194 Sum_probs=64.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccch--hhHHhCCCcc-CCCHHHHhh-----cCCeEEEEeCChhH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKC--DPLISLGAKY-QPSPDEVAA-----SCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~--~~~~~~g~~~-~~~~~~~~~-----~aDivv~~~p~~~~ 140 (290)
+.+|||||+|+||+.+...+... +.++. ++|+++++. ...++.|+.. .++.+++++ +.|+|+.++|...+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 68999999999999988887754 55654 778887542 3344467765 478999985 47889999876544
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCC
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~ 168 (290)
.+.. ....+.|..+|+.+...
T Consensus 84 ~e~a-------~~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 84 VRHA-------AKLREAGIRAIDLTPAA 104 (302)
T ss_pred HHHH-------HHHHHcCCeEEECCccc
Confidence 3332 23456788888887443
No 202
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.06 E-value=8.4e-06 Score=62.36 Aligned_cols=89 Identities=20% Similarity=0.307 Sum_probs=56.0
Q ss_pred eEEEEc-ccHhHHHHHHHHHHCC-Ce-EEEEeCCccchhhHHhC--------CCccCCCHHHHhhcCCeEEEEeCChhHH
Q 022909 73 RIGFLG-MGIMGTPMAQNLLKAG-CD-VTVWNRTKSKCDPLISL--------GAKYQPSPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 73 ~IgiiG-~G~iG~~la~~l~~~g-~~-V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~~aDivv~~~p~~~~~ 141 (290)
||+||| +|.+|+.+.+.|..+- ++ +.+++++.+....+... .....+...+.+.++|+|+.|+|... .
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA-S 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH-H
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH-H
Confidence 699999 9999999999999853 35 44666665333333331 11122222344589999999997633 3
Q ss_pred HHHhcccccccccCCCCCEEEEecCCC
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~ 168 (290)
.... -..+++|..+||.|...
T Consensus 80 ~~~~------~~~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 80 KELA------PKLLKAGIKVIDLSGDF 100 (121)
T ss_dssp HHHH------HHHHHTTSEEEESSSTT
T ss_pred HHHH------HHHhhCCcEEEeCCHHH
Confidence 4433 12257888999997543
No 203
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.06 E-value=9.4e-06 Score=70.10 Aligned_cols=93 Identities=16% Similarity=0.073 Sum_probs=73.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
++.+.|.|+|.+|+.-|+.|+.+|.+|++...+|-.+-+++-.|.+.+ .++|+.++.||++.++-- +.++ ..+
T Consensus 214 GKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~-tm~ea~~e~difVTtTGc----~dii--~~~ 286 (434)
T KOG1370|consen 214 GKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT-TLEEAIREVDIFVTTTGC----KDII--TGE 286 (434)
T ss_pred ccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee-eHHHhhhcCCEEEEccCC----cchh--hHH
Confidence 778888899999999999999999999999888754443333667655 899999999999877643 3444 345
Q ss_pred ccccCCCCCEEEEecCCChh
Q 022909 151 AASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~~~~ 170 (290)
-++.||.++++.|++.....
T Consensus 287 H~~~mk~d~IvCN~Ghfd~E 306 (434)
T KOG1370|consen 287 HFDQMKNDAIVCNIGHFDTE 306 (434)
T ss_pred HHHhCcCCcEEeccccccce
Confidence 68899999999999765543
No 204
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.05 E-value=2.3e-05 Score=56.08 Aligned_cols=63 Identities=21% Similarity=0.336 Sum_probs=50.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++++|+|+|.+|+.++..+... +.+|.+||| |+++.+++.+....+-
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~~----- 71 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLEE----- 71 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchHH-----
Confidence 68999999999999999999998 578999988 9999998765443321
Q ss_pred cccccCCCCCEEEEec
Q 022909 150 GAASGMGPGKGYVDVS 165 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s 165 (290)
....++++.++++++
T Consensus 72 -~~~~~~~~~~v~~~a 86 (86)
T cd05191 72 -ATAKINEGAVVIDLA 86 (86)
T ss_pred -HHHhcCCCCEEEecC
Confidence 235567888988763
No 205
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=98.05 E-value=3e-05 Score=78.59 Aligned_cols=110 Identities=18% Similarity=0.219 Sum_probs=77.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC-CCe-------------EEEEeCCccchhhHHh-C-CC---cc-CCCHHHHh---hc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA-GCD-------------VTVWNRTKSKCDPLIS-L-GA---KY-QPSPDEVA---AS 127 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~-g~~-------------V~~~d~~~~~~~~~~~-~-g~---~~-~~~~~~~~---~~ 127 (290)
+++|+|||+|.||+.+++.|... +.+ |.+.|+++++.+.+.+ . ++ .. +.+.+++. ++
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~ 648 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQ 648 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcC
Confidence 57999999999999999999864 333 8899999887776655 2 32 22 44655555 57
Q ss_pred CCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 128 aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+|+|++++|..-+ ..+. ..+++.|..+++.+ -......++.+..++.++.++.
T Consensus 649 ~DaVIsalP~~~H-~~VA------kaAieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 649 VDVVISLLPASCH-AVVA------KACIELKKHLVTAS-YVSEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred CCEEEECCCchhh-HHHH------HHHHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEE
Confidence 9999999997543 2222 34456777777775 4455566777777777766544
No 206
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.03 E-value=1.5e-05 Score=72.73 Aligned_cols=68 Identities=29% Similarity=0.397 Sum_probs=57.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHh-CCC--ccCCCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS-LGA--KYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~-~g~--~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
++++.|||+|.||.-+|+.|...| .+|++.+|+.+++..+++ .+. ...+++.+.+.++|+||.++..+
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~ 249 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAP 249 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCC
Confidence 789999999999999999999999 589999999999888776 443 33456777889999999996543
No 207
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.03 E-value=3.4e-05 Score=68.70 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=49.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC--CeEEEEeCCccchhhHHhC--------CC--c-cCCCHHHHhhcCCeEEEEeCCh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISL--------GA--K-YQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g--~~V~~~d~~~~~~~~~~~~--------g~--~-~~~~~~~~~~~aDivv~~~p~~ 138 (290)
+||+|||+|.+|+.+|..|...| .+|.++|+++++.+..... +. . ...+.+ .+++||+||++...+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~-~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYS-DCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHH-HhCCCCEEEEccCCC
Confidence 47999999999999999999988 5899999998775543321 11 1 223444 578999999998753
No 208
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.02 E-value=2.3e-05 Score=72.90 Aligned_cols=111 Identities=19% Similarity=0.312 Sum_probs=72.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC--------C--CeE-EEEeCCccchhhHHhCCCccCCCHHHHhhc--CCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA--------G--CDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~--------g--~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivv~~~p~ 137 (290)
..+|||+|+|.||+.+++.+... | .+| .++++++++.......+...+++.++++.+ .|+|+.+++.
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~ 82 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGG 82 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCC
Confidence 47899999999999999887543 2 343 467888765433222334566789999964 6999998865
Q ss_pred hhHHHHHhcccccccccCCCCCEEEEecCC-ChhHHHHHHHHHHHcCCcEE
Q 022909 138 PESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~lin~s~~-~~~~~~~l~~~l~~~~~~~~ 187 (290)
.......+ ...++.|..+|-..-. .....++|.+..+++++.+.
T Consensus 83 ~~~~~~~~------~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~ 127 (426)
T PRK06349 83 IEPARELI------LKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLY 127 (426)
T ss_pred chHHHHHH------HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEE
Confidence 43333333 4567788887743211 12234677777777777543
No 209
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.99 E-value=1.2e-05 Score=75.78 Aligned_cols=94 Identities=20% Similarity=0.316 Sum_probs=69.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC--C-----------------CH--------HH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--P-----------------SP--------DE 123 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~-----------------~~--------~~ 123 (290)
+.+|.|+|+|.+|...++.++..|.+|+++|+++++.+..++.|.... + +. .+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~ 244 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAE 244 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHh
Confidence 689999999999999999999999999999999998888777776521 1 10 11
Q ss_pred HhhcCCeEEEEeCChhH-HHHHhcccccccccCCCCCEEEEecC
Q 022909 124 VAASCDVTFAMLADPES-AMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 124 ~~~~aDivv~~~p~~~~-~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.++++|+||.+...+.. ...++ .++.++.|++|.++++++-
T Consensus 245 ~~~gaDVVIetag~pg~~aP~li--t~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 245 QAKEVDIIITTALIPGKPAPKLI--TAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred ccCCCCEEEECCCCCcccCcchH--HHHHHHhcCCCCEEEEEcc
Confidence 12469999999864321 11222 1344688999999999974
No 210
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.96 E-value=9.1e-05 Score=72.98 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=94.4
Q ss_pred EEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCCCccc--------cCC
Q 022909 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPA--------EDG 201 (290)
Q Consensus 131 vv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~--------~~~ 201 (290)
||+|+|. ..+..++ +++.+.+++++++.|+++.+....+++.+.+......|++ ||++|.+... ..+
T Consensus 1 vila~Pv-~~~~~~~---~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~ 76 (673)
T PRK11861 1 VLLAAPV-AQTGPLL---ARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVG 76 (673)
T ss_pred CEEEcCH-HHHHHHH---HHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCC
Confidence 5788876 6677777 5567889999999999999987766666665543356888 9999988654 366
Q ss_pred ceEEEecC---CHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHHHHHHHH
Q 022909 202 QLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRSCTFSYS 257 (290)
Q Consensus 202 ~~~~~~~~---~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~~~~~ea 257 (290)
...+++.. ++++++.++++++.+|.+++.+.+..+...+.+++.+-+.+..++.+.
T Consensus 77 ~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~ 135 (673)
T PRK11861 77 RNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQ 135 (673)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66777643 467899999999999999999999999999988888765555444433
No 211
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.96 E-value=3.8e-05 Score=61.43 Aligned_cols=76 Identities=25% Similarity=0.400 Sum_probs=54.4
Q ss_pred CCeEEEEccc-HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G-~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||-+ .+|+.++..|...|..|++++.+. .++++.++++|+||.+++.+.. + .
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~----i--~- 94 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNL----I--K- 94 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT-----B----
T ss_pred CCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeeccccc----c--c-
Confidence 8999999976 599999999999999999887653 3677889999999999977443 3 1
Q ss_pred cccccCCCCCEEEEecCCCh
Q 022909 150 GAASGMGPGKGYVDVSTVDG 169 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~~ 169 (290)
.+++|+|+++||++....
T Consensus 95 --~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 95 --ADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp --GGGS-TTEEEEE--CEEE
T ss_pred --cccccCCcEEEecCCccc
Confidence 457899999999965433
No 212
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.96 E-value=6.4e-05 Score=58.83 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=62.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|+| ...+|+.++..|.+.|..|..++++. .++++.++++|+|+.+++.+. ++ +
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~~----~i--~- 86 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKPE----KV--P- 86 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCCC----cc--C-
Confidence 89999999 58899999999999999999988643 267788999999999998753 34 2
Q ss_pred cccccCCCCCEEEEecCCC
Q 022909 150 GAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~ 168 (290)
.+++|+|++++|++...
T Consensus 87 --~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 87 --TEWIKPGATVINCSPTK 103 (140)
T ss_pred --HHHcCCCCEEEEcCCCc
Confidence 46789999999987544
No 213
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.93 E-value=5.1e-05 Score=64.50 Aligned_cols=108 Identities=18% Similarity=0.204 Sum_probs=73.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC---eEEEEeCC----ccch-------hhHHh-CCCccC-CCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC---DVTVWNRT----KSKC-------DPLIS-LGAKYQ-PSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~---~V~~~d~~----~~~~-------~~~~~-~g~~~~-~~~~~~~~~aDivv~~ 134 (290)
+++|.|+|+|.+|+.++..|...|. +|.++||+ .++. ..+.+ .+.... .++.+.++++|+||-+
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIga 104 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGV 104 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeC
Confidence 7899999999999999999999997 49999998 4432 22222 211111 3677788899999999
Q ss_pred eCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCc-EEe
Q 022909 135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS-FLE 188 (290)
Q Consensus 135 ~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~-~~~ 188 (290)
+|.. ++ .++.++.|.++.++.+.++ |.. +.+.+...+.+.. +.+
T Consensus 105 T~~G-----~~--~~~~l~~m~~~~ivf~lsn--P~~-e~~~~~A~~~ga~i~a~ 149 (226)
T cd05311 105 SRPG-----VV--KKEMIKKMAKDPIVFALAN--PVP-EIWPEEAKEAGADIVAT 149 (226)
T ss_pred CCCC-----CC--CHHHHHhhCCCCEEEEeCC--CCC-cCCHHHHHHcCCcEEEe
Confidence 8732 22 2334566778888888873 322 3455555666765 444
No 214
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.93 E-value=2.1e-05 Score=72.37 Aligned_cols=107 Identities=27% Similarity=0.332 Sum_probs=68.2
Q ss_pred EEEEcccHhHHHHHHHHHHCC-C-eEEEEeCCccchhhHHhC----CC-------ccCCCHHHHhhcCCeEEEEeCChhH
Q 022909 74 IGFLGMGIMGTPMAQNLLKAG-C-DVTVWNRTKSKCDPLISL----GA-------KYQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 74 IgiiG~G~iG~~la~~l~~~g-~-~V~~~d~~~~~~~~~~~~----g~-------~~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
|+|+|+|.+|+.+++.|...+ + +|++.||+.++.+.+.+. .+ .-..++.++++++|+||.|+|.. .
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence 789999999999999999876 4 899999999887776541 11 11123667889999999999764 3
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
...++ ...++.|...||++- ......++.+..++.++.++.
T Consensus 80 ~~~v~------~~~i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~ 120 (386)
T PF03435_consen 80 GEPVA------RACIEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALP 120 (386)
T ss_dssp HHHHH------HHHHHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-
T ss_pred hHHHH------HHHHHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEe
Confidence 33333 234556777787422 233445556666666665544
No 215
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.93 E-value=0.00011 Score=66.14 Aligned_cols=169 Identities=15% Similarity=0.207 Sum_probs=94.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHH--------CC--CeEE-EEeCCccc-------hhhHHh----CC-Cc-c-------CC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK--------AG--CDVT-VWNRTKSK-------CDPLIS----LG-AK-Y-------QP 119 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~--------~g--~~V~-~~d~~~~~-------~~~~~~----~g-~~-~-------~~ 119 (290)
..+|+|+|+|++|+.+++.+.. .| .+|. +.|++... .+++.+ .+ +. + ..
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 4789999999999999999876 46 3443 44544211 111111 11 00 0 11
Q ss_pred CHHHHh--hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCCh-hHHHHHHHHHHHcCCcEEeC-ccCCCC
Q 022909 120 SPDEVA--ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFLEA-PVSGSK 195 (290)
Q Consensus 120 ~~~~~~--~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~-~~~~~l~~~l~~~~~~~~~~-p~~~~~ 195 (290)
+.++++ .++|+||-+.+. ....... ...++.|..+|-.+.+.. ...+++.+..++++..+.-. .+.++.
T Consensus 82 ~~~ell~~~~~DVvVd~t~~-~~a~~~~------~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~Gi 154 (336)
T PRK08374 82 SPEEIVEEIDADIVVDVTND-KNAHEWH------LEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGT 154 (336)
T ss_pred CHHHHHhcCCCCEEEECCCc-HHHHHHH------HHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccC
Confidence 677777 478999988854 4444444 455678888775544322 24456777767777776653 333333
Q ss_pred ccccCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCC
Q 022909 196 KPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFL 267 (290)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~ 267 (290)
| .++.+++.+ .|.++..+..+-++-.--++..+ . . ..+.|++..|++.|..
T Consensus 155 P----------------ii~~l~~~l--~g~~i~~i~GIlnGT~nyIl~~m-~--~g~~f~eal~eAq~~Gya 206 (336)
T PRK08374 155 P----------------IIGLLRENL--LGDTVKRIEAVVNATTTFILTRM-E--QGKTFEEALKEAQTLGIA 206 (336)
T ss_pred C----------------chHHHHhhc--cccceEEEEEEEechHHHHHHHh-h--CCCCHHHHHHHHHHcCCC
Confidence 2 234555555 35556555554333321111111 1 2 5677888777887753
No 216
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.92 E-value=1.7e-05 Score=73.30 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=57.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh-CC-C--ccCCCHHHHhhcCCeEEEEeCChhH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS-LG-A--KYQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~-~g-~--~~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
+++|.|||+|.||+.+++.|...|. +|++++|+.++.+.+.+ .+ . ...+++.+.+.++|+||.|++.+..
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEY 255 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCe
Confidence 7899999999999999999999995 79999999888777766 22 2 2234566778999999999976543
No 217
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.92 E-value=7.1e-05 Score=63.62 Aligned_cols=107 Identities=20% Similarity=0.251 Sum_probs=68.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEE-EEeC----------CccchhhHHh-CC-------CccCCCHHHHh-hcCCe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNR----------TKSKCDPLIS-LG-------AKYQPSPDEVA-ASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~-~~d~----------~~~~~~~~~~-~g-------~~~~~~~~~~~-~~aDi 130 (290)
+++|+|.|+|++|+.+++.|..+|.+|+ +.|. +.+...+..+ .| .... +.++++ .++|+
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~Dv 109 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDCDI 109 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecccE
Confidence 7999999999999999999999999988 6565 3333322222 22 1111 223333 36899
Q ss_pred EEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 131 vv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++-|.+.+.-+.+.+ +.++ =.+|+--++... + .+..+.|+++|+.|+.
T Consensus 110 lip~a~~~~i~~~~~-------~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~~~P 157 (227)
T cd01076 110 LIPAALENQITADNA-------DRIK-AKIIVEAANGPT-T-PEADEILHERGVLVVP 157 (227)
T ss_pred EEecCccCccCHHHH-------hhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCEEEC
Confidence 998886655544433 3343 234444444444 4 5667888999988864
No 218
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.91 E-value=8.9e-05 Score=62.56 Aligned_cols=108 Identities=12% Similarity=0.119 Sum_probs=67.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCc----------cchhhHHhC-CCccCC-----CHHHHh-hcCCeEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTK----------SKCDPLISL-GAKYQP-----SPDEVA-ASCDVTF 132 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~----------~~~~~~~~~-g~~~~~-----~~~~~~-~~aDivv 132 (290)
+++|.|.|+|++|+.+|+.|...|.+ |.+.|.+. +..+...+. ++...+ +.++++ .++|+++
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVli 102 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFA 102 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccEEe
Confidence 79999999999999999999999885 55778776 444333332 222111 123333 3689999
Q ss_pred EEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 133 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.|.+.+.-+.. ....++ =.+++-.++++.. . +-.+.|+++|+.++.
T Consensus 103 paA~~~~i~~~-------~a~~l~-a~~V~e~AN~p~t-~-~a~~~L~~~Gi~v~P 148 (217)
T cd05211 103 PCALGNVIDLE-------NAKKLK-AKVVAEGANNPTT-D-EALRILHERGIVVAP 148 (217)
T ss_pred eccccCccChh-------hHhhcC-ccEEEeCCCCCCC-H-HHHHHHHHCCcEEEC
Confidence 88876533333 233343 2344444444443 3 567788888877754
No 219
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=97.91 E-value=1.6e-05 Score=60.83 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=48.8
Q ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHhhcCCCCccccCC
Q 022909 235 GNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFLINTVTMFLQSFSFGNLQYDGN 288 (290)
Q Consensus 235 g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~~~~~~~~i~~~~~gs~~~~~~ 288 (290)
|.+..+|++.|++...+ .+++|++.++++.|+|++++.+++....++|+.+.++
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~ 55 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNR 55 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhh
Confidence 67899999999998888 9999999999999999999999999999999877543
No 220
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.91 E-value=3e-05 Score=72.13 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=50.0
Q ss_pred CeEEEEcccHhHHHHHH--HH----HHCCCeEEEEeCCccchhhHHh--------C----CCccCCCHHHHhhcCCeEEE
Q 022909 72 GRIGFLGMGIMGTPMAQ--NL----LKAGCDVTVWNRTKSKCDPLIS--------L----GAKYQPSPDEVAASCDVTFA 133 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~--~l----~~~g~~V~~~d~~~~~~~~~~~--------~----g~~~~~~~~~~~~~aDivv~ 133 (290)
+||+|||.|.+|.+.+. .+ ...|.+|.+||+++++.+.... . .+..++++.+++++||+|++
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 47999999999998655 23 3346799999999877554332 1 23346788899999999999
Q ss_pred EeCC
Q 022909 134 MLAD 137 (290)
Q Consensus 134 ~~p~ 137 (290)
++|.
T Consensus 81 ai~~ 84 (423)
T cd05297 81 TIQV 84 (423)
T ss_pred eeEe
Confidence 9983
No 221
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.91 E-value=5.1e-05 Score=66.57 Aligned_cols=74 Identities=24% Similarity=0.335 Sum_probs=59.9
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||.|. +|+.++..|...|..|+++++.. .++.+.++++|+||.+++.+. .+ .
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~----~v--~- 217 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPE----LI--K- 217 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCC----cC--C-
Confidence 89999999998 99999999999999999998732 245667789999999997533 33 1
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.+.++++++++|++..
T Consensus 218 --~~~lk~gavViDvg~n 233 (283)
T PRK14192 218 --KDWIKQGAVVVDAGFH 233 (283)
T ss_pred --HHHcCCCCEEEEEEEe
Confidence 3558999999999643
No 222
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.90 E-value=5.4e-05 Score=67.26 Aligned_cols=62 Identities=21% Similarity=0.213 Sum_probs=45.4
Q ss_pred EEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhh----HHh----C----CCccCCCHHHHhhcCCeEEEEeC
Q 022909 74 IGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDP----LIS----L----GAKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 74 IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~----~~~----~----g~~~~~~~~~~~~~aDivv~~~p 136 (290)
|+|||+|.||..+|..++..|. +|.++|++++..+. +.+ . .+....+.+ .+++||+||++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecC
Confidence 6899999999999999988776 99999998765321 111 0 122234554 5799999999874
No 223
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.90 E-value=6e-05 Score=65.72 Aligned_cols=73 Identities=26% Similarity=0.361 Sum_probs=61.1
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||-|. +|+.++..|...|..|+++.+.. .++.+.++++|+||.+++.+.- + .
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvi~avG~p~~----v--~- 217 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--------------KNLRHHVRNADLLVVAVGKPGF----I--P- 217 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--------------CCHHHHHhhCCEEEEcCCCccc----c--c-
Confidence 89999999988 99999999999999999987542 3678889999999999976542 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.+++++|+++||++.
T Consensus 218 --~~~vk~gavVIDvGi 232 (285)
T PRK10792 218 --GEWIKPGAIVIDVGI 232 (285)
T ss_pred --HHHcCCCcEEEEccc
Confidence 256899999999973
No 224
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.88 E-value=1.9e-05 Score=62.15 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=48.3
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHh--------C--CCccCCCHHHHhhcCCeEEEEeC
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS--------L--GAKYQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~--------~--g~~~~~~~~~~~~~aDivv~~~p 136 (290)
+||+|||+ |++|..++..|...+. ++.++|+++++.+.... . ......+..+.+++||+|+++.-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 68999999 9999999999988764 89999999765433221 1 11222355667899999999874
No 225
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.88 E-value=4e-05 Score=58.14 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=65.0
Q ss_pred cccHhHHHHHHHHHHC----CCeEE-EEeCC--ccchhhHHhCCCccCCCHHHHhh--cCCeEEEEeCChhHHHHHhccc
Q 022909 78 GMGIMGTPMAQNLLKA----GCDVT-VWNRT--KSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 78 G~G~iG~~la~~l~~~----g~~V~-~~d~~--~~~~~~~~~~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~~~~~ 148 (290)
|+|.||+.+++.+... +++|. +++++ ..........+.....++++++. +.|+||-|.+. +.....+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~-~~~~~~~--- 76 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSS-EAVAEYY--- 76 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSC-HHHHHHH---
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCc-hHHHHHH---
Confidence 8999999999999876 45654 67777 11111111233556779999998 89999999655 4444444
Q ss_pred ccccccCCCCCEEEEecCCChh---HHHHHHHHHHHcCCcEE
Q 022909 149 HGAASGMGPGKGYVDVSTVDGD---TSKLINGHIKATGASFL 187 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~~~~~---~~~~l~~~l~~~~~~~~ 187 (290)
.+.++.|..+|..+-+... ..++|.+..++.+.++.
T Consensus 77 ---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 77 ---EKALERGKHVVTANKGALADEALYEELREAARKNGVRIY 115 (117)
T ss_dssp ---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred ---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence 4567788888877655444 45567777777776653
No 226
>PRK10206 putative oxidoreductase; Provisional
Probab=97.86 E-value=0.00013 Score=66.08 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=69.5
Q ss_pred CeEEEEcccHhHH-HHHHHHHH--CCCeEE-EEeCCccchhhHHhCC-CccCCCHHHHhh--cCCeEEEEeCChhHHHHH
Q 022909 72 GRIGFLGMGIMGT-PMAQNLLK--AGCDVT-VWNRTKSKCDPLISLG-AKYQPSPDEVAA--SCDVTFAMLADPESAMDV 144 (290)
Q Consensus 72 ~~IgiiG~G~iG~-~la~~l~~--~g~~V~-~~d~~~~~~~~~~~~g-~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~ 144 (290)
.||||||+|.++. ..+..+.. .+.+|. ++|+++++.+...+.+ +..+++++++++ +.|+|++++|...+.+..
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~ 81 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA 81 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHH
Confidence 5799999999875 34554533 256665 7899875543333343 567789999996 479999999976654443
Q ss_pred hcccccccccCCCCCEEE-Eec-CCChhHHHHHHHHHHHcCCcE
Q 022909 145 ACGKHGAASGMGPGKGYV-DVS-TVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~li-n~s-~~~~~~~~~l~~~l~~~~~~~ 186 (290)
. ..++.|+.++ .-= .....+.+++.+..++.++.+
T Consensus 82 ~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l 118 (344)
T PRK10206 82 K-------RALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTV 118 (344)
T ss_pred H-------HHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEE
Confidence 3 3345555433 211 234456677888877776654
No 227
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.85 E-value=6.2e-05 Score=65.57 Aligned_cols=93 Identities=15% Similarity=0.194 Sum_probs=61.0
Q ss_pred EEEEcc-cHhHHHHHHHHHHCC----CeEEEEeCCccchhhHHh-------C----CCccCCCHHHHhhcCCeEEEEeCC
Q 022909 74 IGFLGM-GIMGTPMAQNLLKAG----CDVTVWNRTKSKCDPLIS-------L----GAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 74 IgiiG~-G~iG~~la~~l~~~g----~~V~~~d~~~~~~~~~~~-------~----g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
|+|||+ |.+|..++..+...| .+|.++|+++++.+.... . .+...+++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 689999 999999999999888 689999998876543221 1 223345667889999999995421
Q ss_pred h-----------hHHHHHhcccccccccCCCCCEEEEecC
Q 022909 138 P-----------ESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 138 ~-----------~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
+ .....++..-.+.+....|++++|+.|.
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tN 120 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 1 0111122100112334458889999854
No 228
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.84 E-value=9e-05 Score=65.22 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=73.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC-C----CccCC---CHHHHhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-G----AKYQP---SPDEVAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~-g----~~~~~---~~~~~~~~aDivv~~~p~~~~~ 141 (290)
++++.|||+|.+|++++..|...|. +|++++|++++.+.+.+. + +.... ++.+.+.++|+||.++|.....
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~ 204 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPA 204 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCCCC
Confidence 6899999999999999999999997 799999999888777652 1 11121 2335567899999999864321
Q ss_pred HH-Hhcccccc--cccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 142 MD-VACGKHGA--ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 142 ~~-~~~~~~~~--~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.. .+...... ....+++.+++|+--.+.. -.+.+..++.|...++
T Consensus 205 ~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~~~ 252 (282)
T TIGR01809 205 DYVDLFATVPFLLLKRKSSEGIFLDAAYDPWP--TPLVAIVSAAGWRVIS 252 (282)
T ss_pred CHHHhhhhhhhhccccCCCCcEEEEEeeCCCC--CHHHHHHHHCCCEEEC
Confidence 11 11000000 0123456778887543322 2555666666655543
No 229
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.84 E-value=6.3e-05 Score=57.04 Aligned_cols=103 Identities=20% Similarity=0.313 Sum_probs=69.1
Q ss_pred CeEEEEc----ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 72 GRIGFLG----MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 72 ~~IgiiG----~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
++|+||| -++.|..+.+.|.+.|++|+..++..+.. .|...+.+++|.-...|++++++|. +.+..++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v-- 72 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIV-- 72 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHH--
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCH-HHHHHHH--
Confidence 5799999 68999999999999999999998876443 3566677888844789999999975 5566666
Q ss_pred cccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++. ..+..+.+++..+ ...+++.+.+++.++++++
T Consensus 73 -~~~-~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 73 -DEA-AALGVKAVWLQPG----AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp -HHH-HHHT-SEEEE-TT----S--HHHHHHHHHTT-EEEE
T ss_pred -HHH-HHcCCCEEEEEcc----hHHHHHHHHHHHcCCEEEe
Confidence 222 2234555666443 5667888888889998885
No 230
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.83 E-value=0.00013 Score=65.28 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=49.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHh---C------CCcc-CCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS---L------GAKY-QPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~---~------g~~~-~~~~~~~~~~aDivv~~~p~ 137 (290)
++||+|||+|.+|..+|-.+...|. ++.++|++.++.+.... . .... ..+. +.+++||+||++.-.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag~ 83 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAGA 83 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence 6899999999999999999998887 89999998776433221 0 1111 2334 457999999997653
No 231
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.82 E-value=0.00034 Score=65.12 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=47.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
.++|.|||.|.+|.++|+.|...|++|.++|+++..........-....+.+...+++|+||.+.+.+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence 47899999999999999999999999999998765432211000011223334457789888776544
No 232
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.80 E-value=7e-05 Score=62.43 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=31.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 103 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~ 103 (290)
..+|+|+|+|.+|..+|..|+..|. +++++|++
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 6899999999999999999999998 69999987
No 233
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.80 E-value=1.8e-05 Score=68.74 Aligned_cols=93 Identities=25% Similarity=0.400 Sum_probs=71.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCc------cCCCHHHHhhcCCeEEEEeCCh-hHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAK------YQPSPDEVAASCDVTFAMLADP-ESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~------~~~~~~~~~~~aDivv~~~p~~-~~~~ 142 (290)
.-+|.|||.|-+|..-|+.+...|.+|++.|+|.++...+.. .+.+ ...++++.+.++|+||-++--+ ....
