Query 022910
Match_columns 290
No_of_seqs 590 out of 3556
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 07:02:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 2.8E-47 6.1E-52 299.3 18.3 235 53-290 206-442 (459)
2 KOG0271 Notchless-like WD40 re 100.0 3.9E-46 8.5E-51 289.8 22.8 234 53-290 104-463 (480)
3 KOG0296 Angio-associated migra 100.0 9E-43 2E-47 269.4 28.8 275 14-290 14-380 (399)
4 KOG0272 U4/U6 small nuclear ri 100.0 3.8E-44 8.2E-49 281.7 18.0 225 61-289 172-398 (459)
5 KOG0263 Transcription initiati 100.0 6.3E-43 1.4E-47 293.9 24.6 232 53-288 440-695 (707)
6 KOG0286 G-protein beta subunit 100.0 1.3E-41 2.8E-46 256.1 28.0 236 52-290 43-327 (343)
7 KOG0279 G protein beta subunit 100.0 3.1E-41 6.6E-46 252.5 26.6 232 54-289 5-244 (315)
8 KOG0279 G protein beta subunit 100.0 5.8E-41 1.3E-45 251.0 24.6 235 50-290 49-295 (315)
9 KOG0263 Transcription initiati 100.0 1.1E-41 2.3E-46 286.5 22.5 234 53-290 367-631 (707)
10 KOG0285 Pleiotropic regulator 100.0 9.7E-40 2.1E-44 252.3 20.6 236 50-290 137-372 (460)
11 KOG0282 mRNA splicing factor [ 100.0 7.9E-40 1.7E-44 261.4 15.9 237 52-290 202-486 (503)
12 KOG0315 G-protein beta subunit 100.0 3.3E-37 7.2E-42 227.6 26.9 229 54-287 73-309 (311)
13 KOG0295 WD40 repeat-containing 100.0 2.4E-38 5.2E-43 244.9 19.8 233 53-289 139-387 (406)
14 KOG0284 Polyadenylation factor 100.0 2E-39 4.3E-44 254.2 13.6 231 56-290 130-362 (464)
15 KOG0284 Polyadenylation factor 100.0 1.9E-39 4.2E-44 254.3 12.6 221 64-288 96-316 (464)
16 KOG0273 Beta-transducin family 100.0 8.9E-37 1.9E-41 243.3 25.4 233 52-290 264-505 (524)
17 KOG0266 WD40 repeat-containing 100.0 1.2E-36 2.7E-41 259.9 27.2 233 56-289 195-433 (456)
18 KOG0273 Beta-transducin family 100.0 1.6E-36 3.5E-41 241.9 24.5 221 64-290 235-464 (524)
19 KOG0265 U5 snRNP-specific prot 100.0 1.4E-36 3.1E-41 229.7 23.0 236 53-290 36-320 (338)
20 KOG0316 Conserved WD40 repeat- 100.0 1.2E-36 2.6E-41 223.1 21.8 238 50-289 3-281 (307)
21 KOG0295 WD40 repeat-containing 100.0 3.1E-37 6.7E-42 238.7 18.3 235 52-290 96-346 (406)
22 KOG0266 WD40 repeat-containing 100.0 8.3E-36 1.8E-40 254.8 28.9 223 57-281 151-379 (456)
23 PTZ00421 coronin; Provisional 100.0 4E-35 8.6E-40 250.1 32.1 231 58-289 69-314 (493)
24 KOG0286 G-protein beta subunit 100.0 8.6E-36 1.9E-40 224.8 24.2 206 54-264 135-343 (343)
25 cd00200 WD40 WD40 domain, foun 100.0 5.1E-35 1.1E-39 236.1 30.5 230 57-290 2-231 (289)
26 KOG0772 Uncharacterized conser 100.0 1.8E-36 3.9E-41 244.2 21.3 239 49-289 152-468 (641)
27 KOG0315 G-protein beta subunit 100.0 2.2E-35 4.7E-40 218.0 25.2 235 53-290 29-270 (311)
28 KOG0645 WD40 repeat protein [G 100.0 1.2E-34 2.6E-39 216.4 27.5 226 54-287 4-242 (312)
29 KOG0271 Notchless-like WD40 re 100.0 1.4E-36 3.1E-41 236.7 17.6 207 53-264 236-479 (480)
30 KOG0291 WD40-repeat-containing 100.0 7.6E-35 1.7E-39 244.2 26.9 230 56-290 342-594 (893)
31 KOG0291 WD40-repeat-containing 100.0 1E-34 2.2E-39 243.5 27.3 230 58-290 259-490 (893)
32 KOG0318 WD40 repeat stress pro 100.0 1.9E-34 4.1E-39 233.0 27.7 237 52-290 178-542 (603)
33 KOG0276 Vesicle coat complex C 100.0 2.2E-35 4.8E-40 242.9 20.2 231 55-289 4-238 (794)
34 cd00200 WD40 WD40 domain, foun 100.0 1.8E-33 3.9E-38 227.0 31.3 231 56-290 43-273 (289)
35 PTZ00420 coronin; Provisional 100.0 2.4E-33 5.1E-38 240.6 32.8 232 55-289 65-317 (568)
36 KOG0281 Beta-TrCP (transducin 100.0 1.3E-36 2.8E-41 234.6 10.8 222 52-287 225-458 (499)
37 KOG0319 WD40-repeat-containing 100.0 5.7E-35 1.2E-39 244.3 21.5 235 52-290 353-601 (775)
38 KOG0285 Pleiotropic regulator 100.0 4.9E-34 1.1E-38 220.9 18.5 189 99-290 143-331 (460)
39 KOG0276 Vesicle coat complex C 100.0 8.6E-34 1.9E-38 233.6 20.6 229 56-288 47-279 (794)
40 KOG0293 WD40 repeat-containing 100.0 1.7E-33 3.7E-38 221.5 20.4 239 49-289 209-493 (519)
41 KOG0296 Angio-associated migra 100.0 2.3E-32 5E-37 211.9 26.3 209 53-266 95-398 (399)
42 KOG0292 Vesicle coat complex C 100.0 3.4E-33 7.5E-38 238.0 23.1 233 55-289 42-303 (1202)
43 KOG0313 Microtubule binding pr 100.0 9.3E-33 2E-37 215.1 22.9 237 51-289 131-400 (423)
44 PLN00181 protein SPA1-RELATED; 100.0 7.2E-32 1.6E-36 246.2 32.6 224 60-290 479-720 (793)
45 PLN00181 protein SPA1-RELATED; 100.0 9.2E-32 2E-36 245.6 32.9 222 64-290 532-775 (793)
46 KOG0292 Vesicle coat complex C 100.0 1.4E-33 3.1E-38 240.4 18.6 231 58-289 3-261 (1202)
47 KOG0277 Peroxisomal targeting 100.0 2.1E-33 4.5E-38 208.1 17.1 223 63-288 59-288 (311)
48 KOG0281 Beta-TrCP (transducin 100.0 7.7E-35 1.7E-39 224.7 9.9 212 63-288 196-410 (499)
49 KOG0643 Translation initiation 100.0 6.2E-32 1.3E-36 201.7 24.7 226 58-288 4-241 (327)
50 KOG0275 Conserved WD40 repeat- 100.0 6E-34 1.3E-38 218.2 13.4 236 53-289 201-490 (508)
51 KOG0645 WD40 repeat protein [G 100.0 9.1E-32 2E-36 201.1 23.4 219 61-289 58-291 (312)
52 KOG0640 mRNA cleavage stimulat 100.0 2.6E-32 5.7E-37 207.8 19.6 225 51-277 99-346 (430)
53 KOG1446 Histone H3 (Lys4) meth 100.0 9.2E-31 2E-35 199.8 28.0 234 55-289 5-286 (311)
54 KOG0319 WD40-repeat-containing 100.0 1E-32 2.2E-37 231.0 18.7 210 54-266 401-619 (775)
55 KOG0274 Cdc4 and related F-box 100.0 7.9E-32 1.7E-36 230.4 24.5 225 52-287 236-463 (537)
56 KOG0283 WD40 repeat-containing 100.0 3.9E-32 8.5E-37 230.8 22.4 229 58-290 260-558 (712)
57 KOG0310 Conserved WD40 repeat- 100.0 4.7E-32 1E-36 217.3 21.4 226 59-290 63-291 (487)
58 KOG0305 Anaphase promoting com 100.0 1.5E-31 3.4E-36 221.3 23.8 221 63-290 216-443 (484)
59 KOG0647 mRNA export protein (c 100.0 2.1E-31 4.6E-36 201.9 22.3 228 62-290 25-305 (347)
60 KOG1407 WD40 repeat protein [F 100.0 4.2E-31 9E-36 196.6 23.0 227 57-289 57-283 (313)
61 KOG0318 WD40 repeat stress pro 100.0 1.6E-30 3.5E-35 210.4 28.3 231 53-288 136-373 (603)
62 KOG0289 mRNA splicing factor [ 100.0 2.8E-31 6E-36 210.2 23.0 233 53-288 250-486 (506)
63 KOG0277 Peroxisomal targeting 100.0 3.1E-32 6.7E-37 201.9 15.4 213 50-265 90-308 (311)
64 KOG0278 Serine/threonine kinas 100.0 2.6E-32 5.6E-37 202.0 14.8 232 51-290 46-279 (334)
65 KOG0643 Translation initiation 100.0 1.1E-30 2.4E-35 195.0 23.3 232 53-290 41-299 (327)
66 KOG0282 mRNA splicing factor [ 100.0 1.6E-32 3.4E-37 219.8 14.4 207 53-264 247-503 (503)
67 KOG1407 WD40 repeat protein [F 100.0 6.5E-31 1.4E-35 195.6 20.6 227 58-290 14-243 (313)
68 KOG0264 Nucleosome remodeling 100.0 1.2E-30 2.6E-35 207.6 23.1 232 56-290 116-385 (422)
69 PTZ00421 coronin; Provisional 100.0 1E-29 2.2E-34 217.0 30.3 223 64-290 20-271 (493)
70 KOG0294 WD40 repeat-containing 100.0 4.6E-30 1E-34 195.8 24.7 229 50-286 29-305 (362)
71 KOG0288 WD40 repeat protein Ti 100.0 4.9E-31 1.1E-35 207.5 19.0 232 54-290 209-443 (459)
72 KOG0306 WD40-repeat-containing 100.0 2.6E-30 5.7E-35 217.0 22.8 230 54-290 404-646 (888)
73 KOG0646 WD40 repeat protein [G 100.0 2.6E-30 5.6E-35 206.3 21.1 221 63-288 80-329 (476)
74 KOG0283 WD40 repeat-containing 100.0 2.5E-30 5.5E-35 219.8 21.3 213 50-267 355-577 (712)
75 KOG0308 Conserved WD40 repeat- 100.0 6.6E-31 1.4E-35 217.4 16.8 225 62-289 19-266 (735)
76 KOG0289 mRNA splicing factor [ 100.0 7.6E-30 1.7E-34 202.1 21.7 222 65-290 220-444 (506)
77 KOG0310 Conserved WD40 repeat- 100.0 2.6E-30 5.6E-35 207.4 19.2 221 64-290 26-250 (487)
78 KOG0973 Histone transcription 100.0 1.1E-29 2.4E-34 221.1 24.0 234 53-290 58-337 (942)
79 KOG0641 WD40 repeat protein [G 100.0 3E-28 6.4E-33 178.4 27.4 226 62-289 30-284 (350)
80 KOG0267 Microtubule severing p 100.0 7.8E-32 1.7E-36 225.3 9.8 230 57-290 21-250 (825)
81 KOG0299 U3 snoRNP-associated p 100.0 1.5E-29 3.3E-34 201.6 22.1 226 61-290 199-437 (479)
82 KOG0265 U5 snRNP-specific prot 100.0 7.8E-30 1.7E-34 193.3 18.7 188 99-290 39-228 (338)
83 KOG0641 WD40 repeat protein [G 100.0 4.9E-28 1.1E-32 177.2 26.5 229 57-290 82-331 (350)
84 PTZ00420 coronin; Provisional 100.0 2.7E-28 5.7E-33 209.6 29.5 189 83-275 50-258 (568)
85 KOG0973 Histone transcription 100.0 3E-29 6.4E-34 218.5 23.3 228 61-289 10-276 (942)
86 KOG0316 Conserved WD40 repeat- 100.0 2.2E-29 4.8E-34 185.0 18.4 185 99-290 9-195 (307)
87 KOG1036 Mitotic spindle checkp 100.0 8.7E-29 1.9E-33 188.3 21.6 220 64-290 13-286 (323)
88 KOG0278 Serine/threonine kinas 100.0 1.3E-29 2.7E-34 187.8 16.5 202 63-271 99-302 (334)
89 KOG0313 Microtubule binding pr 100.0 3.6E-29 7.8E-34 195.1 19.7 203 56-265 185-417 (423)
90 KOG0269 WD40 repeat-containing 100.0 3E-30 6.5E-35 217.3 14.4 219 66-288 89-319 (839)
91 KOG0306 WD40-repeat-containing 100.0 1.1E-28 2.3E-33 207.5 22.8 226 57-289 366-603 (888)
92 KOG0274 Cdc4 and related F-box 100.0 1.5E-28 3.2E-33 210.4 23.4 218 58-286 201-421 (537)
93 KOG0264 Nucleosome remodeling 100.0 6.7E-29 1.5E-33 197.7 19.1 213 54-266 167-404 (422)
94 KOG0293 WD40 repeat-containing 100.0 8.3E-29 1.8E-33 195.2 18.6 209 54-266 259-513 (519)
95 KOG0640 mRNA cleavage stimulat 100.0 9.5E-29 2.1E-33 188.5 16.8 236 54-290 162-408 (430)
96 KOG0300 WD40 repeat-containing 100.0 1.9E-28 4.1E-33 187.6 18.0 232 52-289 178-455 (481)
97 KOG2096 WD40 repeat protein [G 100.0 4.3E-28 9.3E-33 185.5 19.8 234 54-290 76-385 (420)
98 KOG0300 WD40 repeat-containing 100.0 1E-28 2.2E-33 189.1 16.4 227 56-287 140-407 (481)
99 KOG0302 Ribosome Assembly prot 100.0 3.3E-28 7.2E-33 189.7 18.8 212 54-266 141-378 (440)
100 KOG0275 Conserved WD40 repeat- 100.0 1.8E-29 4E-34 193.7 10.6 208 53-264 252-507 (508)
101 KOG0268 Sof1-like rRNA process 100.0 5E-29 1.1E-33 193.4 12.7 228 53-290 55-284 (433)
102 KOG4283 Transcription-coupled 100.0 2E-27 4.4E-32 180.1 20.9 213 56-269 35-279 (397)
103 KOG0308 Conserved WD40 repeat- 100.0 1.9E-28 4.1E-33 202.9 16.5 209 56-268 65-287 (735)
104 KOG0305 Anaphase promoting com 100.0 2.1E-27 4.6E-32 196.9 22.0 209 53-268 248-463 (484)
105 KOG1332 Vesicle coat complex C 100.0 3.7E-28 8.1E-33 179.4 15.3 230 57-290 4-268 (299)
106 KOG0299 U3 snoRNP-associated p 100.0 4.2E-27 9.1E-32 187.8 21.7 226 57-288 135-390 (479)
107 KOG1273 WD40 repeat protein [G 100.0 2.5E-27 5.4E-32 181.1 19.0 232 52-288 13-303 (405)
108 KOG0267 Microtubule severing p 100.0 4.7E-29 1E-33 208.7 10.3 201 54-258 60-260 (825)
109 KOG1332 Vesicle coat complex C 100.0 2.6E-27 5.6E-32 175.0 17.3 215 52-266 44-286 (299)
110 KOG0772 Uncharacterized conser 100.0 1.9E-27 4.2E-32 192.3 15.7 201 61-264 265-485 (641)
111 KOG1274 WD40 repeat protein [G 100.0 3.4E-26 7.3E-31 196.3 24.1 220 63-290 55-282 (933)
112 KOG2055 WD40 repeat protein [G 100.0 1.1E-25 2.3E-30 179.9 24.5 223 64-290 213-447 (514)
113 KOG1446 Histone H3 (Lys4) meth 100.0 1.5E-25 3.3E-30 171.4 23.8 207 53-266 89-303 (311)
114 KOG0288 WD40 repeat protein Ti 100.0 1.2E-27 2.6E-32 188.5 12.1 235 48-290 159-399 (459)
115 KOG4378 Nuclear protein COP1 [ 99.9 1.6E-26 3.5E-31 186.3 18.0 219 66-289 81-304 (673)
116 KOG0301 Phospholipase A2-activ 99.9 6.5E-26 1.4E-30 189.2 21.9 226 52-290 45-271 (745)
117 KOG0301 Phospholipase A2-activ 99.9 1.1E-25 2.3E-30 188.0 20.3 201 51-266 88-288 (745)
118 KOG1408 WD40 repeat protein [F 99.9 5.3E-26 1.1E-30 190.7 18.2 230 59-289 454-694 (1080)
119 KOG0639 Transducin-like enhanc 99.9 5.6E-26 1.2E-30 183.5 16.7 222 62-290 417-645 (705)
120 KOG0269 WD40 repeat-containing 99.9 2E-26 4.4E-31 194.4 14.7 212 53-268 122-342 (839)
121 KOG0302 Ribosome Assembly prot 99.9 2.4E-25 5.2E-30 173.9 19.5 209 50-259 197-432 (440)
122 KOG1539 WD repeat protein [Gen 99.9 5.9E-25 1.3E-29 187.0 23.4 178 108-290 449-629 (910)
123 KOG1274 WD40 repeat protein [G 99.9 1E-24 2.2E-29 187.3 25.0 227 61-290 10-244 (933)
124 KOG2048 WD40 repeat protein [G 99.9 2E-24 4.4E-29 180.0 25.6 234 54-290 15-257 (691)
125 KOG4328 WD40 protein [Function 99.9 1E-25 2.2E-30 179.9 17.1 232 56-289 178-431 (498)
126 KOG0294 WD40 repeat-containing 99.9 9.3E-25 2E-29 166.9 21.4 205 79-286 3-257 (362)
127 KOG2445 Nuclear pore complex c 99.9 4.3E-24 9.3E-29 162.9 24.6 229 59-289 8-299 (361)
128 KOG0270 WD40 repeat-containing 99.9 9.8E-26 2.1E-30 179.3 16.0 209 62-272 241-455 (463)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.4E-23 5.2E-28 170.1 30.5 225 56-288 65-300 (300)
130 KOG0270 WD40 repeat-containing 99.9 1.1E-24 2.4E-29 173.3 21.0 197 68-267 177-405 (463)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.6E-23 1E-27 168.4 30.8 232 54-290 21-260 (300)
132 KOG0646 WD40 repeat protein [G 99.9 1.5E-24 3.2E-29 173.6 20.4 208 79-290 53-289 (476)
133 KOG0650 WD40 repeat nucleolar 99.9 8E-25 1.7E-29 180.2 18.3 235 49-289 385-716 (733)
134 KOG0321 WD40 repeat-containing 99.9 8.8E-25 1.9E-29 181.0 18.2 232 56-289 92-371 (720)
135 KOG0303 Actin-binding protein 99.9 3.3E-24 7.2E-29 168.5 20.2 214 55-270 72-298 (472)
136 KOG0268 Sof1-like rRNA process 99.9 2.9E-25 6.3E-30 172.6 13.2 213 53-271 98-350 (433)
137 KOG0639 Transducin-like enhanc 99.9 4E-25 8.6E-30 178.7 14.5 219 64-289 465-685 (705)
138 KOG2055 WD40 repeat protein [G 99.9 4.6E-24 1E-28 170.7 19.6 230 60-290 253-494 (514)
139 KOG1539 WD repeat protein [Gen 99.9 6.5E-24 1.4E-28 180.7 20.2 198 64-267 448-649 (910)
140 KOG0307 Vesicle coat complex C 99.9 1.7E-24 3.7E-29 190.0 13.9 222 65-289 65-307 (1049)
141 KOG2919 Guanine nucleotide-bin 99.9 2.3E-23 4.9E-28 160.0 18.2 222 65-288 105-350 (406)
142 KOG2106 Uncharacterized conser 99.9 6.9E-22 1.5E-26 160.1 26.5 216 64-290 246-503 (626)
143 KOG1445 Tumor-specific antigen 99.9 4.5E-24 9.8E-29 177.2 14.2 127 54-180 69-201 (1012)
144 KOG0647 mRNA export protein (c 99.9 7.2E-23 1.6E-27 155.8 19.0 193 58-255 66-312 (347)
145 KOG0642 Cell-cycle nuclear pro 99.9 2.2E-23 4.8E-28 170.6 17.3 221 54-278 284-573 (577)
146 KOG4283 Transcription-coupled 99.9 7.6E-23 1.7E-27 155.4 17.2 167 58-225 95-280 (397)
147 KOG2048 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 163.7 24.6 230 53-288 57-301 (691)
148 KOG2445 Nuclear pore complex c 99.9 9.7E-22 2.1E-26 150.1 21.5 225 51-276 46-331 (361)
149 KOG4328 WD40 protein [Function 99.9 1.5E-22 3.3E-27 161.9 17.9 236 53-288 223-474 (498)
150 KOG2106 Uncharacterized conser 99.9 6.4E-21 1.4E-25 154.5 26.6 218 62-290 198-459 (626)
151 KOG1408 WD40 repeat protein [F 99.9 1.2E-22 2.5E-27 170.8 17.2 211 54-267 491-714 (1080)
152 KOG0307 Vesicle coat complex C 99.9 2.4E-23 5.2E-28 182.9 12.4 215 52-269 104-330 (1049)
153 KOG1007 WD repeat protein TSSC 99.9 5.9E-22 1.3E-26 150.1 17.7 228 56-288 55-340 (370)
154 KOG0322 G-protein beta subunit 99.9 1.7E-22 3.8E-27 151.1 13.7 235 52-289 2-304 (323)
155 KOG1034 Transcriptional repres 99.9 3.2E-22 7E-27 154.0 14.9 226 63-290 88-365 (385)
156 KOG1034 Transcriptional repres 99.9 1.1E-22 2.4E-27 156.5 12.0 212 53-266 124-383 (385)
157 KOG1036 Mitotic spindle checkp 99.9 2.6E-21 5.7E-26 147.8 19.2 199 51-256 81-294 (323)
158 KOG0644 Uncharacterized conser 99.9 3E-23 6.5E-28 176.8 8.3 227 56-290 182-450 (1113)
159 KOG1063 RNA polymerase II elon 99.9 1.9E-21 4.2E-26 162.8 18.5 234 54-288 351-674 (764)
160 KOG1063 RNA polymerase II elon 99.9 1.3E-21 2.9E-26 163.7 17.4 212 54-266 515-763 (764)
161 KOG2096 WD40 repeat protein [G 99.9 4.8E-21 1E-25 147.1 18.7 201 59-265 182-401 (420)
162 KOG1273 WD40 repeat protein [G 99.9 3.4E-21 7.3E-26 147.7 17.2 179 110-290 26-208 (405)
163 KOG0649 WD40 repeat protein [G 99.9 4.8E-20 1E-24 136.8 21.8 215 65-287 11-255 (325)
164 KOG1523 Actin-related protein 99.9 1.7E-20 3.7E-25 144.1 20.0 225 58-286 4-257 (361)
165 PRK01742 tolB translocation pr 99.9 1.8E-20 3.9E-25 160.0 21.7 222 54-289 193-426 (429)
166 COG2319 FOG: WD40 repeat [Gene 99.9 5.2E-19 1.1E-23 150.4 30.5 227 58-289 59-295 (466)
167 KOG1009 Chromatin assembly com 99.9 7.5E-21 1.6E-25 150.2 16.9 215 52-270 53-376 (434)
168 KOG4378 Nuclear protein COP1 [ 99.9 2.7E-21 5.9E-26 156.4 14.4 221 67-290 37-262 (673)
169 KOG1009 Chromatin assembly com 99.9 1.8E-20 3.9E-25 148.1 18.2 226 63-288 12-292 (434)
170 COG2319 FOG: WD40 repeat [Gene 99.9 1.2E-18 2.7E-23 148.1 31.3 227 56-286 100-336 (466)
171 KOG0771 Prolactin regulatory e 99.9 7.2E-21 1.6E-25 151.0 15.8 196 68-267 148-355 (398)
172 KOG1007 WD repeat protein TSSC 99.9 2.7E-20 5.8E-25 141.3 18.0 213 52-267 110-362 (370)
173 KOG0321 WD40 repeat-containing 99.9 2.1E-20 4.6E-25 155.3 16.8 199 70-268 55-303 (720)
174 KOG0290 Conserved WD40 repeat- 99.9 3.6E-20 7.8E-25 140.6 16.5 223 61-289 93-346 (364)
175 KOG0642 Cell-cycle nuclear pro 99.9 3.4E-20 7.3E-25 152.1 16.3 189 101-290 288-543 (577)
176 KOG1188 WD40 repeat protein [G 99.9 4.1E-20 8.8E-25 143.2 15.8 197 78-274 41-250 (376)
177 KOG1310 WD40 repeat protein [G 99.9 1.4E-20 3.1E-25 154.1 13.6 220 54-274 40-311 (758)
178 KOG1538 Uncharacterized conser 99.8 7.7E-19 1.7E-23 147.2 23.5 218 66-290 14-275 (1081)
179 KOG0303 Actin-binding protein 99.8 1.2E-19 2.6E-24 143.0 17.3 162 103-267 77-250 (472)
180 KOG2110 Uncharacterized conser 99.8 2.7E-18 5.8E-23 134.5 24.2 195 66-268 48-250 (391)
181 KOG1587 Cytoplasmic dynein int 99.8 1.9E-19 4.2E-24 153.7 19.2 203 64-267 242-517 (555)
182 KOG1524 WD40 repeat-containing 99.8 6.2E-20 1.3E-24 150.0 15.3 193 78-290 76-268 (737)
183 KOG1538 Uncharacterized conser 99.8 7.6E-19 1.6E-23 147.2 21.7 209 52-267 41-294 (1081)
184 PRK03629 tolB translocation pr 99.8 4.3E-18 9.4E-23 145.1 26.4 226 54-289 188-428 (429)
185 KOG2919 Guanine nucleotide-bin 99.8 1.1E-18 2.3E-23 134.5 20.3 208 67-279 52-295 (406)
186 KOG2110 Uncharacterized conser 99.8 1.5E-17 3.2E-22 130.4 26.2 209 65-277 88-343 (391)
187 KOG0650 WD40 repeat nucleolar 99.8 1.2E-19 2.5E-24 150.1 14.8 205 57-263 514-732 (733)
188 KOG0649 WD40 repeat protein [G 99.8 1.2E-17 2.6E-22 124.1 23.5 200 54-266 52-274 (325)
189 KOG0771 Prolactin regulatory e 99.8 1.5E-19 3.2E-24 143.6 14.4 178 111-289 148-335 (398)
190 KOG1272 WD40-repeat-containing 99.8 2.1E-20 4.5E-25 150.1 9.1 214 66-288 131-344 (545)
191 KOG4227 WD40 repeat protein [G 99.8 1E-18 2.2E-23 138.0 18.1 234 54-289 46-368 (609)
192 KOG1445 Tumor-specific antigen 99.8 8.1E-20 1.7E-24 152.2 12.3 203 65-269 628-847 (1012)
193 PRK04922 tolB translocation pr 99.8 9.5E-18 2.1E-22 143.6 24.8 225 54-288 193-432 (433)
194 KOG0290 Conserved WD40 repeat- 99.8 1.6E-18 3.4E-23 131.8 17.0 199 62-262 148-361 (364)
195 KOG2394 WD40 protein DMR-N9 [G 99.8 9.1E-19 2E-23 143.2 15.2 138 64-201 219-384 (636)
196 KOG1524 WD40 repeat-containing 99.8 9.6E-19 2.1E-23 143.1 14.9 219 62-289 12-238 (737)
197 KOG1523 Actin-related protein 99.8 1.5E-18 3.3E-23 133.5 15.0 186 105-290 8-218 (361)
198 PRK11028 6-phosphogluconolacto 99.8 8.3E-17 1.8E-21 133.4 26.1 230 56-290 27-285 (330)
199 PRK02889 tolB translocation pr 99.8 2.4E-17 5.2E-22 140.7 23.4 225 54-288 185-424 (427)
200 KOG3881 Uncharacterized conser 99.8 1.8E-17 3.8E-22 130.8 20.3 225 56-288 97-341 (412)
201 KOG2394 WD40 protein DMR-N9 [G 99.8 3.7E-18 8.1E-23 139.6 16.7 198 87-288 144-384 (636)
202 KOG0322 G-protein beta subunit 99.8 4.8E-18 1E-22 127.5 15.0 206 55-265 46-322 (323)
203 KOG1963 WD40 repeat protein [G 99.8 4E-17 8.7E-22 140.6 22.6 222 53-275 46-384 (792)
204 PRK05137 tolB translocation pr 99.8 1.6E-16 3.5E-21 136.2 26.4 225 53-288 190-432 (435)
205 KOG1188 WD40 repeat protein [G 99.8 2.9E-18 6.4E-23 132.9 13.4 168 120-289 41-222 (376)
206 KOG2139 WD40 repeat protein [G 99.8 2.4E-16 5.2E-21 123.4 23.7 203 63-268 139-385 (445)
207 PRK11028 6-phosphogluconolacto 99.8 2.8E-16 6.2E-21 130.2 25.7 219 66-286 81-327 (330)
208 KOG1963 WD40 repeat protein [G 99.8 7.6E-17 1.7E-21 138.9 22.6 227 62-290 203-521 (792)
209 PF08662 eIF2A: Eukaryotic tra 99.8 1.1E-16 2.4E-21 121.4 21.0 156 111-275 9-187 (194)
210 KOG2321 WD40 repeat protein [G 99.8 4.6E-17 1E-21 134.3 19.2 224 62-289 49-324 (703)
211 KOG1517 Guanine nucleotide bin 99.8 7.4E-17 1.6E-21 141.6 19.5 223 65-289 1110-1362(1387)
212 KOG2139 WD40 repeat protein [G 99.8 2.7E-16 5.8E-21 123.2 20.4 193 64-265 98-308 (445)
213 PRK01742 tolB translocation pr 99.8 9.5E-17 2.1E-21 137.2 19.0 193 86-290 183-383 (429)
214 PRK05137 tolB translocation pr 99.8 1.3E-15 2.9E-20 130.6 25.1 194 88-290 183-388 (435)
215 KOG1310 WD40 repeat protein [G 99.7 9.2E-18 2E-22 137.8 11.0 167 99-265 42-230 (758)
216 KOG4227 WD40 repeat protein [G 99.7 5E-17 1.1E-21 128.6 14.5 167 101-268 50-227 (609)
217 KOG3881 Uncharacterized conser 99.7 2.1E-16 4.6E-21 124.8 17.9 179 65-247 149-342 (412)
218 KOG1272 WD40-repeat-containing 99.7 1.4E-18 3.1E-23 139.7 5.8 213 67-289 173-390 (545)
219 PF08662 eIF2A: Eukaryotic tra 99.7 1E-15 2.2E-20 116.1 20.6 156 68-229 9-186 (194)
220 KOG2111 Uncharacterized conser 99.7 2.8E-15 6.2E-20 115.6 22.7 176 87-267 75-257 (346)
221 KOG1240 Protein kinase contain 99.7 7.2E-16 1.6E-20 137.3 22.0 225 50-276 1034-1283(1431)
222 PRK00178 tolB translocation pr 99.7 5.3E-15 1.1E-19 127.0 26.4 226 54-288 188-427 (430)
223 TIGR02800 propeller_TolB tol-p 99.7 4E-15 8.8E-20 127.4 25.3 223 55-287 180-417 (417)
224 PRK01029 tolB translocation pr 99.7 1.1E-14 2.4E-19 123.9 27.5 227 57-289 177-425 (428)
225 KOG1587 Cytoplasmic dynein int 99.7 1.9E-15 4E-20 129.5 22.1 202 87-289 222-452 (555)
226 PRK02889 tolB translocation pr 99.7 2.3E-15 5E-20 128.6 22.6 195 87-290 176-382 (427)
227 PRK04922 tolB translocation pr 99.7 2.2E-15 4.7E-20 129.1 22.3 195 87-290 184-390 (433)
228 KOG0644 Uncharacterized conser 99.7 2.2E-18 4.7E-23 147.6 3.1 188 98-289 181-406 (1113)
229 PRK04792 tolB translocation pr 99.7 1.4E-14 3E-19 124.3 25.2 224 57-289 210-447 (448)
230 PRK03629 tolB translocation pr 99.7 2.3E-14 5.1E-19 122.4 25.8 194 88-290 180-385 (429)
231 KOG1334 WD40 repeat protein [G 99.7 1.6E-16 3.6E-21 128.7 11.8 231 56-288 134-446 (559)
232 KOG1517 Guanine nucleotide bin 99.7 8.9E-16 1.9E-20 134.9 16.5 199 68-269 1169-1384(1387)
233 PF02239 Cytochrom_D1: Cytochr 99.7 1.1E-13 2.4E-18 115.1 28.4 235 54-290 26-327 (369)
234 KOG2111 Uncharacterized conser 99.7 1.2E-13 2.5E-18 106.8 22.6 155 64-222 94-257 (346)
235 PF02239 Cytochrom_D1: Cytochr 99.7 3.8E-13 8.2E-18 111.9 27.2 192 79-275 8-211 (369)
236 KOG4497 Uncharacterized conser 99.7 6.9E-15 1.5E-19 114.1 15.2 197 69-273 13-247 (447)
237 KOG4497 Uncharacterized conser 99.7 1.3E-13 2.7E-18 107.2 21.6 228 56-290 83-414 (447)
238 KOG4547 WD40 repeat-containing 99.6 8.3E-14 1.8E-18 115.7 21.3 189 74-267 2-221 (541)
239 KOG4547 WD40 repeat-containing 99.6 4.7E-14 1E-18 117.2 19.7 167 117-288 3-194 (541)
240 TIGR02800 propeller_TolB tol-p 99.6 2.1E-13 4.6E-18 116.8 24.8 195 87-290 170-376 (417)
241 KOG1240 Protein kinase contain 99.6 3.5E-14 7.6E-19 126.8 18.9 191 97-288 1038-1248(1431)
242 KOG0280 Uncharacterized conser 99.6 4E-13 8.6E-18 102.9 21.4 203 85-289 44-264 (339)
243 KOG2321 WD40 repeat protein [G 99.6 3.2E-14 7E-19 117.8 16.3 194 68-267 137-344 (703)
244 PRK00178 tolB translocation pr 99.6 8.5E-13 1.8E-17 113.4 25.5 194 88-290 180-385 (430)
245 KOG0974 WD-repeat protein WDR6 99.6 5E-14 1.1E-18 123.9 17.3 187 76-267 98-289 (967)
246 PF10282 Lactonase: Lactonase, 99.6 1.7E-11 3.8E-16 102.0 31.6 222 64-286 86-345 (345)
247 KOG1064 RAVE (regulator of V-A 99.6 9.6E-15 2.1E-19 134.5 11.3 197 60-275 2204-2407(2439)
248 PF10282 Lactonase: Lactonase, 99.6 3.6E-11 7.7E-16 100.1 31.4 225 65-290 37-303 (345)
249 PRK04792 tolB translocation pr 99.6 3.3E-12 7.1E-17 109.7 24.5 194 88-290 199-404 (448)
250 TIGR02658 TTQ_MADH_Hv methylam 99.5 9E-11 2E-15 95.9 29.2 199 72-275 53-339 (352)
251 KOG1334 WD40 repeat protein [G 99.5 6.3E-14 1.4E-18 114.0 10.5 210 57-269 225-469 (559)
252 KOG2315 Predicted translation 99.5 6.9E-12 1.5E-16 103.9 22.2 215 63-288 164-410 (566)
253 PRK01029 tolB translocation pr 99.5 1.2E-11 2.6E-16 105.5 23.7 197 88-290 166-382 (428)
254 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.9E-10 4E-15 94.1 29.3 200 87-290 27-310 (352)
255 KOG4190 Uncharacterized conser 99.5 4.5E-14 9.8E-19 116.9 8.4 211 52-269 723-951 (1034)
256 PRK04043 tolB translocation pr 99.5 1.2E-10 2.6E-15 98.9 28.0 210 66-286 189-419 (419)
257 KOG0280 Uncharacterized conser 99.5 1.2E-11 2.7E-16 94.8 19.5 218 64-286 69-309 (339)
258 PF08450 SGL: SMP-30/Gluconola 99.5 5.8E-10 1.3E-14 88.5 29.4 211 69-287 4-233 (246)
259 KOG1354 Serine/threonine prote 99.5 2.1E-12 4.6E-17 101.0 14.7 212 64-278 25-314 (433)
260 KOG2041 WD40 repeat protein [G 99.5 1E-11 2.3E-16 105.9 19.9 220 64-289 14-319 (1189)
261 KOG0974 WD-repeat protein WDR6 99.5 1.6E-12 3.5E-17 114.6 14.4 147 72-222 141-289 (967)
262 PLN02919 haloacid dehalogenase 99.4 3.6E-10 7.9E-15 105.9 28.1 202 67-270 626-892 (1057)
263 KOG1409 Uncharacterized conser 99.4 2.5E-11 5.3E-16 95.1 17.1 158 64-222 68-271 (404)
264 KOG1409 Uncharacterized conser 99.4 1.3E-11 2.8E-16 96.7 15.1 214 52-269 12-273 (404)
265 KOG2315 Predicted translation 99.4 1.7E-10 3.8E-15 95.8 22.1 213 65-290 35-366 (566)
266 KOG4532 WD40-like repeat conta 99.4 2.5E-10 5.4E-15 86.8 20.1 222 68-289 71-313 (344)
267 KOG1354 Serine/threonine prote 99.4 1.3E-11 2.8E-16 96.7 12.6 202 65-268 85-361 (433)
268 COG2706 3-carboxymuconate cycl 99.4 5.2E-09 1.1E-13 83.0 26.9 228 62-290 37-302 (346)
269 COG2706 3-carboxymuconate cycl 99.4 4.6E-09 1E-13 83.3 26.5 220 68-287 92-345 (346)
270 PRK04043 tolB translocation pr 99.4 1.1E-09 2.3E-14 93.1 24.5 172 109-290 189-379 (419)
271 PLN02919 haloacid dehalogenase 99.3 3.6E-09 7.7E-14 99.4 29.2 220 68-290 571-870 (1057)
272 COG4946 Uncharacterized protei 99.3 8.9E-10 1.9E-14 90.2 21.1 176 72-255 327-507 (668)
273 COG4946 Uncharacterized protei 99.3 1.9E-09 4.1E-14 88.3 22.5 123 61-185 356-483 (668)
274 KOG1275 PAB-dependent poly(A) 99.3 1.2E-10 2.7E-15 101.9 16.5 183 77-265 147-341 (1118)
275 PF04762 IKI3: IKI3 family; I 99.3 1.5E-09 3.2E-14 100.2 24.4 223 62-289 73-359 (928)
276 KOG3914 WD repeat protein WDR4 99.3 5.6E-11 1.2E-15 94.9 12.5 161 110-275 65-232 (390)
277 KOG0309 Conserved WD40 repeat- 99.3 2.6E-11 5.6E-16 103.8 11.1 211 54-267 104-340 (1081)
278 KOG2066 Vacuolar assembly/sort 99.3 2.2E-10 4.8E-15 99.1 16.7 185 64-266 39-233 (846)
279 KOG4714 Nucleoporin [Nuclear s 99.3 6.5E-11 1.4E-15 89.5 11.7 169 53-222 78-255 (319)
280 KOG3914 WD repeat protein WDR4 99.3 1.7E-10 3.7E-15 92.2 13.9 161 66-230 64-232 (390)
281 KOG0309 Conserved WD40 repeat- 99.3 2.6E-11 5.6E-16 103.8 9.5 232 53-286 55-307 (1081)
282 PF07433 DUF1513: Protein of u 99.3 4.8E-08 1E-12 77.6 26.9 209 66-276 6-257 (305)
283 KOG1064 RAVE (regulator of V-A 99.3 3.4E-11 7.4E-16 111.9 10.5 165 106-275 2207-2375(2439)
284 PF15492 Nbas_N: Neuroblastoma 99.3 7.6E-09 1.6E-13 79.8 21.4 196 67-277 46-270 (282)
285 KOG1832 HIV-1 Vpr-binding prot 99.2 7.8E-12 1.7E-16 109.0 4.8 207 51-276 1088-1301(1516)
286 KOG4714 Nucleoporin [Nuclear s 99.2 5.9E-11 1.3E-15 89.7 8.6 197 67-267 39-255 (319)
287 KOG4190 Uncharacterized conser 99.2 3.6E-11 7.7E-16 100.1 8.1 174 100-275 728-915 (1034)
288 KOG2695 WD40 repeat protein [G 99.2 5.8E-11 1.3E-15 93.2 8.6 161 123-287 228-401 (425)
289 KOG1912 WD40 repeat protein [G 99.2 2.6E-09 5.5E-14 92.4 18.7 212 53-267 44-305 (1062)
290 KOG4532 WD40-like repeat conta 99.2 2.2E-09 4.9E-14 81.7 16.0 200 84-290 49-262 (344)
291 COG5170 CDC55 Serine/threonine 99.2 5E-10 1.1E-14 87.0 12.6 211 64-277 26-321 (460)
292 COG5354 Uncharacterized protei 99.2 1.8E-08 4E-13 83.2 21.9 196 65-269 174-398 (561)
293 PF13360 PQQ_2: PQQ-like domai 99.2 1.9E-08 4.2E-13 79.4 21.8 187 78-273 37-237 (238)
294 KOG2041 WD40 repeat protein [G 99.2 1.2E-08 2.5E-13 87.8 20.4 210 51-267 58-338 (1189)
295 COG5354 Uncharacterized protei 99.1 1.3E-08 2.8E-13 84.1 19.0 219 63-290 31-286 (561)
296 PF04762 IKI3: IKI3 family; I 99.1 2E-08 4.2E-13 92.9 22.5 198 63-265 119-378 (928)
297 TIGR03300 assembly_YfgL outer 99.1 4.4E-08 9.6E-13 82.9 22.7 191 79-279 147-351 (377)
298 KOG2314 Translation initiation 99.1 1.3E-08 2.9E-13 84.9 18.6 215 67-290 213-457 (698)
299 TIGR03300 assembly_YfgL outer 99.1 3.4E-08 7.3E-13 83.6 21.9 191 78-275 66-268 (377)
300 PF08450 SGL: SMP-30/Gluconola 99.1 3.1E-07 6.7E-12 72.9 26.2 181 67-255 42-244 (246)
301 KOG1912 WD40 repeat protein [G 99.1 1.3E-08 2.8E-13 88.2 18.7 221 66-289 17-283 (1062)
302 KOG0882 Cyclophilin-related pe 99.1 6E-10 1.3E-14 90.5 10.1 211 62-275 7-240 (558)
303 KOG2314 Translation initiation 99.1 1.3E-08 2.9E-13 84.9 17.2 182 89-277 192-392 (698)
304 KOG0882 Cyclophilin-related pe 99.1 4E-09 8.7E-14 85.8 13.4 220 54-276 43-315 (558)
305 KOG2695 WD40 repeat protein [G 99.1 8.5E-10 1.8E-14 86.8 8.7 162 81-245 228-401 (425)
306 KOG1920 IkappaB kinase complex 99.1 8.3E-08 1.8E-12 87.1 21.7 201 65-268 69-324 (1265)
307 KOG2114 Vacuolar assembly/sort 99.0 6.9E-08 1.5E-12 84.7 20.1 206 66-279 27-257 (933)
308 KOG1832 HIV-1 Vpr-binding prot 99.0 2.3E-10 5E-15 100.1 3.9 181 100-290 1094-1278(1516)
309 PF08553 VID27: VID27 cytoplas 99.0 1.3E-07 2.9E-12 84.6 21.1 134 126-265 501-646 (794)
310 PF13360 PQQ_2: PQQ-like domai 99.0 1.9E-07 4.1E-12 73.7 20.0 185 86-274 2-199 (238)
311 PF07433 DUF1513: Protein of u 99.0 1E-06 2.2E-11 70.1 22.1 194 55-264 47-283 (305)
312 KOG3617 WD40 and TPR repeat-co 98.9 1.4E-07 3.1E-12 82.8 18.4 108 69-179 20-131 (1416)
313 COG0823 TolB Periplasmic compo 98.9 3.3E-07 7.1E-12 77.7 20.3 228 54-288 182-423 (425)
314 KOG1645 RING-finger-containing 98.9 1.3E-07 2.9E-12 76.1 16.5 227 55-286 184-438 (463)
315 KOG4649 PQQ (pyrrolo-quinoline 98.9 1.9E-06 4.1E-11 66.0 21.5 149 73-223 19-167 (354)
316 PF00400 WD40: WD domain, G-be 98.9 2.8E-09 6E-14 58.4 5.0 38 55-93 2-39 (39)
317 KOG1275 PAB-dependent poly(A) 98.9 3.1E-08 6.7E-13 87.3 13.7 149 66-220 179-341 (1118)
318 PF08553 VID27: VID27 cytoplas 98.9 4.7E-07 1E-11 81.2 21.2 139 78-220 494-646 (794)
319 KOG2066 Vacuolar assembly/sort 98.9 2.2E-07 4.8E-12 81.0 18.4 159 56-221 50-233 (846)
320 PF06977 SdiA-regulated: SdiA- 98.9 4.6E-06 1E-10 65.4 24.3 204 57-263 14-247 (248)
321 PF00400 WD40: WD domain, G-be 98.9 7.9E-09 1.7E-13 56.6 6.3 39 181-219 1-39 (39)
322 COG3391 Uncharacterized conser 98.9 5.9E-06 1.3E-10 69.8 26.5 218 67-288 76-308 (381)
323 PF11768 DUF3312: Protein of u 98.8 6.5E-07 1.4E-11 75.9 18.4 138 109-248 207-369 (545)
324 KOG1008 Uncharacterized conser 98.8 9E-10 1.9E-14 93.3 1.2 201 64-266 56-275 (783)
325 PF08596 Lgl_C: Lethal giant l 98.8 3.8E-06 8.3E-11 70.6 22.4 207 66-277 3-301 (395)
326 COG5170 CDC55 Serine/threonine 98.8 1.3E-07 2.7E-12 73.9 10.9 183 107-290 26-292 (460)
327 KOG2114 Vacuolar assembly/sort 98.8 5.8E-07 1.3E-11 79.1 16.1 173 114-288 30-224 (933)
328 PRK11138 outer membrane biogen 98.8 4.6E-06 1E-10 71.0 21.3 191 79-277 162-364 (394)
329 PRK02888 nitrous-oxide reducta 98.7 4.1E-06 8.8E-11 72.9 20.5 178 82-267 210-405 (635)
330 PF11768 DUF3312: Protein of u 98.7 2.2E-06 4.7E-11 72.8 18.4 114 66-181 207-331 (545)
331 PRK11138 outer membrane biogen 98.7 3.8E-06 8.3E-11 71.5 19.5 194 79-274 71-282 (394)
332 COG3391 Uncharacterized conser 98.7 6.6E-05 1.4E-09 63.5 25.8 223 66-290 32-264 (381)
333 PF15492 Nbas_N: Neuroblastoma 98.7 2.9E-05 6.3E-10 60.4 20.8 142 113-256 3-167 (282)
334 KOG3621 WD40 repeat-containing 98.7 9.3E-07 2E-11 76.3 13.8 144 65-210 34-188 (726)
335 COG0823 TolB Periplasmic compo 98.6 3.5E-06 7.5E-11 71.6 16.9 171 97-273 182-365 (425)
336 KOG2395 Protein involved in va 98.6 1.6E-06 3.4E-11 72.7 14.2 141 118-265 344-499 (644)
337 KOG1008 Uncharacterized conser 98.6 2.2E-08 4.7E-13 85.1 3.3 162 57-221 95-275 (783)
338 KOG3617 WD40 and TPR repeat-co 98.6 1.4E-06 3.1E-11 76.8 14.3 189 67-256 62-375 (1416)
339 COG3386 Gluconolactonase [Carb 98.6 6.2E-05 1.3E-09 61.2 22.7 212 69-287 29-263 (307)
340 PF06977 SdiA-regulated: SdiA- 98.6 3.9E-05 8.4E-10 60.2 20.8 187 102-290 16-233 (248)
341 PRK02888 nitrous-oxide reducta 98.6 3.4E-05 7.4E-10 67.3 21.5 187 78-269 67-354 (635)
342 PF04841 Vps16_N: Vps16, N-ter 98.6 8.5E-05 1.8E-09 63.3 23.8 191 88-289 62-270 (410)
343 KOG1920 IkappaB kinase complex 98.6 2.9E-05 6.2E-10 71.3 21.2 178 107-290 68-301 (1265)
344 cd00216 PQQ_DH Dehydrogenases 98.5 6.6E-05 1.4E-09 65.7 22.9 195 79-275 63-328 (488)
345 KOG1645 RING-finger-containing 98.5 1.1E-06 2.3E-11 71.1 9.6 94 131-225 175-270 (463)
346 PF04053 Coatomer_WDAD: Coatom 98.5 3.1E-05 6.6E-10 66.2 18.6 165 106-288 31-206 (443)
347 PF00930 DPPIV_N: Dipeptidyl p 98.5 4.8E-05 1E-09 63.8 19.5 201 86-289 22-291 (353)
348 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00036 7.7E-09 53.9 22.5 169 56-229 24-214 (354)
349 cd00216 PQQ_DH Dehydrogenases 98.4 9.7E-05 2.1E-09 64.7 20.8 185 85-276 173-434 (488)
350 PF04053 Coatomer_WDAD: Coatom 98.4 6.6E-05 1.4E-09 64.2 18.8 191 50-262 18-219 (443)
351 KOG2395 Protein involved in va 98.4 1.7E-05 3.7E-10 66.7 14.6 139 79-220 348-499 (644)
352 PF06433 Me-amine-dh_H: Methyl 98.4 0.00057 1.2E-08 55.5 22.7 198 70-276 100-330 (342)
353 PF03178 CPSF_A: CPSF A subuni 98.4 0.00035 7.6E-09 57.8 21.9 181 77-263 42-262 (321)
354 PF03178 CPSF_A: CPSF A subuni 98.4 9.1E-05 2E-09 61.3 18.3 174 87-266 2-202 (321)
355 KOG4640 Anaphase-promoting com 98.4 3.2E-06 7E-11 72.2 9.4 95 190-288 19-115 (665)
356 PF08596 Lgl_C: Lethal giant l 98.3 0.00014 3E-09 61.4 18.6 201 54-256 76-326 (395)
357 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00023 5E-09 59.7 20.0 227 58-290 36-339 (353)
358 KOG4640 Anaphase-promoting com 98.3 4.1E-06 8.8E-11 71.6 9.3 95 63-159 19-115 (665)
359 KOG3621 WD40 repeat-containing 98.3 1.5E-05 3.2E-10 69.1 12.6 117 151-267 35-155 (726)
360 PF02897 Peptidase_S9_N: Proly 98.3 0.0017 3.7E-08 55.8 27.0 215 66-286 125-378 (414)
361 PF00780 CNH: CNH domain; Int 98.3 0.0013 2.8E-08 53.2 24.6 142 76-224 6-168 (275)
362 PHA02713 hypothetical protein; 98.3 7.7E-05 1.7E-09 66.2 16.4 195 76-278 303-545 (557)
363 PF06433 Me-amine-dh_H: Methyl 98.2 0.0022 4.8E-08 52.2 22.1 217 69-290 40-300 (342)
364 PRK13616 lipoprotein LpqB; Pro 98.2 0.00048 1E-08 61.3 19.1 188 65-261 350-563 (591)
365 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00066 1.4E-08 45.6 15.1 100 152-261 2-109 (111)
366 COG5167 VID27 Protein involved 98.1 0.00025 5.3E-09 59.9 15.7 143 117-266 477-632 (776)
367 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0042 9E-08 53.2 23.9 183 55-248 71-271 (410)
368 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0043 9.3E-08 54.9 24.0 188 86-277 180-501 (527)
369 PRK13616 lipoprotein LpqB; Pro 98.1 0.00056 1.2E-08 60.9 18.5 147 108-265 350-524 (591)
370 COG3386 Gluconolactonase [Carb 98.1 0.0029 6.4E-08 51.6 21.0 165 87-256 85-275 (307)
371 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0046 1E-07 54.7 23.8 191 79-272 71-339 (527)
372 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.0011 2.3E-08 44.6 14.9 101 67-174 2-109 (111)
373 KOG2079 Vacuolar assembly/sort 98.0 0.00014 3.1E-09 66.2 13.6 96 78-173 100-199 (1206)
374 KOG4499 Ca2+-binding protein R 98.0 0.0023 4.9E-08 48.8 17.4 208 76-287 26-262 (310)
375 COG3490 Uncharacterized protei 98.0 0.0022 4.7E-08 50.4 17.8 209 66-274 69-318 (366)
376 TIGR03074 PQQ_membr_DH membran 98.0 0.011 2.5E-07 54.2 25.2 195 79-275 196-486 (764)
377 COG3204 Uncharacterized protei 98.0 0.0026 5.6E-08 50.3 18.0 171 104-275 82-271 (316)
378 PF14870 PSII_BNR: Photosynthe 98.0 0.0057 1.2E-07 49.6 22.1 157 103-263 140-301 (302)
379 smart00320 WD40 WD40 repeats. 98.0 2.5E-05 5.3E-10 41.5 4.9 38 55-93 3-40 (40)
380 KOG2444 WD40 repeat protein [G 97.9 1.8E-05 3.9E-10 59.6 5.0 140 122-267 33-178 (238)
381 smart00320 WD40 WD40 repeats. 97.9 5.4E-05 1.2E-09 40.1 5.9 38 182-219 3-40 (40)
382 KOG2079 Vacuolar assembly/sort 97.9 8.2E-05 1.8E-09 67.7 8.7 104 160-265 98-202 (1206)
383 PHA03098 kelch-like protein; P 97.8 0.0041 8.9E-08 55.4 18.9 186 76-269 294-514 (534)
384 PF14583 Pectate_lyase22: Olig 97.8 0.0078 1.7E-07 50.0 18.5 194 93-290 16-249 (386)
385 PF00780 CNH: CNH domain; Int 97.8 0.012 2.5E-07 47.6 19.5 145 117-272 5-171 (275)
386 PF05096 Glu_cyclase_2: Glutam 97.8 0.012 2.6E-07 46.3 22.3 185 99-289 35-241 (264)
387 PF05096 Glu_cyclase_2: Glutam 97.7 0.013 2.9E-07 46.1 22.8 182 67-254 47-249 (264)
388 PF14583 Pectate_lyase22: Olig 97.7 0.02 4.2E-07 47.7 20.3 218 52-271 18-277 (386)
389 COG3204 Uncharacterized protei 97.7 0.015 3.3E-07 46.1 19.6 191 61-253 82-300 (316)
390 PF05694 SBP56: 56kDa selenium 97.7 0.026 5.5E-07 47.6 20.0 214 54-267 52-343 (461)
391 PHA02790 Kelch-like protein; P 97.6 0.011 2.4E-07 51.8 18.5 184 76-269 271-473 (480)
392 KOG2444 WD40 repeat protein [G 97.6 0.00021 4.5E-09 54.1 6.3 137 83-222 36-178 (238)
393 KOG4441 Proteins containing BT 97.6 0.008 1.7E-07 53.6 17.3 187 76-269 332-549 (571)
394 KOG3630 Nuclear pore complex, 97.6 0.0015 3.3E-08 60.2 12.6 145 108-253 101-260 (1405)
395 PF10647 Gmad1: Lipoprotein Lp 97.6 0.025 5.5E-07 45.0 18.5 148 109-259 25-188 (253)
396 KOG4441 Proteins containing BT 97.5 0.0098 2.1E-07 53.1 17.0 186 76-269 284-502 (571)
397 PF15390 DUF4613: Domain of un 97.5 0.013 2.8E-07 50.8 16.2 149 107-265 19-185 (671)
398 PF14655 RAB3GAP2_N: Rab3 GTPa 97.5 0.048 1.1E-06 46.3 21.7 86 191-278 307-410 (415)
399 PF02897 Peptidase_S9_N: Proly 97.5 0.058 1.2E-06 46.4 22.7 154 110-269 126-312 (414)
400 TIGR03118 PEPCTERM_chp_1 conse 97.5 0.038 8.3E-07 44.2 24.2 220 66-288 24-307 (336)
401 PF15390 DUF4613: Domain of un 97.4 0.016 3.4E-07 50.3 15.9 148 65-221 20-186 (671)
402 COG5167 VID27 Protein involved 97.4 0.006 1.3E-07 51.9 13.1 141 76-221 478-632 (776)
403 KOG4499 Ca2+-binding protein R 97.4 0.042 9E-07 42.2 16.1 143 107-254 108-272 (310)
404 PF05694 SBP56: 56kDa selenium 97.3 0.073 1.6E-06 45.0 20.4 186 70-256 135-393 (461)
405 PF12894 Apc4_WD40: Anaphase-p 97.3 0.00087 1.9E-08 37.7 5.2 36 235-271 10-45 (47)
406 KOG3630 Nuclear pore complex, 97.3 0.0042 9.2E-08 57.5 11.9 132 151-287 102-252 (1405)
407 PRK13684 Ycf48-like protein; P 97.3 0.08 1.7E-06 44.1 20.9 153 107-264 172-329 (334)
408 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0016 3.5E-08 36.6 5.5 35 190-225 10-44 (47)
409 PHA02713 hypothetical protein; 97.2 0.0067 1.4E-07 54.2 12.3 145 76-224 351-536 (557)
410 TIGR02604 Piru_Ver_Nterm putat 97.2 0.077 1.7E-06 44.9 17.5 144 108-257 14-204 (367)
411 COG3490 Uncharacterized protei 97.1 0.098 2.1E-06 41.5 17.0 147 109-255 69-244 (366)
412 TIGR02604 Piru_Ver_Nterm putat 97.1 0.13 2.8E-06 43.5 18.1 138 150-290 14-195 (367)
413 KOG1897 Damage-specific DNA bi 97.1 0.2 4.4E-06 46.3 19.6 151 66-220 776-941 (1096)
414 PRK10115 protease 2; Provision 97.1 0.24 5.2E-06 45.6 28.2 194 65-265 127-343 (686)
415 PF14870 PSII_BNR: Photosynthe 97.0 0.13 2.7E-06 42.0 23.9 213 67-288 64-285 (302)
416 TIGR03074 PQQ_membr_DH membran 97.0 0.23 4.9E-06 46.0 20.1 157 119-276 194-432 (764)
417 PRK13684 Ycf48-like protein; P 97.0 0.15 3.1E-06 42.6 17.4 151 64-220 172-330 (334)
418 PF12234 Rav1p_C: RAVE protein 96.9 0.072 1.6E-06 47.6 15.2 114 150-265 30-155 (631)
419 KOG1916 Nuclear protein, conta 96.8 0.0012 2.5E-08 59.6 3.1 99 59-160 127-235 (1283)
420 PF12234 Rav1p_C: RAVE protein 96.7 0.15 3.2E-06 45.7 15.9 111 109-221 31-156 (631)
421 KOG1897 Damage-specific DNA bi 96.7 0.37 8.1E-06 44.7 18.5 172 89-266 752-942 (1096)
422 COG1520 FOG: WD40-like repeat 96.7 0.29 6.3E-06 41.5 19.9 196 79-277 70-279 (370)
423 PF10647 Gmad1: Lipoprotein Lp 96.7 0.21 4.6E-06 39.8 20.1 147 66-213 25-187 (253)
424 PHA03098 kelch-like protein; P 96.7 0.038 8.2E-07 49.3 12.6 143 76-223 342-513 (534)
425 COG4257 Vgb Streptogramin lyas 96.7 0.21 4.6E-06 39.5 17.8 196 66-267 63-263 (353)
426 COG3823 Glutamine cyclotransfe 96.7 0.17 3.7E-06 38.3 14.3 175 76-254 55-247 (262)
427 PF08728 CRT10: CRT10; InterP 96.7 0.18 3.9E-06 45.7 16.0 113 152-265 103-245 (717)
428 COG5276 Uncharacterized conser 96.5 0.31 6.8E-06 38.9 20.0 153 108-269 87-244 (370)
429 COG3823 Glutamine cyclotransfe 96.4 0.27 5.9E-06 37.2 13.2 168 118-289 55-239 (262)
430 PLN02193 nitrile-specifier pro 96.4 0.62 1.3E-05 40.9 19.9 186 77-269 176-413 (470)
431 PF10168 Nup88: Nuclear pore c 96.4 0.28 6.1E-06 45.1 15.6 71 108-179 85-179 (717)
432 KOG2280 Vacuolar assembly/sort 96.4 0.41 9E-06 43.1 15.9 182 86-275 63-255 (829)
433 PLN00033 photosystem II stabil 96.3 0.57 1.2E-05 40.0 18.5 149 110-263 241-396 (398)
434 PHA02790 Kelch-like protein; P 96.3 0.16 3.5E-06 44.6 13.8 139 76-223 318-472 (480)
435 PLN02153 epithiospecifier prot 96.2 0.63 1.4E-05 38.9 19.8 187 76-269 32-287 (341)
436 KOG2247 WD40 repeat-containing 96.2 0.00061 1.3E-08 57.3 -1.9 138 110-252 37-175 (615)
437 PRK10115 protease 2; Provision 96.1 1.1 2.4E-05 41.4 21.7 111 108-220 127-254 (686)
438 KOG2247 WD40 repeat-containing 96.1 0.00073 1.6E-08 56.8 -1.6 137 67-206 37-174 (615)
439 PF13449 Phytase-like: Esteras 96.1 0.65 1.4E-05 38.6 17.5 146 107-253 19-231 (326)
440 PF05935 Arylsulfotrans: Aryls 96.1 0.79 1.7E-05 40.3 16.8 142 86-232 127-312 (477)
441 PF05935 Arylsulfotrans: Aryls 96.0 0.83 1.8E-05 40.2 16.5 147 127-278 126-313 (477)
442 COG1520 FOG: WD40-like repeat 96.0 0.8 1.7E-05 38.8 16.0 151 121-274 70-225 (370)
443 PF14781 BBS2_N: Ciliary BBSom 95.9 0.34 7.4E-06 33.9 12.8 113 155-274 4-133 (136)
444 PF10313 DUF2415: Uncharacteri 95.9 0.051 1.1E-06 29.7 5.5 32 65-96 1-34 (43)
445 PF10168 Nup88: Nuclear pore c 95.9 1.4 3.1E-05 40.7 19.3 74 64-139 84-181 (717)
446 KOG2377 Uncharacterized conser 95.8 0.38 8.2E-06 40.9 12.6 138 68-209 26-171 (657)
447 COG5276 Uncharacterized conser 95.8 0.76 1.6E-05 36.9 21.2 157 64-230 86-250 (370)
448 PF10313 DUF2415: Uncharacteri 95.8 0.064 1.4E-06 29.3 5.5 32 150-181 1-35 (43)
449 PLN00033 photosystem II stabil 95.8 1 2.3E-05 38.4 18.5 145 67-218 241-396 (398)
450 PF14781 BBS2_N: Ciliary BBSom 95.7 0.44 9.6E-06 33.4 14.1 116 112-230 3-134 (136)
451 PF14655 RAB3GAP2_N: Rab3 GTPa 95.7 0.65 1.4E-05 39.7 13.9 97 49-148 292-409 (415)
452 PF14727 PHTB1_N: PTHB1 N-term 95.4 1.5 3.2E-05 37.7 17.2 151 67-219 27-202 (418)
453 PF08728 CRT10: CRT10; InterP 95.4 1.1 2.4E-05 40.8 15.0 142 77-220 49-245 (717)
454 PF14761 HPS3_N: Hermansky-Pud 95.4 0.87 1.9E-05 34.8 15.1 141 120-265 29-213 (215)
455 PF07250 Glyoxal_oxid_N: Glyox 95.4 1 2.3E-05 35.5 13.4 144 131-276 48-207 (243)
456 PF07995 GSDH: Glucose / Sorbo 95.4 1.4 3E-05 36.8 23.7 218 66-290 3-317 (331)
457 KOG2377 Uncharacterized conser 95.3 0.66 1.4E-05 39.5 12.1 124 127-255 41-172 (657)
458 TIGR03548 mutarot_permut cycli 95.1 1.6 3.5E-05 36.1 17.0 106 76-183 72-198 (323)
459 PF14761 HPS3_N: Hermansky-Pud 95.1 1.1 2.5E-05 34.2 12.4 104 162-268 29-165 (215)
460 TIGR02276 beta_rpt_yvtn 40-res 95.1 0.16 3.5E-06 27.4 5.9 41 246-287 1-42 (42)
461 PF07569 Hira: TUP1-like enhan 95.0 0.29 6.2E-06 38.1 9.1 65 157-222 18-96 (219)
462 PF07569 Hira: TUP1-like enhan 94.9 0.27 5.9E-06 38.2 8.8 73 192-267 13-96 (219)
463 PF11635 Med16: Mediator compl 94.8 3.6 7.9E-05 38.5 18.7 71 191-261 259-345 (753)
464 KOG2280 Vacuolar assembly/sort 94.8 1.4 2.9E-05 40.0 13.3 163 63-230 82-255 (829)
465 KOG1900 Nuclear pore complex, 94.7 0.61 1.3E-05 44.7 11.6 159 106-267 77-273 (1311)
466 KOG1983 Tomosyn and related SN 94.6 1.2 2.6E-05 42.8 13.7 34 65-99 36-69 (993)
467 TIGR03548 mutarot_permut cycli 94.6 2.2 4.9E-05 35.3 18.4 105 118-224 72-197 (323)
468 PF12768 Rax2: Cortical protei 94.5 1.6 3.5E-05 35.3 12.4 116 171-287 16-145 (281)
469 COG4590 ABC-type uncharacteriz 94.5 0.27 5.9E-06 41.7 8.1 161 104-270 217-390 (733)
470 KOG1916 Nuclear protein, conta 94.5 0.079 1.7E-06 48.5 5.3 120 64-184 180-328 (1283)
471 PF14779 BBS1: Ciliary BBSome 94.5 1.9 4.2E-05 34.1 18.0 69 191-263 176-255 (257)
472 PLN02153 epithiospecifier prot 94.4 2.6 5.6E-05 35.3 19.1 143 76-223 85-286 (341)
473 PF11715 Nup160: Nucleoporin N 94.4 0.45 9.7E-06 42.7 10.1 76 201-276 156-258 (547)
474 KOG4460 Nuclear pore complex, 94.4 1.7 3.6E-05 37.9 12.6 81 151-231 105-208 (741)
475 PF07995 GSDH: Glucose / Sorbo 94.4 1.6 3.6E-05 36.3 12.7 106 151-257 3-134 (331)
476 PF13449 Phytase-like: Esteras 94.3 2.7 5.8E-05 35.0 16.9 107 149-256 19-166 (326)
477 PF12657 TFIIIC_delta: Transcr 94.2 0.47 1E-05 35.4 8.3 31 192-222 86-122 (173)
478 PF07250 Glyoxal_oxid_N: Glyox 94.0 1.3 2.9E-05 34.9 10.6 141 89-232 48-208 (243)
479 PF10214 Rrn6: RNA polymerase 93.8 5.9 0.00013 37.3 19.2 140 147-288 77-256 (765)
480 KOG1900 Nuclear pore complex, 93.7 1.3 2.9E-05 42.6 11.7 152 68-222 82-273 (1311)
481 PLN02193 nitrile-specifier pro 93.6 4.8 0.0001 35.4 18.7 144 76-224 228-413 (470)
482 PF12768 Rax2: Cortical protei 93.3 3.8 8.2E-05 33.2 15.9 115 86-201 15-146 (281)
483 COG5290 IkappaB kinase complex 93.2 2.1 4.4E-05 39.3 11.4 93 195-289 250-347 (1243)
484 KOG4460 Nuclear pore complex, 92.9 3.1 6.8E-05 36.3 11.7 80 193-272 105-204 (741)
485 PF12657 TFIIIC_delta: Transcr 92.9 1.3 2.8E-05 33.0 8.8 30 151-180 87-122 (173)
486 TIGR03547 muta_rot_YjhT mutatr 92.8 5.1 0.00011 33.6 16.8 53 76-128 63-128 (346)
487 TIGR03606 non_repeat_PQQ dehyd 92.8 6.1 0.00013 34.4 16.4 113 145-257 25-166 (454)
488 PF11715 Nup160: Nucleoporin N 92.6 0.82 1.8E-05 41.1 8.6 72 159-230 156-257 (547)
489 PF03022 MRJP: Major royal jel 92.5 5 0.00011 32.7 21.4 157 129-288 34-243 (287)
490 KOG1898 Splicing factor 3b, su 92.3 11 0.00024 36.0 19.9 131 128-266 911-1048(1205)
491 PF08801 Nucleoporin_N: Nup133 92.2 7.1 0.00015 33.8 17.9 32 236-267 189-220 (422)
492 PRK14131 N-acetylneuraminic ac 92.2 6.6 0.00014 33.4 17.0 53 76-128 84-149 (376)
493 PF03022 MRJP: Major royal jel 92.0 5.7 0.00012 32.4 22.6 189 66-255 2-254 (287)
494 COG4590 ABC-type uncharacteriz 91.9 0.94 2E-05 38.6 7.4 167 55-225 211-390 (733)
495 PF10214 Rrn6: RNA polymerase 91.8 12 0.00025 35.4 22.5 158 105-267 77-277 (765)
496 TIGR02276 beta_rpt_yvtn 40-res 91.7 1.2 2.6E-05 23.9 5.7 32 74-105 1-32 (42)
497 PF02333 Phytase: Phytase; In 91.3 8.3 0.00018 32.7 22.8 195 76-274 67-299 (381)
498 TIGR03547 muta_rot_YjhT mutatr 91.1 8.2 0.00018 32.3 18.2 53 118-170 63-128 (346)
499 PF14779 BBS1: Ciliary BBSome 91.0 6.8 0.00015 31.1 18.5 69 150-218 177-255 (257)
500 COG5308 NUP170 Nuclear pore co 90.9 7.5 0.00016 36.4 12.3 138 84-223 99-277 (1263)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.8e-47 Score=299.26 Aligned_cols=235 Identities=23% Similarity=0.408 Sum_probs=225.8
Q ss_pred CCCceeeeccCCcCEEEEEECCC-CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (290)
..+.+++|+||+..|.++.|+|. +...+|||+.||++++|++.+..++..+.+|...|..++|+|+|++|++++.|.+-
T Consensus 206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tW 285 (459)
T KOG0272|consen 206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTW 285 (459)
T ss_pred CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccch
Confidence 45788999999999999999996 47789999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC
Q 022910 132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (290)
Q Consensus 132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 211 (290)
++||+.++..+....+|...|.+++|+|+|.++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+.