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaP 247 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAP 247 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCc
Confidence 578999999999999999999999999999999988777665 2221 1235788899999998776322 2223
Q ss_pred HHhcccccccccCCCCCEEEEec
Q 022909 143 DVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s 165 (290)
.++ .++..++||||.++||++
T Consensus 248 kLv--t~e~vk~MkpGsVivDVA 268 (371)
T COG0686 248 KLV--TREMVKQMKPGSVIVDVA 268 (371)
T ss_pred eeh--hHHHHHhcCCCcEEEEEE
Confidence 333 355678999999999996
No 234
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.80 E-value=0.00012 Score=64.21 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=63.0
Q ss_pred CeEEEEcccHhHHHHHHHHHH-CCCeEE-EEeCCccch--hhHHhCCCcc-CCCHHHHhh--cCCeEEEEeCChhHHHHH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLK-AGCDVT-VWNRTKSKC--DPLISLGAKY-QPSPDEVAA--SCDVTFAMLADPESAMDV 144 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~-~g~~V~-~~d~~~~~~--~~~~~~g~~~-~~~~~~~~~--~aDivv~~~p~~~~~~~~ 144 (290)
.+|||||+|+||+.++..+.. .+.++. ++|+++++. ...++.|+.. .++.+++++ +.|+|++++|...+.+..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a 81 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA 81 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 589999999999998777764 356655 678887653 3334467653 457888886 478899999876554443
Q ss_pred hcccccccccCCCCCEEEEecCCC
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~~ 168 (290)
. ..++.|+.+|+.+...
T Consensus 82 ~-------~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 82 R-------LLAELGKIVIDLTPAA 98 (285)
T ss_pred H-------HHHHcCCEEEECCccc
Confidence 2 3456788887776433
No 235
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.79 E-value=8.2e-05 Score=67.20 Aligned_cols=67 Identities=12% Similarity=0.196 Sum_probs=47.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHh-------------------CCCccCCCHHHHhhcCCe
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCDV 130 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aDi 130 (290)
.||||+|+|+||+.+++.+... ++++. +++++++....+.+ .++....+.++++.++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 6899999999999999998764 57765 55655433332222 123344567888888999
Q ss_pred EEEEeCCh
Q 022909 131 TFAMLADP 138 (290)
Q Consensus 131 vv~~~p~~ 138 (290)
|+.++|..
T Consensus 82 VIdaT~~~ 89 (341)
T PRK04207 82 VVDATPGG 89 (341)
T ss_pred EEECCCch
Confidence 99998764
No 236
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.79 E-value=0.0001 Score=64.33 Aligned_cols=73 Identities=25% Similarity=0.349 Sum_probs=59.6
Q ss_pred CCeEEEEccc-HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G-~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||-| .+|+.+|..|...|..|+++.... .++.+.+++||+||.+++.+.- + .
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~----i--~- 215 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDL----I--K- 215 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCc----C--C-
Confidence 8999999998 999999999999999999885422 2456789999999999977442 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.+++++|+++||++.
T Consensus 216 --~~~vk~GavVIDvGi 230 (285)
T PRK14191 216 --ASMVKKGAVVVDIGI 230 (285)
T ss_pred --HHHcCCCcEEEEeec
Confidence 345799999999974
No 237
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.79 E-value=0.00011 Score=64.14 Aligned_cols=73 Identities=21% Similarity=0.218 Sum_probs=60.6
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||-+. +|+.++..|...|..|++++... .++.+..+++|+||.++..+. ++ .
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~p~----~i--~- 222 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGVKH----LI--K- 222 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCCcc----cc--C-
Confidence 89999999988 99999999999999999888432 357788899999999987653 33 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.+++++|+++||++.
T Consensus 223 --~~~vk~gavVIDvGi 237 (287)
T PRK14176 223 --ADMVKEGAVIFDVGI 237 (287)
T ss_pred --HHHcCCCcEEEEecc
Confidence 346899999999975
No 238
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.78 E-value=0.00011 Score=60.21 Aligned_cols=87 Identities=13% Similarity=0.215 Sum_probs=62.0
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh---CCCccC--CC----HHHHhhcCCeEEEEeCChhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS---LGAKYQ--PS----PDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~---~g~~~~--~~----~~~~~~~aDivv~~~p~~~~ 140 (290)
+++|.|||- ..+|+.++..|...|..|+++|.+.-.. +.. ..-..+ .+ +.+.+++|||||.+++.+.-
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~ 139 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNY 139 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEccCCCCC
Confidence 899999995 6789999999999999999997543111 000 000011 12 67889999999999988543
Q ss_pred HHHHhcccccccccCCCCCEEEEecCC
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
. + . .+++|+|+++||++..
T Consensus 140 ~---i--~---~d~ik~GavVIDVGi~ 158 (197)
T cd01079 140 K---V--P---TELLKDGAICINFASI 158 (197)
T ss_pred c---c--C---HHHcCCCcEEEEcCCC
Confidence 0 2 1 3567899999999754
No 239
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.78 E-value=0.00022 Score=68.86 Aligned_cols=75 Identities=17% Similarity=0.300 Sum_probs=58.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC---CCHHHH-----hhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ---PSPDEV-----AASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~~~~~~-----~~~aDivv~~~p~~~~~~ 142 (290)
..+|.|+|+|++|+.+++.|.+.|++|.+.|+++++.+++++.|.... .+.++. ++++|.++++++.+.+..
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~ 496 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAG 496 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHH
Confidence 467999999999999999999999999999999998888887654321 112223 357899999998866655
Q ss_pred HHh
Q 022909 143 DVA 145 (290)
Q Consensus 143 ~~~ 145 (290)
.++
T Consensus 497 ~iv 499 (558)
T PRK10669 497 EIV 499 (558)
T ss_pred HHH
Confidence 554
No 240
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.78 E-value=9.6e-05 Score=66.88 Aligned_cols=92 Identities=25% Similarity=0.310 Sum_probs=57.9
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHC-CCeEEE-EeCCccchhhHHh-CC-Cc-----cCCCHHH-HhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKA-GCDVTV-WNRTKSKCDPLIS-LG-AK-----YQPSPDE-VAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~-g~~V~~-~d~~~~~~~~~~~-~g-~~-----~~~~~~~-~~~~aDivv~~~p~~~ 139 (290)
++||+|||+ |.+|+.+++.|..+ ++++.. +++. +..+.+.+ .+ +. .+.++++ ..+++|+|++|+|...
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~ 80 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV 80 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH
Confidence 489999996 99999999999876 567654 5533 22222221 11 11 1223332 4567999999998754
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChh
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~ 170 (290)
. .++. ...++.|..+||.|..--.
T Consensus 81 ~-~~~v------~~a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 81 S-MDLA------PQLLEAGVKVIDLSADFRL 104 (343)
T ss_pred H-HHHH------HHHHhCCCEEEECCcccCC
Confidence 3 3333 2234578999999855444
No 241
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.77 E-value=0.00033 Score=61.97 Aligned_cols=113 Identities=17% Similarity=0.179 Sum_probs=79.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC---CCeEE-EEeCCccchhhHHh-CCC---ccCCCHHHHhhcC--CeEEEEeCChhH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA---GCDVT-VWNRTKSKCDPLIS-LGA---KYQPSPDEVAASC--DVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~---g~~V~-~~d~~~~~~~~~~~-~g~---~~~~~~~~~~~~a--Divv~~~p~~~~ 140 (290)
.-|+||+|+|.|++-.++.+... ++.|. +++|+.+++..+++ .++ +...+.++++++. |+|.+..|.+++
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH 85 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQH 85 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccH
Confidence 57899999999999999998653 56654 77898888877776 333 5678999999875 999999988776
Q ss_pred HHHHhcccccccccCCCCCEEEEec-CCChhHHHHHHHHHHHcCCcEEeC
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVS-TVDGDTSKLINGHIKATGASFLEA 189 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s-~~~~~~~~~l~~~l~~~~~~~~~~ 189 (290)
.+-+.. ...+...+++.-- .......+.+.++.+.+++.+.+.
T Consensus 86 ~evv~l------~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 86 YEVVML------ALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred HHHHHH------HHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 554431 1111222443321 234556778999999998777653
No 242
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.77 E-value=5e-05 Score=64.55 Aligned_cols=67 Identities=19% Similarity=0.381 Sum_probs=50.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh--CCCcc----CCC---HHHH-hhcCCeEEEEeCCh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--LGAKY----QPS---PDEV-AASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~--~g~~~----~~~---~~~~-~~~aDivv~~~p~~ 138 (290)
|++.|||+|++|..+|+.|...|++|.+.++++++.++... .+... .++ +.++ +.++|+++.++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 68999999999999999999999999999999988777333 32221 112 3333 45689999988653
No 243
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.77 E-value=0.00016 Score=63.85 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=72.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCc---cchhhHHh----CC----CccC--C---CHHHHhhcCCeEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTK---SKCDPLIS----LG----AKYQ--P---SPDEVAASCDVTFA 133 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~---~~~~~~~~----~g----~~~~--~---~~~~~~~~aDivv~ 133 (290)
++++.|+|+|.+|++++..|...|.+ |.+++|++ ++.+.+.+ .+ +... + ++++.++.+|+||.
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilIN 205 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVN 205 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEE
Confidence 68899999999999999999999986 99999986 44444332 11 1111 1 22345567899999
Q ss_pred EeCChhH--HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 134 MLADPES--AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 134 ~~p~~~~--~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++|.... ...... .....+.++.+++|+.-.+.. -.+.++.++.|.+.++
T Consensus 206 aTp~Gm~~~~~~~~~---~~~~~l~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~~~ 257 (289)
T PRK12548 206 ATLVGMKPNDGETNI---KDTSVFRKDLVVADTVYNPKK--TKLLEDAEAAGCKTVG 257 (289)
T ss_pred eCCCCCCCCCCCCCC---CcHHhcCCCCEEEEecCCCCC--CHHHHHHHHCCCeeeC
Confidence 9985421 111100 012346778888888654433 2566666777666554
No 244
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.75 E-value=0.00021 Score=63.74 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=60.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHh----C-------CCccCCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS----L-------GAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~----~-------g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
.+||+|||+|.+|..+|..+...|. ++.++|+++++.+.... . .+....+.++ +++||+||++.-.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~ 81 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGA 81 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCC
Confidence 4799999999999999999988775 79999998765432211 0 1222356665 7999999996542
Q ss_pred h---hHHH-HHhccccc-------ccccCCCCCEEEEecC
Q 022909 138 P---ESAM-DVACGKHG-------AASGMGPGKGYVDVST 166 (290)
Q Consensus 138 ~---~~~~-~~~~~~~~-------~~~~~~~~~~lin~s~ 166 (290)
+ ..++ .++..+.. .+....+++++|++|.
T Consensus 82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 1 1222 11111111 1223467888888863
No 245
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.71 E-value=0.00034 Score=52.75 Aligned_cols=85 Identities=22% Similarity=0.384 Sum_probs=58.6
Q ss_pred EEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC----CCHHHH----hhcCCeEEEEeCChhHHHHHh
Q 022909 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ----PSPDEV----AASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 74 IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~~~----~~~aDivv~~~p~~~~~~~~~ 145 (290)
|.|+|+|.+|+.+++.|.+.+.+|.+.+++++..+.+.+.+.... .+.+.+ ++++|.|+++.+.+.....+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~ 80 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA 80 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence 579999999999999999977799999999998888887664321 222222 357899999987765544443
Q ss_pred cccccccccCCCCCEEE
Q 022909 146 CGKHGAASGMGPGKGYV 162 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~li 162 (290)
.....+.+...++
T Consensus 81 ----~~~r~~~~~~~ii 93 (116)
T PF02254_consen 81 ----LLARELNPDIRII 93 (116)
T ss_dssp ----HHHHHHTTTSEEE
T ss_pred ----HHHHHHCCCCeEE
Confidence 1234444544444
No 246
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.69 E-value=0.00013 Score=64.99 Aligned_cols=66 Identities=18% Similarity=0.300 Sum_probs=49.4
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC--CeEEEEeCCccchhh-HHh-CCC--------ccCCCHHHHhhcCCeEEEEeCCh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDP-LIS-LGA--------KYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g--~~V~~~d~~~~~~~~-~~~-~g~--------~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
|||+|||+|.+|..+|..|...| .+|.++|+++++.+. ..+ ... ....+. +.+++||+|+++.+.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 47999999999999999999988 589999999876542 111 111 112344 4589999999999864
No 247
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.69 E-value=0.00014 Score=65.79 Aligned_cols=92 Identities=21% Similarity=0.295 Sum_probs=58.8
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHh-C----CC--ccCC--CHHHHhhcCCeEEEEeCChh
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-L----GA--KYQP--SPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~-~----g~--~~~~--~~~~~~~~aDivv~~~p~~~ 139 (290)
++|+|+|+ |.+|+.+++.|..+ ++++. +++++....+.+.+ . +. .... +.+++++++|+|++|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 47999997 99999999999976 56777 54654322222221 1 11 0111 4556666899999999874
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChh
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGD 170 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~ 170 (290)
....+. ....+.|..+||.|...-.
T Consensus 80 ~s~~~~------~~~~~~G~~VIDlS~~fR~ 104 (346)
T TIGR01850 80 VSAELA------PELLAAGVKVIDLSADFRL 104 (346)
T ss_pred HHHHHH------HHHHhCCCEEEeCChhhhc
Confidence 334443 1223568999999854433
No 248
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.68 E-value=0.00016 Score=65.43 Aligned_cols=115 Identities=19% Similarity=0.141 Sum_probs=68.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC----------CCeEE-EEeCCcc----------chhhHHh-CCC-c------cCCCH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA----------GCDVT-VWNRTKS----------KCDPLIS-LGA-K------YQPSP 121 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~----------g~~V~-~~d~~~~----------~~~~~~~-~g~-~------~~~~~ 121 (290)
..+|+|+|+|.||+.+++.+... +.+|. ++|++.. +...+.+ .+. . ...++
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 47899999999999999998754 35544 6675321 1111111 121 1 12478
Q ss_pred HHHhh--cCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCCh-hHHHHHHHHHHHcCCcEE
Q 022909 122 DEVAA--SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFL 187 (290)
Q Consensus 122 ~~~~~--~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~-~~~~~l~~~l~~~~~~~~ 187 (290)
++++. +.|+|+.++|...+..+.. .+-....++.|..+|-.+-... ...++|.+..++.+..+.
T Consensus 82 ~ell~~~~~DvVvd~T~s~~~~~~~a--~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~ 148 (341)
T PRK06270 82 LEVIRSVDADVVVEATPTNIETGEPA--LSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFR 148 (341)
T ss_pred HHHhhccCCCEEEECCcCcccccchH--HHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEE
Confidence 88885 5799999998644321110 0111455677888774432221 235677787777777654
No 249
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.67 E-value=0.00012 Score=65.42 Aligned_cols=66 Identities=15% Similarity=0.211 Sum_probs=47.1
Q ss_pred EEEEcccHhHHHHHHHHHHC-CCeEE-EEeCCccchhhHHh-C------------------CCccCCCHHHHhhcCCeEE
Q 022909 74 IGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-L------------------GAKYQPSPDEVAASCDVTF 132 (290)
Q Consensus 74 IgiiG~G~iG~~la~~l~~~-g~~V~-~~d~~~~~~~~~~~-~------------------g~~~~~~~~~~~~~aDivv 132 (290)
|||+|+|+||+.+++.+... +++|. +.|.+++....++. . ++....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 69999999999999998754 56765 55655553323322 1 2333457899999999999
Q ss_pred EEeCChh
Q 022909 133 AMLADPE 139 (290)
Q Consensus 133 ~~~p~~~ 139 (290)
.|+|...
T Consensus 81 e~Tp~~~ 87 (333)
T TIGR01546 81 DATPGGI 87 (333)
T ss_pred ECCCCCC
Confidence 9998653
No 250
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.66 E-value=0.00037 Score=67.78 Aligned_cols=109 Identities=16% Similarity=0.202 Sum_probs=73.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC---CCHHHH-----hhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ---PSPDEV-----AASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~~~~~~-----~~~aDivv~~~p~~~~~~ 142 (290)
..+|.|+|+|++|+.+++.|.+.|+++.+.|+++++.+.+++.|.... .+-++. ++++|.++++++.++...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 467999999999999999999999999999999999888877664321 122233 457899999998876665
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.+.. ....+.|+..+|-.++. . .-.+.+++.|...+-
T Consensus 480 ~i~~----~~r~~~p~~~IiaRa~~-~----~~~~~L~~~Ga~~vv 516 (601)
T PRK03659 480 KIVE----LCQQHFPHLHILARARG-R----VEAHELLQAGVTQFS 516 (601)
T ss_pred HHHH----HHHHHCCCCeEEEEeCC-H----HHHHHHHhCCCCEEE
Confidence 5541 23344555555433221 1 223345555665543
No 251
>PLN02602 lactate dehydrogenase
Probab=97.66 E-value=0.00037 Score=63.02 Aligned_cols=94 Identities=15% Similarity=0.192 Sum_probs=59.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHh--------CC-Ccc--CCCHHHHhhcCCeEEEEeCCh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS--------LG-AKY--QPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~--------~g-~~~--~~~~~~~~~~aDivv~~~p~~ 138 (290)
+||+|||+|++|..+|-.+...+. ++.++|+++++++..+. .+ ... ..+.++ +++||+||++.-.+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCCCCEEEECCCCC
Confidence 699999999999999999988775 79999998765432211 01 122 134444 89999999985432
Q ss_pred ---hHHH-HHhcccc-------cccccCCCCCEEEEecC
Q 022909 139 ---ESAM-DVACGKH-------GAASGMGPGKGYVDVST 166 (290)
Q Consensus 139 ---~~~~-~~~~~~~-------~~~~~~~~~~~lin~s~ 166 (290)
..++ .++..+. +.+....+++++|+++.
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 1122 2221111 11233457788888863
No 252
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.65 E-value=0.00018 Score=62.62 Aligned_cols=73 Identities=22% Similarity=0.294 Sum_probs=60.4
Q ss_pred CCeEEEEccc-HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G-~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|+|.+ ..|+.++..|...|..|+.+.++. .++.+.+++||+||.+++.+ +++ .
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~----~lv--~- 210 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKA----GFI--T- 210 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcc----ccc--C-
Confidence 8999999988 999999999999999999887543 25778899999999999764 334 2
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.+++++|+++||++.
T Consensus 211 --~~~vk~GavVIDVgi 225 (279)
T PRK14178 211 --PDMVKPGATVIDVGI 225 (279)
T ss_pred --HHHcCCCcEEEEeec
Confidence 234699999999974
No 253
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.62 E-value=0.00029 Score=61.62 Aligned_cols=111 Identities=23% Similarity=0.241 Sum_probs=77.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC----CC-ccCCCHHHH--hhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL----GA-KYQPSPDEV--AASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~----g~-~~~~~~~~~--~~~aDivv~~~p~~~~~~ 142 (290)
++++.|+|+|-.+++++..|+..|. +|++++|+.++.+++++. +. .......++ ..++|+||.++|....-.
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~ 205 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAGP 205 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCCCC
Confidence 6899999999999999999999995 799999999998887652 11 011122222 226999999999644322
Q ss_pred H---HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 143 D---VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 143 ~---~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
. .+ . .+.++++.++.|+--.+..+ .+.+..++.|...++
T Consensus 206 ~~~~~~----~-~~~l~~~~~v~D~vY~P~~T--plL~~A~~~G~~~id 247 (283)
T COG0169 206 EGDSPV----P-AELLPKGAIVYDVVYNPLET--PLLREARAQGAKTID 247 (283)
T ss_pred CCCCCC----c-HHhcCcCCEEEEeccCCCCC--HHHHHHHHcCCeEEC
Confidence 1 12 1 45678899999985544432 566667777766555
No 254
>PRK04148 hypothetical protein; Provisional
Probab=97.62 E-value=0.00042 Score=53.57 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=48.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc-----CCCHHHHhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-----QPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-----~~~~~~~~~~aDivv~~~p~~ 138 (290)
+++|.+||+| -|..+|..|...|++|++.|.+++..+.+++.+... ++...++.+++|+|...=|.+
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~ 88 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPR 88 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCH
Confidence 5889999999 999999999999999999999998777666654322 122234455566655555443
No 255
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.62 E-value=0.00021 Score=63.74 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=58.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCC------CHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP------SPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~------~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
+++|+|+|+|.+|..-.+.+++.|.+|+++|+++++.+.+++.|...+- ..+++-+..|+++.++| +......
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~ 245 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPS 245 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHH
Confidence 6899999999999999999999999999999999988777665542211 11222222677777766 4433332
Q ss_pred hcccccccccCCCCCEEEEe
Q 022909 145 ACGKHGAASGMGPGKGYVDV 164 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~ 164 (290)
++.++++..++-+
T Consensus 246 -------l~~l~~~G~~v~v 258 (339)
T COG1064 246 -------LKALRRGGTLVLV 258 (339)
T ss_pred -------HHHHhcCCEEEEE
Confidence 3445555555544
No 256
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.62 E-value=0.00027 Score=61.50 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=59.5
Q ss_pred CCeEEEEccc-HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G-~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||-+ .+|+.++..|...|..|+++.... .++.+.+++||+||.++..+.- + .
T Consensus 157 Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvGkp~~----i--~- 215 (281)
T PRK14183 157 GKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVGKPNL----I--T- 215 (281)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCcccc----c--C-
Confidence 8999999987 899999999999999999775321 2567889999999999977442 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.++.++|+++||++.
T Consensus 216 --~~~vk~gavvIDvGi 230 (281)
T PRK14183 216 --EDMVKEGAIVIDIGI 230 (281)
T ss_pred --HHHcCCCcEEEEeec
Confidence 356789999999974
No 257
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.60 E-value=0.00015 Score=64.99 Aligned_cols=112 Identities=14% Similarity=0.209 Sum_probs=76.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHH-CC-CeEEEEeCCccchhhHHhC-CCccCCCHHHHhhcCCeEEEEeCChhHHHHH-h
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDV-A 145 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~-~g-~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~-~ 145 (290)
+++|.|+|+ |.||+.+++.|.. .| .++++++|++++...+.+. +.....++++.+.++|+|+.+...+. .+ +
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~---~~~I 231 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPK---GVEI 231 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCc---CCcC
Confidence 799999998 8999999999975 45 4899999988777665542 11122367889999999987764322 22 3
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCCCC
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSK 195 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~ 195 (290)
++ +.++++.++||++.-.-++. ...+.++.+++..+...+
T Consensus 232 --~~---~~l~~~~~viDiAvPRDVd~-----~v~~~~V~v~~gG~V~~p 271 (340)
T PRK14982 232 --DP---ETLKKPCLMIDGGYPKNLDT-----KVQGPGIHVLKGGIVEHS 271 (340)
T ss_pred --CH---HHhCCCeEEEEecCCCCCCc-----ccCCCCEEEEeCCccccC
Confidence 22 34578999999976544432 122367777775554433
No 258
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.59 E-value=0.00013 Score=58.94 Aligned_cols=67 Identities=22% Similarity=0.211 Sum_probs=51.2
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-----CCCccCCCHHHHhhcCCeEEEEeCCh
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----LGAKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-----~g~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
|||+|||+ |.+|+.+++-+...||+|++.-|++.+....+. ..+.-.+++.+.+..-|+||.+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 68999995 999999999999999999999999987654321 12222234456788899999987543
No 259
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.58 E-value=0.00023 Score=66.78 Aligned_cols=69 Identities=26% Similarity=0.323 Sum_probs=53.4
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh-CCCccC-------CCHHHH-hhcCCeEEEEeCChhH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKYQ-------PSPDEV-AASCDVTFAMLADPES 140 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~~-------~~~~~~-~~~aDivv~~~p~~~~ 140 (290)
|+|.|+|+|++|+.+++.|...|++|.++++++++.+.+.+ .++... ..++++ +.++|.|+++++....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence 57999999999999999999999999999999988777655 332211 123444 6789999999876443
No 260
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.56 E-value=0.00037 Score=61.19 Aligned_cols=74 Identities=24% Similarity=0.322 Sum_probs=60.2
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||- ..+|+.++..|...|..|+++.... .++.+..++|||||.+++.+. ++ .
T Consensus 158 Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvGkp~----~i--~- 216 (297)
T PRK14186 158 GKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAGRPN----LI--G- 216 (297)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcC----cc--C-
Confidence 899999995 7789999999999999999885431 267788999999999998754 33 1
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.+++++|+++||++..
T Consensus 217 --~~~ik~gavVIDvGin 232 (297)
T PRK14186 217 --AEMVKPGAVVVDVGIH 232 (297)
T ss_pred --HHHcCCCCEEEEeccc
Confidence 4568999999999643
No 261
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.55 E-value=0.00038 Score=60.66 Aligned_cols=73 Identities=21% Similarity=0.358 Sum_probs=59.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||- ..+|+.++..|...|..|+++.... .++.+..++|||||.+++.+.- + .
T Consensus 156 Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~p~~----i--~- 214 (282)
T PRK14169 156 GKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGVPHF----I--G- 214 (282)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCCcCc----c--C-
Confidence 899999995 7789999999999999999885432 2577889999999999987543 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.+++++|+++||++.
T Consensus 215 --~~~vk~GavVIDvGi 229 (282)
T PRK14169 215 --ADAVKPGAVVIDVGI 229 (282)
T ss_pred --HHHcCCCcEEEEeec
Confidence 356899999999964
No 262
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.55 E-value=0.0004 Score=60.53 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=60.8
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.||| ...+|+.++..|...|..|++++... .++.+..++||+||.++..+.- + .
T Consensus 159 Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvGk~~~----i--~- 217 (284)
T PRK14177 159 GKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVGKPEF----I--K- 217 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCCCcCc----c--C-
Confidence 89999999 57899999999999999999887432 3577889999999999987543 3 1
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.++.++|+++||++..
T Consensus 218 --~~~ik~gavVIDvGin 233 (284)
T PRK14177 218 --ADWISEGAVLLDAGYN 233 (284)
T ss_pred --HHHcCCCCEEEEecCc
Confidence 4567999999999753
No 263
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.55 E-value=0.0004 Score=60.71 Aligned_cols=74 Identities=24% Similarity=0.353 Sum_probs=60.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.||| ...+|+.++..|...|..|+++.... .++.+..++|||||.++..+. ++ .
T Consensus 155 Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvGkp~----~i--~- 213 (287)
T PRK14173 155 GKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVGRPH----LI--T- 213 (287)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcC----cc--C-
Confidence 89999999 47889999999999999999886432 257788999999999998753 33 1
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.+++|+|+++||++..
T Consensus 214 --~~~vk~GavVIDVGin 229 (287)
T PRK14173 214 --PEMVRPGAVVVDVGIN 229 (287)
T ss_pred --HHHcCCCCEEEEccCc
Confidence 3567999999999643
No 264
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.53 E-value=0.00042 Score=60.31 Aligned_cols=73 Identities=25% Similarity=0.367 Sum_probs=59.9
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||- ..+|+.++..|...|..|+++.... .++.+..++||+||.+++.+.- + .
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~~~ADIvIsAvGkp~~----i--~- 216 (278)
T PRK14172 158 GKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVCKKADILVVAIGRPKF----I--D- 216 (278)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc----c--C-
Confidence 899999995 7789999999999999999887432 3677889999999999987543 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.++.++|+++||++.
T Consensus 217 --~~~ik~gavVIDvGi 231 (278)
T PRK14172 217 --EEYVKEGAIVIDVGT 231 (278)
T ss_pred --HHHcCCCcEEEEeec
Confidence 356899999999953
No 265
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.52 E-value=0.00037 Score=61.28 Aligned_cols=111 Identities=18% Similarity=0.153 Sum_probs=73.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC-----CC---ccCC--CHHHHhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-----GA---KYQP--SPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~-----g~---~~~~--~~~~~~~~aDivv~~~p~~~ 139 (290)
++++.|+|+|..|++++-.|...|. +|++++|+.++.+.+.+. +. ...+ +.++.+..+|+||.++|...
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm 206 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGM 206 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCC
Confidence 6899999999999999999999997 799999999887776542 11 1111 12345678999999998543
Q ss_pred HHH-H-HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 140 SAM-D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 140 ~~~-~-~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.-. . .+ + ...+.++.++.|+--.+.. -.+.++.++.|...++
T Consensus 207 ~~~~~~~~--~---~~~l~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~~~ 250 (283)
T PRK14027 207 PAHPGTAF--D---VSCLTKDHWVGDVVYMPIE--TELLKAARALGCETLD 250 (283)
T ss_pred CCCCCCCC--C---HHHcCCCcEEEEcccCCCC--CHHHHHHHHCCCEEEc
Confidence 110 0 01 1 2345677788888544422 2456666666665554
No 266
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.52 E-value=0.00043 Score=60.32 Aligned_cols=73 Identities=23% Similarity=0.258 Sum_probs=59.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||- ..+|+.++..|...|..|+++.... .++.+..++|||||.++..+.- + .
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp~~----i--~- 215 (282)
T PRK14166 157 GKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNL----L--R- 215 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc----c--C-
Confidence 899999995 7789999999999999999887532 3577889999999999987543 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.++.++|+++||++-
T Consensus 216 --~~~vk~GavVIDvGi 230 (282)
T PRK14166 216 --SDMVKEGVIVVDVGI 230 (282)
T ss_pred --HHHcCCCCEEEEecc
Confidence 345789999999963
No 267
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.52 E-value=0.00045 Score=60.36 Aligned_cols=74 Identities=22% Similarity=0.343 Sum_probs=60.4
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.||| ...+|+.++..|...|..|+++.... .++.+.+++||+||.++..+. ++ .
T Consensus 158 Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t--------------~~l~~~~~~ADIvI~AvG~p~----~i--~- 216 (284)
T PRK14190 158 GKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT--------------KNLAELTKQADILIVAVGKPK----LI--T- 216 (284)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCC----cC--C-
Confidence 89999999 58899999999999999999886421 367788999999999997754 34 2
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.+++++|+++||++..