T Consensus 286 RlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~ 365 (459)
T KOG0272|consen 286 RLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS 365 (459)
T ss_pred hhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
|++++|||++....+.++.. |..-|+.++|+| .|.+|+|++.|+++++|...++.+++++.+|.+.|.++..+||+
T Consensus 366 Dnt~kVWDLR~r~~ly~ipA---H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 366 DNTCKVWDLRMRSELYTIPA---HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS 442 (459)
T ss_pred CCcEEEeeecccccceeccc---ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCC
Confidence 99999999999888887777 889999999999 88999999999999999999999999999999999999999986
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-46 Score=289.78 Aligned_cols=234 Identities=29% Similarity=0.544 Sum_probs=212.4
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 132 (290)
...+...+.||.++|.|++|+| .+..|++|+.|.++|+||+.+..+..+.++|...|.|++|+|||+.||+|+.+|+|+
T Consensus 104 vtrCssS~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 104 VTRCSSSIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred cceeccccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 3556777889999999999999 888999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceE-EEEecCCCCEEEEEEcC-----CCCEEEEeeCCCeEEEEECCcccEEEee-------------------
Q 022910 133 IWDPSSGNLK-CTLEGPGGGVEWVSWHP-----RGHIVLAGSEDSTVWMWNADRAAYLNMF------------------- 187 (290)
Q Consensus 133 i~d~~~~~~~-~~~~~~~~~i~~i~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------------- 187 (290)
+||..+++++ ..+.+|...|++++|.| ..++||+++.||.|+|||+..++++..+
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliy 262 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIY 262 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEE
Confidence 9999998765 67889999999999987 4568899999999999988765432222
Q ss_pred --------------------------------------------------------------------------------
Q 022910 188 -------------------------------------------------------------------------------- 187 (290)
Q Consensus 188 -------------------------------------------------------------------------------- 187 (290)
T Consensus 263 SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg 342 (480)
T KOG0271|consen 263 SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG 342 (480)
T ss_pred ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence
Q ss_pred ---------------------ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC
Q 022910 188 ---------------------SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246 (290)
Q Consensus 188 ---------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 246 (290)
.+|..-|..+.|+|+++++++++-|..|++|+.++|+.+..+++ |-..|+.++|+.
T Consensus 343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG---Hv~~VYqvawsa 419 (480)
T KOG0271|consen 343 SDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG---HVAAVYQVAWSA 419 (480)
T ss_pred cCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh---ccceeEEEEecc
Confidence 34456688899999999999999999999999999999988888 889999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 247 DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 247 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
|.++|++|+.|.++++|++++.++...+.+|...|.++.|+|||
T Consensus 420 DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG 463 (480)
T KOG0271|consen 420 DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDG 463 (480)
T ss_pred CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCC
Confidence 99999999999999999999999999999999999999999997
No 3
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9e-43 Score=269.41 Aligned_cols=275 Identities=40% Similarity=0.721 Sum_probs=236.6
Q ss_pred cccccCCCceeeeeecCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEE
Q 022910 14 REVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWR 93 (290)
Q Consensus 14 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 93 (290)
+|.-++++|.++|+..+++++++.+++..+++++.-...-...+..|..|+.+|.+++.+| +.++++||+.|..-++|+
T Consensus 14 ee~i~d~dd~~~e~~~~~e~E~e~~d~~~ddd~E~~~~~mDdS~~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~ 92 (399)
T KOG0296|consen 14 EEEILDEDDVAQEMVVDEEDENEQDDEMMDDDEEALEVDMDDSLVTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWD 92 (399)
T ss_pred cccCCCchhhhhhcccccccccchhccccCCchHHhhcccccceeehhhcCCceEEEEeCC-CCceEEecCCCceEEEEE
Confidence 3334666666666665555555443333222222111111788999999999999999999 889999999999999999
Q ss_pred ccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeE
Q 022910 94 INQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTV 173 (290)
Q Consensus 94 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i 173 (290)
+.++.....+.+|+..|+++.|+.+|.+||+|..+|.|+||...++.....+......|.-+.|||.+..|+.|+.||.+
T Consensus 93 ~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsv 172 (399)
T KOG0296|consen 93 ISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSV 172 (399)
T ss_pred ccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcE
Confidence 99999999999999999999999999999999999999999999999888887666779999999999999999999999
Q ss_pred EEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC--------------------
Q 022910 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP-------------------- 233 (290)
Q Consensus 174 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------------- 233 (290)
.+|.+.++...+.+.+|+.++++=.|.|+|+.++++..||+|++|++++++++..+....
T Consensus 173 Wmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~ 252 (399)
T KOG0296|consen 173 WMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN 252 (399)
T ss_pred EEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence 999999988899999999999999999999999999999999999999988776654110
Q ss_pred ------------------------------------------------------------------------CcccCeEE
Q 022910 234 ------------------------------------------------------------------------YHTEGLTC 241 (290)
Q Consensus 234 ------------------------------------------------------------------------~~~~~v~~ 241 (290)
.|..+|+.
T Consensus 253 ~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~ 332 (399)
T KOG0296|consen 253 SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTK 332 (399)
T ss_pred CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEE
Confidence 06778999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 242 LTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 242 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
+.|.+ ..+|++++.+|.|+.||.++|+++.++.+|..+|.+++++|++
T Consensus 333 l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~ 380 (399)
T KOG0296|consen 333 LKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQK 380 (399)
T ss_pred EEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCC
Confidence 99998 7899999999999999999999999999999999999999974
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.8e-44 Score=281.68 Aligned_cols=225 Identities=25% Similarity=0.412 Sum_probs=217.0
Q ss_pred ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCC--CCEEEEEeCCCcEEEEcCCC
Q 022910 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD--GQLLASGGLDGLVQIWDPSS 138 (290)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~ 138 (290)
-|-+.+|..+.|++ ++..|+||+.+|.+++|...+...+..+.+|...|.++.|+|. +..+|+|+.||++++|++.+
T Consensus 172 ~gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 172 VGDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred ccCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 35678999999999 8889999999999999999999999999999999999999997 55899999999999999999
Q ss_pred CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 022910 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218 (290)
Q Consensus 139 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 218 (290)
..++..+.+|...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++|.|+|.++++|+.|..-+||
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred cCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 219 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d 289 (290)
|++++.++..+.+ |..+|..+.|+|+|..||||+.|++++|||++..+.+.++.+|.+-|+.+.|+|.
T Consensus 331 DlRtgr~im~L~g---H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 331 DLRTGRCIMFLAG---HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQ 398 (459)
T ss_pred ecccCcEEEEecc---cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEeccc
Confidence 9999999999998 8999999999999999999999999999999999999999999999999999984
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.3e-43 Score=293.92 Aligned_cols=232 Identities=25% Similarity=0.499 Sum_probs=215.7
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 132 (290)
.....+.+.||+++|+.++|+| +.++|++++.|+++|+|.+.+...+..+++|..||+++.|+|.|-|||+++.|++.+
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred CCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceee
Confidence 3455667999999999999999 888999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 022910 133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (290)
Q Consensus 133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 212 (290)
+|......+++.+.+|.+.+.|+.|||+.+|+++|+.|.++++||+.++..++.|.+|.++|.+++|+|+|++|++|+.|
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed 598 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED 598 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-----------------------
Q 022910 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK----------------------- 269 (290)
Q Consensus 213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~----------------------- 269 (290)
|.|.+||+.++..+..+.+ |.+.|.++.|+.+|..||+|+.|.+|++||+....
T Consensus 599 ~~I~iWDl~~~~~v~~l~~---Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLKG---HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASS 675 (707)
T ss_pred CcEEEEEcCCCcchhhhhc---ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCc
Confidence 9999999999999988888 78999999999999999999999999999985321
Q ss_pred -EEEEEccCCCcEEEEEEec
Q 022910 270 -VVSSLVSHTDSIECIGFSR 288 (290)
Q Consensus 270 -~~~~~~~~~~~v~~i~~s~ 288 (290)
++.++..-..+|.++.|..
T Consensus 676 ~llgs~~tK~tpv~~l~Ftr 695 (707)
T KOG0263|consen 676 LLLGSFYTKNTPVVGLHFTR 695 (707)
T ss_pred ceeeeeeecCceEEEEEEec
Confidence 4555555566788887753
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-41 Score=256.08 Aligned_cols=236 Identities=24% Similarity=0.447 Sum_probs=215.2
Q ss_pred CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee--------------------------------
Q 022910 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-------------------------------- 99 (290)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------------------- 99 (290)
..-...++|+||.+.|+++.|++ +.++|++++.||.+.|||.-+...
T Consensus 43 i~~~~rr~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 43 IQMRTRRTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred eeeeeEEEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 34556699999999999999999 888999999999999999754322
Q ss_pred ----------------eeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcC-CCC
Q 022910 100 ----------------ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGH 162 (290)
Q Consensus 100 ----------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~ 162 (290)
.+.+.+|.+-+.|+.|.+ ..+|+++|.|.+..+||+++++.+..|.+|.+.|.++.++| +++
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 223457888888888876 55788888899999999999999999999999999999999 999
Q ss_pred EEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEE
Q 022910 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL 242 (290)
Q Consensus 163 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~ 242 (290)
.+++|+-|+..++||+|.+.+++.|.+|.+.|.+++|.|+|.-|++|+.|++.++||+|..+.+..+.... ...+|+++
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~-~~~gitSv 279 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS-IICGITSV 279 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc-ccCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999888887433 67889999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 243 TISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 243 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
+|+..|++|++|..|.++.+||.-.++.+..+.+|.+.|+++..+|||
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG 327 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDG 327 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCC
Confidence 999999999999999999999999999999999999999999999997
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-41 Score=252.52 Aligned_cols=232 Identities=25% Similarity=0.438 Sum_probs=212.5
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-----CeeeeeeccccCCEEEEEECCCCCEEEEEeCC
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-----GDWASEIQGHKDSVSSLAFSMDGQLLASGGLD 128 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 128 (290)
....-++++|++.|+.++..+.+..++++++.|.++.+|++.. |..++.+.+|...|..+..+++|++.++++.|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 3456689999999999999997788999999999999999864 67788999999999999999999999999999
Q ss_pred CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecC-CCCeEEEEEcCC--CCE
Q 022910 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH-GSSVTCGDFTPD--GKT 205 (290)
Q Consensus 129 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~--~~~ 205 (290)
+.+++||+.+++..+.|.+|...|.+++|+++.+.+++|+.|.+|++|++............ ...|.|++|+|+ ..+
T Consensus 85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 99999999999999999999999999999999999999999999999999766544443332 789999999997 689
Q ss_pred EEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEE
Q 022910 206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIG 285 (290)
Q Consensus 206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~ 285 (290)
|++++.|++|++||+++.+....+.+ |...++.++++|||.++++|+.||.+.+||++.++.+.++. |...|.+++
T Consensus 165 Ivs~s~DktvKvWnl~~~~l~~~~~g---h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~ 240 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNCQLRTTFIG---HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLC 240 (315)
T ss_pred EEEccCCceEEEEccCCcchhhcccc---ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEE
Confidence 99999999999999999988887777 88999999999999999999999999999999999998886 478999999
Q ss_pred EecC
Q 022910 286 FSRS 289 (290)
Q Consensus 286 ~s~d 289 (290)
|+|+
T Consensus 241 fspn 244 (315)
T KOG0279|consen 241 FSPN 244 (315)
T ss_pred ecCC
Confidence 9997
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-41 Score=251.04 Aligned_cols=235 Identities=22% Similarity=0.347 Sum_probs=207.8
Q ss_pred CCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC
Q 022910 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (290)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 129 (290)
.-.-+.+++.|+||+-.|..+..++ +++++++++.|+++++||+.+++....|.+|...|.+++|+++++.|++|+.|.
T Consensus 49 d~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 49 DIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK 127 (315)
T ss_pred ccccCceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcc
Confidence 3445788999999999999999999 888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCceEEEEecC-CCCEEEEEEcCC--CCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEE
Q 022910 130 LVQIWDPSSGNLKCTLEGP-GGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206 (290)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~~-~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 206 (290)
+|++|++............ ...|.|+.|+|+ ..+|++++.|++|++||+++.+....+.+|.+.++.++++|+|.+.
T Consensus 128 Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslc 207 (315)
T KOG0279|consen 128 TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLC 207 (315)
T ss_pred eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEE
Confidence 9999998765544433332 678999999998 6799999999999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC---------
Q 022910 207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH--------- 277 (290)
Q Consensus 207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--------- 277 (290)
++|+.||.+.+||++.++.+..+. +...|.+++|+|+.-.|+.+ .+..|+|||+.++.++..+..-
T Consensus 208 asGgkdg~~~LwdL~~~k~lysl~----a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~ 282 (315)
T KOG0279|consen 208 ASGGKDGEAMLWDLNEGKNLYSLE----AFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAG 282 (315)
T ss_pred ecCCCCceEEEEEccCCceeEecc----CCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccC
Confidence 999999999999999999988877 78899999999987666555 4556999999999888776521
Q ss_pred CCcEEEEEEecCC
Q 022910 278 TDSIECIGFSRSE 290 (290)
Q Consensus 278 ~~~v~~i~~s~d~ 290 (290)
.....+++||+||
T Consensus 283 ~~~clslaws~dG 295 (315)
T KOG0279|consen 283 DPICLSLAWSADG 295 (315)
T ss_pred CcEEEEEEEcCCC
Confidence 2245688999887
No 9
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-41 Score=286.52 Aligned_cols=234 Identities=28% Similarity=0.477 Sum_probs=216.7
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-------------------------------eee
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-------------------------------WAS 101 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------------------------------~~~ 101 (290)
|.-+..++..-...++|..|++ +..+||.|-.|..|++|.+...+ ...
T Consensus 367 pSic~YT~~nt~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 367 PSICMYTFHNTYQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred CcEEEEEEEEcCCcceeEeecC-CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence 3334444555567899999999 77799999999999999987311 223
Q ss_pred eeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc
Q 022910 102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (290)
Q Consensus 102 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~ 181 (290)
++.+|.++|..+.|+|+.++|+++|.|+++|+|.+.+...+..+++|..||+++.|+|.|-+||+++.|++.++|.....
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 022910 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (290)
Q Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 261 (290)
.+++.+.+|.+.|.|+.|+|+..|+++|+.|.+||+||..+|..++.+.+ |.++|++++|+|+|++|++|+.||.|.
T Consensus 526 ~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G---H~~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 526 KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG---HKGPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC---CCCceEEEEEcCCCceEeecccCCcEE
Confidence 99999999999999999999999999999999999999999999999988 899999999999999999999999999
Q ss_pred EEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 262 MVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 262 ~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
+||+.+++++..+.+|.+.|.++.||.||
T Consensus 603 iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg 631 (707)
T KOG0263|consen 603 IWDLANGSLVKQLKGHTGTIYSLSFSRDG 631 (707)
T ss_pred EEEcCCCcchhhhhcccCceeEEEEecCC
Confidence 99999999999999999999999999986
No 10
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.7e-40 Score=252.33 Aligned_cols=236 Identities=26% Similarity=0.441 Sum_probs=224.0
Q ss_pred CCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC
Q 022910 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (290)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 129 (290)
...|.+..+.+.||.+-|.|+++.| +...|++|+.|++++|||+.++++..++.+|...|..+++++...|+++++.|+
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk 215 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDK 215 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCC
Confidence 4457788899999999999999999 889999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE
Q 022910 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (290)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 209 (290)
.|+.||++..+.++.+.+|-+.|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++|
T Consensus 216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred eeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred eCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d 289 (290)
+.|++|++||++.++...++.. |...+.+++.+|....+|+++.| .|+-|++..|..+..+.+|++.|.+++-..|
T Consensus 296 S~D~tvrlWDl~agkt~~tlt~---hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD 371 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTMITLTH---HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSD 371 (460)
T ss_pred cCCceEEEeeeccCceeEeeec---ccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccC
Confidence 9999999999999998877776 88899999999999999998877 6999999999999999999999999988777
Q ss_pred C
Q 022910 290 E 290 (290)
Q Consensus 290 ~ 290 (290)
|
T Consensus 372 ~ 372 (460)
T KOG0285|consen 372 G 372 (460)
T ss_pred c
Confidence 5
No 11
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.9e-40 Score=261.42 Aligned_cols=237 Identities=24% Similarity=0.433 Sum_probs=213.9
Q ss_pred CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-CeeeeeeccccCCEEEEEECCCCCEEEEEeCCCc
Q 022910 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (290)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 130 (290)
.|...++.+.||+..|+++.|.|..+.||++++.|+.|+||++-. ++++.++.+|..+|..++|+++|..|++++.|+.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 477788999999999999999998889999999999999999987 8899999999999999999999999999999999
Q ss_pred EEEEcCCCCceEEEEecCCCCEEEEEEcCCC-CEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE
Q 022910 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (290)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 209 (290)
|++||+++|+++..+.. ...++|+.|+|++ +.|++|+.|+.|+.||+|+++.++.+..|-+.|..+.|-+++++++++
T Consensus 282 lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 99999999999999884 4468999999998 899999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEcCCCCeeeEEE----------------------------------------------eCCCCcccCeEEEE
Q 022910 210 SDDATLRVWNPKSGENIHVI----------------------------------------------RGHPYHTEGLTCLT 243 (290)
Q Consensus 210 ~~dg~i~i~d~~~~~~~~~~----------------------------------------------~~~~~~~~~v~~~~ 243 (290)
+.|+.++||+.+.+-.+..+ .++. ..+....+.
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~-vaGys~~v~ 439 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS-VAGYSCQVD 439 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee-ccCceeeEE
Confidence 99999999998754322111 1111 233456789
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 244 ISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 244 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
|||||.+|++|..+|.+.+||.++-+++..+++|++++..+.|+|.+
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE 486 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence 99999999999999999999999999999999999999999999963
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.3e-37 Score=227.56 Aligned_cols=229 Identities=21% Similarity=0.380 Sum_probs=205.2
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (290)
+.|+..|.+|++.|+++.|.. +++.+++|+.||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|.|++
T Consensus 73 p~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irv 150 (311)
T KOG0315|consen 73 PNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRV 150 (311)
T ss_pred CCceeEEeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEE
Confidence 449999999999999999998 88999999999999999999977666666 7899999999999999999999999999
Q ss_pred EcCCCCceEEEEe-cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc------cEEEeeecCCCCeEEEEEcCCCCEE
Q 022910 134 WDPSSGNLKCTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA------AYLNMFSGHGSSVTCGDFTPDGKTI 206 (290)
Q Consensus 134 ~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l 206 (290)
||+....+...+. ...-+|+++...|+|.+++.+...|..++|++-.. .++.+++.|.+.+..+.+||++++|
T Consensus 151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 151 WDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred EEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence 9999886655543 34568999999999999999999999999998654 4667788999999999999999999
Q ss_pred EEEeCCCeEEEEcCCCC-eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEE
Q 022910 207 CTGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIG 285 (290)
Q Consensus 207 ~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~ 285 (290)
++++.|.+++||+..+. +....+.+ |...+..++||.+|.||++|+.|+.+++|++..++.++...+|.....|++
T Consensus 231 at~ssdktv~iwn~~~~~kle~~l~g---h~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 231 ATCSSDKTVKIWNTDDFFKLELVLTG---HQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVA 307 (311)
T ss_pred EeecCCceEEEEecCCceeeEEEeec---CCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEE
Confidence 99999999999999887 33444554 788999999999999999999999999999999999999999988888877
Q ss_pred Ee
Q 022910 286 FS 287 (290)
Q Consensus 286 ~s 287 (290)
..
T Consensus 308 ln 309 (311)
T KOG0315|consen 308 LN 309 (311)
T ss_pred ee
Confidence 64
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-38 Score=244.88 Aligned_cols=233 Identities=21% Similarity=0.406 Sum_probs=220.1
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-CeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (290)
..+....|+||.+.|..++|+. .++++++++.|-.+++||..+ .++++.+.+|...|.+++|-|.|.+|++++.|.+|
T Consensus 139 tg~~e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~ti 217 (406)
T KOG0295|consen 139 TGELERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTI 217 (406)
T ss_pred chhhhhhhhccccceeEEEEec-CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccce
Confidence 4566888999999999999999 889999999999999999987 56777888999999999999999999999999999
Q ss_pred EEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCC---------
Q 022910 132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD--------- 202 (290)
Q Consensus 132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~--------- 202 (290)
+.|++.++-++.++.+|...+..++.+.+|.++++++.|.+|++|-+.++++...+..|..+|.+++|.|.
T Consensus 218 k~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a 297 (406)
T KOG0295|consen 218 KAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA 297 (406)
T ss_pred eEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred ------CCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910 203 ------GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS 276 (290)
Q Consensus 203 ------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 276 (290)
+.++++++.|++|++||+.++.++.++.+ |...|..++|+|.|+||+++..|+++++||++++++...+.+
T Consensus 298 t~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g---hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 298 TGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG---HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA 374 (406)
T ss_pred cCCCCCccEEEeecccceEEEEeccCCeEEEEEec---ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC
Confidence 25899999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEecC
Q 022910 277 HTDSIECIGFSRS 289 (290)
Q Consensus 277 ~~~~v~~i~~s~d 289 (290)
|..-|+++.|+.+
T Consensus 375 h~hfvt~lDfh~~ 387 (406)
T KOG0295|consen 375 HEHFVTSLDFHKT 387 (406)
T ss_pred CcceeEEEecCCC
Confidence 9999999999754
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2e-39 Score=254.25 Aligned_cols=231 Identities=25% Similarity=0.434 Sum_probs=209.8
Q ss_pred ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 135 (290)
....+..|..+|+++.|++ ++..+++|+.+|.|++|+.+..........|...|++++|+|+...|++++.||+|+|||
T Consensus 130 FEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 130 FETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWD 208 (464)
T ss_pred HHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEe
Confidence 3455678999999999999 888999999999999999876544443344558999999999999999999999999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (290)
Q Consensus 136 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 215 (290)
....+....+.+|.-.|.+++|+|...++++|+.|..|++||.+++.++.++.+|+..|..+.|+|++++|++++.|..+
T Consensus 209 f~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~ 288 (464)
T KOG0284|consen 209 FRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSC 288 (464)
T ss_pred ccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceE
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCeeeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEEc-cCCCcEEEEEEecCC
Q 022910 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLV-SHTDSIECIGFSRSE 290 (290)
Q Consensus 216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~s~d~ 290 (290)
++||+++.+.+.++++ |...++++.|+| ...+|.+|+.||.|..|.+...+++..+. +|.+.|++++|+|=|
T Consensus 289 kv~DiR~mkEl~~~r~---Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlG 362 (464)
T KOG0284|consen 289 KVFDIRTMKELFTYRG---HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLG 362 (464)
T ss_pred EEEehhHhHHHHHhhc---chhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccc
Confidence 9999998888888887 889999999999 67799999999999999998777777665 799999999999954
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.9e-39 Score=254.30 Aligned_cols=221 Identities=23% Similarity=0.454 Sum_probs=203.6
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 143 (290)
+-+|..+.|.| .++.|++|+..|.+.+|+...-.....++.|..+|+++.|++++.++++|+.+|.|++|+..-.....
T Consensus 96 kc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred ccceeeEEEcC-CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 44789999999 77888899999999999986666566678999999999999999999999999999999987655443
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC
Q 022910 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223 (290)
Q Consensus 144 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 223 (290)
....|...|++++|+|+...|++++.||+|+|||....+..+.+.+|.-.|.+++|+|...++++++.|..|++||.+++
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg 254 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG 254 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence 33344488999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910 224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR 288 (290)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~ 288 (290)
.++.++.. |+..|..+.|+|++++|++++.|..++++|+++.+.+.++++|...|+++.|+|
T Consensus 255 ~cl~tlh~---HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP 316 (464)
T KOG0284|consen 255 SCLATLHG---HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHP 316 (464)
T ss_pred chhhhhhh---ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccc
Confidence 99988887 889999999999999999999999999999999999999999999999999998
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.9e-37 Score=243.31 Aligned_cols=233 Identities=22% Similarity=0.422 Sum_probs=216.3
Q ss_pred CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (290)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (290)
.++..+.+|..|+++|.++.|+. .+.+|++++.|+++.+||..++.....+..|..+-..+.|-. ...|++++.|+.|
T Consensus 264 ~~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i 341 (524)
T KOG0273|consen 264 KDGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCI 341 (524)
T ss_pred cCchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCCCceE
Confidence 46777888888999999999999 788999999999999999999999999998988878899964 4568999999999
Q ss_pred EEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCC--------
Q 022910 132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG-------- 203 (290)
Q Consensus 132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-------- 203 (290)
+|+.+....++.++.+|.++|.++.|+|.+.+|++++.|++++||..........+.+|...|+.+.|+|.|
T Consensus 342 ~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~ 421 (524)
T KOG0273|consen 342 HVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNM 421 (524)
T ss_pred EEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred -CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEE
Q 022910 204 -KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIE 282 (290)
Q Consensus 204 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~ 282 (290)
..+++++.|++|++||+..+.++..+.. |..+|.+++|+|+|++||+|+.||.|.+|+++++++++.+.+ ++.|.
T Consensus 422 ~~~l~sas~dstV~lwdv~~gv~i~~f~k---H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~If 497 (524)
T KOG0273|consen 422 NLMLASASFDSTVKLWDVESGVPIHTLMK---HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIF 497 (524)
T ss_pred CceEEEeecCCeEEEEEccCCceeEeecc---CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEE
Confidence 4689999999999999999999999876 899999999999999999999999999999999999999987 56799
Q ss_pred EEEEecCC
Q 022910 283 CIGFSRSE 290 (290)
Q Consensus 283 ~i~~s~d~ 290 (290)
.++|+.+|
T Consensus 498 el~Wn~~G 505 (524)
T KOG0273|consen 498 ELCWNAAG 505 (524)
T ss_pred EEEEcCCC
Confidence 99999765
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=259.93 Aligned_cols=233 Identities=32% Similarity=0.574 Sum_probs=211.8
Q ss_pred ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEc-cCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-NQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (290)
..+.+.+|...|.+++|+| ++.++++++.|++|+||++ ..+..++++.+|...|++++|+|+++++++|+.|++|+||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriW 273 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIW 273 (456)
T ss_pred hhccccccccceeeeEECC-CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEE
Confidence 5677799999999999999 7889999999999999999 5568899999999999999999999999999999999999
Q ss_pred cCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc--EEEeeecCCCC--eEEEEEcCCCCEEEEEe
Q 022910 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSS--VTCGDFTPDGKTICTGS 210 (290)
Q Consensus 135 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~l~~~~ 210 (290)
|+.++++...+.+|...|++++|++++++|++++.|+.|++||+.++. +...+..+... +++++|+|++.++++++
T Consensus 274 d~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 274 DVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred eccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 999999999999999999999999999999999999999999999998 55666665554 99999999999999999
Q ss_pred CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC-CCcEEEEEEecC
Q 022910 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH-TDSIECIGFSRS 289 (290)
Q Consensus 211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~i~~s~d 289 (290)
.|+.+++||++.+..+..+.++......+.+...++.+.++++|+.|+.|++|++.++..+..+.+| ...|..++|+|.
T Consensus 354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~ 433 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPT 433 (456)
T ss_pred CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCC
Confidence 9999999999999998888885422124555566779999999999999999999999999999999 889999999875
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-36 Score=241.86 Aligned_cols=221 Identities=25% Similarity=0.480 Sum_probs=205.4
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 143 (290)
+..|++++|+. ++.+||+|+.+|.++||+.. +..+.++..|.++|.++.|+..|.||++++.|+++.+||..++...+
T Consensus 235 nkdVT~L~Wn~-~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 235 NKDVTSLDWNN-DGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred cCCcceEEecC-CCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence 36899999998 88999999999999999965 67788899999999999999999999999999999999999999999
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC
Q 022910 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223 (290)
Q Consensus 144 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 223 (290)
.+..|..+...+.|-. ...|++++.||.|+++.+....++.++.+|.+.|.+|.|.|.+.+|++++.|++++||.+...
T Consensus 313 ~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 9998988877888874 557999999999999999999999999999999999999999999999999999999999888
Q ss_pred eeeEEEeCCCCcccCeEEEEEcCCC---------CEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 224 ENIHVIRGHPYHTEGLTCLTISADS---------TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
.....+.. |...|..+.|+|.| ..|++++.|++|++||+..+.++.+|..|..+|.+++|||+|
T Consensus 392 ~~~~~l~~---Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g 464 (524)
T KOG0273|consen 392 NSVHDLQA---HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG 464 (524)
T ss_pred cchhhhhh---hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC
Confidence 88888877 88899999999854 479999999999999999999999999999999999999986
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.4e-36 Score=229.69 Aligned_cols=236 Identities=24% Similarity=0.426 Sum_probs=202.4
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEcc-CCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN-QGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (290)
...++..+.||.+.|+.+.|+| ++.+||+|+.|..|.+|++. ..+....+++|.+.|..+.|.++++.|++++.|.+|
T Consensus 36 l~ap~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v 114 (338)
T KOG0265|consen 36 LQAPIMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTV 114 (338)
T ss_pred ccchhhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceE
Confidence 4567888999999999999999 88999999999999999954 455667788999999999999999999999999999
Q ss_pred EEEcCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe
Q 022910 132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS 210 (290)
Q Consensus 132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 210 (290)
+.||+++|+.+..++.|..-++.+.-+.-|. ++.+++.||++++||+|+...++++. .+.+++++.|...+..+.+|+
T Consensus 115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sgg 193 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGG 193 (338)
T ss_pred EEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecc
Confidence 9999999999999999999999888554454 66678889999999999998888775 457899999999999999999
Q ss_pred CCCeEEEEcCCCCeeeEEEeCCCC---------------------------------------------c--ccCeEEEE
Q 022910 211 DDATLRVWNPKSGENIHVIRGHPY---------------------------------------------H--TEGLTCLT 243 (290)
Q Consensus 211 ~dg~i~i~d~~~~~~~~~~~~~~~---------------------------------------------~--~~~v~~~~ 243 (290)
-|+.|++||++.+.....+.++.- | ....-.++
T Consensus 194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 194 IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS 273 (338)
T ss_pred ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence 999999999988877777665321 0 11123456
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 244 ISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 244 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
|+|++..+.+|+.|..+++||..+...+..+++|.+.|.++.|+|.+
T Consensus 274 wsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e 320 (338)
T KOG0265|consen 274 WSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTE 320 (338)
T ss_pred ccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCC
Confidence 77777777888888888888888888999999999999999999964
No 20
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-36 Score=223.06 Aligned_cols=238 Identities=24% Similarity=0.363 Sum_probs=212.4
Q ss_pred CCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC
Q 022910 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (290)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 129 (290)
.+.|.+....+.+|+++|.++.|+- ++++.++++.|.+|++|+...+.+++++.+|...|..++.+.++..|++|+.|.
T Consensus 3 ~e~ptkr~~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 3 LELPTKRLSILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred ccCcchhceeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCc
Confidence 3567778899999999999999999 888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc--EEEeee-------------------
Q 022910 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFS------------------- 188 (290)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~------------------- 188 (290)
.+.+||+.+|+.++.+.+|.+.|+.+.|+.+...+++|+.|..+++||.++.. +++.+.
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaG 161 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAG 161 (307)
T ss_pred eEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEee
Confidence 99999999999999999999999999999999999999999999999988642 222210
Q ss_pred -------------------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCC
Q 022910 189 -------------------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST 249 (290)
Q Consensus 189 -------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 249 (290)
....+|++++|+++++..++++.|++|++.|-.+|+.+..++++.... .-...+++....
T Consensus 162 S~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e-ykldc~l~qsdt 240 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME-YKLDCCLNQSDT 240 (307)
T ss_pred ccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccce-eeeeeeecccce
Confidence 135689999999999999999999999999999999999999865333 334456777778
Q ss_pred EEEEEeCCCcEEEEEcCCCcEEEEEccCCCc-EEEEEEecC
Q 022910 250 LALSGSKDGSVHMVNITTGKVVSSLVSHTDS-IECIGFSRS 289 (290)
Q Consensus 250 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-v~~i~~s~d 289 (290)
.+++|+.||.|++||+...+++..+..+... |.+++++|.
T Consensus 241 hV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPT 281 (307)
T ss_pred eEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccC
Confidence 9999999999999999999999999988887 899999984
No 21
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-37 Score=238.73 Aligned_cols=235 Identities=26% Similarity=0.443 Sum_probs=219.9
Q ss_pred CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (290)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (290)
.++...+.+.+|..+|+.+-|+| ...++++++.|++|++||+.++++...+++|...+..++|+..|+++++++.|=.+
T Consensus 96 pRp~l~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 96 PRPNLVQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred CCCCchhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence 34577888999999999999999 88899999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCC-CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe
Q 022910 132 QIWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS 210 (290)
Q Consensus 132 ~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 210 (290)
++||..+ .+++..+.+|...|.+++|-|.|.++++++.|.+|+.|++.++-+++++.+|...|..++.+.+|.++++++
T Consensus 175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s 254 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS 254 (406)
T ss_pred hheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC
Confidence 9999987 566777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC---------------CCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD---------------STLALSGSKDGSVHMVNITTGKVVSSLV 275 (290)
Q Consensus 211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 275 (290)
.|.+|++|-+.++++...++. |..+|-+++|.|. ++++++++.|++|++||+.++.++.++.
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~---hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ 331 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELRE---HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV 331 (406)
T ss_pred CCceEEEEEeccchhhhhhhc---cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe
Confidence 999999999999988777777 7888999999762 2599999999999999999999999999
Q ss_pred cCCCcEEEEEEecCC
Q 022910 276 SHTDSIECIGFSRSE 290 (290)
Q Consensus 276 ~~~~~v~~i~~s~d~ 290 (290)
+|.+.|++++|+|-|
T Consensus 332 ghdnwVr~~af~p~G 346 (406)
T KOG0295|consen 332 GHDNWVRGVAFSPGG 346 (406)
T ss_pred cccceeeeeEEcCCC
Confidence 999999999999976
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.3e-36 Score=254.84 Aligned_cols=223 Identities=29% Similarity=0.544 Sum_probs=204.2
Q ss_pred eeeeccC-CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe--eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910 57 THIFSGH-SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (290)
Q Consensus 57 ~~~~~~h-~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (290)
...+.+| ...|.++.|+| ++..+++++.++.+++|+....+ ....+.+|...|.+++|+|+++++++++.|++|+|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeecccccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 5555554 88999999999 67779999999999999997777 67777889999999999999999999999999999
Q ss_pred EcC-CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 022910 134 WDP-SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (290)
Q Consensus 134 ~d~-~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 212 (290)
||+ ..+..++++++|...|++++|+|+++++++|+.|++|++||+++++++..+.+|..+|++++|++++++|++++.|
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 999 5558889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcCCCCe--eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcE
Q 022910 213 ATLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSI 281 (290)
Q Consensus 213 g~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v 281 (290)
+.|++||+.++. +...+....... .+++++|+|++.+|++++.|+.+++|++..++.+..+.+|...+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~ 379 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLV 379 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcc
Confidence 999999999998 456666654344 79999999999999999999999999999999999999988754
No 23
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=4e-35 Score=250.11 Aligned_cols=231 Identities=17% Similarity=0.283 Sum_probs=194.1
Q ss_pred eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC-------eeeeeeccccCCEEEEEECCCC-CEEEEEeCCC
Q 022910 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMDG-QLLASGGLDG 129 (290)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg 129 (290)
..+.||.+.|++++|+|.++.+|++|+.|++|++|++.++ ..+..+.+|...|.+++|+|.+ ++|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 4578999999999999976789999999999999999764 3466788999999999999975 6999999999
Q ss_pred cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCC-eEEEEEcCCCCEEEE
Q 022910 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS-VTCGDFTPDGKTICT 208 (290)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~ 208 (290)
+|+|||+.+++.+..+..|...|.+++|+|++.+|++++.|+.|++||+++++.+..+.+|... +..+.|.+++..+++
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 9999999999999999999999999999999999999999999999999999999888888764 456788988777776
Q ss_pred Ee----CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCcEEEEEcc-CCCcEE
Q 022910 209 GS----DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKVVSSLVS-HTDSIE 282 (290)
Q Consensus 209 ~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~-~~~~v~ 282 (290)
++ .|+.|++||+++........... ....+....|++++++|++|+ .|+.|++|++.+++++..... +..++.
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~ 307 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHK 307 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCc
Confidence 54 47899999998765433222111 334566678899999999887 599999999999998877654 456788
Q ss_pred EEEEecC
Q 022910 283 CIGFSRS 289 (290)
Q Consensus 283 ~i~~s~d 289 (290)
+++|.|.
T Consensus 308 g~~~~pk 314 (493)
T PTZ00421 308 GLCMMPK 314 (493)
T ss_pred ceEeccc
Confidence 8888874
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.6e-36 Score=224.76 Aligned_cols=206 Identities=29% Similarity=0.506 Sum_probs=193.6
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC-CCCEEEEEeCCCcEE
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM-DGQLLASGGLDGLVQ 132 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~ 132 (290)
....+.+.+|++-+.|+.|.+ ++ .|+|++.|.+..+||+++++.+..+.+|.+.|.++.++| +++.+++|+.|+..+
T Consensus 135 ~~v~r~l~gHtgylScC~f~d-D~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 135 VRVSRELAGHTGYLSCCRFLD-DN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred ceeeeeecCccceeEEEEEcC-CC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence 456678999999999999997 54 566999999999999999999999999999999999999 899999999999999
Q ss_pred EEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec--CCCCeEEEEEcCCCCEEEEEe
Q 022910 133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGS 210 (290)
Q Consensus 133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~ 210 (290)
|||++.+...++|.+|...|+++.|.|+|.-|++|+.|++.++||+|..+.+..+.. ...+|++++|+..|++|++|.
T Consensus 213 lWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 213 LWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred eeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee
Confidence 999999999999999999999999999999999999999999999999888877764 346899999999999999999
Q ss_pred CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 022910 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (290)
Q Consensus 211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd 264 (290)
.|.++.+||.-.++.+..+.+ |...|+++..+|||.-|++|+.|.+++||.
T Consensus 293 ~d~~c~vWDtlk~e~vg~L~G---HeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 293 DDFTCNVWDTLKGERVGVLAG---HENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCceeEeeccccceEEEeec---cCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999988 899999999999999999999999999994
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.1e-35 Score=236.12 Aligned_cols=230 Identities=32% Similarity=0.607 Sum_probs=212.1
Q ss_pred eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcC
Q 022910 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (290)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 136 (290)
++.+++|.++|++++|+| ++.+|++++.+|.+++|++.+++....+..|...+..+.|+|++++|++++.+|.|++|++
T Consensus 2 ~~~~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred chHhcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 457789999999999999 6788999999999999999998888888889999999999999999999999999999999
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 022910 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 216 (290)
.+++.+..+..|...+.++.|++++.++++++.+|.|++|++++++....+..|...+.+++|+|++.++++++.++.|+
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 99888888888888999999999988899888899999999998888888888999999999999988888888899999
Q ss_pred EEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
+||+++++....+.. +...+.++.|+|+++.|++++.+|.|++||+++++.+..+..|...|.+++|+|++
T Consensus 161 i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 231 (289)
T cd00200 161 LWDLRTGKCVATLTG---HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG 231 (289)
T ss_pred EEEccccccceeEec---CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCC
Confidence 999998888777775 67789999999999999999999999999999999999998899999999999863
No 26
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.8e-36 Score=244.17 Aligned_cols=239 Identities=20% Similarity=0.301 Sum_probs=193.6
Q ss_pred CCCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe---------------------------eee
Q 022910 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---------------------------WAS 101 (290)
Q Consensus 49 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------------------------~~~ 101 (290)
....|......|.+|+..|.++++.| .+..|++|+.|-+|++||+.... .+.
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iL 230 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQIL 230 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEE
Confidence 44578999999999999999999999 78889999999999999985321 000
Q ss_pred e--------------------------------eccccCCEEEEEECCCCC-EEEEEeCCCcEEEEcCCCCc-eEEEEec
Q 022910 102 E--------------------------------IQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGN-LKCTLEG 147 (290)
Q Consensus 102 ~--------------------------------~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~ 147 (290)
. -++|...++|.+|+|..+ .|++++.||+++||++...+ .++.++.
T Consensus 231 vvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 231 VVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred EEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee
Confidence 0 057899999999999765 79999999999999997654 3333332
Q ss_pred -----CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc---EEEeeecCCC--CeEEEEEcCCCCEEEEEeCCCeEEE
Q 022910 148 -----PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGS--SVTCGDFTPDGKTICTGSDDATLRV 217 (290)
Q Consensus 148 -----~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i 217 (290)
..-+++.++|++++++||+|+.||.|.+|+..... ....-.+|.. .|+||.||++|++|++-+.|+++++
T Consensus 311 k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 22378999999999999999999999999986542 2233345655 8999999999999999999999999
Q ss_pred EcCCCCee-eEEEeCCCCcccCeEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910 218 WNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSK------DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 218 ~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d 289 (290)
||+++.+. +....+.. ...+-+.++|||+.++|++|+. .|.+.+||..+...+.++......|..+.|+|.
T Consensus 391 WDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPK 468 (641)
T ss_pred eeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecch
Confidence 99998654 33333332 4455678899999999999865 578999999999999999888889999999983
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.2e-35 Score=218.01 Aligned_cols=235 Identities=19% Similarity=0.325 Sum_probs=204.5
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe--eeeeeccccCCEEEEEECCCCCEEEEEeCCCc
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 130 (290)
.+.+.++++...+.|+.+...| ++..||+++ ...||+||++++. ++.++.+|...|+++.|..+|+++++|+.||+
T Consensus 29 tG~C~rTiqh~dsqVNrLeiTp-dk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt 106 (311)
T KOG0315|consen 29 TGICSRTIQHPDSQVNRLEITP-DKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT 106 (311)
T ss_pred cCeEEEEEecCccceeeEEEcC-Ccchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce
Confidence 4677788888888999999999 777887776 4789999999864 57889999999999999999999999999999
Q ss_pred EEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee-cCCCCeEEEEEcCCCCEEEEE
Q 022910 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTPDGKTICTG 209 (290)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~ 209 (290)
++|||++...+.+.++ +.++|+++..+|+...|++|..+|.|++||+....+...+. ....+|+++...|+|.+|+++
T Consensus 107 ~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~ 185 (311)
T KOG0315|consen 107 VKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAA 185 (311)
T ss_pred EEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEe
Confidence 9999999976666665 66899999999999999999999999999999886665543 355789999999999999999
Q ss_pred eCCCeEEEEcCCCCee---eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-cEEEEEccCCCcEEEEE
Q 022910 210 SDDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIG 285 (290)
Q Consensus 210 ~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~ 285 (290)
...|..++|++-+... +..+...+.|...+..+.+||++++||+++.|.+++||++.+. +....+++|...++..+
T Consensus 186 nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~ 265 (311)
T KOG0315|consen 186 NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCA 265 (311)
T ss_pred cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeee
Confidence 9999999999876432 2333334458889999999999999999999999999999988 77788899999999999
Q ss_pred EecCC
Q 022910 286 FSRSE 290 (290)
Q Consensus 286 ~s~d~ 290 (290)
||.||
T Consensus 266 FS~dg 270 (311)
T KOG0315|consen 266 FSADG 270 (311)
T ss_pred eccCc
Confidence 99886
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=216.42 Aligned_cols=226 Identities=28% Similarity=0.469 Sum_probs=193.9
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC---Ceeeeee-ccccCCEEEEEECCCCCEEEEEeCCC
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ---GDWASEI-QGHKDSVSSLAFSMDGQLLASGGLDG 129 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg 129 (290)
...++.+.+|++.|..++|+|..+.+||+|+.|+.|++|+... -.+...+ .+|+..|++++|+|.|++|+++|.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 3457889999999999999994388999999999999999985 2333333 37999999999999999999999999
Q ss_pred cEEEEcCCCC--ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc---cEEEeeecCCCCeEEEEEcCCCC
Q 022910 130 LVQIWDPSSG--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFTPDGK 204 (290)
Q Consensus 130 ~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~ 204 (290)
++.||.-..+ +++..+.+|...|.|++|+++|++||+++.|..|.||.+... .+...++.|...|..+.|+|...
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence 9999986644 678889999999999999999999999999999999998743 57888999999999999999999
Q ss_pred EEEEEeCCCeEEEEcCCC---CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc-cCCCc
Q 022910 205 TICTGSDDATLRVWNPKS---GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-SHTDS 280 (290)
Q Consensus 205 ~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~ 280 (290)
+|++++.|.+|++|.-.. ..+..++.+ |...|.+++|++.|..|++++.|++|+||-..+. +. .|...
T Consensus 164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g---~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~ 235 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDG---HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRA 235 (312)
T ss_pred eeEEeccCCeEEEEeecCCCCeeEEEEecC---ccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchhcccc
Confidence 999999999999998763 345677776 7779999999999999999999999999986522 22 24566
Q ss_pred EEEEEEe
Q 022910 281 IECIGFS 287 (290)
Q Consensus 281 v~~i~~s 287 (290)
++.++|.
T Consensus 236 ~Y~v~W~ 242 (312)
T KOG0645|consen 236 LYDVPWD 242 (312)
T ss_pred eEeeeec
Confidence 6666665
No 29
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-36 Score=236.67 Aligned_cols=207 Identities=27% Similarity=0.464 Sum_probs=191.8
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEEC-----------CCCC-
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS-----------MDGQ- 120 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~- 120 (290)
...++..+.||+.+|+|+.|- +..++++|+.|++|++|+...|++...+++|...|+.++.+ |.++
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~ 313 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRK 313 (480)
T ss_pred CceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccccccc
Confidence 456889999999999999997 45799999999999999999999999999999999999877 2233
Q ss_pred ------------------------EEEEEeCCCcEEEEcCCCC-ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEE
Q 022910 121 ------------------------LLASGGLDGLVQIWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM 175 (290)
Q Consensus 121 ------------------------~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i 175 (290)
.|++|+.|+++.+|+.... +++..+.+|..-|..+.|+|+++++|+++.|..|++
T Consensus 314 ~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkL 393 (480)
T KOG0271|consen 314 PKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKL 393 (480)
T ss_pred CCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceee
Confidence 4999999999999997654 578889999999999999999999999999999999
Q ss_pred EECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe
Q 022910 176 WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (290)
Q Consensus 176 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 255 (290)
|+.++++.+..+.+|-.+|+.++|+.+.++|++|+.|.++++|++++.+...-+.+ |...|.++.|+|||..+++|+
T Consensus 394 W~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG---h~DEVf~vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 394 WDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG---HADEVFAVDWSPDGQRVASGG 470 (480)
T ss_pred eeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC---CCceEEEEEecCCCceeecCC
Confidence 99999999999999999999999999999999999999999999999888777777 899999999999999999999
Q ss_pred CCCcEEEEE
Q 022910 256 KDGSVHMVN 264 (290)
Q Consensus 256 ~dg~i~~wd 264 (290)
.|..+++|.
T Consensus 471 kdkv~~lw~ 479 (480)
T KOG0271|consen 471 KDKVLRLWR 479 (480)
T ss_pred CceEEEeec
Confidence 999999994
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.6e-35 Score=244.20 Aligned_cols=230 Identities=28% Similarity=0.476 Sum_probs=204.6
Q ss_pred ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 135 (290)
.+...+||...+++++++| +++++|||+.||.|+|||...+-+..++..|+..|+.+.|+..++.+++.+.||+|+.||
T Consensus 342 YVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred eeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 4555678999999999999 889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCC-CCEEEEEEcCCCCEEEEeeCCCe-EEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 022910 136 PSSGNLKCTLEGPG-GGVEWVSWHPRGHIVLAGSEDST-VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (290)
Q Consensus 136 ~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 213 (290)
+...+..+++..+. ....|++..|.|.++++|+.|.. |.+|++++|+.+-.+.+|.+||.+++|+|.+..|++++.|.
T Consensus 421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence 99999888887654 35678888999999999998875 99999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc----------------
Q 022910 214 TLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS---------------- 276 (290)
Q Consensus 214 ~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~---------------- 276 (290)
+|++||+-... .+.++. +...+..++|.|+|+-|++++.||.|.+||++.+..+.++.+
T Consensus 501 TVRiW~if~s~~~vEtl~----i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta 576 (893)
T KOG0291|consen 501 TVRIWDIFSSSGTVETLE----IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITA 576 (893)
T ss_pred eEEEEEeeccCceeeeEe----eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeeh
Confidence 99999987542 345555 677899999999999999999999999999987766544332
Q ss_pred ----CCCcEEEEEEecCC
Q 022910 277 ----HTDSIECIGFSRSE 290 (290)
Q Consensus 277 ----~~~~v~~i~~s~d~ 290 (290)
....++.|++|+||
T Consensus 577 ~~sa~~K~Ftti~ySaDG 594 (893)
T KOG0291|consen 577 ENSAKGKTFTTICYSADG 594 (893)
T ss_pred hhcccCCceEEEEEcCCC
Confidence 12578999999987
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-34 Score=243.47 Aligned_cols=230 Identities=20% Similarity=0.407 Sum_probs=213.3
Q ss_pred eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC-CcEEEEcC
Q 022910 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD-GLVQIWDP 136 (290)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~ 136 (290)
..+......|+|.+|++ +..+|++|-..|...+|.+..-.+++.+.-...+|..+.|+..|.+||.|+.. |.+.||+.