T Consensus 217 --~~~ik~gavVIDvGi~ 232 (284)
T PRK14190 217 --ADMVKEGAVVIDVGVN 232 (284)
T ss_pred --HHHcCCCCEEEEeecc
Confidence 3557999999999743
No 268
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.52 E-value=0.00046 Score=60.18 Aligned_cols=74 Identities=26% Similarity=0.305 Sum_probs=60.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||- ..+|+.++..|...|..|+++.... .++.+.+++|||||.+++.+.- + .
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~~~~----i--~- 215 (284)
T PRK14170 157 GKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATGLAKF----V--K- 215 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCc----c--C-
Confidence 899999995 6789999999999999999886432 3577889999999999987543 3 1
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.++.++|+++||++..
T Consensus 216 --~~~vk~GavVIDvGin 231 (284)
T PRK14170 216 --KDYIKPGAIVIDVGMD 231 (284)
T ss_pred --HHHcCCCCEEEEccCc
Confidence 3567899999999754
No 269
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.51 E-value=0.0009 Score=55.92 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=31.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..+|.|+|+|.+|..+++.|...|. +++++|++.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 7899999999999999999999997 899999874
No 270
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.50 E-value=0.00016 Score=53.66 Aligned_cols=85 Identities=21% Similarity=0.163 Sum_probs=53.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-cCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||.|.+|..=++.|...|.+|+++++.. +..++ .+. ....+++.++++|+|+.+++. +.....+
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~~-~i~~~~~~~~~~l~~~~lV~~at~d-~~~n~~i---- 77 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSEG-LIQLIRREFEEDLDGADLVFAATDD-PELNEAI---- 77 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHHT-SCEEEESS-GGGCTTESEEEE-SS--HHHHHHH----
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhhh-HHHHHhhhHHHHHhhheEEEecCCC-HHHHHHH----
Confidence 7999999999999999999999999999999885 11111 111 112334557788888888655 3333333
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
....+.-.+++|++.
T Consensus 78 --~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 78 --YADARARGILVNVVD 92 (103)
T ss_dssp --HHHHHHTTSEEEETT
T ss_pred --HHHHhhCCEEEEECC
Confidence 222333456677643
No 271
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.49 E-value=0.00035 Score=63.93 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=61.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHC-CCeEEEEeCCccchhhHHhCC-------CccCCCHHH-HhhcCCeEEEEeCChhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLG-------AKYQPSPDE-VAASCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~-g~~V~~~d~~~~~~~~~~~~g-------~~~~~~~~~-~~~~aDivv~~~p~~~~ 140 (290)
.+||+|+|+ |.+|+.+.+.|..+ +++|..+.++....+.+.+.. .....+.+. .++++|+|++++|. ..
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~-~~ 116 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH-GT 116 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCH-HH
Confidence 689999995 99999999999988 678887776544332222211 111122222 25789999999986 44
Q ss_pred HHHHhcccccccccCCCCCEEEEecCCChhHH
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTS 172 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~ 172 (290)
..++. +.++.+..+||.|...-.+.
T Consensus 117 s~~i~-------~~~~~g~~VIDlSs~fRl~~ 141 (381)
T PLN02968 117 TQEII-------KALPKDLKIVDLSADFRLRD 141 (381)
T ss_pred HHHHH-------HHHhCCCEEEEcCchhccCC
Confidence 44544 22456889999986554443
No 272
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.48 E-value=0.00052 Score=59.95 Aligned_cols=73 Identities=23% Similarity=0.420 Sum_probs=59.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||- .-+|+.++..|...|..|+++.... .++.+..++|||||.++..+. ++ .
T Consensus 159 GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvGkp~----~i--~- 217 (288)
T PRK14171 159 GKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIGSPL----KL--T- 217 (288)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCCC----cc--C-
Confidence 899999995 6789999999999999999876422 367788999999999998753 33 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.++.|+|+++||++-
T Consensus 218 --~~~vk~GavVIDvGi 232 (288)
T PRK14171 218 --AEYFNPESIVIDVGI 232 (288)
T ss_pred --HHHcCCCCEEEEeec
Confidence 356799999999963
No 273
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.48 E-value=0.00051 Score=59.86 Aligned_cols=73 Identities=22% Similarity=0.310 Sum_probs=59.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||- ..+|+.++..|...|..|+++.... .++.+..++||+||.+++.+.- + .
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGkp~~----i--~- 216 (282)
T PRK14180 158 GAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKPNF----I--T- 216 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCCcCc----C--C-
Confidence 899999995 7789999999999999999886432 2567778999999999987543 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.++.++|+++||++.
T Consensus 217 --~~~vk~gavVIDvGi 231 (282)
T PRK14180 217 --ADMVKEGAVVIDVGI 231 (282)
T ss_pred --HHHcCCCcEEEEecc
Confidence 356789999999964
No 274
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.46 E-value=0.0018 Score=60.80 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=32.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
+++|.|+|.|.+|.++|+.|++.|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 6999999999999999999999999999999975
No 275
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.46 E-value=0.00057 Score=59.88 Aligned_cols=73 Identities=26% Similarity=0.333 Sum_probs=59.9
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||- ..+|+.++..|...|..|+++.... .++.+.+++|||||.+++.+.- + .
T Consensus 160 Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGkp~~----i--~- 218 (294)
T PRK14187 160 GSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGIPNF----V--K- 218 (294)
T ss_pred CCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCc----c--C-
Confidence 899999995 7789999999999999999887532 3577889999999999987543 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.++.++|+++||++.
T Consensus 219 --~~~ik~gaiVIDVGi 233 (294)
T PRK14187 219 --YSWIKKGAIVIDVGI 233 (294)
T ss_pred --HHHcCCCCEEEEecc
Confidence 356789999999963
No 276
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.45 E-value=0.00025 Score=63.95 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=31.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
.++|.|||+|.+|..+|+.|...|+ +++++|++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 7899999999999999999999998 899999874
No 277
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.45 E-value=0.00072 Score=60.06 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=47.3
Q ss_pred EEEEcccHhHHHHHHHHHHCC--CeEEEEeCCccchhhHHh-------C----CCccCCCHHHHhhcCCeEEEEeCC
Q 022909 74 IGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLIS-------L----GAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 74 IgiiG~G~iG~~la~~l~~~g--~~V~~~d~~~~~~~~~~~-------~----g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
|+|||+|.+|..+|-.++..| .++.++|+++++.+.... . .+....+ .+.+++||+|+++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCC
Confidence 689999999999999999888 589999998876544322 0 0111234 4578999999999874
No 278
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.45 E-value=0.0006 Score=59.88 Aligned_cols=73 Identities=29% Similarity=0.462 Sum_probs=60.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+++|.|||- ..+|+.++..|...|..|+++... +.++++.+++||+||.++..+ +++ .
T Consensus 167 Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~----~~i--~- 225 (299)
T PLN02516 167 GKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQA----MMI--K- 225 (299)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCc----Ccc--C-
Confidence 899999995 678999999999999999988643 236788899999999999774 344 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.+++++|+++||++.
T Consensus 226 --~~~vk~gavVIDvGi 240 (299)
T PLN02516 226 --GDWIKPGAAVIDVGT 240 (299)
T ss_pred --HHHcCCCCEEEEeec
Confidence 466899999999964
No 279
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.44 E-value=0.00063 Score=59.39 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=60.0
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHH--CCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLK--AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~--~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~ 147 (290)
++++.||| ...+|+.++..|.. .+..|+++... +.++.+.+++||+||.++..+. ++
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~----~i-- 217 (284)
T PRK14193 158 GAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAH----LV-- 217 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcC----cc--
Confidence 89999999 57899999999988 68899988643 2367888999999999998754 33
Q ss_pred cccccccCCCCCEEEEecCC
Q 022909 148 KHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~ 167 (290)
. .+++++|+++||++..
T Consensus 218 ~---~~~ik~GavVIDvGin 234 (284)
T PRK14193 218 T---ADMVKPGAAVLDVGVS 234 (284)
T ss_pred C---HHHcCCCCEEEEcccc
Confidence 1 4568999999999643
No 280
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.44 E-value=0.0015 Score=58.10 Aligned_cols=168 Identities=23% Similarity=0.318 Sum_probs=92.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC--------CCe--EE-EEeCCccchhhHHhCC-CccCCCH-----HHHhh--cCCeE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA--------GCD--VT-VWNRTKSKCDPLISLG-AKYQPSP-----DEVAA--SCDVT 131 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~--------g~~--V~-~~d~~~~~~~~~~~~g-~~~~~~~-----~~~~~--~aDiv 131 (290)
..+|+|+|+|.+|+.+++.|..+ |.+ |. +.+|+........-.+ ....++. .+++. +.|+|
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDIDVV 82 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCCEE
Confidence 58899999999999999999774 333 33 4455443322111111 1122223 34443 46789
Q ss_pred EEEeCCh-hHHHHHhcccccccccCCCCCEEEEecCCChhH--HHHHHHHHHHcCCcEE-eCccCCCCccccCCceEEEe
Q 022909 132 FAMLADP-ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT--SKLINGHIKATGASFL-EAPVSGSKKPAEDGQLIFLA 207 (290)
Q Consensus 132 v~~~p~~-~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~--~~~l~~~l~~~~~~~~-~~p~~~~~~~~~~~~~~~~~ 207 (290)
+.+++.+ ...+. . ....+.++.|..+|-. +-.+.. -.+|.+..++.+..+. .+.+.++.|
T Consensus 83 ve~~~~d~~~~~~-~---~~~~~al~~GkhVVTa-NK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiP----------- 146 (333)
T COG0460 83 VELVGGDVEPAEP-A---DLYLKALENGKHVVTA-NKALLALHYHELREAAEKNGVKLLYEATVGGGIP----------- 146 (333)
T ss_pred EecCcccCCchhh-H---HHHHHHHHcCCeEECC-CchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcc-----------
Confidence 9888863 22331 1 1235678889888733 323322 3467777777666543 344444332
Q ss_pred cCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH----HHHHHHHHHHHHCCC
Q 022909 208 AGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS----CTFSYSFLTLEFVDF 266 (290)
Q Consensus 208 ~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~----~~~~ea~~l~~~~G~ 266 (290)
.++.+++.+. |.++..+..+-++-. |++..-| ..+.|+++.|++.|.
T Consensus 147 -----iI~~lr~~l~--g~~I~~i~GIlNGT~-----NyIlt~m~~~~~~f~dal~eAq~lGy 197 (333)
T COG0460 147 -----IIKLLRELLA--GDEILSIRGILNGTT-----NYILTRMEEGGLSFEDALAEAQELGY 197 (333)
T ss_pred -----hHHHHHhhcc--cCceEEEEEEEeccH-----HHHHHHHHccCCCHHHHHHHHHHcCC
Confidence 3345666666 666665554333322 2222222 256777777788775
No 281
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.44 E-value=0.00069 Score=59.04 Aligned_cols=73 Identities=25% Similarity=0.319 Sum_probs=59.4
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.||| ...+|+.++..|...+..|+++.... .++.+..++||+||.+++.+. ++ .
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvGk~~----~i--~- 215 (282)
T PRK14182 157 GKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIGKAE----LV--K- 215 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcC----cc--C-
Confidence 89999999 57789999999999999999886432 357788899999999998643 33 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.++.++|+++||++.
T Consensus 216 --~~~ik~gaiVIDvGi 230 (282)
T PRK14182 216 --GAWVKEGAVVIDVGM 230 (282)
T ss_pred --HHHcCCCCEEEEeec
Confidence 356799999999964
No 282
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.43 E-value=0.0013 Score=62.41 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=51.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCC--CHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP--SPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~--~~~~~~~~aDivv~~~ 135 (290)
+++|.|+|+|..|.+.++.|...|++|+++|+++...+.+.+.|+.... ...+.++++|+||.+-
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~Sp 78 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSP 78 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECC
Confidence 6899999999999999999999999999999876655555555665432 2345567899888864
No 283
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.42 E-value=0.0006 Score=56.96 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=50.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc-hhhHHhCC-CccC--CCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLG-AKYQ--PSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~-~~~~~~~g-~~~~--~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
+++|.|||.|.+|...++.|...|++|+++++...+ ...+.+.+ +... .-.++.+.++|+|+.++.. +++...+
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d-~elN~~i 87 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATND-PRVNEQV 87 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCC-HHHHHHH
Confidence 899999999999999999999999999999876432 22333222 2111 1113346788988888755 4444444
No 284
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.42 E-value=0.0011 Score=64.86 Aligned_cols=109 Identities=18% Similarity=0.259 Sum_probs=72.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC---CCHHHHh-----hcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ---PSPDEVA-----ASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~~~~~~~-----~~aDivv~~~p~~~~~~ 142 (290)
..+|-|+|+|++|+.+++.|.+.|.++++.|.++++.+.+++.|.... .+-.+++ +++|.++++++.++...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 478999999999999999999999999999999999888887665321 1222333 47899999997766655
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.+.. ..+.+.|+..++--++ +. .-.+.+++.|+..+.
T Consensus 480 ~i~~----~ar~~~p~~~iiaRa~-d~----~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 480 QLVE----LVKEHFPHLQIIARAR-DV----DHYIRLRQAGVEKPE 516 (621)
T ss_pred HHHH----HHHHhCCCCeEEEEEC-CH----HHHHHHHHCCCCEEe
Confidence 5541 2333445544443222 11 223445555666554
No 285
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.42 E-value=0.0013 Score=61.92 Aligned_cols=64 Identities=23% Similarity=0.428 Sum_probs=48.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccch-----hhHHhCCCccC--CCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC-----DPLISLGAKYQ--PSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~-----~~~~~~g~~~~--~~~~~~~~~aDivv~~ 134 (290)
+++|+|+|+|..|.++|+.|...|++|.++|+++... ..+.+.|+... ....+.+.++|+||..
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S 84 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT 84 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC
Confidence 6899999999999999999999999999999875321 23555566543 2234556789998886
No 286
>PRK15076 alpha-galactosidase; Provisional
Probab=97.42 E-value=0.00022 Score=66.42 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=47.2
Q ss_pred CeEEEEcccHhHHHHHH--HHH----HCCCeEEEEeCCccchhhHHh--------CC----CccCCCHHHHhhcCCeEEE
Q 022909 72 GRIGFLGMGIMGTPMAQ--NLL----KAGCDVTVWNRTKSKCDPLIS--------LG----AKYQPSPDEVAASCDVTFA 133 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~--~l~----~~g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~aDivv~ 133 (290)
+||+|||.|.+|...+- .+. -.+.+|.++|+++++.+.... .+ +..+++..+++++||+|++
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 68999999999965544 332 135689999999877553211 11 3345677899999999999
Q ss_pred EeCC
Q 022909 134 MLAD 137 (290)
Q Consensus 134 ~~p~ 137 (290)
+.-.
T Consensus 82 ti~v 85 (431)
T PRK15076 82 AIQV 85 (431)
T ss_pred eeee
Confidence 8765
No 287
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.41 E-value=0.002 Score=50.56 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=67.5
Q ss_pred eEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh--------CCCccCCCHHHHhhc--CCeEEEEeCChhHH
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LGAKYQPSPDEVAAS--CDVTFAMLADPESA 141 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~~--aDivv~~~p~~~~~ 141 (290)
+|.|||+|.+|..+++.|...|. +++++|.+.-....+.. .|...++.+.+.+++ .++-+...+.....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 58999999999999999999998 79999987433222211 122222222222221 23333333322111
Q ss_pred HHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
.. ..+.+++-.++|++... ......+.+.+++.++.++++...+
T Consensus 81 ~~-------~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 81 DN-------LDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hh-------HHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 11 02234566688887554 5556678888888899998876654
No 288
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.40 E-value=0.00064 Score=60.92 Aligned_cols=73 Identities=23% Similarity=0.434 Sum_probs=59.8
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.||| ..-+|+.++..|...+..|+++.... .++.+.+++|||||.++..+.- + .
T Consensus 231 GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvGkp~~----i--~- 289 (364)
T PLN02616 231 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVGQPNM----V--R- 289 (364)
T ss_pred CCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc----C--C-
Confidence 89999999 57889999999999999999886432 3677889999999999987543 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.++.|+|+++||++-
T Consensus 290 --~d~vK~GAvVIDVGI 304 (364)
T PLN02616 290 --GSWIKPGAVVIDVGI 304 (364)
T ss_pred --HHHcCCCCEEEeccc
Confidence 356899999999853
No 289
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.40 E-value=0.00067 Score=60.51 Aligned_cols=73 Identities=23% Similarity=0.373 Sum_probs=59.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||- ..+|+.++..|...|..|+++.... .++.+..++|||||.++..+.- + .
T Consensus 214 GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvGkp~~----v--~- 272 (345)
T PLN02897 214 GKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAGIPNL----V--R- 272 (345)
T ss_pred CCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccCCcCc----c--C-
Confidence 899999995 6789999999999999999886432 2567889999999999987543 3 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.+++|+|+++||++.
T Consensus 273 --~d~vk~GavVIDVGi 287 (345)
T PLN02897 273 --GSWLKPGAVVIDVGT 287 (345)
T ss_pred --HHHcCCCCEEEEccc
Confidence 356899999999964
No 290
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.38 E-value=0.00084 Score=58.65 Aligned_cols=73 Identities=23% Similarity=0.364 Sum_probs=58.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHC----CCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
++++.|||- ..+|+.++..|... +..|+++.... .++.+.+++||+||.+++.+. ++
T Consensus 153 Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~p~----~i 214 (287)
T PRK14181 153 GRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGVPL----FI 214 (287)
T ss_pred CCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcC----cc
Confidence 899999995 67899999999988 77888776422 367788999999999998753 33
Q ss_pred cccccccccCCCCCEEEEecC
Q 022909 146 CGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~ 166 (290)
. .+++|+|+++||++.
T Consensus 215 --~---~~~ik~GavVIDvGi 230 (287)
T PRK14181 215 --K---EEMIAEKAVIVDVGT 230 (287)
T ss_pred --C---HHHcCCCCEEEEecc
Confidence 1 456899999999964
No 291
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.38 E-value=0.00096 Score=59.14 Aligned_cols=110 Identities=14% Similarity=0.071 Sum_probs=76.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHH---HHHhc-
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA---MDVAC- 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~---~~~~~- 146 (290)
+++++|||--.=-..+++.|.+.|++|.++.-..+. ....|+...++.+++++++|+|+..+|.+.+. +..+.
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccc---cccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence 689999999988899999999999999987643221 12346777778889999999999888754221 11100
Q ss_pred ----ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 147 ----GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 147 ----~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
-+++.++.|+++.+++ .+...+. +.+.+.++++.+++
T Consensus 79 ~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~~~~ 119 (296)
T PRK08306 79 EKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRKLVE 119 (296)
T ss_pred cCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCeEEE
Confidence 0234578899998554 3444443 33556678888766
No 292
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.37 E-value=0.0016 Score=61.10 Aligned_cols=107 Identities=19% Similarity=0.275 Sum_probs=75.2
Q ss_pred CCeEEEEcc----cHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGM----GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~----G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
.++|+|||. |++|..+.+.+...|+ +|+.+++..+. -.|+..+.+++|+-...|++++++|. +.+..+
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~-----i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~~~ 80 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE-----ILGVKAYPSVLEIPDPVDLAVIVVPA-KYVPQV 80 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc-----cCCccccCCHHHCCCCCCEEEEecCH-HHHHHH
Confidence 689999999 8899999999999888 67766665432 14677788999987788999999986 555666
Q ss_pred hcccccccccCCCCCEEEEecCCC-------hhHHHHHHHHHHHcCCcEEe
Q 022909 145 ACGKHGAASGMGPGKGYVDVSTVD-------GDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~~~-------~~~~~~l~~~l~~~~~~~~~ 188 (290)
+ ++..+ ..-..++|- +.+- ...++++.+..++.++++++
T Consensus 81 l---~e~~~-~gv~~~vi~-s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 81 V---EECGE-KGVKGAVVI-TAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred H---HHHHh-cCCCEEEEE-CCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 5 22222 233344442 2222 22456788888888888765
No 293
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=97.37 E-value=0.00085 Score=58.63 Aligned_cols=108 Identities=17% Similarity=0.222 Sum_probs=73.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC-CCccCCCHHHH-hhcCCeEEEEeCChhH--H--HH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAKYQPSPDEV-AASCDVTFAMLADPES--A--MD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~-~~~aDivv~~~p~~~~--~--~~ 143 (290)
++++.|+|+|..+++++..|...|. +|++++|++++.+.+.+. +.... +++ ...+|+||.++|.... . ..
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~---~~~~~~~~dlvINaTp~Gm~~~~~~~~ 198 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR---PDLGGIEADILVNVTPIGMAGGPEADK 198 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch---hhcccccCCEEEECCccccCCCCcccc
Confidence 4689999999999999999999997 599999999888777652 22111 111 2458999999985321 0 00
Q ss_pred -HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 144 -VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 144 -~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
-+ + ...++++.+++|+.-.+.. -.+.+..++.|...++
T Consensus 199 ~pi--~---~~~l~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 199 LAF--P---EAEIDAASVVFDVVALPAE--TPLIRYARARGKTVIT 237 (272)
T ss_pred CCC--C---HHHcCCCCEEEEeecCCcc--CHHHHHHHHCcCeEeC
Confidence 11 1 2346778888888654432 2566666777766654
No 294
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.37 E-value=0.00039 Score=62.24 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=43.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~ 134 (290)
+++|.|||+|.||+.+++.|...|. +|++++|+.... .+.+.. . ...+...++|+||.+
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~-~~~~~~---~-~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL-PYRTVV---R-EELSFQDPYDVIFFG 233 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc-chhhhh---h-hhhhcccCCCEEEEc
Confidence 7999999999999999999999995 699999997531 111100 0 111345689999986
No 295
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.36 E-value=0.0007 Score=60.39 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=46.5
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCCC--eEEEEeCCc--cchhhHH----h----CC----CccCCCHHHHhhcCCeEEEE
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTK--SKCDPLI----S----LG----AKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g~--~V~~~d~~~--~~~~~~~----~----~g----~~~~~~~~~~~~~aDivv~~ 134 (290)
|||+|+|+ |.+|..++..+...|+ +|.++|+++ ++.+..+ + .+ +....+.+ .++++|+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~-~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLS-DVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHH-HhCCCCEEEEe
Confidence 68999997 9999999999999886 599999954 3321111 1 11 12233544 58999999999
Q ss_pred eCC
Q 022909 135 LAD 137 (290)
Q Consensus 135 ~p~ 137 (290)
...
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 864
No 296
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=97.34 E-value=0.0032 Score=55.46 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=74.7
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccc-hhhHHhCCCccCCCHHHHhhc--CCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~--aDivv~~~p~~~~~~~~~~ 146 (290)
+.+|.|.|. |++|..+.+.|..+|++ .+|-.+|.+ .++ -.|+..+.+++|+-+. .|+.++++|. +.+...+
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~--v~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l- 82 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFNTVAEAVEATGANASVIYVPP-PFAADAI- 82 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCe--EeCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHH-
Confidence 578999995 99999999999999987 444444431 111 1467778899998886 8999999986 5555555
Q ss_pred ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++..+ ..-...+|-.+.....+++++.+..++.++++++
T Consensus 83 --~e~~~-~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlG 121 (291)
T PRK05678 83 --LEAID-AGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIG 121 (291)
T ss_pred --HHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC
Confidence 22222 2223334434344444455888888888888876
No 297
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=97.34 E-value=0.0032 Score=55.30 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=76.9
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhc--CCeEEEEeCChhHHHHHhcc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVACG 147 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivv~~~p~~~~~~~~~~~ 147 (290)
+.+|.|.| .|.+|+.+-+.+...|.+ .++..+|.+-.. .-.|+..+.+++|+-+. .|+.++++|. ..+...+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~-~v~G~~~y~sv~dlp~~~~~Dlavi~vpa-~~v~~~l-- 80 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGT-TVLGLPVFDSVKEAVEETGANASVIFVPA-PFAADAI-- 80 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcc-eecCeeccCCHHHHhhccCCCEEEEecCH-HHHHHHH--
Confidence 67899999 699999999999999988 556666652110 12578888899998876 6999999986 5555555
Q ss_pred cccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 148 ~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++..+ ..-...+|-.+.....+++++.+..++.++++++
T Consensus 81 -~e~~~-~Gvk~avIis~Gf~e~~~~~l~~~a~~~girilG 119 (286)
T TIGR01019 81 -FEAID-AGIELIVCITEGIPVHDMLKVKRYMEESGTRLIG 119 (286)
T ss_pred -HHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC
Confidence 22222 1222344434344444567888888888888776
No 298
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.34 E-value=0.0012 Score=58.16 Aligned_cols=113 Identities=14% Similarity=0.092 Sum_probs=72.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCcc---chhhHHhC-C----C-ccCCCH------HHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKS---KCDPLISL-G----A-KYQPSP------DEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~---~~~~~~~~-g----~-~~~~~~------~~~~~~aDivv~~ 134 (290)
++++.|+|+|..+++++..+...|. +|++++|+++ +.+.+.+. + . ....++ .+.+.++|+||.+
T Consensus 124 ~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEEC
Confidence 6899999999999999999998886 8999999954 55555431 1 1 011222 2345678999999
Q ss_pred eCChhH--HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 135 LADPES--AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 135 ~p~~~~--~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+|.... ..... ......++++.++.|+--.+.. -.+.++.+++|.+.++
T Consensus 204 Tp~Gm~~~~~~~~---~~~~~~l~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 204 TKVGMKPLENESL---VNDISLLHPGLLVTECVYNPHM--TKLLQQAQQAGCKTID 254 (288)
T ss_pred CCCCCCCCCCCCC---CCcHHHCCCCCEEEEecCCCcc--CHHHHHHHHCCCeEEC
Confidence 985321 11101 0012346778888888544432 2566777777776655
No 299
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.33 E-value=0.00034 Score=57.00 Aligned_cols=62 Identities=27% Similarity=0.393 Sum_probs=49.0
Q ss_pred EEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-------cCCCHHHHhhcCCeEEEEeCC
Q 022909 74 IGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------YQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 74 IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~aDivv~~~p~ 137 (290)
|.|+|. |.+|+.+++.|...|++|++..|++++.+. ..+++ -.+++.++++++|.|+.+++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 679995 999999999999999999999999887665 22221 112456678899999999874
No 300
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=97.29 E-value=0.00028 Score=52.56 Aligned_cols=81 Identities=14% Similarity=0.081 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCccchhhHH---hCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCC
Q 022909 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLI---SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPG 158 (290)
Q Consensus 82 iG~~la~~l~~~g~~V~~~d~~~~~~~~~~---~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~ 158 (290)
-+..+++.|.+.|.+|.+||+.-....... ..++...+++++.++.+|.||++++.+. .+.+- -+++...|+++
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~-f~~l~--~~~~~~~~~~~ 94 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDE-FRELD--WEEIAKLMRKP 94 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GG-GGCCG--HHHHHHHSCSS
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHH-HhccC--HHHHHHhcCCC
Confidence 457899999999999999999876544333 1467777899999999999999997643 33321 13345667788
Q ss_pred CEEEEec
Q 022909 159 KGYVDVS 165 (290)
Q Consensus 159 ~~lin~s 165 (290)
.+|+|+-
T Consensus 95 ~~iiD~~ 101 (106)
T PF03720_consen 95 PVIIDGR 101 (106)
T ss_dssp EEEEESS
T ss_pred CEEEECc
Confidence 8999873
No 301
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.28 E-value=0.0013 Score=61.24 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=67.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEE-e----------CCccchhhHHh-C-----------CCccCCCHHHHhh-
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVW-N----------RTKSKCDPLIS-L-----------GAKYQPSPDEVAA- 126 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~-d----------~~~~~~~~~~~-~-----------g~~~~~~~~~~~~- 126 (290)
++||+|.|+|++|+.+|+.|...|.+|++. | .+.+.+.+..+ . +.... +.++++.
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~~i~~~ 310 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGGSPWSV 310 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCcccccc
Confidence 799999999999999999999999998866 6 23222211111 0 11222 3344444
Q ss_pred cCCeEEEEeCChhHHHHHhcccccccccC-CCCC-EEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 127 SCDVTFAMLADPESAMDVACGKHGAASGM-GPGK-GYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 127 ~aDivv~~~p~~~~~~~~~~~~~~~~~~~-~~~~-~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+|||++-|...+.-+.+.. ..+ ++++ +|+-.++++. +.+-.+.|.++|+.++.
T Consensus 311 d~DVliPaAl~n~It~~~a-------~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~~vP 365 (445)
T PRK09414 311 PCDIALPCATQNELDEEDA-------KTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVLFAP 365 (445)
T ss_pred CCcEEEecCCcCcCCHHHH-------HHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 6999998876544433322 222 1233 4555555554 44566788889988764
No 302
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.27 E-value=0.00068 Score=58.35 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=65.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEE-EEeCC-----cc--chhhH------Hh-C------------CCccCCCHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT-----KS--KCDPL------IS-L------------GAKYQPSPDE 123 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~-~~d~~-----~~--~~~~~------~~-~------------g~~~~~~~~~ 123 (290)
++||.|.|+|++|+.+|+.|...|.+|+ +.|.+ ++ ..+.+ .+ . +.+.. +.++
T Consensus 38 g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~~~~ 116 (254)
T cd05313 38 GKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-EGKK 116 (254)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-CCcc
Confidence 7999999999999999999999999988 55521 11 01111 11 1 12222 3344
Q ss_pred Hh-hcCCeEEEEeCChhHHHHHhcccccccccCC-CCC-EEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 124 VA-ASCDVTFAMLADPESAMDVACGKHGAASGMG-PGK-GYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 124 ~~-~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~-~~~-~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++ .+|||++-|- +.+.+ +++..+.++ +++ +|+-.++++. +. +-.+.|.++|+.++.
T Consensus 117 ~~~~~~DIliPcA-----l~~~I--~~~na~~i~~~~ak~I~EgAN~p~-t~-~a~~~L~~rGI~vvP 175 (254)
T cd05313 117 PWEVPCDIAFPCA-----TQNEV--DAEDAKLLVKNGCKYVAEGANMPC-TA-EAIEVFRQAGVLFAP 175 (254)
T ss_pred hhcCCCcEEEecc-----ccccC--CHHHHHHHHHcCCEEEEeCCCCCC-CH-HHHHHHHHCCcEEEC
Confidence 44 3699988664 33444 333344442 233 4555545444 44 567889999988874
No 303
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.27 E-value=0.0013 Score=57.82 Aligned_cols=73 Identities=19% Similarity=0.328 Sum_probs=58.5
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHC----CCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
+++|.||| ...+|+.++..|... +..|+++.... .++.+.+++|||||.++..+.- +
T Consensus 161 Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~~~ADIvVsAvGkp~~----i 222 (297)
T PRK14168 161 GAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHCQRADILIVAAGVPNL----V 222 (297)
T ss_pred CCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHHhhCCEEEEecCCcCc----c
Confidence 89999999 578999999999987 67888875431 3677889999999999977442 3
Q ss_pred cccccccccCCCCCEEEEecC
Q 022909 146 CGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~ 166 (290)
. .+++++|+++||++.
T Consensus 223 --~---~~~ik~gavVIDvGi 238 (297)
T PRK14168 223 --K---PEWIKPGATVIDVGV 238 (297)
T ss_pred --C---HHHcCCCCEEEecCC
Confidence 1 456899999999964
No 304
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.26 E-value=0.0033 Score=59.22 Aligned_cols=64 Identities=14% Similarity=0.223 Sum_probs=48.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~ 134 (290)
+++|.|||.|..|.+.|+.|...|++|.++|..+.....+.+.|+.......+-+.++|+||..
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence 6899999999999999999999999999999775544444455665432222335689988764
No 305
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=97.26 E-value=0.00078 Score=60.87 Aligned_cols=89 Identities=12% Similarity=0.156 Sum_probs=53.9
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCC---eEEEE--eCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGC---DVTVW--NRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~---~V~~~--d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
.++|+|+| .|.+|+.+.+.|...+| ++... .++..+........+...+...+.++++|+|++++|.. ....+
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~~ 85 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKKF 85 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHHH
Confidence 68999999 59999999999998766 33322 23322221111111111111124458899999999874 34444
Q ss_pred hcccccccccCCCCCEEEEecC
Q 022909 145 ACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~ 166 (290)
. + ...+.|+.+||.|.
T Consensus 86 ~---~---~~~~~g~~VIDlS~ 101 (344)
T PLN02383 86 G---P---IAVDKGAVVVDNSS 101 (344)
T ss_pred H---H---HHHhCCCEEEECCc
Confidence 3 1 22346889999984
No 306
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.23 E-value=0.0015 Score=57.32 Aligned_cols=73 Identities=32% Similarity=0.453 Sum_probs=58.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHC----CCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
++++.|||- ..+|+.++..|... +..|+++.... .++.+..++|||||.+++.+.- +
T Consensus 157 GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGkp~~----i 218 (293)
T PRK14185 157 GKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQPEF----V 218 (293)
T ss_pred CCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCCcCc----c
Confidence 899999995 77899999999987 57888775432 3677889999999999987543 3
Q ss_pred cccccccccCCCCCEEEEecC
Q 022909 146 CGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~ 166 (290)
. .++.++|+++||++.
T Consensus 219 --~---~~~vk~gavVIDvGi 234 (293)
T PRK14185 219 --K---ADMVKEGAVVIDVGT 234 (293)
T ss_pred --C---HHHcCCCCEEEEecC
Confidence 1 356899999999964
No 307
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.22 E-value=0.00078 Score=60.77 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=55.1
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCe---EEEEeCCccchhhHHhCC--CccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCD---VTVWNRTKSKCDPLISLG--AKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~---V~~~d~~~~~~~~~~~~g--~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
++|+|+| .|.+|+.+.+.|...+++ +....+..+..+.+.-.+ +...+...+.++++|+||.|+|.. ..+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~~ 80 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKYA 80 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHHH
Confidence 6899999 599999999999997764 355544433222221111 222211123347899999999763 444443
Q ss_pred cccccccccCCCCCEEEEecC
Q 022909 146 CGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~ 166 (290)
-..++.|..+||.|.
T Consensus 81 ------~~~~~~G~~VIDlS~ 95 (334)
T PRK14874 81 ------PKAAAAGAVVIDNSS 95 (334)
T ss_pred ------HHHHhCCCEEEECCc
Confidence 123456889999875
No 308
>PRK05086 malate dehydrogenase; Provisional
Probab=97.21 E-value=0.0041 Score=55.55 Aligned_cols=66 Identities=20% Similarity=0.285 Sum_probs=45.9
Q ss_pred CeEEEEcc-cHhHHHHHHHHHH---CCCeEEEEeCCccch---hhHHhCC--Ccc----CCCHHHHhhcCCeEEEEeCC
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLK---AGCDVTVWNRTKSKC---DPLISLG--AKY----QPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~---~g~~V~~~d~~~~~~---~~~~~~g--~~~----~~~~~~~~~~aDivv~~~p~ 137 (290)
|||+|||+ |.+|++++..+.. .++++.++|+++... -.+.+.+ ... .+++.+.++++|+||++.-.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 68999999 9999999988844 346899999875431 1122211 111 34556778999999998764
No 309
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.20 E-value=0.0017 Score=58.13 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=64.8
Q ss_pred CeEEEEcccHhHHHHHHHHHH--------CCCeEE-EEeCCccc-------hhhH---HhCC-C--ccCC--CHHHHh-h
Q 022909 72 GRIGFLGMGIMGTPMAQNLLK--------AGCDVT-VWNRTKSK-------CDPL---ISLG-A--KYQP--SPDEVA-A 126 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~--------~g~~V~-~~d~~~~~-------~~~~---~~~g-~--~~~~--~~~~~~-~ 126 (290)
++|+|+|+|++|+.+++.|.. .+.+|. ++|++... .+.+ .+.+ + .... ++++++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 479999999999999999976 244543 55665321 1111 1111 1 1112 456654 3
Q ss_pred cCCeEEEEeCChhH---HHHHhcccccccccCCCCCEEEEecCCChh-HHHHHHHHHHHcCCcEE
Q 022909 127 SCDVTFAMLADPES---AMDVACGKHGAASGMGPGKGYVDVSTVDGD-TSKLINGHIKATGASFL 187 (290)
Q Consensus 127 ~aDivv~~~p~~~~---~~~~~~~~~~~~~~~~~~~~lin~s~~~~~-~~~~l~~~l~~~~~~~~ 187 (290)
++|+||-+.|.... ....+ .+.++.|..+|-.+-+... ...+|.+..++++.++.
T Consensus 81 ~~DVvVE~t~~~~~g~~~~~~~------~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~ 139 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREKNLY------INAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIR 139 (326)
T ss_pred CCCEEEECCCCCCcCchHHHHH------HHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEE
Confidence 68999999975321 22222 4567788888865433322 34566677777776653
No 310
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.19 E-value=0.0037 Score=59.83 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=48.9
Q ss_pred CCCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh---------CC------Ccc----C---CCHHHHhh
Q 022909 70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS---------LG------AKY----Q---PSPDEVAA 126 (290)
Q Consensus 70 ~~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~---------~g------~~~----~---~~~~~~~~ 126 (290)
++++|.|.|. |.||+.+++.|.+.|++|.+++|+.++...+.+ .| +.. . +++.+++.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLg 158 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALG 158 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhc
Confidence 4788999995 999999999999999999999999876544321 01 111 1 23444567
Q ss_pred cCCeEEEEeC
Q 022909 127 SCDVTFAMLA 136 (290)
Q Consensus 127 ~aDivv~~~p 136 (290)
++|+||.+..
T Consensus 159 giDiVVn~AG 168 (576)
T PLN03209 159 NASVVICCIG 168 (576)
T ss_pred CCCEEEEccc
Confidence 8999988764
No 311
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.19 E-value=0.022 Score=47.62 Aligned_cols=67 Identities=19% Similarity=0.170 Sum_probs=46.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc-hhhHHhCC-CccC--CCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLG-AKYQ--PSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~-~~~~~~~g-~~~~--~~~~~~~~~aDivv~~~p~ 137 (290)
+++|.|||.|.+|..-++.|...|.+|+++++.... ...+.+.+ +... .-..+.+.++|+|+.++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d 79 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDD 79 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCC
Confidence 799999999999999999999999999999987542 22333322 2211 1113345677877777544
No 312
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.0009 Score=59.84 Aligned_cols=66 Identities=26% Similarity=0.328 Sum_probs=48.9
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhh-HHhCCCc-cCC---CHHHHhhcCCeE---EEEeCC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-LISLGAK-YQP---SPDEVAASCDVT---FAMLAD 137 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~-~~~~g~~-~~~---~~~~~~~~aDiv---v~~~p~ 137 (290)
++|||||-|..|+.++......|++|++.|++++.... .++..+. ..+ .+.++++.||+| +.++|.
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~ 75 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPA 75 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCH
Confidence 78999999999999999999999999999998765332 2221111 112 467788899999 445554
No 313
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.17 E-value=0.00088 Score=59.85 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=49.0
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc-------CCCHHHHhhcCCeEEEEeC
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivv~~~p 136 (290)
|+|.|.| +|.+|+.+++.|...|++|.+.+|++++...+...++.. ..++.++++++|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5799999 599999999999999999999999876544333333321 2345677889999887653
No 314
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=97.16 E-value=0.002 Score=53.58 Aligned_cols=114 Identities=20% Similarity=0.228 Sum_probs=63.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh--------CCCccCCCHHHHhh--cCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LGAKYQPSPDEVAA--SCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~aDivv~~~p~~~ 139 (290)
..+|.|+|+|.+|..+++.|...|. +++++|.+.-....+.. .|-..+....+.++ +.|+-+...+..-
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~ 100 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDI 100 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCc
Confidence 7999999999999999999999997 69999976432222111 11111111111121 2444444332211
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
. .. ..+. ++.-.++|++ .........+.+...+.++.++.+...+
T Consensus 101 ~--~~---~~~~---~~~~dvVi~~-~~~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 101 S--EK---PEEF---FSQFDVVVAT-ELSRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred c--cc---HHHH---HhCCCEEEEC-CCCHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 1 10 0111 2233466665 3345555667777788888887765544
No 315
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.16 E-value=0.0018 Score=56.91 Aligned_cols=73 Identities=25% Similarity=0.362 Sum_probs=58.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHC----CCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
++++.|||- ..+|+.++..|... +..|+++.... .++.+..++|||||.++..+. ++
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvGkp~----~i 218 (297)
T PRK14167 157 GADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAGVPE----LI 218 (297)
T ss_pred CCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcC----cc
Confidence 899999995 77899999999876 78898875322 367788999999999997754 33
Q ss_pred cccccccccCCCCCEEEEecC
Q 022909 146 CGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~ 166 (290)
. .+++++|+++||++-
T Consensus 219 --~---~~~ik~gaiVIDvGi 234 (297)
T PRK14167 219 --D---GSMLSEGATVIDVGI 234 (297)
T ss_pred --C---HHHcCCCCEEEEccc
Confidence 1 356899999999963
No 316
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=97.16 E-value=0.0015 Score=56.17 Aligned_cols=110 Identities=18% Similarity=0.278 Sum_probs=66.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEE--------eCCccchhhHHh----CCC--ccCC----------CHH-HHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVW--------NRTKSKCDPLIS----LGA--KYQP----------SPD-EVA 125 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~--------d~~~~~~~~~~~----~g~--~~~~----------~~~-~~~ 125 (290)
++++.|-|+|++|..+|+.|...|.+|.+. |+..-+.+.+.+ .+. .... +.+ +++
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il 111 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEIL 111 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccccccc
Confidence 799999999999999999999999887654 554433333332 222 1111 121 555
Q ss_pred -hcCCeEEEEeCChhHHHHHhcccccccc-cCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 126 -ASCDVTFAMLADPESAMDVACGKHGAAS-GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 126 -~~aDivv~~~p~~~~~~~~~~~~~~~~~-~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.+|||++-|--. +.+ +++..+ .+++++-+|--+...+.+.++.. .|.++|+.++.
T Consensus 112 ~~~~DiliP~A~~-----~~I--~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~viP 168 (244)
T PF00208_consen 112 SVDCDILIPCALG-----NVI--NEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGILVIP 168 (244)
T ss_dssp TSSSSEEEEESSS-----TSB--SCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-EEE-
T ss_pred cccccEEEEcCCC-----Cee--CHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCEEEc
Confidence 479999988433 233 333344 55555555444444444454444 88899887763
No 317
>PRK05442 malate dehydrogenase; Provisional
Probab=97.15 E-value=0.0023 Score=57.45 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=46.2
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC-------eEEEEeCCccc--hhh----HHh------CCCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSK--CDP----LIS------LGAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~-------~V~~~d~~~~~--~~~----~~~------~g~~~~~~~~~~~~~aDi 130 (290)
++||+|||+ |.+|..+|-.+...|. ++.++|.++.. ++. +.+ .......+..+.+++||+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDi 83 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADV 83 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCE
Confidence 689999998 9999999998876553 79999985431 211 111 012233455577899999
Q ss_pred EEEEeC
Q 022909 131 TFAMLA 136 (290)
Q Consensus 131 vv~~~p 136 (290)
||++.-
T Consensus 84 VVitaG 89 (326)
T PRK05442 84 ALLVGA 89 (326)
T ss_pred EEEeCC
Confidence 998765
No 318
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.15 E-value=0.0021 Score=56.57 Aligned_cols=73 Identities=23% Similarity=0.390 Sum_probs=57.7
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHH----CCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLK----AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~----~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
++++.|||- ..+|+.++..|.. .+..|+.+..+. .++.+.+++||+||.+++.+ +++
T Consensus 159 Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~----~li 220 (295)
T PRK14174 159 GKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKA----RFI 220 (295)
T ss_pred CCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCcc----Ccc
Confidence 899999995 7789999999987 578888776542 25778899999999999764 334
Q ss_pred cccccccccCCCCCEEEEecC
Q 022909 146 CGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~ 166 (290)
. .+++++|+++||++-
T Consensus 221 --~---~~~vk~GavVIDVgi 236 (295)
T PRK14174 221 --T---ADMVKPGAVVIDVGI 236 (295)
T ss_pred --C---HHHcCCCCEEEEeec
Confidence 2 345699999999963
No 319
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=97.14 E-value=0.0021 Score=61.50 Aligned_cols=111 Identities=13% Similarity=0.074 Sum_probs=71.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-CCc--cCCCHHHHh-hcCCeEEEEeCChhH--HHH-
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAK--YQPSPDEVA-ASCDVTFAMLADPES--AMD- 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~--~~~~~~~~~-~~aDivv~~~p~~~~--~~~- 143 (290)
++++.|+|.|.+|++++..|...|++|.+++|+.++.+.+.+. +.. ...+..+.. ..+|+|+.++|.... ...
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~ 458 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVDET 458 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCCCC
Confidence 6889999999999999999999999999999998877766542 211 112222222 356888888775321 110
Q ss_pred HhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
-+ + ...+++..+++|+.-.+.. -.+.+..++.|...++
T Consensus 459 pl--~---~~~l~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~~~ 496 (529)
T PLN02520 459 PI--S---KHALKHYSLVFDAVYTPKI--TRLLREAEESGAIIVS 496 (529)
T ss_pred cc--c---HhhCCCCCEEEEeccCCCc--CHHHHHHHHCCCeEeC
Confidence 11 1 2346677888888654433 2455666666655543
No 320
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=97.14 E-value=0.0017 Score=57.79 Aligned_cols=79 Identities=22% Similarity=0.239 Sum_probs=53.0
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~ 148 (290)
+.+|+||| .|..|+.+.+.|..+.. ++.....+..+ . . .+.++.++++|++++|+|... ...+.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--~-----~---~~~~~~~~~~DvvFlalp~~~-s~~~~--- 67 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--D-----A---AARRELLNAADVAILCLPDDA-AREAV--- 67 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--c-----c---cCchhhhcCCCEEEECCCHHH-HHHHH---
Confidence 68999999 69999999999988763 44433332221 1 1 233456678999999998743 33333
Q ss_pred ccccccCCCCCEEEEecC
Q 022909 149 HGAASGMGPGKGYVDVST 166 (290)
Q Consensus 149 ~~~~~~~~~~~~lin~s~ 166 (290)
+ ...+.|..+||.|.
T Consensus 68 ~---~~~~~g~~VIDlSa 82 (313)
T PRK11863 68 A---LIDNPATRVIDAST 82 (313)
T ss_pred H---HHHhCCCEEEECCh
Confidence 1 12346889999984
No 321
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.13 E-value=0.002 Score=56.40 Aligned_cols=73 Identities=29% Similarity=0.393 Sum_probs=58.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHH----CCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLK----AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~----~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
++++.|||- ..+|+.++..|.. .+..|+.+..+. .++.+.+++||+||.+++.+. ++
T Consensus 157 Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG~p~----li 218 (286)
T PRK14184 157 GKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIGRPR----FV 218 (286)
T ss_pred CCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCC----cC
Confidence 899999994 7789999999998 678888877432 267788999999999997643 23
Q ss_pred cccccccccCCCCCEEEEecC
Q 022909 146 CGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~ 166 (290)
. .+++++|+++||++-
T Consensus 219 --~---~~~vk~GavVIDVGi 234 (286)
T PRK14184 219 --T---ADMVKPGAVVVDVGI 234 (286)
T ss_pred --C---HHHcCCCCEEEEeee
Confidence 1 245699999999963
No 322
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.13 E-value=0.012 Score=55.16 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=32.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
+++|.|+|.|.+|.++|+.|...|++|.++|.++.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 68999999999999999999999999999997654
No 323
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.13 E-value=0.0012 Score=59.46 Aligned_cols=88 Identities=16% Similarity=0.228 Sum_probs=51.9
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCe---EEEEeCCccchhhHHhCC--CccC-CCHHHHhhcCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCD---VTVWNRTKSKCDPLISLG--AKYQ-PSPDEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~---V~~~d~~~~~~~~~~~~g--~~~~-~~~~~~~~~aDivv~~~p~~~~~~~ 143 (290)
+++|+|+|+ |.+|+.+.+.|...+++ +.........-+.+...+ ..+. .+.++ ++++|++++++|. .....
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~-~~s~~ 81 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGA-AVSRS 81 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCH-HHHHH
Confidence 479999995 99999999999976653 333322211111111111 1111 12223 5789999999985 33344
Q ss_pred HhcccccccccCCCCCEEEEecC
Q 022909 144 VACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
+. + ...+.|..+||.|.
T Consensus 82 ~v---~---~~~~~G~~VIDlS~ 98 (336)
T PRK05671 82 FA---E---KARAAGCSVIDLSG 98 (336)
T ss_pred HH---H---HHHHCCCeEEECch
Confidence 43 1 12346888999974
No 324
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=97.12 E-value=0.0041 Score=57.80 Aligned_cols=123 Identities=23% Similarity=0.214 Sum_probs=72.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccch----hhHHhCCCccCC--CHHHHhhcCCeEEEEeC---ChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC----DPLISLGAKYQP--SPDEVAASCDVTFAMLA---DPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~----~~~~~~g~~~~~--~~~~~~~~aDivv~~~p---~~~~~ 141 (290)
+++|.|+|+|.-|.++++.|.+.|++|+++|.++... ......++.+.. ..++...++|+||..-- ..+.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~v 86 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPLV 86 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHHH
Confidence 7999999999999999999999999999999776551 111123433221 12245678999988622 11222
Q ss_pred HHHhcccc------cccccC-CCCCEE-EEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 142 MDVACGKH------GAASGM-GPGKGY-VDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 142 ~~~~~~~~------~~~~~~-~~~~~l-in~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
........ +++-.. .+..+| |-=|.|..-++.-+...|++.|....-+.++|
T Consensus 87 ~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG 146 (448)
T COG0771 87 EAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIG 146 (448)
T ss_pred HHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccC
Confidence 22211111 122222 233343 33345666666677777877776544444433
No 325
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.11 E-value=0.0022 Score=57.52 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=47.3
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC-------eEEEEeCCccc--hhh----HHhC------CCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSK--CDP----LISL------GAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~-------~V~~~d~~~~~--~~~----~~~~------g~~~~~~~~~~~~~aDi 130 (290)
.+||+|||+ |.+|..+|..+...|. ++.++|.++.. ++. +.+. .+....+..+.+++||+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 579999999 9999999999987765 79999985432 211 1110 12233455677899999
Q ss_pred EEEEeCC
Q 022909 131 TFAMLAD 137 (290)
Q Consensus 131 vv~~~p~ 137 (290)
||++.-.
T Consensus 82 vvitaG~ 88 (322)
T cd01338 82 ALLVGAK 88 (322)
T ss_pred EEEeCCC
Confidence 9998654
No 326
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=97.09 E-value=0.0019 Score=55.03 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=31.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..+|.|+|+|.+|..+++.|...|. +++++|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 7899999999999999999999997 788998764
No 327
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.09 E-value=0.0052 Score=58.24 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=31.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~ 104 (290)
+++|.|||.|.+|..+|+.|...|++|+++|+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 6899999999999999999999999999999764
No 328
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.08 E-value=0.0052 Score=52.67 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=71.0
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCC-CeE-EEEeCCccch-----hhHH---hCCCccCCCHHHHhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAG-CDV-TVWNRTKSKC-----DPLI---SLGAKYQPSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g-~~V-~~~d~~~~~~-----~~~~---~~g~~~~~~~~~~~~~aDivv~~~p~~~ 139 (290)
++||+|+|+ |+||+.+.+.+.... +++ -.+++.+... .++. ..++...+++.....++|++|=-. .|.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT-~P~ 80 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFT-TPE 80 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECC-Cch
Confidence 589999997 999999999998764 554 4677765422 1111 134555666777778899987554 445
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
.+...+ . +..-.+-..+|-++.-+....+.+.++.++ +..+-+|+|.
T Consensus 81 ~~~~~l--~---~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~NfS 127 (266)
T COG0289 81 ATLENL--E---FALEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAPNFS 127 (266)
T ss_pred hhHHHH--H---HHHHcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEeccch
Confidence 555554 1 111122345666655555555566655554 6666666653
No 329
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.08 E-value=0.0043 Score=55.63 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=47.3
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC-------eEEEEeCCc--cchhhHH----hC------CCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTK--SKCDPLI----SL------GAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~-------~V~~~d~~~--~~~~~~~----~~------g~~~~~~~~~~~~~aDi 130 (290)
..||+|||+ |.+|..+|..|...|. ++.++|.++ ++++..+ +. +.....+..+.+++||+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDv 82 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDA 82 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCE
Confidence 578999998 9999999999987774 799999964 2222111 10 12222355677899999
Q ss_pred EEEEeCC
Q 022909 131 TFAMLAD 137 (290)
Q Consensus 131 vv~~~p~ 137 (290)
||++.-.
T Consensus 83 VVitAG~ 89 (323)
T TIGR01759 83 ALLVGAF 89 (323)
T ss_pred EEEeCCC
Confidence 9998654
No 330
>PLN00106 malate dehydrogenase
Probab=97.08 E-value=0.0019 Score=57.82 Aligned_cols=67 Identities=9% Similarity=0.159 Sum_probs=47.7
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC--eEEEEeCCccchh--hHHhC----CCc---cCCCHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCD--PLISL----GAK---YQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~--~V~~~d~~~~~~~--~~~~~----g~~---~~~~~~~~~~~aDivv~~~p~ 137 (290)
..||+|||+ |++|..++..|...+. ++.++|+++.+.+ ++.+. .+. ..+++.+.++++|+||++.-.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 579999999 9999999999986664 8999998772221 11110 111 123456789999999998653
No 331
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.07 E-value=0.0022 Score=51.29 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=46.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCC-CccC-CC-HHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG-AKYQ-PS-PDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g-~~~~-~~-~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
+++|.|||.|.+|...++.|...|++|+++++. ..+++.+.+ +... .. .++-++++|+|+.++.. +++...+
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d-~e~N~~i 87 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQ-HAVNMMV 87 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhccCcEEEecccChhcCCCceEEEECCCC-HHHHHHH
Confidence 899999999999999999999999999999643 334443321 1110 01 11224667777776533 4444443
No 332
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.07 E-value=0.01 Score=55.70 Aligned_cols=65 Identities=25% Similarity=0.248 Sum_probs=47.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccch----hhHHhCCCccC--CCHHHHhhc-CCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC----DPLISLGAKYQ--PSPDEVAAS-CDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~----~~~~~~g~~~~--~~~~~~~~~-aDivv~~~ 135 (290)
+++|.|+|.|.+|.+.|+.|+..|++|.++|++.... +.+.+.|+... ....+++.. .|+||...
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 6899999999999999999999999999999865321 33444565432 233444454 89887754
No 333
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.06 E-value=0.0013 Score=58.46 Aligned_cols=65 Identities=12% Similarity=0.231 Sum_probs=46.2
Q ss_pred eEEEEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHH----h-C------CCccCCCHHHHhhcCCeEEEEeCC
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----S-L------GAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~----~-~------g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
||+|||+|.+|..+|..+...+. ++.++|.++++.+... . . .+....+..+.+++||+||++.-.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence 69999999999999999988775 7999999876543221 1 0 111111224668999999997653
No 334
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.06 E-value=0.0027 Score=56.49 Aligned_cols=99 Identities=17% Similarity=0.302 Sum_probs=60.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHhC-----CC---cc-CCCHHHH-hhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-----GA---KY-QPSPDEV-AASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~~-----g~---~~-~~~~~~~-~~~aDivv~~~p~~ 138 (290)
++||+|+|. |.-|..+.+.|..+. .++..+..+..+-+.+.+. |. .. ..+.+++ .++||+||+|+|..
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg 81 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHG 81 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCch
Confidence 589999995 999999999998874 4776666544232333331 11 11 1123333 44589999999975
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHH
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLIN 176 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~ 176 (290)
.. ..+. -..+.++..|||+|.---....+++
T Consensus 82 ~s-~~~v------~~l~~~g~~VIDLSadfR~~d~~~y 112 (349)
T COG0002 82 VS-AELV------PELLEAGCKVIDLSADFRLKDPEVY 112 (349)
T ss_pred hH-HHHH------HHHHhCCCeEEECCcccccCCHHHH
Confidence 44 3333 1223456679999865544433333
No 335
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.06 E-value=0.0024 Score=52.05 Aligned_cols=32 Identities=22% Similarity=0.463 Sum_probs=29.4
Q ss_pred eEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
+|+|||+|.+|..+++.|...|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999998 599999875
No 336
>PLN02477 glutamate dehydrogenase
Probab=97.04 E-value=0.0035 Score=57.83 Aligned_cols=107 Identities=19% Similarity=0.225 Sum_probs=66.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEE-EEeCC----------ccchhhHHh-C-------CCccCCCHHHH-hhcCCe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLIS-L-------GAKYQPSPDEV-AASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~-~~d~~----------~~~~~~~~~-~-------g~~~~~~~~~~-~~~aDi 130 (290)
+++|+|.|+|++|+.+|+.|...|.+|+ +.|.+ .+.+.+.++ . +.... +.+++ ..+|||
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~~Dv 284 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEPCDV 284 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceeccccE
Confidence 7999999999999999999999999988 66665 222212111 1 11222 22333 347999
Q ss_pred EEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 131 vv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++-|-- .+.| +++..+.++ -.+|+-.+++.. +.+-.+.|.++|+.++.
T Consensus 285 liP~Al-----~~~I--~~~na~~i~-ak~I~egAN~p~--t~ea~~~L~~rGI~~~P 332 (410)
T PLN02477 285 LIPAAL-----GGVI--NKENAADVK-AKFIVEAANHPT--DPEADEILRKKGVVVLP 332 (410)
T ss_pred Eeeccc-----cccC--CHhHHHHcC-CcEEEeCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 886642 3344 333344443 345565555555 34556888999988874
No 337
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.03 E-value=0.0029 Score=56.29 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=58.1
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCCC--eEEEEeCCccchh--hHHhC----CCcc--C-CCHHHHhhcCCeEEEEeCChh
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCD--PLISL----GAKY--Q-PSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g~--~V~~~d~~~~~~~--~~~~~----g~~~--~-~~~~~~~~~aDivv~~~p~~~ 139 (290)
+||+|||+ |++|..+|-.+...+. ++.++|++..+.+ .+.+. .+.. . +++.+.+++||+|+++.-.+.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 58999999 9999999999988774 7999998721111 12221 1221 1 233567899999999875431
Q ss_pred ---HHH-HHhccccc-------ccccCCCCCEEEEecC
Q 022909 140 ---SAM-DVACGKHG-------AASGMGPGKGYVDVST 166 (290)
Q Consensus 140 ---~~~-~~~~~~~~-------~~~~~~~~~~lin~s~ 166 (290)
+++ .++..|.+ .+....|++++|++|+
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN 118 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN 118 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 111 22211111 1222357889998855
No 338
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.03 E-value=0.0028 Score=54.93 Aligned_cols=74 Identities=24% Similarity=0.364 Sum_probs=60.0
Q ss_pred CCeEEEEcccH-hHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~-iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
++++.|||-++ +|+.++..|...++.|+++.... .++.+..+++|||+.++-.+ +++ .
T Consensus 156 Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~p----~~i--~- 214 (283)
T COG0190 156 GKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGKP----HFI--K- 214 (283)
T ss_pred CCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCCc----ccc--c-
Confidence 89999999765 69999999999999999987543 26677889999999999663 333 1
Q ss_pred cccccCCCCCEEEEecCC
Q 022909 150 GAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~ 167 (290)
.++.++|+++||++..