T Consensus 259 ~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweW 337 (893)
T KOG0291|consen 259 HYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEW 337 (893)
T ss_pred eeecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEe
Confidence 33444458899999999 89999999999999999999999999998888899999999999999998764 89999999
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 022910 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 216 (290)
.+...+...++|...+++++++|+|.++|+|+.||.|+|||..++-++.++..|.+.|+.+.|+..++.+++++.||+|+
T Consensus 338 qsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVR 417 (893)
T KOG0291|consen 338 QSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVR 417 (893)
T ss_pred eccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-SVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
.||+...+..+++... ......+++..|.|.++.+|+.|. .|++|++++|+++-.+.+|.+||.+++|+|+|
T Consensus 418 AwDlkRYrNfRTft~P--~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~ 490 (893)
T KOG0291|consen 418 AWDLKRYRNFRTFTSP--EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG 490 (893)
T ss_pred eeeecccceeeeecCC--CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc
Confidence 9999999999888864 355678899999999999999887 69999999999999999999999999999975
No 32
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-34 Score=232.98 Aligned_cols=237 Identities=24% Similarity=0.394 Sum_probs=198.7
Q ss_pred CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec---cccCCEEEEEECCCCCEEEEEeCC
Q 022910 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDGQLLASGGLD 128 (290)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d 128 (290)
+|-+....++.|+.-|+|+.|+| ++.+|++.+.||++.+||-.+++.+..+. +|++.|.+++|+||++.|++++.|
T Consensus 178 PPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD 256 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD 256 (603)
T ss_pred CCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC
Confidence 35666777788999999999999 78999999999999999999999999887 899999999999999999999999
Q ss_pred CcEEEEcCCCCceEEE-------------------------------------------EecCCCCEEEEEEcCCCCEEE
Q 022910 129 GLVQIWDPSSGNLKCT-------------------------------------------LEGPGGGVEWVSWHPRGHIVL 165 (290)
Q Consensus 129 g~i~i~d~~~~~~~~~-------------------------------------------~~~~~~~i~~i~~~~~~~~l~ 165 (290)
.+++|||+.+.+++.+ +.+|...|+++..+|++++|+
T Consensus 257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~ 336 (603)
T KOG0318|consen 257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY 336 (603)
T ss_pred ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence 9999999886654433 467888999999999999999
Q ss_pred EeeCCCeEEEEECCcccEE-------------------------------Eee---------------------------
Q 022910 166 AGSEDSTVWMWNADRAAYL-------------------------------NMF--------------------------- 187 (290)
Q Consensus 166 ~~~~dg~i~i~d~~~~~~~-------------------------------~~~--------------------------- 187 (290)
+|+.||.|.-|+..++..- +.+
T Consensus 337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d 416 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD 416 (603)
T ss_pred eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence 9999999999998754210 000
Q ss_pred ---------------ec--------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEE
Q 022910 188 ---------------SG--------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI 244 (290)
Q Consensus 188 ---------------~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 244 (290)
+. ..-...+++++|++..+++|+.||.|+||.+............ .|..+|+.+++
T Consensus 417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~vay 495 (603)
T KOG0318|consen 417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL-EHRAAITDVAY 495 (603)
T ss_pred CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee-cccCCceEEEE
Confidence 00 0123467899999999999999999999999876543332221 28999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc-cCCCcEEEEEEecCC
Q 022910 245 SADSTLALSGSKDGSVHMVNITTGKVVSSLV-SHTDSIECIGFSRSE 290 (290)
Q Consensus 245 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~s~d~ 290 (290)
+|++.|||+|...+.+.+||+.+.+.....- -|...|.+++|+|+.
T Consensus 496 Spd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n 542 (603)
T KOG0318|consen 496 SPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN 542 (603)
T ss_pred CCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc
Confidence 9999999999999999999999888744433 499999999999973
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-35 Score=242.87 Aligned_cols=231 Identities=23% Similarity=0.370 Sum_probs=215.9
Q ss_pred CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (290)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (290)
...+.+..|+..|.++.|+| ....++++-.+|.|.||+.++...++.+....-||++..|-+..+++++|+.|..|+||
T Consensus 4 ~~krk~~~rSdRVKsVd~HP-tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 4 DFKRKFQSRSDRVKSVDFHP-TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred hhhhHhhccCCceeeeecCC-CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence 34566777999999999999 55666678889999999999999999999889999999999999999999999999999
Q ss_pred cCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcC-CCCEEEEEeCC
Q 022910 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDD 212 (290)
Q Consensus 135 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 212 (290)
+..+++.+..|..|...|++++.||..+++++++.|-.|++||-+.. .+.+++.+|...|++++|.| +.+.+++++.|
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence 99999999999999999999999999999999999999999998765 67889999999999999999 77899999999
Q ss_pred CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d 289 (290)
++|+||.+.+..+..++.+ |..+|+++.+-+ |..+|++|+.|.+|+|||.++..+++++.+|...|+.+.|+|.
T Consensus 163 rTVKVWslgs~~~nfTl~g---HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~ 238 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEG---HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPE 238 (794)
T ss_pred ccEEEEEcCCCCCceeeec---cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCC
Confidence 9999999999999999997 899999999988 4579999999999999999999999999999999999999984
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.8e-33 Score=227.04 Aligned_cols=231 Identities=32% Similarity=0.612 Sum_probs=212.0
Q ss_pred ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 135 (290)
....+.+|...+..+.|+| ++.++++++.+|.|++|++.+++....+..|...+.++.|+++++++++++.+|.|++|+
T Consensus 43 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 121 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121 (289)
T ss_pred cEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 6678889999999999999 667888999999999999999888888888999999999999988888888899999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (290)
Q Consensus 136 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 215 (290)
+.+++....+..|...+.+++|+|++.++++++.++.|++||+++++.+..+..+...+.++.|+|+++.+++++.++.|
T Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 201 (289)
T cd00200 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201 (289)
T ss_pred CCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence 99998888888888899999999999999988889999999999998888888888899999999999999999999999
Q ss_pred EEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
++||+++++.+..+.. +...+.++.|+|++.++++++.+|.|++|++.+++.+..+..|...|.+++|+|++
T Consensus 202 ~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 273 (289)
T cd00200 202 KLWDLSTGKCLGTLRG---HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDG 273 (289)
T ss_pred EEEECCCCceecchhh---cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCC
Confidence 9999998887777654 67799999999998899888889999999999999999999999999999999974
No 35
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=2.4e-33 Score=240.55 Aligned_cols=232 Identities=16% Similarity=0.293 Sum_probs=187.0
Q ss_pred CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe--------eeeeeccccCCEEEEEECCCCCE-EEEE
Q 022910 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--------WASEIQGHKDSVSSLAFSMDGQL-LASG 125 (290)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~-l~~~ 125 (290)
.++..+.+|.++|.+++|+|..+.+|++|+.||+|+||++.++. .+..+.+|...|.+++|+|++.. |+++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 46788999999999999999667899999999999999997642 33467789999999999999875 5788
Q ss_pred eCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEE-----EEEc
Q 022910 126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC-----GDFT 200 (290)
Q Consensus 126 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~-----~~~~ 200 (290)
+.|++|+|||+.+++.+..+. +...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.+|.+.+.+ ..|+
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs 223 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLG 223 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEc
Confidence 999999999999998877776 5567999999999999999999999999999999999999988876533 2345
Q ss_pred CCCCEEEEEeCCC----eEEEEcCCC-CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910 201 PDGKTICTGSDDA----TLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (290)
Q Consensus 201 ~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 275 (290)
+++.+|++++.++ .|+|||+++ ..++..+.. ..+...+......+++.++++|+.|+.|++|++..+. +..+.
T Consensus 224 ~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l-d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~ 301 (568)
T PTZ00420 224 GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI-DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVN 301 (568)
T ss_pred CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-cCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeec
Confidence 8888999887764 799999995 445544432 1133333333445568899999999999999998764 33333
Q ss_pred c--CCCcEEEEEEecC
Q 022910 276 S--HTDSIECIGFSRS 289 (290)
Q Consensus 276 ~--~~~~v~~i~~s~d 289 (290)
. +..++.+++|.|.
T Consensus 302 ~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 302 EYKSCSPFRSFGFLPK 317 (568)
T ss_pred ccccCCCccceEEccc
Confidence 2 4578999999985
No 36
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.3e-36 Score=234.55 Aligned_cols=222 Identities=23% Similarity=0.509 Sum_probs=199.7
Q ss_pred CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (290)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (290)
....+.+.|.||++.|.|+.|.. .++++|+.|.+|++||+++++++.++-.|...|..+.|+ +.++++++.|.++
T Consensus 225 n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsi 299 (499)
T KOG0281|consen 225 NSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSI 299 (499)
T ss_pred ccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCcee
Confidence 34678889999999999999965 599999999999999999999999999999999999994 5699999999999
Q ss_pred EEEcCCCCce---EEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEE
Q 022910 132 QIWDPSSGNL---KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT 208 (290)
Q Consensus 132 ~i~d~~~~~~---~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 208 (290)
.+||+....- ...+.+|...|+.+.|+ .+++++++.|.+|++|++.++..++++.+|...|.|+.+ .++++++
T Consensus 300 aVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVS 375 (499)
T KOG0281|consen 300 AVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVS 375 (499)
T ss_pred EEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEe
Confidence 9999987643 34567899999999995 569999999999999999999999999999999999988 5889999
Q ss_pred EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc---------EEEEEccCCC
Q 022910 209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK---------VVSSLVSHTD 279 (290)
Q Consensus 209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---------~~~~~~~~~~ 279 (290)
|+.|.+|++||+..|.++..+.+ |..-|.++.| +.+.+++|+.||+|++||+..+. ++.++..|.+
T Consensus 376 GSSDntIRlwdi~~G~cLRvLeG---HEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsg 450 (499)
T KOG0281|consen 376 GSSDNTIRLWDIECGACLRVLEG---HEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSG 450 (499)
T ss_pred cCCCceEEEEeccccHHHHHHhc---hHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccc
Confidence 99999999999999999999988 8899999999 56789999999999999998753 4566677888
Q ss_pred cEEEEEEe
Q 022910 280 SIECIGFS 287 (290)
Q Consensus 280 ~v~~i~~s 287 (290)
.|..+.|.
T Consensus 451 RVFrLQFD 458 (499)
T KOG0281|consen 451 RVFRLQFD 458 (499)
T ss_pred eeEEEeec
Confidence 99988885
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.7e-35 Score=244.32 Aligned_cols=235 Identities=25% Similarity=0.435 Sum_probs=209.0
Q ss_pred CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe----eeeeeccccCCEEEEEECCCC-CEEEEEe
Q 022910 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSVSSLAFSMDG-QLLASGG 126 (290)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~l~~~~ 126 (290)
.++..-..+.||+..|.++.... .+.+|+||+.|.++++|.++++. ++....+|.+.|.+++++..+ .+|+++|
T Consensus 353 ~~~~~c~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS 431 (775)
T KOG0319|consen 353 LPTSYCQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS 431 (775)
T ss_pred cCCCceEEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEec
Confidence 34555568899999999999444 55899999999999999885432 344567899999999997655 4899999
Q ss_pred CCCcEEEEcCCCCce-----E----EEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEE
Q 022910 127 LDGLVQIWDPSSGNL-----K----CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG 197 (290)
Q Consensus 127 ~dg~i~i~d~~~~~~-----~----~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~ 197 (290)
.|+++++|++...+. . .+...|...|++++++|+.+++|||+.|.+.+||++.......++.+|...|.++
T Consensus 432 ~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V 511 (775)
T KOG0319|consen 432 QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCV 511 (775)
T ss_pred CCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEE
Confidence 999999999976221 1 1234688899999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC
Q 022910 198 DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH 277 (290)
Q Consensus 198 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 277 (290)
.|+|..+.++++|.|++|+||.+.+..+++++.+ |...|-.+.|-.++..|++++.||-|++|+++++.++.++.+|
T Consensus 512 ~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG---H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H 588 (775)
T KOG0319|consen 512 SFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG---HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH 588 (775)
T ss_pred EeccccceeEeccCCceEEEEEeccceeeeeecC---ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc
Confidence 9999999999999999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEecCC
Q 022910 278 TDSIECIGFSRSE 290 (290)
Q Consensus 278 ~~~v~~i~~s~d~ 290 (290)
+..|++++-+|.+
T Consensus 589 ~DrvWaL~~~~~~ 601 (775)
T KOG0319|consen 589 NDRVWALSVSPLL 601 (775)
T ss_pred cceeEEEeecCcc
Confidence 9999999988753
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.9e-34 Score=220.87 Aligned_cols=189 Identities=29% Similarity=0.505 Sum_probs=181.0
Q ss_pred eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEEC
Q 022910 99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178 (290)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~ 178 (290)
....+.+|.+.|.|+++.|.+.+|++|+.|++++|||+.++++..++.+|...+..+++++-..|+++++.|+.|+.||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 44557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC
Q 022910 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258 (290)
Q Consensus 179 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 258 (290)
...+.++.+.+|-+.|.|++.+|.-+.|++|+.|.+++|||+++...+..+.+ |..+|..+.+.|-...+++|+.|+
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G---H~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG---HTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC---CCCcceeEEeecCCCceEEecCCc
Confidence 99999999999999999999999999999999999999999999999999998 889999999999777899999999
Q ss_pred cEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 259 SVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 259 ~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
+|++||++.|+...++..|+..|++++.+|.+
T Consensus 300 tvrlWDl~agkt~~tlt~hkksvral~lhP~e 331 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLTHHKKSVRALCLHPKE 331 (460)
T ss_pred eEEEeeeccCceeEeeecccceeeEEecCCch
Confidence 99999999999999999999999999999863
No 39
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-34 Score=233.56 Aligned_cols=229 Identities=23% Similarity=0.364 Sum_probs=210.0
Q ss_pred ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 135 (290)
.++.+.-..-+|.+..|-+ ..+.+++|+.|..|++|++.+++.+..+..|..-|++++.+|...+++++|.|-+|++|+
T Consensus 47 mVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~ 125 (794)
T KOG0276|consen 47 MVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWD 125 (794)
T ss_pred eeeeeeecccchhhheeee-ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEee
Confidence 4555556677888999988 788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-ceEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCC--CEEEEEeC
Q 022910 136 PSSG-NLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG--KTICTGSD 211 (290)
Q Consensus 136 ~~~~-~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~ 211 (290)
.+.. .+.+++.+|...|.+++|+| +.+.+++++-|++|++|.+.+..+..++.+|...|.|+.|-+.| .+|++|+.
T Consensus 126 we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD 205 (794)
T KOG0276|consen 126 WENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD 205 (794)
T ss_pred ccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC
Confidence 9876 67789999999999999999 56799999999999999999999999999999999999999844 69999999
Q ss_pred CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR 288 (290)
Q Consensus 212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~ 288 (290)
|.+|+|||..+..+++++.+ |...|..++|+|.-.++++|+.||++++|+..+-++..++.-.-..|++|+-.+
T Consensus 206 D~tiKvWDyQtk~CV~TLeG---Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k 279 (794)
T KOG0276|consen 206 DLTIKVWDYQTKSCVQTLEG---HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK 279 (794)
T ss_pred CceEEEeecchHHHHHHhhc---ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC
Confidence 99999999999999999998 889999999999999999999999999999999888887776667888887554
No 40
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=221.45 Aligned_cols=239 Identities=22% Similarity=0.453 Sum_probs=200.7
Q ss_pred CCCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC---eeeeeeccccCCEEEEEECCCCCEEEEE
Q 022910 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---DWASEIQGHKDSVSSLAFSMDGQLLASG 125 (290)
Q Consensus 49 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 125 (290)
....|.+..+.+..|++.|.-+.|++ +|++||+++.|.+..+|.+... +..+++.+|..+|..+.|+||.++|++|
T Consensus 209 ~~qip~qt~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 209 RLQIPSQTWQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred cccCCchhhhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec
Confidence 45578888999999999999999999 8899999999999999998654 4577888999999999999999999999
Q ss_pred eCCCcEEEEcCCCCceEEEEec-CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE---------------------
Q 022910 126 GLDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--------------------- 183 (290)
Q Consensus 126 ~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------------- 183 (290)
+.+..+.+||+.+|.....+.. +...+.+.+|.|+|..+++|+.|+.|..||+.....
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCc
Confidence 9999999999999998877764 356899999999999999999999999999864310
Q ss_pred -EEe-------------------eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEE
Q 022910 184 -LNM-------------------FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT 243 (290)
Q Consensus 184 -~~~-------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 243 (290)
+.. +.....+|++++.|.+++++++.-.+..|++||+.....+..+.+++.. .-+..-|
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~-~fiIrSC 446 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQG-HFIIRSC 446 (519)
T ss_pred EEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccccc-ceEEEec
Confidence 000 0112457788888888888888888888888888877777777776532 3344445
Q ss_pred EcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910 244 ISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 244 ~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d 289 (290)
|.- +..++++|+.|+.|++|+..+++++..+.+|...|++++|+|.
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence 654 5689999999999999999999999999999999999999995
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.3e-32 Score=211.88 Aligned_cols=209 Identities=22% Similarity=0.396 Sum_probs=190.0
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 132 (290)
..+....+.+|++.|+++.|+. ++.+||||..+|.|+||...++.....+...-..|.=+.|+|.+..|+.|+.||.+.
T Consensus 95 ~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvW 173 (399)
T KOG0296|consen 95 TGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVW 173 (399)
T ss_pred CCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEE
Confidence 4557888899999999999999 889999999999999999999998888876667788899999999999999999999
Q ss_pred EEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee------------------------
Q 022910 133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS------------------------ 188 (290)
Q Consensus 133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------------------ 188 (290)
.|.+.++...+.+.+|..++++=.|.|+|+.++++..||+|++|++.+++++.++.
T Consensus 174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence 99999988899999999999999999999999999999999999999876543332
Q ss_pred -----------------------------------------------------------------------cCCCCeEEE
Q 022910 189 -----------------------------------------------------------------------GHGSSVTCG 197 (290)
Q Consensus 189 -----------------------------------------------------------------------~~~~~i~~~ 197 (290)
.|..+|..+
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l 333 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKL 333 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEE
Confidence 135668888
Q ss_pred EEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910 198 DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (290)
Q Consensus 198 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 266 (290)
.|.+ ..+|++++.+|.|+.||.|+|++...+.+ |...|..++++|+.+++++++.|++.+||++.
T Consensus 334 ~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G---H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 334 KWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG---HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEcC-cchheeeccCceEEeeeccccceEEEEec---CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9988 67899999999999999999999999998 88999999999999999999999999999864
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-33 Score=238.04 Aligned_cols=233 Identities=22% Similarity=0.355 Sum_probs=210.2
Q ss_pred CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (290)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (290)
..+..|..|.++|..++|+| .+.+|++|+.|-.|++|++.+.+++.++.+|-.-|+.+.|++.-.+|+++|.|.+|+||
T Consensus 42 tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIW 120 (1202)
T KOG0292|consen 42 TLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIW 120 (1202)
T ss_pred hHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEE
Confidence 34567778999999999999 88899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc-----------------------------EEE
Q 022910 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-----------------------------YLN 185 (290)
Q Consensus 135 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------------------------~~~ 185 (290)
+..+.+++..+.+|...|.|..|+|....+++++-|.+|++||+...+ ...
T Consensus 121 Nwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 121 NWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH 200 (1202)
T ss_pred eccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence 999999999999999999999999999999999999999999985311 123
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910 186 MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (290)
Q Consensus 186 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~ 265 (290)
.+.+|...|..++|+|.-.+|++|+.|..|++|.+...+. ..+....+|...|+++.|+|...++++.+.|++|++||+
T Consensus 201 VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 201 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred eecccccccceEEecCCcceEEecCCcceeeEEEeccccc-eeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence 4568999999999999999999999999999999875443 444444559999999999999999999999999999999
Q ss_pred CCCcEEEEEccCCCcEEEEEEecC
Q 022910 266 TTGKVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 266 ~~~~~~~~~~~~~~~v~~i~~s~d 289 (290)
...+.++++.-.++..+.++-+|.
T Consensus 280 ~kRt~v~tfrrendRFW~laahP~ 303 (1202)
T KOG0292|consen 280 TKRTSVQTFRRENDRFWILAAHPE 303 (1202)
T ss_pred ccccceeeeeccCCeEEEEEecCC
Confidence 999999999877788888888875
No 43
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=9.3e-33 Score=215.07 Aligned_cols=237 Identities=24% Similarity=0.440 Sum_probs=203.2
Q ss_pred CCCCCceeeeccCCcCEEEEEECCCC--CcEEEEecCCCcEEEEEccCCeee----eeeccccCCEEEEEECCCCCEEEE
Q 022910 51 EQPDDSTHIFSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRINQGDWA----SEIQGHKDSVSSLAFSMDGQLLAS 124 (290)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~ 124 (290)
+..++....+.||.++|.+++|...+ ...|++++.|.++++|.++.+... ..-.+|...|-++...+++..+++
T Consensus 131 d~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~S 210 (423)
T KOG0313|consen 131 DLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCS 210 (423)
T ss_pred ecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEe
Confidence 35788999999999999998886522 236999999999999999876543 233589999999999999999999
Q ss_pred EeCCCcEEEEcCC-------------------------CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECC
Q 022910 125 GGLDGLVQIWDPS-------------------------SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (290)
Q Consensus 125 ~~~dg~i~i~d~~-------------------------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~ 179 (290)
|+.|..|.||+.. +..++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.
T Consensus 211 gS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDle 289 (423)
T KOG0313|consen 211 GSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLE 289 (423)
T ss_pred ecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEee
Confidence 9999999999932 1235667889999999999997 7799999999999999999
Q ss_pred cccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCC
Q 022910 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDG 258 (290)
Q Consensus 180 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg 258 (290)
++..+..+. .+..+.++.++|..++|++|+.|..|++||.+++.--........|...|.++.|+| +...|++|+.|+
T Consensus 290 tg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 290 TGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred cccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence 999888887 456799999999999999999999999999998754333333333888999999999 556789999999
Q ss_pred cEEEEEcCCCc-EEEEEccCCCcEEEEEEecC
Q 022910 259 SVHMVNITTGK-VVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 259 ~i~~wd~~~~~-~~~~~~~~~~~v~~i~~s~d 289 (290)
++++||+++.+ ++..+.+|...|.++.|+.-
T Consensus 369 t~klWDvRS~k~plydI~~h~DKvl~vdW~~~ 400 (423)
T KOG0313|consen 369 TVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG 400 (423)
T ss_pred eEEEEEeccCCCcceeeccCCceEEEEeccCC
Confidence 99999999988 99999999999999999754
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.2e-32 Score=246.25 Aligned_cols=224 Identities=19% Similarity=0.380 Sum_probs=192.9
Q ss_pred eccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC----e----eeeeeccccCCEEEEEECC-CCCEEEEEeCCCc
Q 022910 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----D----WASEIQGHKDSVSSLAFSM-DGQLLASGGLDGL 130 (290)
Q Consensus 60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~----~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~ 130 (290)
+.+|.+.|.+++|+| ++.+||+|+.|+.|+||++... . ....+. +...+.+++|++ .+.+|++++.||+
T Consensus 479 ~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 479 LLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred ccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 445899999999999 7889999999999999997542 1 122233 356799999987 4779999999999
Q ss_pred EEEEcCCCCceEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEc-CCCCEEEE
Q 022910 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT-PDGKTICT 208 (290)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~ 208 (290)
|++||+.+++.+..+..|...|++++|+| ++.+|++|+.||.|++||++++..+..+..+ ..+.++.|+ +++.+|++
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence 99999999999999999999999999997 7889999999999999999999888888754 678999995 47899999
Q ss_pred EeCCCeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------CcEEEEEccCCCcE
Q 022910 209 GSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT------GKVVSSLVSHTDSI 281 (290)
Q Consensus 209 ~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~------~~~~~~~~~~~~~v 281 (290)
|+.||.|++||+++.+ .+..+.+ |...|.++.|. ++.+|++++.|++|++||++. .+++..+.+|...+
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~---h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i 711 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIG---HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK 711 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecC---CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe
Confidence 9999999999998765 3445554 78899999997 678999999999999999974 36788999999999
Q ss_pred EEEEEecCC
Q 022910 282 ECIGFSRSE 290 (290)
Q Consensus 282 ~~i~~s~d~ 290 (290)
..++|+|++
T Consensus 712 ~~v~~s~~~ 720 (793)
T PLN00181 712 NFVGLSVSD 720 (793)
T ss_pred eEEEEcCCC
Confidence 999999875
No 45
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=9.2e-32 Score=245.57 Aligned_cols=222 Identities=22% Similarity=0.347 Sum_probs=192.6
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC-CCCEEEEEeCCCcEEEEcCCCCceE
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM-DGQLLASGGLDGLVQIWDPSSGNLK 142 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~ 142 (290)
...|.+++|+|..+.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||+.++..+
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence 468999999986778999999999999999999999999999999999999997 7889999999999999999999888
Q ss_pred EEEecCCCCEEEEEEc-CCCCEEEEeeCCCeEEEEECCccc-EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC
Q 022910 143 CTLEGPGGGVEWVSWH-PRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (290)
Q Consensus 143 ~~~~~~~~~i~~i~~~-~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 220 (290)
..+..+ ..+.++.|+ +++.+|++|+.||.|++||+++.+ .+..+.+|...|.++.|. ++.+|++++.|+.|++||+
T Consensus 612 ~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 612 GTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred EEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeC
Confidence 888754 579999995 578999999999999999998765 567778899999999997 6789999999999999999
Q ss_pred CCC------eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE-------------ccCCCcE
Q 022910 221 KSG------ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL-------------VSHTDSI 281 (290)
Q Consensus 221 ~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-------------~~~~~~v 281 (290)
+.+ .++..+.+ |...+.+++|+|++.+|++|+.||.|++|+.....++..+ ..|...|
T Consensus 690 ~~~~~~~~~~~l~~~~g---h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V 766 (793)
T PLN00181 690 SMSISGINETPLHSFMG---HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFI 766 (793)
T ss_pred CCCccccCCcceEEEcC---CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEE
Confidence 753 44556655 7788999999999999999999999999998766544332 2344679
Q ss_pred EEEEEecCC
Q 022910 282 ECIGFSRSE 290 (290)
Q Consensus 282 ~~i~~s~d~ 290 (290)
++++|+|++
T Consensus 767 ~~v~ws~~~ 775 (793)
T PLN00181 767 SSVCWRGQS 775 (793)
T ss_pred EEEEEcCCC
Confidence 999999975
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-33 Score=240.37 Aligned_cols=231 Identities=23% Similarity=0.363 Sum_probs=208.3
Q ss_pred eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC
Q 022910 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (290)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 137 (290)
..|...+..|..++|+| ....++++-.+|.|++||.+.+.++..+..|.++|+.+.|+|.+.+|++|+.|-.|+||+..
T Consensus 3 tkfEskSsRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred chhhcccccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 34566778999999999 77788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 022910 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217 (290)
Q Consensus 138 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 217 (290)
+.+++.++.+|...|+.+.||+.-.++++++.|.+|+||+..+++++..+++|...|+|..|+|....++++|-|.+|||
T Consensus 82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCeeeEE-----------------E---------eCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--
Q 022910 218 WNPKSGENIHV-----------------I---------RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK-- 269 (290)
Q Consensus 218 ~d~~~~~~~~~-----------------~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-- 269 (290)
||+...+.... + ....+|..+|+.++|+|.-.++++|+.|..|++|.+...+
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 241 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence 99853211000 0 0112388999999999999999999999999999987655
Q ss_pred EEEEEccCCCcEEEEEEecC
Q 022910 270 VVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 270 ~~~~~~~~~~~v~~i~~s~d 289 (290)
.+-+..+|.++|+++-|+|.
T Consensus 242 EvDtcrgH~nnVssvlfhp~ 261 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPH 261 (1202)
T ss_pred eehhhhcccCCcceEEecCc
Confidence 46678899999999999994
No 47
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-33 Score=208.14 Aligned_cols=223 Identities=20% Similarity=0.372 Sum_probs=194.3
Q ss_pred CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-CeeeeeeccccCCEEEEEECCC-CCEEEEEeCCCcEEEEcCCCCc
Q 022910 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGN 140 (290)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~ 140 (290)
-.+.+..++|++...+.+++++.||+++|||+.. ..++..++.|...|.++.|++- ++.++++|.|++|++|+...++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 4678999999998889999999999999999754 4577889999999999999984 4578888999999999999999
Q ss_pred eEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEE
Q 022910 141 LKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVW 218 (290)
Q Consensus 141 ~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~ 218 (290)
.++++++|...|...+|+| ..+.+++++.|+++++||++..-....+..|...|.++.|+. +.+.|++|+.|+.|++|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 9999999999999999999 467999999999999999987654555888999999999998 66788999999999999
Q ss_pred cCCCCee-eEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC-CcEEEEEccCCCcEEEEEEec
Q 022910 219 NPKSGEN-IHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITT-GKVVSSLVSHTDSIECIGFSR 288 (290)
Q Consensus 219 d~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~i~~s~ 288 (290)
|+++.+. +..+.+ |.-.|..+.||| ...+|++++.|-++++||... ..++.+..-|..-|.++.||+
T Consensus 219 Dir~~r~pl~eL~g---h~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~ 288 (311)
T KOG0277|consen 219 DIRNLRTPLFELNG---HGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSL 288 (311)
T ss_pred ehhhccccceeecC---CceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccccc
Confidence 9997653 445544 888999999999 457899999999999999874 446667778888888988886
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.7e-35 Score=224.75 Aligned_cols=212 Identities=26% Similarity=0.510 Sum_probs=193.6
Q ss_pred CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceE
Q 022910 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK 142 (290)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 142 (290)
..+.|+|+.+.. ..+++|..|.+|+|||.++..+...+.+|++.|.|+.| +.+.|++|+.|.+|+|||+++++++
T Consensus 196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred cCCceEEEEecc---hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchh
Confidence 456899999863 46889999999999999999999999999999999999 5679999999999999999999999
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc---EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEc
Q 022910 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (290)
Q Consensus 143 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 219 (290)
.++-.|...|..+.|+ ..++++++.|.+|.+||+.... +.+.+.+|...|..+.|+ .+++++++.|.+|++|+
T Consensus 271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWS 346 (499)
T ss_pred hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEe
Confidence 9999999999999996 5699999999999999998764 345677899999999995 56999999999999999
Q ss_pred CCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR 288 (290)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~ 288 (290)
+.+++.+.++.+ |..+|.|+.+ .++++++|++|.+|++||+..|++++.+++|+.-|++|.|..
T Consensus 347 ~st~efvRtl~g---HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~ 410 (499)
T KOG0281|consen 347 TSTCEFVRTLNG---HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 410 (499)
T ss_pred ccceeeehhhhc---ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC
Confidence 999999999888 8888988888 589999999999999999999999999999999999999864
No 49
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-32 Score=201.66 Aligned_cols=226 Identities=20% Similarity=0.367 Sum_probs=204.8
Q ss_pred eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC
Q 022910 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (290)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 137 (290)
..++||..+++-+.|+. ++.+|.+++.|.+..+|-..+|+.+.++.+|++.|+|+..+-+.+++++|+.|.++++||+.
T Consensus 4 i~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 45789999999999999 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCEEEEEEcCCCCEEEEeeC-----CCeEEEEECC-------cccEEEeeecCCCCeEEEEEcCCCCE
Q 022910 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-----DSTVWMWNAD-------RAAYLNMFSGHGSSVTCGDFTPDGKT 205 (290)
Q Consensus 138 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~ 205 (290)
+|+.+..++. ..+|..+.|++.|++++.+.. .+.|.++|++ ...++.++..+.+.++.+-|.|-+.+
T Consensus 83 tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 83 TGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred CCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 9999999984 457999999999998887654 4679999998 44567788888899999999999999
Q ss_pred EEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEE
Q 022910 206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIG 285 (290)
Q Consensus 206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~ 285 (290)
|++|..+|.|.+||+++++.+... ...|...|+.|+++|+..++++++.|.+-++||+.+-.+++++.. ..||++.+
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s--~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aa 238 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDS--DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAA 238 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeec--hhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-ccccccee
Confidence 999999999999999998654333 223888999999999999999999999999999999999999986 67999999
Q ss_pred Eec
Q 022910 286 FSR 288 (290)
Q Consensus 286 ~s~ 288 (290)
++|
T Consensus 239 isP 241 (327)
T KOG0643|consen 239 ISP 241 (327)
T ss_pred ccc
Confidence 998
No 50
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6e-34 Score=218.23 Aligned_cols=236 Identities=24% Similarity=0.390 Sum_probs=205.6
Q ss_pred CCCceeeec-cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec--------cccCCEEEEEECCCCCEEE
Q 022910 53 PDDSTHIFS-GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--------GHKDSVSSLAFSMDGQLLA 123 (290)
Q Consensus 53 ~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~ 123 (290)
|....+.++ |.+..+-|..|+| ++++|++|+.||.|.+|+..+|+..+.++ -+..+|.|+.|+.+...+|
T Consensus 201 Pt~l~r~IKFg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlA 279 (508)
T KOG0275|consen 201 PTQLARSIKFGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLA 279 (508)
T ss_pred hHHhhhheecccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhh
Confidence 344444333 4566788999999 88999999999999999999988766543 3678999999999999999
Q ss_pred EEeCCCcEEEEcCCCCceEEEEe-cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCC
Q 022910 124 SGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD 202 (290)
Q Consensus 124 ~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 202 (290)
+|+.||.|++|.+.+|.++..|. .|...|+|+.|+.++..+++++.|.++++.-+.++++++.+.+|.+.|+...|.++
T Consensus 280 sGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 280 SGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD 359 (508)
T ss_pred ccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCC
Confidence 99999999999999999999987 79999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC--------------------------------------------CcccC
Q 022910 203 GKTICTGSDDATLRVWNPKSGENIHVIRGHP--------------------------------------------YHTEG 238 (290)
Q Consensus 203 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------------------------------------------~~~~~ 238 (290)
|..+++++.||+|++|+.++.+++.+++... ...+.
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGd 439 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGD 439 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCc
Confidence 9999999999999999998877655443221 02233
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910 239 LTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 239 v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d 289 (290)
..+.+++|.|.++++.+.|+.++.|.+.+|++-+++..|...|-+++-+|.
T Consensus 440 Fi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPH 490 (508)
T KOG0275|consen 440 FINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPH 490 (508)
T ss_pred eEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcc
Confidence 456678999999999999999999999999999999999988888887774
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.1e-32 Score=201.08 Aligned_cols=219 Identities=23% Similarity=0.435 Sum_probs=190.0
Q ss_pred ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC--eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCC
Q 022910 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG--DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS 138 (290)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 138 (290)
.+|+..|++++|+| .+++||+|+.|.++.||.-..+ +++..+.+|...|.|++|+++|++||+++.|.+|-||.+..
T Consensus 58 ~~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de 136 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSP-HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE 136 (312)
T ss_pred ccchheeeeeeecC-CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC
Confidence 47999999999999 7789999999999999987654 57788999999999999999999999999999999999874
Q ss_pred C---ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECC---cccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 022910 139 G---NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD---RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (290)
Q Consensus 139 ~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 212 (290)
+ .+...++.|...|..+.|||...+|++++.|.+|++|.-. .-.+.+++.+|...|.+++|+|.|..|++++.|
T Consensus 137 ddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD 216 (312)
T KOG0645|consen 137 DDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD 216 (312)
T ss_pred CCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC
Confidence 4 5677889999999999999999999999999999999876 236889999999999999999999999999999
Q ss_pred CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC------cEEE-EEccCCCcEEEEE
Q 022910 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG------KVVS-SLVSHTDSIECIG 285 (290)
Q Consensus 213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~------~~~~-~~~~~~~~v~~i~ 285 (290)
++|+||-..+. +.. .|...+..+.|. ...|++++.|+.|++|.-... +++. .-..|...|++++
T Consensus 217 ~tv~Iw~~~~~-----~~~--~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~ 287 (312)
T KOG0645|consen 217 GTVSIWRLYTD-----LSG--MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQ 287 (312)
T ss_pred cceEeeeeccC-----cch--hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEE
Confidence 99999987622 222 277889999998 558999999999999986542 1222 3346888999999
Q ss_pred EecC
Q 022910 286 FSRS 289 (290)
Q Consensus 286 ~s~d 289 (290)
|.|.
T Consensus 288 w~p~ 291 (312)
T KOG0645|consen 288 WNPK 291 (312)
T ss_pred EcCC
Confidence 9993
No 52
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2.6e-32 Score=207.84 Aligned_cols=225 Identities=23% Similarity=0.381 Sum_probs=196.1
Q ss_pred CCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC------------------CeeeeeeccccCCEEE
Q 022910 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------------------GDWASEIQGHKDSVSS 112 (290)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------------------~~~~~~~~~~~~~i~~ 112 (290)
+.+.-....+..|+.++.+.+|+| ++.++|+|+.|..|+|.|++. ...++++..|...|++
T Consensus 99 e~~~yEt~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~ 177 (430)
T KOG0640|consen 99 EPSEYETKYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVND 177 (430)
T ss_pred CCcccceEEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccc
Confidence 344556788899999999999999 899999999999999999862 1246677789999999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEe--cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee--
Q 022910 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-- 188 (290)
Q Consensus 113 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-- 188 (290)
+.|+|....|++++.|++|++||+......+.++ ....++.++.|+|.|.+|++|....++++||+.+.++.....
T Consensus 178 l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 178 LDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred eeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc
Confidence 9999999999999999999999997654332222 244579999999999999999999999999999988765543
Q ss_pred -cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910 189 -GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 189 -~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 267 (290)
.|...|+++.+++.+++.++++.||.|++||--+++++.++.... ....|++..|..+++|+++.+.|..+++|.+.+
T Consensus 258 ~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 258 DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-GGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST 336 (430)
T ss_pred cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc-CCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence 488899999999999999999999999999999999998887553 456799999999999999999999999999999
Q ss_pred CcEEEEEccC
Q 022910 268 GKVVSSLVSH 277 (290)
Q Consensus 268 ~~~~~~~~~~ 277 (290)
++++..+.+.
T Consensus 337 ~R~l~~YtGA 346 (430)
T KOG0640|consen 337 GRMLKEYTGA 346 (430)
T ss_pred CceEEEEecC
Confidence 9999988764
No 53
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-31 Score=199.79 Aligned_cols=234 Identities=22% Similarity=0.340 Sum_probs=201.1
Q ss_pred CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC--CCcEE
Q 022910 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL--DGLVQ 132 (290)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~ 132 (290)
++.+.|+.-.+.|.++.|++ ++.++++++.|.+++|||..+++.+.++..+.-.+..++|......++.++. |.+|+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred ccccccccCCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 45566677788999999999 7778888999999999999999999999988889999999877777777766 88999
Q ss_pred EEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee------------------------
Q 022910 133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS------------------------ 188 (290)
Q Consensus 133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------------------ 188 (290)
..++.+.+.++.+.+|...|..++.+|-+..+++++.|++|++||++..++...+.
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCe
Confidence 99999999999999999999999999999999999999999999999644321111
Q ss_pred ---------------------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC
Q 022910 189 ---------------------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD 247 (290)
Q Consensus 189 ---------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 247 (290)
+.....+.|.|+|+|++|+.++..+.+++.|.-+|.....+..++....-.-..+|+|+
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD 243 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence 11345677889999999999888899999999889888888876544433467789999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcEEEEEcc-CCCcEEEEEEecC
Q 022910 248 STLALSGSKDGSVHMVNITTGKVVSSLVS-HTDSIECIGFSRS 289 (290)
Q Consensus 248 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~i~~s~d 289 (290)
++++++|+.||+|.+|++.+++.+..+.+ +.++++++.|+|.
T Consensus 244 s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR 286 (311)
T ss_pred CcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence 99999999999999999999999999998 6889999999984
No 54
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=230.97 Aligned_cols=210 Identities=24% Similarity=0.385 Sum_probs=194.5
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-----eee----eeccccCCEEEEEECCCCCEEEE
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-----WAS----EIQGHKDSVSSLAFSMDGQLLAS 124 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~----~~~~~~~~i~~~~~~~~~~~l~~ 124 (290)
..++....||++.|.+++++..+..+|++++.|+++++|++...+ .+. ....|...|+|++++|+.++||+
T Consensus 401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 445667789999999999998788899999999999999997622 111 23469999999999999999999
Q ss_pred EeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCC
Q 022910 125 GGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK 204 (290)
Q Consensus 125 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 204 (290)
||.|.+.+||+++......++.+|...+.++.|+|....+++++.|++|+||.+.+..+++++.+|...|..+.|-.++.
T Consensus 481 ~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~ 560 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGK 560 (775)
T ss_pred cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910 205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (290)
Q Consensus 205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 266 (290)
.|++++.||.|++|+++++.+..++.. |...|++++.+|...++++|+.||.|.+|.=-
T Consensus 561 qliS~~adGliKlWnikt~eC~~tlD~---H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 561 QLISAGADGLIKLWNIKTNECEMTLDA---HNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred EEEeccCCCcEEEEeccchhhhhhhhh---ccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 999999999999999999999999988 89999999999999999999999999999643
No 55
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=7.9e-32 Score=230.41 Aligned_cols=225 Identities=26% Similarity=0.483 Sum_probs=204.9
Q ss_pred CCCCceee-eccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCc
Q 022910 52 QPDDSTHI-FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (290)
Q Consensus 52 ~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 130 (290)
.+...+.. +.||.+.|.+++|.. ++.++++|+.|.++++||..++++...+.+|.+.|.++.. ...++++|+.|.+
T Consensus 236 ~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~t 312 (537)
T KOG0274|consen 236 NNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNT 312 (537)
T ss_pred ccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCce
Confidence 34555666 999999999999997 7889999999999999999999999999999999999988 4567888999999
Q ss_pred EEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe
Q 022910 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS 210 (290)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 210 (290)
|++|++.++..+..+.+|.++|+++..+ +.++++|+.|++|++|++.++++++.+.+|...|+++.+.+. ..+++|+
T Consensus 313 VkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs 389 (537)
T KOG0274|consen 313 VKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS 389 (537)
T ss_pred EEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee
Confidence 9999999999999999999999999997 889999999999999999999999999999999999988754 8999999
Q ss_pred CCCeEEEEcCCCC-eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc-CCCcEEEEEEe
Q 022910 211 DDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS-HTDSIECIGFS 287 (290)
Q Consensus 211 ~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~i~~s 287 (290)
.|+.|++||+++. +++.++.+ |...+..+.+ .+++|++++.|+.|++||..++++++.+.+ |.+.|+.+++.
T Consensus 390 ~D~~IkvWdl~~~~~c~~tl~~---h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 390 LDTTIKVWDLRTKRKCIHTLQG---HTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG 463 (537)
T ss_pred eccceEeecCCchhhhhhhhcC---Cccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC
Confidence 9999999999999 88888887 6676766555 578999999999999999999999999999 67889888774
No 56
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-32 Score=230.75 Aligned_cols=229 Identities=19% Similarity=0.316 Sum_probs=187.7
Q ss_pred eeec-cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC--------------------------------C-------
Q 022910 58 HIFS-GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--------------------------------G------- 97 (290)
Q Consensus 58 ~~~~-~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------------------------------~------- 97 (290)
+.+. .|.++|.++.|++ +|++||+|+.||.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eccccccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 3344 7999999999999 999999999999999998754 0
Q ss_pred ---------------------eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEE
Q 022910 98 ---------------------DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS 156 (290)
Q Consensus 98 ---------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~ 156 (290)
+++..+.+|.+.|..+.|+. +++|++++.|.+|++|++....++..|. |...|+|++
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence 12233468999999999995 4589999999999999999999999997 888899999
Q ss_pred EcC-CCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC--
Q 022910 157 WHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP-- 233 (290)
Q Consensus 157 ~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-- 233 (290)
|+| |.++|++|+-||.|+||++...+.+.-.. ...-|++++|.|+|++.++|+.+|.+++|+....+.........
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 999 78899999999999999998776554443 45889999999999999999999999999998877654443211
Q ss_pred ---CcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCC--cEEEEEEecCC
Q 022910 234 ---YHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD--SIECIGFSRSE 290 (290)
Q Consensus 234 ---~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~--~v~~i~~s~d~ 290 (290)
.....|+.+.|.| +...|++.+.|..|||||.+...++..|+++.+ .=...+|+.||
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dg 558 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDG 558 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCC
Confidence 1123799999998 444577788999999999999999999887543 33445676665
No 57
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-32 Score=217.27 Aligned_cols=226 Identities=28% Similarity=0.426 Sum_probs=196.8
Q ss_pred eeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCC-EEEEEeCCCcEEEEcCC
Q 022910 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPS 137 (290)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~ 137 (290)
.+.-.++.|+++.|.. +|.+||+|...|.|+|||+.+...+..+.+|+.+|..+.|+|+++ .|++|+.|+.+++||+.
T Consensus 63 ~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s 141 (487)
T KOG0310|consen 63 TFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS 141 (487)
T ss_pred hHHhhccceeEEEeec-CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence 3444677899999998 899999999999999999777677888999999999999999655 78888889999999999
Q ss_pred CCceEEEEecCCCCEEEEEEcCCC-CEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910 138 SGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (290)
Q Consensus 138 ~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 215 (290)
+......+.+|...|+|.+|+|.. ..+++|+.||.|++||++.. ..+..+. |..+|..+.+.|.|..+++++. ..|
T Consensus 142 ~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~v 219 (487)
T KOG0310|consen 142 TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSV 219 (487)
T ss_pred CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeE
Confidence 998777889999999999999964 48999999999999999987 5566665 8999999999999999998864 579
Q ss_pred EEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
+|||+-+|........ .|...|+|+++..++..|++|+-|+.|++||+.+.+.+..+.- .++|.+++.+|++
T Consensus 220 kVWDl~~G~qll~~~~--~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd 291 (487)
T KOG0310|consen 220 KVWDLTTGGQLLTSMF--NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDD 291 (487)
T ss_pred EEEEecCCceehhhhh--cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-ccceeeEEecCCC
Confidence 9999996654333322 2888999999999999999999999999999999999999875 6899999999974
No 58
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-31 Score=221.30 Aligned_cols=221 Identities=24% Similarity=0.420 Sum_probs=202.3
Q ss_pred CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc-ccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 022910 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL 141 (290)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 141 (290)
+...|+++.|++ ++.+||+|..+|.|.|||..+.+.+..+.+ |...|.+++|+ +..+.+|+.++.|..+|++..+.
T Consensus 216 ~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 216 GEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred CCCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence 488999999999 889999999999999999999999999998 99999999996 77899999999999999998876
Q ss_pred EEE-EecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC-CCCEEEEEe--CCCeEEE
Q 022910 142 KCT-LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGS--DDATLRV 217 (290)
Q Consensus 142 ~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~dg~i~i 217 (290)
... +.+|...|..+.|+++++++|+|+.|+.+.|||.....++..+..|...|.+++|+| ...+||+|+ .|+.|++
T Consensus 293 ~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 293 VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence 655 788999999999999999999999999999999988899999999999999999999 677888864 5999999
Q ss_pred EcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEE--eCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG--SKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 218 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
||..++..+..+. ..+.|++|.|++..+-|+++ ..++.|.||+..+.+++..+.+|...|..+++||||
T Consensus 373 wn~~~g~~i~~vd----tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg 443 (484)
T KOG0305|consen 373 WNTNTGARIDSVD----TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDG 443 (484)
T ss_pred EEcCCCcEecccc----cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCC
Confidence 9999999988887 57899999999987655553 457799999999999999999999999999999996
No 59
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.1e-31 Score=201.94 Aligned_cols=228 Identities=19% Similarity=0.337 Sum_probs=188.9
Q ss_pred cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-Ceee-eeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 022910 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWA-SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (290)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 139 (290)
.-.+.|.+|+|+|....++++|+.||+||+|+++. +..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 44678999999998778888999999999999987 3333 345579999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCEEEEEEcCCCC--EEEEeeCCCeEEEEECCcccEEEeeec----------------------------
Q 022910 140 NLKCTLEGPGGGVEWVSWHPRGH--IVLAGSEDSTVWMWNADRAAYLNMFSG---------------------------- 189 (290)
Q Consensus 140 ~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------------------- 189 (290)
+ +..+..|.++|..+.|-+... .|++|+.|.+|+.||+|...++.++..
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNL 183 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEc
Confidence 5 556677999999999988665 899999999999999998765443321
Q ss_pred -------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC--eeeEEEeCCCCc------ccCeEEEEEcCCC
Q 022910 190 -------------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG--ENIHVIRGHPYH------TEGLTCLTISADS 248 (290)
Q Consensus 190 -------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~------~~~v~~~~~~~~~ 248 (290)
.+-.++|++..++....+.|+-.|.+.|..+..+ +.-.+++.|... --.|++++|+|..
T Consensus 184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h 263 (347)
T KOG0647|consen 184 ENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH 263 (347)
T ss_pred CCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc
Confidence 1235788888888877888999999888877765 334455554311 2358899999998
Q ss_pred CEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 249 TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 249 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
..|+|++.||++.+||-.....+.+.+.|..+|++.+|+.+|
T Consensus 264 gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G 305 (347)
T KOG0647|consen 264 GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNG 305 (347)
T ss_pred ceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCC
Confidence 999999999999999998888999999999999999999886
No 60
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.2e-31 Score=196.62 Aligned_cols=227 Identities=21% Similarity=0.335 Sum_probs=205.0
Q ss_pred eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcC
Q 022910 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (290)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 136 (290)
...+++|.+.|-.++|+|..+.+|++++.|.+|++||...+++...+....+. .-+.|+|+|.++++++.|..|.+.|.
T Consensus 57 ~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~ 135 (313)
T KOG1407|consen 57 ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDA 135 (313)
T ss_pred hhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEe
Confidence 34567999999999999999999999999999999999999999888754444 45789999999999999999999999
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 022910 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 216 (290)
++.+.....+. ...+.-+.|+-++.+++.....|.|.|......+++..+++|.....||.|+|+|++|++|+.|..+.
T Consensus 136 r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvS 214 (313)
T KOG1407|consen 136 RTYKIVNEEQF-KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVS 214 (313)
T ss_pred cccceeehhcc-cceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceee
Confidence 99888766653 34578889997788888777789999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910 217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d 289 (290)
+||+...-+.+.+.. +.-+|..+.|+.+|++||+|+.|..|-|=++.+|..+..++ +.++-..++|+|.
T Consensus 215 LWD~~ELiC~R~isR---ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk 283 (313)
T KOG1407|consen 215 LWDVDELICERCISR---LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPK 283 (313)
T ss_pred ccChhHhhhheeecc---ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCC
Confidence 999998888888877 78899999999999999999999999999999999999998 4889999999995
No 61
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-30 Score=210.38 Aligned_cols=231 Identities=26% Similarity=0.387 Sum_probs=206.8
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 132 (290)
.+..+-.+.||...|++++|-|..+..++||+.|++|.+|.-..-+...++..|..-|.|+.|+|+|.++++++.||++.
T Consensus 136 SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 136 SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY 215 (603)
T ss_pred CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence 46677888999999999999998899999999999999999888888888999999999999999999999999999999
Q ss_pred EEcCCCCceEEEEe---cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCC---CeEEEEEcCCCCEE
Q 022910 133 IWDPSSGNLKCTLE---GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS---SVTCGDFTPDGKTI 206 (290)
Q Consensus 133 i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l 206 (290)
+||-.+++.+..+. +|.+.|.+++|+|++..|++++.|.+++|||+.+.++++++..... ....+.|. ...|
T Consensus 216 iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~l 293 (603)
T KOG0318|consen 216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHL 293 (603)
T ss_pred EEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeE
Confidence 99999999999998 7999999999999999999999999999999999999888864322 33344464 6689
Q ss_pred EEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE-ccCCCcEEEEE
Q 022910 207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL-VSHTDSIECIG 285 (290)
Q Consensus 207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~v~~i~ 285 (290)
++.+.+|.|.+++......+..+.+ |...|+++..+|++.+|++|+.||.|.-|+..++..-+.. +.|.+.|.+++
T Consensus 294 ItVSl~G~in~ln~~d~~~~~~i~G---HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~ 370 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDPSVLKVISG---HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMA 370 (603)
T ss_pred EEEEcCcEEEEecccCCChhheecc---cccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEe
Confidence 9999999999999999998888888 8999999999999999999999999999999988765544 56888888877
Q ss_pred Eec
Q 022910 286 FSR 288 (290)
Q Consensus 286 ~s~ 288 (290)
-+.
T Consensus 371 ~~~ 373 (603)
T KOG0318|consen 371 ASE 373 (603)
T ss_pred ecC
Confidence 654
No 62
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=2.8e-31 Score=210.20 Aligned_cols=233 Identities=21% Similarity=0.334 Sum_probs=207.7
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 132 (290)
..+.+..|+||+..|+.+.|+| ....+++++.|..|+||.............|..+|+.+..+|.|.||++++.||+..
T Consensus 250 s~q~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~ 328 (506)
T KOG0289|consen 250 SNQILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWA 328 (506)
T ss_pred hhhhhhhccCcceEEEEEEecc-chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEE
Confidence 4667889999999999999999 778889999999999999988877778888999999999999999999999999999
Q ss_pred EEcCCCCceEEEEecC--CCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe
Q 022910 133 IWDPSSGNLKCTLEGP--GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS 210 (290)
Q Consensus 133 i~d~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 210 (290)
+.|++++..+...... .-.+++.+|||||.+|.+|..||.|+|||+..+..+..|.+|.++|..++|+.+|-+|++++
T Consensus 329 Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a 408 (506)
T KOG0289|consen 329 FSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA 408 (506)
T ss_pred EEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe
Confidence 9999999988776642 23589999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCcEEEEEccCCCcEEEEEEec
Q 022910 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI--TTGKVVSSLVSHTDSIECIGFSR 288 (290)
Q Consensus 211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~--~~~~~~~~~~~~~~~v~~i~~s~ 288 (290)
.|+.|++||+|..+...++.... ...+.++.|.+.|.+|+.++.+=+|++++- ++...+..+..|.+..+++.|..
T Consensus 409 dd~~V~lwDLRKl~n~kt~~l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~ 486 (506)
T KOG0289|consen 409 DDGSVKLWDLRKLKNFKTIQLDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGE 486 (506)
T ss_pred cCCeEEEEEehhhcccceeeccc--cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecc
Confidence 99999999999988888777542 347999999999999999987766666663 25678888888888888888854
No 63
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-32 Score=201.92 Aligned_cols=213 Identities=26% Similarity=0.397 Sum_probs=189.1
Q ss_pred CCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC-CCCEEEEEeCC
Q 022910 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM-DGQLLASGGLD 128 (290)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 128 (290)
..++..|++.++.|...|.++.|++..+..+++++.|++|++|+...++.+.++.+|...|...+|+| ..+.++++|.|
T Consensus 90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCC
Confidence 45678899999999999999999998888999999999999999999999999999999999999999 46799999999
Q ss_pred CcEEEEcCCCCceEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcC-CCCE
Q 022910 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKT 205 (290)
Q Consensus 129 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~ 205 (290)
+++++||++.......+..|...|.++.|+. +.+.++||+.|+.|+.||++.. .++..+.+|.-.|+.++||| ...+
T Consensus 170 ~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 170 GTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred ceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhH
Confidence 9999999987655556888999999999987 5678999999999999999985 46788899999999999999 4578
Q ss_pred EEEEeCCCeEEEEcCCCCee-eEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 022910 206 ICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNI 265 (290)
Q Consensus 206 l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~ 265 (290)
|++++.|=+++|||...+.. +.+... |..-+..+.|++ ++.++|+++.|+.++||+.
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~---HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDH---HTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhc---cceEEeccccccccCceeeecccccceeeecc
Confidence 89999999999999985543 333333 788899999998 7889999999999999984
No 64
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.6e-32 Score=202.01 Aligned_cols=232 Identities=23% Similarity=0.421 Sum_probs=211.6
Q ss_pred CCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCc
Q 022910 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (290)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 130 (290)
-..+.=+-+|.||++.|.+..++. +....|+++.|-+-++||.-++..+..+. |..-|..++|+.+.++|++|+.+..
T Consensus 46 g~tgdwigtfeghkgavw~~~l~~-na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekl 123 (334)
T KOG0278|consen 46 GDTGDWIGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKL 123 (334)
T ss_pred CCCCCcEEeeeccCcceeeeecCc-hhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHH
Confidence 345667899999999999999988 77788999999999999999999999988 9999999999999999999999999
Q ss_pred EEEEcCCCCc-eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE
Q 022910 131 VQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (290)
Q Consensus 131 i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 209 (290)
++|||++..+ +...+.+|.+.|..+.|....+.|++++.+++|++||.++++.++++. .+.+|+++.++++|++|.++
T Consensus 124 lrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia 202 (334)
T KOG0278|consen 124 LRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA 202 (334)
T ss_pred hhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe
Confidence 9999998764 567788999999999999988999999999999999999999999887 67899999999999987776
Q ss_pred eCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE-ccCCCcEEEEEEec
Q 022910 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL-VSHTDSIECIGFSR 288 (290)
Q Consensus 210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~v~~i~~s~ 288 (290)
. .+.|.+||..+..+++.+. ....|.+..++|+..++++|+.|+.++.||..++..+..+ ++|-++|-|+.|+|
T Consensus 203 ~-gssV~Fwdaksf~~lKs~k----~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP 277 (334)
T KOG0278|consen 203 Y-GSSVKFWDAKSFGLLKSYK----MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP 277 (334)
T ss_pred c-CceeEEeccccccceeecc----CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC
Confidence 4 5679999999998888777 5678999999999999999999999999999999999986 89999999999999
Q ss_pred CC
Q 022910 289 SE 290 (290)
Q Consensus 289 d~ 290 (290)
||
T Consensus 278 dG 279 (334)
T KOG0278|consen 278 DG 279 (334)
T ss_pred CC
Confidence 97
No 65
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-30 Score=194.97 Aligned_cols=232 Identities=19% Similarity=0.342 Sum_probs=199.3
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC-----
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL----- 127 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----- 127 (290)
.++.+-++.||++.|+|+.... +...+++|+.|.++++||+.+|+.+..++ ...+|..+.|+++|++++.+..
T Consensus 41 nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~ 118 (327)
T KOG0643|consen 41 NGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGY 118 (327)
T ss_pred CCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCc
Confidence 5778899999999999999998 77889999999999999999999999988 6778999999999998777643
Q ss_pred CCcEEEEcCC-------CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc-EEEeeecCCCCeEEEEE
Q 022910 128 DGLVQIWDPS-------SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDF 199 (290)
Q Consensus 128 dg~i~i~d~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~ 199 (290)
.+.|.+++++ ..++...+..+...++.+.|.|-+..|++|..+|.|.+||+++++ .+.....|...|+.|++
T Consensus 119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~ 198 (327)
T KOG0643|consen 119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQF 198 (327)
T ss_pred ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccc
Confidence 5789999987 456677888888999999999999999999999999999999974 55666779999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCc--EEEEEcCCC---------
Q 022910 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS--VHMVNITTG--------- 268 (290)
Q Consensus 200 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~~wd~~~~--------- 268 (290)
+|+..++++++.|.+-++||.++...++++. ...+|++.+++|-...++.|+.... |.-=..+.|
T Consensus 199 s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~----te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~ 274 (327)
T KOG0643|consen 199 SRDRTYFITGSKDTTAKLVDVRTLEVLKTYT----TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHL 274 (327)
T ss_pred cCCcceEEecccCccceeeeccceeeEEEee----ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHH
Confidence 9999999999999999999999999999888 5789999999996666666654322 222222223
Q ss_pred ---cEEEEEccCCCcEEEEEEecCC
Q 022910 269 ---KVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 269 ---~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
+.+..+++|-++|++++|||+|
T Consensus 275 i~eEEigrvkGHFGPINsvAfhPdG 299 (327)
T KOG0643|consen 275 IFEEEIGRVKGHFGPINSVAFHPDG 299 (327)
T ss_pred HHHHHhccccccccCcceeEECCCC
Confidence 4677889999999999999997
No 66
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.6e-32 Score=219.81 Aligned_cols=207 Identities=20% Similarity=0.384 Sum_probs=183.5
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCC-CEEEEEeCCCcE
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLV 131 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i 131 (290)
...++++|.||..+|.+++|++ .+..|++++.|+.|++||+++|+++..+. -...++|+.|.|++ +.|++|+.|+.|
T Consensus 247 ~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki 324 (503)
T KOG0282|consen 247 DRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKI 324 (503)
T ss_pred Ccceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcE
Confidence 4778999999999999999999 77778899999999999999999999987 45678999999998 789999999999
Q ss_pred EEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEE--------------------------
Q 022910 132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN-------------------------- 185 (290)
Q Consensus 132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-------------------------- 185 (290)
+.||+++++.++.+..|-++|..+.|-++++.+++++.++.++||+.+..-+++
T Consensus 325 ~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 325 RQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred EEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence 999999999999999999999999999999999999999999999987542211
Q ss_pred --------------------eeecC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEE
Q 022910 186 --------------------MFSGH--GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT 243 (290)
Q Consensus 186 --------------------~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 243 (290)
.+.+| .+.-..+.|||+|.+|++|..+|.+.+||.++.+.+..++. |..++..+.
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka---h~~~ci~v~ 481 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA---HDQPCIGVD 481 (503)
T ss_pred cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc---CCcceEEEE
Confidence 11222 23446689999999999999999999999999998888887 789999999
Q ss_pred EcC-CCCEEEEEeCCCcEEEEE
Q 022910 244 ISA-DSTLALSGSKDGSVHMVN 264 (290)
Q Consensus 244 ~~~-~~~~l~~~~~dg~i~~wd 264 (290)
|+| ....+|+++.+|.|++|+
T Consensus 482 wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 482 WHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ecCCCcceeEecccCceeEecC
Confidence 999 557899999999999996
No 67
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=6.5e-31 Score=195.61 Aligned_cols=227 Identities=21% Similarity=0.349 Sum_probs=202.7
Q ss_pred eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee--eccccCCEEEEEECC-CCCEEEEEeCCCcEEEE
Q 022910 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--IQGHKDSVSSLAFSM-DGQLLASGGLDGLVQIW 134 (290)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~ 134 (290)
+.+++|...|.+++|+. ++..|++|+.|+++++|++...+.... ..+|.+.|-.++|+| +...|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 77889999999999999 888999999999999999988765543 468999999999987 45689999999999999
Q ss_pred cCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCe
Q 022910 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (290)
Q Consensus 135 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 214 (290)
|++.+++...+....+.| -+.|+|+|.++++++.|..|.+.|.++.+.+...+ ....+.-++|+.++.+|+.....|.
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCce
Confidence 999999999888666544 48899999999999999999999999988776665 4556778889888888888888899
Q ss_pred EEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
|.|......+++..++. |.....|+.|+|+|++||+|+.|-.+.+||+...-+++.+.-+.-+|+.|+||.||
T Consensus 171 v~ILsypsLkpv~si~A---H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg 243 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKA---HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDG 243 (313)
T ss_pred EEEEecccccccccccc---CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCc
Confidence 99999988888888887 78899999999999999999999999999999999999999999999999999886
No 68
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-30 Score=207.62 Aligned_cols=232 Identities=20% Similarity=0.366 Sum_probs=195.7
Q ss_pred ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC----------eeeeeeccccCCEEEEEECCCCC-EEEE
Q 022910 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----------DWASEIQGHKDSVSSLAFSMDGQ-LLAS 124 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~-~l~~ 124 (290)
.+...-.|.+.|+.+.+.|++..++|+++..+.|.|||..+. .+..++.+|...-++++|++... +|++
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence 344446799999999999999999999999999999998652 12236788998788999998654 8999
Q ss_pred EeCCCcEEEEcCCCCc-------eEEEEecCCCCEEEEEEcCC-CCEEEEeeCCCeEEEEECC--cccEEEeeecCCCCe
Q 022910 125 GGLDGLVQIWDPSSGN-------LKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNAD--RAAYLNMFSGHGSSV 194 (290)
Q Consensus 125 ~~~dg~i~i~d~~~~~-------~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i 194 (290)
++.|+.|++||+.... +...+.+|...|..++|++. ..+|++++.|+.+.|||+| +.++.....+|.+.|
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence 9999999999997542 34677889999999999995 4588899999999999999 566777888999999
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEcCCCCee-eEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC---
Q 022910 195 TCGDFTP-DGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTG--- 268 (290)
Q Consensus 195 ~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~--- 268 (290)
.|++|+| ++..||+|+.|++|++||+|+.+. +..+.+ |...|.++.|+| ....||+++.|+++.+||+..-
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~---H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG---HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC---CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 9999999 667788999999999999998654 445554 899999999999 5578999999999999998642
Q ss_pred -----------cEEEEEccCCCcEEEEEEecCC
Q 022910 269 -----------KVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 269 -----------~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
+++....||...|..+.|+|.+
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~e 385 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE 385 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCC
Confidence 3456777999999999999974
No 69
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1e-29 Score=217.04 Aligned_cols=223 Identities=17% Similarity=0.260 Sum_probs=174.5
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeee-------------eeeccccCCEEEEEECC-CCCEEEEEeCCC
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-------------SEIQGHKDSVSSLAFSM-DGQLLASGGLDG 129 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-------------~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg 129 (290)
-..|.....++ ++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++++.|+
T Consensus 20 ~~~i~~~~~~~-d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 20 FLNVTPSTALW-DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred eeccccccccC-CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 34555555566 4334456666666666765433222 13668999999999999 788999999999
Q ss_pred cEEEEcCCCC-------ceEEEEecCCCCEEEEEEcCCC-CEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC
Q 022910 130 LVQIWDPSSG-------NLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP 201 (290)
Q Consensus 130 ~i~i~d~~~~-------~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 201 (290)
+|++|++.++ .++..+.+|...|.+++|+|.+ ++|++++.|+.|++||+++++.+..+..|...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 9999999765 3567788999999999999975 6999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCccc-CeEEEEEcCCCCEEEEEe----CCCcEEEEEcCCCc-EEEEEc
Q 022910 202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE-GLTCLTISADSTLALSGS----KDGSVHMVNITTGK-VVSSLV 275 (290)
Q Consensus 202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~----~dg~i~~wd~~~~~-~~~~~~ 275 (290)
++.+|++++.|+.|++||+++++.+..+.. |.. .+..+.|.+++..|++++ .|+.|++||+++.. ++....
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~---H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~ 255 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEA---HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD 255 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEec---CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec
Confidence 999999999999999999999998887776 433 345678898877777654 47899999998754 444444
Q ss_pred cC-CCcEEEEEEecCC
Q 022910 276 SH-TDSIECIGFSRSE 290 (290)
Q Consensus 276 ~~-~~~v~~i~~s~d~ 290 (290)
.+ ...+....|++++
T Consensus 256 ~d~~~~~~~~~~d~d~ 271 (493)
T PTZ00421 256 LDQSSALFIPFFDEDT 271 (493)
T ss_pred cCCCCceEEEEEcCCC
Confidence 33 2355556677664
No 70
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-30 Score=195.76 Aligned_cols=229 Identities=21% Similarity=0.355 Sum_probs=188.7
Q ss_pred CCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCC--EEEEEeC
Q 022910 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ--LLASGGL 127 (290)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~ 127 (290)
......++..+..|.++|+++|.+ +.++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.+... +|++|+.
T Consensus 29 ~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 29 VKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred cceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecC
Confidence 344567789999999999999985 47999999999999999999998998989999999999998765 8999999
Q ss_pred CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec------------------
Q 022910 128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG------------------ 189 (290)
Q Consensus 128 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------------ 189 (290)
||.|.+|+...-.++..+++|.+.|+.++.+|.+++.++.+.|+.+++|++-+++.-..+.-
T Consensus 106 DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV 185 (362)
T ss_pred CCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999977653222210
Q ss_pred ---------------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEE--cC
Q 022910 190 ---------------------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI--SA 246 (290)
Q Consensus 190 ---------------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~--~~ 246 (290)
....+.++.|. ++..|++|..++.|.+||.....+...+.. |...|..+.+ .|
T Consensus 186 ~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A---H~~RVK~i~~~~~~ 261 (362)
T KOG0294|consen 186 SGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA---HENRVKDIASYTNP 261 (362)
T ss_pred EeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeec---chhheeeeEEEecC
Confidence 01123344443 455688888999999999988887777777 7888888874 46
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC-----cEEEEEccCCCcEEEEEE
Q 022910 247 DSTLALSGSKDGSVHMVNITTG-----KVVSSLVSHTDSIECIGF 286 (290)
Q Consensus 247 ~~~~l~~~~~dg~i~~wd~~~~-----~~~~~~~~~~~~v~~i~~ 286 (290)
++.+|+++++||.|++||+... +++..+.. +..++|+..
T Consensus 262 ~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 262 EHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred CceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 7889999999999999999765 45555554 456666654
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.98 E-value=4.9e-31 Score=207.52 Aligned_cols=232 Identities=23% Similarity=0.350 Sum_probs=201.5
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (290)
.....+|.|..++|+++.|.+ .++.+++++.|+.+++|++...+...++.+|+..|+++.|......+++|+.|.+|++
T Consensus 209 ~~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~ 287 (459)
T KOG0288|consen 209 SELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKL 287 (459)
T ss_pred hhhhhhhhccCCCcceeeecC-CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhh
Confidence 446778888899999999999 6667778889999999999999999999999999999999877767999999999999
Q ss_pred EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 022910 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (290)
Q Consensus 134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 213 (290)
||+....+..++- ....+..|..+ ...+++|-.|+.|++||+++..+......++ .|+++..++++..|++++.|.
T Consensus 288 WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDd 363 (459)
T KOG0288|consen 288 WDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDD 363 (459)
T ss_pred hhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCC
Confidence 9999987776654 33446666665 5578889999999999999999999888665 999999999999999999999
Q ss_pred eEEEEcCCCCeeeEEEeCCCC-cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCC--cEEEEEEecCC
Q 022910 214 TLRVWNPKSGENIHVIRGHPY-HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD--SIECIGFSRSE 290 (290)
Q Consensus 214 ~i~i~d~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~--~v~~i~~s~d~ 290 (290)
++.+.|+++.....++..... ..+.++.+.|||++.|+++|+.||.|+||++.++++...+..... .|++++|+|.|
T Consensus 364 tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG 443 (459)
T KOG0288|consen 364 TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG 443 (459)
T ss_pred ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC
Confidence 999999999988777764332 334589999999999999999999999999999999999886554 59999999976
No 72
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=2.6e-30 Score=217.04 Aligned_cols=230 Identities=22% Similarity=0.337 Sum_probs=207.4
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (290)
.++++++.. +-+.|..|.| +.+++++|...|.+.+||+.....+.+++.|.+.|+.++.+|++..+++||.|.+|++
T Consensus 404 ~kciRTi~~--~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkf 480 (888)
T KOG0306|consen 404 LKCIRTITC--GYILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKF 480 (888)
T ss_pred cceeEEecc--ccEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEE
Confidence 444555543 3788999999 8899999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCC-----CceE--------EEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEc
Q 022910 134 WDPSS-----GNLK--------CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200 (290)
Q Consensus 134 ~d~~~-----~~~~--------~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 200 (290)
|+..- +... .++. -...|.|+.+||++++|+++--|.++++|-+.+.+....+.+|.-||.||..+
T Consensus 481 Wdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS 559 (888)
T KOG0306|consen 481 WDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDIS 559 (888)
T ss_pred EeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEecc
Confidence 99631 1111 1222 23469999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCc
Q 022910 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDS 280 (290)
Q Consensus 201 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 280 (290)
|+++.++||+.|..|+||-+.=|.+-+.+.. |...|.++.|.|...++++++.|+.|+.||-...+.++++.+|...
T Consensus 560 ~DSklivTgSADKnVKiWGLdFGDCHKS~fA---HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e 636 (888)
T KOG0306|consen 560 PDSKLIVTGSADKNVKIWGLDFGDCHKSFFA---HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE 636 (888)
T ss_pred CCcCeEEeccCCCceEEeccccchhhhhhhc---ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchhe
Confidence 9999999999999999999999998888776 8899999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCC
Q 022910 281 IECIGFSRSE 290 (290)
Q Consensus 281 v~~i~~s~d~ 290 (290)
|++++.+|+|
T Consensus 637 v~cLav~~~G 646 (888)
T KOG0306|consen 637 VWCLAVSPNG 646 (888)
T ss_pred eeeeEEcCCC
Confidence 9999999986
No 73
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.6e-30 Score=206.33 Aligned_cols=221 Identities=22% Similarity=0.353 Sum_probs=195.2
Q ss_pred CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC-----
Q 022910 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS----- 137 (290)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~----- 137 (290)
-.++|.|++-+| .+.+|+.|+-.|.|++|.+.+|.++..+.+|-..|+|+.|+-|+.+|++|+.||.|.+|.+.
T Consensus 80 ~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 80 LPGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred cccceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence 467899999999 88888888899999999999999999999999999999999999999999999999999863
Q ss_pred ----CCceEEEEecCCCCEEEEEEcCC--CCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC
Q 022910 138 ----SGNLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (290)
Q Consensus 138 ----~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 211 (290)
+-++++.+..|.-+|+.+...+. ..++++++.|.++++||+..+..+.++. ....+.++++.|.++.+++|+.
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~ 237 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTE 237 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCC
Confidence 34678889999999999998764 4599999999999999999999888876 6788999999999999999999
Q ss_pred CCeEEEEcCCCCe----------------eeEEEeCCCCccc--CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 022910 212 DATLRVWNPKSGE----------------NIHVIRGHPYHTE--GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS 273 (290)
Q Consensus 212 dg~i~i~d~~~~~----------------~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 273 (290)
+|.|.+.++.... .+..+.+ |.. .|+|++.+-||.+|++|+.||.|+|||+.+.+++++
T Consensus 238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G---h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG---HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred cceEEeeehhcCCcccccccccccccccceeeeecc---ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence 9999998775432 2233334 444 999999999999999999999999999999999999
Q ss_pred EccCCCcEEEEEEec
Q 022910 274 LVSHTDSIECIGFSR 288 (290)
Q Consensus 274 ~~~~~~~v~~i~~s~ 288 (290)
+....++|+.+.+.|
T Consensus 315 l~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 315 LQTSKGPVTNLQINP 329 (476)
T ss_pred HhhhccccceeEeec
Confidence 986688999888843
No 74
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-30 Score=219.79 Aligned_cols=213 Identities=19% Similarity=0.336 Sum_probs=182.1
Q ss_pred CCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC-CCCEEEEEeCC
Q 022910 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM-DGQLLASGGLD 128 (290)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 128 (290)
.....+|++.|.||.+.|..|+|+. + ++|++++.|.+||||++....+++.|. |..-|+|++|+| |.+||++|+-|
T Consensus 355 f~f~ekP~~ef~GHt~DILDlSWSK-n-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD 431 (712)
T KOG0283|consen 355 FVFSEKPFCEFKGHTADILDLSWSK-N-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLD 431 (712)
T ss_pred ccccccchhhhhccchhheeccccc-C-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccc
Confidence 3346789999999999999999996 4 577799999999999999999999998 999999999999 67899999999
Q ss_pred CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec--------CCCCeEEEEEc
Q 022910 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--------HGSSVTCGDFT 200 (290)
Q Consensus 129 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~i~~~~~~ 200 (290)
|.|+||++...+.+.-...+ .-|++++|.|+|+..++|+.+|.+++|++...+....+.. ....|+++.|.
T Consensus 432 ~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~ 510 (712)
T KOG0283|consen 432 GKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFF 510 (712)
T ss_pred cceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEec
Confidence 99999999987766554444 5699999999999999999999999999988776554321 12379999999
Q ss_pred C-CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910 201 P-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 201 ~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 267 (290)
| +...+++.+.|..|||||.+...++..+++.....+ -....|+.+|++|++++.|..|++|+...
T Consensus 511 p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S-Q~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 511 PGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS-QISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc-ceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 8 445688888999999999999899999988764433 34568889999999999999999999743
No 75
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.6e-31 Score=217.40 Aligned_cols=225 Identities=21% Similarity=0.455 Sum_probs=198.1
Q ss_pred cCCcCEE---EEEECCCCCcEEEEecCCCcEEEEEccCCe------eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910 62 GHSDEVY---SVACSPTDATLVATGGGDDKGFFWRINQGD------WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (290)
Q Consensus 62 ~h~~~v~---~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 132 (290)
.|...|. .+..++.++++|+||+.||.|++|++.... ...+++.|...|..+....+++.|+++|.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3444555 566666678889999999999999987532 3667888999999999999999999999999999
Q ss_pred EEcCCCC--ceEEEEecCCCCEEEEEE-cCCCCEEEEeeCCCeEEEEECCccc--EE--------Eeee-cCCCCeEEEE
Q 022910 133 IWDPSSG--NLKCTLEGPGGGVEWVSW-HPRGHIVLAGSEDSTVWMWNADRAA--YL--------NMFS-GHGSSVTCGD 198 (290)
Q Consensus 133 i~d~~~~--~~~~~~~~~~~~i~~i~~-~~~~~~l~~~~~dg~i~i~d~~~~~--~~--------~~~~-~~~~~i~~~~ 198 (290)
+|+...+ -+..++..|...|.|+++ .++..++|+|+-|+.|.+||+.++. .+ ..+. ++..+|++++
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 9999887 566788889999999999 7788899999999999999999772 22 2222 6788999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC
Q 022910 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278 (290)
Q Consensus 199 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 278 (290)
..+.|..|++|+..+.|++||.++++.+..+++ |...|..+..++||..++++++||+|++||+...+++.++..|.
T Consensus 179 ~N~t~t~ivsGgtek~lr~wDprt~~kimkLrG---HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~ 255 (735)
T KOG0308|consen 179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG---HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK 255 (735)
T ss_pred cCCcceEEEecCcccceEEeccccccceeeeec---cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEecc
Confidence 999999999999999999999999999999987 89999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEecC
Q 022910 279 DSIECIGFSRS 289 (290)
Q Consensus 279 ~~v~~i~~s~d 289 (290)
..|+++.-+|+
T Consensus 256 e~VWaL~~~~s 266 (735)
T KOG0308|consen 256 EGVWALQSSPS 266 (735)
T ss_pred CceEEEeeCCC
Confidence 99999988764
No 76
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=7.6e-30 Score=202.07 Aligned_cols=222 Identities=21% Similarity=0.387 Sum_probs=202.2
Q ss_pred cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEE
Q 022910 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144 (290)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 144 (290)
..|.++...| ....+++|+.|..+.++|...++.+..+++|...|+.+.|+|+...+++++.|..|+||..........
T Consensus 220 pgi~ald~~~-s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIP-SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecC-CCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 4688888888 467888999999999999999999999999999999999999999999999999999999988888888
Q ss_pred EecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCC
Q 022910 145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--GSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (290)
Q Consensus 145 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 222 (290)
...|..+|+.+..+|.|.||++++.||+..+.|++++..+...... .-.+++.+|+|+|.+|.+|..||.|+|||+.+
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 8899999999999999999999999999999999999888776642 34589999999999999999999999999999
Q ss_pred CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC-CcEEEEEEecCC
Q 022910 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT-DSIECIGFSRSE 290 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~i~~s~d~ 290 (290)
+.....|.+ |.++|..++|+.+|-+|++++.|+.|++||++.-+.+.++.... .+|.++.|.+.|
T Consensus 379 ~~~~a~Fpg---ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SG 444 (506)
T KOG0289|consen 379 QTNVAKFPG---HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSG 444 (506)
T ss_pred ccccccCCC---CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCC
Confidence 987777777 89999999999999999999999999999999999888887543 378899888765
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.6e-30 Score=207.35 Aligned_cols=221 Identities=25% Similarity=0.425 Sum_probs=192.6
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 143 (290)
.++|.+++|+|..+.-+|+.+. -.+.||+..+....+.+......+.++.|..||++|++|...|.|+|||+.+...+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 4689999999988877776653 679999999888888888888999999999999999999999999999987767788
Q ss_pred EEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEcCC
Q 022910 144 TLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPK 221 (290)
Q Consensus 144 ~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~ 221 (290)
.+.+|..++..+.|+|+++ .|++|+.|+.+++||+.+......+.+|...|+|.+|+|. +..+++|+.||.|++||++
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 8999999999999999655 7778888999999999999877789999999999999995 4588999999999999999
Q ss_pred CC-eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-cEEEEEccCCCcEEEEEEecCC
Q 022910 222 SG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 222 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
+. ..+..+. |..+|..+.+-|.|..+++++. ..|++||+.+| +.+..+..|...|+|+++..++
T Consensus 185 ~~~~~v~eln----hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 185 SLTSRVVELN----HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDS 250 (487)
T ss_pred cCCceeEEec----CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCC
Confidence 87 5555555 8999999999999999998875 48999999955 5556666699999999998754
No 78
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.1e-29 Score=221.11 Aligned_cols=234 Identities=22% Similarity=0.330 Sum_probs=203.6
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC------------------CeeeeeeccccCCEEEEE
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------------------GDWASEIQGHKDSVSSLA 114 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------------------~~~~~~~~~~~~~i~~~~ 114 (290)
-...+.+...|.+.|.|+.|+| ++.+||+|+.|+.|.||.... .+.+..+.+|...|..++
T Consensus 58 l~k~l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~ 136 (942)
T KOG0973|consen 58 LPKHLCTMDDHDGSVNCVRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVN 136 (942)
T ss_pred cchhheeeccccCceeEEEECC-CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceec
Confidence 4678899999999999999999 889999999999999999872 135667889999999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecC----
Q 022910 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH---- 190 (290)
Q Consensus 115 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---- 190 (290)
|+|++.+|++++.|++|.||+..+.+.+.++.+|.+.|..+.|.|-|++||+-+.|++|++|.+......+.+..+
T Consensus 137 Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~ 216 (942)
T KOG0973|consen 137 WSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES 216 (942)
T ss_pred cCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999998776666666543
Q ss_pred --CCCeEEEEEcCCCCEEEEEe----CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC-----CCC----------
Q 022910 191 --GSSVTCGDFTPDGKTICTGS----DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-----DST---------- 249 (290)
Q Consensus 191 --~~~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~---------- 249 (290)
...+..+.|+|+|.+|++.. .-..+.|.+..+.+.-..+-+ |..++.++.|+| ..+
T Consensus 217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG---H~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG---HSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec---CCCceEEEEeChHHhccccccCCccCCCcc
Confidence 34578899999999998753 234788998887777777777 788999999998 122
Q ss_pred --EEEEEeCCCcEEEEEcCCCcEEEEEc-cCCCcEEEEEEecCC
Q 022910 250 --LALSGSKDGSVHMVNITTGKVVSSLV-SHTDSIECIGFSRSE 290 (290)
Q Consensus 250 --~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~s~d~ 290 (290)
.+|+|+.|++|.||.....+++..+. -.+..|..++|+|||
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG 337 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDG 337 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCC
Confidence 68899999999999998888876654 346799999999997
No 79
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3e-28 Score=178.35 Aligned_cols=226 Identities=19% Similarity=0.361 Sum_probs=188.8
Q ss_pred cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC-----------e----eeeeeccccCCEEEEEECCCCCEEEEEe
Q 022910 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-----------D----WASEIQGHKDSVSSLAFSMDGQLLASGG 126 (290)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-----------~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 126 (290)
..+..|.+++|+| .+.+.++|+...+++|...... . ..++-+-|.+.|.|.+|+|.|.+|++|+
T Consensus 30 ~dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 30 EDSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred cchhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 4567899999999 7789999999999998865321 0 1122346889999999999999999999
Q ss_pred CCCcEEEEcCCCCce-----EEEEecCCCCEEEEEEcCC----CCEEEEeeC-CCeEEEEECCcccEEEeeecCCCCeEE
Q 022910 127 LDGLVQIWDPSSGNL-----KCTLEGPGGGVEWVSWHPR----GHIVLAGSE-DSTVWMWNADRAAYLNMFSGHGSSVTC 196 (290)
Q Consensus 127 ~dg~i~i~d~~~~~~-----~~~~~~~~~~i~~i~~~~~----~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i~~ 196 (290)
.|.+|++.-.+.... -..+.-|.+.|+.++|-.+ +.+|++++. |..|++-|..+++.+..+.+|.+.|.+
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghila 188 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILA 188 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEE
Confidence 999999987654322 3467779999999999643 457777654 678899999999999999999999987
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC----CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 022910 197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP----YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS 272 (290)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 272 (290)
+ ++-++-.+++|+.|.+|++||++-..++.++.... ...+.|.+++..|.|++|++|-.|....+||++.++.++
T Consensus 189 l-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 189 L-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred E-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee
Confidence 6 45578899999999999999999888887765332 134679999999999999999999999999999999999
Q ss_pred EEccCCCcEEEEEEecC
Q 022910 273 SLVSHTDSIECIGFSRS 289 (290)
Q Consensus 273 ~~~~~~~~v~~i~~s~d 289 (290)
++..|...|+++.|||.
T Consensus 268 ~f~phsadir~vrfsp~ 284 (350)
T KOG0641|consen 268 RFHPHSADIRCVRFSPG 284 (350)
T ss_pred eeCCCccceeEEEeCCC
Confidence 99999999999999995
No 80
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=7.8e-32 Score=225.26 Aligned_cols=230 Identities=26% Similarity=0.488 Sum_probs=216.1
Q ss_pred eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcC
Q 022910 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (290)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 136 (290)
.+.+..|...|.|+..-. ....+++|+.+..+-+|.+.....+..+.+|..+|.++.|++...+|++|+.+|+|++||+
T Consensus 21 ~~~~~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred chhhhhhhhhhceeeeec-cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence 356678999999999854 7788999999999999999888888889999999999999999999999999999999999
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 022910 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 216 (290)
+..+.++++.+|...+..+.|+|-+.+++.|+.|+.+++||++..-+...+.+|...+..+.|+|+|++++.++.|..++
T Consensus 100 eeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 100 EEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred hhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
|||+..|+....|.. |...+..+.|+|..-++++|+.|++|++||+++...+.........|.+.+|+|+|
T Consensus 180 i~d~~agk~~~ef~~---~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 180 IWDLTAGKLSKEFKS---HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDG 250 (825)
T ss_pred eeccccccccccccc---ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCc
Confidence 999999998888887 78899999999999999999999999999999999999998888999999999986
No 81
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.5e-29 Score=201.61 Aligned_cols=226 Identities=28% Similarity=0.412 Sum_probs=199.8
Q ss_pred ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc
Q 022910 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN 140 (290)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 140 (290)
++|.+.|.+++.++ ++++||+|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....+++++.|+.|++|++....
T Consensus 199 ~~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 199 KGHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred ccccceeEEEEEcC-CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 48999999999999 89999999999999999999999999999999999999999888899999999999999999999
Q ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC
Q 022910 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (290)
Q Consensus 141 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 220 (290)
.+.++.+|...|..|....-.+.+-+|+.|+++++|++. ......+.++.+.+.|++|-. ...|++|+.+|.|.+|++
T Consensus 278 ~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHHHHhCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeee
Confidence 999999999999999988888888888899999999994 344556677888999999984 567999999999999999
Q ss_pred CCCeeeEEEeCCCC---------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----cEEEEEccCCCcEEEEEEe
Q 022910 221 KSGENIHVIRGHPY---------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTG----KVVSSLVSHTDSIECIGFS 287 (290)
Q Consensus 221 ~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----~~~~~~~~~~~~v~~i~~s 287 (290)
...+++.+....+. ++..|++++..|...++++|+.+|.|++|-+..+ .++..+. -.+-|++++|+
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~ 434 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFS 434 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEc
Confidence 98888776653321 2237899999999999999999999999999877 4666666 47899999999
Q ss_pred cCC
Q 022910 288 RSE 290 (290)
Q Consensus 288 ~d~ 290 (290)
++|
T Consensus 435 ~sg 437 (479)
T KOG0299|consen 435 NSG 437 (479)
T ss_pred cCC
Confidence 986
No 82
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=7.8e-30 Score=193.29 Aligned_cols=188 Identities=27% Similarity=0.443 Sum_probs=169.8
Q ss_pred eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC-CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEE
Q 022910 99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS-SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (290)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d 177 (290)
++..+.+|.+.|..+.|+|+|.+||+|+.|..|.+|++. .-+-...+++|.++|..+.|.++++.+++++.|.+++.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 344567899999999999999999999999999999954 3345667889999999999999999999999999999999
Q ss_pred CCcccEEEeeecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC
Q 022910 178 ADRAAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256 (290)
Q Consensus 178 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 256 (290)
.++++.++++++|..-+.++.-+.-|. ++.+++.||++++||+|+...++++. ..-.++++.|...+..+.+|+-
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~----~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE----NKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc----cceeEEEEEecccccceeeccc
Confidence 999999999999999999988555454 55678899999999999988887776 4678999999999999999999
Q ss_pred CCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 257 DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 257 dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
|+.|++||++....+..+.+|..+|+++..+|+|
T Consensus 195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g 228 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG 228 (338)
T ss_pred cCceeeeccccCcceEEeecccCceeeEEeccCC
Confidence 9999999999999999999999999999999986
No 83
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.9e-28 Score=177.21 Aligned_cols=229 Identities=23% Similarity=0.356 Sum_probs=192.4
Q ss_pred eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee-----eeeeccccCCEEEEEECCC----CCEEEEEe-
Q 022910 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLAFSMD----GQLLASGG- 126 (290)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~~~i~~~~~~~~----~~~l~~~~- 126 (290)
.+.-+.|++.|+|.+|+| .+.+|++|+.|.+|++..++.... -..+.-|.+.|..++|..+ +..|++++
T Consensus 82 ~kr~khhkgsiyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred eeeccccCccEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence 344467899999999999 889999999999999987765322 2346679999999999642 44677664
Q ss_pred CCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec-------CCCCeEEEEE
Q 022910 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-------HGSSVTCGDF 199 (290)
Q Consensus 127 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~i~~~~~ 199 (290)
.|..|++-|..+++..+.+.+|.+.|.++- +-++-.+++|+.|.+|++||++-..++..+.. ..+.|.+++.
T Consensus 161 gdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 161 GDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred CcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 478899999999999999999999888763 33688999999999999999999888877642 2367999999
Q ss_pred cCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----cEEEEEc
Q 022910 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG----KVVSSLV 275 (290)
Q Consensus 200 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----~~~~~~~ 275 (290)
.|.|++|++|-.|....+||++.++.++.+.. |...|.++.|+|...||++++.|..|++-|+... -++....
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq~f~p---hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ 316 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHP---HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA 316 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceeeeeCC---CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE
Confidence 99999999999999999999999999988876 8899999999999999999999999999998642 2344555
Q ss_pred cCCCcEEEEEEecCC
Q 022910 276 SHTDSIECIGFSRSE 290 (290)
Q Consensus 276 ~~~~~v~~i~~s~d~ 290 (290)
.|...+-.+.|+|.+
T Consensus 317 ehkdk~i~~rwh~~d 331 (350)
T KOG0641|consen 317 EHKDKAIQCRWHPQD 331 (350)
T ss_pred eccCceEEEEecCcc
Confidence 788888889999864
No 84
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=2.7e-28 Score=209.57 Aligned_cols=189 Identities=16% Similarity=0.265 Sum_probs=159.4
Q ss_pred ecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCC-CCEEEEEeCCCcEEEEcCCCCc--------eEEEEecCCCCEE
Q 022910 83 GGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGN--------LKCTLEGPGGGVE 153 (290)
Q Consensus 83 ~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~i~ 153 (290)
|+..+.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||+|+||++.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566789999998887788889999999999999996 7899999999999999997642 3446778999999
Q ss_pred EEEEcCCCCE-EEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCC
Q 022910 154 WVSWHPRGHI-VLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232 (290)
Q Consensus 154 ~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 232 (290)
+++|+|++.. |++++.|+.|++||+++++.+..+. +...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g- 207 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI- 207 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec-
Confidence 9999998875 5789999999999999998777775 567899999999999999999999999999999998888877
Q ss_pred CCcccCe-----EEEEEcCCCCEEEEEeCCC----cEEEEEcCC-CcEEEEEc
Q 022910 233 PYHTEGL-----TCLTISADSTLALSGSKDG----SVHMVNITT-GKVVSSLV 275 (290)
Q Consensus 233 ~~~~~~v-----~~~~~~~~~~~l~~~~~dg----~i~~wd~~~-~~~~~~~~ 275 (290)
|...+ ....|++++.+|++++.++ .|++||+++ ++++..+.
T Consensus 208 --H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ 258 (568)
T PTZ00420 208 --HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS 258 (568)
T ss_pred --ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE
Confidence 44433 2334568889999988774 799999995 56666544
No 85
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=3e-29 Score=218.51 Aligned_cols=228 Identities=29% Similarity=0.430 Sum_probs=199.1
Q ss_pred ccCCcCEEEEEECCCCCcEEEEec--CCCcEEEEEccC------------CeeeeeeccccCCEEEEEECCCCCEEEEEe
Q 022910 61 SGHSDEVYSVACSPTDATLVATGG--GDDKGFFWRINQ------------GDWASEIQGHKDSVSSLAFSMDGQLLASGG 126 (290)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 126 (290)
..+...|.++..+| ++..+|||+ .||.++||+... .+.+..+..|.+.|.|+.|+|||++||+|+
T Consensus 10 ~H~~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred ccCCeeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 34566799999999 889999999 899999998753 245566778999999999999999999999
Q ss_pred CCCcEEEEcCCC------------------CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee
Q 022910 127 LDGLVQIWDPSS------------------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS 188 (290)
Q Consensus 127 ~dg~i~i~d~~~------------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 188 (290)
.|+.|.||.... .+....+.+|.+.|..++|+|++.+|++++.|++|.+|+.++.+.+.++.
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 999999998762 13567788999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC---cccCeEEEEEcCCCCEEEEEeC----CCcEE
Q 022910 189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY---HTEGLTCLTISADSTLALSGSK----DGSVH 261 (290)
Q Consensus 189 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~----dg~i~ 261 (290)
+|.+.|..+.|.|-|+||++-+.|++|+||.+.+....+.+..+.. .......+.|+|||++|++... -.++.
T Consensus 169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 9999999999999999999999999999999877666666654332 2345788999999999998743 34799
Q ss_pred EEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910 262 MVNITTGKVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 262 ~wd~~~~~~~~~~~~~~~~v~~i~~s~d 289 (290)
|.+-.+.+.-..|.+|.+++.++.|+|.
T Consensus 249 IieR~tWk~~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred EEecCCceeeeeeecCCCceEEEEeChH
Confidence 9999899999999999999999999983
No 86
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.2e-29 Score=184.95 Aligned_cols=185 Identities=23% Similarity=0.445 Sum_probs=169.0
Q ss_pred eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEEC
Q 022910 99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178 (290)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~ 178 (290)
....+..++++|..+.|+-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.+.++..|++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC--eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC
Q 022910 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG--ENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256 (290)
Q Consensus 179 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 256 (290)
.+++.++++.+|...|..++|+.....+++|+-|..+++||.++. ++++.+.. ....|.++... +..+++|+.
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde---a~D~V~Si~v~--~heIvaGS~ 163 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE---AKDGVSSIDVA--EHEIVAGSV 163 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh---hcCceeEEEec--ccEEEeecc
Confidence 999999999999999999999999999999999999999999864 45555554 56778888875 668999999
Q ss_pred CCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 257 DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 257 dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
||+++.||++.|+......+ .+|++++|++||
T Consensus 164 DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~ 195 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDG 195 (307)
T ss_pred CCcEEEEEeecceeehhhcC--CcceeEEecCCC
Confidence 99999999999998887776 589999999986
No 87
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=8.7e-29 Score=188.32 Aligned_cols=220 Identities=20% Similarity=0.357 Sum_probs=180.8
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 143 (290)
...|.++.|+|. +..|++++.||++++|++........++ |..++.+++|.+ ...+++|+.||.|+.+|+.++...
T Consensus 13 ~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~- 88 (323)
T KOG1036|consen 13 EDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED- 88 (323)
T ss_pred hhceeeEEEcCc-CCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-
Confidence 678999999984 4455566799999999999887666666 999999999986 567999999999999999998765
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC
Q 022910 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223 (290)
Q Consensus 144 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 223 (290)
.+-.|..+|+||.+++....+++|+.|++|++||.+.......+.. ...|.++... ++.|++|+.+..|.+||+++.
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEcccc
Confidence 4455889999999999889999999999999999998655555543 3478887764 778999999999999999864
Q ss_pred eeeE---------------EE---------------------------------eCCCC------cccCeEEEEEcCCCC
Q 022910 224 ENIH---------------VI---------------------------------RGHPY------HTEGLTCLTISADST 249 (290)
Q Consensus 224 ~~~~---------------~~---------------------------------~~~~~------~~~~v~~~~~~~~~~ 249 (290)
.... .+ +.|.. .--+|++++|+|-..
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 3211 11 11100 123689999999988
Q ss_pred EEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 250 LALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 250 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
.|+||+.||.|.+||+.+.+.+..+......|.+++|+.+|
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG 286 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDG 286 (323)
T ss_pred eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCC
Confidence 99999999999999999999999998888899999999886
No 88
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.3e-29 Score=187.82 Aligned_cols=202 Identities=25% Similarity=0.415 Sum_probs=181.0
Q ss_pred CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 022910 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL 141 (290)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 141 (290)
|+--|.+++|+. +.++|++|+.+..+|||+++..+ +...+.+|.+.|..+.|+...+.|++.+.|++||+||.++++.
T Consensus 99 hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~ 177 (334)
T KOG0278|consen 99 HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE 177 (334)
T ss_pred hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence 777899999998 77888899999999999998754 4567889999999999999999999999999999999999999
Q ss_pred EEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCC
Q 022910 142 KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221 (290)
Q Consensus 142 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 221 (290)
++++.. ..+++++.++++|++|.++.. +.|.+||..+...++.+. ....|.+..++|+...+++|+.|..++.||..
T Consensus 178 v~sL~~-~s~VtSlEvs~dG~ilTia~g-ssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~ 254 (334)
T KOG0278|consen 178 VQSLEF-NSPVTSLEVSQDGRILTIAYG-SSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYN 254 (334)
T ss_pred EEEEec-CCCCcceeeccCCCEEEEecC-ceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEecc
Confidence 999874 456999999999988777654 789999999999888887 45678999999999999999999999999999
Q ss_pred CCeeeEEE-eCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 022910 222 SGENIHVI-RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271 (290)
Q Consensus 222 ~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 271 (290)
++..+..+ ++ |.++|.|+.|+|+|...++|+.||+|++|.+..++..
T Consensus 255 TgeEi~~~nkg---h~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 255 TGEEIGSYNKG---HFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCceeeecccC---CCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 99988775 44 8899999999999999999999999999998776643
No 89
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=3.6e-29 Score=195.15 Aligned_cols=203 Identities=23% Similarity=0.448 Sum_probs=178.0
Q ss_pred ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-------------------------CeeeeeeccccCCE
Q 022910 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-------------------------GDWASEIQGHKDSV 110 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-------------------------~~~~~~~~~~~~~i 110 (290)
.+..-+||...|-+++..+ ++..+++|+.|..|.||+..+ ..++..+.+|..+|
T Consensus 185 ~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~V 263 (423)
T KOG0313|consen 185 ALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPV 263 (423)
T ss_pred HHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccce
Confidence 3444459999999999999 888999999999999999321 22456678999999
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc---EEEee
Q 022910 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLNMF 187 (290)
Q Consensus 111 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~ 187 (290)
.++.|++ ...+++++.|.+|+.||+.++....++.+.. .+.++.++|..++|++|+.|..|++||.+++. ....+
T Consensus 264 s~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~ 341 (423)
T KOG0313|consen 264 SSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSL 341 (423)
T ss_pred eeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc-ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEee
Confidence 9999997 7789999999999999999999998888654 59999999999999999999999999999863 56788
Q ss_pred ecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910 188 SGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (290)
Q Consensus 188 ~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~ 265 (290)
.+|...|.++.|+| +...|++++.|+++++||+|+.+ ++..+.+ |...|-++.|. ++.++++|+.|.+|+++.-
T Consensus 342 ~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~---h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 342 IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG---HNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc---CCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 89999999999999 45667899999999999999988 7888877 78999999998 4679999999999999864
No 90
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3e-30 Score=217.28 Aligned_cols=219 Identities=21% Similarity=0.361 Sum_probs=188.6
Q ss_pred CEEEEEECCCCCcEEEEecCCCcEEEEEccC---CeeeeeeccccCCEEEEEECCC-CCEEEEEeCCCcEEEEcCCCCce
Q 022910 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQ---GDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGNL 141 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~ 141 (290)
.+..+.|+....++|||++..|.|.+||+.. .+.+..+..|...++++.|++- ..+|++||.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 4556888877889999999999999999987 5666788899999999999874 45899999999999999999999
Q ss_pred EEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEc
Q 022910 142 KCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (290)
Q Consensus 142 ~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 219 (290)
..++.+....|+.+.|+| .+.+|+++...|.+.+||+|.. ++...+.+|.++|.|+.|+|++.+||+|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 989988888999999999 5779999999999999999975 56788899999999999999999999999999999999
Q ss_pred CCCCee--eEEEeCCCCcccCeEEEEEcCCCC-EEEEEeC--CCcEEEEEcCCC-cEEEEEccCCCcEEEEEEec
Q 022910 220 PKSGEN--IHVIRGHPYHTEGLTCLTISADST-LALSGSK--DGSVHMVNITTG-KVVSSLVSHTDSIECIGFSR 288 (290)
Q Consensus 220 ~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~--dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~~s~ 288 (290)
+.+++. ..++. ...++.++.|-|..+ .|++++. |-.|+|||++.. -+..++..|...++.++|-.
T Consensus 249 ~t~~~~~~~~tIn----Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN----TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ccCCCccceeEEe----ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 976554 33444 467899999999665 4555544 678999999764 35678889999999999954
No 91
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.1e-28 Score=207.46 Aligned_cols=226 Identities=24% Similarity=0.363 Sum_probs=201.8
Q ss_pred eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcC
Q 022910 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (290)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 136 (290)
...+.||...|.+++++. +..++++|+ .+.+++|+..+.+++.++.. +-+.+..|.|.++++++|...|.+.+||+
T Consensus 366 ~i~~~GHR~dVRsl~vS~-d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 366 NIEIGGHRSDVRSLCVSS-DSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred eeeeccchhheeEEEeec-CceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEe
Confidence 356789999999999998 666776664 68999999999999999973 37899999999999999999999999999
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc-----cEEEee-------ecCCCCeEEEEEcCCCC
Q 022910 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-----AYLNMF-------SGHGSSVTCGDFTPDGK 204 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~-------~~~~~~i~~~~~~~~~~ 204 (290)
.+...+.++++|.+.|+.++.+|++..+++|+.|.+|++||+.-. ...+.+ -.....|.|+.+||+++
T Consensus 442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 442 ASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred ehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 999999999999999999999999999999999999999997421 111111 12456799999999999
Q ss_pred EEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEE
Q 022910 205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284 (290)
Q Consensus 205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i 284 (290)
+|+++--|.+|+||-+.+.+-...+.+ |.-+|.||..+||+++++||+.|.+|++|=+.-|.+-+++.+|...|.++
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYG---HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYG---HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSV 598 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecc---cccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEE
Confidence 999999999999999999888788887 88999999999999999999999999999999999999999999999999
Q ss_pred EEecC
Q 022910 285 GFSRS 289 (290)
Q Consensus 285 ~~s~d 289 (290)
.|-|.
T Consensus 599 ~F~P~ 603 (888)
T KOG0306|consen 599 QFLPK 603 (888)
T ss_pred EEccc
Confidence 99985
No 92
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.5e-28 Score=210.41 Aligned_cols=218 Identities=28% Similarity=0.534 Sum_probs=198.3
Q ss_pred eeecc-CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee-eccccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910 58 HIFSG-HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (290)
Q Consensus 58 ~~~~~-h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 135 (290)
..+.+ |...+.+..|.. ..+++++.+++|++|+..++..+.. +.+|.+.|.++++...+.++++|+.|.++++||
T Consensus 201 ~~~~~~~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred eeecccCcchhhhheeec---CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 34443 566788888874 4788999999999999999998888 999999999999987788999999999999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (290)
Q Consensus 136 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 215 (290)
+.++++...+.+|...+.++... ..++++|+.|.+|++|++.++..+..+.+|..+|.++.++ +.++++|+.|+.|
T Consensus 278 ~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 278 CSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV 353 (537)
T ss_pred cCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceE
Confidence 99999999999999999999874 5578889999999999999999999999999999999997 8899999999999
Q ss_pred EEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-cEEEEEccCCCcEEEEEE
Q 022910 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGF 286 (290)
Q Consensus 216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~~ 286 (290)
++||+.+++++..+.+ |...|.++.+.+. ..+++|+.|++|++||+.+. +++.++.+|..-|.++.+
T Consensus 354 ~VW~~~~~~cl~sl~g---H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~ 421 (537)
T KOG0274|consen 354 KVWDPRTGKCLKSLSG---HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL 421 (537)
T ss_pred EEEEhhhceeeeeecC---CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc
Confidence 9999999999999998 8899999988764 89999999999999999999 999999999988877655
No 93
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=6.7e-29 Score=197.67 Aligned_cols=213 Identities=22% Similarity=0.375 Sum_probs=180.5
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-------eeeeeccccCCEEEEEECCC-CCEEEEE
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-------WASEIQGHKDSVSSLAFSMD-GQLLASG 125 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~~i~~~~~~~~-~~~l~~~ 125 (290)
-.|-..|.||++.-++|+|++...-.|++|+.|++|++||+.... ....+.+|...|..++|++- ...|+++
T Consensus 167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv 246 (422)
T KOG0264|consen 167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV 246 (422)
T ss_pred CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee
Confidence 356668999999999999999888899999999999999997632 34567899999999999984 5589999
Q ss_pred eCCCcEEEEcCC--CCceEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcC
Q 022910 126 GLDGLVQIWDPS--SGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP 201 (290)
Q Consensus 126 ~~dg~i~i~d~~--~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~ 201 (290)
+.|+.+.|||++ +.++.....+|.+.+.|++|+| ++..||+|+.|++|++||+|+. +++..+.+|...|.++.|+|
T Consensus 247 ~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP 326 (422)
T KOG0264|consen 247 GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP 326 (422)
T ss_pred cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC
Confidence 999999999999 5677778889999999999999 5668999999999999999986 57788999999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEcCCCCe-----------eeEEEeCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcC
Q 022910 202 -DGKTICTGSDDATLRVWNPKSGE-----------NIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNIT 266 (290)
Q Consensus 202 -~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~ 266 (290)
....|++++.|+.+.|||+..-. +...+-.|.+|...|..+.|+|.. ..|++.+.|+.+.||...
T Consensus 327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 45778899999999999986422 122333445589999999999965 467778889999999974
No 94
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.3e-29 Score=195.19 Aligned_cols=209 Identities=24% Similarity=0.421 Sum_probs=170.7
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 132 (290)
.+..+++.||..+|..+.|+| +.++|++|+.+..+.+||+.++.....+. ++...+.+++|.|||..+++|+.|+.+.
T Consensus 259 ~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 259 FKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred eeeeeeeecccCceEEEEECC-CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence 556889999999999999999 66677788888899999999999887776 3457899999999999999999999999
Q ss_pred EEcCCCCc----------------------eEEE-------------------EecCCCCEEEEEEcCCCCEEEEeeCCC
Q 022910 133 IWDPSSGN----------------------LKCT-------------------LEGPGGGVEWVSWHPRGHIVLAGSEDS 171 (290)
Q Consensus 133 i~d~~~~~----------------------~~~~-------------------~~~~~~~i~~i~~~~~~~~l~~~~~dg 171 (290)
-|++.... .+.. +.....+|+++..+.+++++++--.+.
T Consensus 338 ~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~q 417 (519)
T KOG0293|consen 338 MWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQ 417 (519)
T ss_pred EecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccC
Confidence 99976321 1100 011234677778888888887777788
Q ss_pred eEEEEECCcccEEEeeecCCCC--eEEEEEcC-CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC-C
Q 022910 172 TVWMWNADRAAYLNMFSGHGSS--VTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-D 247 (290)
Q Consensus 172 ~i~i~d~~~~~~~~~~~~~~~~--i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 247 (290)
.|.+||++..+.++++.+|... +-.-+|-- +..++++|+.|+.|+||+..+++++..+.+ |...|++++|+| +
T Consensus 418 ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG---Hs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 418 EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG---HSKTVNCVSWNPAD 494 (519)
T ss_pred eeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC---CcceeeEEecCCCC
Confidence 8888888877788888887654 33334544 457899999999999999999999999998 889999999999 6
Q ss_pred CCEEEEEeCCCcEEEEEcC
Q 022910 248 STLALSGSKDGSVHMVNIT 266 (290)
Q Consensus 248 ~~~l~~~~~dg~i~~wd~~ 266 (290)
..++|+|+.||+|++|-..
T Consensus 495 p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 495 PEMFASASDDGTIRIWGPS 513 (519)
T ss_pred HHHhhccCCCCeEEEecCC
Confidence 7899999999999999865
No 95
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=9.5e-29 Score=188.53 Aligned_cols=236 Identities=19% Similarity=0.323 Sum_probs=197.3
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec--cccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLDGLV 131 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (290)
-..+++|-.|.++|+++.|+| ...+|++|+.|++|++||+.+....+.++ ....+|.++.|+|.|.+|++|..-.++
T Consensus 162 hPvIRTlYDH~devn~l~FHP-re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~ 240 (430)
T KOG0640|consen 162 HPVIRTLYDHVDEVNDLDFHP-RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTL 240 (430)
T ss_pred CceEeehhhccCcccceeecc-hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCce
Confidence 467899999999999999999 78899999999999999998754443333 245789999999999999999999999
Q ss_pred EEEcCCCCceEEEEe---cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec-C-CCCeEEEEEcCCCCEE
Q 022910 132 QIWDPSSGNLKCTLE---GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-H-GSSVTCGDFTPDGKTI 206 (290)
Q Consensus 132 ~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~l 206 (290)
++||+++.++..... .|.+.|+++.+++.+++.++++.||.|++||--+++++.++.. | +..|.+..|..+++++
T Consensus 241 rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 241 RLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYI 320 (430)
T ss_pred eEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEE
Confidence 999999988765443 4788999999999999999999999999999989998888753 3 4578999999999999
Q ss_pred EEEeCCCeEEEEcCCCCeeeEEEeCCCC--cccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcEEEEEc-cCCCcEE
Q 022910 207 CTGSDDATLRVWNPKSGENIHVIRGHPY--HTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGKVVSSLV-SHTDSIE 282 (290)
Q Consensus 207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~-~~~~~v~ 282 (290)
++++.|..+++|.+.+++.+..+.+... ...--+...|+....|++.-.. .+.+.-||.+++..+..+. +|++.++
T Consensus 321 LsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R 400 (430)
T KOG0640|consen 321 LSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVR 400 (430)
T ss_pred eecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCce
Confidence 9999999999999999999988876421 1122345567777777766544 5689999999987766654 7999999
Q ss_pred EEEEecCC
Q 022910 283 CIGFSRSE 290 (290)
Q Consensus 283 ~i~~s~d~ 290 (290)
.|.-||.+
T Consensus 401 ~i~HSP~~ 408 (430)
T KOG0640|consen 401 WIVHSPVE 408 (430)
T ss_pred EEEeCCCC
Confidence 99999864
No 96
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.9e-28 Score=187.59 Aligned_cols=232 Identities=22% Similarity=0.443 Sum_probs=201.0
Q ss_pred CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEcc------C-----------------------------
Q 022910 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN------Q----------------------------- 96 (290)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~------~----------------------------- 96 (290)
....++..+.||.+.|++++|++ .+.++++++.|++-.||... .
T Consensus 178 Esg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~s 256 (481)
T KOG0300|consen 178 ESGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKS 256 (481)
T ss_pred ccccceeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccccc
Confidence 35788999999999999999999 88899999999999999731 1
Q ss_pred -----CeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCC
Q 022910 97 -----GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171 (290)
Q Consensus 97 -----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 171 (290)
..++..+.+|.+.|.+..|...++.+++++.|.+..+||++++.++..+.+|....+.++-+|..+++++++.|.
T Consensus 257 D~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDt 336 (481)
T KOG0300|consen 257 DGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDT 336 (481)
T ss_pred CCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCc
Confidence 014456788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCcc-cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcCCCC
Q 022910 172 TVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADST 249 (290)
Q Consensus 172 ~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 249 (290)
+.++||++.. ..+..|++|...|+++.|..+ ..+++|+.|.+|++||+++.. ++.++. ..++++.++.+..+.
T Consensus 337 TFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR----tdS~~NRvavs~g~~ 411 (481)
T KOG0300|consen 337 TFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR----TDSPANRVAVSKGHP 411 (481)
T ss_pred eeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee----cCCccceeEeecCCc
Confidence 9999999854 567889999999999999865 468999999999999999765 355666 578899999998888
Q ss_pred EEEEEeCCCcEEEEEcCCCcEE----EEEccCCCcEEEEEEecC
Q 022910 250 LALSGSKDGSVHMVNITTGKVV----SSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 250 ~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~v~~i~~s~d 289 (290)
+++.--.+..|++||++..++. ..-++|..-|+|.+|..+
T Consensus 412 iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 412 IIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred eEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence 9999988999999999644322 233578889999999753
No 97
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.3e-28 Score=185.53 Aligned_cols=234 Identities=19% Similarity=0.295 Sum_probs=184.2
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-----------------------------------
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----------------------------------- 98 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------------------------------- 98 (290)
+-.+..|+||.+.|++++|+. +++.|||++.|++|++|++..-.
T Consensus 76 pl~~~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 76 PLNVSVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred chhhhhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence 445667899999999999999 88999999999999999985310
Q ss_pred -eeeee-----------------------ccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEE
Q 022910 99 -WASEI-----------------------QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEW 154 (290)
Q Consensus 99 -~~~~~-----------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 154 (290)
.+..+ ..|+-.|..+-...++.+|++++.|..|.+|++. |+.+..+.......+.
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD 233 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence 00000 1234455556666677899999999999999998 8888888877777888
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEECC---cc-----cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC---
Q 022910 155 VSWHPRGHIVLAGSEDSTVWMWNAD---RA-----AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG--- 223 (290)
Q Consensus 155 i~~~~~~~~l~~~~~dg~i~i~d~~---~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--- 223 (290)
.+.+|+|+++++++..-.|++|.+- .+ ..+..+++|.+.|..++|+|+...+++.+.||.+++||..-.
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 9999999999999999999999853 22 235577899999999999999999999999999999997521
Q ss_pred -eeeEEEeCC----CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc-cCCCcEEEEEEecCC
Q 022910 224 -ENIHVIRGH----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-SHTDSIECIGFSRSE 290 (290)
Q Consensus 224 -~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~s~d~ 290 (290)
+-.+.++.. ....+....+.++|.|+.|+.+. ...+++|..++|+..-.+. .|...|++|+|+++|
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g 385 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDG 385 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCC
Confidence 111222111 11233445899999999998765 4589999999998887776 589999999999986
No 98
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1e-28 Score=189.10 Aligned_cols=227 Identities=24% Similarity=0.438 Sum_probs=194.7
Q ss_pred ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 135 (290)
.++.|.||++.|..++-.. ...++.+++.|.+.+||.+++++++..+.+|.+.|.+++|++.+.++++++.|++-.||.
T Consensus 140 lvre~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred ehhhhcccccceeeehhhc-CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 4566789999999999887 677999999999999999999999999999999999999999999999999999999996
Q ss_pred C------CC----------------------------------CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEE
Q 022910 136 P------SS----------------------------------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM 175 (290)
Q Consensus 136 ~------~~----------------------------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i 175 (290)
. .. ..++..+.+|.+.|.+..|-..+..+++++.|.+..+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 2 10 0234567889999999999999999999999999999
Q ss_pred EECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe
Q 022910 176 WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (290)
Q Consensus 176 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 255 (290)
||++++.++..+.+|...++.++-+|..+++++++.|.+.++||++. .+..+....+|...|+++.|..+. .+++|+
T Consensus 299 wDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd-~vVSgS 375 (481)
T KOG0300|consen 299 WDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDD-RVVSGS 375 (481)
T ss_pred eeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccccceeEEEEecCC-ceeecC
Confidence 99999999999999999999999999999999999999999999983 333433344489999999998754 678999
Q ss_pred CCCcEEEEEcCCCc-EEEEEccCCCcEEEEEEe
Q 022910 256 KDGSVHMVNITTGK-VVSSLVSHTDSIECIGFS 287 (290)
Q Consensus 256 ~dg~i~~wd~~~~~-~~~~~~~~~~~v~~i~~s 287 (290)
.|.+|++||+++.+ ++.++.. ..+++.++.+
T Consensus 376 DDrTvKvWdLrNMRsplATIRt-dS~~NRvavs 407 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIRT-DSPANRVAVS 407 (481)
T ss_pred CCceEEEeeeccccCcceeeec-CCccceeEee
Confidence 99999999998864 5566554 3455555544
No 99
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=3.3e-28 Score=189.74 Aligned_cols=212 Identities=19% Similarity=0.327 Sum_probs=171.7
Q ss_pred CCceeeeccCCcCEEEEEECCC-CCcEEEEecCCCcEEEEEccC----------------CeeeeeeccccCCEEEEEEC
Q 022910 54 DDSTHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQ----------------GDWASEIQGHKDSVSSLAFS 116 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~----------------~~~~~~~~~~~~~i~~~~~~ 116 (290)
+.......+|.+.|+.+.-.+. +..+.|+-+..|.|.||++.. .+++.++.+|...=+.++||
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWS 220 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWS 220 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecc
Confidence 3444555678888888887775 345677778899999999853 34677788999999999999
Q ss_pred CCC-CEEEEEeCCCcEEEEcCCCCceE---EEEecCCCCEEEEEEcCC-CCEEEEeeCCCeEEEEECCccc---EEEeee
Q 022910 117 MDG-QLLASGGLDGLVQIWDPSSGNLK---CTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAA---YLNMFS 188 (290)
Q Consensus 117 ~~~-~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~---~~~~~~ 188 (290)
|-. ..|++|..-+.|++|...++... ..+.+|...|-.++|+|. ...|++|+.||.|+|||+|.+. ++.+ +
T Consensus 221 p~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-k 299 (440)
T KOG0302|consen 221 PIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-K 299 (440)
T ss_pred cccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-e
Confidence 933 25888888899999999887543 345679999999999996 4589999999999999999883 3333 7
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcC
Q 022910 189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNIT 266 (290)
Q Consensus 189 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~ 266 (290)
.|.+.|..|.|+....+|++|+.||+++|||+|+.+.-..+.....|..+|+++.|+| +...|++++.|.+|.+||+.
T Consensus 300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 8999999999999888999999999999999997554333333334999999999999 56788899999999999985
No 100
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.8e-29 Score=193.70 Aligned_cols=208 Identities=25% Similarity=0.373 Sum_probs=184.9
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLV 131 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (290)
..+..-.|--|..+|.|+.|+. +...+|+|+.||.|++|.+.+|.++.++. .|...|+|+.|+.++..+++++.|.++
T Consensus 252 kYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tv 330 (508)
T KOG0275|consen 252 KYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTV 330 (508)
T ss_pred hhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceE
Confidence 3444455666889999999999 88899999999999999999999999987 899999999999999999999999999
Q ss_pred EEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec----------------------
Q 022910 132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG---------------------- 189 (290)
Q Consensus 132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------------- 189 (290)
+|.-+.+|+++..+++|.+.|+...|.++|.++++++.||+|++|+..+..++.+++.