T Consensus 215 --~d~vk~gavVIDVGin 230 (283)
T COG0190 215 --ADMVKPGAVVIDVGIN 230 (283)
T ss_pred --cccccCCCEEEecCCc
Confidence 4678999999998643
No 339
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.02 E-value=0.0025 Score=56.76 Aligned_cols=94 Identities=16% Similarity=0.218 Sum_probs=57.5
Q ss_pred eEEEEcc-cHhHHHHHHHHHHCCC--eEEEEeCCccchhh--HHhC----CCcc-C-C-CHHHHhhcCCeEEEEeCChh-
Q 022909 73 RIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP--LISL----GAKY-Q-P-SPDEVAASCDVTFAMLADPE- 139 (290)
Q Consensus 73 ~IgiiG~-G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~--~~~~----g~~~-~-~-~~~~~~~~aDivv~~~p~~~- 139 (290)
||+|||+ |++|..+|-.|...+. ++.++|+++...+. +.+. .+.. . + ++.+.++++|+|+++...+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 6999999 9999999999987775 79999987622111 1110 1111 1 1 23578899999999875421
Q ss_pred --HH-HHHhccccc-------ccccCCCCCEEEEecC
Q 022909 140 --SA-MDVACGKHG-------AASGMGPGKGYVDVST 166 (290)
Q Consensus 140 --~~-~~~~~~~~~-------~~~~~~~~~~lin~s~ 166 (290)
.+ ..++..+.+ .+....|++++|++|+
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 11 111111111 1222357888888854
No 340
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.02 E-value=0.0044 Score=55.95 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=59.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccC-----CCHHHHhh---cCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQ-----PSPDEVAA---SCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-----~~~~~~~~---~aDivv~~~p~~~~~ 141 (290)
+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+++.|...+ .+..+..+ ..|+|+-++..+...
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~~ 249 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSSI 249 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHHH
Confidence 6899999999999999999999998 68899999888777777665322 12223222 257777666443222
Q ss_pred HHHhcccccccccCCCCCEEEEec
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
... ++.++++..++.++
T Consensus 250 ~~~-------~~~l~~~G~iv~~G 266 (343)
T PRK09880 250 NTC-------LEVTRAKGVMVQVG 266 (343)
T ss_pred HHH-------HHHhhcCCEEEEEc
Confidence 222 34566666666664
No 341
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=97.01 E-value=0.0032 Score=56.83 Aligned_cols=34 Identities=32% Similarity=0.533 Sum_probs=31.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..+|.|||+|.+|..++..|+..|. ++.++|.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 6899999999999999999999998 899999864
No 342
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=97.01 E-value=0.0022 Score=54.72 Aligned_cols=109 Identities=13% Similarity=0.123 Sum_probs=78.2
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC---CeEEEEeCCccchhhHHhC----------CCccCCCHHHHhhcCCeEEEEeCCh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG---CDVTVWNRTKSKCDPLISL----------GAKYQPSPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g---~~V~~~d~~~~~~~~~~~~----------g~~~~~~~~~~~~~aDivv~~~p~~ 138 (290)
.-..|+|.|..+-.+.....+.- .+|.+|+|+++....+++. .+..+.+++++++.+|||+.+++.+
T Consensus 139 ~vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atlst 218 (333)
T KOG3007|consen 139 CVLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLST 218 (333)
T ss_pred eEEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEeccccC
Confidence 56889999999998888766543 3899999999887776651 2345678999999999999988654
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 189 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~ 189 (290)
+.++ ..++++||+++=-+++-.+. ..+..+.+-+.+..|||.
T Consensus 219 ---ePil-----fgewlkpgthIdlVGsf~p~-mhEcDdelIq~a~vfVDs 260 (333)
T KOG3007|consen 219 ---EPIL-----FGEWLKPGTHIDLVGSFKPV-MHECDDELIQSACVFVDS 260 (333)
T ss_pred ---Ccee-----eeeeecCCceEeeeccCCch-HHHHhHHHhhhheEEEec
Confidence 4555 25789999886555554554 445555555556677774
No 343
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.00 E-value=0.0035 Score=54.28 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=38.9
Q ss_pred CCCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh
Q 022909 70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 70 ~~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~ 112 (290)
+++++.|-|+ +.||..+|+.|++.|++|++..|+.++.+++++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~ 48 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAK 48 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHH
Confidence 3689999995 999999999999999999999999998887765
No 344
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.99 E-value=0.0043 Score=53.44 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=62.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh--------CCCccCCCHHHHhh--cCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LGAKYQPSPDEVAA--SCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~aDivv~~~p~~~ 139 (290)
..+|+|||+|.+|..+++.|+..|. +++++|.+.-....+.. .|...+....+.++ ..++-+.+.+..-
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i 111 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARL 111 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 7999999999999999999999997 78899876433222211 12222222222222 2334333333211
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCcc
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV 191 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~ 191 (290)
.... + .+.++.-.++|+++. .......+.+...+.++.++.+.+
T Consensus 112 ~~~~-~------~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~ip~v~~~~ 155 (245)
T PRK05690 112 DDDE-L------AALIAGHDLVLDCTD-NVATRNQLNRACFAAKKPLVSGAA 155 (245)
T ss_pred CHHH-H------HHHHhcCCEEEecCC-CHHHHHHHHHHHHHhCCEEEEeee
Confidence 1111 1 112334457777743 344444566667777787776543
No 345
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.99 E-value=0.0017 Score=47.46 Aligned_cols=73 Identities=22% Similarity=0.247 Sum_probs=51.9
Q ss_pred CCeEEEEcccHhHHHHHHHHH-HCCCe-EEEEeCCccchhhHHhCCCccCCCHHHHhhc--CCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLL-KAGCD-VTVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~-~~g~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivv~~~p~~~~~~~~~ 145 (290)
..+++|+|+|+.|++++.... ..|+. +.++|.++++.... -.|+....+++++.+. .|+-++++|... .....
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~-i~gipV~~~~~~l~~~~~i~iaii~VP~~~-a~~~~ 79 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKE-IGGIPVYGSMDELEEFIEIDIAIITVPAEA-AQEVA 79 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSE-ETTEEEESSHHHHHHHCTTSEEEEES-HHH-HHHHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcE-ECCEEeeccHHHhhhhhCCCEEEEEcCHHH-HHHHH
Confidence 578999999999999985443 45765 46888888765321 1356666688888777 999999998643 44444
No 346
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.98 E-value=0.0067 Score=57.44 Aligned_cols=64 Identities=23% Similarity=0.344 Sum_probs=48.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhH-HhCCCccCC--CHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-ISLGAKYQP--SPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~-~~~g~~~~~--~~~~~~~~aDivv~~ 134 (290)
+++|.|+|+|..|.++++.|...|++|.++|++.....++ .+.|+.... ...+.+.++|+||..
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTS 81 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeC
Confidence 6889999999999999999999999999999876544332 334665432 233456788988875
No 347
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.98 E-value=0.0086 Score=46.50 Aligned_cols=111 Identities=19% Similarity=0.220 Sum_probs=63.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh--------CCCccCCCHHHHh----hcCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LGAKYQPSPDEVA----ASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~----~~aDivv~~~p~ 137 (290)
.+||.|+|+|.+|..+++.|...|. +++++|.+.=....+.. .|...+.-+.+.+ ...++.....+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~ 81 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI 81 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence 5899999999999999999999998 79999986432222211 1222221222222 234444333322
Q ss_pred h-hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccC
Q 022909 138 P-ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192 (290)
Q Consensus 138 ~-~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~ 192 (290)
+ ...... + ++-.++|++. ........+.+.+.+.++.++...+.
T Consensus 82 ~~~~~~~~-------~---~~~d~vi~~~-d~~~~~~~l~~~~~~~~~p~i~~~~~ 126 (135)
T PF00899_consen 82 DEENIEEL-------L---KDYDIVIDCV-DSLAARLLLNEICREYGIPFIDAGVN 126 (135)
T ss_dssp SHHHHHHH-------H---HTSSEEEEES-SSHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred cccccccc-------c---cCCCEEEEec-CCHHHHHHHHHHHHHcCCCEEEEEee
Confidence 1 112222 2 2335777763 34555667788888888888876544
No 348
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=96.97 E-value=0.0048 Score=54.04 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=38.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCccchhhHHhCCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGAK 116 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~ 116 (290)
+.+|.|+|.|.+|...++.++..|.+ |++.++++++.+.+++.|..
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT 167 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 67999999999999999999999986 88888888777666666653
No 349
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.97 E-value=0.00067 Score=61.95 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=30.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 103 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~ 103 (290)
..+|.|||+|.+|..+++.|...|. +++++|.+
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 7899999999999999999999997 88999876
No 350
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.96 E-value=0.0026 Score=53.55 Aligned_cols=33 Identities=21% Similarity=0.493 Sum_probs=30.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 103 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~ 103 (290)
..+|+|||+|.+|..+++.|...|. +++++|.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 6899999999999999999999998 59999987
No 351
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.94 E-value=0.002 Score=54.79 Aligned_cols=64 Identities=28% Similarity=0.345 Sum_probs=50.6
Q ss_pred EEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccc--hhhHHhCCCcc-------CCCHHHHhhcCCeEEEEeCC
Q 022909 74 IGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISLGAKY-------QPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 74 IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~--~~~~~~~g~~~-------~~~~~~~~~~aDivv~~~p~ 137 (290)
|.|+|. |.+|+.+++.|...+++|.+..|++.+ .+.+.+.|+.. .+++.++++++|.|++++|.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 689995 999999999999999999999998743 34455555542 23566678999999999984
No 352
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.94 E-value=0.0051 Score=55.77 Aligned_cols=88 Identities=30% Similarity=0.360 Sum_probs=58.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeC---CccchhhHHhCCCccCCC----HHH--HhhcCCeEEEEeCChhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNR---TKSKCDPLISLGAKYQPS----PDE--VAASCDVTFAMLADPESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~---~~~~~~~~~~~g~~~~~~----~~~--~~~~aDivv~~~p~~~~~ 141 (290)
+.+|.|+|+|.+|...++.++..|.+|+++++ ++++.+.+++.|+..... ..+ .....|+|+-++..+...
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 252 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPPLA 252 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHHHH
Confidence 68999999999999999999999999999998 455656555666543321 111 122467777777543322
Q ss_pred HHHhcccccccccCCCCCEEEEec
Q 022909 142 MDVACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~lin~s 165 (290)
.. .++.++++..++.++
T Consensus 253 ~~-------~~~~l~~~G~~v~~G 269 (355)
T cd08230 253 FE-------ALPALAPNGVVILFG 269 (355)
T ss_pred HH-------HHHHccCCcEEEEEe
Confidence 22 245566766666554
No 353
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.93 E-value=0.0081 Score=56.35 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=51.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--CCccC----CCHHH----HhhcCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKYQ----PSPDE----VAASCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--g~~~~----~~~~~----~~~~aDivv~~~p~~ 138 (290)
.++|.|+|+|.+|+.+++.|...|++|+++|+++++.+.+.+. +.... .+.+. -++++|.|+++++.+
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 5889999999999999999999999999999999887776653 33211 22222 235789998887654
No 354
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.92 E-value=0.005 Score=52.83 Aligned_cols=115 Identities=15% Similarity=0.192 Sum_probs=65.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh--------CCCccCCCHHHHhh--cCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LGAKYQPSPDEVAA--SCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~aDivv~~~p~~~ 139 (290)
..+|.|+|+|.+|..+++.|...|. +++++|.+.-....+.. .|...+....+.++ ..++-+.+.+..-
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i 103 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKL 103 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccC
Confidence 6899999999999999999999997 78899886433222211 12111211222222 2344444443211
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
.... + .+.++.-.++|+++ ........+.+...+.++.++.....+
T Consensus 104 ~~~~-~------~~~~~~~DlVvd~~-D~~~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 104 DDAE-L------AALIAEHDIVVDCT-DNVEVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred CHHH-H------HHHhhcCCEEEEcC-CCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 1111 1 12234455777774 334445567777777888887754443
No 355
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.91 E-value=0.12 Score=46.98 Aligned_cols=202 Identities=14% Similarity=0.150 Sum_probs=115.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh----C-----------------CC----ccCCCHHHHh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS----L-----------------GA----KYQPSPDEVA 125 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~----~-----------------g~----~~~~~~~~~~ 125 (290)
.+|.|+|+|..+-.+|..+...+. +|-+++|...+.+.+.+ . |- ....+.+++.
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~ 81 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIE 81 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhc
Confidence 579999999999999999997764 79999997665544432 1 10 1235677777
Q ss_pred hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecC--CChhHHHHHHHHHHHcCCcEEe-CccCC------CCc
Q 022909 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST--VDGDTSKLINGHIKATGASFLE-APVSG------SKK 196 (290)
Q Consensus 126 ~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~--~~~~~~~~l~~~l~~~~~~~~~-~p~~~------~~~ 196 (290)
.+=|.+|+|||. ++...++.. =-.+.++.=+.+|-+|. |+....+.+...+.. .+.+++ ...++ ++.
T Consensus 82 g~WdtlILavta-DAY~~VL~q--l~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~-~~EVISFStY~gdTr~~d~~~ 157 (429)
T PF10100_consen 82 GEWDTLILAVTA-DAYLDVLQQ--LPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGP-DAEVISFSTYYGDTRWSDGEQ 157 (429)
T ss_pred ccccEEEEEech-HHHHHHHHh--cCHHHHhhCCEEEEECcccchHHHHHHHHHhcCC-CceEEEeecccccceeccCCC
Confidence 788999999987 555566521 01122333334444443 333333333332221 233333 11111 111
Q ss_pred c------ccCCceEEEec-CCHHHHHHHHHHHHHhCCcEEEeCCcchHHH-----------------HHHHH--------
Q 022909 197 P------AEDGQLIFLAA-GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAA-----------------MKLVV-------- 244 (290)
Q Consensus 197 ~------~~~~~~~~~~~-~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~-----------------~k~~~-------- 244 (290)
. +.+..+.+-.. ++...++++..+++.+|..+..++.+-.|+. ++.+.
T Consensus 158 ~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~kY 237 (429)
T PF10100_consen 158 PNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPKY 237 (429)
T ss_pred cceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcce
Confidence 1 11122221111 2346788999999999988777654333322 11110
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhh
Q 022909 245 ------------NMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQS 277 (290)
Q Consensus 245 ------------n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~ 277 (290)
..++.+...+.|.+.+..+.|++.=.+.+++.+
T Consensus 238 vYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~d 282 (429)
T PF10100_consen 238 VYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMND 282 (429)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhcc
Confidence 222333377889999999999998777777654
No 356
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.88 E-value=0.0049 Score=56.00 Aligned_cols=89 Identities=22% Similarity=0.296 Sum_probs=62.3
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh-CCCccCCCH-H--------HHh--hcCCeEEEEeCCh
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS-LGAKYQPSP-D--------EVA--ASCDVTFAMLADP 138 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~-~g~~~~~~~-~--------~~~--~~aDivv~~~p~~ 138 (290)
.++.|+|+|.||...+..++..|. +|++.|+++++++.+++ .+.....+. + ++. ..+|+++.|+...
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~ 249 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSP 249 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCH
Confidence 389999999999999998888985 78888999999887777 444322221 1 112 2489999998743
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
..... .++..+++..++.++-.
T Consensus 250 ~~~~~-------ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 250 PALDQ-------ALEALRPGGTVVVVGVY 271 (350)
T ss_pred HHHHH-------HHHHhcCCCEEEEEecc
Confidence 32222 35667788777777544
No 357
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.84 E-value=0.0042 Score=54.41 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=45.8
Q ss_pred eEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH----HhCCCccCCCHHHHh------hc-CCeEEEEeCC
Q 022909 73 RIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL----ISLGAKYQPSPDEVA------AS-CDVTFAMLAD 137 (290)
Q Consensus 73 ~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~----~~~g~~~~~~~~~~~------~~-aDivv~~~p~ 137 (290)
+|.|+|. |.+|+.+++.|...|++|.+..|++++.... ......-.+++.+++ +. +|.|+++.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 4789986 9999999999999999999999998654211 001111223455566 45 8999888764
No 358
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.83 E-value=0.022 Score=47.76 Aligned_cols=73 Identities=25% Similarity=0.260 Sum_probs=51.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCc-cchhhHHhC-CCcc---CCCHHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK-SKCDPLISL-GAKY---QPSPDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~-~~~~~~~~~-g~~~---~~~~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
+++|.|||.|.+|..=++.|...|.+|+++.+.. +....+.+. ++.. .-+.++ +..+++|+.+++.+...+.+
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~ln~~i 89 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEELNERI 89 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHHHHHHH
Confidence 8999999999999999999999999999999876 223333332 2111 123333 44599999998765443333
No 359
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.82 E-value=0.0036 Score=59.06 Aligned_cols=114 Identities=23% Similarity=0.235 Sum_probs=68.6
Q ss_pred CCeEEEEcccHhHHH-HHHHHHHCCCeEEEEeCCccc-hhhHHhCCCccC-CCHHHHhhcCCeEEEEeC--C-hhHHHHH
Q 022909 71 PGRIGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQ-PSPDEVAASCDVTFAMLA--D-PESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~-la~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~-~~~~~~~~~aDivv~~~p--~-~~~~~~~ 144 (290)
+++|.|+|.|..|.+ +|+.|...|++|.++|.++.. .+.+.+.|+... ....+.+.++|+||+.-. . .+..+..
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a 86 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVAA 86 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHH
Confidence 689999999999999 799999999999999976532 234555566543 223345678998887532 2 2223221
Q ss_pred hc------cccccccc-CCCCCEE-EEecCCChhHHHHHHHHHHHcCC
Q 022909 145 AC------GKHGAASG-MGPGKGY-VDVSTVDGDTSKLINGHIKATGA 184 (290)
Q Consensus 145 ~~------~~~~~~~~-~~~~~~l-in~s~~~~~~~~~l~~~l~~~~~ 184 (290)
.. ...+++.. +++..++ |-=|.|...++.-+...|+..|.
T Consensus 87 ~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 87 RELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred HHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 10 11122222 2333343 33335556666666677776653
No 360
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=96.82 E-value=0.0045 Score=54.95 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=44.5
Q ss_pred EEcccHhHHHHHHHHHHCCC--eEEEEeCCccchhhHHh----------CCCccCCCHHHHhhcCCeEEEEeCC
Q 022909 76 FLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS----------LGAKYQPSPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 76 iiG~G~iG~~la~~l~~~g~--~V~~~d~~~~~~~~~~~----------~g~~~~~~~~~~~~~aDivv~~~p~ 137 (290)
|||+|.+|..+|..+...+. ++.++|++.++.+..+. .......+..+.+++||+||++.-.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~ 74 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGA 74 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCC
Confidence 68999999999999988775 79999998765433221 0122223345678999999997653
No 361
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.81 E-value=0.013 Score=51.74 Aligned_cols=109 Identities=10% Similarity=0.037 Sum_probs=71.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHH---HHHhc-
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA---MDVAC- 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~---~~~~~- 146 (290)
+++++|||--.==..+++.|...|++|.++.-.... ..+ .|+....+.++.++++|+|++.+|.+.+- +..+.
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~ 77 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-DGF--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSN 77 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-ccc--ccceeecchhhhhccCCEEEECCccccCCceEeccccc
Confidence 378999999888899999999999999988753210 111 24666667777799999999999954331 11110
Q ss_pred ----ccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEE
Q 022909 147 ----GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187 (290)
Q Consensus 147 ----~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~ 187 (290)
-+++.++.++++.++ -++. +...+.+..+++++.+.
T Consensus 78 ~~~~l~~~~l~~~~~~~~~-~~G~----~~~~l~~~a~~~gi~v~ 117 (287)
T TIGR02853 78 EKVVLTPELLESTKGHCTI-YVGI----SNPYLEQLAADAGVKLI 117 (287)
T ss_pred CCccccHHHHHhcCCCCEE-EEec----CCHHHHHHHHHCCCeEE
Confidence 024556777776553 2222 22344456777888777
No 362
>PRK05884 short chain dehydrogenase; Provisional
Probab=96.80 E-value=0.012 Score=49.65 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=33.9
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
||+.|.|. |.||+++++.|...|++|.+.+|++++.+...
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~ 41 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAA 41 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36888885 99999999999999999999999877665443
No 363
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.79 E-value=0.0018 Score=52.43 Aligned_cols=68 Identities=10% Similarity=0.211 Sum_probs=47.3
Q ss_pred CCeEEEEcccHhHHHHHHHH--HHCCCeE-EEEeCCccchhhHHh-CCCccCCCHHHHhh--cCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNL--LKAGCDV-TVWNRTKSKCDPLIS-LGAKYQPSPDEVAA--SCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l--~~~g~~V-~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~--~aDivv~~~p~~ 138 (290)
..++.|||+|++|++++..- ...|+++ .++|.+++....... ..+.-.+++++.++ +.|+.++|+|..
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~ 157 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAE 157 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHH
Confidence 46899999999999999873 3567875 488998875432211 12333456667776 578889998863
No 364
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.78 E-value=0.0079 Score=53.48 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=52.6
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCC--e-EE--EEeCCccch-hhHHhCCCccCC--CHHHHhhcCCeEEEEeCChhHHH
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGC--D-VT--VWNRTKSKC-DPLISLGAKYQP--SPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~--~-V~--~~d~~~~~~-~~~~~~g~~~~~--~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
++|||+| .|.+|+.+.++|..... + +. ...|+..+. ..+....+..-+ .-....+++|+++.+.+.... +
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s-~ 80 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVS-K 80 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHH-H
Confidence 7899998 59999999999998543 2 33 333443322 222222122221 112235689999999876433 4
Q ss_pred HHhcccccccccCCCCCEEEEecC
Q 022909 143 DVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.+. -...+.|.++||.++
T Consensus 81 ~~~------p~~~~~G~~VIdnsS 98 (334)
T COG0136 81 EVE------PKAAEAGCVVIDNSS 98 (334)
T ss_pred HHH------HHHHHcCCEEEeCCc
Confidence 443 233456788888875
No 365
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.77 E-value=0.0042 Score=57.70 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=65.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEE-Ee----------CCccchh---hHHh------------CCCccCCCHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTV-WN----------RTKSKCD---PLIS------------LGAKYQPSPDEV 124 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~-~d----------~~~~~~~---~~~~------------~g~~~~~~~~~~ 124 (290)
++||.|.|+|++|...|+.|...|.+|++ .| .+.++.. +.++ .+.... +.+++
T Consensus 228 g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~d~~ 306 (444)
T PRK14031 228 GKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EGARP 306 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CCccc
Confidence 89999999999999999999999999987 44 1111111 0100 122322 33444
Q ss_pred h-hcCCeEEEEeCChhHHHHHhcccccccccCCC-CCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 125 A-ASCDVTFAMLADPESAMDVACGKHGAASGMGP-GKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 125 ~-~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~-~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+ .+|||++-|.- .+.| +++..+.++. +..+|-.+...|.+.+ -.+.|.++++.++.
T Consensus 307 ~~~~cDIliPaAl-----~n~I--~~~na~~l~a~g~~~V~EgAN~P~t~e-A~~~L~~rgI~~~P 364 (444)
T PRK14031 307 WGEKGDIALPSAT-----QNEL--NGDDARQLVANGVIAVSEGANMPSTPE-AIKVFQDAKILYAP 364 (444)
T ss_pred ccCCCcEEeeccc-----cccc--CHHHHHHHHhcCCeEEECCCCCCCCHH-HHHHHHHCCcEEeC
Confidence 3 46999875543 3334 3333444443 4445555544465554 44677788887764
No 366
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.77 E-value=0.0025 Score=57.32 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=54.1
Q ss_pred CCCeEEEEcc-cHhHHHHHHHHHHCCC---eEEEEeCCccchhh--HHhCCCccCCCHHHH-hhcCCeEEEEeCChhHHH
Q 022909 70 LPGRIGFLGM-GIMGTPMAQNLLKAGC---DVTVWNRTKSKCDP--LISLGAKYQPSPDEV-AASCDVTFAMLADPESAM 142 (290)
Q Consensus 70 ~~~~IgiiG~-G~iG~~la~~l~~~g~---~V~~~d~~~~~~~~--~~~~g~~~~~~~~~~-~~~aDivv~~~p~~~~~~ 142 (290)
++++|+|||+ |.+|+.+.+.|....+ ++.........-+. +....+.+. ++++. +.++|++++++|.. ...
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~-~s~ 80 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGRE-ASA 80 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHH-HHH
Confidence 3789999995 9999999999998433 55544332211111 111112222 34443 26899999999764 333
Q ss_pred HHhcccccccccCCCCCEEEEecC
Q 022909 143 DVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.+. + ...+.|..+||.|.
T Consensus 81 ~~~---~---~~~~~g~~VIDlS~ 98 (336)
T PRK08040 81 AYA---E---EATNAGCLVIDSSG 98 (336)
T ss_pred HHH---H---HHHHCCCEEEECCh
Confidence 433 1 12356889999984
No 367
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.77 E-value=0.0043 Score=56.35 Aligned_cols=88 Identities=18% Similarity=0.290 Sum_probs=53.5
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCC-CeEEEEeCCccchh-hHHh---C-----------CCcc-CCCHHHHhhcCCeEE
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKSKCD-PLIS---L-----------GAKY-QPSPDEVAASCDVTF 132 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~-~~~~---~-----------g~~~-~~~~~~~~~~aDivv 132 (290)
++||+|+| .|.+|+.+.+.|..+. +++..+.+++.+.. .+.. . .+.+ ..+.+ .+.++|+|+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~DvVf 81 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPE-AVDDVDIVF 81 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHH-HhcCCCEEE
Confidence 58999998 8999999999998765 47777644432221 1110 0 0111 12334 347899999
Q ss_pred EEeCChhHHHHHhcccccccccCCCCCEEEEecC
Q 022909 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 133 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.++|.... ..+. + ...+.|..+|+.|.
T Consensus 82 ~a~p~~~s-~~~~---~---~~~~~G~~vIDls~ 108 (349)
T PRK08664 82 SALPSDVA-GEVE---E---EFAKAGKPVFSNAS 108 (349)
T ss_pred EeCChhHH-HHHH---H---HHHHCCCEEEECCc
Confidence 99987433 3332 1 11235777888764
No 368
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.75 E-value=0.014 Score=52.53 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=46.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCC-------CeEEEEeCCccc--hhh----HHh------CCCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAG-------CDVTVWNRTKSK--CDP----LIS------LGAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g-------~~V~~~d~~~~~--~~~----~~~------~g~~~~~~~~~~~~~aDi 130 (290)
..||+|+|+ |.+|+.++..|...+ .+|.++|+++.. .+. +.+ ..+....++.+.++++|+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 478999998 999999999998744 489999996532 211 110 012223566688899999
Q ss_pred EEEEeCC
Q 022909 131 TFAMLAD 137 (290)
Q Consensus 131 vv~~~p~ 137 (290)
||.+.-.
T Consensus 82 VI~tAG~ 88 (325)
T cd01336 82 AILVGAM 88 (325)
T ss_pred EEEeCCc
Confidence 9987643
No 369
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.73 E-value=0.008 Score=54.76 Aligned_cols=107 Identities=19% Similarity=0.277 Sum_probs=68.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc------------------chhhHHh-CCCccCCCHHHHhh-cCCe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS------------------KCDPLIS-LGAKYQPSPDEVAA-SCDV 130 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~------------------~~~~~~~-~g~~~~~~~~~~~~-~aDi 130 (290)
++||+|=|+|++|+..|+.+...|.+|++++-+.. +.....+ .+.+..+. ++++. +|||
T Consensus 207 G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~~cDI 285 (411)
T COG0334 207 GARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEVDCDI 285 (411)
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-cccccccCcE
Confidence 89999999999999999999999999988876655 2222222 24444433 45544 6998
Q ss_pred EEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 131 vv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
.+-|. +.+.| +.+..+.++.. +++--++++. +. +..+.+.++|+-|+.
T Consensus 286 l~PcA-----~~n~I--~~~na~~l~ak-~V~EgAN~P~-t~-eA~~i~~erGIl~~P 333 (411)
T COG0334 286 LIPCA-----LENVI--TEDNADQLKAK-IVVEGANGPT-TP-EADEILLERGILVVP 333 (411)
T ss_pred Ecccc-----ccccc--chhhHHHhhhc-EEEeccCCCC-CH-HHHHHHHHCCCEEcC
Confidence 86443 44555 34445566555 4554444443 33 334555577877654
No 370
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.71 E-value=0.013 Score=54.99 Aligned_cols=116 Identities=15% Similarity=0.095 Sum_probs=67.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc--hhhHHh--CCCccCC--CHHHHhhcCCeEEEEe--CC-hhHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLIS--LGAKYQP--SPDEVAASCDVTFAML--AD-PESA 141 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~--~~~~~~--~g~~~~~--~~~~~~~~aDivv~~~--p~-~~~~ 141 (290)
.-+|.|+|.|..|.++|+.|...|++|.++|..+.. .+.+.+ .|+.... ...+.+.++|+||..- |. .+..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~ 85 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL 85 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence 578999999999999999999999999999976432 223443 2554421 2234567899887753 22 2222
Q ss_pred HHHhcc------cccccccCCCCCEE-EEecCCChhHHHHHHHHHHHcCCcE
Q 022909 142 MDVACG------KHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGASF 186 (290)
Q Consensus 142 ~~~~~~------~~~~~~~~~~~~~l-in~s~~~~~~~~~l~~~l~~~~~~~ 186 (290)
...... ..+++..+.+..+| |-=|.|...+..-+...|+..+..+
T Consensus 86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~ 137 (448)
T PRK03803 86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRV 137 (448)
T ss_pred HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCe
Confidence 221100 01222222233343 3333455555666666776655433
No 371
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=96.70 E-value=0.0066 Score=56.49 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=49.3
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHC-------CC--eEEEEeCCccchhhHHh----------CCCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKA-------GC--DVTVWNRTKSKCDPLIS----------LGAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~-------g~--~V~~~d~~~~~~~~~~~----------~g~~~~~~~~~~~~~aDi 130 (290)
.-||+|||+ |++|..+|-.|... +. ++.++|++.++.+..+- ..+....+..+.+++||+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 468999999 99999999999876 54 78899998877543221 022222345577899999
Q ss_pred EEEEeCC
Q 022909 131 TFAMLAD 137 (290)
Q Consensus 131 vv~~~p~ 137 (290)
||++...
T Consensus 180 VVitAG~ 186 (444)
T PLN00112 180 ALLIGAK 186 (444)
T ss_pred EEECCCC
Confidence 9998654
No 372
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.70 E-value=0.01 Score=47.47 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=50.2
Q ss_pred CCeEEEEcc--cHhHHHHHHHHHHCCCeEEEEeCCccc--h--hhH-------HhCC--CccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGM--GIMGTPMAQNLLKAGCDVTVWNRTKSK--C--DPL-------ISLG--AKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~--G~iG~~la~~l~~~g~~V~~~d~~~~~--~--~~~-------~~~g--~~~~~~~~~~~~~aDivv~~~ 135 (290)
++||++||- +++..+++..+..+|+++.++.+..-. . +.+ .+.| +..++++++.++++|+|..-.