T Consensus 331 RiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV 410 (508)
T KOG0275|consen 331 RIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV 410 (508)
T ss_pred EEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE
Confidence 9999999999999999999999999999999999999999999999887655433321
Q ss_pred -------------------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEE
Q 022910 190 -------------------------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI 244 (290)
Q Consensus 190 -------------------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 244 (290)
..+...+.+++|.|.++++.+.|+.++.|...+|+...++.. |...+..++-
T Consensus 411 CNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V---hEkdvIGl~H 487 (508)
T KOG0275|consen 411 CNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV---HEKDVIGLTH 487 (508)
T ss_pred EcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec---cccccccccc
Confidence 123344567899999999999999999999999998888877 7788899999
Q ss_pred cCCCCEEEEEeCCCcEEEEE
Q 022910 245 SADSTLALSGSKDGSVHMVN 264 (290)
Q Consensus 245 ~~~~~~l~~~~~dg~i~~wd 264 (290)
+|..+.||+-+.||.+++|.
T Consensus 488 HPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 488 HPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CcccchhhhhcccchhhhcC
Confidence 99999999999999999994
No 101
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5e-29 Score=193.41 Aligned_cols=228 Identities=15% Similarity=0.252 Sum_probs=198.9
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 132 (290)
....+..|.||.+.|.|++=+|..-..+++|+.||.|+|||+.+..+...+..|.+.|..|++.. ..+++++.|.+|+
T Consensus 55 akPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 55 AKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVK 132 (433)
T ss_pred hccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCccee
Confidence 45678888999999999999995558899999999999999999999999999999999999976 6788999999999
Q ss_pred EEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCC-CEEEEEeC
Q 022910 133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG-KTICTGSD 211 (290)
Q Consensus 133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~ 211 (290)
.|-+.. .++.++.+. +.+..+.-+..+..++|++. .|.|||.+...+++.+......|.++.|+|.. ..|+++..
T Consensus 133 ~wk~~~-~p~~tilg~-s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s 208 (433)
T KOG0268|consen 133 QWKIDG-PPLHTILGK-SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS 208 (433)
T ss_pred eeeccC-Ccceeeecc-ccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeecc
Confidence 999875 466666543 44777887777888998875 69999999999999999888899999999955 56677779
Q ss_pred CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-cEEEEEccCCCcEEEEEEecCC
Q 022910 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
|+.|.+||++++.+++.+. ....-+.++|+|.+-.+++|+.|..++.||++.. .++....+|.+.|.++.|||-|
T Consensus 209 DrsIvLyD~R~~~Pl~KVi----~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG 284 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVI----LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG 284 (433)
T ss_pred CCceEEEecccCCccceee----eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc
Confidence 9999999999999988776 4566788999998888999999999999999874 5788889999999999999976
No 102
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=2e-27 Score=180.08 Aligned_cols=213 Identities=20% Similarity=0.371 Sum_probs=178.2
Q ss_pred ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe----------eeee-----eccccCCEEEEEECC-CC
Q 022910 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----------WASE-----IQGHKDSVSSLAFSM-DG 119 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------~~~~-----~~~~~~~i~~~~~~~-~~ 119 (290)
.....+.|.+.|+++...+..++++++|+.||.|.+||++... .+.. -.+|.-.|..+.|.| +.
T Consensus 35 d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 35 DKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred CcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence 3445567999999999999999999999999999999997632 1111 135788999999999 55
Q ss_pred CEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCC---CCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEE
Q 022910 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR---GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC 196 (290)
Q Consensus 120 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 196 (290)
..|.+++.|.+++|||.++.+....|+- .+.|..-+|+|- ..++|+|..+-.|++.|+.++.....+.+|...|.+
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA 193 (397)
T ss_pred ceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence 5888999999999999999998888874 456888899883 458889999999999999999999999999999999
Q ss_pred EEEcCCCCE-EEEEeCCCeEEEEcCCCC-eeeEEE-----------eCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 022910 197 GDFTPDGKT-ICTGSDDATLRVWNPKSG-ENIHVI-----------RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV 263 (290)
Q Consensus 197 ~~~~~~~~~-l~~~~~dg~i~i~d~~~~-~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 263 (290)
+.|+|...+ |++|+.||.|++||++.- .+...+ +....|.+.++.++|+.++.++++++.|..+++|
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW 273 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence 999997665 578999999999999854 233333 2233477889999999999999999999999999
Q ss_pred EcCCCc
Q 022910 264 NITTGK 269 (290)
Q Consensus 264 d~~~~~ 269 (290)
+..+|+
T Consensus 274 n~~~G~ 279 (397)
T KOG4283|consen 274 NMESGR 279 (397)
T ss_pred ecccCc
Confidence 987764
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.9e-28 Score=202.93 Aligned_cols=209 Identities=25% Similarity=0.438 Sum_probs=190.1
Q ss_pred ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC--eeeeeeccccCCEEEEEE-CCCCCEEEEEeCCCcEE
Q 022910 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG--DWASEIQGHKDSVSSLAF-SMDGQLLASGGLDGLVQ 132 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~ 132 (290)
.+..+..|.+-|..++... .++.|++++.|-+|++|+...+ -+...+..|...|.|++. .++...+|+|+.|+.|.
T Consensus 65 ~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~If 143 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIF 143 (735)
T ss_pred hhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEE
Confidence 4888999999999999887 6667889999999999999887 567788899999999999 78888999999999999
Q ss_pred EEcCCCCc--eEE--------EEe-cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC
Q 022910 133 IWDPSSGN--LKC--------TLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP 201 (290)
Q Consensus 133 i~d~~~~~--~~~--------~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 201 (290)
+||++++. .+. .+. ++..+|++++.++.|..|++|+..+.|++||.++.+.+..+.+|...|.++..++
T Consensus 144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d 223 (735)
T KOG0308|consen 144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND 223 (735)
T ss_pred EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC
Confidence 99999772 222 222 6777899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 022910 202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (290)
Q Consensus 202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 268 (290)
+|+.+++++.||+|++||+...+++.++.. |...|+++..+|+-..+++|+.||.|+.=|+++.
T Consensus 224 DGt~~ls~sSDgtIrlWdLgqQrCl~T~~v---H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 224 DGTRLLSASSDGTIRLWDLGQQRCLATYIV---HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CCCeEeecCCCceEEeeeccccceeeeEEe---ccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 999999999999999999999999999887 7788999999999999999999999999999884
No 104
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-27 Score=196.85 Aligned_cols=209 Identities=26% Similarity=0.451 Sum_probs=186.5
Q ss_pred CCCceeeecc-CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee-eccccCCEEEEEECCCCCEEEEEeCCCc
Q 022910 53 PDDSTHIFSG-HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-IQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (290)
Q Consensus 53 ~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 130 (290)
..+.++.+.+ |...|-+++|+. ..+.+|+.++.|..+|+...+.... +.+|...|..++|++++.++|+|+.|+.
T Consensus 248 ~~k~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~ 324 (484)
T KOG0305|consen 248 EQKKTRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNV 324 (484)
T ss_pred hccccccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccc
Confidence 3556677777 999999999984 6888999999999999998766555 8899999999999999999999999999
Q ss_pred EEEEcCCCCceEEEEecCCCCEEEEEEcC-CCCEEEEee--CCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEE
Q 022910 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207 (290)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 207 (290)
+.|||.....+...+..|.+.|.+++|+| ...+||+|+ .|++|++||..+++.+..+. ..+.|..|.|++..+-|+
T Consensus 325 ~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~ 403 (484)
T KOG0305|consen 325 VFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELL 403 (484)
T ss_pred eEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEE
Confidence 99999988899999999999999999999 566888865 59999999999999888876 568899999999887776
Q ss_pred E--EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 022910 208 T--GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (290)
Q Consensus 208 ~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 268 (290)
+ |..+..|.||+..+.+++..+.+ |...|..++++|+|..+++|+.|.++++|++-..
T Consensus 404 sthG~s~n~i~lw~~ps~~~~~~l~g---H~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 404 STHGYSENQITLWKYPSMKLVAELLG---HTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EecCCCCCcEEEEeccccceeeeecC---CcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 5 45577899999999888888887 8889999999999999999999999999998764
No 105
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.7e-28 Score=179.37 Aligned_cols=230 Identities=22% Similarity=0.322 Sum_probs=187.1
Q ss_pred eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC---eeeeeeccccCCEEEEEECC--CCCEEEEEeCCCcE
Q 022910 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---DWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLV 131 (290)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i 131 (290)
...-..|.+.|..+...- .+..|||++.|++|+|+.+... +++..+.+|.+||..++|.. .|..||+++.||.|
T Consensus 4 q~idt~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred eehhhhhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence 345578999999988877 7889999999999999999864 56788999999999999965 78999999999999
Q ss_pred EEEcCCCCce--EEEEecCCCCEEEEEEcCC--CCEEEEeeCCCeEEEEECCcc---cEEEeeecCCCCeEEEEEcCC--
Q 022910 132 QIWDPSSGNL--KCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFTPD-- 202 (290)
Q Consensus 132 ~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~-- 202 (290)
.||.-..++- ...+..|...+++++|.|. |-.|++++.||.|.|.+.+.. ...+....|.-.|++++|.|.
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 9999887743 3456679999999999985 569999999999999998765 234556679999999999995
Q ss_pred -C-----------CEEEEEeCCCeEEEEcCCCCe--eeEEEeCCCCcccCeEEEEEcCCC----CEEEEEeCCCcEEEEE
Q 022910 203 -G-----------KTICTGSDDATLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISADS----TLALSGSKDGSVHMVN 264 (290)
Q Consensus 203 -~-----------~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~~wd 264 (290)
| +.|++|+.|..|+||+..+++ .-.++.+ |...|+.++|.|.- .+||+++.||++.||-
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~---H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG---HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh---cchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 4 569999999999999998762 1223444 89999999999943 5899999999999998
Q ss_pred cCCCc---EEEEEccCCCcEEEEEEecCC
Q 022910 265 ITTGK---VVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 265 ~~~~~---~~~~~~~~~~~v~~i~~s~d~ 290 (290)
..... ....+......++.++||+.|
T Consensus 240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sG 268 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSG 268 (299)
T ss_pred ecCccCcccccccccCCcceEEEEEeccc
Confidence 76321 122233355789999999875
No 106
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.2e-27 Score=187.79 Aligned_cols=226 Identities=26% Similarity=0.417 Sum_probs=195.0
Q ss_pred eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeee----ee---e-----------ccccCCEEEEEECCC
Q 022910 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA----SE---I-----------QGHKDSVSSLAFSMD 118 (290)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----~~---~-----------~~~~~~i~~~~~~~~ 118 (290)
...+..|.-+|.|++++| +..+.++++.+|+|.-|++.+++.. .+ + +.|...+.+++.+++
T Consensus 135 ~~~~~~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 678889999999999999 6778889999999999999877632 11 0 267888999999999
Q ss_pred CCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEE
Q 022910 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD 198 (290)
Q Consensus 119 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 198 (290)
++||++|+.|..|.||+..+.+.++.+++|.+.|.+++|-.....|++++.|+.|++|++.....+.++.+|+..|..|.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc-cC
Q 022910 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-SH 277 (290)
Q Consensus 199 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~ 277 (290)
....++.+-+|+.|+++++|++.... ...+.+ +.+.+.|++|-.+ ..+++|+.+|.|.+|++-+.+++.+.. +|
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~ees-qlifrg---~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPEES-QLIFRG---GEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred hhcccceEEeccccceeEEEeccccc-eeeeeC---CCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccc
Confidence 98888888889999999999995433 234444 6778999999854 578899999999999999999888765 23
Q ss_pred C-----------CcEEEEEEec
Q 022910 278 T-----------DSIECIGFSR 288 (290)
Q Consensus 278 ~-----------~~v~~i~~s~ 288 (290)
. .+|++++..|
T Consensus 369 gv~~~~~~~~~~~Witsla~i~ 390 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIP 390 (479)
T ss_pred cccCCccccccccceeeeEecc
Confidence 1 1677777655
No 107
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.5e-27 Score=181.10 Aligned_cols=232 Identities=15% Similarity=0.246 Sum_probs=185.1
Q ss_pred CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (290)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (290)
.|.+...++.... ..|+.|++ .|.+||+|+.+|.|.|||+.+......+.+|..+|++++|+++|++|+++|.|..|
T Consensus 13 ~PEel~~tld~~~--a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 13 YPEELTHTLDNPL--AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSI 89 (405)
T ss_pred ChHhhceeccCCc--cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCcee
Confidence 3444555555433 78999999 88999999999999999999999888899999999999999999999999999999
Q ss_pred EEEcCCCCceEEEEecCCCCEE-----------------------------------------------EEEEcCCCCEE
Q 022910 132 QIWDPSSGNLKCTLEGPGGGVE-----------------------------------------------WVSWHPRGHIV 164 (290)
Q Consensus 132 ~i~d~~~~~~~~~~~~~~~~i~-----------------------------------------------~i~~~~~~~~l 164 (290)
.+||+..|.+++.+.- .++|+ +..|.+.|+++
T Consensus 90 ~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yI 168 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYI 168 (405)
T ss_pred EEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEE
Confidence 9999998877665421 11111 22355667899
Q ss_pred EEeeCCCeEEEEECCcccEEEeeecCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee------e---EEEeCCCC
Q 022910 165 LAGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN------I---HVIRGHPY 234 (290)
Q Consensus 165 ~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~---~~~~~~~~ 234 (290)
++|...|.+.+|+..+.+++..++... ..|..+.++..|++|++.+.|..||.|+++.--. + +.++.. .
T Consensus 169 itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv-V 247 (405)
T KOG1273|consen 169 ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV-V 247 (405)
T ss_pred EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH-H
Confidence 999999999999999999998887665 7899999999999999999999999999862110 0 111100 0
Q ss_pred cccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcEEEEEccCC-CcEEEEEEec
Q 022910 235 HTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGKVVSSLVSHT-DSIECIGFSR 288 (290)
Q Consensus 235 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~-~~v~~i~~s~ 288 (290)
....-.+++|+.+|.|+++|+. -..+++|....|.+++.+.+.. .....+.|+|
T Consensus 248 Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp 303 (405)
T KOG1273|consen 248 NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP 303 (405)
T ss_pred hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc
Confidence 2345678899999999988875 3579999999999999999877 4566777776
No 108
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=4.7e-29 Score=208.73 Aligned_cols=201 Identities=25% Similarity=0.434 Sum_probs=187.4
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (290)
..++..|.+|..+|.++.|++ ...+|++|+.+|+|++||+...+.++++.+|...+..+.|+|-+.|++.|+.|+.+++
T Consensus 60 p~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~i 138 (825)
T KOG0267|consen 60 PNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKI 138 (825)
T ss_pred CchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccccccee
Confidence 344556999999999999999 8899999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 022910 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (290)
Q Consensus 134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 213 (290)
||++...+...+.+|...+.++.|+|+|++++.|+.|..++|||+..++.+..|..|...+.++.|+|..-+++.|+.|+
T Consensus 139 wD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~ 218 (825)
T KOG0267|consen 139 WDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR 218 (825)
T ss_pred hhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC
Q 022910 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258 (290)
Q Consensus 214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 258 (290)
+|++||+++...+..... ....|.+.+|+|++..+++|....
T Consensus 219 tv~f~dletfe~I~s~~~---~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 219 TVRFWDLETFEVISSGKP---ETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeeeeccceeEEeeccCC---ccCCceeeeecCCceeeecCchhh
Confidence 999999998877666655 577899999999999999886653
No 109
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.6e-27 Score=174.96 Aligned_cols=215 Identities=25% Similarity=0.345 Sum_probs=175.2
Q ss_pred CCCCceeeeccCCcCEEEEEEC-CCCCcEEEEecCCCcEEEEEccCCeee--eeeccccCCEEEEEECCC--CCEEEEEe
Q 022910 52 QPDDSTHIFSGHSDEVYSVACS-PTDATLVATGGGDDKGFFWRINQGDWA--SEIQGHKDSVSSLAFSMD--GQLLASGG 126 (290)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~i~~~~~~~~--~~~l~~~~ 126 (290)
.+...+..|+||+++|..++|. |.-+.+||+++.||.|.||.-.+++.. .....|...|++++|.|. |-.|++++
T Consensus 44 ~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lacas 123 (299)
T KOG1332|consen 44 GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACAS 123 (299)
T ss_pred CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEee
Confidence 3457899999999999999985 667889999999999999999887543 345679999999999985 45899999
Q ss_pred CCCcEEEEcCCCC---ceEEEEecCCCCEEEEEEcCC---C-----------CEEEEeeCCCeEEEEECCccc--EEEee
Q 022910 127 LDGLVQIWDPSSG---NLKCTLEGPGGGVEWVSWHPR---G-----------HIVLAGSEDSTVWMWNADRAA--YLNMF 187 (290)
Q Consensus 127 ~dg~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~--~~~~~ 187 (290)
.||.|.|++.+.. ........|.-.+++++|.|- | +.|++|+.|..|+||+..... .-+++
T Consensus 124 SDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l 203 (299)
T KOG1332|consen 124 SDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL 203 (299)
T ss_pred CCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh
Confidence 9999999998765 122345678888999999985 4 579999999999999998763 33558
Q ss_pred ecCCCCeEEEEEcCCC----CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 022910 188 SGHGSSVTCGDFTPDG----KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV 263 (290)
Q Consensus 188 ~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 263 (290)
.+|...|+.++|.|.- .+|++++.||+|.||-.+.................+..+.|++.|++|++++.|+.|.+|
T Consensus 204 ~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 204 EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW 283 (299)
T ss_pred hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence 8999999999999943 579999999999999776332222222222256789999999999999999999999999
Q ss_pred EcC
Q 022910 264 NIT 266 (290)
Q Consensus 264 d~~ 266 (290)
.-.
T Consensus 284 ke~ 286 (299)
T KOG1332|consen 284 KEN 286 (299)
T ss_pred EeC
Confidence 754
No 110
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.9e-27 Score=192.30 Aligned_cols=201 Identities=26% Similarity=0.346 Sum_probs=164.4
Q ss_pred ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeee-eee-----ccccCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-SEI-----QGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (290)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (290)
+||...++|.+|+|.....|+|++.||++|||++...+.. ..+ .+..-+++.++|++++++||+|+.||+|.+|
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW 344 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence 3699999999999988899999999999999999875422 222 2334578999999999999999999999999
Q ss_pred cCCCCce---EEEEecCCC--CEEEEEEcCCCCEEEEeeCCCeEEEEECCccc-EEEeeecC--CCCeEEEEEcCCCCEE
Q 022910 135 DPSSGNL---KCTLEGPGG--GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGH--GSSVTCGDFTPDGKTI 206 (290)
Q Consensus 135 d~~~~~~---~~~~~~~~~--~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~--~~~i~~~~~~~~~~~l 206 (290)
+...... ...-..|.. .|+||.|+++|++|++-+.|+++++||+++.+ ++....+. ..+-+.++|||+.++|
T Consensus 345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli 424 (641)
T KOG0772|consen 345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLI 424 (641)
T ss_pred ecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEE
Confidence 9754422 122345655 89999999999999999999999999999864 45444432 2345778999999999
Q ss_pred EEEeC------CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 022910 207 CTGSD------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (290)
Q Consensus 207 ~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd 264 (290)
++|+. .|.+.+||..+...++.+.. ....|..+.|+|.-+.|++|+.||.+++|=
T Consensus 425 ~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i---~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 425 LTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI---STASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EecccccCCCCCceEEEEeccceeeEEEecC---CCceEEEEeecchhhheeeecCCCceEEEE
Confidence 99853 57899999999998888876 467789999999888899999999999874
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.4e-26 Score=196.32 Aligned_cols=220 Identities=20% Similarity=0.316 Sum_probs=192.2
Q ss_pred CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceE
Q 022910 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK 142 (290)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 142 (290)
+...|.+++... ..|++|+.+++|.+|.+..++.-..+....-++++++|+.+|+++|.||.|-.|++.++.+....
T Consensus 55 ~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~ 131 (933)
T KOG1274|consen 55 SGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE 131 (933)
T ss_pred cCceeEEEeecc---cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh
Confidence 788899988764 47889999999999999998877777777889999999999999999999999999999999999
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec--------CCCCeEEEEEcCCCCEEEEEeCCCe
Q 022910 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--------HGSSVTCGDFTPDGKTICTGSDDAT 214 (290)
Q Consensus 143 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~ 214 (290)
..+++|.++|.++.|+|++++||+.+.||.|++|++..+.+...+.+ ....+..++|+|++..|++.+.|+.
T Consensus 132 ~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~ 211 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT 211 (933)
T ss_pred eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence 99999999999999999999999999999999999999876665543 1456788999999888988899999
Q ss_pred EEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
|++|+..+......+.... +...++.++|+|+|.|||+++.+|.|.|||+.+... ......|.+++|.|++
T Consensus 212 Vkvy~r~~we~~f~Lr~~~-~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 212 VKVYSRKGWELQFKLRDKL-SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNA 282 (933)
T ss_pred EEEEccCCceeheeecccc-cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCC
Confidence 9999999999888887654 445599999999999999999999999999987222 2234689999998864
No 112
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=179.92 Aligned_cols=223 Identities=17% Similarity=0.252 Sum_probs=187.8
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccC--CeeeeeeccccCCEEEEEECCCCC-EEEEEeCCCcEEEEcCCCCc
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--GDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGN 140 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 140 (290)
.+.|+++.|+| ...++++++.||+++||.+.. ...+..+.-...+|.+..|.|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 57899999999 888899999999999999864 344555655678999999999999 89999999999999999887
Q ss_pred eEEEE--ecC-CCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 022910 141 LKCTL--EGP-GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217 (290)
Q Consensus 141 ~~~~~--~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 217 (290)
....- .++ ...+.....+|++++|++.+..|.|.+....+++.+..++ ..+.|..++|+.+++.|++++.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 54332 222 2357778889999999999999999999999999998887 5678999999999999999999999999
Q ss_pred EcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------CcEEEEEccCCCcEEEEEEecCC
Q 022910 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT------GKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 218 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~------~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
||++...+++.+... ..-.-++++.++++.|||+|+..|.|.|||.++ .+++..+..-...|++++|+||.
T Consensus 371 ~nl~~~~~~~rf~D~--G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~ 447 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDD--GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA 447 (514)
T ss_pred EecCCcceEEEEeec--CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch
Confidence 999999888887642 122346677788999999999999999999653 56778777777899999999974
No 113
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-25 Score=171.37 Aligned_cols=207 Identities=22% Similarity=0.348 Sum_probs=173.8
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 132 (290)
.++.++.|.||...|..|+.+| ....+++++.|++|++||++..++...+..... ..++|.|.|-++|++.....|+
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~Ik 165 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIK 165 (311)
T ss_pred cCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEE
Confidence 5788999999999999999999 668888999999999999998777776654433 3578999999999998888999
Q ss_pred EEcCCCC--ceEEEEec---CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCe---EEEEEcCCCC
Q 022910 133 IWDPSSG--NLKCTLEG---PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSV---TCGDFTPDGK 204 (290)
Q Consensus 133 i~d~~~~--~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i---~~~~~~~~~~ 204 (290)
+||++.. .+-.++.. .....+.|.|+|+|++|+.++..+.+++.|.-+|..+..+..+...- -..+|+|+++
T Consensus 166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK 245 (311)
T ss_pred EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence 9999864 33444433 35678999999999999999999999999999999888887654432 5678999999
Q ss_pred EEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910 205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (290)
Q Consensus 205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 266 (290)
++++|+.||+|.+|+++++..+..+.+. +..++.++.|+|.-.++++++ ..+.+|=..
T Consensus 246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~~--~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~ 303 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNLETGKKVAVLRGP--NGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD 303 (311)
T ss_pred EEEEecCCCcEEEEEcCCCcEeeEecCC--CCCCccccccCCceeeeeecC--ceEEEEecc
Confidence 9999999999999999999999998875 678899999999876776664 467777543
No 114
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.2e-27 Score=188.49 Aligned_cols=235 Identities=21% Similarity=0.338 Sum_probs=207.8
Q ss_pred CCCCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe--eeeeeccccCCEEEEEECCCCCEEEEE
Q 022910 48 ENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASG 125 (290)
Q Consensus 48 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~ 125 (290)
-....|......+..|.+.|..+.|-+ +...|++|+.|..|++|++...+ .+.++.+..++|+.+.|.+++++++++
T Consensus 159 v~~~lpS~~~~~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAa 237 (459)
T KOG0288|consen 159 VEDTLPSRALFVLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAA 237 (459)
T ss_pred hhcccchhhhhhhhccccccceeEEcc-CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEee
Confidence 345678888999999999999999999 77789999999999999998766 677788888999999999999999999
Q ss_pred eCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCE
Q 022910 126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT 205 (290)
Q Consensus 126 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 205 (290)
+.|+.+++|++...+...++.+|...|+++.|......+++|+.|.+|+.||+.+..+.+++. ..+.+..|..+ +..
T Consensus 238 s~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~ 314 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISD 314 (459)
T ss_pred cCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--cee
Confidence 999999999999999999999999999999998877779999999999999999988887765 34556666665 557
Q ss_pred EEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC----CCcE
Q 022910 206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH----TDSI 281 (290)
Q Consensus 206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~v 281 (290)
+++|..|+.|++||.++..+...+.. .+.|+++..++++..|++++.|.++.+.|+++......+.+. ....
T Consensus 315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~----gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 315 VISGHFDKKVRFWDIRSADKTRSVPL----GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW 390 (459)
T ss_pred eeecccccceEEEeccCCceeeEeec----CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence 88999999999999999999888874 458999999999999999999999999999999888877642 2358
Q ss_pred EEEEEecCC
Q 022910 282 ECIGFSRSE 290 (290)
Q Consensus 282 ~~i~~s~d~ 290 (290)
+.+.|||++
T Consensus 391 trvvfSpd~ 399 (459)
T KOG0288|consen 391 TRVVFSPDG 399 (459)
T ss_pred ceeEECCCC
Confidence 899999986
No 115
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.6e-26 Score=186.33 Aligned_cols=219 Identities=16% Similarity=0.280 Sum_probs=188.7
Q ss_pred CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE
Q 022910 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL 145 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 145 (290)
.-.|++... ...++++|+..+.|+|||++...+.+.+++|+..|+++.++-...|||+++..|.|.|..+.++.....|
T Consensus 81 ~~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f 159 (673)
T KOG4378|consen 81 NAFCVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF 159 (673)
T ss_pred hHHHHhhhh-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce
Confidence 334555554 3468889999999999999977777888999999999999999999999999999999999999888888
Q ss_pred ecC-CCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEEee-ecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEcCC
Q 022910 146 EGP-GGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMF-SGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPK 221 (290)
Q Consensus 146 ~~~-~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~ 221 (290)
... ...++-+.|+|..+ +|.+++.+|.|.+||+....++..+ ..|..+...|+|+| +..+|++.+.|..|.+||.+
T Consensus 160 ~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 755 44677999999766 6677899999999999887766554 46999999999999 56778899999999999999
Q ss_pred CCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CcEEEEEccCCCcEEEEEEecC
Q 022910 222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT-GKVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~i~~s~d 289 (290)
.......+. ...+.+.++|+++|.+|++|+..|.|..||++. ..++..+.+|...|++|+|-|.
T Consensus 240 s~~s~~~l~----y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 240 SQASTDRLT----YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred cccccceee----ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 877766666 567899999999999999999999999999986 4578899999999999999764
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=6.5e-26 Score=189.22 Aligned_cols=226 Identities=25% Similarity=0.411 Sum_probs=197.1
Q ss_pred CCCCceeeeccCCcCEEE-EEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCc
Q 022910 52 QPDDSTHIFSGHSDEVYS-VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (290)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 130 (290)
........+.+|.+-|.+ ++|-+.++-.+++|+.|..|.+|.+.+..+...+++|++.|.|+....++. +++||.|.+
T Consensus 45 ~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~T 123 (745)
T KOG0301|consen 45 KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDST 123 (745)
T ss_pred cccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccc
Confidence 344555678888888887 888875666788999999999999999999999999999999999887777 999999999
Q ss_pred EEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe
Q 022910 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS 210 (290)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 210 (290)
+++|.. +++...+.+|..+|++++.-|.+ .+++|+.|.+|++|.- ++.++++.+|...|+.+++.|++ .|++++
T Consensus 124 akvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScs 197 (745)
T KOG0301|consen 124 AKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCS 197 (745)
T ss_pred eEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeec
Confidence 999975 55666799999999999999987 8999999999999975 78899999999999999999864 588999
Q ss_pred CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
.||.|++|++ ++..+..+.+ |..-+.++...+++..+++++.|+++++|+.. .+.+.+.-....|+++.+-++|
T Consensus 198 NDg~Ir~w~~-~ge~l~~~~g---htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng 271 (745)
T KOG0301|consen 198 NDGSIRLWDL-DGEVLLEMHG---HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG 271 (745)
T ss_pred CCceEEEEec-cCceeeeeec---cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC
Confidence 9999999999 7788777777 88889999988888899999999999999975 7778777666788888776554
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.1e-25 Score=188.00 Aligned_cols=201 Identities=23% Similarity=0.390 Sum_probs=176.0
Q ss_pred CCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCc
Q 022910 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (290)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 130 (290)
.....|..+|+||+..|.|++... .+. +++|+.|.++++|... ++...+++|+..|+++++.|.+ .+++||.|.+
T Consensus 88 ~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKt 162 (745)
T KOG0301|consen 88 LSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKT 162 (745)
T ss_pred cCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcce
Confidence 346789999999999999999776 444 7899999999999764 5566699999999999999988 8999999999
Q ss_pred EEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe
Q 022910 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS 210 (290)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 210 (290)
|++|.- ++.+.+|.+|...|+.+++-+++ .|++++.||.|++|++ ++..+..+.+|...++++...+++..+++++
T Consensus 163 IklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 163 IKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred eeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec
Confidence 999975 78889999999999999998754 6899999999999999 7889999999999999999888889999999
Q ss_pred CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (290)
Q Consensus 211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 266 (290)
.|++++||+.. .+.+.+.. ....++++.+-++|. +++|++||.||||...
T Consensus 239 EDrtlriW~~~--e~~q~I~l---PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 239 EDRTLRIWKKD--ECVQVITL---PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred CCceEEEeecC--ceEEEEec---CccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 99999999976 66666663 344788888888776 5678899999999875
No 118
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=5.3e-26 Score=190.68 Aligned_cols=230 Identities=18% Similarity=0.341 Sum_probs=200.7
Q ss_pred eeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC---CCCEEEEEeCCCcEEEEc
Q 022910 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM---DGQLLASGGLDGLVQIWD 135 (290)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d 135 (290)
..-+....+.+++.+| +++.||+|..-|.++||++...+....+..|...|.|+.|+. ..++||+++.|..|+|||
T Consensus 454 s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~D 532 (1080)
T KOG1408|consen 454 STCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYD 532 (1080)
T ss_pred hhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence 3344567899999999 888999999999999999999999999999999999999984 356899999999999999
Q ss_pred CCCC-ceEEEEecCCCCEEEEEEcCCC--CEEEEeeCCCeEEEEECCcccEEEeee-----cCCCCeEEEEEcCCCCEEE
Q 022910 136 PSSG-NLKCTLEGPGGGVEWVSWHPRG--HIVLAGSEDSTVWMWNADRAAYLNMFS-----GHGSSVTCGDFTPDGKTIC 207 (290)
Q Consensus 136 ~~~~-~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~ 207 (290)
+... .+++++.+|...|+++.|...| ..+++++.|..|.+--.++......+. .....++.|+..|..++++
T Consensus 533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~ 612 (1080)
T KOG1408|consen 533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV 612 (1080)
T ss_pred cccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence 9654 5678889999999999998877 689999998877654333221122222 1345789999999999999
Q ss_pred EEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEe
Q 022910 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287 (290)
Q Consensus 208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s 287 (290)
+++.|..|+||++.+++..+.+++...|.+....+...|.|.||++.+.|.++.++|..+|+++.++.+|...|+++.|.
T Consensus 613 t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 613 TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 022910 288 RS 289 (290)
Q Consensus 288 ~d 289 (290)
+|
T Consensus 693 nD 694 (1080)
T KOG1408|consen 693 ND 694 (1080)
T ss_pred cc
Confidence 87
No 119
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=5.6e-26 Score=183.54 Aligned_cols=222 Identities=20% Similarity=0.369 Sum_probs=187.6
Q ss_pred cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe---eeeeec--cccCCEEEEEECCCCCEEEEEeCCCcEEEEcC
Q 022910 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQ--GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (290)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 136 (290)
.|..-|.++.++. ..+.++||+. |-|+|||+.... .+..+. ....-|+++...|+|+.|++|+.-.+|.|||+
T Consensus 417 ~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 4777888888887 6778889885 889999997642 233333 23567999999999999999999999999999
Q ss_pred CCCceEE--EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCe
Q 022910 137 SSGNLKC--TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (290)
Q Consensus 137 ~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 214 (290)
....+.. .+....-...+++.+|+.+..+++..||.|.|||++....++.+++|...+.||.++++|..|.+|+-|.+
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 8765432 33333345778999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
||.||++.++.+.... ..+.|.++..+|.+.+|++|-.++.+.|.... +..-..+..|...|.++.|++.|
T Consensus 575 vRcWDlregrqlqqhd----F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCG 645 (705)
T ss_pred eeehhhhhhhhhhhhh----hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccC
Confidence 9999999988765554 57889999999999999999999999998864 44556677789999999999865
No 120
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2e-26 Score=194.39 Aligned_cols=212 Identities=21% Similarity=0.333 Sum_probs=177.6
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC-CCCEEEEEeCCCcE
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM-DGQLLASGGLDGLV 131 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i 131 (290)
..+.+..|..|...|+++.|++..+++|++|+.||.|++||++..+...++.+....|+.++|+| .+.+|+++...|.|
T Consensus 122 rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~l 201 (839)
T KOG0269|consen 122 RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYL 201 (839)
T ss_pred cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceE
Confidence 45667789999999999999999999999999999999999999988888888889999999998 46689999999999
Q ss_pred EEEcCCCC-ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE--EeeecCCCCeEEEEEcCCCCE-EE
Q 022910 132 QIWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL--NMFSGHGSSVTCGDFTPDGKT-IC 207 (290)
Q Consensus 132 ~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~-l~ 207 (290)
++||++.. ++...+.+|.++|.|+.|+|++.+||+|+.|+.|+||+..+.+.. .++. ...+|.+++|-|...+ |+
T Consensus 202 qlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLA 280 (839)
T KOG0269|consen 202 QLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLA 280 (839)
T ss_pred EEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhh
Confidence 99999865 456678899999999999999999999999999999999866433 3333 4578999999996655 55
Q ss_pred EEe--CCCeEEEEcCCCCeee-EEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q 022910 208 TGS--DDATLRVWNPKSGENI-HVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTG 268 (290)
Q Consensus 208 ~~~--~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~ 268 (290)
+++ .|-.|+|||++..... .++.. |...++.++|.. +...|.+++.||+|..-.++++
T Consensus 281 tcsmv~dtsV~VWDvrRPYIP~~t~~e---H~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 281 TCSMVVDTSVHVWDVRRPYIPYATFLE---HTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred hhhccccceEEEEeeccccccceeeec---cCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 554 3778999999865543 33333 888999999976 6678999999998876665544
No 121
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=2.4e-25 Score=173.88 Aligned_cols=209 Identities=22% Similarity=0.433 Sum_probs=168.8
Q ss_pred CCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeee---eeccccCCEEEEEECCCC-CEEEEE
Q 022910 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS---EIQGHKDSVSSLAFSMDG-QLLASG 125 (290)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~i~~~~~~~~~-~~l~~~ 125 (290)
......++.++.+|.+.=++|+|+|.....|++|..-+.|++|...++.... .+.+|+..|-.++|+|.. ..|++|
T Consensus 197 ~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaSc 276 (440)
T KOG0302|consen 197 KDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASC 276 (440)
T ss_pred cccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEee
Confidence 3356789999999999999999999655567888888999999999876543 356799999999999965 489999
Q ss_pred eCCCcEEEEcCCCCc--eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc---cEEEeeecCCCCeEEEEEc
Q 022910 126 GLDGLVQIWDPSSGN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFT 200 (290)
Q Consensus 126 ~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~ 200 (290)
|.||+|+|||++.+. .....+.|.+.|+.|.|+..-.+||+|+.+|+++|||+|+. +++..++.|..+|++|.|+
T Consensus 277 S~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~ 356 (440)
T KOG0302|consen 277 SCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWH 356 (440)
T ss_pred ecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEec
Confidence 999999999999872 22344789999999999998889999999999999999864 6788999999999999999
Q ss_pred C-CCCEEEEEeCCCeEEEEcCCCCee----------------eEEEeCCCCcccCeEEEEEcCC-CCEEEEEeCCCc
Q 022910 201 P-DGKTICTGSDDATLRVWNPKSGEN----------------IHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGS 259 (290)
Q Consensus 201 ~-~~~~l~~~~~dg~i~i~d~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 259 (290)
| ....|++++.|.+|.+||+..-.- .+.+..|. ....+.-+.|++. ..+|++.+.||.
T Consensus 357 p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 357 PHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred cccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccce
Confidence 9 456788899999999999853211 11122211 3445778899984 457777778874
No 122
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=5.9e-25 Score=187.00 Aligned_cols=178 Identities=18% Similarity=0.299 Sum_probs=162.2
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE---ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE
Q 022910 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL---EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL 184 (290)
Q Consensus 108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 184 (290)
..+++++.++.|++.+.|+..|.|-+|++.+|-....+ ..|.++|+.++...-++.+++++.+|.+++||+.+...+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 46788888899999999999999999999999888888 579999999999988999999999999999999988877
Q ss_pred EeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 022910 185 NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (290)
Q Consensus 185 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd 264 (290)
..+. ....+.++.++.....++++..|-.|+++|..+.+.++.+.+ |...|+.++|||||++|++++.|++|++||
T Consensus 529 ~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g---h~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 529 KSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG---HGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred eeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc---cccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 7776 566788899998888999999999999999999988888888 899999999999999999999999999999
Q ss_pred cCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 265 ITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 265 ~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
+.++.++-.+.. ..+.+++.|||+|
T Consensus 605 lpt~~lID~~~v-d~~~~sls~SPng 629 (910)
T KOG1539|consen 605 LPTGTLIDGLLV-DSPCTSLSFSPNG 629 (910)
T ss_pred ccCcceeeeEec-CCcceeeEECCCC
Confidence 999999998875 6799999999986
No 123
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1e-24 Score=187.33 Aligned_cols=227 Identities=19% Similarity=0.247 Sum_probs=196.3
Q ss_pred ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC-eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 022910 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (290)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 139 (290)
-+|+..-+.|+|.| ++..|++++.||.|++|+.... .....+..+...|.+++. .+.+|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence 47899999999999 7779999999999999998776 444455547778888877 5569999999999999999988
Q ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEc
Q 022910 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (290)
Q Consensus 140 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 219 (290)
..-..+....-++++++|+.+|+++|.|+.|-.|++.++......+.+.+|..+|.++.|+|.+.+||+.+.||.|++|+
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 77666666667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeEEEeCCCCc-----ccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc--CCCcEEEEEEecCC
Q 022910 220 PKSGENIHVIRGHPYH-----TEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS--HTDSIECIGFSRSE 290 (290)
Q Consensus 220 ~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~v~~i~~s~d~ 290 (290)
+.++....++.+.... ...++.++|+|++..|++.+.|+.|++|+..++.....+.. +...+..++|+|.|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence 9998877766544322 34567899999988888888999999999999998888764 34459999999987
No 124
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2e-24 Score=179.96 Aligned_cols=234 Identities=23% Similarity=0.379 Sum_probs=192.8
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeee-eeecc-ccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-SEIQG-HKDSVSSLAFSMDGQLLASGGLDGLV 131 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (290)
-...+.+.--..+|.++||+. ..+.||.+-.+|.|.||++..+-.. ..+.+ ....|-+++|++ +..|++.+.+|.|
T Consensus 15 vhrcrf~d~~Ps~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i 92 (691)
T KOG2048|consen 15 VHRCRFVDYKPSEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSI 92 (691)
T ss_pred EEEEEEEeeeccceEEEEEec-cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceE
Confidence 334455566678999999999 6667999999999999999875332 33433 456899999994 5567888889999
Q ss_pred EEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE--EeeecCCCCeEEEEEcCCCCEEEEE
Q 022910 132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL--NMFSGHGSSVTCGDFTPDGKTICTG 209 (290)
Q Consensus 132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~ 209 (290)
.-||+.++++...+....+.|++++.+|.+..+++|+.||.++.++...++.. +.+....+.|.+++|+|++..+++|
T Consensus 93 ~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~G 172 (691)
T KOG2048|consen 93 TEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGG 172 (691)
T ss_pred EEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEec
Confidence 99999999999999999999999999999999999999998888888777644 3444566899999999999999999
Q ss_pred eCCCeEEEEcCCCCeeeEEE-----eCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEE
Q 022910 210 SDDATLRVWNPKSGENIHVI-----RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284 (290)
Q Consensus 210 ~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i 284 (290)
+.||.|++||..++..+... ........-|+++.|-.+ ..|++|.+-|+|.+||...+.++.++..|.+.|.++
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~L 251 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLAL 251 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEE
Confidence 99999999999998876622 111112344777777754 478899999999999999999999999999999999
Q ss_pred EEecCC
Q 022910 285 GFSRSE 290 (290)
Q Consensus 285 ~~s~d~ 290 (290)
+-.+++
T Consensus 252 av~~~~ 257 (691)
T KOG2048|consen 252 AVADNE 257 (691)
T ss_pred EEcCCC
Confidence 988763
No 125
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=1e-25 Score=179.87 Aligned_cols=232 Identities=16% Similarity=0.189 Sum_probs=181.5
Q ss_pred ceeeeccCCcCEEEEEECCCCC-cEEEEecCCCcEEEEEccCC----eeeeeeccccCCEEEEEECCCC-CEEEEEeCCC
Q 022910 56 STHIFSGHSDEVYSVACSPTDA-TLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSMDG-QLLASGGLDG 129 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg 129 (290)
.....+-|.++|++++|+|... +++|+|..-|+|-+||+.+. .-+..+..|..+|.+|.|+|.+ ..+++.|.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 4456677899999999999766 79999999999999999532 2344567899999999999955 5899999999
Q ss_pred cEEEEcCCCCceEEEEec--CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE-EEeeecCCCCeEEEEEcC-CCCE
Q 022910 130 LVQIWDPSSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY-LNMFSGHGSSVTCGDFTP-DGKT 205 (290)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~ 205 (290)
+|++-|++.+.....+.. ....+..+.|+.....++++..=|.+.+||+++... ...+..|...|.+|+++| ...+
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 999999988754333333 455678888998888888888888999999998765 566677888999999999 5567
Q ss_pred EEEEeCCCeEEEEcCCCCeeeEE--EeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC----CCcEEEEEccCCC
Q 022910 206 ICTGSDDATLRVWNPKSGENIHV--IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT----TGKVVSSLVSHTD 279 (290)
Q Consensus 206 l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~----~~~~~~~~~~~~~ 279 (290)
|++++.|++++|||++....... +... .|...|.+..|||.+..|+|.+.|..|+|||.. .-.+..++. |+.
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~-~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTL-PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecc-cccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence 88999999999999987544332 3322 388999999999987779999999999999983 333444443 221
Q ss_pred ------cEEEEEEecC
Q 022910 280 ------SIECIGFSRS 289 (290)
Q Consensus 280 ------~v~~i~~s~d 289 (290)
......|.|+
T Consensus 416 ~t~RwlT~fKA~W~P~ 431 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPD 431 (498)
T ss_pred cccccccchhheeCCC
Confidence 3445567765
No 126
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.3e-25 Score=166.95 Aligned_cols=205 Identities=20% Similarity=0.328 Sum_probs=169.5
Q ss_pred EEEEecCCCcEEEEEccCC------------eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEe
Q 022910 79 LVATGGGDDKGFFWRINQG------------DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE 146 (290)
Q Consensus 79 ~l~~~~~dg~i~iw~~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 146 (290)
.|++|+....|.-+++... .++..+..|.++|++++. ++.++|+|+.|-+|+|||+.+...+..+-
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence 3566776666666655321 235567789999999999 78999999999999999999999999999
Q ss_pred cCCCCEEEEEEcCCCC--EEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe
Q 022910 147 GPGGGVEWVSWHPRGH--IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224 (290)
Q Consensus 147 ~~~~~i~~i~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 224 (290)
.|.+.|+++.|.+... +|++|+.||.|.+|+.....++..+++|...|+.++.+|.+++.++.+.|+.++.|++..|+
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 9999999999998765 99999999999999999999999999999999999999999999999999999999998776
Q ss_pred eeEEEeCCCC------------------------------------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 022910 225 NIHVIRGHPY------------------------------------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (290)
Q Consensus 225 ~~~~~~~~~~------------------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 268 (290)
.-..+..... ....+.++.|. ++..|++|+.++.|++||..+.
T Consensus 161 ~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~ 239 (362)
T KOG0294|consen 161 VAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSD 239 (362)
T ss_pred cceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCC
Confidence 5333321100 11123344443 5667889999999999999999
Q ss_pred cEEEEEccCCCcEEEEEE
Q 022910 269 KVVSSLVSHTDSIECIGF 286 (290)
Q Consensus 269 ~~~~~~~~~~~~v~~i~~ 286 (290)
.+...+.+|.+.|-++.+
T Consensus 240 ~~~~~~~AH~~RVK~i~~ 257 (362)
T KOG0294|consen 240 TPLTEFLAHENRVKDIAS 257 (362)
T ss_pred ccceeeecchhheeeeEE
Confidence 999999999999998874
No 127
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.3e-24 Score=162.87 Aligned_cols=229 Identities=21% Similarity=0.329 Sum_probs=177.5
Q ss_pred eeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC----eeeeeeccccCCEEEEEECC--CCCEEEEEeCCCcEE
Q 022910 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQ 132 (290)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~ 132 (290)
.-.+|.+-|+++.|.+ .|+.+|+|+.|++|+|||.... .+....+.|.+.|..+.|.+ -|+.+|+++.|+++.
T Consensus 8 i~s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cccCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 3468999999999999 8899999999999999997543 35556778999999999964 588999999999999
Q ss_pred EEcCCCC---------ceEEEEecCCCCEEEEEEcCC--CCEEEEeeCCCeEEEEECCcccE------EEeee-------
Q 022910 133 IWDPSSG---------NLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAAY------LNMFS------- 188 (290)
Q Consensus 133 i~d~~~~---------~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~~~------~~~~~------- 188 (290)
||.-... ....++....+.|+.+.|.|. |-.||+++.||.++||+.-.... ...++
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 9975211 223455666778999999994 67999999999999998654322 22222
Q ss_pred cCCCCeEEEEEcC---CCCEEEEEeCC-----CeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcCC----CCEEEEEe
Q 022910 189 GHGSSVTCGDFTP---DGKTICTGSDD-----ATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISAD----STLALSGS 255 (290)
Q Consensus 189 ~~~~~i~~~~~~~---~~~~l~~~~~d-----g~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~ 255 (290)
.+..+..|+.|+| ...+|++|+.+ +.++||....+. +...+.....|..+|+.++|.|+ -.+||+++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence 3566788999998 35678888766 478888765443 44444444558999999999994 35899999
Q ss_pred CCCcEEEEEcCCC--------------------cEEEEEccCCCcEEEEEEecC
Q 022910 256 KDGSVHMVNITTG--------------------KVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 256 ~dg~i~~wd~~~~--------------------~~~~~~~~~~~~v~~i~~s~d 289 (290)
.|| |+||.++.. +.+..+..|++.|+.+.|+--
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt 299 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT 299 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee
Confidence 999 999998731 245667789999999999743
No 128
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.8e-26 Score=179.32 Aligned_cols=209 Identities=21% Similarity=0.362 Sum_probs=171.9
Q ss_pred cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCC-CCEEEEEeCCCcEEEEcCCCCc
Q 022910 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGN 140 (290)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~ 140 (290)
+|++.|.+|+|+..-.++||+|+.|.+|++||+.++++..++..|...|.++.|+|. ..+|++|+.|++|.+.|.+...
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~ 320 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS 320 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc
Confidence 799999999999988899999999999999999999999999999999999999985 5589999999999999998532
Q ss_pred eE-EEEecCCCCEEEEEEcCCC-CEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEE
Q 022910 141 LK-CTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLR 216 (290)
Q Consensus 141 ~~-~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~ 216 (290)
.. ..++ ..+.|-.++|.|.. ..+++++.||+++-+|+|+. +++.+++.|..+|.+|++++ ...++++++.++.|+
T Consensus 321 ~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk 399 (463)
T KOG0270|consen 321 NSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK 399 (463)
T ss_pred ccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence 22 2333 44569999999864 47888889999999999986 89999999999999999998 456788999999999
Q ss_pred EEcCCCCeeeEEEeCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcEEE
Q 022910 217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVVS 272 (290)
Q Consensus 217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~ 272 (290)
+|++...... ....+...-+...|+++.|+- -+|+.|+..+.+++||+.+...++
T Consensus 400 lw~~~~~~~~-~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 400 LWKFDVDSPK-SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred EEeecCCCCc-ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 9998755442 222222233446777888854 467778888889999998876554
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=2.4e-23 Score=170.07 Aligned_cols=225 Identities=14% Similarity=0.093 Sum_probs=171.3
Q ss_pred ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC-cEEEE
Q 022910 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG-LVQIW 134 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~ 134 (290)
....+..+.. +..++|+|++..++++++.++.+++||+.+.+.+..+.. ...+.+++|+|+++++++++.++ .+.+|
T Consensus 65 ~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~ 142 (300)
T TIGR03866 65 VIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFI 142 (300)
T ss_pred EEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEE
Confidence 3344444433 567899995555556667789999999998877776653 34468899999999999888765 46778
Q ss_pred cCCCCceEEEEecCCCCEEEEEEcCCCCEEEEe-eCCCeEEEEECCcccEEEeeecCC-------CCeEEEEEcCCCCEE
Q 022910 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG-SEDSTVWMWNADRAAYLNMFSGHG-------SSVTCGDFTPDGKTI 206 (290)
Q Consensus 135 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l 206 (290)
+..+++....+... ..+.+++|+|++.+|+++ ..++.|++||+++++.+..+..+. .....++|+|+++++
T Consensus 143 d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 143 DTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA 221 (300)
T ss_pred eCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence 99888776555433 346789999999988655 468999999999988776654221 123568899999986
Q ss_pred EE-EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEEEccCCCcEEEE
Q 022910 207 CT-GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVVSSLVSHTDSIECI 284 (290)
Q Consensus 207 ~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i 284 (290)
++ .+.++.|.+||+++++....+. +...+.+++|+|++++|+++ +.+|.|++||+.+++++..++.. ...++|
T Consensus 222 ~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~ 296 (300)
T TIGR03866 222 FVALGPANRVAVVDAKTYEVLDYLL----VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGV 296 (300)
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEE----eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-ccccee
Confidence 55 4556789999999887765554 34568899999999999886 45899999999999999999864 566999
Q ss_pred EEec
Q 022910 285 GFSR 288 (290)
Q Consensus 285 ~~s~ 288 (290)
+|+|
T Consensus 297 ~~~~ 300 (300)
T TIGR03866 297 VVRP 300 (300)
T ss_pred EeCC
Confidence 9986
No 130
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-24 Score=173.32 Aligned_cols=197 Identities=22% Similarity=0.374 Sum_probs=160.9
Q ss_pred EEEEECCC------CCcEEEEecCCCcEEEEEccCCe---------------------eeeeeccccCCEEEEEECCCC-
Q 022910 68 YSVACSPT------DATLVATGGGDDKGFFWRINQGD---------------------WASEIQGHKDSVSSLAFSMDG- 119 (290)
Q Consensus 68 ~~~~~~~~------~~~~l~~~~~dg~i~iw~~~~~~---------------------~~~~~~~~~~~i~~~~~~~~~- 119 (290)
.|++|... .++++|.|+.+..|.|||+.-.. .-....+|+..|..++|+..-
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 56677532 35799999999999999985210 001123688888899998754
Q ss_pred CEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCC-CCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEE
Q 022910 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD 198 (290)
Q Consensus 120 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 198 (290)
+.||+||.|.+|++||+.++++..++..|...|.++.|+|. ..+|++|+.|+++.+.|+|........-...+.|-.++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 47999999999999999999999999999999999999995 56899999999999999996433332223567899999
Q ss_pred EcC-CCCEEEEEeCCCeEEEEcCCCC-eeeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q 022910 199 FTP-DGKTICTGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 199 ~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~ 267 (290)
|.| ....++++..||+|+-+|+|+. +++.+++. |..+|.++++++ ...+|++++.|+.|++|++..
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A---Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA---HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCCCceeEEEe---ccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 999 4567788999999999999976 77888887 889999999998 456899999999999999864
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=4.6e-23 Score=168.41 Aligned_cols=232 Identities=17% Similarity=0.177 Sum_probs=174.4
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEE-eCCCcEE
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQ 132 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~ 132 (290)
.+.+..+.+|. .+.+++|+|++..++++++.++.|++|++.+++....+..+.. +..+.|+|+++.++++ +.++.|+
T Consensus 21 ~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~ 98 (300)
T TIGR03866 21 LEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVT 98 (300)
T ss_pred CceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEE
Confidence 34566666654 4678999995545557788899999999999888777765443 5678999999977655 5689999
Q ss_pred EEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCC-eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE-e
Q 022910 133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS-TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-S 210 (290)
Q Consensus 133 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~ 210 (290)
+||+.+.+.+..+... ..+.+++|+|++.+++++..++ .+.+||.++++....+.. ...+.+++|+|++++|+++ .
T Consensus 99 ~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 99 VIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC
Confidence 9999998877776533 3468899999999999988765 577889988876655432 3456789999999988655 4
Q ss_pred CCCeEEEEcCCCCeeeEEEeCCC--C--cccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEEEccCCCcEEEEE
Q 022910 211 DDATLRVWNPKSGENIHVIRGHP--Y--HTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVVSSLVSHTDSIECIG 285 (290)
Q Consensus 211 ~dg~i~i~d~~~~~~~~~~~~~~--~--~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~ 285 (290)
.++.|++||+.+++.+..+.... . .......++|+|++++++++ +.++.|.+||+.+++.+..+. +...+.+++
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~ 255 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLA 255 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEE
Confidence 68999999999988766554211 0 11124568899999986554 456789999999998877664 345799999
Q ss_pred EecCC
Q 022910 286 FSRSE 290 (290)
Q Consensus 286 ~s~d~ 290 (290)
|+|+|
T Consensus 256 ~~~~g 260 (300)
T TIGR03866 256 FTPDE 260 (300)
T ss_pred ECCCC
Confidence 99986
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.5e-24 Score=173.59 Aligned_cols=208 Identities=22% Similarity=0.362 Sum_probs=179.5
Q ss_pred EEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEc
Q 022910 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH 158 (290)
Q Consensus 79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 158 (290)
++++-.....+.+|.+...........-.++|.+++-+|.|.+|+.|+..|.|++|.+.+|.++..+..|..+|+|+.|+
T Consensus 53 llsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs 132 (476)
T KOG0646|consen 53 LLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS 132 (476)
T ss_pred eeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe
Confidence 34343445678999987765554444456889999999999999999899999999999999999999999999999999
Q ss_pred CCCCEEEEeeCCCeEEEEECC---------cccEEEeeecCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEcCCCCeeeE
Q 022910 159 PRGHIVLAGSEDSTVWMWNAD---------RAAYLNMFSGHGSSVTCGDFTPD--GKTICTGSDDATLRVWNPKSGENIH 227 (290)
Q Consensus 159 ~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~ 227 (290)
-++.+|++|+.||.|.+|.+. +.+++..+..|.-+|+.+...+. ..+|++++.|.++++||+..+..+.
T Consensus 133 ~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl 212 (476)
T KOG0646|consen 133 DDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL 212 (476)
T ss_pred CCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE
Confidence 999999999999999999874 24678889999999999998875 3689999999999999999999888
Q ss_pred EEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----------------cEEEEEccCCC--cEEEEEEecC
Q 022910 228 VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG----------------KVVSSLVSHTD--SIECIGFSRS 289 (290)
Q Consensus 228 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----------------~~~~~~~~~~~--~v~~i~~s~d 289 (290)
.+. ....+.+++.+|.++.+++|+.+|.|.+.++... ..+..+.+|.+ .|+|++.+-|
T Consensus 213 ti~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D 288 (476)
T KOG0646|consen 213 TIT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD 288 (476)
T ss_pred EEe----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC
Confidence 887 5788999999999999999999999999887432 35677889988 9999999987
Q ss_pred C
Q 022910 290 E 290 (290)
Q Consensus 290 ~ 290 (290)
|
T Consensus 289 g 289 (476)
T KOG0646|consen 289 G 289 (476)
T ss_pred c
Confidence 6
No 133
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=8e-25 Score=180.17 Aligned_cols=235 Identities=18% Similarity=0.284 Sum_probs=182.9
Q ss_pred CCCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCC--------
Q 022910 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-------- 120 (290)
Q Consensus 49 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------- 120 (290)
-.+.|..+...++||++.|.||...| .+..|++|+.||+|+||.+.+++++..+. ..+.|.|++|+|.+.
T Consensus 385 LrPFPt~~~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~ 462 (733)
T KOG0650|consen 385 LRPFPTRCALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV 462 (733)
T ss_pred cCCCcceeeeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe
Confidence 35567888999999999999999999 89999999999999999999999888775 445666666666544
Q ss_pred ------------------------------------------------------------------------EEEEEeC-
Q 022910 121 ------------------------------------------------------------------------LLASGGL- 127 (290)
Q Consensus 121 ------------------------------------------------------------------------~l~~~~~- 127 (290)
||++...
T Consensus 463 ~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~ 542 (733)
T KOG0650|consen 463 GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD 542 (733)
T ss_pred cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC
Confidence 2222211
Q ss_pred --CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCE
Q 022910 128 --DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT 205 (290)
Q Consensus 128 --dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 205 (290)
...|.|+++...+...-|+...+.+.++.|+|...+|++++. ..|+|||+..+..++.+......|..++.+|.|.-
T Consensus 543 ~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN 621 (733)
T ss_pred CCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe
Confidence 112222232222222223334567899999999999999887 78999999998888888878889999999999999
Q ss_pred EEEEeCCCeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-------C--cEEEEEc
Q 022910 206 ICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT-------G--KVVSSLV 275 (290)
Q Consensus 206 l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-------~--~~~~~~~ 275 (290)
|++|+.|+.+..||+.-.. +.+++.. |...+++++|++.-.++++|+.||++.|+.-.- . -++..+.
T Consensus 622 li~gs~d~k~~WfDldlsskPyk~lr~---H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~ 698 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSSKPYKTLRL---HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR 698 (733)
T ss_pred EEEecCCCeeEEEEcccCcchhHHhhh---hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence 9999999999999997554 3344443 889999999999999999999999999986431 1 2567788
Q ss_pred cCCCc----EEEEEEecC
Q 022910 276 SHTDS----IECIGFSRS 289 (290)
Q Consensus 276 ~~~~~----v~~i~~s~d 289 (290)
+|... |....|||.
T Consensus 699 gH~~~~~~gVLd~~wHP~ 716 (733)
T KOG0650|consen 699 GHEKTNDLGVLDTIWHPR 716 (733)
T ss_pred CceeecccceEeecccCC
Confidence 88654 999999985
No 134
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=8.8e-25 Score=181.03 Aligned_cols=232 Identities=17% Similarity=0.248 Sum_probs=179.4
Q ss_pred ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee--eccccCCEEEEEECCCCC-EEEEEeCCCcEE
Q 022910 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQ 132 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~ 132 (290)
.++.+..|.+.|..+.|-| +..+|++++.|.++++||+++.+++.. +.+|.+.|.+++|.|... .|++|+.||.|.
T Consensus 92 ~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il 170 (720)
T KOG0321|consen 92 QLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL 170 (720)
T ss_pred hhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEE
Confidence 3567788999999999999 999999999999999999999988776 889999999999999655 799999999999
Q ss_pred EEcCCCCc--------------------e-------EEEEecCCCCEEE---EEEcCCCCEEEEeeC-CCeEEEEECCcc
Q 022910 133 IWDPSSGN--------------------L-------KCTLEGPGGGVEW---VSWHPRGHIVLAGSE-DSTVWMWNADRA 181 (290)
Q Consensus 133 i~d~~~~~--------------------~-------~~~~~~~~~~i~~---i~~~~~~~~l~~~~~-dg~i~i~d~~~~ 181 (290)
|||++-.. + +...+.+...|.+ +.+..|...||+++. |+.|++||+++.
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence 99986321 0 1112233444555 555668888998887 999999999986
Q ss_pred cEEEee--------ecC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee--eEEEeCCCCcccCeEEEEEcCCC
Q 022910 182 AYLNMF--------SGH---GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADS 248 (290)
Q Consensus 182 ~~~~~~--------~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~ 248 (290)
...... ..+ ...+.++.....|.+|++.+.|+.|++|++.+... +..+.+.... ..-..-..+|++
T Consensus 251 ~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~-sf~vks~lSpd~ 329 (720)
T KOG0321|consen 251 YTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNS-SFYVKSELSPDD 329 (720)
T ss_pred ccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccc-eeeeeeecCCCC
Confidence 543222 122 34577888888899999999999999999986532 3333332211 122233568999
Q ss_pred CEEEEEeCCCcEEEEEcCCCc-EEEEEccCCCcEEEEEEecC
Q 022910 249 TLALSGSKDGSVHMVNITTGK-VVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 249 ~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~i~~s~d 289 (290)
.+|++|+.|...++|.+.+.. ....+.+|.-.|++++|.|.
T Consensus 330 ~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 330 CSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred ceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 999999999999999998765 45667799999999999885
No 135
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.93 E-value=3.3e-24 Score=168.50 Aligned_cols=214 Identities=22% Similarity=0.380 Sum_probs=175.9
Q ss_pred CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC-------eeeeeeccccCCEEEEEECCCC-CEEEEEe
Q 022910 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMDG-QLLASGG 126 (290)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~ 126 (290)
...-.+.||+++|..++|+|.+...||+|+.|.+|.||.+..+ +.+..+.+|...|.-++|+|.. +.|++++
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 3455678999999999999999999999999999999999764 3566788999999999999964 5789999
Q ss_pred CCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCC-CeEEEEEcCCCCE
Q 022910 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-SVTCGDFTPDGKT 205 (290)
Q Consensus 127 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~ 205 (290)
.|.+|.+|++.+++.+.++. |...|.++.|+.+|.+|++++.|..|+|||.++++.+..-.+|.+ ....+.|..++.+
T Consensus 152 ~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i 230 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKI 230 (472)
T ss_pred CCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCce
Confidence 99999999999999888888 999999999999999999999999999999999999988776654 3455567778885
Q ss_pred EEEEe---CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCcE
Q 022910 206 ICTGS---DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS-GSKDGSVHMVNITTGKV 270 (290)
Q Consensus 206 l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~wd~~~~~~ 270 (290)
+.+|. .+.++-+||..+......+.... ..++|----|.++.++++. |-.|+.||.|.+....+
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 55553 47789999988765543333222 4566777778888776655 55699999999987663
No 136
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.9e-25 Score=172.64 Aligned_cols=213 Identities=23% Similarity=0.362 Sum_probs=172.6
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC------------------------------------
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------------------------------------ 96 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------------------------------------ 96 (290)
...+...+..|.+.|..|++.. ..+++++.|.+|+.|.+..
T Consensus 98 qR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~ 174 (433)
T KOG0268|consen 98 QRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDE 174 (433)
T ss_pred hhhhhheeecccCceeeEEecc---cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeeccc
Confidence 4667899999999999999986 4566888889888887432
Q ss_pred --CeeeeeeccccCCEEEEEECCCCC-EEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeE
Q 022910 97 --GDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTV 173 (290)
Q Consensus 97 --~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i 173 (290)
..++..+.-....|.++.|+|... .|++|+.|+.|.+||++++.+++.+.. ...-+.|+|+|.+-.|++|+.|..+
T Consensus 175 ~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nl 253 (433)
T KOG0268|consen 175 QRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNL 253 (433)
T ss_pred ccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccc
Confidence 112223333345678888888655 677777999999999999998876653 3346789999988899999999999
Q ss_pred EEEECCcc-cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEE
Q 022910 174 WMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (290)
Q Consensus 174 ~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 252 (290)
+.||++.. .++....+|.+.|..++|+|.|+-|++|+.|.+|+||..+.+.....+... ....|.++.|+-|.+|++
T Consensus 254 Y~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk--RMq~V~~Vk~S~Dskyi~ 331 (433)
T KOG0268|consen 254 YTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK--RMQHVFCVKYSMDSKYII 331 (433)
T ss_pred eehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh--hhheeeEEEEeccccEEE
Confidence 99999875 577888899999999999999999999999999999999887664444322 456799999999999999
Q ss_pred EEeCCCcEEEEEcCCCcEE
Q 022910 253 SGSKDGSVHMVNITTGKVV 271 (290)
Q Consensus 253 ~~~~dg~i~~wd~~~~~~~ 271 (290)
+|+.|+.|++|..+..+.+
T Consensus 332 SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 332 SGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred ecCCCcceeeeecchhhhc
Confidence 9999999999997655433
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=4e-25 Score=178.67 Aligned_cols=219 Identities=18% Similarity=0.269 Sum_probs=187.6
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeee--eeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA--SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL 141 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 141 (290)
..-|.++.+.| +++-|++|+.-.++.|||+...... ..+....-...+++.+||.+..+++..||.|.|||+.+...
T Consensus 465 dnyiRSckL~p-dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 465 DNYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred ccceeeeEecC-CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 45688889999 7777789999999999999875443 33443345678899999999999999999999999999999
Q ss_pred EEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCC
Q 022910 142 KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221 (290)
Q Consensus 142 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 221 (290)
+..|++|...+.||.++++|..|.+|+-|.+|+.||+++++.+.... ..+.|.++-++|.+.+|++|-..+.+.|....
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC
Confidence 99999999999999999999999999999999999999998766554 56889999999999999999999999888776
Q ss_pred CCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910 222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d 289 (290)
..++ ..+.. |.+.|-++.|.+.|+++++.+.|..+..|.+.-|..+...+. ..+|.+...|-|
T Consensus 623 kp~k-yqlhl---heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~d 685 (705)
T KOG0639|consen 623 KPEK-YQLHL---HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFD 685 (705)
T ss_pred Cccc-eeecc---cccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccC
Confidence 5443 33333 889999999999999999999999999999999988877765 567887777655
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.6e-24 Score=170.66 Aligned_cols=230 Identities=18% Similarity=0.317 Sum_probs=186.9
Q ss_pred eccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeee--eecccc-CCEEEEEECCCCCEEEEEeCCCcEEEEcC
Q 022910 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS--EIQGHK-DSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (290)
Q Consensus 60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 136 (290)
+.--..+|.+.+|.|++...+++++....++.||+.+.+... .+.++. ..+.....+|++++|+..+..|.|.+...
T Consensus 253 ~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLha 332 (514)
T KOG2055|consen 253 IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHA 332 (514)
T ss_pred eeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehh
Confidence 333456899999999666689999999999999998876443 333333 45677888999999999999999999999
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCC-CeEEEEEcCCCCEEEEEeCCCeE
Q 022910 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-SVTCGDFTPDGKTICTGSDDATL 215 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i 215 (290)
.+++.+..++. .+.|..++|+.+++.|++++.+|.|++||+++..+++++....+ .-++++.++++.+||+|+..|.|
T Consensus 333 kT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiV 411 (514)
T KOG2055|consen 333 KTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIV 411 (514)
T ss_pred hhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceE
Confidence 99999999984 45699999999999999999999999999999999998874322 33677888999999999999999
Q ss_pred EEEcCCCC---eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCcEEEEEccCC---CcEEEEEEe
Q 022910 216 RVWNPKSG---ENIHVIRGHPYHTEGLTCLTISADSTLALSGSK--DGSVHMVNITTGKVVSSLVSHT---DSIECIGFS 287 (290)
Q Consensus 216 ~i~d~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~---~~v~~i~~s 287 (290)
.|||..+. ...+.+.........|++|+|+|+.++||.++. ...+++..+.+......++..+ +.|+|++||
T Consensus 412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS 491 (514)
T ss_pred EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec
Confidence 99996532 222233332236678999999999999988876 5689999999988888887544 478999999
Q ss_pred cCC
Q 022910 288 RSE 290 (290)
Q Consensus 288 ~d~ 290 (290)
|.|
T Consensus 492 P~s 494 (514)
T KOG2055|consen 492 PNS 494 (514)
T ss_pred CCC
Confidence 964
No 139
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=6.5e-24 Score=180.70 Aligned_cols=198 Identities=22% Similarity=0.329 Sum_probs=181.8
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee---ccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI---QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN 140 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 140 (290)
...+++++.++ .|++.+.|+..|.|-+|++++|....++ +.|.++|+.++...-++.+++++.+|.+.+|+..+..
T Consensus 448 ~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 448 DINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred CcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence 36789999999 8888999999999999999999988888 5899999999998888899999999999999999988
Q ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC
Q 022910 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (290)
Q Consensus 141 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 220 (290)
++..+.. ...+.++.++.....++++..+-.|+++|..+.+.++.+.+|+..|+.++|||+|++|++++.|++|++||+
T Consensus 527 l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 527 LKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred eeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 8777774 446899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-CcEEEEEcCC
Q 022910 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-GSVHMVNITT 267 (290)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~~wd~~~ 267 (290)
.++.++-.+. ...+.+++.|+|+|.+|||...| .-|++|--++
T Consensus 606 pt~~lID~~~----vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 606 PTGTLIDGLL----VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred cCcceeeeEe----cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 9999988887 57889999999999999999988 6799997544
No 140
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.7e-24 Score=190.03 Aligned_cols=222 Identities=22% Similarity=0.366 Sum_probs=180.5
Q ss_pred cCEEEEEECCCCCc---EEEEecCCCcEEEEEccCC------eeeeeeccccCCEEEEEECCCCC-EEEEEeCCCcEEEE
Q 022910 65 DEVYSVACSPTDAT---LVATGGGDDKGFFWRINQG------DWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIW 134 (290)
Q Consensus 65 ~~v~~~~~~~~~~~---~l~~~~~dg~i~iw~~~~~------~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~ 134 (290)
..-+.|+|.+.+.. +||.|..||.|.+|+...- ..+.+...|.+.|..+.|++... +||+|+.+|.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45678999985544 6999999999999998762 24556678999999999999655 99999999999999
Q ss_pred cCCCCceEEEEe--cCCCCEEEEEEcCC-CCEEEEeeCCCeEEEEECCcccEEEeeecCCC--CeEEEEEcCCC-CEEEE
Q 022910 135 DPSSGNLKCTLE--GPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS--SVTCGDFTPDG-KTICT 208 (290)
Q Consensus 135 d~~~~~~~~~~~--~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~~l~~ 208 (290)
|+.+.+.-..+. .....|.+++|+.. ...|++++.+|.+.|||++..+.+-.+..+.. .+..++|+|+. ..|++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 998765444432 24567999999874 45788899999999999999988877765544 57899999965 45666
Q ss_pred EeCCC---eEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEE
Q 022910 209 GSDDA---TLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIEC 283 (290)
Q Consensus 209 ~~~dg---~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 283 (290)
++.|. .|.+||+|.-. +++.+.+ |..+|.++.|++ |..+|++++.|++|.+|+.++++.+..+....++++.
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~---H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEG---HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD 301 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcc---cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence 66543 69999998644 3344444 899999999999 4589999999999999999999999999998899999
Q ss_pred EEEecC
Q 022910 284 IGFSRS 289 (290)
Q Consensus 284 i~~s~d 289 (290)
+.|+|.
T Consensus 302 v~w~pr 307 (1049)
T KOG0307|consen 302 VQWCPR 307 (1049)
T ss_pred eeecCC
Confidence 999985
No 141
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=2.3e-23 Score=160.04 Aligned_cols=222 Identities=23% Similarity=0.407 Sum_probs=177.5
Q ss_pred cCEEEEEEC-------CCCCcEEEEecCCCcEEEEEccCCeeeeeecc--ccC---CEEEEEECCCCCEEEEEeCCCcEE
Q 022910 65 DEVYSVACS-------PTDATLVATGGGDDKGFFWRINQGDWASEIQG--HKD---SVSSLAFSMDGQLLASGGLDGLVQ 132 (290)
Q Consensus 65 ~~v~~~~~~-------~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~---~i~~~~~~~~~~~l~~~~~dg~i~ 132 (290)
..|+..+|- | +..++|+.+.+.-|++||.-+++....+.+ |.. ...+++|+|+|.+|++|. ...|+
T Consensus 105 ~tvydy~wYs~M~s~qP-~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcir 182 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQP-STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIR 182 (406)
T ss_pred CEEEEEEeeeccccCCC-ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence 457777775 4 667999999999999999999998877653 332 457899999999999876 67899
Q ss_pred EEcC-CCCceEE--EE-----ecCCCCEEEEEEcCC-CCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCC
Q 022910 133 IWDP-SSGNLKC--TL-----EGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203 (290)
Q Consensus 133 i~d~-~~~~~~~--~~-----~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 203 (290)
++|+ +.|.-.. .. .+..+-|.+++|+|. ...+++|+....+-||.-..+.++..+.+|.+.|+.++|.++|
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc
Confidence 9999 4443221 11 123567899999995 4599999999999999988999999999999999999999999
Q ss_pred CEEEEEeC-CCeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CcEEEEEccCCCc
Q 022910 204 KTICTGSD-DATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT-GKVVSSLVSHTDS 280 (290)
Q Consensus 204 ~~l~~~~~-dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~ 280 (290)
+.|++|+. +-.|..||+|... ++..+..+......-.-....|++++|++|+.+|.|++||++. +..+..+..|...
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~ 342 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDT 342 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccc
Confidence 99999875 6789999998643 4455555332223333445568999999999999999999998 7778888889999
Q ss_pred EEEEEEec
Q 022910 281 IECIGFSR 288 (290)
Q Consensus 281 v~~i~~s~ 288 (290)
|+.++++|
T Consensus 343 vNgvslnP 350 (406)
T KOG2919|consen 343 VNGVSLNP 350 (406)
T ss_pred ccceecCc
Confidence 99999988
No 142
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=6.9e-22 Score=160.06 Aligned_cols=216 Identities=22% Similarity=0.388 Sum_probs=172.9
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc---
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN--- 140 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--- 140 (290)
++-|.|++|.+ ++. ++||..+|.|.||+..+.+..+....|.+.|.+++...+|.+| +|+.|..|..||-.-.+
T Consensus 246 kk~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~ 322 (626)
T KOG2106|consen 246 KKFVLCVTFLE-NGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRE 322 (626)
T ss_pred ceEEEEEEEcC-CCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEecccccccccc
Confidence 35799999999 554 5599999999999998888888777999999999999888755 59999999999832000
Q ss_pred -------------------------------------eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE
Q 022910 141 -------------------------------------LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY 183 (290)
Q Consensus 141 -------------------------------------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 183 (290)
......+|......++.+|..+.+++++.|+.+++|+ ..++
T Consensus 323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~ 400 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL 400 (626)
T ss_pred ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce
Confidence 0012345667788999999999999999999999999 3444
Q ss_pred EEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 022910 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV 263 (290)
Q Consensus 184 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 263 (290)
..... ...++.|+.|+|.| .+++|+..|...+.|..+...+. +.. ...++++++|+|+|.+||.|+.|+.|++|
T Consensus 401 ~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-~~~---d~~~ls~v~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 401 EWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-IHT---DNEQLSVVRYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred eEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-EEe---cCCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence 43332 45788999999999 99999999999999998855443 333 47899999999999999999999999999
Q ss_pred EcCCC-cEEEEEc-cCCCcEEEEEEecCC
Q 022910 264 NITTG-KVVSSLV-SHTDSIECIGFSRSE 290 (290)
Q Consensus 264 d~~~~-~~~~~~~-~~~~~v~~i~~s~d~ 290 (290)
.+... ....... .+..+|+.+.||+|+
T Consensus 475 ~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds 503 (626)
T KOG2106|consen 475 RVSANGRKYSRVGKCSGSPITHLDWSSDS 503 (626)
T ss_pred EECCCCcEEEEeeeecCceeEEeeecCCC
Confidence 98653 3333332 244899999999985
No 143
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.92 E-value=4.5e-24 Score=177.17 Aligned_cols=127 Identities=22% Similarity=0.378 Sum_probs=108.8
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee--e----eeeccccCCEEEEEECCCCCEEEEEeC
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--A----SEIQGHKDSVSSLAFSMDGQLLASGGL 127 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~----~~~~~~~~~i~~~~~~~~~~~l~~~~~ 127 (290)
...+..+.+|.+.|+.+.|+|....+||+|+.|..|+||.+..+-. + ..+.+..-.+-++.|+|...-|+..+.
T Consensus 69 ~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a 148 (1012)
T KOG1445|consen 69 TRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA 148 (1012)
T ss_pred ccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc
Confidence 4467788999999999999998889999999999999999985421 1 123334457889999997765666666
Q ss_pred CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCc
Q 022910 128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180 (290)
Q Consensus 128 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~ 180 (290)
.|+++|||+.+++.+..+.+|...|.++.|+.+|.+|++++.|..|+|||-+.
T Consensus 149 ~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 149 HGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred CceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 89999999999999999999999999999999999999999999999999764
No 144
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=7.2e-23 Score=155.83 Aligned_cols=193 Identities=22% Similarity=0.335 Sum_probs=153.6
Q ss_pred eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCC--EEEEEeCCCcEEEEc
Q 022910 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ--LLASGGLDGLVQIWD 135 (290)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d 135 (290)
+....|.++|.+++|+. ++..+++|+.|+.+++||+.+++ +..+..|.++|.++.|-+... .|++||.|.+|++||
T Consensus 66 ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred hhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence 55667999999999998 77889999999999999999995 555677999999999977555 899999999999999
Q ss_pred CCCCceEEEEecC-----------------------------------------CCCEEEEEEcCCCCEEEEeeCCCeEE
Q 022910 136 PSSGNLKCTLEGP-----------------------------------------GGGVEWVSWHPRGHIVLAGSEDSTVW 174 (290)
Q Consensus 136 ~~~~~~~~~~~~~-----------------------------------------~~~i~~i~~~~~~~~l~~~~~dg~i~ 174 (290)
.+...++.++..+ .-.++|++..++....+.|+-.|.+.
T Consensus 144 ~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 144 TRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA 223 (347)
T ss_pred cCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence 9876655443211 12457777777777778888888888
Q ss_pred EEECCcc--cEEEeeecCC---------CCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEE
Q 022910 175 MWNADRA--AYLNMFSGHG---------SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT 243 (290)
Q Consensus 175 i~d~~~~--~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~ 243 (290)
+..+..+ +.-..++.|. ..|.+|+|+|.-..|++++.||++.+||-....++..... +..+|++.+
T Consensus 224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~---~~qpItcc~ 300 (347)
T KOG0647|consen 224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET---HPQPITCCS 300 (347)
T ss_pred EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc---CCCccceeE
Confidence 8877765 2223344443 2578899999889999999999999999877666555554 889999999
Q ss_pred EcCCCCEEEEEe
Q 022910 244 ISADSTLALSGS 255 (290)
Q Consensus 244 ~~~~~~~l~~~~ 255 (290)
|+.+|.+++-+.
T Consensus 301 fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 301 FNRNGSIFAYAL 312 (347)
T ss_pred ecCCCCEEEEEe
Confidence 999999887653
No 145
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.2e-23 Score=170.58 Aligned_cols=221 Identities=22% Similarity=0.377 Sum_probs=185.9
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC--------CeeeeeeccccCCEEEEEECCCCCEEEEE
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--------GDWASEIQGHKDSVSSLAFSMDGQLLASG 125 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 125 (290)
..+..+++.|.+.|+.++|+| ....|++++.+|++++|+++. -+++.++.+|.++|.|+++.+++.++++|
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred cceeeeeecchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence 455668999999999999999 777888999999999999932 24677889999999999999999999999
Q ss_pred eCCCcEEEEcCCCC----------ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE--E---------
Q 022910 126 GLDGLVQIWDPSSG----------NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--L--------- 184 (290)
Q Consensus 126 ~~dg~i~i~d~~~~----------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~--------- 184 (290)
+.||+|+.|++... .....+.+|...++.+++|+....|++++.||+++.|......+ .
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~P 442 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYP 442 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCc
Confidence 99999999976522 23456788999999999999999999999999999998754332 0
Q ss_pred ---------------------------------Eeee-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe
Q 022910 185 ---------------------------------NMFS-------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224 (290)
Q Consensus 185 ---------------------------------~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 224 (290)
..+. .....+..+.++|...+.+++..|+.|+++|..++.
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 0000 011346677888988999999999999999999999
Q ss_pred eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC
Q 022910 225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278 (290)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 278 (290)
.+..... |...++++++.|+|.+|++++.|+.+++|.+....++.....|.
T Consensus 523 ~l~s~~a---~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 523 ILHSMVA---HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred cchheee---ccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 8887776 78899999999999999999999999999998888877776664
No 146
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=7.6e-23 Score=155.41 Aligned_cols=167 Identities=28% Similarity=0.426 Sum_probs=145.7
Q ss_pred eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCC---CCEEEEEeCCCcEEEE
Q 022910 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD---GQLLASGGLDGLVQIW 134 (290)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~ 134 (290)
..-.+|+-.|..+.|-|.+.-+|.+++.|.++++||.++.+....++ ..+.|++-+++|- ..++|+|..+-.|++.
T Consensus 95 ~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLC 173 (397)
T KOG4283|consen 95 QHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLC 173 (397)
T ss_pred cCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence 34467999999999999988899999999999999999998888877 6678999999884 3478899999999999
Q ss_pred cCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcc-cEEEe--------------eecCCCCeEEEE
Q 022910 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRA-AYLNM--------------FSGHGSSVTCGD 198 (290)
Q Consensus 135 d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~--------------~~~~~~~i~~~~ 198 (290)
|+.+|...+++.+|...|.++.|+|... .|++|+.||.|++||++.. -+... -..|.+.+..++
T Consensus 174 Di~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla 253 (397)
T KOG4283|consen 174 DIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA 253 (397)
T ss_pred eccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence 9999999999999999999999999776 6788999999999999864 22222 235778899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEcCCCCee
Q 022910 199 FTPDGKTICTGSDDATLRVWNPKSGEN 225 (290)
Q Consensus 199 ~~~~~~~l~~~~~dg~i~i~d~~~~~~ 225 (290)
|..++.++++++.|..+++|+..+|..
T Consensus 254 ~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 254 WTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ecccchhhhhccCccceEEeecccCcc
Confidence 999999999999999999999987754
No 147
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-21 Score=163.73 Aligned_cols=230 Identities=19% Similarity=0.285 Sum_probs=189.1
Q ss_pred CCCceeeeccCC-cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910 53 PDDSTHIFSGHS-DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (290)
Q Consensus 53 ~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (290)
..-....+.|+. ..|-+++|.+ +++++ +.+.+|.|.-||+.+++.+..+....+.|++++.+|.+..++.|+.||.+
T Consensus 57 ~w~~~~vi~g~~drsIE~L~W~e-~~RLF-S~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl 134 (691)
T KOG2048|consen 57 NWFLEPVIHGPEDRSIESLAWAE-GGRLF-SSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVL 134 (691)
T ss_pred CceeeEEEecCCCCceeeEEEcc-CCeEE-eecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceE
Confidence 344556666664 5799999997 66555 77789999999999999999999999999999999999999999999988
Q ss_pred EEEcCCCCceEE--EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee--------cCCCCeEEEEEcC
Q 022910 132 QIWDPSSGNLKC--TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS--------GHGSSVTCGDFTP 201 (290)
Q Consensus 132 ~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~~~ 201 (290)
.+++...++... .+....+.+.++.|+|++..+++|+.||.|++||..++..+.... ....-|+++.|..
T Consensus 135 ~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr 214 (691)
T KOG2048|consen 135 YDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR 214 (691)
T ss_pred EEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee
Confidence 888888777654 344456889999999999999999999999999999987666221 1233567787774
Q ss_pred CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE----EEEEccC
Q 022910 202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV----VSSLVSH 277 (290)
Q Consensus 202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~ 277 (290)
+ ..|++|...|+|.+||...+..++.+.. |...|.+++..+++.++++++.|+.|..|...+.+. ......|
T Consensus 215 d-~tI~sgDS~G~V~FWd~~~gTLiqS~~~---h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h 290 (691)
T KOG2048|consen 215 D-STIASGDSAGTVTFWDSIFGTLIQSHSC---HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH 290 (691)
T ss_pred c-CcEEEecCCceEEEEcccCcchhhhhhh---hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCC
Confidence 4 5799999999999999999988877776 888999999999999999999999999998876643 2233467
Q ss_pred CCcEEEEEEec
Q 022910 278 TDSIECIGFSR 288 (290)
Q Consensus 278 ~~~v~~i~~s~ 288 (290)
...|++++..+
T Consensus 291 ~hdvrs~av~~ 301 (691)
T KOG2048|consen 291 AHDVRSMAVIE 301 (691)
T ss_pred cccceeeeeec
Confidence 77888887654
No 148
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=9.7e-22 Score=150.14 Aligned_cols=225 Identities=17% Similarity=0.272 Sum_probs=171.1
Q ss_pred CCCCCceeeeccCCcCEEEEEECC-CCCcEEEEecCCCcEEEEEccC---------CeeeeeeccccCCEEEEEECCC--
Q 022910 51 EQPDDSTHIFSGHSDEVYSVACSP-TDATLVATGGGDDKGFFWRINQ---------GDWASEIQGHKDSVSSLAFSMD-- 118 (290)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~~~~~i~~~~~~~~-- 118 (290)
..........+.|.+.|..+.|.+ .-|+.+|+++.|+++.||.-.. .....++......|+.++|.|.
T Consensus 46 s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl 125 (361)
T KOG2445|consen 46 SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHL 125 (361)
T ss_pred CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhc
Confidence 344667788899999999999964 5678999999999999998621 1233456667789999999984
Q ss_pred CCEEEEEeCCCcEEEEcCCCCc------eEEEEe-------cCCCCEEEEEEcCC---CCEEEEeeCC-----CeEEEEE
Q 022910 119 GQLLASGGLDGLVQIWDPSSGN------LKCTLE-------GPGGGVEWVSWHPR---GHIVLAGSED-----STVWMWN 177 (290)
Q Consensus 119 ~~~l~~~~~dg~i~i~d~~~~~------~~~~~~-------~~~~~i~~i~~~~~---~~~l~~~~~d-----g~i~i~d 177 (290)
|-.||+++.||.||||+....- +...++ .+..+..|+.|+|. ..+||+|+.+ +.++||.
T Consensus 126 GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye 205 (361)
T KOG2445|consen 126 GLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE 205 (361)
T ss_pred ceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEE
Confidence 5689999999999999875432 222222 35567889999973 4588888875 4788886
Q ss_pred CCcc----cEEEeeecCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEcCCCC-----------------eeeEEEeCC
Q 022910 178 ADRA----AYLNMFSGHGSSVTCGDFTPD----GKTICTGSDDATLRVWNPKSG-----------------ENIHVIRGH 232 (290)
Q Consensus 178 ~~~~----~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~-----------------~~~~~~~~~ 232 (290)
.... ..+..+..|..+|+.|+|.|+ -.+|++++.|| |+||.++.. -.+..+..+
T Consensus 206 ~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~ 284 (361)
T KOG2445|consen 206 YNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL 284 (361)
T ss_pred ecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec
Confidence 5433 345667789999999999994 24689999999 999998731 123444555
Q ss_pred CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC---CcEEEEEcc
Q 022910 233 PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT---GKVVSSLVS 276 (290)
Q Consensus 233 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~---~~~~~~~~~ 276 (290)
..|.+.|..+.|+-.|..|++.+.||.||+|...- .+++..+..
T Consensus 285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKA 331 (361)
T ss_pred cCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEec
Confidence 56999999999999999999999999999998642 345555543
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=1.5e-22 Score=161.86 Aligned_cols=236 Identities=19% Similarity=0.206 Sum_probs=183.6
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec--cccCCEEEEEECCCCCEEEEEeCCCc
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLDGL 130 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~ 130 (290)
....+..+..|..+|.+|.|+|.+...+++.+.||+|++-|++.+.....+. .....+..+.|+.+...++.+..=|.
T Consensus 223 d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~ 302 (498)
T KOG4328|consen 223 DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGN 302 (498)
T ss_pred ccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccc
Confidence 3556788899999999999999988999999999999999998865433333 24556778888888888888887789
Q ss_pred EEEEcCCCCce-EEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccE----EEeeecCCCCeEEEEEcCCCC
Q 022910 131 VQIWDPSSGNL-KCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAY----LNMFSGHGSSVTCGDFTPDGK 204 (290)
Q Consensus 131 i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~ 204 (290)
+.+||++++.. ...+..|...|+.|+++|... +||+++.|++.+|||+|.... +.....|...|.+..|||.+.
T Consensus 303 f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g 382 (498)
T KOG4328|consen 303 FNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG 382 (498)
T ss_pred eEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC
Confidence 99999998765 555667888999999999654 789999999999999987532 223345899999999999887
Q ss_pred EEEEEeCCCeEEEEcCC----CCeeeEEEeCCCCcccC--eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC
Q 022910 205 TICTGSDDATLRVWNPK----SGENIHVIRGHPYHTEG--LTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278 (290)
Q Consensus 205 ~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 278 (290)
.|++.+.|..|+|||.. ...+...+.....+... .....|.|+..++++|..-..|-|+|-..++.+..+....
T Consensus 383 tl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~ 462 (498)
T KOG4328|consen 383 TLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE 462 (498)
T ss_pred ceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc
Confidence 79999999999999983 33344444422112122 3356899999999999999999999998888788765443
Q ss_pred C-cEEEE-EEec
Q 022910 279 D-SIECI-GFSR 288 (290)
Q Consensus 279 ~-~v~~i-~~s~ 288 (290)
. .|.++ .|+|
T Consensus 463 ~~tI~~vn~~HP 474 (498)
T KOG4328|consen 463 SSTIPSVNEFHP 474 (498)
T ss_pred ccccccceeecc
Confidence 3 45443 5666
No 150
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=6.4e-21 Score=154.49 Aligned_cols=218 Identities=18% Similarity=0.373 Sum_probs=178.5
Q ss_pred cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee---cc-ccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC
Q 022910 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI---QG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (290)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 137 (290)
..+..|....|+|.+.+++++++. |.+.+|+++.+...++. .. ....|.|++|.++|+ +++|..+|.|.||+..
T Consensus 198 ~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 198 TSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG 275 (626)
T ss_pred eccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC
Confidence 345678899999999999999875 88999999987665543 22 236799999999887 7889999999999998
Q ss_pred CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc-----------E-----------------------
Q 022910 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-----------Y----------------------- 183 (290)
Q Consensus 138 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~----------------------- 183 (290)
+.+..+....|.+.|.+++.-.+|.+|- |+.|..|..||-.-.+ .
T Consensus 276 ~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~G 354 (626)
T KOG2106|consen 276 TNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQG 354 (626)
T ss_pred CceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEe
Confidence 8888777779999999999998887655 9999999999832110 0
Q ss_pred ------EEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC
Q 022910 184 ------LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD 257 (290)
Q Consensus 184 ------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 257 (290)
.....+|......++.+|..+.+++++.|+.+++|+ ..++..... ...++.++.|+|.| .++.|+..
T Consensus 355 t~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~----~~d~~~~~~fhpsg-~va~Gt~~ 427 (626)
T KOG2106|consen 355 TLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI----IEDPAECADFHPSG-VVAVGTAT 427 (626)
T ss_pred eecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE----ecCceeEeeccCcc-eEEEeecc
Confidence 012235777889999999999999999999999999 445555554 46788999999999 99999999
Q ss_pred CcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 258 g~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
|...+.|..+...+..-.. +.+++.++|+|+|
T Consensus 428 G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G 459 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDG 459 (626)
T ss_pred ceEEEEecccceeEEEEec-CCceEEEEEcCCC
Confidence 9999999999666665555 8899999999997
No 151
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=1.2e-22 Score=170.82 Aligned_cols=211 Identities=19% Similarity=0.305 Sum_probs=179.7
Q ss_pred CCceeeeccCCcCEEEEEECCC--CCcEEEEecCCCcEEEEEccCC-eeeeeeccccCCEEEEEECCCC--CEEEEEeCC
Q 022910 54 DDSTHIFSGHSDEVYSVACSPT--DATLVATGGGDDKGFFWRINQG-DWASEIQGHKDSVSSLAFSMDG--QLLASGGLD 128 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d 128 (290)
......+..|...|.|+.|+.. ..++||+++.|+.|.|||+... .++.++.+|...|+++.|.-+| ..+++++.|
T Consensus 491 l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGAD 570 (1080)
T KOG1408|consen 491 LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGAD 570 (1080)
T ss_pred hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCc
Confidence 4456677789999999999853 4579999999999999999764 4667889999999999998766 589999999
Q ss_pred CcEEEEcCCCCceEEEEec-----CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec---CCCCeEEEEEc
Q 022910 129 GLVQIWDPSSGNLKCTLEG-----PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG---HGSSVTCGDFT 200 (290)
Q Consensus 129 g~i~i~d~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~ 200 (290)
..|.+--.....-...+.. ....+..|+..|..+++++++.|..|+||++..++..+.|++ |.+....+...
T Consensus 571 ksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lD 650 (1080)
T KOG1408|consen 571 KSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILD 650 (1080)
T ss_pred hhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEEC
Confidence 9887654442222222222 234689999999999999999999999999999999999876 55667788999
Q ss_pred CCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 201 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 267 (290)
|.|.|+++.+.|.+|.+||..+++++..+.+ |...|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus 651 PSgiY~atScsdktl~~~Df~sgEcvA~m~G---HsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 651 PSGIYLATSCSDKTLCFVDFVSGECVAQMTG---HSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CCccEEEEeecCCceEEEEeccchhhhhhcC---cchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999999999999999999999999998888 889999999999999999999999999999854
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.4e-23 Score=182.85 Aligned_cols=215 Identities=20% Similarity=0.383 Sum_probs=179.4
Q ss_pred CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec--cccCCEEEEEECCCCC-EEEEEeCC
Q 022910 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQ-LLASGGLD 128 (290)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~-~l~~~~~d 128 (290)
.....+..+..|+++|..+.|++..+++||+|+.+|.|.|||+++.+...... .....|.+++|+..-. .|++++.+
T Consensus 104 ~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s 183 (1049)
T KOG0307|consen 104 ASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS 183 (1049)
T ss_pred cchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCC
Confidence 34556778889999999999999888899999999999999999865554442 2457899999986544 68888999
Q ss_pred CcEEEEcCCCCceEEEEecCCC--CEEEEEEcCCCC-EEEEeeCCC---eEEEEECCcc-cEEEeeecCCCCeEEEEEcC
Q 022910 129 GLVQIWDPSSGNLKCTLEGPGG--GVEWVSWHPRGH-IVLAGSEDS---TVWMWNADRA-AYLNMFSGHGSSVTCGDFTP 201 (290)
Q Consensus 129 g~i~i~d~~~~~~~~~~~~~~~--~i~~i~~~~~~~-~l~~~~~dg---~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~ 201 (290)
|.+.|||++..+.+..+..+.+ .+..++|||+.. .|++++.|. .|.+||+|.. .+++.+.+|...|.++.|++
T Consensus 184 g~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~ 263 (1049)
T KOG0307|consen 184 GRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCP 263 (1049)
T ss_pred CCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCC
Confidence 9999999999988877765544 477899999754 666666543 5999999864 57788889999999999999
Q ss_pred CC-CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc
Q 022910 202 DG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGK 269 (290)
Q Consensus 202 ~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~ 269 (290)
.+ .+|++++.|++|.+|+..+++.+..+.. ....+..+.|+|. ...+++++-||.|-||.+.+..
T Consensus 264 ~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~---~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 264 QDPRLLLSSGKDNRIICWNPNTGEVLGELPA---QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCchhhhcccCCCCeeEecCCCceEeeecCC---CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 55 8889999999999999999998888876 6788999999994 4588899999999999987654
No 153
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=5.9e-22 Score=150.14 Aligned_cols=228 Identities=22% Similarity=0.409 Sum_probs=176.9
Q ss_pred ceeeeccCCcCEEEEEECCCCCcEEEEecCC-------CcEEEEEccCC---------eeeeeec-cccCCEEEEEECCC
Q 022910 56 STHIFSGHSDEVYSVACSPTDATLVATGGGD-------DKGFFWRINQG---------DWASEIQ-GHKDSVSSLAFSMD 118 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~d-------g~i~iw~~~~~---------~~~~~~~-~~~~~i~~~~~~~~ 118 (290)
....|..|.+.|..++-+|.++.+|+|+..+ -.+-||.+... +.+..+. .+-+.|.|+.|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 3456778999999999999999999987542 23689988653 2333443 45668999999999
Q ss_pred CCEEEEEeCCCcEEEEcCCCCce-EEEEec-----CCCCEEEEEEcC--CCCEEEEeeCCCeEEEEECCcccEEEeee-c
Q 022910 119 GQLLASGGLDGLVQIWDPSSGNL-KCTLEG-----PGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFS-G 189 (290)
Q Consensus 119 ~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~-----~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~ 189 (290)
+..+++-. +..|.+|++..+.. +..+.. +....++-+|+| +++.+++.+ ++++..||+|+.+....+. +
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhh
Confidence 99999877 78999999987765 333322 344577888998 666776654 6999999999987665554 5
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcC
Q 022910 190 HGSSVTCGDFTPDGK-TICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNIT 266 (290)
Q Consensus 190 ~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~ 266 (290)
|...|..+.|+|+.+ +|++|+.||.|+|||.|..+ +++.+.. |...|.++.|+| ..++|++|+.|..|.+|...
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~---HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG---HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC---CceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 888899999999765 56789999999999998654 3444444 889999999999 56789999999999999753
Q ss_pred CC-----------------------------cEEEEEccCCCcEEEEEEec
Q 022910 267 TG-----------------------------KVVSSLVSHTDSIECIGFSR 288 (290)
Q Consensus 267 ~~-----------------------------~~~~~~~~~~~~v~~i~~s~ 288 (290)
+- .++.++..|...|++++||.
T Consensus 290 svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSs 340 (370)
T KOG1007|consen 290 SVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSS 340 (370)
T ss_pred ccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeecc
Confidence 21 14557788999999999985
No 154
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.89 E-value=1.7e-22 Score=151.13 Aligned_cols=235 Identities=17% Similarity=0.244 Sum_probs=179.6
Q ss_pred CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCCEEEEEeCCCc
Q 022910 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGL 130 (290)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~ 130 (290)
.|+.|...|++|.+.|+++.|-. +++ |.+|..-|.|++|.+.+.+....+. .+...|+.+.--|+ ..+.+-+.|+.
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa-~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~ 78 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQA-NER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPL 78 (323)
T ss_pred CCCCCeeEeccccchheehhhcc-chh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCce
Confidence 46789999999999999999987 444 7799999999999999988888777 57788999988887 56788888999
Q ss_pred EEEEcCCCCceEEE---------------------------E--------------------------ecCCCCEEEEEE
Q 022910 131 VQIWDPSSGNLKCT---------------------------L--------------------------EGPGGGVEWVSW 157 (290)
Q Consensus 131 i~i~d~~~~~~~~~---------------------------~--------------------------~~~~~~i~~i~~ 157 (290)
+.+|++.-+..+.. + ....+.+.|..+
T Consensus 79 L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 79 LILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 99998764221110 0 001133444443
Q ss_pred cC-CCC--EEEEeeCCCeEEEEECCccc----------EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe
Q 022910 158 HP-RGH--IVLAGSEDSTVWMWNADRAA----------YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224 (290)
Q Consensus 158 ~~-~~~--~l~~~~~dg~i~i~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 224 (290)
.. .+. ++++|..+|.+.+||+.++. .......|..+|.++.|.+.-..=++|+.+-.+..|.+....
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence 22 222 67788899999999999873 333445688999999998866666778888888899876431
Q ss_pred e-eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910 225 N-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 225 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d 289 (290)
. ...-..+.....++..+..-||++++|+++.|++||||..++..++..++-|.+.|.+++|+|+
T Consensus 239 gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd 304 (323)
T KOG0322|consen 239 GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD 304 (323)
T ss_pred CcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC
Confidence 1 1111111114567889999999999999999999999999999999999999999999999997
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=3.2e-22 Score=153.97 Aligned_cols=226 Identities=19% Similarity=0.312 Sum_probs=173.8
Q ss_pred CCcCEEEEEECCC---CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCC-CEEEEEeCCCcEEEEcCCC
Q 022910 63 HSDEVYSVACSPT---DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSS 138 (290)
Q Consensus 63 h~~~v~~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~ 138 (290)
|...-+.++|+-+ +..++|+|+.-|.|+|.|+.+++....+.+|...|..+.|.|.. ++++++|.|..|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 5566677777642 34588888899999999999999999999999999999999965 6899999999999999999
Q ss_pred CceEEEEe---cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE------E-------------------E---ee
Q 022910 139 GNLKCTLE---GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY------L-------------------N---MF 187 (290)
Q Consensus 139 ~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~-------------------~---~~ 187 (290)
..++..+- +|...|.++.|++++.+|++++.|..|++|++...+. . . +-
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 99998875 5888999999999999999999999999999984211 0 0 11
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC-CCCee----------eEEEeCCCCcccCeEEEEE--cCCCCEEEEE
Q 022910 188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP-KSGEN----------IHVIRGHPYHTEGLTCLTI--SADSTLALSG 254 (290)
Q Consensus 188 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~----------~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~ 254 (290)
..|...|.|+.|- |+++++-+.++.|..|.. +-.+. ...+.........++.+.| .|-+++||.|
T Consensus 248 diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g 325 (385)
T KOG1034|consen 248 DIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG 325 (385)
T ss_pred ccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence 2356667777774 678999888999999987 22221 1122222224445666555 5668899999
Q ss_pred eCCCcEEEEEcCCCcEE--EEEc--cCCCcEEEEEEecCC
Q 022910 255 SKDGSVHMVNITTGKVV--SSLV--SHTDSIECIGFSRSE 290 (290)
Q Consensus 255 ~~dg~i~~wd~~~~~~~--~~~~--~~~~~v~~i~~s~d~ 290 (290)
...|.|++||++...+. .++. .....|+..+||.||
T Consensus 326 nq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg 365 (385)
T KOG1034|consen 326 NQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG 365 (385)
T ss_pred cCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccC
Confidence 99999999999876552 2222 124689999999876
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=1.1e-22 Score=156.47 Aligned_cols=212 Identities=22% Similarity=0.382 Sum_probs=165.8
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec---cccCCEEEEEECCCCCEEEEEeCCC
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDGQLLASGGLDG 129 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg 129 (290)
..+....+.+|..+|+.+.|+|...+++++++.|..|++|++++..++..+. +|...|.++.|++++.+|++++.|.
T Consensus 124 ~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh 203 (385)
T KOG1034|consen 124 SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH 203 (385)
T ss_pred hhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcc
Confidence 5667788899999999999999888999999999999999999999988764 7999999999999999999999999
Q ss_pred cEEEEcCCCCceEE----------------------------EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCc-
Q 022910 130 LVQIWDPSSGNLKC----------------------------TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR- 180 (290)
Q Consensus 130 ~i~i~d~~~~~~~~----------------------------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~- 180 (290)
+|++|++...+... +..-|...|.|+.|- |+++++-+-++.|..|...+
T Consensus 204 slk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl 281 (385)
T KOG1034|consen 204 SLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKL 281 (385)
T ss_pred eEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchh
Confidence 99999997321100 111244455555553 67899988889999998721
Q ss_pred c-------------cEEEeeecCCCCeEEEEE--cCCCCEEEEEeCCCeEEEEcCCCCeee-EEEeCCCCcccCeEEEEE
Q 022910 181 A-------------AYLNMFSGHGSSVTCGDF--TPDGKTICTGSDDATLRVWNPKSGENI-HVIRGHPYHTEGLTCLTI 244 (290)
Q Consensus 181 ~-------------~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~ 244 (290)
. ..+..+......|.-+.| .|-++.||.|.+.|.|++||++...+. .+...+......|...+|
T Consensus 282 ~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sf 361 (385)
T KOG1034|consen 282 EESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSF 361 (385)
T ss_pred hhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeee
Confidence 1 123344444455555554 566789999999999999999987663 111122225678999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcC
Q 022910 245 SADSTLALSGSKDGSVHMVNIT 266 (290)
Q Consensus 245 ~~~~~~l~~~~~dg~i~~wd~~ 266 (290)
+.++.+|+..+.|++|.-||..
T Consensus 362 S~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 362 SRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cccCcEEEEEeCCCcEEEEEee
Confidence 9999999999999999999964
No 157
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.6e-21 Score=147.75 Aligned_cols=199 Identities=18% Similarity=0.220 Sum_probs=161.6
Q ss_pred CCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCc
Q 022910 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (290)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 130 (290)
+........+..|..+|.|+.+++ ....+++|+.|++|++||.........+. ....|.++.. .++.|++|+.+..
T Consensus 81 Dln~~~~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~ 156 (323)
T KOG1036|consen 81 DLNTGNEDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV--SGNRLVVGTSDRK 156 (323)
T ss_pred EecCCcceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccc-cCceEEEEec--cCCEEEEeecCce
Confidence 345566677788999999999998 77788899999999999998755555555 4458888877 6778999999999
Q ss_pred EEEEcCCCCceEEEEe--cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc----cEEEeeecCC---------CCeE
Q 022910 131 VQIWDPSSGNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA----AYLNMFSGHG---------SSVT 195 (290)
Q Consensus 131 i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~---------~~i~ 195 (290)
+.+||+++.....+.. .-...++|+++-|++.=+++++-+|.|.+=.+... .....|+.|. -+|.
T Consensus 157 v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVN 236 (323)
T KOG1036|consen 157 VLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVN 236 (323)
T ss_pred EEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEec
Confidence 9999999876543222 23457899999998888999999999998776655 3334444443 3799
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC
Q 022910 196 CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256 (290)
Q Consensus 196 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 256 (290)
+|+|+|--..|++|+.||.|.+||+.+.+.+..+.. ....|.+++|+.+|..||+++.
T Consensus 237 ai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~---~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 237 AIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK---YETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eeEeccccceEEecCCCceEEEccCcchhhhhhccC---CCCceEEEEeccCCCeEEEEec
Confidence 999999888999999999999999999888777775 4667999999999999999975
No 158
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.89 E-value=3e-23 Score=176.84 Aligned_cols=227 Identities=22% Similarity=0.405 Sum_probs=179.6
Q ss_pred ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 135 (290)
.++.|.||.++|+|+.|.. .++++++|+.|..++||...+..+.....+|.+.|+.++.+.++.+++++|.|..|++|.
T Consensus 182 ~ikrLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 4566789999999999998 888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEe---ee-cCCCCe-----------------
Q 022910 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM---FS-GHGSSV----------------- 194 (290)
Q Consensus 136 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~-~~~~~i----------------- 194 (290)
+..+.++..+.+|.+.|++++|+|-. +.+.||++++||.+-...+.. .. .....+
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 99999999999999999999999954 778899999999871100000 00 000111
Q ss_pred ---------EEEEEcCCC-----------CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC-CCCEEEE
Q 022910 195 ---------TCGDFTPDG-----------KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALS 253 (290)
Q Consensus 195 ---------~~~~~~~~~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 253 (290)
..++|.... .+.+++-.+..+.+|++.++...+.+.+ |...+..+.++| +.+...+
T Consensus 337 d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g---hsd~~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG---HSDEVYVLDVHPFNPRIAMS 413 (1113)
T ss_pred CcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc---cccceeeeeecCCCcHhhhh
Confidence 112222222 2223333455677888888887777776 778899999999 6677788
Q ss_pred EeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 254 GSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 254 ~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
++.||.+.|||+..|.+++.+......+..-+||+||
T Consensus 414 ag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdg 450 (1113)
T KOG0644|consen 414 AGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDG 450 (1113)
T ss_pred ccCCCceEeeecccCCcceeeecccceeeccccCCCC
Confidence 9999999999999999888766445667777899886
No 159
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=1.9e-21 Score=162.75 Aligned_cols=234 Identities=18% Similarity=0.251 Sum_probs=188.0
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC----eeeeeeccccCCEEEEEECCCCCEEEEEeCCC
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 129 (290)
-.+...+.||.+.|+.++|.| .+.+|++.+.|-+-|+|-.-.. -.+.+-+-|...++|++|-+....|++|....
T Consensus 351 w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEK 429 (764)
T KOG1063|consen 351 WTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEK 429 (764)
T ss_pred eeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccce
Confidence 355667789999999999999 6678889999999999976522 22334456888999999988666789999899
Q ss_pred cEEEEcCCC-------------------------------------------Cce-------------------------
Q 022910 130 LVQIWDPSS-------------------------------------------GNL------------------------- 141 (290)
Q Consensus 130 ~i~i~d~~~-------------------------------------------~~~------------------------- 141 (290)
.+|+|+... |..
T Consensus 430 VlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqL 509 (764)
T KOG1063|consen 430 VLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQL 509 (764)
T ss_pred eeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHH
Confidence 999997431 000
Q ss_pred --------EEEEecCCCCEEEEEEcCCCCEEEEeeCC-----CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEE
Q 022910 142 --------KCTLEGPGGGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT 208 (290)
Q Consensus 142 --------~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 208 (290)
++.+.+|...|.+++.+|+++++|+++.. ..|++|+..+...++.+.+|.-.|+.|+|+|++++|++
T Consensus 510 q~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLs 589 (764)
T KOG1063|consen 510 QQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLS 589 (764)
T ss_pred HHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEE
Confidence 01135688899999999999999999864 35999999998888899999999999999999999999
Q ss_pred EeCCCeEEEEcCCCCee-eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--cEEEE--EccCCCcEEE
Q 022910 209 GSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG--KVVSS--LVSHTDSIEC 283 (290)
Q Consensus 209 ~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--~~~~~--~~~~~~~v~~ 283 (290)
.+.|+++.+|....... -..+...+.|..-|..+.|+|++.+++|++.|.+|++|..... +.+.. ...+...|+.
T Consensus 590 vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTA 669 (764)
T KOG1063|consen 590 VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTA 669 (764)
T ss_pred eecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceee
Confidence 99999999998754332 1223334458889999999999999999999999999999877 55544 3357789999
Q ss_pred EEEec
Q 022910 284 IGFSR 288 (290)
Q Consensus 284 i~~s~ 288 (290)
++|.|
T Consensus 670 v~~~~ 674 (764)
T KOG1063|consen 670 VAYLP 674 (764)
T ss_pred EEeec
Confidence 99876
No 160
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=1.3e-21 Score=163.74 Aligned_cols=212 Identities=23% Similarity=0.308 Sum_probs=172.0
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCC-----cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDD-----KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD 128 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 128 (290)
-+.++.|-||...|+|++.+| .++++|+++... .|++|+..+...+..+.+|.-.|+.++|+|++++|++.+.|
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred chhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence 456788899999999999999 889999987654 59999999988888999999999999999999999999999
Q ss_pred CcEEEEcCCCCce----EEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc--cEEEe--eecCCCCeEEEEEc
Q 022910 129 GLVQIWDPSSGNL----KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA--AYLNM--FSGHGSSVTCGDFT 200 (290)
Q Consensus 129 g~i~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~--~~~~~~~i~~~~~~ 200 (290)
+++.+|....... ....+.|..-|.+..|+|++.+|+|++.|.+|++|..... +.+.. ...+..+|++++|.
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYL 673 (764)
T ss_pred ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEee
Confidence 9999998754321 1235678889999999999999999999999999998877 44433 23478899999998
Q ss_pred C-----CCCEEEEEeCCCeEEEEcCCCC---------eeeEEEeCCCCcccCeEEEEEcCC----------CCEEEEEeC
Q 022910 201 P-----DGKTICTGSDDATLRVWNPKSG---------ENIHVIRGHPYHTEGLTCLTISAD----------STLALSGSK 256 (290)
Q Consensus 201 ~-----~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~ 256 (290)
| .+..+++|-..|.|.+|....- .....+.....+...|+.+.|.|. ...|++|+.
T Consensus 674 ~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~ 753 (764)
T KOG1063|consen 674 PVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGD 753 (764)
T ss_pred ccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecc
Confidence 8 2347789999999999985511 111222333347788999999974 235799999
Q ss_pred CCcEEEEEcC
Q 022910 257 DGSVHMVNIT 266 (290)
Q Consensus 257 dg~i~~wd~~ 266 (290)
|..++++++.
T Consensus 754 D~~vri~nv~ 763 (764)
T KOG1063|consen 754 DESVRIFNVD 763 (764)
T ss_pred cceeEEeecc
Confidence 9999999864
No 161
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.8e-21 Score=147.14 Aligned_cols=201 Identities=19% Similarity=0.353 Sum_probs=163.2
Q ss_pred eeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC-
Q 022910 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS- 137 (290)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~- 137 (290)
.-+.|+-.|..+-... ++.+|++++.|..|.+|++. |+.+..+......-+..+.+|+|+++++++...-|++|.+-
T Consensus 182 f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f 259 (420)
T KOG2096|consen 182 FERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIF 259 (420)
T ss_pred cchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence 3345777777777776 78899999999999999998 88888887777777889999999999999999999999863
Q ss_pred --CC-----ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc-------cEEEee----ecCCCCeEEEEE
Q 022910 138 --SG-----NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-------AYLNMF----SGHGSSVTCGDF 199 (290)
Q Consensus 138 --~~-----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~----~~~~~~i~~~~~ 199 (290)
.| ..+..+++|...|..++|+++...+++.+.||.+++||+.-. +.++.. ....+....+.+
T Consensus 260 ~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~l 339 (420)
T KOG2096|consen 260 TKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLEL 339 (420)
T ss_pred ccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEe
Confidence 22 345678999999999999999999999999999999997532 122222 112334458999
Q ss_pred cCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (290)
Q Consensus 200 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~ 265 (290)
+|.|+.|+++. ...|++|..++++....+... |...|.+++|+++|+++++++ |..++++.-
T Consensus 340 sP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~--h~~~Is~is~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 340 SPSGDSLAVSF-GSDLKVFASEDGKDYPELEDI--HSTTISSISYSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred CCCCcEEEeec-CCceEEEEcccCccchhHHHh--hcCceeeEEecCCCcEEeeec-ceeeeeecC
Confidence 99999888765 457999999998877666544 889999999999999999886 678888763
No 162
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.4e-21 Score=147.74 Aligned_cols=179 Identities=18% Similarity=0.224 Sum_probs=143.3
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec
Q 022910 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG 189 (290)
Q Consensus 110 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 189 (290)
..|+.|++.|.+||+|+.+|.|.|||+.+..+...+.+|..+|++++|+++|+.|++++.|..|.+||+..+.+++++.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCCeEEEEEcCCC-CEEEEEeCCCeEEEEcCCCCeeeEEEeCCC--CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910 190 HGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHP--YHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (290)
Q Consensus 190 ~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 266 (290)
..++|+...|+|.. +.+++.-.+..-.+.++..+.. ..+.... .......+..|.+.|+++++|...|.+.+++..
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 78899999999943 3344433344444555543221 1222111 112223344688999999999999999999999
Q ss_pred CCcEEEEEccCC-CcEEEEEEecCC
Q 022910 267 TGKVVSSLVSHT-DSIECIGFSRSE 290 (290)
Q Consensus 267 ~~~~~~~~~~~~-~~v~~i~~s~d~ 290 (290)
+.+++.+++... ..|.+|.|+..|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g 208 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKG 208 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccC
Confidence 999999988655 678888887653
No 163
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.8e-20 Score=136.76 Aligned_cols=215 Identities=18% Similarity=0.275 Sum_probs=163.3
Q ss_pred cCEEEEEECCCCCcEEEEecCCCcEEEEEccC---------C-eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQ---------G-DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (290)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---------~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (290)
..|.+-+|+| .+++|++|..+|.|.++.+.. + ..+...++|.++|+.++|. ..+|++|+ ||.|+-|
T Consensus 11 ~tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 11 NTVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence 4566778999 788999999999999999864 1 2344558899999999996 55677766 5999998
Q ss_pred cCCCCce------EEEEe-------cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC
Q 022910 135 DPSSGNL------KCTLE-------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP 201 (290)
Q Consensus 135 d~~~~~~------~~~~~-------~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 201 (290)
..+.... +...+ ..-..|++|...|..+.+++++.|+.++-||+++++..+.+++|...|.++.--.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 7653211 11111 1123589999999988888888999999999999999999999999999998855
Q ss_pred CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC-------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE
Q 022910 202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPY-------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL 274 (290)
Q Consensus 202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 274 (290)
....+++|+.||++|+||+++++.+..+...+. ....|-+++. +..+|++|+ ...+.+|++++.++...|
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVF 243 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEE
Confidence 566799999999999999999999888765431 1223445554 556887775 457999999998877776
Q ss_pred ccCCCcEEEEEEe
Q 022910 275 VSHTDSIECIGFS 287 (290)
Q Consensus 275 ~~~~~~v~~i~~s 287 (290)
+. .++|..+.|-
T Consensus 244 pi-pa~v~~v~F~ 255 (325)
T KOG0649|consen 244 PI-PARVHLVDFV 255 (325)
T ss_pred ec-ccceeEeeee
Confidence 54 3445555443
No 164
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.88 E-value=1.7e-20 Score=144.13 Aligned_cols=225 Identities=16% Similarity=0.214 Sum_probs=177.4
Q ss_pred eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe---eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (290)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (290)
..+.--..+|+|.+|++ ++..+|++.....|.||.....+ ...+++.|...|+++.|+|..+.|++|+.|..-++|
T Consensus 4 ~~~~~~~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred EEeeeccCceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence 44555678999999999 88899999999999999987654 677889999999999999999999999999999999
Q ss_pred cCCC-C--ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE----EEeeecCCCCeEEEEEcCCCCEEE
Q 022910 135 DPSS-G--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY----LNMFSGHGSSVTCGDFTPDGKTIC 207 (290)
Q Consensus 135 d~~~-~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~ 207 (290)
.... + ++...+..+....+++.|+|.++.||+|+....|.||-++...- ...-+.+.+.|.++.|+|++-+|+
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla 162 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA 162 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence 9843 3 44555666888899999999999999999999999998876532 122234678899999999999999
Q ss_pred EEeCCCeEEEEcCCC------------------CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 022910 208 TGSDDATLRVWNPKS------------------GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269 (290)
Q Consensus 208 ~~~~dg~i~i~d~~~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 269 (290)
+|+.|+..|||...- |+.+..+. ...+.+..+.|+|.|..|+-.+.|+.+.+-|.....