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~~ 81 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTDR 81 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEES
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEcC
Confidence 689999993 899999999999999999998876521 1 111 1123 456789999999999998765
Q ss_pred CC
Q 022909 136 AD 137 (290)
Q Consensus 136 p~ 137 (290)
-.
T Consensus 82 ~~ 83 (158)
T PF00185_consen 82 WQ 83 (158)
T ss_dssp SS
T ss_pred cc
Confidence 33
No 373
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=96.69 E-value=0.0074 Score=53.46 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=52.1
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
.||+|+| .|..|..+.+.|..+. .++.....+.. .. ..+.+++++++|++++++|.. ....+. +
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~-~~~~~~~~~~~D~vFlalp~~-~s~~~~---~ 67 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KD-AAERAKLLNAADVAILCLPDD-AAREAV---S 67 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cC-cCCHhHhhcCCCEEEECCCHH-HHHHHH---H
Confidence 4799999 5999999999999874 35443322211 11 124567778999999999874 334443 1
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
.....|..+||.|.
T Consensus 68 ---~~~~~g~~VIDlSa 81 (310)
T TIGR01851 68 ---LVDNPNTCIIDAST 81 (310)
T ss_pred ---HHHhCCCEEEECCh
Confidence 12346889999983
No 374
>PRK05993 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.0035 Score=54.74 Aligned_cols=44 Identities=20% Similarity=0.161 Sum_probs=37.7
Q ss_pred CCCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC
Q 022909 70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL 113 (290)
Q Consensus 70 ~~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~ 113 (290)
|+++|.|.|. |.||+.+++.|...|++|++.+|++++.+.+.+.
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~ 47 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAE 47 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
Confidence 4688999996 9999999999999999999999998776655443
No 375
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.69 E-value=0.0047 Score=54.29 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=27.3
Q ss_pred eEEEEcccHhHHHHHHHHHHCCC-eEEEEeCC
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 103 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~ 103 (290)
||.|+|+|.+|..+|+.|...|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 58999999999999999999997 67777753
No 376
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.69 E-value=0.0042 Score=55.61 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=45.4
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCC--CeEEEEeCCccchh--hHHhC----CCccCC---CHHHHhhcCCeEEEEeCC
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAG--CDVTVWNRTKSKCD--PLISL----GAKYQP---SPDEVAASCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g--~~V~~~d~~~~~~~--~~~~~----g~~~~~---~~~~~~~~aDivv~~~p~ 137 (290)
++||+|||+ |++|..++..+...+ .++.++|+.....+ ++.+. .+...+ +..+.++++|+|+++.-.
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~ 86 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGV 86 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCC
Confidence 579999999 999999999998555 58999998432221 11110 111121 225788999999988754
No 377
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.68 E-value=0.0052 Score=55.90 Aligned_cols=34 Identities=24% Similarity=0.497 Sum_probs=31.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..+|.|||+|.+|..+++.|+..|. ++.++|.+.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 7899999999999999999999997 788998764
No 378
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.68 E-value=0.016 Score=48.26 Aligned_cols=116 Identities=15% Similarity=0.219 Sum_probs=64.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHh----------CCCccCCCHHHHhh--cCCeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS----------LGAKYQPSPDEVAA--SCDVTFAMLAD 137 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~----------~g~~~~~~~~~~~~--~aDivv~~~p~ 137 (290)
..+|.|||+|.+|..+++.|...|. +++++|.+.-....+.. .|...+....+.++ ..|+-+.....
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~ 98 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEE 98 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence 7899999999999999999999997 68999876322111111 11111111111121 24444444432
Q ss_pred hhH-HHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 138 PES-AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 138 ~~~-~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
... ..... .+. +++-.++|++ .........+.+..++.++.++.+...+
T Consensus 99 ~~~~~~~~~---~~~---~~~~dvVi~~-~d~~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 99 DSLSNDSNI---EEY---LQKFTLVIAT-EENYERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred ccccchhhH---HHH---HhCCCEEEEC-CCCHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 211 01110 111 2333466766 4445555667788888888887765443
No 379
>PRK07411 hypothetical protein; Validated
Probab=96.67 E-value=0.0021 Score=59.22 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=30.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 103 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~ 103 (290)
..+|.|||+|.+|..+++.|...|. +++++|.+
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 6899999999999999999999997 78888875
No 380
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=96.66 E-value=0.0026 Score=57.45 Aligned_cols=87 Identities=14% Similarity=0.189 Sum_probs=53.0
Q ss_pred eEEEEc-ccHhHHHHHHHHHHCCCeE---EEEeCCccchhhHHhCCC--ccCCCHHHHhhcCCeEEEEeCChhHHHHHhc
Q 022909 73 RIGFLG-MGIMGTPMAQNLLKAGCDV---TVWNRTKSKCDPLISLGA--KYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 73 ~IgiiG-~G~iG~~la~~l~~~g~~V---~~~d~~~~~~~~~~~~g~--~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~ 146 (290)
+|+|+| .|.+|+.+.+.|...++++ ....+.....+.+...+. ...+-..+.++++|+|+.++|.. ......
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a- 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFA- 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHH-
Confidence 589999 6999999999999977753 333343322222222221 11111123458899999999764 444443
Q ss_pred ccccccccCCCCCEEEEecC
Q 022909 147 GKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s~ 166 (290)
...++.|..+||.|.
T Consensus 79 -----~~~~~~G~~VID~ss 93 (339)
T TIGR01296 79 -----PKAAKCGAIVIDNTS 93 (339)
T ss_pred -----HHHHHCCCEEEECCH
Confidence 122456788998874
No 381
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.63 E-value=0.013 Score=53.78 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=31.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..+|.|+|+|.+|..++..|+..|. +++++|++.
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 6899999999999999999999998 799999873
No 382
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.62 E-value=0.0069 Score=53.27 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=33.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
+++|||+|+|.+|..-.+..+++|++|++.|++..+.++
T Consensus 182 G~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkee 220 (360)
T KOG0023|consen 182 GKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEE 220 (360)
T ss_pred CcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHH
Confidence 799999999999998888888999999999998754443
No 383
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=96.61 E-value=0.0062 Score=54.64 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=44.3
Q ss_pred eEEEEcc-cHhHHHHHHHHHHCCC-------eEEEEeCCccc--hhh----HHh------CCCccCCCHHHHhhcCCeEE
Q 022909 73 RIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSK--CDP----LIS------LGAKYQPSPDEVAASCDVTF 132 (290)
Q Consensus 73 ~IgiiG~-G~iG~~la~~l~~~g~-------~V~~~d~~~~~--~~~----~~~------~g~~~~~~~~~~~~~aDivv 132 (290)
+|+|||+ |++|..++..|...+. ++.++|+++.. .+. +.+ .++....+..+.+++||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5999999 9999999999987553 59999986542 111 111 01111224457789999999
Q ss_pred EEeCC
Q 022909 133 AMLAD 137 (290)
Q Consensus 133 ~~~p~ 137 (290)
++.-.
T Consensus 81 itAG~ 85 (324)
T TIGR01758 81 LVGAF 85 (324)
T ss_pred EcCCC
Confidence 87654
No 384
>PRK08328 hypothetical protein; Provisional
Probab=96.58 E-value=0.021 Score=48.71 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=66.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhC--------CCc-cCCCHHHHhh--cCCeEEEEeCCh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAK-YQPSPDEVAA--SCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~-~~~~~~~~~~--~aDivv~~~p~~ 138 (290)
..+|.|+|+|.+|..+++.|+..|. +++++|.+.-....+... |.. ......+.++ +.|+.+.+.+..
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~ 106 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGR 106 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 7899999999999999999999997 788998765433332211 110 0000011111 467766665432
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
-.... + .+.+++-.++|++.-. ......+.+...+.++.++...+.+
T Consensus 107 ~~~~~-~------~~~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 107 LSEEN-I------DEVLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred CCHHH-H------HHHHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeecc
Confidence 11111 1 1223455678887443 4444455666777788888755543
No 385
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.58 E-value=0.033 Score=53.08 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=47.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc--hhhHHhC--CCccC--CCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISL--GAKYQ--PSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~--~~~~~~~--g~~~~--~~~~~~~~~aDivv~~ 134 (290)
+++|.|+|.|..|.++|+.|...|++|.++|.+... .+.+.+. |+... ...++.+.++|+||..
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 578999999999999999999999999999976432 2334443 33322 1234556789998886
No 386
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.56 E-value=0.017 Score=54.46 Aligned_cols=109 Identities=10% Similarity=0.042 Sum_probs=70.8
Q ss_pred CCeEEEEcc----------cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC----------------------CCccC
Q 022909 71 PGRIGFLGM----------GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----------------------GAKYQ 118 (290)
Q Consensus 71 ~~~IgiiG~----------G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~----------------------g~~~~ 118 (290)
+++|+|+|+ ..-...+++.|...|.+|.+||+.-...+.-... ++..+
T Consensus 324 ~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (473)
T PLN02353 324 GKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVV 403 (473)
T ss_pred CCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeee
Confidence 789999997 3467899999999999999999974332111011 23445
Q ss_pred CCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 119 PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 119 ~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++.+++++++|+|++++..+ +.+.+- -+++.+.|++..+++|.-+.- +. +.+++.|..|..
T Consensus 404 ~~~~~a~~~aD~vvi~t~~~-ef~~l~--~~~~~~~m~~~~~viD~rn~l--~~----~~~~~~G~~y~~ 464 (473)
T PLN02353 404 WDAYEATKGAHGICILTEWD-EFKTLD--YQKIYDNMQKPAFVFDGRNVL--DH----EKLREIGFIVYS 464 (473)
T ss_pred CCHHHHhcCCCEEEECCCCh-HhcccC--HHHHHHhccCCCEEEECCCCC--CH----HHHHhCCcEEEE
Confidence 67778999999999998763 343321 122344566656889874432 22 223344777765
No 387
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.55 E-value=0.027 Score=50.11 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=79.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CCCeEE-EEeCCccchhhHHh-CCCc--------cCCCHHHHhhcCCeEEEEeCChh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AGCDVT-VWNRTKSKCDPLIS-LGAK--------YQPSPDEVAASCDVTFAMLADPE 139 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g~~V~-~~d~~~~~~~~~~~-~g~~--------~~~~~~~~~~~aDivv~~~p~~~ 139 (290)
.-|||+||.|.||+.+...... .|++|. +.|++.+...+..+ .+.. ..+...++++.-.+.+ +.
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~v-----T~ 91 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAV-----TD 91 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEE-----ec
Confidence 4689999999999999888764 588876 55787766544333 1211 1233444554444433 12
Q ss_pred HHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHc-CCcEEe--CccCCCCccc----cCCceEEEecCC-H
Q 022909 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT-GASFLE--APVSGSKKPA----EDGQLIFLAAGD-K 211 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~-~~~~~~--~p~~~~~~~~----~~~~~~~~~~~~-~ 211 (290)
+...++ ... .=..+|+.+..+.+-.+--.+++..+ .+..++ .+++-++... ..+...-.+.|| +
T Consensus 92 D~~~i~--~~~------~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~GDeP 163 (438)
T COG4091 92 DAELII--AND------LIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAGDEP 163 (438)
T ss_pred chhhhh--cCC------cceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEeccCCCCc
Confidence 223333 111 11256777555444444444444332 222222 3333333211 222222223333 4
Q ss_pred HHHHHHHHHHHHhCCcEEEeC
Q 022909 212 SLYNTVAPLLDIMGKSRFYLG 232 (290)
Q Consensus 212 ~~~~~v~~ll~~~G~~~~~~~ 232 (290)
...-.+.++.+++|..++.++
T Consensus 164 ~~~mEL~efa~a~G~evv~aG 184 (438)
T COG4091 164 SSCMELYEFASALGFEVVSAG 184 (438)
T ss_pred HHHHHHHHHHHhcCCeEEecc
Confidence 666788899999999888765
No 388
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.53 E-value=0.013 Score=52.87 Aligned_cols=111 Identities=18% Similarity=0.198 Sum_probs=60.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHC--------CCeE--E-EEeCCccchh-------hHHhCC--Cc-----cCCCHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKA--------GCDV--T-VWNRTKSKCD-------PLISLG--AK-----YQPSPDEVA 125 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~--------g~~V--~-~~d~~~~~~~-------~~~~~g--~~-----~~~~~~~~~ 125 (290)
..+|+|+|+|.+|+.+++.|... |.++ . +.+++..... .+.+.+ .. ...+.++.+
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEERA 81 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHHh
Confidence 47899999999999999998542 4433 3 3454432211 110000 00 111222222
Q ss_pred -h--cCCeEEEEeCCh----hHHHHHhcccccccccCCCCCEEEEecCCC-hhHHHHHHHHHHHcCCcEE
Q 022909 126 -A--SCDVTFAMLADP----ESAMDVACGKHGAASGMGPGKGYVDVSTVD-GDTSKLINGHIKATGASFL 187 (290)
Q Consensus 126 -~--~aDivv~~~p~~----~~~~~~~~~~~~~~~~~~~~~~lin~s~~~-~~~~~~l~~~l~~~~~~~~ 187 (290)
. +.|+||-++|.+ +.....+ ..+++.|..+|-..-.. ....++|.+..++++..+.
T Consensus 82 ~~~~~~dVvVe~T~s~~~~~e~a~~~~------~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~ 145 (346)
T PRK06813 82 TDNISGTVLVESTVTNLKDGNPGKQYI------KQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIR 145 (346)
T ss_pred cCCCCCCEEEECCCCccCCchHHHHHH------HHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEE
Confidence 2 479999998754 2222222 45677888887543221 1233567676777777654
No 389
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=96.50 E-value=0.0067 Score=53.74 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=44.6
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC--CeEEEEeCCccchhhHH----h------CCCccCC-CHHHHhhcCCeEEEEe
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLI----S------LGAKYQP-SPDEVAASCDVTFAML 135 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g--~~V~~~d~~~~~~~~~~----~------~g~~~~~-~~~~~~~~aDivv~~~ 135 (290)
+||+|||.|++|+++|-.|...+ .++.++|...++.+..+ + ....... .-.+.++++|+|+++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 58999999999999999996554 48999999855433211 1 0112222 1145678999999987
No 390
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=96.49 E-value=0.11 Score=43.30 Aligned_cols=105 Identities=14% Similarity=0.135 Sum_probs=70.3
Q ss_pred CCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccC
Q 022909 114 GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVS 192 (290)
Q Consensus 114 g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~ 192 (290)
|+..+++-.|+++++|+|+.-+|.......++ +++.+.+++|+++-+.++.+......+.+.+.+..+.+-+ +|-.
T Consensus 126 g~~vttddreavedad~iitwlpkg~~qpdii---kkfiddipegaivthactipttkf~kifed~gredlnvtsyhpg~ 202 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKGGVQPDII---KKFIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSYHPGT 202 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCCCCCccHH---HHHHhcCCCCceEeeecccchHHHHHHHHHhCccccceeccCCCC
Confidence 45566777889999999999999876666666 5677889999999999888877666666655544444433 4422
Q ss_pred CCCccccCCceEEEec-CCHHHHHHHHHHHHHh
Q 022909 193 GSKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIM 224 (290)
Q Consensus 193 ~~~~~~~~~~~~~~~~-~~~~~~~~v~~ll~~~ 224 (290)
- ...+++..+..| .++++++.+.++=+..
T Consensus 203 v---pemkgqvyiaegyaseeavn~lyelg~ka 232 (343)
T COG4074 203 V---PEMKGQVYIAEGYASEEAVNALYELGEKA 232 (343)
T ss_pred C---ccccCcEEEecccccHHHHHHHHHHHHHh
Confidence 2 223455443333 2567777666665443
No 391
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=96.49 E-value=0.014 Score=52.37 Aligned_cols=89 Identities=20% Similarity=0.201 Sum_probs=62.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHH-HHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPD-EVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~-~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+.+|.|.|.|.+|...++.++..|.+|++.++++++.+.+++.|...+-+.. +.-+..|+++.+...... + .
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~~----~---~ 238 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGGL----V---P 238 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHHH----H---H
Confidence 6799999999999999999999999999999998888777777764332211 111246777766654322 2 2
Q ss_pred cccccCCCCCEEEEecC
Q 022909 150 GAASGMGPGKGYVDVST 166 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~ 166 (290)
..++.++++..++..+.
T Consensus 239 ~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 239 PALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHHhhCCCcEEEEEec
Confidence 23567788887776653
No 392
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=96.47 E-value=0.015 Score=45.02 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=48.5
Q ss_pred EecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhhcCC
Q 022909 206 LAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAA---MKLVVNMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQSFSF 280 (290)
Q Consensus 206 ~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~---~k~~~n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~~~~ 280 (290)
.+.++++..+.+++++..+|.+++.+.......+ ..+.+|+...++ ..+..++++.|++.+++.+++...+.
T Consensus 5 ~iEgd~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~~~L~---~~a~~ll~~~gi~~~~a~~~L~PLi~ 79 (132)
T PF10728_consen 5 AIEGDEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFLVALY---ALAAELLEQAGIDFEEALEALLPLIR 79 (132)
T ss_dssp EEEESHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTT-SHHH--HHHHHHHH
T ss_pred EEecCHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhHHHHH---HHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 3344899999999999999999998877554443 335566655444 66777889999999776666655443
No 393
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.47 E-value=0.006 Score=55.03 Aligned_cols=88 Identities=15% Similarity=0.201 Sum_probs=53.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHH-CCCe---EEEEeC--CccchhhHHhCCCccC-CCHHHHhhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLK-AGCD---VTVWNR--TKSKCDPLISLGAKYQ-PSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~-~g~~---V~~~d~--~~~~~~~~~~~g~~~~-~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
.++|||||+ |.+|+.+.+.|.. ..++ +..+.. +..+.-.+....+... .+.++ +++.|+++.++|.. ..+
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s~ 82 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VSR 82 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HHH
Confidence 579999995 9999999999995 5565 443432 2222111111112211 13333 47899999999764 444
Q ss_pred HHhcccccccccCCCCCEEEEecC
Q 022909 143 DVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.+. . ...+.|..+||.|+
T Consensus 83 ~~~---~---~~~~~G~~VID~Ss 100 (347)
T PRK06728 83 QFV---N---QAVSSGAIVIDNTS 100 (347)
T ss_pred HHH---H---HHHHCCCEEEECch
Confidence 443 1 22356889999984
No 394
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.46 E-value=0.02 Score=53.94 Aligned_cols=63 Identities=22% Similarity=0.309 Sum_probs=43.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-CCc-cCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAK-YQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~-~~~~~~~~~~~aDivv~~ 134 (290)
+++|+|+|+|.-|.+.++.|.. |.+|+++|.++.....+.+. ... ......+.+.++|+||..
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~S 70 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLS 70 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEEC
Confidence 6899999999999999999995 99999999654433222221 111 111223456789988775
No 395
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.45 E-value=0.0063 Score=54.58 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=46.0
Q ss_pred eEEEEcc-cHhHHHHHHHHHHCCC-------eEEEEeCCc--cchhhH----HhC------CCccCCCHHHHhhcCCeEE
Q 022909 73 RIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTK--SKCDPL----ISL------GAKYQPSPDEVAASCDVTF 132 (290)
Q Consensus 73 ~IgiiG~-G~iG~~la~~l~~~g~-------~V~~~d~~~--~~~~~~----~~~------g~~~~~~~~~~~~~aDivv 132 (290)
||+|+|+ |.+|..++..|...|. ++.++|+++ +..+.. .+. +.....+..+.+++||+||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 7999999 9999999999987553 499999986 432211 110 1222245678899999999
Q ss_pred EEeCC
Q 022909 133 AMLAD 137 (290)
Q Consensus 133 ~~~p~ 137 (290)
++.-.
T Consensus 82 itAG~ 86 (323)
T cd00704 82 LVGAF 86 (323)
T ss_pred EeCCC
Confidence 87643
No 396
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=96.44 E-value=0.022 Score=53.18 Aligned_cols=113 Identities=22% Similarity=0.202 Sum_probs=64.9
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccch-h----hHH-hCCCccCC-CHHHHhhcCCeEEEEeC---ChhHHH
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC-D----PLI-SLGAKYQP-SPDEVAASCDVTFAMLA---DPESAM 142 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~-~----~~~-~~g~~~~~-~~~~~~~~aDivv~~~p---~~~~~~ 142 (290)
+|.|||.|..|.++|+.|...|++|.++|..+... . .+. ..|+.... ...+.+.++|+||..-. .++...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~ 80 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ 80 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence 48999999999999999999999999999765421 1 122 23554321 12455678998877532 222222
Q ss_pred HHhc------ccccccccCCCCCEE-EEecCCChhHHHHHHHHHHHcCCc
Q 022909 143 DVAC------GKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGAS 185 (290)
Q Consensus 143 ~~~~------~~~~~~~~~~~~~~l-in~s~~~~~~~~~l~~~l~~~~~~ 185 (290)
.... ...+++..+.+..+| |-=|.|...+..-+...|+..+..
T Consensus 81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~ 130 (433)
T TIGR01087 81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLK 130 (433)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence 2110 011122222233333 333456666666666777765544
No 397
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=96.42 E-value=0.015 Score=51.80 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=55.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+.++.|+|+|.+|...++.++..|.+ |.+.++++++.+...+..+ .+..++.-...|+|+-++.........
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i~~~~~~~~g~Dvvid~~G~~~~~~~~----- 217 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--LDPEKDPRRDYRAIYDASGDPSLIDTL----- 217 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--cChhhccCCCCCEEEECCCCHHHHHHH-----
Confidence 57899999999999999999999987 5567777665544333211 111111123478888887653333322
Q ss_pred cccccCCCCCEEEEec
Q 022909 150 GAASGMGPGKGYVDVS 165 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s 165 (290)
++.++++..++.++
T Consensus 218 --~~~l~~~G~iv~~G 231 (308)
T TIGR01202 218 --VRRLAKGGEIVLAG 231 (308)
T ss_pred --HHhhhcCcEEEEEe
Confidence 45677777777665
No 398
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.42 E-value=0.0095 Score=54.60 Aligned_cols=62 Identities=23% Similarity=0.248 Sum_probs=44.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchh-hHHhCCC-ccCCC---HHHHhhcCCeEE
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD-PLISLGA-KYQPS---PDEVAASCDVTF 132 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~-~~~~~g~-~~~~~---~~~~~~~aDivv 132 (290)
+++|||||.|..|+.++..+.+.|++|+++|++++... ...+.-+ ...++ +.++++.+|+|.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit 68 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVIT 68 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEE
Confidence 37899999999999999999999999999998865422 2222111 11223 555677889875
No 399
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=96.42 E-value=0.022 Score=48.75 Aligned_cols=90 Identities=28% Similarity=0.297 Sum_probs=58.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc-CC----CHHHH-----hhcCCeEEEEeCChhH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-QP----SPDEV-----AASCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-~~----~~~~~-----~~~aDivv~~~p~~~~ 140 (290)
+.+|.|.|.|.+|+.+++.++..|.+|.+.++++++.+.+++.+... .+ +..+. -...|+++.+++....
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~ 214 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPET 214 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHHH
Confidence 67999999999999999999999999999999877666555443211 10 11111 1346777776654222
Q ss_pred HHHHhcccccccccCCCCCEEEEecCC
Q 022909 141 AMDVACGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~lin~s~~ 167 (290)
... .++.++++..+++.+..
T Consensus 215 ~~~-------~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 215 LAQ-------ALRLLRPGGRIVVVGGT 234 (271)
T ss_pred HHH-------HHHhcccCCEEEEEccC
Confidence 222 24556666667766543
No 400
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=96.42 E-value=0.016 Score=49.35 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=60.0
Q ss_pred EEEEeCCccchhhHHh-CCCccCCCHHHHh-hcCCeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCCC---hhH
Q 022909 97 VTVWNRTKSKCDPLIS-LGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD---GDT 171 (290)
Q Consensus 97 V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~-~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~~---~~~ 171 (290)
+.+||+++++.+.+.+ .|+..++++++++ .+.|+|++|.|.....+.. ...++.|..++-.+.+. ...
T Consensus 5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a-------~~aL~aGkhVl~~s~gAlad~e~ 77 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYA-------EKILKNGKDLLIMSVGALADREL 77 (229)
T ss_pred EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHH-------HHHHHCCCCEEEECCcccCCHHH
Confidence 4589999888777665 5677788999987 4799999999875554433 34466666555566553 345
Q ss_pred HHHHHHHHHHcCCcEEe
Q 022909 172 SKLINGHIKATGASFLE 188 (290)
Q Consensus 172 ~~~l~~~l~~~~~~~~~ 188 (290)
.+++.+..++.|..+.-
T Consensus 78 ~~~l~~aA~~~g~~l~i 94 (229)
T TIGR03855 78 RERLREVARSSGRKVYI 94 (229)
T ss_pred HHHHHHHHHhcCCEEEE
Confidence 67788888887766443
No 401
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=96.41 E-value=0.0038 Score=57.59 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=30.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..+|.|||+|.+|..+++.|+..|. +++++|.+.
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 6899999999999999999999997 788888753
No 402
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=96.41 E-value=0.023 Score=52.07 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=45.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCC-------eEEEE--eCCccchhhHHh----------CCCccCCCHHHHhhcCCe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVW--NRTKSKCDPLIS----------LGAKYQPSPDEVAASCDV 130 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~-------~V~~~--d~~~~~~~~~~~----------~g~~~~~~~~~~~~~aDi 130 (290)
.-||+|||+ |++|..+|-.+...|. .+.++ |++.++++..+- ..+....+..+.+++||+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDI 123 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADW 123 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCE
Confidence 478999999 9999999999987654 23344 777766433211 122323344577899999
Q ss_pred EEEEeCC
Q 022909 131 TFAMLAD 137 (290)
Q Consensus 131 vv~~~p~ 137 (290)
||++...
T Consensus 124 VVitAG~ 130 (387)
T TIGR01757 124 ALLIGAK 130 (387)
T ss_pred EEECCCC
Confidence 9997653
No 403
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=96.37 E-value=0.0071 Score=58.35 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=29.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 103 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~ 103 (290)
..+|.|+|+|.+|..+|+.|.+.|. +++++|.+
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 5799999999999999999999997 67777753
No 404
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.35 E-value=0.0086 Score=48.95 Aligned_cols=65 Identities=15% Similarity=0.313 Sum_probs=42.4
Q ss_pred eEEEEcccHhHHHH--HHHHHHC----CCeEEEEeCCccchhhHHh--------CC----CccCCCHHHHhhcCCeEEEE
Q 022909 73 RIGFLGMGIMGTPM--AQNLLKA----GCDVTVWNRTKSKCDPLIS--------LG----AKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 73 ~IgiiG~G~iG~~l--a~~l~~~----g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~aDivv~~ 134 (290)
||+|||.|..-... ...+... +-+|.++|+++++.+.... .+ +..++|.+++++++|+|+..
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 69999999876542 2222222 2389999999988664322 22 34578999999999999998
Q ss_pred eCC
Q 022909 135 LAD 137 (290)
Q Consensus 135 ~p~ 137 (290)
.-.
T Consensus 81 irv 83 (183)
T PF02056_consen 81 IRV 83 (183)
T ss_dssp --T
T ss_pred eee
Confidence 753
No 405
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=96.34 E-value=0.015 Score=51.62 Aligned_cols=64 Identities=23% Similarity=0.270 Sum_probs=50.7
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhh---HHhC------------CCccCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP---LISL------------GAKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~---~~~~------------g~~~~~~~~~~~~~aDivv~~ 134 (290)
+++|+|-|+ |.||+.+.+.|...||.|.+.-|++++.+. +.+. .+.-..+++++++.||.|+-+
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~ 85 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHT 85 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEe
Confidence 689999995 999999999999999999999999876322 2221 123346889999999998743
No 406
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.34 E-value=0.013 Score=59.26 Aligned_cols=70 Identities=29% Similarity=0.379 Sum_probs=53.9
Q ss_pred CCCCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc------------h---------hhHHhCCCcc--------CC
Q 022909 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK------------C---------DPLISLGAKY--------QP 119 (290)
Q Consensus 69 ~~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~------------~---------~~~~~~g~~~--------~~ 119 (290)
.++++|+|||.|.-|.+-|..|-+.||.|++|.|+..- . +-+.+.|+.+ ..
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~v 1862 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHV 1862 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccc
Confidence 44899999999999999999999999999999987431 1 1122234433 24
Q ss_pred CHHHHhhcCCeEEEEeCCh
Q 022909 120 SPDEVAASCDVTFAMLADP 138 (290)
Q Consensus 120 ~~~~~~~~aDivv~~~p~~ 138 (290)
+++++.+.-|.||+++-.+
T Consensus 1863 s~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1863 SLDELKKENDAIVLATGST 1881 (2142)
T ss_pred cHHHHhhccCeEEEEeCCC
Confidence 7899999999999997644
No 407
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.33 E-value=0.015 Score=57.42 Aligned_cols=67 Identities=22% Similarity=0.431 Sum_probs=50.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc---------------------chhhHHhCCCccC--------CCH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS---------------------KCDPLISLGAKYQ--------PSP 121 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~---------------------~~~~~~~~g~~~~--------~~~ 121 (290)
+++|.|||.|..|...|..|+..|++|+++++.+. ..+.+.+.|+.+. .+.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~ 406 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISL 406 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCH
Confidence 78999999999999999999999999999998643 1122333454321 145
Q ss_pred HHHhhcCCeEEEEeCC
Q 022909 122 DEVAASCDVTFAMLAD 137 (290)
Q Consensus 122 ~~~~~~aDivv~~~p~ 137 (290)
+++..+.|.|++++..