T Consensus 163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~---~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS---SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc---cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 999999999986421 01111111 256789999999999999999999999999976654
Q ss_pred -EEEEEccCCCcEEEEEE
Q 022910 270 -VVSSLVSHTDSIECIGF 286 (290)
Q Consensus 270 -~~~~~~~~~~~v~~i~~ 286 (290)
.+..+....-+.+++.|
T Consensus 240 ~~v~~~~~~~lP~ls~~~ 257 (361)
T KOG1523|consen 240 ERVQSVATAQLPLLSVSW 257 (361)
T ss_pred hhccchhhccCCceeeEe
Confidence 33333322245555554
No 165
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=1.8e-20 Score=160.02 Aligned_cols=222 Identities=20% Similarity=0.269 Sum_probs=158.5
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCC---CcEEEEEccCCee--eeeeccccCCEEEEEECCCCCEEEEEe-C
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGD---DKGFFWRINQGDW--ASEIQGHKDSVSSLAFSMDGQLLASGG-L 127 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~-~ 127 (290)
....+.+..|...+.+.+|+| ++..|+..+.+ ..|++|++.+++. +..+.+ ....++|+|+|++|+.++ .
T Consensus 193 g~~~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~ 268 (429)
T PRK01742 193 GFNQFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSK 268 (429)
T ss_pred CCCceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEec
Confidence 333566788888999999999 55555555432 4799999988753 333333 344689999999888764 5
Q ss_pred CCcEEEE--cCCCCceEEEEecCCCCEEEEEEcCCCCEEEEee-CCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcCCC
Q 022910 128 DGLVQIW--DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDG 203 (290)
Q Consensus 128 dg~i~i~--d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~ 203 (290)
+|.+.|| ++.+++. ..+..+...+....|+|+|+.|+.++ .+|...+|++... .....+ .+.. ....|+|+|
T Consensus 269 ~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG 344 (429)
T PRK01742 269 DGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADG 344 (429)
T ss_pred CCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCC
Confidence 7765555 6666654 44555666788899999999877655 5677777776432 122223 2333 457899999
Q ss_pred CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCcEEEEEccCCCcE
Q 022910 204 KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI--TTGKVVSSLVSHTDSI 281 (290)
Q Consensus 204 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~--~~~~~~~~~~~~~~~v 281 (290)
++|+..+.++ +.+||+.+++....... . ....+.|+|+|++|+.++.+|.+.+|.+ .+|+.++.+..|.+.+
T Consensus 345 ~~ia~~~~~~-i~~~Dl~~g~~~~lt~~---~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~ 418 (429)
T PRK01742 345 KTLVMINGDN-VVKQDLTSGSTEVLSST---F--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQV 418 (429)
T ss_pred CEEEEEcCCC-EEEEECCCCCeEEecCC---C--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCC
Confidence 9998887765 56699988865432222 1 2346789999999999999998888876 3688899999888899
Q ss_pred EEEEEecC
Q 022910 282 ECIGFSRS 289 (290)
Q Consensus 282 ~~i~~s~d 289 (290)
...+|||-
T Consensus 419 ~~p~wsp~ 426 (429)
T PRK01742 419 KFPAWSPY 426 (429)
T ss_pred CCcccCCC
Confidence 99999983
No 166
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=5.2e-19 Score=150.38 Aligned_cols=227 Identities=33% Similarity=0.648 Sum_probs=189.0
Q ss_pred eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-eeeeecccc-CCEEEEEE-CCCCC-EEEEEeC-CCcEE
Q 022910 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-WASEIQGHK-DSVSSLAF-SMDGQ-LLASGGL-DGLVQ 132 (290)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~-~~i~~~~~-~~~~~-~l~~~~~-dg~i~ 132 (290)
..+..|...|.++.+.+ .+..++.++.++.+.+|+...+. ....+..+. ..+..+.+ .+++. .++..+. ++.+.
T Consensus 59 ~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 59 LLLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred heeeeccceEEEEEECC-CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 46789999999999999 77778888899999999999886 666666544 37777777 78887 5555444 89999
Q ss_pred EEcCCC-CceEEEEecCCCCEEEEEEcCCCCEEEEeeC-CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCC-EEEEE
Q 022910 133 IWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-TICTG 209 (290)
Q Consensus 133 i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 209 (290)
+|+... ......+..|...|..++|+|++.++++++. ++.+++|++.....+..+..|...+.+++|+|++. +++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence 999998 7788888899999999999999998888886 99999999999888888988999999999999988 45555
Q ss_pred eCCCeEEEEcCCCCeeeE-EEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE-EEEEccCCCcEEEEEEe
Q 022910 210 SDDATLRVWNPKSGENIH-VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV-VSSLVSHTDSIECIGFS 287 (290)
Q Consensus 210 ~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~i~~s 287 (290)
+.|+.|++||...+.... .+.. |.... ...|+|++.++++++.++.+++|++..... +..+..|...|.++.|+
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 293 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSG---HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCC---CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEEC
Confidence 899999999988777666 4554 44443 338999998999999999999999987665 55556788999999999
Q ss_pred cC
Q 022910 288 RS 289 (290)
Q Consensus 288 ~d 289 (290)
|+
T Consensus 294 ~~ 295 (466)
T COG2319 294 PD 295 (466)
T ss_pred CC
Confidence 84
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=7.5e-21 Score=150.19 Aligned_cols=215 Identities=27% Similarity=0.416 Sum_probs=163.7
Q ss_pred CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEcc--------C--------CeeeeeeccccCCEEEEEE
Q 022910 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN--------Q--------GDWASEIQGHKDSVSSLAF 115 (290)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~--------~--------~~~~~~~~~~~~~i~~~~~ 115 (290)
..-+....|..|..+|+++.|+| .+.+||+|+.+|.|.+|... + ......+.+|...|..++|
T Consensus 53 ~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~W 131 (434)
T KOG1009|consen 53 MKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAW 131 (434)
T ss_pred eeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhc
Confidence 34566788899999999999999 88999999999999999876 2 1234456789999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee-------
Q 022910 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS------- 188 (290)
Q Consensus 116 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------- 188 (290)
+|++.++++++.|..+++||+..|+....+..|...+..++|.|-+.++++-+.|...+.+.+...+.+....
T Consensus 132 s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~ 211 (434)
T KOG1009|consen 132 SPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAK 211 (434)
T ss_pred cCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence 9999999999999999999999999999999999999999999999999988888766666554322111000
Q ss_pred ---c---------C----CCCeEEEEEcCCCCE-----------------------------------------------
Q 022910 189 ---G---------H----GSSVTCGDFTPDGKT----------------------------------------------- 205 (290)
Q Consensus 189 ---~---------~----~~~i~~~~~~~~~~~----------------------------------------------- 205 (290)
. | ..-...++|+|+|.+
T Consensus 212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~ 291 (434)
T KOG1009|consen 212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFS 291 (434)
T ss_pred ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEee
Confidence 0 0 001122233333322
Q ss_pred -----------------------EEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 022910 206 -----------------------ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262 (290)
Q Consensus 206 -----------------------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 262 (290)
+++++. ..|++||..+..++..+... |-..++.++|+++|.+|+..+.||...+
T Consensus 292 pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~ni--hy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 292 PVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNI--HYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred eeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeee--eeeeecceeecCCCcEEEEeccCCceEE
Confidence 334443 35777777777776666654 7889999999999999999999998888
Q ss_pred EEcCCCcE
Q 022910 263 VNITTGKV 270 (290)
Q Consensus 263 wd~~~~~~ 270 (290)
.-+...++
T Consensus 369 vtfe~~el 376 (434)
T KOG1009|consen 369 VTFEPWEL 376 (434)
T ss_pred EEEcchhc
Confidence 77765543
No 168
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=2.7e-21 Score=156.44 Aligned_cols=221 Identities=17% Similarity=0.244 Sum_probs=173.8
Q ss_pred EEEEEECCCCCcEEEEecCCCcEEEEEccCC--eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEE
Q 022910 67 VYSVACSPTDATLVATGGGDDKGFFWRINQG--DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144 (290)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 144 (290)
+.++.|+......+++.+.|..+++|.-... +....-+.....-.|++......|+++|+..+.|+|||++...+.+.
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~ 116 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRF 116 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhh
Confidence 8899998743334445566788999975432 11111111112334555555568999999999999999998777888
Q ss_pred EecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecC-CCCeEEEEEcCCCCEE-EEEeCCCeEEEEcCCC
Q 022910 145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH-GSSVTCGDFTPDGKTI-CTGSDDATLRVWNPKS 222 (290)
Q Consensus 145 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~ 222 (290)
++.|...|+++.++-...+||+++..|.|.|..+.++.....+... ...|+-+.|+|..+.+ .+++.+|.|.+||+..
T Consensus 117 lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g 196 (673)
T KOG4378|consen 117 LKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG 196 (673)
T ss_pred ccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC
Confidence 8999999999999999999999999999999999999877777755 4456689999977655 5789999999999987
Q ss_pred CeeeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 223 GENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
..++..+. ..|..+...++|+| +..+|++.+.|..|.+||+++.+....+.. ..+.+.++|+++|
T Consensus 197 ~sp~~~~~--~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G 262 (673)
T KOG4378|consen 197 MSPIFHAS--EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECG 262 (673)
T ss_pred CCcccchh--hhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-cCCcceeeecCCc
Confidence 76655443 34889999999999 667889999999999999998877777764 6799999999987
No 169
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=1.8e-20 Score=148.07 Aligned_cols=226 Identities=23% Similarity=0.397 Sum_probs=176.5
Q ss_pred CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe---------eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---------WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (290)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (290)
-..+|..+.|.+++...+|||+.|..|++|.+..+. ....+..|...|+++.|+|+|..||+|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 356899999999766699999999999999987532 34456789999999999999999999999999999
Q ss_pred EcCC--------C--------CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEE
Q 022910 134 WDPS--------S--------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG 197 (290)
Q Consensus 134 ~d~~--------~--------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~ 197 (290)
|-.. + -.....+.+|...|..++|+|++.++++++-|..+++||+..++....+..|...+..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 9765 2 12234566788899999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEe-----CC---------------CCcccCeEEEEEcCCCCEEEEEeC-
Q 022910 198 DFTPDGKTICTGSDDATLRVWNPKSGENIHVIR-----GH---------------PYHTEGLTCLTISADSTLALSGSK- 256 (290)
Q Consensus 198 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~---------------~~~~~~v~~~~~~~~~~~l~~~~~- 256 (290)
+|.|-++++++-+.|...+++.+...+.+..+. .. .....-...++|+|+|.+|++...
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 999999999998888877777765443332221 00 001223456789999999998643
Q ss_pred ---CCc-----EEEEEcCC-CcEEEEEccCCCcEEEEEEec
Q 022910 257 ---DGS-----VHMVNITT-GKVVSSLVSHTDSIECIGFSR 288 (290)
Q Consensus 257 ---dg~-----i~~wd~~~-~~~~~~~~~~~~~v~~i~~s~ 288 (290)
.+. .++|+-+. .+++..+.....+...+.|+|
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p 292 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP 292 (434)
T ss_pred eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee
Confidence 232 34444332 346666777777777887776
No 170
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=1.2e-18 Score=148.06 Aligned_cols=227 Identities=33% Similarity=0.641 Sum_probs=188.7
Q ss_pred ceeeeccCCc-CEEEEEE-CCCCCcEEEEe-cCCCcEEEEEccC-CeeeeeeccccCCEEEEEECCCCCEEEEEeC-CCc
Q 022910 56 STHIFSGHSD-EVYSVAC-SPTDATLVATG-GGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DGL 130 (290)
Q Consensus 56 ~~~~~~~h~~-~v~~~~~-~~~~~~~l~~~-~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~ 130 (290)
....+.++.. .+..+.+ .+....+++.. ..++.+.+|+... ......+..|...|..++|+|++.++++++. ++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 179 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc
Confidence 5666666443 7777777 77444245444 4499999999998 7788888899999999999999998888886 999
Q ss_pred EEEEcCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEE-eeecCCCCeEEEEEcCCCCEEEE
Q 022910 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLN-MFSGHGSSVTCGDFTPDGKTICT 208 (290)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~ 208 (290)
+++|++..+..+..+..|...+.+++|+|++. .+++++.++.|++||...+..+. .+..|.... ...|+|++.++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 258 (466)
T COG2319 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLAS 258 (466)
T ss_pred eEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEE
Confidence 99999999888989998999999999999998 55555899999999998777777 677777775 4489999988999
Q ss_pred EeCCCeEEEEcCCCCee-eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc--cCCCcEEEEE
Q 022910 209 GSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV--SHTDSIECIG 285 (290)
Q Consensus 209 ~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~i~ 285 (290)
++.++.+++|+++.... ...+ ..|...+.++.|.|++..+++++.|+.+.+|+..+........ .|...|..+.
T Consensus 259 ~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (466)
T COG2319 259 GSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335 (466)
T ss_pred ecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEE
Confidence 99999999999987765 4444 2268899999999988888889999999999999888777776 7877888888
Q ss_pred E
Q 022910 286 F 286 (290)
Q Consensus 286 ~ 286 (290)
|
T Consensus 336 ~ 336 (466)
T COG2319 336 F 336 (466)
T ss_pred E
Confidence 8
No 171
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7.2e-21 Score=151.04 Aligned_cols=196 Identities=22% Similarity=0.247 Sum_probs=158.6
Q ss_pred EEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec
Q 022910 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG 147 (290)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 147 (290)
.+++|+. ++..+++|+.||++|+|++.....+.....|...|.++.|+|+|++|++.+.+ ..+||+..++..+.....
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999 88899999999999999999888888888899999999999999999999999 899999999976665542
Q ss_pred --CCCCEEEEEEcCCC---C--EEEEeeCCCeEEEEECCcccE-----EEeeecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910 148 --PGGGVEWVSWHPRG---H--IVLAGSEDSTVWMWNADRAAY-----LNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (290)
Q Consensus 148 --~~~~i~~i~~~~~~---~--~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 215 (290)
....+..+.|+.++ . .++.....+.|+.|++..... .++.......|++++.+++|++++.|+.+|.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 22346667787766 3 333333456677776643221 22222234579999999999999999999999
Q ss_pred EEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 267 (290)
.|++..+.+.++.++.. |...|+.+.|+|+.+++++.+.+..+.+..+.-
T Consensus 306 ai~~~~~lq~~~~vk~a--H~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEA--HLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhh--heeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999998887777654 888999999999999999999999888887653
No 172
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=2.7e-20 Score=141.25 Aligned_cols=213 Identities=20% Similarity=0.338 Sum_probs=163.7
Q ss_pred CCCCceeeec-cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee-eeeec-----cccCCEEEEEECC--CCCEE
Q 022910 52 QPDDSTHIFS-GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQ-----GHKDSVSSLAFSM--DGQLL 122 (290)
Q Consensus 52 ~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~-----~~~~~i~~~~~~~--~~~~l 122 (290)
.+.+.+..|. .+-+.|.|+.|.| ++..+++-. +..|.+|++..+.. +..+. .+....++-+|+| +++.+
T Consensus 110 ~tlE~v~~Ldteavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 110 STLECVASLDTEAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred chhhHhhcCCHHHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence 4455666665 6777999999999 555555544 78999999987654 33222 3566788889998 67777
Q ss_pred EEEeCCCcEEEEcCCCCceEEEEe-cCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEE
Q 022910 123 ASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDF 199 (290)
Q Consensus 123 ~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~ 199 (290)
++.+ ++++..||+++.+....+. .|...+..+.|+|+.. +|++++.||.|++||+|.. .+++.+.+|...|.++.|
T Consensus 188 ~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 188 ATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred EEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence 7755 8999999999987776664 5778899999999765 7889999999999999875 478889999999999999
Q ss_pred cC-CCCEEEEEeCCCeEEEEcCCCCe---------------------ee-----EEEeCCCCcccCeEEEEEcC-CCCEE
Q 022910 200 TP-DGKTICTGSDDATLRVWNPKSGE---------------------NI-----HVIRGHPYHTEGLTCLTISA-DSTLA 251 (290)
Q Consensus 200 ~~-~~~~l~~~~~dg~i~i~d~~~~~---------------------~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l 251 (290)
+| ..+++++|+.|..|.+|...+-. .. ..+.....|...|.+++|+. +.-++
T Consensus 267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiF 346 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIF 346 (370)
T ss_pred cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeE
Confidence 99 45678899999999999754321 00 11222334888999999997 55677
Q ss_pred EEEeCCCcEEEEEcCC
Q 022910 252 LSGSKDGSVHMVNITT 267 (290)
Q Consensus 252 ~~~~~dg~i~~wd~~~ 267 (290)
|+-+.||++.|=.+..
T Consensus 347 ASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 347 ASLSYDGRVIISSVPR 362 (370)
T ss_pred EEeccCceEEeecCCh
Confidence 8889999998866643
No 173
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=2.1e-20 Score=155.34 Aligned_cols=199 Identities=17% Similarity=0.303 Sum_probs=152.3
Q ss_pred EEECC--CCCcEEEEecCCCcEEEEEccCCeee------eeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 022910 70 VACSP--TDATLVATGGGDDKGFFWRINQGDWA------SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL 141 (290)
Q Consensus 70 ~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 141 (290)
..|++ ....+||.+..+|.|.++|....... .....|.+.|..+.|-|....|++++.|.++++||+.+.++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 44544 35579999999999999998764322 44557999999999999666899999999999999999988
Q ss_pred EEE--EecCCCCEEEEEEcCCC-CEEEEeeCCCeEEEEECCccc---------------------------EEEeeecCC
Q 022910 142 KCT--LEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAA---------------------------YLNMFSGHG 191 (290)
Q Consensus 142 ~~~--~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~---------------------------~~~~~~~~~ 191 (290)
+.. +.+|.+.+.+++|+|.. ..|++|+.||.|.|||++-.. .+.....+.
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 766 88999999999999954 588999999999999987432 011122334
Q ss_pred CCeEE---EEEcCCCCEEEEEeC-CCeEEEEcCCCCeeeEEEe-----CCCCc---ccCeEEEEEcCCCCEEEEEeCCCc
Q 022910 192 SSVTC---GDFTPDGKTICTGSD-DATLRVWNPKSGENIHVIR-----GHPYH---TEGLTCLTISADSTLALSGSKDGS 259 (290)
Q Consensus 192 ~~i~~---~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~-----~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~ 259 (290)
..|.+ +.+..|...|++++. |+.|+|||++......... ..+.+ ...++++.....|.+|++.+.|+.
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s 294 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS 294 (720)
T ss_pred CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence 44444 445567788888777 9999999999765433221 11112 446788888888899999999999
Q ss_pred EEEEEcCCC
Q 022910 260 VHMVNITTG 268 (290)
Q Consensus 260 i~~wd~~~~ 268 (290)
|++|++.+-
T Consensus 295 Iy~ynm~s~ 303 (720)
T KOG0321|consen 295 IYFYNMRSL 303 (720)
T ss_pred EEEEecccc
Confidence 999999753
No 174
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=3.6e-20 Score=140.65 Aligned_cols=223 Identities=16% Similarity=0.213 Sum_probs=169.6
Q ss_pred ccCCcCEEEEEECCCC----CcEEEEecCCCcEEEEEccCC--ee--eee-----eccccCCEEEEEECC-CCCEEEEEe
Q 022910 61 SGHSDEVYSVACSPTD----ATLVATGGGDDKGFFWRINQG--DW--ASE-----IQGHKDSVSSLAFSM-DGQLLASGG 126 (290)
Q Consensus 61 ~~h~~~v~~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~--~~--~~~-----~~~~~~~i~~~~~~~-~~~~l~~~~ 126 (290)
..|.-+++.+.|.|+. +.+|||++ ..+|+|.+... +. ... -..+..++++..|+. +-++|.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 3588899999999943 25777765 68999998742 11 111 124667999999986 667899999
Q ss_pred CCCcEEEEcCCCCc---eEEEEecCCCCEEEEEEcCCC-CEEEEeeCCCeEEEEECCcccEEEee---ecCCCCeEEEEE
Q 022910 127 LDGLVQIWDPSSGN---LKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDF 199 (290)
Q Consensus 127 ~dg~i~i~d~~~~~---~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~ 199 (290)
-|-+-.|||++++. ....+-.|...|..++|...+ ..||+.+.||.+++||+|.......+ .....+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999873 356677899999999999855 48999999999999999986543333 223567889999
Q ss_pred cC-CCCEEEEEeCC-CeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCc------
Q 022910 200 TP-DGKTICTGSDD-ATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGK------ 269 (290)
Q Consensus 200 ~~-~~~~l~~~~~d-g~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~------ 269 (290)
++ +.+++++-..| ..|.|.|+|... ++..++. |...|+.++|.| ....|++++.|..+.+||+...-
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~---H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d 327 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN---HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED 327 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhc---CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCC
Confidence 98 56777765544 579999998654 3445554 899999999999 56789999999999999997532
Q ss_pred EEEEEccCCCcEEEEEEecC
Q 022910 270 VVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 270 ~~~~~~~~~~~v~~i~~s~d 289 (290)
++..+. ..+.|..|.|+|.
T Consensus 328 Pilay~-a~~EVNqi~Ws~~ 346 (364)
T KOG0290|consen 328 PILAYT-AGGEVNQIQWSSS 346 (364)
T ss_pred chhhhh-ccceeeeeeeccc
Confidence 233333 3678999999864
No 175
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=3.4e-20 Score=152.12 Aligned_cols=189 Identities=21% Similarity=0.373 Sum_probs=159.2
Q ss_pred eeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCC--------CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCe
Q 022910 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS--------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST 172 (290)
Q Consensus 101 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 172 (290)
.++..|...|+.+.|.|....|++++.+|+|.+|++.. -+++.+|.+|.++|.|+++.+++.++++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 35667889999999999999999999999999999932 2578899999999999999999999999999999
Q ss_pred EEEEECCcc----------cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCC----------
Q 022910 173 VWMWNADRA----------AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH---------- 232 (290)
Q Consensus 173 i~i~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------- 232 (290)
|+.|++... .....+.+|...++.+++++....|++++.||+++.|+.....+ .++...
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 999976522 23356778999999999999999999999999999998764433 111000
Q ss_pred ---------------------------------------CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 022910 233 ---------------------------------------PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS 273 (290)
Q Consensus 233 ---------------------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 273 (290)
......+..+.++|.+.+.+++..|+.|+++|..+++++..
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 00123467788999999999999999999999999999999
Q ss_pred EccCCCcEEEEEEecCC
Q 022910 274 LVSHTDSIECIGFSRSE 290 (290)
Q Consensus 274 ~~~~~~~v~~i~~s~d~ 290 (290)
..+|...++++++.|+|
T Consensus 527 ~~a~~~svtslai~~ng 543 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNG 543 (577)
T ss_pred eeeccceecceeecCCC
Confidence 99999999999999876
No 176
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.1e-20 Score=143.15 Aligned_cols=197 Identities=17% Similarity=0.264 Sum_probs=156.7
Q ss_pred cEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC--CCCEEEEEeCCCcEEEEcCCCCceEEEE--ecCC-CCE
Q 022910 78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQIWDPSSGNLKCTL--EGPG-GGV 152 (290)
Q Consensus 78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~-~~i 152 (290)
..+|++...|.|++||..+++.+..++++...+..+.|.. ....+.+|+.||+|++||++.......+ ..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5788888999999999999999999999999999999976 4557999999999999999987655443 3333 467
Q ss_pred EEEEEcCCCCEEEEeeC----CCeEEEEECCcccE-EEee-ecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEcCCCCee
Q 022910 153 EWVSWHPRGHIVLAGSE----DSTVWMWNADRAAY-LNMF-SGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGEN 225 (290)
Q Consensus 153 ~~i~~~~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~ 225 (290)
.+++..-.++.+++|+. +-.|.+||+|..+. ++.+ ..|...|++++|+| +.++|++|+.||.|.+||+.....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 77777767888888864 66799999998765 5544 45999999999999 678999999999999999976533
Q ss_pred eEEEeCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcEEEEE
Q 022910 226 IHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSL 274 (290)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~ 274 (290)
--.+...-.+.+.|.++.|..++ +.|.+-+..+...+|+++.+.....+
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 22222222267789999999866 45788888999999999887654443
No 177
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.4e-20 Score=154.12 Aligned_cols=220 Identities=19% Similarity=0.284 Sum_probs=168.5
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECC--CCCEEEEEeCCCc
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSM--DGQLLASGGLDGL 130 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~dg~ 130 (290)
....+.|.||++.|.|+.|+. ++.+|++|+.|-.+.|||.-..+++..+. +|...|.+++|-| +.+.+++|+.|..
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred cchhhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 456678999999999999999 88999999999999999999888777764 8999999999998 4568999999999
Q ss_pred EEEEcCCCC----------ceEEEEecCCCCEEEEEEcCCC-CEEEEeeCCCeEEEEECCcccE----------EEeeec
Q 022910 131 VQIWDPSSG----------NLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAY----------LNMFSG 189 (290)
Q Consensus 131 i~i~d~~~~----------~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~ 189 (290)
|+++|+... .....+..|...|..++..|++ +.+.+++.||+|+-||++.... +..+..
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 999999842 3345566788889999999988 7899999999999999987421 111112
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEcCCCCe------------------eeEEEeCCCC-c--------ccCeEE
Q 022910 190 HGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGE------------------NIHVIRGHPY-H--------TEGLTC 241 (290)
Q Consensus 190 ~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~------------------~~~~~~~~~~-~--------~~~v~~ 241 (290)
.--...++.++| ...+|++|+.|-..++||.+... ++..+..... . ...++-
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 223568899999 56788999999999999953211 1111111100 0 112577
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE
Q 022910 242 LTISADSTLALSGSKDGSVHMVNITTGKVVSSL 274 (290)
Q Consensus 242 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 274 (290)
+.|+|+|.-|++.-..-.|+++|+..++....+
T Consensus 279 vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred EEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 899999987777666669999999887755443
No 178
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=7.7e-19 Score=147.21 Aligned_cols=218 Identities=18% Similarity=0.314 Sum_probs=170.1
Q ss_pred CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCce----
Q 022910 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL---- 141 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---- 141 (290)
.|+.++|-|++..++++++ ..+.+||...|....++++|...|.|++|+.+|+.+++|+.|..|.+|+..-...
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYS 91 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYS 91 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeec
Confidence 8999999996666666554 6899999999999999999999999999999999999999999999998542211
Q ss_pred ----EEEE---------------------------e--cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE--EEe
Q 022910 142 ----KCTL---------------------------E--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--LNM 186 (290)
Q Consensus 142 ----~~~~---------------------------~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~ 186 (290)
++.+ . .....+.+.+|..+|.+|+.|-.+|+|.+-+-..... +.+
T Consensus 92 H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~R 171 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIER 171 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeC
Confidence 1100 0 0123567778888899999999999999886543332 223
Q ss_pred eecCCCCeEEEEEcCCC-----CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 022910 187 FSGHGSSVTCGDFTPDG-----KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (290)
Q Consensus 187 ~~~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 261 (290)
..+.+++|.+++|+|.. ..+++.....++.+|.+. |+.+..-+. ..-...|+.+.++|.+++.|+.|+.+.
T Consensus 172 pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~---L~FdP~CisYf~NGEy~LiGGsdk~L~ 247 (1081)
T KOG1538|consen 172 PGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRA---LNFDPCCISYFTNGEYILLGGSDKQLS 247 (1081)
T ss_pred CCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccccc---CCCCchhheeccCCcEEEEccCCCceE
Confidence 33578899999999943 567888888888888774 444433332 345567899999999999999999999
Q ss_pred EEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 262 MVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 262 ~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
+|- +.|-.+.++-.....|+.++..|++
T Consensus 248 ~fT-R~GvrLGTvg~~D~WIWtV~~~PNs 275 (1081)
T KOG1538|consen 248 LFT-RDGVRLGTVGEQDSWIWTVQAKPNS 275 (1081)
T ss_pred EEe-ecCeEEeeccccceeEEEEEEccCC
Confidence 996 6788888887778899999999975
No 179
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=1.2e-19 Score=143.03 Aligned_cols=162 Identities=23% Similarity=0.385 Sum_probs=137.4
Q ss_pred eccccCCEEEEEECCC-CCEEEEEeCCCcEEEEcCCCC-------ceEEEEecCCCCEEEEEEcCC-CCEEEEeeCCCeE
Q 022910 103 IQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSG-------NLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTV 173 (290)
Q Consensus 103 ~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i 173 (290)
+.+|+++|..++|+|- ...||+||.|.+|.||.+..+ +++..+.+|...|--++|||. .+.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 4689999999999994 558999999999999998654 456788899999999999996 4689999999999
Q ss_pred EEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEE
Q 022910 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS 253 (290)
Q Consensus 174 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 253 (290)
.+|++.+++.+.++. |...|+++.|+.+|.+|++.+.|..|||||.++++.+..-..|.+ .....+.|-.+|.++.|
T Consensus 157 ~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG--~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG--AKPARAIFLASGKIFTT 233 (472)
T ss_pred EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC--CCcceeEEeccCceeee
Confidence 999999999888888 999999999999999999999999999999999998877766432 23445567778886655
Q ss_pred Ee---CCCcEEEEEcCC
Q 022910 254 GS---KDGSVHMVNITT 267 (290)
Q Consensus 254 ~~---~dg~i~~wd~~~ 267 (290)
|- ++.++-+||..+
T Consensus 234 Gfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNN 250 (472)
T ss_pred ccccccccceeccCccc
Confidence 53 367899998654
No 180
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.84 E-value=2.7e-18 Score=134.46 Aligned_cols=195 Identities=19% Similarity=0.215 Sum_probs=157.7
Q ss_pred CEEEEEECCCCCcEEEEecCC--CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910 66 EVYSVACSPTDATLVATGGGD--DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 143 (290)
.|.-+-|+. .++|..+.+ +.+++++++....+..+. ...+|.++.++ .+.|+++-.+ .|+|||+++.+++.
T Consensus 48 ~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLh 120 (391)
T KOG2110|consen 48 SIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLH 120 (391)
T ss_pred EEEEeeccc---ceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEc--cceEEEEEcc-cEEEEecccceeeh
Confidence 455555654 355544433 458999999888888776 56789999994 4566666544 49999999999988
Q ss_pred EEec---CCCCEEEEEEcCCCCEEEEee--CCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCe-EEE
Q 022910 144 TLEG---PGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT-LRV 217 (290)
Q Consensus 144 ~~~~---~~~~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i 217 (290)
++.. +...+.++.+++.+.+++.-+ ..|.|.+||+.+.+++..+..|.+++.+++|+++|.+||+++..|+ |||
T Consensus 121 TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRV 200 (391)
T KOG2110|consen 121 TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRV 200 (391)
T ss_pred hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEE
Confidence 7754 334566666666677888743 4689999999999999999999999999999999999999999886 789
Q ss_pred EcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 022910 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (290)
Q Consensus 218 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 268 (290)
|.+.+|+++..++... ....|.+++|+|++++|++.+..++|++|.+...
T Consensus 201 f~v~~G~kl~eFRRG~-~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 201 FSVPEGQKLYEFRRGT-YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEcCCccEeeeeeCCc-eeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 9999999999998654 3677999999999999999999999999998653
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=1.9e-19 Score=153.69 Aligned_cols=203 Identities=22% Similarity=0.302 Sum_probs=159.6
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee--eee----eccccCCEEEEEECCCC--CEEEEEeCCCcEEEEc
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--ASE----IQGHKDSVSSLAFSMDG--QLLASGGLDGLVQIWD 135 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~----~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d 135 (290)
..+|+|+.|+|.+++++|.|..+|.|.+||+..+.. ... ...|..+++.+.|..+. .-|++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 468999999999999999999999999999988654 222 23588999999997644 4499999999999998
Q ss_pred CCCCc---------------------------------------------------------------eEEEEecCCCCE
Q 022910 136 PSSGN---------------------------------------------------------------LKCTLEGPGGGV 152 (290)
Q Consensus 136 ~~~~~---------------------------------------------------------------~~~~~~~~~~~i 152 (290)
++.-. ....+..|.++|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 64110 011223466789
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEECC-cccEEEeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEcCCCCeeeEEEe
Q 022910 153 EWVSWHPRGHIVLAGSEDSTVWMWNAD-RAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIR 230 (290)
Q Consensus 153 ~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 230 (290)
+++.++|-+..++..+.|.+++||... ...++..+..+...+++++||| ....|+++..+|.|.+||+..........
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s 481 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS 481 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccc
Confidence 999999977766666669999999988 6677777777888899999999 55678889999999999997654322222
Q ss_pred CCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 267 (290)
........+.+.|++.|++|++|...|++++|++..
T Consensus 482 -~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 482 -QKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred -ccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 112456778889999999999999999999999853
No 182
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=6.2e-20 Score=150.01 Aligned_cols=193 Identities=18% Similarity=0.306 Sum_probs=156.4
Q ss_pred cEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEE
Q 022910 78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW 157 (290)
Q Consensus 78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 157 (290)
..|+.++.||.+.|.+ +.++....+..|.+.+.+-.|+|+|.-|++++.||.|++|. ++|-+..++.....+|+|++|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 4677888999998887 45677777889999999999999999999999999999998 556655566666778999999
Q ss_pred cCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCccc
Q 022910 158 HPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237 (290)
Q Consensus 158 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 237 (290)
.|+.+.++.+.. +.+.|=.+.....+-+.+.|.+-|.++.|+|..+++++|+.|-..+|||.. |..+..-.. |.-
T Consensus 154 ~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~---~ey 228 (737)
T KOG1524|consen 154 APNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAA---EEY 228 (737)
T ss_pred CCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCCh---hcc
Confidence 998876665543 678888888887788899999999999999999999999999999999986 444333333 888
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 238 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
+|++++|.|+ ..++.++.. +.| --+...+.|..++|||||
T Consensus 229 ~ITSva~npd-~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DG 268 (737)
T KOG1524|consen 229 AITSVAFNPE-KDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADG 268 (737)
T ss_pred ceeeeeeccc-cceeeeeee-eee-----------ecCCCccceEEEEEcCCC
Confidence 9999999999 566666543 344 112345789999999997
No 183
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=7.6e-19 Score=147.25 Aligned_cols=209 Identities=19% Similarity=0.351 Sum_probs=165.3
Q ss_pred CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeee--------e--e------------------
Q 022910 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS--------E--I------------------ 103 (290)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--------~--~------------------ 103 (290)
..+..+..++||++.|+|++|+. ++.++|+|+.|..|.+|.-.-...++ - +
T Consensus 41 ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglW 119 (1081)
T KOG1538|consen 41 SDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLW 119 (1081)
T ss_pred CCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhcccc
Confidence 35778899999999999999999 88999999999999999864311110 0 0
Q ss_pred -------c--cccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEe---cCCCCEEEEEEcCCC-----CEEEE
Q 022910 104 -------Q--GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE---GPGGGVEWVSWHPRG-----HIVLA 166 (290)
Q Consensus 104 -------~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~i~~~~~~-----~~l~~ 166 (290)
. ....+|.+++|..+|++|+.|-.+|+|.|-+-. ++....+. +...+|.+++|+|.. ..+++
T Consensus 120 S~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 120 SPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred ChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence 0 123467788899999999999999999998643 44333333 366799999999953 47888
Q ss_pred eeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC
Q 022910 167 GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246 (290)
Q Consensus 167 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 246 (290)
.....++.+|.+. ++.+..-+...-...|+.+.|+|.+++.|+.|+.+.+|- +.|-.+.++.. ....|+.++..|
T Consensus 199 ~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~---~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 199 ADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGE---QDSWIWTVQAKP 273 (1081)
T ss_pred EeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccc---cceeEEEEEEcc
Confidence 9999999999885 444544444556678999999999999999999999995 45666666665 678899999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCC
Q 022910 247 DSTLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 247 ~~~~l~~~~~dg~i~~wd~~~ 267 (290)
++++++.|+.||+|..|++-.
T Consensus 274 NsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 274 NSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred CCceEEEEEccCeeehhhhHH
Confidence 999999999999999999743
No 184
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=4.3e-18 Score=145.15 Aligned_cols=226 Identities=19% Similarity=0.215 Sum_probs=158.2
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEec---CCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEE-eCCC
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGG---GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDG 129 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg 129 (290)
+...+.+..+...+.+.+|+| ++..|+..+ ....|.+|++.+++.... ....+.+..+.|+|+|++|+.. +.+|
T Consensus 188 g~~~~~lt~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g 265 (429)
T PRK03629 188 GYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTG 265 (429)
T ss_pred CCCCEEeecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCC
Confidence 344455666778899999999 555554332 245799999988754332 2233345568999999988765 3344
Q ss_pred --cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCC-C--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCC
Q 022910 130 --LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-S--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK 204 (290)
Q Consensus 130 --~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 204 (290)
.|++||+.+++..... .+...+....|+|+|+.|+.++.. + .|+++++.++... .+...........|+|+|+
T Consensus 266 ~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~ 343 (429)
T PRK03629 266 SLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGK 343 (429)
T ss_pred CcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCC
Confidence 5889999888765443 344567889999999988877654 3 4666677766543 3343444566789999999
Q ss_pred EEEEEeCC---CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCc---EEEEEcCCCcEEEEEccCC
Q 022910 205 TICTGSDD---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS---VHMVNITTGKVVSSLVSHT 278 (290)
Q Consensus 205 ~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~~wd~~~~~~~~~~~~~~ 278 (290)
+|+..+.+ ..|.+||+.++... .+... .......|+|||++|+.++.++. ++++++ +|+....+.+|.
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~----~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~ 417 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT----FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD 417 (429)
T ss_pred EEEEEEccCCCceEEEEECCCCCeE-EeCCC----CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC
Confidence 98876543 35889999887643 33321 12345789999999999888764 677777 577778888888
Q ss_pred CcEEEEEEecC
Q 022910 279 DSIECIGFSRS 289 (290)
Q Consensus 279 ~~v~~i~~s~d 289 (290)
+.+...+|+|-
T Consensus 418 ~~~~~p~Wsp~ 428 (429)
T PRK03629 418 GQVKFPAWSPY 428 (429)
T ss_pred CCcCCcccCCC
Confidence 89999999983
No 185
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=1.1e-18 Score=134.53 Aligned_cols=208 Identities=19% Similarity=0.341 Sum_probs=160.9
Q ss_pred EEEEEECCCCCcEEEEecCCCcEEEEEccCCe------------eeeeec-cccCCEEEEEEC-------CCCCEEEEEe
Q 022910 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGD------------WASEIQ-GHKDSVSSLAFS-------MDGQLLASGG 126 (290)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------------~~~~~~-~~~~~i~~~~~~-------~~~~~l~~~~ 126 (290)
...+.|+| ++..|++-+.|..+++|++...- ....+. .....|...+|. |+..++++.+
T Consensus 52 ~kgckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 45788999 77788888999999999985311 111111 134567777885 5677999999
Q ss_pred CCCcEEEEcCCCCceEEEEecCC-----CCEEEEEEcCCCCEEEEeeCCCeEEEEEC-CcccEEEe-------eecCCCC
Q 022910 127 LDGLVQIWDPSSGNLKCTLEGPG-----GGVEWVSWHPRGHIVLAGSEDSTVWMWNA-DRAAYLNM-------FSGHGSS 193 (290)
Q Consensus 127 ~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~-------~~~~~~~ 193 (290)
.+.-|++||.-+|+....+..-. ....+++|+|+|.+|++|.. ..|+++|+ |.++.... -.+..+-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 99999999999999888776522 25678999999999998876 78999999 55532211 1234677
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC-CcE
Q 022910 194 VTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNITT-GKV 270 (290)
Q Consensus 194 i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~-~~~ 270 (290)
|.+++|+| +...+++|+...++-||.-....++..+.+ |.+.|+.++|+++|+.|++|.. +-.|..||++. ..+
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg---h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG---HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc---cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 89999999 556899999999999998888888888876 8999999999999999999876 67899999985 445
Q ss_pred EEEEccCCC
Q 022910 271 VSSLVSHTD 279 (290)
Q Consensus 271 ~~~~~~~~~ 279 (290)
+..+..|.+
T Consensus 287 v~~L~rhv~ 295 (406)
T KOG2919|consen 287 VYALERHVG 295 (406)
T ss_pred hhhhhhhcc
Confidence 566665543
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.84 E-value=1.5e-17 Score=130.39 Aligned_cols=209 Identities=16% Similarity=0.227 Sum_probs=153.7
Q ss_pred cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec---cccCCEEEEEECCCCCEEEEEe--CCCcEEEEcCCCC
Q 022910 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDGQLLASGG--LDGLVQIWDPSSG 139 (290)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~ 139 (290)
.+|.++.++. +.|+++-. ..|+|||++..+++.++. .+...+.++.+++.+.+++.-+ ..|.|.|||+.+-
T Consensus 88 t~IL~VrmNr---~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 88 TSILAVRMNR---KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred CceEEEEEcc---ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 4666777764 34444443 459999999999988875 3445566676777777888643 3699999999999
Q ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCe-EEEEECCcccEEEeeecC--CCCeEEEEEcCCCCEEEEEeCCCeEE
Q 022910 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST-VWMWNADRAAYLNMFSGH--GSSVTCGDFTPDGKTICTGSDDATLR 216 (290)
Q Consensus 140 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~ 216 (290)
+.+..+..|.+++.+++|+++|.+||+++..|+ |||+.+..++.+..|+.. ...|.+++|+|++.+|++.+..++|+
T Consensus 164 ~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVH 243 (391)
T KOG2110|consen 164 QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVH 243 (391)
T ss_pred eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEE
Confidence 999999999999999999999999999999997 899999999999888743 34689999999999999999999999
Q ss_pred EEcCCCCeee----------------------------------EEEeCCCCcccCe-EEEEEc--CCCCEEEEEeCCCc
Q 022910 217 VWNPKSGENI----------------------------------HVIRGHPYHTEGL-TCLTIS--ADSTLALSGSKDGS 259 (290)
Q Consensus 217 i~d~~~~~~~----------------------------------~~~~~~~~~~~~v-~~~~~~--~~~~~l~~~~~dg~ 259 (290)
+|.+...... +.+.......+.. ..+.+. +...++.+++.||.
T Consensus 244 iFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~ 323 (391)
T KOG2110|consen 244 IFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGH 323 (391)
T ss_pred EEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCe
Confidence 9987532100 0000000011111 223333 46788999999999
Q ss_pred EEEEEcCC--CcEEEEEccC
Q 022910 260 VHMVNITT--GKVVSSLVSH 277 (290)
Q Consensus 260 i~~wd~~~--~~~~~~~~~~ 277 (290)
++.|.+.. |.....++.|
T Consensus 324 ~y~y~l~~~~gGec~lik~h 343 (391)
T KOG2110|consen 324 LYSYRLPPKEGGECALIKRH 343 (391)
T ss_pred EEEEEcCCCCCceeEEEEee
Confidence 99998764 4444444433
No 187
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.2e-19 Score=150.06 Aligned_cols=205 Identities=19% Similarity=0.196 Sum_probs=172.8
Q ss_pred eeeeccCCcCEEEEEECCCCCcEEEEecC---CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910 57 THIFSGHSDEVYSVACSPTDATLVATGGG---DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (290)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (290)
++..-.|..+|..+.|+. .|.+|++... ...|.|+++...+....|....+.|.++.|+|...+|++++. ..|+|
T Consensus 514 v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRi 591 (733)
T KOG0650|consen 514 VCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRI 591 (733)
T ss_pred eEEEEecCCccceeeeec-CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEE
Confidence 677778999999999999 7778877644 357999999888777777667788999999999999988875 67999
Q ss_pred EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 022910 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (290)
Q Consensus 134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 212 (290)
||+..+.++..+......|..++.+|.|..|+.|+.++.+..+|+.-. ++.+++..|...+++++|++.-.+|++|+.|
T Consensus 592 YdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD 671 (733)
T KOG0650|consen 592 YDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD 671 (733)
T ss_pred EehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence 999998887777777778999999999999999999999999999754 6778888899999999999999999999999
Q ss_pred CeEEEEc------CCCCeeeEEEeCCCCcccC----eEEEEEcCCCCEEEEEeCCCcEEEE
Q 022910 213 ATLRVWN------PKSGENIHVIRGHPYHTEG----LTCLTISADSTLALSGSKDGSVHMV 263 (290)
Q Consensus 213 g~i~i~d------~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~~w 263 (290)
|++.||- +..+..+..++...+|... |-.+.|+|...+|++++.||+|++|
T Consensus 672 gtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 672 GTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 9999983 3333344444444335444 8888999999999999999999998
No 188
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-17 Score=124.15 Aligned_cols=200 Identities=18% Similarity=0.269 Sum_probs=154.8
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee------eeee--cccc-----CCEEEEEECCCCC
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW------ASEI--QGHK-----DSVSSLAFSMDGQ 120 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------~~~~--~~~~-----~~i~~~~~~~~~~ 120 (290)
..++..+++|.++|+.++|+. .+|++|+ ||.|+=|..+.... .... .-|. -.|++|...|..+
T Consensus 52 k~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en 127 (325)
T KOG0649|consen 52 KLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN 127 (325)
T ss_pred CcceeeccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC
Confidence 445666699999999999984 3555655 59999998765321 1111 1122 3588999999888
Q ss_pred EEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec----------C
Q 022910 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG----------H 190 (290)
Q Consensus 121 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~ 190 (290)
.++.++.|+.++-||+++|+...++++|...+.++.--.....+++|+.||++++||+++++.++.+.. .
T Consensus 128 Si~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 128 SILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred cEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence 788888899999999999999999999999999999866677899999999999999999998876643 1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910 191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (290)
Q Consensus 191 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 266 (290)
...|.+++.+ ..+|++|+ ...+.+|.+++.++...+. ....+..+.|.. ..+++++..+.|.-|.+.
T Consensus 208 g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfp----ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 208 GKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFP----IPARVHLVDFVD--DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEe----cccceeEeeeec--ceEEEeccccceeeeeec
Confidence 3346666654 56788775 4569999999999988887 466788888854 467777777788888763
No 189
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.5e-19 Score=143.65 Aligned_cols=178 Identities=19% Similarity=0.279 Sum_probs=141.2
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec-
Q 022910 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG- 189 (290)
Q Consensus 111 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 189 (290)
.+++|+++|..+++++.||++|||+..+...+.....|.+.|.++.|+|+++.|++.+.+ ..+||+++++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999988888888888899999999999999999999999 999999999976666553
Q ss_pred -CCCCeEEEEEcCCC---CEE--EEEeCCCeEEEEcCCCCee--eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 022910 190 -HGSSVTCGDFTPDG---KTI--CTGSDDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (290)
Q Consensus 190 -~~~~i~~~~~~~~~---~~l--~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 261 (290)
.......+.|+.++ .++ +....-+.|+.|++..... .............|++++.+++|++++.|+.+|.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 23345667787765 332 3333455677766643322 111111111345799999999999999999999999
Q ss_pred EEEcCCCcEEEEEc-cCCCcEEEEEEecC
Q 022910 262 MVNITTGKVVSSLV-SHTDSIECIGFSRS 289 (290)
Q Consensus 262 ~wd~~~~~~~~~~~-~~~~~v~~i~~s~d 289 (290)
+++..+.+.++-.+ .|...|+.+.|+||
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPD 335 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCC
Confidence 99999988887765 79999999999998
No 190
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.83 E-value=2.1e-20 Score=150.14 Aligned_cols=214 Identities=14% Similarity=0.207 Sum_probs=184.0
Q ss_pred CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE
Q 022910 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL 145 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 145 (290)
.-+.+.|+. ++..++.|+..|.|-.+|+.++++...+. -...|.++.|..+.++||++- ...++|||- .|..++.+
T Consensus 131 GPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHCl 206 (545)
T KOG1272|consen 131 GPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCL 206 (545)
T ss_pred CCeeeeecC-CccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeeh
Confidence 446788888 77777788899999999999999988887 456789999998888888765 678999994 56667777
Q ss_pred ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee
Q 022910 146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN 225 (290)
Q Consensus 146 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 225 (290)
+.+. .+..+.|-|..-+|++++..|.++.-|+.+++.+..+....+.+..|+-+|-...+-+|...|+|.+|......+
T Consensus 207 k~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 207 KRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 7554 589999999999999999999999999999999999988889999999999888999999999999999998888
Q ss_pred eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910 226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR 288 (290)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~ 288 (290)
+..+.. |.++|.++++.++|+|++|.+.|..++|||++....+.++.. .-+...++||.
T Consensus 286 LvKiLc---H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq 344 (545)
T KOG1272|consen 286 LVKILC---HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ 344 (545)
T ss_pred HHHHHh---cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccc
Confidence 777766 899999999999999999999999999999999887777655 33455555554
No 191
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1e-18 Score=138.03 Aligned_cols=234 Identities=17% Similarity=0.272 Sum_probs=177.0
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC------Ceeeeeec-cccCCEEEEEECCCCCEEEEEe
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------GDWASEIQ-GHKDSVSSLAFSMDGQLLASGG 126 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~ 126 (290)
+-+.+-+.+|.+.|.++.|+. ++.+|++|+.|..+++|.+.. .+++.... .|...|.|++|...++++++|.
T Consensus 46 ~~~qKD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 46 PFCQKDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred chhhhhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence 445566789999999999999 688999999999999999864 23444333 4668999999999999999999
Q ss_pred CCCcEEEEcCCCCceEEEEecC--CCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc-EEE--eeecCCCCeEEEEEcC
Q 022910 127 LDGLVQIWDPSSGNLKCTLEGP--GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLN--MFSGHGSSVTCGDFTP 201 (290)
Q Consensus 127 ~dg~i~i~d~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~--~~~~~~~~i~~~~~~~ 201 (290)
.+++|.+.|+++.+.+..+... .+.|..+..+|..+.|++.+.++.|.+||.+..+ ... ...........+.|+|
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 9999999999999988877642 3589999999999999999999999999998765 221 1223455678888999
Q ss_pred -CCCEEEEEeCCCeEEEEcCCCCeee------------------------------------------------EEEeCC
Q 022910 202 -DGKTICTGSDDATLRVWNPKSGENI------------------------------------------------HVIRGH 232 (290)
Q Consensus 202 -~~~~l~~~~~dg~i~i~d~~~~~~~------------------------------------------------~~~~~~ 232 (290)
...+|++.+..+-+.+||.+..... ..++..
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 5677888888888999998743210 000000
Q ss_pred CC-----cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-----------------------cEEEEEccCCCcEEEE
Q 022910 233 PY-----HTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-----------------------KVVSSLVSHTDSIECI 284 (290)
Q Consensus 233 ~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-----------------------~~~~~~~~~~~~v~~i 284 (290)
.. ....+.+++|..+ ..+++|+.+-.|++|.+... +.+..+++|..-+..+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 00 1123556666544 34889999999999998531 2456778999999999
Q ss_pred EEecC
Q 022910 285 GFSRS 289 (290)
Q Consensus 285 ~~s~d 289 (290)
.|+|.
T Consensus 364 RF~~H 368 (609)
T KOG4227|consen 364 RFSQH 368 (609)
T ss_pred eecCC
Confidence 99874
No 192
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=8.1e-20 Score=152.18 Aligned_cols=203 Identities=18% Similarity=0.257 Sum_probs=155.2
Q ss_pred cCEEEEEECCCCCcEEEEecCCCcEEEEEccCC-------eeeeeeccccCCEEEEEECCC-CCEEEEEeCCCcEEEEcC
Q 022910 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDP 136 (290)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~ 136 (290)
..|+.+.|.|.+...||+++.||.|++|.+..+ .....+..|...|+.+.|+|- .+.|++++.|-+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 368999999999999999999999999999764 345567889999999999994 568999999999999999
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc-EEEeeec-CCCCeEEEEEcCCCCEEEEEeCC--
Q 022910 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSG-HGSSVTCGDFTPDGKTICTGSDD-- 212 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d-- 212 (290)
.+++....+.+|...|..++|+|+|+.+++.+.||+|++|.-+++. +++.-++ ....-..|.|.-+|+++++.+-|
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence 9999999999999999999999999999999999999999988764 3333322 12233557788899999887655
Q ss_pred --CeEEEEcCCCCe--eeEEEeCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc
Q 022910 213 --ATLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGK 269 (290)
Q Consensus 213 --g~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~ 269 (290)
.+|.+||..+.. .+.+.... ....+---.+.+| +-++++|-.|..|++|.+-...
T Consensus 788 SeRQv~~Y~Aq~l~~~pl~t~~lD--vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 788 SERQVQMYDAQTLDLRPLYTQVLD--VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred chhhhhhhhhhhccCCcceeeeec--ccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 468899876543 22222111 0111111123444 4467788889999999986543
No 193
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=9.5e-18 Score=143.59 Aligned_cols=225 Identities=19% Similarity=0.235 Sum_probs=157.2
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecC---CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEE-EeCCC
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGG---DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS-GGLDG 129 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg 129 (290)
....+.+..|...+.+.+|+| ++..|+..+. ...|++|++.+++... +..+.+...++.|+|+|++|+. .+.+|
T Consensus 193 g~~~~~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 193 GYNPQTILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred CCCceEeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCC
Confidence 444566777888999999999 5555555442 3469999998776533 3334445567899999997764 45555
Q ss_pred --cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC-CC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCC
Q 022910 130 --LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK 204 (290)
Q Consensus 130 --~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 204 (290)
.|++|++.+++.. .+..+.......+|+|+++.|+.++. .| .|+++++.+++..+ +..........+|+|+|+
T Consensus 271 ~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~ 348 (433)
T PRK04922 271 NPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGK 348 (433)
T ss_pred CceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCC
Confidence 5999999888754 44445445567899999998887764 34 47778887765433 322334455789999999
Q ss_pred EEEEEeCCC---eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEEccCC
Q 022910 205 TICTGSDDA---TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNITTGKVVSSLVSHT 278 (290)
Q Consensus 205 ~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~ 278 (290)
+|+..+.++ .|.+||+.+++.. .+.. ........|+|+|++|+..+.+ +.|+++++. +.....+..+.
T Consensus 349 ~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~----~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~ 422 (433)
T PRK04922 349 KIAMVHGSGGQYRIAVMDLSTGSVR-TLTP----GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSAD 422 (433)
T ss_pred EEEEEECCCCceeEEEEECCCCCeE-ECCC----CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCC
Confidence 998765443 6999999887654 3332 2234467899999988776653 468888884 55667777667
Q ss_pred CcEEEEEEec
Q 022910 279 DSIECIGFSR 288 (290)
Q Consensus 279 ~~v~~i~~s~ 288 (290)
+.+...+|+|
T Consensus 423 g~~~~p~wsp 432 (433)
T PRK04922 423 GEVREPAWSP 432 (433)
T ss_pred CCCCCCccCC
Confidence 7888999998
No 194
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.82 E-value=1.6e-18 Score=131.82 Aligned_cols=199 Identities=19% Similarity=0.270 Sum_probs=154.6
Q ss_pred cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe---eeeeeccccCCEEEEEECCCCC-EEEEEeCCCcEEEEcCC
Q 022910 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPS 137 (290)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~ 137 (290)
.+..++++..|+..+.++|.+++-|-+..|||++++. ....+-.|...|..++|...+. .||+.+.||++++||++
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 3567999999999899999999999999999999863 3556778999999999998654 79999999999999998
Q ss_pred CCceEEEEe---cCCCCEEEEEEcCC-CCEEEEeeCC-CeEEEEECCcc-cEEEeeecCCCCeEEEEEcC-CCCEEEEEe
Q 022910 138 SGNLKCTLE---GPGGGVEWVSWHPR-GHIVLAGSED-STVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGS 210 (290)
Q Consensus 138 ~~~~~~~~~---~~~~~i~~i~~~~~-~~~l~~~~~d-g~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~ 210 (290)
..+.-..+. ....+..-++|+++ -+++|+-..| ..|.|.|+|.. .++.++.+|.+.|.+++|.| ....|.+++
T Consensus 228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG 307 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG 307 (364)
T ss_pred ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC
Confidence 775544332 22457888999885 4577765554 46999999975 57889999999999999999 557889999
Q ss_pred CCCeEEEEcCCCCee---eEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 022910 211 DDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHM 262 (290)
Q Consensus 211 ~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~ 262 (290)
.|.++.+||+.+.-. ...+.... ....|+.+.|++ .+..++.+.. +.+.+
T Consensus 308 DD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 308 DDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred CcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 999999999975332 01111111 467899999997 5667777654 34433
No 195
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.81 E-value=9.1e-19 Score=143.18 Aligned_cols=138 Identities=25% Similarity=0.422 Sum_probs=120.5
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccC--------------C--------------eeeeeeccccCCEEEEEE
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--------------G--------------DWASEIQGHKDSVSSLAF 115 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------------~--------------~~~~~~~~~~~~i~~~~~ 115 (290)
+..|+|+.|-|.+..+++++-.+|.+++|+... + .++..+....+.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 368999999997778888888999999997631 0 011112223457889999
Q ss_pred CCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeE
Q 022910 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVT 195 (290)
Q Consensus 116 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~ 195 (290)
+|+|++||+.+.||.++||+..+.+++..++..-+...|++|+|||++|++|+.|--|.||.+...+.+.+-++|++.|.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS 378 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence 99999999999999999999999999888888888899999999999999999999999999999999999999999999
Q ss_pred EEEEcC
Q 022910 196 CGDFTP 201 (290)
Q Consensus 196 ~~~~~~ 201 (290)
.++|.|
T Consensus 379 ~VaFDp 384 (636)
T KOG2394|consen 379 VVAFDP 384 (636)
T ss_pred eEeecc
Confidence 999987
No 196
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=9.6e-19 Score=143.13 Aligned_cols=219 Identities=17% Similarity=0.275 Sum_probs=163.5
Q ss_pred cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEE-EEECC-------CCCEEEEEeCCCcEEE
Q 022910 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSS-LAFSM-------DGQLLASGGLDGLVQI 133 (290)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~-~~~~~-------~~~~l~~~~~dg~i~i 133 (290)
.|...|.|+.|+. ....+.+ +.|..+.+|.-.+......+.....-+.. +-.-+ ....|+.++.||.+.|
T Consensus 12 r~~e~vc~v~w~~-~eei~~~-~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS-NEEIYFV-SDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeecccc-cceEEEe-ccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 5667778999987 4445544 45666666654443322222211111111 11111 2347888899999999
Q ss_pred EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 022910 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (290)
Q Consensus 134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 213 (290)
.+ +.++....+..|.+.+.+-.|+|+|.-|++++.||.|++|.- ++....++.....+|+|++|.|+.+.++-+ ..+
T Consensus 90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~ 166 (737)
T KOG1524|consen 90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC-QGG 166 (737)
T ss_pred ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe-cCC
Confidence 87 556777788899999999999999999999999999999984 555555555567899999999987666554 346
Q ss_pred eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d 289 (290)
.+.|=-+.....+-..+. |.+-|-++.|++...++++|+.|-..++||. -|..+..-..|.-+|++++|.|+
T Consensus 167 h~~IKpL~~n~k~i~WkA---HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRA---HDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE 238 (737)
T ss_pred eEEEeecccccceeEEec---cCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc
Confidence 677777766666666666 8899999999999999999999999999996 57888888889999999999997
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=1.5e-18 Score=133.48 Aligned_cols=186 Identities=18% Similarity=0.259 Sum_probs=152.1
Q ss_pred cccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc---eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCc-
Q 022910 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN---LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR- 180 (290)
Q Consensus 105 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~- 180 (290)
....+|+|.+|+++...+|++.....|.||.....+ ...+++.|...|+.++|+|..+.|++++.|..-++|....