T Consensus 407 ~~~~~~~DavilAtGa 422 (654)
T PRK12769 407 ESLLEDYDAVFVGVGT 422 (654)
T ss_pred HHHHhcCCEEEEeCCC
Confidence 5666789999998753
No 408
>PLN02775 Probable dihydrodipicolinate reductase
Probab=96.30 E-value=0.056 Score=47.29 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=67.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEE-EEeCCccchh---hHHhCCCccC--CCHHHHhh-----cCCeEEEEeCCh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCD---PLISLGAKYQ--PSPDEVAA-----SCDVTFAMLADP 138 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~-~~d~~~~~~~---~~~~~g~~~~--~~~~~~~~-----~aDivv~~~p~~ 138 (290)
..+|.|.|+ |+||+.+++...+.++++. ..|+.+...+ .+...++... .++++++. .+|.|++=...+
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P 90 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYTLP 90 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECCCh
Confidence 578999995 9999999999988888766 4565543211 1111234444 78888873 378566555566
Q ss_pred hHHHHHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
..+...+ ....+.+.-+|--++|-.. +++.+...+.++..+-+|+|.
T Consensus 91 ~a~~~~~------~~~~~~g~~~VvGTTG~~~--e~l~~~~~~~~i~vv~apNfS 137 (286)
T PLN02775 91 DAVNDNA------ELYCKNGLPFVMGTTGGDR--DRLLKDVEESGVYAVIAPQMG 137 (286)
T ss_pred HHHHHHH------HHHHHCCCCEEEECCCCCH--HHHHHHHhcCCccEEEECccc
Confidence 6665554 1223344444433343322 244444444567677677654
No 409
>PRK08223 hypothetical protein; Validated
Probab=96.30 E-value=0.034 Score=48.81 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=31.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..+|.|||+|.+|..++..|+..|. ++.++|.+.
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 6899999999999999999999997 788998764
No 410
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.29 E-value=0.021 Score=51.63 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=38.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|+|.|.+|...++.++..|.+|++.++++++.+.+++.|+
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga 211 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA 211 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence 689999999999999999999999999999998887766655554
No 411
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.26 E-value=0.019 Score=53.39 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=66.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEE--------EeCC---ccchhhHHh---------------C-CCccCCCHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTV--------WNRT---KSKCDPLIS---------------L-GAKYQPSPDE 123 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~--------~d~~---~~~~~~~~~---------------~-g~~~~~~~~~ 123 (290)
++||.|-|+|++|+..|+.|...|.+|++ ||++ .++.+.+.+ . +.+.. +.++
T Consensus 228 g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~~ 306 (445)
T PRK14030 228 GKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGKK 306 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCcc
Confidence 79999999999999999999999999988 7744 222111111 1 22222 2334
Q ss_pred Hhh-cCCeEEEEeCChhHHHHHhcccccccccC-CCCC-EEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 124 VAA-SCDVTFAMLADPESAMDVACGKHGAASGM-GPGK-GYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 124 ~~~-~aDivv~~~p~~~~~~~~~~~~~~~~~~~-~~~~-~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++. +|||++-|- +.+.+ +.+..+.+ +.++ +|+--+++ +.+. +-.+.|.++|+.++.
T Consensus 307 ~~~~~cDVliPcA-----l~n~I--~~~na~~l~~~~ak~V~EgAN~-p~t~-eA~~iL~~rGI~~vP 365 (445)
T PRK14030 307 PWEQKVDIALPCA-----TQNEL--NGEDADKLIKNGVLCVAEVSNM-GCTA-EAIDKFIAAKQLFAP 365 (445)
T ss_pred ceeccccEEeecc-----ccccC--CHHHHHHHHHcCCeEEEeCCCC-CCCH-HHHHHHHHCCCEEeC
Confidence 443 589887554 33444 23333334 2233 45555555 5544 455788888988764
No 412
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.25 E-value=0.023 Score=50.16 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=34.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||..+++.|+..|++|++.+|+.++.+.+
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~ 80 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAV 80 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 688999995 9999999999999999999999987655443
No 413
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.23 E-value=0.026 Score=52.50 Aligned_cols=109 Identities=21% Similarity=0.220 Sum_probs=65.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEE-EEeCC----------ccchhhHH---h-------------CCCccCCCHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLI---S-------------LGAKYQPSPDE 123 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~-~~d~~----------~~~~~~~~---~-------------~g~~~~~~~~~ 123 (290)
++||.|-|+|++|+..|+.|...|.+|+ +.|.+ .+++..+. + .+....+ .++
T Consensus 237 Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~-~~~ 315 (454)
T PTZ00079 237 GKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVP-GKK 315 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeC-CcC
Confidence 7999999999999999999999999988 66665 22221111 1 0222222 223
Q ss_pred Hh-hcCCeEEEEeCChhHHHHHhcccccccccC-CCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 124 VA-ASCDVTFAMLADPESAMDVACGKHGAASGM-GPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 124 ~~-~~aDivv~~~p~~~~~~~~~~~~~~~~~~~-~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
++ -+|||.+-|- +.+.+ +.+..+.+ +.++.+|--+...+.+. +-.+.|.++++.|+.
T Consensus 316 ~~~~~cDI~iPcA-----~~n~I--~~~~a~~l~~~~ak~V~EgAN~p~t~-eA~~~L~~~GI~~~P 374 (454)
T PTZ00079 316 PWEVPCDIAFPCA-----TQNEI--NLEDAKLLIKNGCKLVAEGANMPTTI-EATHLFKKNGVIFCP 374 (454)
T ss_pred cccCCccEEEecc-----ccccC--CHHHHHHHHHcCCeEEEecCCCCCCH-HHHHHHHHCCcEEEC
Confidence 33 3689887654 23333 22222322 44555555544445555 556788888888864
No 414
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.22 E-value=0.012 Score=41.15 Aligned_cols=34 Identities=29% Similarity=0.522 Sum_probs=31.4
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK 106 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~ 106 (290)
+|.|||.|.+|..+|..|...|.+|+++.+++.-
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 5899999999999999999999999999988654
No 415
>PRK07454 short chain dehydrogenase; Provisional
Probab=96.21 E-value=0.02 Score=48.69 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=33.9
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
++++.|.|. |.+|+.+++.|...|++|++.+|++++.+.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~ 45 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEA 45 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 578999985 999999999999999999999998765443
No 416
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=96.20 E-value=0.032 Score=50.07 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=39.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|+|.|.+|...++.++..|.+ |++.++++++.+.+++.|+
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga 209 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA 209 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence 68999999999999999999999998 9999998887766666554
No 417
>PRK12939 short chain dehydrogenase; Provisional
Probab=96.20 E-value=0.023 Score=48.41 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=34.0
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
++++.|.|. |.||+.+++.|...|++|.+.+|++++...
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~ 46 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARE 46 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 689999995 999999999999999999999988765443
No 418
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=96.19 E-value=0.024 Score=50.44 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=46.5
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh---C------------CCccCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS---L------------GAKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~---~------------g~~~~~~~~~~~~~aDivv~~ 134 (290)
+++|.|.| +|.||+.+++.|...|++|.+.+|++........ . .+....+++++++++|+|+.+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 83 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHT 83 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEe
Confidence 68999999 6999999999999999999988887654221110 0 111123466778888988766
Q ss_pred e
Q 022909 135 L 135 (290)
Q Consensus 135 ~ 135 (290)
.
T Consensus 84 A 84 (322)
T PLN02662 84 A 84 (322)
T ss_pred C
Confidence 5
No 419
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=96.19 E-value=0.068 Score=46.54 Aligned_cols=112 Identities=17% Similarity=0.105 Sum_probs=64.1
Q ss_pred eEEEEcc-cHhHHHHHHHHHHCCCeEEEE--eCCcc--chhhHHhCCCcc------CCCHHHHhhc-CCeEEEEeCChhH
Q 022909 73 RIGFLGM-GIMGTPMAQNLLKAGCDVTVW--NRTKS--KCDPLISLGAKY------QPSPDEVAAS-CDVTFAMLADPES 140 (290)
Q Consensus 73 ~IgiiG~-G~iG~~la~~l~~~g~~V~~~--d~~~~--~~~~~~~~g~~~------~~~~~~~~~~-aDivv~~~p~~~~ 140 (290)
+|.|.|+ |+||+.+++.....++++... ++... +...+...++.. ..+++++++. +|.|++=...|..
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT~P~~ 81 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYTHPSA 81 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECCChHH
Confidence 6899995 999999999988888887753 43321 111121123444 5688888877 8955554445566
Q ss_pred HHHHhcccccccccCCCCC-EEEEecCCChhHHHHHHHHHHHcCCcEEeCccCC
Q 022909 141 AMDVACGKHGAASGMGPGK-GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~-~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 193 (290)
+...+ ....+.+. ++|-++.......+++ .+..++..+-+|+|.
T Consensus 82 ~~~n~------~~~~~~gv~~ViGTTG~~~~~~~~l---~~~~~i~~l~apNfS 126 (275)
T TIGR02130 82 VNDNA------AFYGKHGIPFVMGTTGGDREALAKL---VADAKHPAVIAPNMA 126 (275)
T ss_pred HHHHH------HHHHHCCCCEEEcCCCCCHHHHHHH---HHhcCCCEEEECccc
Confidence 55554 12233343 4454433333333333 333356666677654
No 420
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=96.19 E-value=0.013 Score=52.97 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=51.5
Q ss_pred CeEEEEcc-cHhHHHHHHHHHHCC-CeEEEE-eCCccchhhHHh-C------CC-------ccCCCHHHHhhcCCeEEEE
Q 022909 72 GRIGFLGM-GIMGTPMAQNLLKAG-CDVTVW-NRTKSKCDPLIS-L------GA-------KYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~~l~~~g-~~V~~~-d~~~~~~~~~~~-~------g~-------~~~~~~~~~~~~aDivv~~ 134 (290)
++|+|+|+ |.+|+.+++.+..+. +++... +...+....+.+ . +. .+.+..++...++|+|+++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 47999995 999999999998866 577655 543322222211 0 01 0101122345789999999
Q ss_pred eCChhHHHHHhcccccccccCCCCCEEEEecC
Q 022909 135 LADPESAMDVACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 135 ~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~ 166 (290)
+|.... ..+. ......|..+|+.|.
T Consensus 81 ~p~~~s-~~~~------~~~~~~G~~VIDlsg 105 (341)
T TIGR00978 81 LPSEVA-EEVE------PKLAEAGKPVFSNAS 105 (341)
T ss_pred CCHHHH-HHHH------HHHHHCCCEEEECCh
Confidence 987533 3332 112245777777763
No 421
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.14 E-value=0.043 Score=51.65 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=45.5
Q ss_pred eEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc-h----hhHHhCCCccC--CCHH-----HHhhcCCeEEEEe
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-C----DPLISLGAKYQ--PSPD-----EVAASCDVTFAML 135 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~-~----~~~~~~g~~~~--~~~~-----~~~~~aDivv~~~ 135 (290)
+|.|||.|..|.+.|+.|...|++|.++|+.+.. . ..+.+.|+... ...+ +.+.+.|.|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 5999999999999999999999999999986532 1 12444565442 1111 3567899888743
No 422
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.13 E-value=0.02 Score=56.28 Aligned_cols=67 Identities=19% Similarity=0.413 Sum_probs=50.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc---------------------chhhHHhCCCcc--------CCCH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS---------------------KCDPLISLGAKY--------QPSP 121 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~---------------------~~~~~~~~g~~~--------~~~~ 121 (290)
+++|.|||.|..|...|..|+..|++|++|++.+. ..+.+.+.|+.+ ..++
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~ 389 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITF 389 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCCH
Confidence 79999999999999999999999999999998763 122233345432 1245
Q ss_pred HHHhhcCCeEEEEeCC
Q 022909 122 DEVAASCDVTFAMLAD 137 (290)
Q Consensus 122 ~~~~~~aDivv~~~p~ 137 (290)
+++....|.|++++-.
T Consensus 390 ~~l~~~~DaV~latGa 405 (639)
T PRK12809 390 SDLTSEYDAVFIGVGT 405 (639)
T ss_pred HHHHhcCCEEEEeCCC
Confidence 6666789999998864
No 423
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.12 E-value=0.093 Score=45.20 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=32.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
..++-|+|.|.+++++++.+...|++|+++|.+++
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 47899999999999999999999999999997765
No 424
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.11 E-value=0.01 Score=52.81 Aligned_cols=65 Identities=26% Similarity=0.365 Sum_probs=47.0
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCc-------cCCCHHHHhhcCCeEEEEeC
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------YQPSPDEVAASCDVTFAMLA 136 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~aDivv~~~p 136 (290)
|+|.|.| .|.+|+.+++.|.+.|++|.+.+|++++...+...++. ..+++.++++.+|+|+.+.+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 4789998 59999999999999999999999987654333222222 11245566778998887653
No 425
>PRK06180 short chain dehydrogenase; Provisional
Probab=96.10 E-value=0.03 Score=48.84 Aligned_cols=40 Identities=23% Similarity=0.176 Sum_probs=34.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
+++|.|.|. |.||+.+++.|...|++|.+.+|++++.+.+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l 44 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADF 44 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHH
Confidence 678999985 9999999999999999999999987665444
No 426
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.09 E-value=0.018 Score=48.74 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=35.0
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
+++|.|.|. |.||..+++.|...|++|++.+|++++.+.+
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRM 45 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 689999995 8999999999999999999999987765443
No 427
>PRK06197 short chain dehydrogenase; Provisional
Probab=96.08 E-value=0.053 Score=48.01 Aligned_cols=38 Identities=21% Similarity=0.115 Sum_probs=33.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~ 108 (290)
+++|.|.|. |.||..+++.|...|++|++.+|+.++.+
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~ 54 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGK 54 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 788999984 99999999999999999999999876543
No 428
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=96.08 E-value=0.065 Score=50.34 Aligned_cols=112 Identities=21% Similarity=0.227 Sum_probs=66.3
Q ss_pred eEEEEcccHhHHH-HHHHHHHCCCeEEEEeCCccc-hhhHHhCCCccCC-CHHHHhhcCCeEEEEe--CC-hhHHHHHhc
Q 022909 73 RIGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQP-SPDEVAASCDVTFAML--AD-PESAMDVAC 146 (290)
Q Consensus 73 ~IgiiG~G~iG~~-la~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~-~~~~~~~~aDivv~~~--p~-~~~~~~~~~ 146 (290)
+|-+||.|..|.+ +|+.|...|++|.++|.+... .+.+.+.|+.... ...+.++++|+||..- |. .+.......
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE 80 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 3789999999998 999999999999999976532 2345555665432 2234567799888752 22 233332211
Q ss_pred c------ccccc-ccCCCCCEE-EEecCCChhHHHHHHHHHHHcCC
Q 022909 147 G------KHGAA-SGMGPGKGY-VDVSTVDGDTSKLINGHIKATGA 184 (290)
Q Consensus 147 ~------~~~~~-~~~~~~~~l-in~s~~~~~~~~~l~~~l~~~~~ 184 (290)
. ..+++ ..+++..++ |-=|.|+..++.-+...|+..+.
T Consensus 81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 0 11122 223333343 33335566666666677776664
No 429
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=96.07 E-value=0.023 Score=49.16 Aligned_cols=60 Identities=18% Similarity=0.341 Sum_probs=45.1
Q ss_pred cccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhh-cCCeEEEEeCC
Q 022909 78 GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLAD 137 (290)
Q Consensus 78 G~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivv~~~p~ 137 (290)
|+|-||+++...|...||+|++..|++.+........+...+.+++... .+|+||.-.-.
T Consensus 6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~ 66 (297)
T COG1090 6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGE 66 (297)
T ss_pred cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCCC
Confidence 5799999999999999999999999987765433333333445566655 59999876543
No 430
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.07 E-value=0.018 Score=49.45 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=46.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC--CCcc-----CC---CHHHHh-hcCCeEEEEeC
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKY-----QP---SPDEVA-ASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~--g~~~-----~~---~~~~~~-~~aDivv~~~p 136 (290)
+++|.|+| .|.+|+.+++.|...|++|++..|++++....... ++.. .+ ++.+.+ ...|+|+.+.+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g 94 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATG 94 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCC
Confidence 68999999 59999999999999999999999887654332211 1211 11 233444 46898887654
No 431
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=96.05 E-value=0.085 Score=53.12 Aligned_cols=170 Identities=14% Similarity=0.110 Sum_probs=86.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHH--------CCCeE--E-EEeCCccc-------hhhHHhC--CCccCCCHH---HHhhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK--------AGCDV--T-VWNRTKSK-------CDPLISL--GAKYQPSPD---EVAAS 127 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~--------~g~~V--~-~~d~~~~~-------~~~~~~~--g~~~~~~~~---~~~~~ 127 (290)
..+|+++|+|.+|+.+++.|.. .|.++ . +.+++... ...+.+. ......+.+ +.+..
T Consensus 458 ~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e~i~~ 537 (810)
T PRK09466 458 RIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFLWLRA 537 (810)
T ss_pred eEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHHHHhh
Confidence 4679999999999999999854 25443 3 44544321 1111110 000011222 33332
Q ss_pred --C--CeEEEEeCChhHHHHHhcccccccccCCCCCEEEEecCC----ChhHHHHHHHHHHHcCCcEEe-CccCCCCccc
Q 022909 128 --C--DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV----DGDTSKLINGHIKATGASFLE-APVSGSKKPA 198 (290)
Q Consensus 128 --a--Divv~~~p~~~~~~~~~~~~~~~~~~~~~~~~lin~s~~----~~~~~~~l~~~l~~~~~~~~~-~p~~~~~~~~ 198 (290)
. ++||-+.+..+. ...+ .+.++.|..+|-..-. ......+|.+..++++..+.. +.+.++.
T Consensus 538 ~~~~~~vvVd~t~~~~~-~~~~------~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~gi--- 607 (810)
T PRK09466 538 HPYDELVVLDVTASEQL-ALQY------PDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGL--- 607 (810)
T ss_pred cCCCCcEEEECCCChHH-HHHH------HHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeecc---
Confidence 2 377777665332 2222 3556777777755431 233455666666666666543 3332222
Q ss_pred cCCceEEEecCCHHHHHHHHHHHHHhCCcEEEeCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCC
Q 022909 199 EDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGRS-CTFSYSFLTLEFVDFL 267 (290)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~~k~~~n~~~~~~-~~~~ea~~l~~~~G~~ 267 (290)
..++.++.+.+. |.++..+..+-++-.- ++.+... . ..+.|++.-|++.|..
T Consensus 608 -------------Pii~~l~~l~~~-gd~i~~i~GIlnGT~n-yi~~~~~--~g~~f~eal~~Aq~~Gya 660 (810)
T PRK09466 608 -------------PINHTVRDLRNS-GDSILAISGIFSGTLS-WLFLQFD--GSVPFSELVDQAWQQGLT 660 (810)
T ss_pred -------------ChHHHHHHHHhc-cCcEEEEEEEEccHHH-HHHHHHh--cCCCHHHHHHHHHHcCCC
Confidence 123455555543 7666666554333321 1222111 1 5677888888888854
No 432
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=96.05 E-value=0.041 Score=49.68 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=57.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHH-CC-CeEEEEeCCccchhhHHhCCCccCCCHHHHhh--cCCeEEEEeCChhHHHHHhc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVAC 146 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~-~g-~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivv~~~p~~~~~~~~~~ 146 (290)
+.+|.|+|+|.+|...++.++. .| .+|++.++++++.+.+++.+... ..+++.+ ..|+|+-++.... ....+
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~~~~~~~~g~d~viD~~G~~~-~~~~~- 239 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LIDDIPEDLAVDHAFECVGGRG-SQSAI- 239 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--ehhhhhhccCCcEEEECCCCCc-cHHHH-
Confidence 6899999999999998888875 44 68999999988776655433321 1122222 3688888876310 11112
Q ss_pred ccccccccCCCCCEEEEec
Q 022909 147 GKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 147 ~~~~~~~~~~~~~~lin~s 165 (290)
...++.++++..++..+
T Consensus 240 --~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 240 --NQIIDYIRPQGTIGLMG 256 (341)
T ss_pred --HHHHHhCcCCcEEEEEe
Confidence 12356678877777664
No 433
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.05 E-value=0.026 Score=48.30 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=35.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
+++|.|.| .|.+|+.+++.|...|++|.+.+|++++.+.+
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~ 44 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAA 44 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 68999999 59999999999999999999999987765443
No 434
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=96.05 E-value=0.024 Score=49.88 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=27.6
Q ss_pred eEEEEcccHhHHHHHHHHHHCCC-eEEEEeCC
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 103 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~ 103 (290)
+|.|||+|.+|..+++.|+..|. ++++.|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 58999999999999999999997 68888764
No 435
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.03 E-value=0.034 Score=48.89 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=44.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCCccCCCHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPSPD 122 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~ 122 (290)
+.+++|.|+|.+|.++++..+.+|. +|+..|.|+++-+..++.|+.-+-+..
T Consensus 193 GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~ 245 (375)
T KOG0022|consen 193 GSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPK 245 (375)
T ss_pred CCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChh
Confidence 7899999999999999999999996 899999999998888887765443433
No 436
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.02 E-value=0.029 Score=47.44 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=33.7
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~ 108 (290)
+++|.|.|. |.+|+.+++.|.+.|++|++.+|++++.+
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~ 43 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAE 43 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHH
Confidence 578999995 99999999999999999999999876544
No 437
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=96.01 E-value=0.026 Score=50.27 Aligned_cols=32 Identities=19% Similarity=0.452 Sum_probs=28.5
Q ss_pred eEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
+|.|||+|.+|..+++.|+..|. +++++|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 58999999999999999999997 788888653
No 438
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=96.01 E-value=0.021 Score=48.56 Aligned_cols=39 Identities=18% Similarity=0.125 Sum_probs=34.2
Q ss_pred CCCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchh
Q 022909 70 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (290)
Q Consensus 70 ~~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~ 108 (290)
++++|.|.| .|.+|..+++.|...|++|++.+|++++..
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~ 44 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAA 44 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 378999999 699999999999999999999999865443
No 439
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=96.00 E-value=0.0063 Score=48.11 Aligned_cols=87 Identities=13% Similarity=0.170 Sum_probs=51.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhccccc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~~ 150 (290)
+++|++||+= ..+++.+...+.++.++|++++..... .+.......++++++||+|+++-. .-..+-+ ++
T Consensus 11 ~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~l~~aD~viiTGs--TlvN~Ti---~~ 80 (147)
T PF04016_consen 11 GDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEE--PGDVPDEDAEEILPWADVVIITGS--TLVNGTI---DD 80 (147)
T ss_dssp TSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SS--CT-EEGGGHHHHGGG-SEEEEECH--HCCTTTH---HH
T ss_pred CCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCC--CCcCCHHHHHHHHccCCEEEEEee--eeecCCH---HH
Confidence 7999999951 126777777889999999998643221 111234567889999999998742 1111222 22
Q ss_pred ccccCCCCCEEEEecCC
Q 022909 151 AASGMGPGKGYVDVSTV 167 (290)
Q Consensus 151 ~~~~~~~~~~lin~s~~ 167 (290)
+++..++++.++-.+..
T Consensus 81 iL~~~~~~~~vil~GpS 97 (147)
T PF04016_consen 81 ILELARNAREVILYGPS 97 (147)
T ss_dssp HHHHTTTSSEEEEESCC
T ss_pred HHHhCccCCeEEEEecC
Confidence 34445555655555433
No 440
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.00 E-value=0.035 Score=50.02 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=35.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||+++++.|...|++|++.+|++++.+++
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~ 47 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAV 47 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 688999996 8999999999999999999999987765543
No 441
>PRK08643 acetoin reductase; Validated
Probab=95.99 E-value=0.026 Score=48.37 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=33.6
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
++++.|+| .|.||..+++.|...|++|.+.+|++++.+.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~ 41 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQA 41 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 57888988 5999999999999999999999998765443
No 442
>PLN02427 UDP-apiose/xylose synthase
Probab=95.98 E-value=0.019 Score=52.78 Aligned_cols=65 Identities=17% Similarity=0.291 Sum_probs=46.0
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHC-CCeEEEEeCCccchhhHHhC-------CCc-------cCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISL-------GAK-------YQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~-g~~V~~~d~~~~~~~~~~~~-------g~~-------~~~~~~~~~~~aDivv~~ 134 (290)
.|||.|.| +|.||+.+++.|... |++|.+.+++.++...+... ++. -..++.++++++|+||-+
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHl 93 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINL 93 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEc
Confidence 68999999 599999999999987 59999999876544332211 111 112355667789987765
Q ss_pred e
Q 022909 135 L 135 (290)
Q Consensus 135 ~ 135 (290)
.
T Consensus 94 A 94 (386)
T PLN02427 94 A 94 (386)
T ss_pred c
Confidence 4
No 443
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.98 E-value=0.032 Score=47.20 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=34.5
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
+++|.|+| .|.+|+.+++.|...|++|.+.+|++++...+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEA 46 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHH
Confidence 58899998 49999999999999999999999987654443
No 444
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=95.98 E-value=0.012 Score=53.95 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=43.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHH----h---CCCccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI----S---LGAKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~----~---~g~~~~~~~~~~~~~aDivv~~~ 135 (290)
+|+|.|.|. |.||+.+++.|.+.|++|++.+|......... + ..+....++..+++++|+||-+.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 789999996 99999999999999999999998643211000 0 01111122344566789888665
No 445
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.98 E-value=0.029 Score=47.80 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=33.6
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~ 108 (290)
++++.|.|. |.||..+++.|...|++|++.+|+++..+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~ 44 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAE 44 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 688999996 99999999999999999999999865443
No 446
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.97 E-value=0.031 Score=52.88 Aligned_cols=68 Identities=24% Similarity=0.430 Sum_probs=50.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc---------------------chhhHHhCCCccC------C--CH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS---------------------KCDPLISLGAKYQ------P--SP 121 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~---------------------~~~~~~~~g~~~~------~--~~ 121 (290)
+++|.|||.|..|...|..|+..|++|+++++.+. ..+.+.+.|+... . ..
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~ 220 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDISL 220 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccCH
Confidence 78999999999999999999999999999987652 1233444554321 1 34
Q ss_pred HHHhhcCCeEEEEeCCh
Q 022909 122 DEVAASCDVTFAMLADP 138 (290)
Q Consensus 122 ~~~~~~aDivv~~~p~~ 138 (290)
+++....|.|++++...
T Consensus 221 ~~~~~~~D~vilAtGa~ 237 (467)
T TIGR01318 221 DDLLEDYDAVFLGVGTY 237 (467)
T ss_pred HHHHhcCCEEEEEeCCC
Confidence 55556799999998654
No 447
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=95.96 E-value=0.051 Score=49.49 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=54.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhH-HhCCCccC---CC---HHHHhhcCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-ISLGAKYQ---PS---PDEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~-~~~g~~~~---~~---~~~~~~~aDivv~~~p~~~~~~~ 143 (290)
+.+|.|.|.|.+|...++.++..|.+|++.+.+.++...+ ++.|+..+ .+ ..+.....|+|+-++..+.....
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~~~~~ 263 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVHALGP 263 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHHHHHH
Confidence 6899999999999999999999999988887776554333 34554211 11 11222235777766543222222
Q ss_pred HhcccccccccCCCCCEEEEec
Q 022909 144 VACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s 165 (290)
.++.++++..++.++
T Consensus 264 -------~~~~l~~~G~iv~vG 278 (360)
T PLN02586 264 -------LLGLLKVNGKLITLG 278 (360)
T ss_pred -------HHHHhcCCcEEEEeC
Confidence 234566666666554
No 448
>PRK08265 short chain dehydrogenase; Provisional
Probab=95.96 E-value=0.04 Score=47.56 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=34.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||+++++.|.+.|++|++.+|++++.+++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 46 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAV 46 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 688999985 9999999999999999999999987655443
No 449
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.94 E-value=0.033 Score=50.86 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=38.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|.|.|.+|...++.++..|. +|++.++++++.+.+++.|+
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga 237 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA 237 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC
Confidence 5789999999999999999999998 69999999888776666655
No 450
>PRK07024 short chain dehydrogenase; Provisional
Probab=95.92 E-value=0.027 Score=48.46 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=34.5
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.| .|.||+.+++.|...|++|.+.+|++++.+.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~ 42 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAF 42 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57899998 69999999999999999999999987655443
No 451
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.92 E-value=0.32 Score=42.40 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=31.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
..+|.|+|+|.+|..++..|+..|. +++++|.+.
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 6899999999999999999999995 899998764
No 452
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.91 E-value=0.29 Score=43.41 Aligned_cols=201 Identities=11% Similarity=0.107 Sum_probs=112.7
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-CeEEEEeCCccchhhHHhC--------------------CC----ccCCCHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL--------------------GA----KYQPSPDEVA 125 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-~~V~~~d~~~~~~~~~~~~--------------------g~----~~~~~~~~~~ 125 (290)
..++.++|+|...-.+|.-+...| +++-+++|-..+.+.+.+. |- .+..++.++.
T Consensus 4 m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~~ 83 (431)
T COG4408 4 MLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQAV 83 (431)
T ss_pred ccceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHhh
Confidence 578999999999999999999887 5888888755444444331 10 1234566677
Q ss_pred hcCCeEEEEeCChhHHHHHhcccccccccCCCC--CEEEEecCCChhHHHHHHHHHHHcCCcEEe-CccCCC------Cc
Q 022909 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPG--KGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGS------KK 196 (290)
Q Consensus 126 ~~aDivv~~~p~~~~~~~~~~~~~~~~~~~~~~--~~lin~s~~~~~~~~~l~~~l~~~~~~~~~-~p~~~~------~~ 196 (290)
.+-+-+|++||. ++...++..- -.+.++.= .++|+-+-|+-.....+...+. ..+.+++ ....+. +.
T Consensus 84 ~dwqtlilav~a-DaY~dvlqqi--~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~-~daeViS~SsY~~dTk~id~~~ 159 (431)
T COG4408 84 GDWQTLILAVPA-DAYYDVLQQI--PWEALPQVKSVILISPTFGSNLLVQNLMNKAG-RDAEVISLSSYYADTKYIDAEQ 159 (431)
T ss_pred chhheEEEEeec-HHHHHHHhcC--CHhHhccccEEEEecccccccHHHHHHHhhhC-CCceEEEeehhcccceeecccC
Confidence 778899999987 5555665210 12223332 3444444344333333333222 2233333 111111 11
Q ss_pred c------ccCCceEEEec---CCHHHHHHHHHHHHHhCCcEEEeCCcchHHH-----------------HHHHH------
Q 022909 197 P------AEDGQLIFLAA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAA-----------------MKLVV------ 244 (290)
Q Consensus 197 ~------~~~~~~~~~~~---~~~~~~~~v~~ll~~~G~~~~~~~~~g~a~~-----------------~k~~~------ 244 (290)
. +.+.. +..| ++....+.+.+++...|..+..+..+-.++- ++.+.
T Consensus 160 p~~alTkavKkr--iYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~~p 237 (431)
T COG4408 160 PNRALTKAVKKR--IYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQRP 237 (431)
T ss_pred cchHHHHHHhHh--eeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcCCC
Confidence 1 01111 2222 3446677899999999887776654322221 11110
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhh
Q 022909 245 --------------NMIMGRSCTFSYSFLTLEFVDFLINTVTMFLQS 277 (290)
Q Consensus 245 --------------n~~~~~~~~~~ea~~l~~~~G~~~~~~~~~i~~ 277 (290)
..+..+...+.|.+++..+.|+..=.+..+++.
T Consensus 238 ~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~d 284 (431)
T COG4408 238 QYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLND 284 (431)
T ss_pred ceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhcc
Confidence 112222267889999999999988777777653
No 453
>PLN02780 ketoreductase/ oxidoreductase
Probab=95.91 E-value=0.026 Score=50.53 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=35.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|+ |.||+++|+.|++.|++|.+.+|++++.+..
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~ 93 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDV 93 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence 688999995 8999999999999999999999998766544
No 454
>PRK05717 oxidoreductase; Validated
Probab=95.90 E-value=0.048 Score=46.80 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=33.7
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
++++.|.| .|.||+.+++.|...|++|.+.++++++.+.
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~ 49 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSK 49 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 78999999 5999999999999999999999987654433
No 455
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.90 E-value=0.031 Score=47.92 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=34.0
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
+++|.|.| .|.||+.+++.|...|++|.+.+|++++.+.
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~ 44 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDE 44 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 68899998 5999999999999999999999998765443
No 456
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.88 E-value=0.022 Score=53.85 Aligned_cols=65 Identities=14% Similarity=0.061 Sum_probs=45.8
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc-chh---hHHhCCCcc-CCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS-KCD---PLISLGAKY-QPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~-~~~---~~~~~g~~~-~~~~~~~~~~aDivv~~~ 135 (290)
+++|+|+|+|.-|.+.++.|...|.+|+++|.++. ... ++.+.+... ....++.+.+.|+||..-
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~Sp 77 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSP 77 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECC
Confidence 68999999999999999999999999999996532 211 233322211 122345567899988753
No 457
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.88 E-value=0.023 Score=51.53 Aligned_cols=65 Identities=28% Similarity=0.349 Sum_probs=45.3
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhC-----CCc-------cCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAK-------YQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~-------~~~~~~~~~~~aDivv~~~ 135 (290)
+|+|.|.| +|.||+.+++.|...|++|++.+|++.+...+... ++. ....+++++++.|+||-+.
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A 87 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA 87 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence 79999999 69999999999999999999988876543332210 111 1112455666788776554
No 458
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.88 E-value=0.024 Score=57.35 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=67.8
Q ss_pred CCeEEEEcccHhHHHH-HHHHHHCCCeEEEEeCCcc-chhhHHhCCCccC-CCHHHHhhcCCeEEEEeC---ChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPM-AQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQ-PSPDEVAASCDVTFAMLA---DPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~l-a~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~-~~~~~~~~~aDivv~~~p---~~~~~~~~ 144 (290)
.++|.|||.|..|.+. |+.|...|++|.++|.++. ..+.+.+.|+... ....+.+.++|+||..-. .++.....
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a 83 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSA 83 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHH
Confidence 4679999999999997 9999999999999997643 2334555666543 223355678999886532 22222222
Q ss_pred hcc------ccccccc-CCCCCEE-EEecCCChhHHHHHHHHHHHcCC
Q 022909 145 ACG------KHGAASG-MGPGKGY-VDVSTVDGDTSKLINGHIKATGA 184 (290)
Q Consensus 145 ~~~------~~~~~~~-~~~~~~l-in~s~~~~~~~~~l~~~l~~~~~ 184 (290)
... ..+++.. ++...+| |-=|.|...++.-+...|+..+.
T Consensus 84 ~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 84 KSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred HHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 100 0112222 2322343 33345556666666667776553
No 459
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=95.86 E-value=0.038 Score=53.54 Aligned_cols=66 Identities=21% Similarity=0.251 Sum_probs=46.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchh-hHHhCCC-ccCCC---HHHHhhcCCeEEEEeC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD-PLISLGA-KYQPS---PDEVAASCDVTFAMLA 136 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~-~~~~~g~-~~~~~---~~~~~~~aDivv~~~p 136 (290)
.+||||||.|..|+.+++.+.+.|++|.++|.+++... .+.+.-+ ....+ +.++.+++|+|.....
T Consensus 22 ~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 22 ETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 68999999999999999999999999999998875321 1111111 11234 4445677898866543
No 460
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.85 E-value=0.034 Score=47.72 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=34.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||..+++.|...|++|.+.+|++++.++.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAV 47 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHH
Confidence 688999996 9999999999999999999999988654443
No 461
>PRK08862 short chain dehydrogenase; Provisional
Probab=95.84 E-value=0.035 Score=47.05 Aligned_cols=40 Identities=10% Similarity=0.235 Sum_probs=34.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. +.||+++++.|...|++|.+.+|++++.++.
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~ 45 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDT 45 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 688999996 6699999999999999999999988765544
No 462
>PRK06179 short chain dehydrogenase; Provisional
Probab=95.83 E-value=0.047 Score=47.25 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=32.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccc
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSK 106 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~ 106 (290)
+++|.|.| .|.||+.+++.|.+.|++|.+.+|++++
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~ 40 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPAR 40 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence 57899998 5999999999999999999999998654
No 463
>PRK06182 short chain dehydrogenase; Validated
Probab=95.83 E-value=0.061 Score=46.70 Aligned_cols=40 Identities=23% Similarity=0.160 Sum_probs=34.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||+.+++.|...|++|++.+|++++.+.+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~ 43 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDL 43 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 588999995 9999999999999999999999987665444
No 464
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=95.82 E-value=0.049 Score=48.58 Aligned_cols=89 Identities=25% Similarity=0.287 Sum_probs=59.5
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC-CC----H-HHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-PS----P-DEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~~----~-~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
+.+|.|+|.|.+|+.+++.++..|.+|++.+++.++.+.+.+.|.... .. . ....+..|+++-++........
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~- 241 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAAAEA- 241 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHHHHHH-
Confidence 578999999999999999999999999999998877766655443211 10 0 0011347888776544333222
Q ss_pred hcccccccccCCCCCEEEEecC
Q 022909 145 ACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.++.++++..+++++.
T Consensus 242 ------~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 242 ------ALGGLRRGGRIVLVGL 257 (330)
T ss_pred ------HHHhcccCCEEEEECC
Confidence 2456777777777753
No 465
>PRK07478 short chain dehydrogenase; Provisional
Probab=95.81 E-value=0.042 Score=47.12 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=34.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||..+++.|.+.|++|++.+|++++.+.+
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~ 46 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQL 46 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 578999985 8999999999999999999999987665443
No 466
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.79 E-value=0.037 Score=47.45 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=29.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCC-----------CeEEEEeCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAG-----------CDVTVWNRT 103 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g-----------~~V~~~d~~ 103 (290)
..+|.|||+|.+|..+++.|+..| .+++++|.+
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD 54 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence 689999999999999999999763 288999875
No 467
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=95.79 E-value=0.052 Score=49.75 Aligned_cols=88 Identities=20% Similarity=0.229 Sum_probs=55.3
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc-hhhHHhCCCccC---CC---HHHHhhcCCeEEEEeCChhHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQ---PS---PDEVAASCDVTFAMLADPESAMD 143 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~---~~---~~~~~~~aDivv~~~p~~~~~~~ 143 (290)
+.+|.|.|.|.+|...++.++..|.+|++.+++.++ .+.+++.|+..+ .+ ..+.....|+|+-++..+.....
T Consensus 179 g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~~~~ 258 (375)
T PLN02178 179 GKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALLP 258 (375)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHHHHH
Confidence 689999999999999999999999999988877544 333344554321 11 11122235777777644322222
Q ss_pred HhcccccccccCCCCCEEEEec
Q 022909 144 VACGKHGAASGMGPGKGYVDVS 165 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~lin~s 165 (290)
. ++.++++..++..+
T Consensus 259 ~-------~~~l~~~G~iv~vG 273 (375)
T PLN02178 259 L-------FSLLKVSGKLVALG 273 (375)
T ss_pred H-------HHhhcCCCEEEEEc
Confidence 2 34456666666554
No 468
>PLN02740 Alcohol dehydrogenase-like
Probab=95.79 E-value=0.058 Score=49.46 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=38.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|+|.|.+|...++.++..|. +|++.++++++.+.+++.|.
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 244 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI 244 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC
Confidence 6899999999999999999999998 69999998887776666554
No 469
>PRK08017 oxidoreductase; Provisional
Probab=95.79 E-value=0.021 Score=48.88 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=36.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS 112 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~ 112 (290)
.++|.|.|. |.||+.+++.|...|++|++.+|++++.+.+.+
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNS 44 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh
Confidence 468999997 999999999999999999999998876655443
No 470
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=95.78 E-value=0.043 Score=47.08 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=33.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~ 108 (290)
++++.|.|. |.||+.+++.|.+.|++|.+.+|++++.+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~ 48 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLA 48 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 689999995 99999999999999999999999876543
No 471
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.77 E-value=0.044 Score=50.78 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=42.0
Q ss_pred CeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHh--hcCCeEEEE
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA--ASCDVTFAM 134 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~--~~aDivv~~ 134 (290)
|+|.|+|.|..|.++|+.|. .|.+|.++|..+.... ..+.|+... + ++.+ +++|+||..
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~s 61 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPS 61 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEEC
Confidence 57999999999999999999 9999999996543221 233355543 2 2233 468987765
No 472
>PRK07814 short chain dehydrogenase; Provisional
Probab=95.77 E-value=0.044 Score=47.35 Aligned_cols=40 Identities=28% Similarity=0.325 Sum_probs=34.3
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||..+++.|...|++|++.+|++++.+.+
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~ 50 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEV 50 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 689999985 7899999999999999999999987654443
No 473
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.77 E-value=0.02 Score=52.07 Aligned_cols=87 Identities=14% Similarity=0.245 Sum_probs=50.9
Q ss_pred CeEEEEcc-cHhHHHHHH-HHHHCCCe---EEEEeCCc--cchhhHHhCCCccC--CCHHHHhhcCCeEEEEeCChhHHH
Q 022909 72 GRIGFLGM-GIMGTPMAQ-NLLKAGCD---VTVWNRTK--SKCDPLISLGAKYQ--PSPDEVAASCDVTFAMLADPESAM 142 (290)
Q Consensus 72 ~~IgiiG~-G~iG~~la~-~l~~~g~~---V~~~d~~~--~~~~~~~~~g~~~~--~~~~~~~~~aDivv~~~p~~~~~~ 142 (290)
++|+|||+ |.+|+.+.+ .+....++ +..+.... .+...+........ .+. +.++++|+++.++|.. ..+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~-~~~~~~Divf~a~~~~-~s~ 79 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDI-DALKKLDIIITCQGGD-YTN 79 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCCh-hHhcCCCEEEECCCHH-HHH
Confidence 68999995 999999998 55555565 55554431 11111211111112 223 3457899999999763 444
Q ss_pred HHhcccccccccCCCC--CEEEEecC
Q 022909 143 DVACGKHGAASGMGPG--KGYVDVST 166 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~--~~lin~s~ 166 (290)
.+. . ...+.| +++||.|+
T Consensus 80 ~~~---~---~~~~aG~~~~VID~Ss 99 (369)
T PRK06598 80 EVY---P---KLRAAGWQGYWIDAAS 99 (369)
T ss_pred HHH---H---HHHhCCCCeEEEECCh
Confidence 443 1 122456 67899873
No 474
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=95.74 E-value=0.062 Score=46.33 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=35.2
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI 111 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~ 111 (290)
++++.|.|. |.||..+++.|...|++|++.+|++++.+.+.
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 47 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLR 47 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 688999985 89999999999999999999999876655543
No 475
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=95.73 E-value=0.1 Score=45.22 Aligned_cols=90 Identities=20% Similarity=0.190 Sum_probs=61.4
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCccchhhHHhCC-CccCCCHH-HHh--hcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLG-AKYQPSPD-EVA--ASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~~~~~~~~~~g-~~~~~~~~-~~~--~~aDivv~~~p~~~~~~~~~ 145 (290)
+.+|.|.|.|.+|..+.+.++..|.+ |++.++++++.+...+.| ........ +.. ...|+++.++........
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~-- 175 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPSALET-- 175 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChHHHHH--
Confidence 68899999999999999999999998 999988887766555555 11111111 111 247888887654333322
Q ss_pred cccccccccCCCCCEEEEecCC
Q 022909 146 CGKHGAASGMGPGKGYVDVSTV 167 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~ 167 (290)
.++.++++..+++++..
T Consensus 176 -----~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 176 -----ALRLLRDRGRVVLVGWY 192 (277)
T ss_pred -----HHHHhcCCcEEEEEecc
Confidence 25667888888877643
No 476
>PRK09186 flagellin modification protein A; Provisional
Probab=95.73 E-value=0.052 Score=46.46 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=34.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||+.+++.|...|++|.+.+|++++.+..
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~ 44 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNEL 44 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHH
Confidence 789999995 8999999999999999999999987665443
No 477
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=95.73 E-value=0.052 Score=46.63 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=33.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
+++|.|.|. |.||+.+++.|...|++|.+.+|+..+.+.
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~ 41 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAAN 41 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 578999985 899999999999999999999998755443
No 478
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=95.73 E-value=0.057 Score=45.89 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=57.4
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhHHHHHhcccc
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~~~~~ 149 (290)
+|.+.|-|+ ..||.++|+.|...|++|++..|+.++++++++. +.+ ..+..+.+=+...+++...+ +
T Consensus 6 ~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~-------~~~--~~~~~~~~DVtD~~~~~~~i---~ 73 (246)
T COG4221 6 GKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADE-------IGA--GAALALALDVTDRAAVEAAI---E 73 (246)
T ss_pred CcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHh-------hcc--CceEEEeeccCCHHHHHHHH---H
Confidence 566777785 7899999999999999999999999888877652 111 23344444444555666666 2
Q ss_pred cccccCCCCCEEEEecCCC
Q 022909 150 GAASGMGPGKGYVDVSTVD 168 (290)
Q Consensus 150 ~~~~~~~~~~~lin~s~~~ 168 (290)
.+.+...+=.++||.+...
T Consensus 74 ~~~~~~g~iDiLvNNAGl~ 92 (246)
T COG4221 74 ALPEEFGRIDILVNNAGLA 92 (246)
T ss_pred HHHHhhCcccEEEecCCCC
Confidence 2334444445677776433
No 479
>PRK05867 short chain dehydrogenase; Provisional
Probab=95.73 E-value=0.042 Score=47.12 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=34.8
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
++++.|.|. |.||.++++.|.+.|++|.+.+|++++.+..
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 49 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKL 49 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 688999996 8999999999999999999999987655443
No 480
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.72 E-value=0.054 Score=46.28 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=33.4
Q ss_pred CeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhH
Q 022909 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (290)
Q Consensus 72 ~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~ 110 (290)
|+|.|+| .|.+|..+++.|...|++|++.+|++++.+.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 40 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQEL 40 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 5788998 59999999999999999999999987655443
No 481
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.72 E-value=0.047 Score=49.61 Aligned_cols=73 Identities=12% Similarity=0.131 Sum_probs=54.3
Q ss_pred CCeEEEEccc----------HhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCChhH
Q 022909 71 PGRIGFLGMG----------IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPES 140 (290)
Q Consensus 71 ~~~IgiiG~G----------~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~~~ 140 (290)
+++|||+|+- .-...++++|...|.+|.+||+-..........++...++.++++++||+++++... ++
T Consensus 310 Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew-~e 388 (414)
T COG1004 310 GKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEW-DE 388 (414)
T ss_pred CcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccH-HH
Confidence 7999999963 345689999999999999999864321111112467889999999999999999754 55
Q ss_pred HHHH
Q 022909 141 AMDV 144 (290)
Q Consensus 141 ~~~~ 144 (290)
.+.+
T Consensus 389 f~~~ 392 (414)
T COG1004 389 FRDL 392 (414)
T ss_pred Hhcc
Confidence 5443
No 482
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.71 E-value=0.031 Score=49.71 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=48.8
Q ss_pred CCeEEEEcc---cHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG~---G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~ 134 (290)
+.||+++|- +++..+++..++.+|++|.++.+..-..+... .....++++++++++|+|...
T Consensus 156 g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~--~~~~~~d~~ea~~~aDvvyt~ 220 (305)
T PRK00856 156 GLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMP--EYGVHTDLDEVIEDADVVMML 220 (305)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccccc--ceEEECCHHHHhCCCCEEEEC
Confidence 789999997 58999999999999999999987543222111 135678999999999998763
No 483
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.70 E-value=0.093 Score=45.27 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=68.2
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCccchhhHHh----CCCccCCCHHHHhhcCCeEEEEeCChhHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLIS----LGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~~~~~~~~~----~g~~~~~~~~~~~~~aDivv~~~p~~~~~~~~~ 145 (290)
+++|.-+|+|. |. ++..+...|.. |+++|.++...+..++ .++.....+.+--...|+|+... .......++
T Consensus 120 ~~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani-~~~~~~~l~ 196 (250)
T PRK00517 120 GKTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANI-LANPLLELA 196 (250)
T ss_pred CCEEEEeCCcH-HH-HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcC-cHHHHHHHH
Confidence 68999999998 74 55556667764 9999999877655443 23310000000000478887654 334444554
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEe
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (290)
+++.+.++||..+|-. .......+.+.+.+.+.|.....
T Consensus 197 ---~~~~~~LkpgG~lils-gi~~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 197 ---PDLARLLKPGGRLILS-GILEEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred ---HHHHHhcCCCcEEEEE-ECcHhhHHHHHHHHHHCCCEEEE
Confidence 4567889998887743 33444566777888877766544
No 484
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=95.70 E-value=0.054 Score=46.41 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=34.1
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
++++.|.|. |.||+.+++.|...|++|.+++|+++..+.
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~ 50 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEA 50 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 789999985 999999999999999999999998765443
No 485
>PLN02214 cinnamoyl-CoA reductase
Probab=95.70 E-value=0.026 Score=51.01 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=46.5
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchh-----hHHhC---------CCccCCCHHHHhhcCCeEEEEe
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD-----PLISL---------GAKYQPSPDEVAASCDVTFAML 135 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~-----~~~~~---------g~~~~~~~~~~~~~aDivv~~~ 135 (290)
+++|.|.|. |.||+.+++.|...|++|.+.+|+.++.. .+... .+....+++++++.+|+||-+.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A 89 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHTA 89 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEec
Confidence 688999996 99999999999999999999998765321 11110 1111224566777889887765
Q ss_pred C
Q 022909 136 A 136 (290)
Q Consensus 136 p 136 (290)
.
T Consensus 90 ~ 90 (342)
T PLN02214 90 S 90 (342)
T ss_pred C
Confidence 3
No 486
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.70 E-value=0.046 Score=46.68 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=28.6
Q ss_pred eEEEEcccHhHHHHHHHHHHCCC-eEEEEeCCc
Q 022909 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (290)
Q Consensus 73 ~IgiiG~G~iG~~la~~l~~~g~-~V~~~d~~~ 104 (290)
+|.|||+|.+|..+++.|...|. ++.++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999997 788888763
No 487
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=95.69 E-value=0.055 Score=48.57 Aligned_cols=89 Identities=25% Similarity=0.322 Sum_probs=57.9
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccC-C--C---HHHHhhcCCeEEEEeCChhHHHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-P--S---PDEVAASCDVTFAMLADPESAMDV 144 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~--~---~~~~~~~aDivv~~~p~~~~~~~~ 144 (290)
+.++.|.|.|.+|..+++.++..|.+|++.++++++.+.+.+.|.... . + ..+.-...|+++.+++.......
T Consensus 170 g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~- 248 (337)
T cd05283 170 GKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASHDLDP- 248 (337)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcchHHH-
Confidence 678999999999999999999999999999988777666655543211 1 1 01112346777776654322222
Q ss_pred hcccccccccCCCCCEEEEecC
Q 022909 145 ACGKHGAASGMGPGKGYVDVST 166 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~lin~s~ 166 (290)
.++.++++..+++++.
T Consensus 249 ------~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 249 ------YLSLLKPGGTLVLVGA 264 (337)
T ss_pred ------HHHHhcCCCEEEEEec
Confidence 2345566666666643
No 488
>PRK06940 short chain dehydrogenase; Provisional
Probab=95.69 E-value=0.051 Score=47.43 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=32.7
Q ss_pred CCCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 70 ~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
|++++.|.|.|.||+++++.|. .|++|++.+|++++.+.
T Consensus 1 ~~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~ 39 (275)
T PRK06940 1 MKEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEA 39 (275)
T ss_pred CCCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHH
Confidence 3678888899999999999996 79999999998755433
No 489
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.68 E-value=0.18 Score=47.26 Aligned_cols=112 Identities=15% Similarity=0.097 Sum_probs=63.5
Q ss_pred CeEEEEcccHhHHHHHHHHHHC--CCeEEEEeCCccch--hhHHhCCCccC-C-CHHHHhhcCCeEEEEeC---ChhHHH
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKC--DPLISLGAKYQ-P-SPDEVAASCDVTFAMLA---DPESAM 142 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~--g~~V~~~d~~~~~~--~~~~~~g~~~~-~-~~~~~~~~aDivv~~~p---~~~~~~ 142 (290)
++|.|||.|..|.+.++.|... |++|.++|..+... +.+.+ |+... . ...+.+.++|+||..-. ..+...
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~~ 86 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALATPEIQ 86 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCCHHHH
Confidence 7899999999999999999987 58999999764321 23433 55442 1 12344678998876532 222232
Q ss_pred HHhcc------cccccccCCCCCEE-EEecCCChhHHHHHHHHHHHcCC
Q 022909 143 DVACG------KHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGA 184 (290)
Q Consensus 143 ~~~~~------~~~~~~~~~~~~~l-in~s~~~~~~~~~l~~~l~~~~~ 184 (290)
..... ..+++..+.+..+| |-=|.|+..+..-+...|...+.
T Consensus 87 ~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~ 135 (438)
T PRK04663 87 QVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGV 135 (438)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCC
Confidence 22110 01222222233343 33334555555666666766544
No 490
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=95.67 E-value=0.014 Score=53.75 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=33.0
Q ss_pred CCCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccc
Q 022909 70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK 106 (290)
Q Consensus 70 ~~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~ 106 (290)
.+++|.|+|. |.||+.+++.|...|++|.+.+|++.+
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~ 96 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSG 96 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence 3789999995 999999999999999999999998643
No 491
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=95.66 E-value=0.045 Score=47.02 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=34.1
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
++++.|.| .|.||..+++.|.+.|++|++.+|+.++.+.
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~ 51 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEE 51 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 68999998 5999999999999999999999998765443
No 492
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.66 E-value=0.053 Score=49.18 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=38.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCe-EEEEeCCccchhhHHhCCC
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGA 115 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~-V~~~d~~~~~~~~~~~~g~ 115 (290)
+.+|.|+|.|.+|...++.++..|.+ |++.++++++.+.+++.|.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga 222 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA 222 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence 68999999999999999999999985 8889998887776666554
No 493
>PRK10537 voltage-gated potassium channel; Provisional
Probab=95.66 E-value=0.061 Score=49.58 Aligned_cols=109 Identities=18% Similarity=0.106 Sum_probs=63.0
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCcc---CCCHHHH-----hhcCCeEEEEeCChhHHH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY---QPSPDEV-----AASCDVTFAMLADPESAM 142 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~---~~~~~~~-----~~~aDivv~~~p~~~~~~ 142 (290)
+..+-|+|+|++|+.+++.|.+.|.++.+.+.+.. +...+.+... -.+.++. +++++.|+++.+.+.+..
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~--~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl 317 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGL--EHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNA 317 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchh--hhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHH
Confidence 36699999999999999999999999998886532 2222222211 1122233 347899998887765544
Q ss_pred HHhcccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeCc
Q 022909 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 190 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~p 190 (290)
.+.. ..+.+.|+..+|-... + ++-.+.+++.|...+-.|
T Consensus 318 ~ivL----~ar~l~p~~kIIa~v~----~-~~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 318 FVVL----AAKEMSSDVKTVAAVN----D-SKNLEKIKRVHPDMIFSP 356 (393)
T ss_pred HHHH----HHHHhCCCCcEEEEEC----C-HHHHHHHHhcCCCEEECH
Confidence 4431 1344555544432212 1 122344555566554433
No 494
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.64 E-value=0.05 Score=53.66 Aligned_cols=68 Identities=24% Similarity=0.468 Sum_probs=49.6
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccc---------------------hhhHHhCCCccC--------CCH
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK---------------------CDPLISLGAKYQ--------PSP 121 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~~~ 121 (290)
+++|.|||.|..|...|..|+..|++|+++++++.. .+.+.+.|+... .+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~ 272 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDITL 272 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccCH
Confidence 689999999999999999999999999999986531 122333444321 134
Q ss_pred HHHhhcCCeEEEEeCCh
Q 022909 122 DEVAASCDVTFAMLADP 138 (290)
Q Consensus 122 ~~~~~~aDivv~~~p~~ 138 (290)
+++....|.|++++-..
T Consensus 273 ~~~~~~~DaVilAtGa~ 289 (652)
T PRK12814 273 EELQKEFDAVLLAVGAQ 289 (652)
T ss_pred HHHHhhcCEEEEEcCCC
Confidence 55555699999988643
No 495
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=95.63 E-value=0.053 Score=48.38 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=46.6
Q ss_pred CCeEEEEc-ccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHh----C-----------CCccCCCHHHHhhcCCeEEEE
Q 022909 71 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----L-----------GAKYQPSPDEVAASCDVTFAM 134 (290)
Q Consensus 71 ~~~IgiiG-~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~----~-----------g~~~~~~~~~~~~~aDivv~~ 134 (290)
+++|.|.| .|.||+.+++.|...|++|.+.+|++.+...... . .+.-..++++++++.|+|+.+
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~ 84 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFHT 84 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEEe
Confidence 68999999 5999999999999999999988887654322111 0 111223456677788988776
Q ss_pred eC
Q 022909 135 LA 136 (290)
Q Consensus 135 ~p 136 (290)
..
T Consensus 85 A~ 86 (325)
T PLN02989 85 AS 86 (325)
T ss_pred CC
Confidence 53
No 496
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.61 E-value=0.019 Score=52.73 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=33.2
Q ss_pred CCCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCcc
Q 022909 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 105 (290)
Q Consensus 70 ~~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~ 105 (290)
+.++|.|||.|..|.++|..|+..|++|+++++++.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 368999999999999999999999999999998764
No 497
>PRK07109 short chain dehydrogenase; Provisional
Probab=95.61 E-value=0.061 Score=48.48 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=34.0
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchhh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~~ 109 (290)
+++|.|.|. |.||+.+++.|.+.|++|.+.+|++++.+.
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~ 47 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEA 47 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 578999985 999999999999999999999998765544
No 498
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.61 E-value=0.023 Score=50.30 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=26.8
Q ss_pred CeEEEEcccHhHHHHHHHHHHCC--CeEEEEeC
Q 022909 72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNR 102 (290)
Q Consensus 72 ~~IgiiG~G~iG~~la~~l~~~g--~~V~~~d~ 102 (290)
.||||=|+|+||+.+++.+...+ ++|.+.+-
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd 34 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAIND 34 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEec
Confidence 68999999999999999999875 78776654
No 499
>PRK08589 short chain dehydrogenase; Validated
Probab=95.61 E-value=0.067 Score=46.49 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=32.4
Q ss_pred CCeEEEEcc-cHhHHHHHHHHHHCCCeEEEEeCCccchh
Q 022909 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (290)
Q Consensus 71 ~~~IgiiG~-G~iG~~la~~l~~~g~~V~~~d~~~~~~~ 108 (290)
++++.|.|. |.||+++++.|...|++|++.+|+ ++.+
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~ 43 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVS 43 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHH
Confidence 688999986 899999999999999999999998 4433
No 500
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=95.60 E-value=0.17 Score=37.82 Aligned_cols=99 Identities=10% Similarity=0.068 Sum_probs=64.1
Q ss_pred CCeEEEEcccHhHHHHHHHHHHCCCeEEEEeCCccchhhHHhCCCccCCCHHHHhhcCCeEEEEeCCh-----hHHHHHh
Q 022909 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP-----ESAMDVA 145 (290)
Q Consensus 71 ~~~IgiiG~G~iG~~la~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivv~~~p~~-----~~~~~~~ 145 (290)
-+||.|+|-|.++..+.+.+++.|+++.+.+.++++.. . -...+|-++.--|.+ ...+.++
T Consensus 2 ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s------------~--~~~~ad~~~~~~~~~~~~~yl~~e~I~ 67 (110)
T PF00289_consen 2 IKKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVS------------T--HVDMADEAYFEPPGPSPESYLNIEAII 67 (110)
T ss_dssp SSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTG------------H--HHHHSSEEEEEESSSGGGTTTSHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCcceeccCchhccc------------c--cccccccceecCcchhhhhhccHHHHh
Confidence 48999999999999999999999999887776665321 1 134566665442222 1222222
Q ss_pred cccccccccCCCCCEEEEecCCChhHHHHHHHHHHHcCCcEEeC
Q 022909 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 189 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~lin~s~~~~~~~~~l~~~l~~~~~~~~~~ 189 (290)
. +. .+.+...+.-+-+......++.+.+.+.|+.|++.
T Consensus 68 ~----ia--~~~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp 105 (110)
T PF00289_consen 68 D----IA--RKEGADAIHPGYGFLSENAEFAEACEDAGIIFIGP 105 (110)
T ss_dssp H----HH--HHTTESEEESTSSTTTTHHHHHHHHHHTT-EESSS
T ss_pred h----Hh--hhhcCcccccccchhHHHHHHHHHHHHCCCEEECc
Confidence 0 01 12255556666777777888999998889988764
Done!