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 345789999999999999999999999999987665 5678889999999999999999999999999999999843
Q ss_pred c--cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeC-CCCcccCeEEEEEcCCCCEEEEEeCC
Q 022910 181 A--AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG-HPYHTEGLTCLTISADSTLALSGSKD 257 (290)
Q Consensus 181 ~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d 257 (290)
+ ++...+..++...+++.|+|.++.|++|+.-..|.||-+...+.-..-+. ...+.+.|+++.|+|++-+|++|+.|
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 3 44555666889999999999999999999999999998765443211110 11267889999999999999999999
Q ss_pred CcEEEEEcC------------------CCcEEEEEccCCCcEEEEEEecCC
Q 022910 258 GSVHMVNIT------------------TGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 258 g~i~~wd~~------------------~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
+..|++..- -|.++..+....+.|..+.|+|+|
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG 218 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG 218 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC
Confidence 999999741 133455554556899999999986
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=8.3e-17 Score=133.38 Aligned_cols=230 Identities=13% Similarity=0.185 Sum_probs=151.2
Q ss_pred ceeeeccCCcCEEEEEECCCCCcEE-EEecCCCcEEEEEccC-Cee--eeeeccccCCEEEEEECCCCCEEEEEeC-CCc
Q 022910 56 STHIFSGHSDEVYSVACSPTDATLV-ATGGGDDKGFFWRINQ-GDW--ASEIQGHKDSVSSLAFSMDGQLLASGGL-DGL 130 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~ 130 (290)
.+..+. +.+....++++| ++++| +++..++.|.+|++.. ++. +.... .......++|+|++++|++++. ++.
T Consensus 27 ~~~~~~-~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~ 103 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANC 103 (330)
T ss_pred eeeEEe-cCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCe
Confidence 334443 345677899999 55554 4455688999999973 332 22222 2335678999999998888764 889
Q ss_pred EEEEcCCCCc----eEEEEecCCCCEEEEEEcCCCCEEEEee-CCCeEEEEECCcccEEEe-----ee-cCCCCeEEEEE
Q 022910 131 VQIWDPSSGN----LKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLNM-----FS-GHGSSVTCGDF 199 (290)
Q Consensus 131 i~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~-----~~-~~~~~i~~~~~ 199 (290)
|.+|++.+.. .+..+. +.....+++++|+++++++++ .++.|.+||+.+...+.. .. ........++|
T Consensus 104 v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~ 182 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF 182 (330)
T ss_pred EEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence 9999986432 222222 223467789999999886555 568999999976332211 11 12345678999
Q ss_pred cCCCCEEEEEeC-CCeEEEEcCCC--C--eeeEEEeCCCC---cccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCc-
Q 022910 200 TPDGKTICTGSD-DATLRVWNPKS--G--ENIHVIRGHPY---HTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGK- 269 (290)
Q Consensus 200 ~~~~~~l~~~~~-dg~i~i~d~~~--~--~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~- 269 (290)
+|++++++++.. ++.|.+|++.. + +.+..+...+. .......+.++|++++|+++.. ++.|.+|++....
T Consensus 183 ~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~ 262 (330)
T PRK11028 183 HPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS 262 (330)
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC
Confidence 999999988776 89999999973 2 22333332111 1122346889999999999864 7899999986432
Q ss_pred ---EEEEEccCCCcEEEEEEecCC
Q 022910 270 ---VVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 270 ---~~~~~~~~~~~v~~i~~s~d~ 290 (290)
.+..+.. ....+.++|+|||
T Consensus 263 ~~~~~~~~~~-~~~p~~~~~~~dg 285 (330)
T PRK11028 263 VLSFEGHQPT-ETQPRGFNIDHSG 285 (330)
T ss_pred eEEEeEEEec-cccCCceEECCCC
Confidence 2333332 2355678898886
No 199
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=2.4e-17 Score=140.72 Aligned_cols=225 Identities=20% Similarity=0.208 Sum_probs=152.2
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecC---CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEE-EeCCC
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGG---DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS-GGLDG 129 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg 129 (290)
....+.+..+...+.+.+|+| +++.|+..+. ...|.+|++.+++... +....+.+....|+|+|+.|+. .+.+|
T Consensus 185 G~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g 262 (427)
T PRK02889 185 GQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDG 262 (427)
T ss_pred CCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCC
Confidence 344455667888999999999 5555554432 2459999998876543 3334455678999999998764 56677
Q ss_pred cEEEEc--CCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC-CCeEEEE--ECCcccEEEeeecCCCCeEEEEEcCCCC
Q 022910 130 LVQIWD--PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMW--NADRAAYLNMFSGHGSSVTCGDFTPDGK 204 (290)
Q Consensus 130 ~i~i~d--~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 204 (290)
...||. +..+. ...+..+.+......|+|+|+.|+..+. .|...+| ++.++.... +...........|+|+|+
T Consensus 263 ~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~ 340 (427)
T PRK02889 263 NSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGK 340 (427)
T ss_pred CceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCC
Confidence 766654 44444 4445445555667899999998887654 3554555 555554322 222233345678999999
Q ss_pred EEEEEeCCC---eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEEccCC
Q 022910 205 TICTGSDDA---TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSHT 278 (290)
Q Consensus 205 ~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~ 278 (290)
+|+..+.++ .|.+||+.+++... +.. ........|+|+|++|+.++.++ .+++.++ +++....+..+.
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~----~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~ 414 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVTA-LTD----TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG 414 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeEE-ccC----CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence 998776554 69999998876533 322 12345779999999888877544 4666676 577777777777
Q ss_pred CcEEEEEEec
Q 022910 279 DSIECIGFSR 288 (290)
Q Consensus 279 ~~v~~i~~s~ 288 (290)
+.+...+|+|
T Consensus 415 g~~~~p~wsp 424 (427)
T PRK02889 415 GDVREPSWGP 424 (427)
T ss_pred CCCCCCccCC
Confidence 8889999998
No 200
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.8e-17 Score=130.80 Aligned_cols=225 Identities=13% Similarity=0.166 Sum_probs=174.9
Q ss_pred ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe----eeeeeccccCCEEEEEECCCCCE-EEEEeCC--
Q 022910 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSVSSLAFSMDGQL-LASGGLD-- 128 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d-- 128 (290)
.+....+.+++|..++... + .|++|-.+|.+.+|....+. .+..+..+ ..+..|.-++...+ +++|+..
T Consensus 97 ~~~~~~l~~~~I~gl~~~d--g-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~ 172 (412)
T KOG3881|consen 97 DAKTVSLGTKSIKGLKLAD--G-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENI 172 (412)
T ss_pred cccccccccccccchhhcC--C-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcc
Confidence 3446667788888888763 3 45577888999999988433 22233322 45666766766554 5558887
Q ss_pred CcEEEEcCCCCceEEEEecCC---------CCEEEEEEcCC--CCEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEE
Q 022910 129 GLVQIWDPSSGNLKCTLEGPG---------GGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTC 196 (290)
Q Consensus 129 g~i~i~d~~~~~~~~~~~~~~---------~~i~~i~~~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~ 196 (290)
..+.|||+...+.+.+-+... -.++.+.|-+. ...|++++.-+.+++||.+.+ +++..+.-...++++
T Consensus 173 n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~ 252 (412)
T KOG3881|consen 173 NELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISS 252 (412)
T ss_pred cceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCccee
Confidence 889999999886554433211 24677888887 789999999999999999875 578888888899999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEE-EeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910 197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHV-IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (290)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 275 (290)
+...|.++++++|..-|.+..||++.++.... +.+ ..+.|+++..+|.+++|++++-|..|||+|+.+.+++....
T Consensus 253 ~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg---~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 253 TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG---ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred eeecCCCcEEEEecccchhheecccCceeeccccCC---ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence 99999999999999999999999999988766 555 67889999999999999999999999999999988776654
Q ss_pred cCCCcEEEEEEec
Q 022910 276 SHTDSIECIGFSR 288 (290)
Q Consensus 276 ~~~~~v~~i~~s~ 288 (290)
. ...+++|.+.+
T Consensus 330 v-Ks~lt~il~~~ 341 (412)
T KOG3881|consen 330 V-KSRLTFILLRD 341 (412)
T ss_pred h-hccccEEEecC
Confidence 3 45566666644
No 201
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.80 E-value=3.7e-18 Score=139.64 Aligned_cols=198 Identities=20% Similarity=0.302 Sum_probs=147.2
Q ss_pred CcEEEEEccCCeeee-----eeccccCCEEEEEEC-----CCCCEEEEEeCCCcEEEEcCCCCceEEEEe----cCCCCE
Q 022910 87 DKGFFWRINQGDWAS-----EIQGHKDSVSSLAFS-----MDGQLLASGGLDGLVQIWDPSSGNLKCTLE----GPGGGV 152 (290)
Q Consensus 87 g~i~iw~~~~~~~~~-----~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~i 152 (290)
..+++|+...+.... .+.... ...|-.|+ |.+--+++|-..|.|.+.+....+....+. .....+
T Consensus 144 ~~lyv~~~~g~~~~~~pi~k~~y~gt-~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsv 222 (636)
T KOG2394|consen 144 RELYVYSYRGAADLSKPIDKREYKGT-SPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSV 222 (636)
T ss_pred CeEEEEEccCcchhccchhhhcccCC-CCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccce
Confidence 568888877432111 111112 22344452 445568888888999999876643322221 133679
Q ss_pred EEEEEcCCC-CEEEEeeCCCeEEEEECCcc----------------------------cEEEeeecCCCCeEEEEEcCCC
Q 022910 153 EWVSWHPRG-HIVLAGSEDSTVWMWNADRA----------------------------AYLNMFSGHGSSVTCGDFTPDG 203 (290)
Q Consensus 153 ~~i~~~~~~-~~l~~~~~dg~i~i~d~~~~----------------------------~~~~~~~~~~~~i~~~~~~~~~ 203 (290)
+|+.|-|.+ ..++++-.+|.+++||..-. .++..+..-.+.|..++|+|+|
T Consensus 223 T~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG 302 (636)
T KOG2394|consen 223 TCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG 302 (636)
T ss_pred EEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCC
Confidence 999999854 46777778999999976321 0111222234578889999999
Q ss_pred CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEE
Q 022910 204 KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIEC 283 (290)
Q Consensus 204 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 283 (290)
++||+.+.||.+||||..+.+.+..++. .-+...|++|+|||+||++|+.|..|.||.+..++++..-++|+.+|+.
T Consensus 303 ~~LA~VSqDGfLRvF~fdt~eLlg~mkS---YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~ 379 (636)
T KOG2394|consen 303 KYLATVSQDGFLRIFDFDTQELLGVMKS---YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSV 379 (636)
T ss_pred ceEEEEecCceEEEeeccHHHHHHHHHh---hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceee
Confidence 9999999999999999998887776665 5678999999999999999999999999999999999999999999999
Q ss_pred EEEec
Q 022910 284 IGFSR 288 (290)
Q Consensus 284 i~~s~ 288 (290)
++|.|
T Consensus 380 VaFDp 384 (636)
T KOG2394|consen 380 VAFDP 384 (636)
T ss_pred Eeecc
Confidence 99986
No 202
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=4.8e-18 Score=127.54 Aligned_cols=206 Identities=20% Similarity=0.300 Sum_probs=156.0
Q ss_pred Cceeeec-cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee--------------e----------------
Q 022910 55 DSTHIFS-GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--------------I---------------- 103 (290)
Q Consensus 55 ~~~~~~~-~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------------~---------------- 103 (290)
.....++ .|...|+.+.-.| + ..+.+-+.|+.+.+|++.-...+.. +
T Consensus 46 r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~r 123 (323)
T KOG0322|consen 46 RDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSR 123 (323)
T ss_pred ccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCc
Confidence 3444555 5778899999888 4 3466788999999999864221110 0
Q ss_pred -----------------------ccccCCEEEEEECC-CCC--EEEEEeCCCcEEEEcCCCCc----------eEEEEec
Q 022910 104 -----------------------QGHKDSVSSLAFSM-DGQ--LLASGGLDGLVQIWDPSSGN----------LKCTLEG 147 (290)
Q Consensus 104 -----------------------~~~~~~i~~~~~~~-~~~--~l~~~~~dg~i~i~d~~~~~----------~~~~~~~ 147 (290)
.+..+.+.|..+.. .+. ++++|..+|.+.+||+.++. .......
T Consensus 124 gsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~as 203 (323)
T KOG0322|consen 124 GSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNAS 203 (323)
T ss_pred ccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhh
Confidence 01233455555432 233 57778889999999999973 3334456
Q ss_pred CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc----cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC
Q 022910 148 PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA----AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223 (290)
Q Consensus 148 ~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 223 (290)
|..++.++.|.+.-..=++|+.+..+.+|.+... +...........|..+..-|+++.+++++.|+.||||..++.
T Consensus 204 h~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 204 HKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred ccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC
Confidence 8889999999987777788888888999988643 111222334456888899999999999999999999999999
Q ss_pred eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910 224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (290)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~ 265 (290)
+++..++- |...|++++|+|+..++|+++.|++|.+|++
T Consensus 284 ~pLAVLky---Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 NPLAVLKY---HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred Cchhhhhh---hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99888876 8899999999999999999999999999986
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4e-17 Score=140.59 Aligned_cols=222 Identities=17% Similarity=0.255 Sum_probs=181.4
Q ss_pred CCCceeeeccCCcCEEEEEECCCCC--cEEEEecCCCcEEEEEccCCeeeeee---------------------------
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDA--TLVATGGGDDKGFFWRINQGDWASEI--------------------------- 103 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~--------------------------- 103 (290)
...+++.+.+|..+++.+.+.|... .++.+++.+|.|++|+...+.+++++
T Consensus 46 Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~ 125 (792)
T KOG1963|consen 46 TGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVE 125 (792)
T ss_pred hHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecc
Confidence 4667888999999999999998655 46779999999999998765443332
Q ss_pred ----------------------------------------------------------------------------cccc
Q 022910 104 ----------------------------------------------------------------------------QGHK 107 (290)
Q Consensus 104 ----------------------------------------------------------------------------~~~~ 107 (290)
..|.
T Consensus 126 ~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Ht 205 (792)
T KOG1963|consen 126 DYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHT 205 (792)
T ss_pred cceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhc
Confidence 1255
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEcCCC--C--ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE
Q 022910 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSS--G--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY 183 (290)
Q Consensus 108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 183 (290)
-.+++.+++|+++++|++..||.|.+|.--. + .....+.-|...|.+++|+++|.+|++|+..|.+.+|.+.+++
T Consensus 206 f~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~- 284 (792)
T KOG1963|consen 206 FNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK- 284 (792)
T ss_pred ccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-
Confidence 6689999999999999999999999996433 1 2345667788899999999999999999999999999999988
Q ss_pred EEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCc--------ccCeEEEEEcCCCCEEEEEe
Q 022910 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH--------TEGLTCLTISADSTLALSGS 255 (290)
Q Consensus 184 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~ 255 (290)
.+-+....++|..+.++|++.+.+....|..|.+..+.+......+.+.... .+-.+.++++|..+.++-.+
T Consensus 285 kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~ 364 (792)
T KOG1963|consen 285 KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG 364 (792)
T ss_pred cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecC
Confidence 5555667899999999999999999999999999988766555555444322 44577889999777888888
Q ss_pred CCCcEEEEEcCCCcEEEEEc
Q 022910 256 KDGSVHMVNITTGKVVSSLV 275 (290)
Q Consensus 256 ~dg~i~~wd~~~~~~~~~~~ 275 (290)
..|.|.+||+.+.+.+..+.
T Consensus 365 ~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 365 HPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred CCceEEEEeccccceeeeEE
Confidence 99999999999988777665
No 204
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=1.6e-16 Score=136.19 Aligned_cols=225 Identities=15% Similarity=0.174 Sum_probs=157.8
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEec---CCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEE-EEeCC
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGG---GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLD 128 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d 128 (290)
.+...+.+..|...+.+.+|+| +++.|+..+ .+..|.+|++.+++.. .+..+.+.+...+|+|+|+.|+ +.+.+
T Consensus 190 dg~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~ 267 (435)
T PRK05137 190 DGANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQG 267 (435)
T ss_pred CCCCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecC
Confidence 3455667888899999999999 555555443 2468999999887653 3444666778899999999776 44555
Q ss_pred Cc--EEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC-C--CeEEEEECCcccEEEeeecCCCCeEEEEEcCCC
Q 022910 129 GL--VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203 (290)
Q Consensus 129 g~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 203 (290)
+. |++|++.++... .+..+.+......|+|+++.|+..+. + ..|++|++.++... .+......+....|+|+|
T Consensus 268 g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG 345 (435)
T PRK05137 268 GNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRG 345 (435)
T ss_pred CCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCC
Confidence 54 777898877654 45545555678999999998887764 3 36889998766543 333344556778899999
Q ss_pred CEEEEEeCC---CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCcEEEEE
Q 022910 204 KTICTGSDD---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD------GSVHMVNITTGKVVSSL 274 (290)
Q Consensus 204 ~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~ 274 (290)
++|+..+.+ ..|.+||+.++.. ..+.. ...+..+.|+|+|++|+..+.+ ..++++++..+.. ..+
T Consensus 346 ~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~----~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l 419 (435)
T PRK05137 346 DLIAFTKQGGGQFSIGVMKPDGSGE-RILTS----GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REV 419 (435)
T ss_pred CEEEEEEcCCCceEEEEEECCCCce-EeccC----CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEc
Confidence 999876543 3688899865543 33332 2246678999999988775543 3588888866554 455
Q ss_pred ccCCCcEEEEEEec
Q 022910 275 VSHTDSIECIGFSR 288 (290)
Q Consensus 275 ~~~~~~v~~i~~s~ 288 (290)
.. .+.+...+|+|
T Consensus 420 ~~-~~~~~~p~Wsp 432 (435)
T PRK05137 420 PT-PGDASDPAWSP 432 (435)
T ss_pred cC-CCCccCcccCC
Confidence 53 45678888987
No 205
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.9e-18 Score=132.94 Aligned_cols=168 Identities=25% Similarity=0.446 Sum_probs=132.6
Q ss_pred CEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcC--CCCEEEEeeCCCeEEEEECCcccEEEee--ecCC-CCe
Q 022910 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMF--SGHG-SSV 194 (290)
Q Consensus 120 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~-~~i 194 (290)
..+|++...|.|++||..+++.+..++++...+..+.|.. ....+.+++.||+|++||+|......++ ..++ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4688888899999999999999999999999999999977 5678999999999999999987655443 3333 466
Q ss_pred EEEEEcCCCCEEEEEeC----CCeEEEEcCCCCee-eEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q 022910 195 TCGDFTPDGKTICTGSD----DATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTG 268 (290)
Q Consensus 195 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~ 268 (290)
.+++..-.++.+++|+. +..|.+||.|..+. +..+... |...|++++|+| +.++|++|+.||.|.+||++..
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS--H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES--HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh--ccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 77777667788888753 67899999998776 5555433 889999999999 7789999999999999999754
Q ss_pred c---EEEEEccCCCcEEEEEEecC
Q 022910 269 K---VVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 269 ~---~~~~~~~~~~~v~~i~~s~d 289 (290)
. .+...-.|...|-++.|+.+
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~ 222 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSK 222 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecC
Confidence 2 12222234566777777654
No 206
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.4e-16 Score=123.44 Aligned_cols=203 Identities=18% Similarity=0.332 Sum_probs=144.7
Q ss_pred CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC----ee----------eeeeccccCCEEEEEECCCCCEEEEEeC-
Q 022910 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DW----------ASEIQGHKDSVSSLAFSMDGQLLASGGL- 127 (290)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~----------~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 127 (290)
.+..|+|++|-|.++..|+.|+.. -|.||..... +. +...++| .+|++|.|.++|..+++++.
T Consensus 139 sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG 216 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence 456899999999888899888864 5889987531 11 1222344 68999999999999999876
Q ss_pred CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEE
Q 022910 128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207 (290)
Q Consensus 128 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 207 (290)
+..|.|||..++..+.......+.++-+.|+|++.+|++++-|+..++|...............+.|...+|+|.|++|+
T Consensus 217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEE
Confidence 67899999999987766655566799999999999999999999999996654433333333455899999999998876
Q ss_pred EEeCCCeEEEEcCCCCe------------eeEEE---------eCCCCcccCeEEEEEcCCCCEEEEEeCCC--------
Q 022910 208 TGSDDATLRVWNPKSGE------------NIHVI---------RGHPYHTEGLTCLTISADSTLALSGSKDG-------- 258 (290)
Q Consensus 208 ~~~~dg~i~i~d~~~~~------------~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------- 258 (290)
..+.. .-++|.+.-.. ....+ .+.....+.+.+++|.|.|.+||+.-..+
T Consensus 297 f~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~ 375 (445)
T KOG2139|consen 297 FACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKL 375 (445)
T ss_pred EEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhh
Confidence 54432 22344332110 00000 11112356789999999999999876543
Q ss_pred cEEEEEcCCC
Q 022910 259 SVHMVNITTG 268 (290)
Q Consensus 259 ~i~~wd~~~~ 268 (290)
.|.+||.+..
T Consensus 376 ~i~~fdtr~s 385 (445)
T KOG2139|consen 376 HISRFDTRKS 385 (445)
T ss_pred hhhhhccccc
Confidence 4777887643
No 207
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=2.8e-16 Score=130.20 Aligned_cols=219 Identities=11% Similarity=0.153 Sum_probs=142.7
Q ss_pred CEEEEEECCCCCcEEEEecCCCcEEEEEccCCe----eeeeeccccCCEEEEEECCCCCEEEEEe-CCCcEEEEcCCCCc
Q 022910 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWDPSSGN 140 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~ 140 (290)
....++|+|++..++++...++.|.+|++.+.. .+..+. +.....+++++|+++++++++ .++.|.+|++.+..
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 457899999554455555568999999997432 222222 234467889999999886554 56999999997643
Q ss_pred eEE-----EEe-cCCCCEEEEEEcCCCCEEEEeeC-CCeEEEEECCc--c--cEEEeeecC------CCCeEEEEEcCCC
Q 022910 141 LKC-----TLE-GPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADR--A--AYLNMFSGH------GSSVTCGDFTPDG 203 (290)
Q Consensus 141 ~~~-----~~~-~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~--~--~~~~~~~~~------~~~i~~~~~~~~~ 203 (290)
.+. ... ........++|+|++++++++.. ++.|.+|++.. + +.+..+... ......+.++|++
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 221 111 12334678999999999988876 89999999973 2 223333221 1223468899999
Q ss_pred CEEEEEeC-CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcC--CCc--EEEEEccC
Q 022910 204 KTICTGSD-DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNIT--TGK--VVSSLVSH 277 (290)
Q Consensus 204 ~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~--~~~--~~~~~~~~ 277 (290)
++|+++.. ++.|.+|++........+............+.++|+|++|+++.. +++|.+|++. ++. .+..+..
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~- 318 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAV- 318 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcccccc-
Confidence 99998854 789999998654321122111111234567899999999998776 8899999874 343 2344433
Q ss_pred CCcEEEEEE
Q 022910 278 TDSIECIGF 286 (290)
Q Consensus 278 ~~~v~~i~~ 286 (290)
.....+++|
T Consensus 319 g~~P~~~~~ 327 (330)
T PRK11028 319 GQGPMWVSV 327 (330)
T ss_pred CCCceEEEE
Confidence 334445544
No 208
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=7.6e-17 Score=138.91 Aligned_cols=227 Identities=21% Similarity=0.312 Sum_probs=168.2
Q ss_pred cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC--C--eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC
Q 022910 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--G--DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (290)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 137 (290)
.|...++|.+++| .++++|+|..||.|.+|.--. . .....+.-|...|.+++|+++|.+|++|+..|.+.+|.+.
T Consensus 203 ~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 4777799999999 889999999999999997543 1 2234566788999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec-----------CCCCeEEEEEcCCCCEE
Q 022910 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-----------HGSSVTCGDFTPDGKTI 206 (290)
Q Consensus 138 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l 206 (290)
+++ .+-+..-.++|..+.++|++.+.+....|..|.+....+......+.+ ..+-.+.++++|..+.+
T Consensus 282 T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 282 TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 998 555666778999999999999999999999999998765544333332 23345677888876777
Q ss_pred EEEeCCCeEEEEcCCCCeeeEEEeCC------------------------------------------------------
Q 022910 207 CTGSDDATLRVWNPKSGENIHVIRGH------------------------------------------------------ 232 (290)
Q Consensus 207 ~~~~~dg~i~i~d~~~~~~~~~~~~~------------------------------------------------------ 232 (290)
+-.+..|.|.+||+.+...+..+...
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 77788888888887654332221100
Q ss_pred -----------CCcccCeEEEEEcC-CC-CEEEEEeCCCcEEEEEcCCCc----------EEEEEccCCCcEEEEEEecC
Q 022910 233 -----------PYHTEGLTCLTISA-DS-TLALSGSKDGSVHMVNITTGK----------VVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 233 -----------~~~~~~v~~~~~~~-~~-~~l~~~~~dg~i~~wd~~~~~----------~~~~~~~~~~~v~~i~~s~d 289 (290)
..|...+...++.+ .. ...++++.||.+++|-+...+ +...-.-|..+++.++|+.|
T Consensus 441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 441 SKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD 520 (792)
T ss_pred cceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence 01444444444443 22 378899999999999984322 22221237789999999988
Q ss_pred C
Q 022910 290 E 290 (290)
Q Consensus 290 ~ 290 (290)
|
T Consensus 521 G 521 (792)
T KOG1963|consen 521 G 521 (792)
T ss_pred C
Confidence 7
No 209
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.78 E-value=1.1e-16 Score=121.38 Aligned_cols=156 Identities=16% Similarity=0.270 Sum_probs=114.9
Q ss_pred EEEEECCCCCEEEEEeC----------CCcEEEEcCCC-CceEEEEec-CCCCEEEEEEcCCCCEEEEe--eCCCeEEEE
Q 022910 111 SSLAFSMDGQLLASGGL----------DGLVQIWDPSS-GNLKCTLEG-PGGGVEWVSWHPRGHIVLAG--SEDSTVWMW 176 (290)
Q Consensus 111 ~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~-~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~--~~dg~i~i~ 176 (290)
..+.|+|+|++|++-.. -+...+|-++. +.....+.. ..++|.+++|+|+++.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987665433 13345555522 233444433 34579999999999987654 456799999
Q ss_pred ECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEE
Q 022910 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD---DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS 253 (290)
Q Consensus 177 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 253 (290)
|++ .+.+..+. ...+..+.|+|+|++|++++. .|.|.+||.++.+.+.... + ..++.++|+|+|++|++
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~-~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----H-SDATDVEWSPDGRYLAT 160 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----c-CcEEEEEEcCCCCEEEE
Confidence 997 55566554 567789999999999998864 4679999999888776654 3 34789999999999999
Q ss_pred EeC------CCcEEEEEcCCCcEEEEEc
Q 022910 254 GSK------DGSVHMVNITTGKVVSSLV 275 (290)
Q Consensus 254 ~~~------dg~i~~wd~~~~~~~~~~~ 275 (290)
++. |+.++||+. .|+++....
T Consensus 161 a~t~~r~~~dng~~Iw~~-~G~~l~~~~ 187 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSF-QGRLLYKKP 187 (194)
T ss_pred EEeccceeccccEEEEEe-cCeEeEecc
Confidence 875 788999998 477766543
No 210
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.6e-17 Score=134.34 Aligned_cols=224 Identities=17% Similarity=0.195 Sum_probs=170.0
Q ss_pred cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee----------------------------cccc------
Q 022910 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI----------------------------QGHK------ 107 (290)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----------------------------~~~~------ 107 (290)
.|...-+.|..+|++.+++|+|..-..|++||+.+..+...- .-|.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 467788899999988899999999999999999764321110 0110
Q ss_pred -----CCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc
Q 022910 108 -----DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA 182 (290)
Q Consensus 108 -----~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~ 182 (290)
..-..|+++.-..-|++++....|+-++++.|..+..+....+.++++..++...+|++|+.+|.|..||.+...
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 111233443222235555556779999999999999998888899999999999999999999999999999876
Q ss_pred EEEeeec------CCC-----CeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC--CC
Q 022910 183 YLNMFSG------HGS-----SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD--ST 249 (290)
Q Consensus 183 ~~~~~~~------~~~-----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~ 249 (290)
.+..+.. |.+ .|+++.|+.+|-.+++|+..|.|.|||+++.+++..-.. ....+|..+.|.+. +.
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh--~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH--GYELPIKKLDWQDTDQQN 286 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc--CCccceeeecccccCCCc
Confidence 5554432 222 499999999999999999999999999999887654432 25678999999874 34
Q ss_pred EEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910 250 LALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 250 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d 289 (290)
.|++. ....++|||-.+|+....+.. ...+..+++-|+
T Consensus 287 ~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~ 324 (703)
T KOG2321|consen 287 KVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPG 324 (703)
T ss_pred eEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecC
Confidence 45444 456899999999999998886 345888887775
No 211
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=7.4e-17 Score=141.58 Aligned_cols=223 Identities=17% Similarity=0.282 Sum_probs=160.2
Q ss_pred cCEEEEEECC-CCCcEEEEecCCCcEEEEEccC-----Ceeeeeec-------cccCCEEEEEECCCCCEEEEEeCCCcE
Q 022910 65 DEVYSVACSP-TDATLVATGGGDDKGFFWRINQ-----GDWASEIQ-------GHKDSVSSLAFSMDGQLLASGGLDGLV 131 (290)
Q Consensus 65 ~~v~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i 131 (290)
..|+.+.+-. ++..++.+|+.||.|+||+--. .+.+.... +..+.-.-+.|.....+|++++.-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 3577777654 3556888999999999997432 23333221 111222446787777777777778999
Q ss_pred EEEcCCCCceEEEEecC-CCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCccc---EEEeeecCCCC--eEEEEEcCCCC
Q 022910 132 QIWDPSSGNLKCTLEGP-GGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSS--VTCGDFTPDGK 204 (290)
Q Consensus 132 ~i~d~~~~~~~~~~~~~-~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~--i~~~~~~~~~~ 204 (290)
+|||.........+... ...++++.-+. .|+.+++|..||.|++||.|... .+...+.|+.. |..+.+.++|-
T Consensus 1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence 99999988877766533 33566665443 47899999999999999998653 46667778777 99999998765
Q ss_pred E-EEEEeCCCeEEEEcCCCCeeeEE--EeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC----
Q 022910 205 T-ICTGSDDATLRVWNPKSGENIHV--IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH---- 277 (290)
Q Consensus 205 ~-l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---- 277 (290)
. |++|+.+|.|++||++....... +..+....+..+++..++....+|+|+. +.|+||++. |+.+..++.+
T Consensus 1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFM 1347 (1387)
T ss_pred cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccc
Confidence 4 99999999999999998532222 2221112345999999999999999998 999999984 5555444422
Q ss_pred ---CCcEEEEEEecC
Q 022910 278 ---TDSIECIGFSRS 289 (290)
Q Consensus 278 ---~~~v~~i~~s~d 289 (290)
.+.+.|++|||-
T Consensus 1348 ~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPH 1362 (1387)
T ss_pred cCcCCCcceeeecch
Confidence 357899999984
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.7e-16 Score=123.22 Aligned_cols=193 Identities=19% Similarity=0.277 Sum_probs=142.5
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCC-EEEEEeCCCcEEEEcCCCC--
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSG-- 139 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-- 139 (290)
.-.+..++|++ .-..+|++..|-.|++|+-.. +....++ ..+..|+|++|-|.+. .|++|+..| |.||.....
T Consensus 98 ~~dlr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence 45678899999 667788999999999999776 4444444 3456899999999654 677777655 999976421
Q ss_pred --ce--------EE--EEecCCCCEEEEEEcCCCCEEEEeeC-CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEE
Q 022910 140 --NL--------KC--TLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206 (290)
Q Consensus 140 --~~--------~~--~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 206 (290)
.. .+ ..++| .+|++|.|.++|..+++++. +..|.|||..++..+.......+.++-+.|||++.+|
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 11 11 22333 58999999999999999886 5679999999988776665556778899999999999
Q ss_pred EEEeCCCeEEEEcCC-CCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910 207 CTGSDDATLRVWNPK-SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (290)
Q Consensus 207 ~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~ 265 (290)
++++-|+..++|... +....+-.. ..+.|...+|+|+|++|+..+.. .-++|.+
T Consensus 254 faAt~davfrlw~e~q~wt~erw~l----gsgrvqtacWspcGsfLLf~~sg-sp~lysl 308 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWIL----GSGRVQTACWSPCGSFLLFACSG-SPRLYSL 308 (445)
T ss_pred EEecccceeeeehhcccceecceec----cCCceeeeeecCCCCEEEEEEcC-CceEEEE
Confidence 999999999999544 333322222 34589999999999877655432 3344544
No 213
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=9.5e-17 Score=137.22 Aligned_cols=193 Identities=18% Similarity=0.179 Sum_probs=134.3
Q ss_pred CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCC
Q 022910 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (290)
Q Consensus 86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~ 162 (290)
+..|.+||..... ...+..+...+..++|+|+|++|+.++.+ ..|++||+.+++.... ....+....++|+|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence 4689999986554 45566678889999999999999887654 4699999988764322 22223345789999999
Q ss_pred EEEEee-CCCeE--EEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEcCCCC-eeeEEEeCCCCccc
Q 022910 163 IVLAGS-EDSTV--WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSG-ENIHVIRGHPYHTE 237 (290)
Q Consensus 163 ~l~~~~-~dg~i--~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~~~~~ 237 (290)
.|+++. .+|.+ ++||+.++. ...+..+...+....|+|+|+.|+.++ .+|..+||++... .....+ . +..
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~---~~~ 335 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G---GRG 335 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c---CCC
Confidence 888765 57764 455776665 345555666788999999999877554 5777888876432 222222 2 222
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 238 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
....|+|+|++|+.++.++ +.+||+.+++.......+ ...+++|+|||
T Consensus 336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG 383 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNG 383 (429)
T ss_pred --CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCC
Confidence 3578999999998887754 666999888764332222 34567899986
No 214
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=1.3e-15 Score=130.57 Aligned_cols=194 Identities=15% Similarity=0.086 Sum_probs=138.9
Q ss_pred cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC---CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEE
Q 022910 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164 (290)
Q Consensus 88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 164 (290)
.|.++|... .....+..+...+.+.+|+|+|+.|+..+. +..|++|++.+++.. .+....+.+...+|+|+|+.|
T Consensus 183 ~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence 688888754 444556667889999999999999888764 468999999888754 344455667889999999977
Q ss_pred EE-eeCCC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEcCCCCeeeEEEeCCCCcccC
Q 022910 165 LA-GSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTEG 238 (290)
Q Consensus 165 ~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~ 238 (290)
+. .+.++ .|++||+.++.. ..+..+........|+|+|+.|+..+. +| .|++||+..+... .+.. ....
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~---~~~~ 335 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF---GGGR 335 (435)
T ss_pred EEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec---CCCc
Confidence 64 44444 488889987765 445555566778899999998887663 33 6888898766543 3332 2344
Q ss_pred eEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 239 LTCLTISADSTLALSGSKD---GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 239 v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
+....|+|+|++|+..+.+ ..|.+|++.++. ...+.. ...+..+.|+|||
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG 388 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNG 388 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCC
Confidence 5678899999999877643 368889986554 333432 3357788999986
No 215
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=9.2e-18 Score=137.83 Aligned_cols=167 Identities=26% Similarity=0.422 Sum_probs=135.6
Q ss_pred eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEe-cCCCCEEEEEEcC--CCCEEEEeeCCCeEEE
Q 022910 99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHP--RGHIVLAGSEDSTVWM 175 (290)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~--~~~~l~~~~~dg~i~i 175 (290)
....+.+|++.|.|+.|+.+|.+|++||.|-.+.|||.-..+++..+. +|.+.|.++.|-| +.+.+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 345678999999999999999999999999999999999888887764 7999999999998 4568999999999999
Q ss_pred EECCcc----------cEEEeeecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEcCCCCeee-------EEEeCCCCccc
Q 022910 176 WNADRA----------AYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENI-------HVIRGHPYHTE 237 (290)
Q Consensus 176 ~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~~ 237 (290)
+|+... .....+..|...|..|+..|++ ..+.+++.||+|+-||++....- ..+......--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 999852 3445566788899999999977 88999999999999999863211 11111111223
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 022910 238 GLTCLTISA-DSTLALSGSKDGSVHMVNI 265 (290)
Q Consensus 238 ~v~~~~~~~-~~~~l~~~~~dg~i~~wd~ 265 (290)
...++.++| +..+|++|+.|-..++||.
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 467899999 5678999999999999994
No 216
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=5e-17 Score=128.59 Aligned_cols=167 Identities=14% Similarity=0.224 Sum_probs=138.7
Q ss_pred eeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC------CCceEEEEec-CCCCEEEEEEcCCCCEEEEeeCCCeE
Q 022910 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS------SGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTV 173 (290)
Q Consensus 101 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~------~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i 173 (290)
+.+.+|.+.|.++.|+.++++|++|+.|..+++|++. +.+++..... |...|.|++|....+.+++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 3456899999999999999999999999999999975 3466655544 44789999999999999999999999
Q ss_pred EEEECCcccEEEeeec--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcC-CCC
Q 022910 174 WMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISA-DST 249 (290)
Q Consensus 174 ~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~ 249 (290)
...|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.++.|.+||.+... ....+.. .........+-|+| ...
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~-AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP-ANSGKNFYTAEFHPETPA 208 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee-cCCCccceeeeecCCCce
Confidence 9999999998887763 23589999999999999999999999999998765 3322222 22566788899999 567
Q ss_pred EEEEEeCCCcEEEEEcCCC
Q 022910 250 LALSGSKDGSVHMVNITTG 268 (290)
Q Consensus 250 ~l~~~~~dg~i~~wd~~~~ 268 (290)
+|++.+..+-+.+||.+..
T Consensus 209 Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred eEEeccccCCCCceeeccc
Confidence 8889999999999998754
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=2.1e-16 Score=124.79 Aligned_cols=179 Identities=16% Similarity=0.236 Sum_probs=150.4
Q ss_pred cCEEEEEECCCCCcEEEEecCC--CcEEEEEccCCeeeeeeccc---------cCCEEEEEECCC--CCEEEEEeCCCcE
Q 022910 65 DEVYSVACSPTDATLVATGGGD--DKGFFWRINQGDWASEIQGH---------KDSVSSLAFSMD--GQLLASGGLDGLV 131 (290)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~---------~~~i~~~~~~~~--~~~l~~~~~dg~i 131 (290)
..+..+.-++..+.++|+|+.. ..+.|||+.+.+.+.+-+.- .-.++++.|.+. ...||+++.-+.+
T Consensus 149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv 228 (412)
T KOG3881|consen 149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV 228 (412)
T ss_pred CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence 4566666677778899999998 88999999988766654321 124578888877 7799999999999
Q ss_pred EEEcCCCC-ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEe-eecCCCCeEEEEEcCCCCEEEEE
Q 022910 132 QIWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDGKTICTG 209 (290)
Q Consensus 132 ~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~ 209 (290)
++||...+ +++..+.....+++++...|.++.+++|..-|.+..||+++++.... +.+..+.|++|..+|...+++++
T Consensus 229 R~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~ 308 (412)
T KOG3881|consen 229 RLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASC 308 (412)
T ss_pred EEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEee
Confidence 99999876 56778887888999999999999999999999999999999988776 88899999999999999999999
Q ss_pred eCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC
Q 022910 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD 247 (290)
Q Consensus 210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 247 (290)
+-|..|||+|+.+.+.+.... ..+.++++.+.++
T Consensus 309 GLDRyvRIhD~ktrkll~kvY----vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 309 GLDRYVRIHDIKTRKLLHKVY----VKSRLTFILLRDD 342 (412)
T ss_pred ccceeEEEeecccchhhhhhh----hhccccEEEecCC
Confidence 999999999999977665554 4566778877653
No 218
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=1.4e-18 Score=139.74 Aligned_cols=213 Identities=19% Similarity=0.273 Sum_probs=167.4
Q ss_pred EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEe
Q 022910 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE 146 (290)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 146 (290)
|..+.|.. ...+||++. ...++|||-. |..++.++.| ..|..+.|.|..-+|++++..|.++.-|+.+|+.+..+.
T Consensus 173 v~Dv~~LH-neq~~AVAQ-K~y~yvYD~~-GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~ 248 (545)
T KOG1272|consen 173 VRDVTFLH-NEQFFAVAQ-KKYVYVYDNN-GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR 248 (545)
T ss_pred hhhhhhhc-chHHHHhhh-hceEEEecCC-CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH
Confidence 44444444 455666665 4789999954 5666667745 468999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeee
Q 022910 147 GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI 226 (290)
Q Consensus 147 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 226 (290)
...+.+..|+-+|-+..+-+|...|+|.+|......++..+..|.++|.+|++.++|+|++|++.|..++|||+++...+
T Consensus 249 t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 249 TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred ccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred EEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc-CC--CcEEEEEccC--CCcEEEEEEecC
Q 022910 227 HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI-TT--GKVVSSLVSH--TDSIECIGFSRS 289 (290)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~-~~--~~~~~~~~~~--~~~v~~i~~s~d 289 (290)
.++.. ..+...+++|..| +||. +....|.+|.= -. +..-..+..| .++|..+.|.|-
T Consensus 329 ~t~~t----p~~a~~ls~Sqkg-lLA~-~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ 390 (545)
T KOG1272|consen 329 HTYRT----PHPASNLSLSQKG-LLAL-SYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY 390 (545)
T ss_pred ceeec----CCCcccccccccc-ceee-ecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH
Confidence 77664 3456778888654 4444 44558899952 12 1111111122 347777777763
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.74 E-value=1e-15 Score=116.13 Aligned_cols=156 Identities=17% Similarity=0.338 Sum_probs=113.4
Q ss_pred EEEEECCCCCcEEEEecC---------CCcEEEEEccC-Ceeeeeecc-ccCCEEEEEECCCCCEEEEE--eCCCcEEEE
Q 022910 68 YSVACSPTDATLVATGGG---------DDKGFFWRINQ-GDWASEIQG-HKDSVSSLAFSMDGQLLASG--GLDGLVQIW 134 (290)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~---------dg~i~iw~~~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~ 134 (290)
..+.|+|.+..+++.... -+...+|.+.. ......+.- ..++|.+++|+|+++.||+. ...+.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467899966566655541 23455666633 233444432 34579999999999987655 356799999
Q ss_pred cCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC---CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC
Q 022910 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (290)
Q Consensus 135 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 211 (290)
|++ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||+++.+.+.... | ..++.++|+|+|++|+++..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 996 56665554 456889999999999999874 4679999999888887765 3 34789999999999998764
Q ss_pred ------CCeEEEEcCCCCeeeEEE
Q 022910 212 ------DATLRVWNPKSGENIHVI 229 (290)
Q Consensus 212 ------dg~i~i~d~~~~~~~~~~ 229 (290)
|..++||+.. |+.+...
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEec-CeEeEec
Confidence 6778999984 6555443
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=2.8e-15 Score=115.58 Aligned_cols=176 Identities=14% Similarity=0.283 Sum_probs=139.8
Q ss_pred CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC-CCceEEEEecCC--CCEEEEEEcCCCCE
Q 022910 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS-SGNLKCTLEGPG--GGVEWVSWHPRGHI 163 (290)
Q Consensus 87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~--~~i~~i~~~~~~~~ 163 (290)
..|.|||=...+++..+. ...+|.++.+.++ .|++.- .+.|+||... ..+.+..+.... ..+.+++-+....+
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 469999977777777777 7789999999654 566655 5789999987 445555554322 23555544444455
Q ss_pred EEE-eeCCCeEEEEECCcccE--EEeeecCCCCeEEEEEcCCCCEEEEEeCCCe-EEEEcCCCCeeeEEEeCCCCcccCe
Q 022910 164 VLA-GSEDSTVWMWNADRAAY--LNMFSGHGSSVTCGDFTPDGKTICTGSDDAT-LRVWNPKSGENIHVIRGHPYHTEGL 239 (290)
Q Consensus 164 l~~-~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~v 239 (290)
||. |-.-|.|.|-|+...+. ...+.+|.+.|.|++++-+|..+|+++..|+ |||||..++.++..++... ....|
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~A~i 229 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-DRADI 229 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-chheE
Confidence 665 44579999999987665 4778899999999999999999999999996 8999999999999887544 45679
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910 240 TCLTISADSTLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 240 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 267 (290)
.+++|+|+..+|++++.-|+|+++.++.
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 9999999999999999999999999865
No 221
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=7.2e-16 Score=137.28 Aligned_cols=225 Identities=15% Similarity=0.167 Sum_probs=168.5
Q ss_pred CCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCC-------eeeeeeccccCCEEEEEECCCCCEE
Q 022910 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMDGQLL 122 (290)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l 122 (290)
....+..+..+..|+..|..++.++..+.+|++|+.||+|++|++... +...++.....++.++.+.+.+..+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 455677888999999999999999867799999999999999998752 2223344456789999999999999
Q ss_pred EEEeCCCcEEEEcCCCCceE-------EEEecC-CCCEE-EEEEcC--CCCEEEEeeCCCeEEEEECCcccEEEeee--c
Q 022910 123 ASGGLDGLVQIWDPSSGNLK-------CTLEGP-GGGVE-WVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFS--G 189 (290)
Q Consensus 123 ~~~~~dg~i~i~d~~~~~~~-------~~~~~~-~~~i~-~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~ 189 (290)
|+++.||.|++.++...... .....+ .+.+. .-+|.. ....++.+...+.|..||+++.....+++ .
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 99999999999998763111 111111 12233 333322 22378888889999999999876554443 3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC---CCEEEEEe--CCCcEEEEE
Q 022910 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD---STLALSGS--KDGSVHMVN 264 (290)
Q Consensus 190 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~--~dg~i~~wd 264 (290)
..+.|++++.+|.++++++|+..|.+.+||+|=+.++....-. +..++..+..+|- ....++++ ..+.|.+|+
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P--~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP--ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc--ccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 4678999999999999999999999999999987776666532 4577888888872 24555444 467899999
Q ss_pred cCCCcEEEEEcc
Q 022910 265 ITTGKVVSSLVS 276 (290)
Q Consensus 265 ~~~~~~~~~~~~ 276 (290)
+.+|.+-..+..
T Consensus 1272 ~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1272 METGLRQTVLWA 1283 (1431)
T ss_pred cccCcceEEEEc
Confidence 999877666654
No 222
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=5.3e-15 Score=126.97 Aligned_cols=226 Identities=15% Similarity=0.193 Sum_probs=151.2
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCC--CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEE-EeCCC-
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGD--DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS-GGLDG- 129 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg- 129 (290)
....+.+..+...+...+|+|++..++++...+ ..|.+|++.+++... +....+.+....|+|+|++|+. .+.+|
T Consensus 188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~ 266 (430)
T PRK00178 188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGN 266 (430)
T ss_pred CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCC
Confidence 334566667788899999999544444444333 368899998876433 3323345567899999998774 44444
Q ss_pred -cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC-C--CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCE
Q 022910 130 -LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT 205 (290)
Q Consensus 130 -~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 205 (290)
.|++||+.+++.. .+..+........|+|+++.|+..+. + ..|+++++.+++..+. ...........|+|++++
T Consensus 267 ~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 267 PEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARPRLSADGKT 344 (430)
T ss_pred ceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 6888899887654 34444455667899999998776654 3 3688888887764332 222233445789999999
Q ss_pred EEEEeCC-C--eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEEccCCC
Q 022910 206 ICTGSDD-A--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNITTGKVVSSLVSHTD 279 (290)
Q Consensus 206 l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~ 279 (290)
|+..+.. + .|.+||+.+++. ..+... .......|+|+|++|+..+.+ ..|+++++. +.....+..+.+
T Consensus 345 i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~----~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g 418 (430)
T PRK00178 345 LVMVHRQDGNFHVAAQDLQRGSV-RILTDT----SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQG 418 (430)
T ss_pred EEEEEccCCceEEEEEECCCCCE-EEccCC----CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCC
Confidence 9876643 3 588999988764 333321 112245899999988877654 357777874 555556666667
Q ss_pred cEEEEEEec
Q 022910 280 SIECIGFSR 288 (290)
Q Consensus 280 ~v~~i~~s~ 288 (290)
.+...+|+|
T Consensus 419 ~~~~p~ws~ 427 (430)
T PRK00178 419 EVREPSWSP 427 (430)
T ss_pred CcCCCccCC
Confidence 788889987
No 223
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.73 E-value=4e-15 Score=127.38 Aligned_cols=223 Identities=19% Similarity=0.262 Sum_probs=153.5
Q ss_pred CceeeeccCCcCEEEEEECCCCCcEEEEecCC---CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEE-eCCC-
Q 022910 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGD---DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDG- 129 (290)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg- 129 (290)
...+.+..+...+...+|+| +++.|+.+... ..|++|++.+++.... ..+...+.+++|+|+++.|+.. +.++
T Consensus 180 ~~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 180 ANPQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGN 257 (417)
T ss_pred CCCEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCC
Confidence 34566666777899999999 55555554432 4799999988765433 3355567789999999977654 4443
Q ss_pred -cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCC-C--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCE
Q 022910 130 -LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-S--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT 205 (290)
Q Consensus 130 -~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 205 (290)
.|++|++.+++.. .+..+........|+|+++.|+.++.. + .|+++++.+++.. .+..+...+..+.|+|++++
T Consensus 258 ~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 258 PDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred ccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCE
Confidence 5889999877644 333344445577899999988776543 3 6888898877643 34445566778899999999
Q ss_pred EEEEeCCC---eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEEccCCC
Q 022910 206 ICTGSDDA---TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSHTD 279 (290)
Q Consensus 206 l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~ 279 (290)
|+.++.++ .|.+||+.++.. ..+.. ........|+|++++|+..+.++ .+++.+. +++....+..+.+
T Consensus 336 i~~~~~~~~~~~i~~~d~~~~~~-~~l~~----~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g 409 (417)
T TIGR02800 336 IAFVHREGGGFNIAVMDLDGGGE-RVLTD----TGLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNG 409 (417)
T ss_pred EEEEEccCCceEEEEEeCCCCCe-EEccC----CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCC
Confidence 99888776 899999987543 33332 11234568999999888877654 4555554 5666677766666
Q ss_pred cEEEEEEe
Q 022910 280 SIECIGFS 287 (290)
Q Consensus 280 ~v~~i~~s 287 (290)
.+..++|+
T Consensus 410 ~~~~~~ws 417 (417)
T TIGR02800 410 DVREPAWS 417 (417)
T ss_pred CcCCCCCC
Confidence 77777774
No 224
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=1.1e-14 Score=123.94 Aligned_cols=227 Identities=15% Similarity=0.150 Sum_probs=146.4
Q ss_pred eeeeccCCcCEEEEEECCCCCc--EEEEecCCC--cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC-CC--
Q 022910 57 THIFSGHSDEVYSVACSPTDAT--LVATGGGDD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DG-- 129 (290)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~--~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg-- 129 (290)
.+.+......+..-+|+|++.. ++++...+| .|.+.++..++... +....+.....+|+|+|++|+..+. .|
T Consensus 177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~ 255 (428)
T PRK01029 177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNP 255 (428)
T ss_pred ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCc
Confidence 4455556667788899995544 333444444 57777887765433 2224445567899999998887653 22
Q ss_pred --cEEEEcCCCC---ceEEEEecCCCCEEEEEEcCCCCEEEEee-CCCe--EEEEECCc-ccEEEeeecCCCCeEEEEEc
Q 022910 130 --LVQIWDPSSG---NLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDST--VWMWNADR-AAYLNMFSGHGSSVTCGDFT 200 (290)
Q Consensus 130 --~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~--i~i~d~~~-~~~~~~~~~~~~~i~~~~~~ 200 (290)
.+.+|++..+ +.........+.....+|+|+|+.|+..+ .+|. |+++++.. +.....+......+....|+
T Consensus 256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS 335 (428)
T PRK01029 256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWS 335 (428)
T ss_pred ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeEC
Confidence 3444676653 33333333333446789999999877765 4564 55555542 23344455455567788999
Q ss_pred CCCCEEEEEeCC---CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCcEEEEE
Q 022910 201 PDGKTICTGSDD---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGSVHMVNITTGKVVSSL 274 (290)
Q Consensus 201 ~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~ 274 (290)
|+|+.|+..+.. ..|.+||+.+++... +.. ....+....|+|+|+.|+.... ...|+++++.+++.....
T Consensus 336 PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~---~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 336 PDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTT---SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccC---CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 999988866543 479999998887643 322 2234667899999998875433 357999999877754443
Q ss_pred ccCCCcEEEEEEecC
Q 022910 275 VSHTDSIECIGFSRS 289 (290)
Q Consensus 275 ~~~~~~v~~i~~s~d 289 (290)
...+.+...+|+|-
T Consensus 412 -~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 412 -IGSGEKRFPSWGAF 425 (428)
T ss_pred -cCCCcccCceecCC
Confidence 34567788899884
No 225
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=1.9e-15 Score=129.51 Aligned_cols=202 Identities=17% Similarity=0.199 Sum_probs=148.5
Q ss_pred CcEEEEEccCC-eeeeeeccccCCEEEEEECCC-CCEEEEEeCCCcEEEEcCCCCce--EE----EEecCCCCEEEEEEc
Q 022910 87 DKGFFWRINQG-DWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGNL--KC----TLEGPGGGVEWVSWH 158 (290)
Q Consensus 87 g~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~--~~----~~~~~~~~i~~i~~~ 158 (290)
+.+.+|++... .+...+. ....|+|++|+|. ..+++.|+.+|.|.+||+..+.. .. ....|..++..+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999876 3333444 6678999999994 55788888999999999988765 22 223477899999997
Q ss_pred CCCC--EEEEeeCCCeEEEEECCcccEE------Eeee------cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEcCCCC
Q 022910 159 PRGH--IVLAGSEDSTVWMWNADRAAYL------NMFS------GHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSG 223 (290)
Q Consensus 159 ~~~~--~l~~~~~dg~i~i~d~~~~~~~------~~~~------~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~ 223 (290)
.+.. -|++++.||.|..|+++..... .... .....+++++|.+ +...|++|+..|.|..=+....
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 6544 4999999999999998754321 0111 1234688999998 6678999999999877433322
Q ss_pred eee-----EEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCcEEEEEccCCCcEEEEEEecC
Q 022910 224 ENI-----HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT-TGKVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 224 ~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~v~~i~~s~d 289 (290)
+.. .....+..|.++|+++.++|=+..++..+.|.++++|... ...++..+..+...|++++|||-
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt 452 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT 452 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCc
Confidence 211 1123444588999999999955444444449999999988 77888888888888999999984
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=2.3e-15 Score=128.57 Aligned_cols=195 Identities=23% Similarity=0.272 Sum_probs=130.8
Q ss_pred CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCE
Q 022910 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163 (290)
Q Consensus 87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 163 (290)
..|.++|.. +.....+..+...+.+.+|+|+|+.|+..+.. ..|++||+.+++... +....+.+....|+|+|+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 356666663 44444455577889999999999998887643 459999999887643 3333455678999999998
Q ss_pred EEE-eeCCCeEEE--EECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC-CCeEEEE--cCCCCeeeEEEeCCCCccc
Q 022910 164 VLA-GSEDSTVWM--WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DATLRVW--NPKSGENIHVIRGHPYHTE 237 (290)
Q Consensus 164 l~~-~~~dg~i~i--~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~~~ 237 (290)
|+. .+.+|...+ +|+..+. ...+..+........|+|+|+.|+..+. .|...+| ++.++.. ..+.. ...
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~---~g~ 328 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTF---TGS 328 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEec---CCC
Confidence 874 566776555 4555444 4455545555677889999998876554 4555555 4444443 22221 122
Q ss_pred CeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 238 GLTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 238 ~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
......|+|+|++|+..+.++ .|++||+.+++... +.. ........|+|||
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg 382 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNG 382 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCC
Confidence 334578999999998776654 69999998877543 332 2345678899986
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=2.2e-15 Score=129.14 Aligned_cols=195 Identities=18% Similarity=0.167 Sum_probs=136.3
Q ss_pred CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCE
Q 022910 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163 (290)
Q Consensus 87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 163 (290)
..|.+||.... ....+..+...+.+.+|+|++++|+.++.. ..|++|++.+++... +....+...+..|+|+|+.
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 35888887543 344455577789999999999999887643 469999998887543 3333444567899999997
Q ss_pred EEE-eeCCC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEcCCCCeeeEEEeCCCCccc
Q 022910 164 VLA-GSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTE 237 (290)
Q Consensus 164 l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~ 237 (290)
|+. .+.+| .|++||+.+++. ..+..+.......+|+|+|++|+.++. +| .|+++++.+++... +.. ...
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~---~g~ 336 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF---QGN 336 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec---CCC
Confidence 764 44444 599999988764 344445555577899999998887664 44 47777877665432 221 223
Q ss_pred CeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 238 GLTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 238 ~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
....++|+|+|++|+..+.++ .|++|++.+++.. .+. +........|+|||
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG 390 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNG 390 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCC
Confidence 345689999999998765443 6999999887754 343 23345567899986
No 228
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=2.2e-18 Score=147.62 Aligned_cols=188 Identities=22% Similarity=0.417 Sum_probs=149.3
Q ss_pred eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEE
Q 022910 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (290)
Q Consensus 98 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d 177 (290)
+.+..+.+|.+.|+|+.|...|.++++|+.|..++||...+..++....+|.+.|+.++.+.+..++++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 44556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEE--------------EeC----------C-
Q 022910 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV--------------IRG----------H- 232 (290)
Q Consensus 178 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------~~~----------~- 232 (290)
+..+.++..+.+|.+.|++|+|+|-. +.+.||++++||.+-.-.+.. +.. .
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 99999999999999999999999954 778899999999871110000 000 0
Q ss_pred --CCcccCeEEEEEcCCC-----------CEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910 233 --PYHTEGLTCLTISADS-----------TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 233 --~~~~~~v~~~~~~~~~-----------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d 289 (290)
........+++|...+ .+.+++-.+-.+.+|++.+|.+++.+.+|...+..+.+||-
T Consensus 337 d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred CcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC
Confidence 0000111122222222 23334445667889999999999999999999999999873
No 229
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.4e-14 Score=124.27 Aligned_cols=224 Identities=18% Similarity=0.233 Sum_probs=147.5
Q ss_pred eeeeccCCcCEEEEEECCCCCcEEEEecCCC--cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEE-EeCCCc--E
Q 022910 57 THIFSGHSDEVYSVACSPTDATLVATGGGDD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS-GGLDGL--V 131 (290)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~--i 131 (290)
.+.+..+...+.+.+|+|++..++++...++ .|.+|++.+++... +....+......|+|+|+.|+. .+.+|. |
T Consensus 210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 288 (448)
T PRK04792 210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEI 288 (448)
T ss_pred ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEE
Confidence 3455666778899999995444444443333 58888988776432 2222333457899999998765 455564 8
Q ss_pred EEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC-C--CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEE
Q 022910 132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT 208 (290)
Q Consensus 132 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 208 (290)
+++++.+++.. .+..+........|+|+++.|+..+. + ..|+++++.+++..+. ..........+|+|+|++|+.
T Consensus 289 y~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~ 366 (448)
T PRK04792 289 YVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIM 366 (448)
T ss_pred EEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEE
Confidence 88888877654 34444455677899999998877654 3 3577788877764432 222233345789999999876
Q ss_pred EeC-CC--eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-C--cEEEEEcCCCcEEEEEccCCCcEE
Q 022910 209 GSD-DA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-G--SVHMVNITTGKVVSSLVSHTDSIE 282 (290)
Q Consensus 209 ~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~~wd~~~~~~~~~~~~~~~~v~ 282 (290)
.+. .+ .|.++|+.+++.. .+... .......|+|+|+.|+..+.+ | .+++++. +|+....+..+.+.+.
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~~-~lt~~----~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~ 440 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAMQ-VLTST----RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVK 440 (448)
T ss_pred EEecCCceEEEEEECCCCCeE-EccCC----CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcC
Confidence 654 33 5666788877643 33221 112234799999987776543 3 3777886 6777777877777888
Q ss_pred EEEEecC
Q 022910 283 CIGFSRS 289 (290)
Q Consensus 283 ~i~~s~d 289 (290)
..+|+|-
T Consensus 441 ~p~Wsp~ 447 (448)
T PRK04792 441 SPAWSPF 447 (448)
T ss_pred CCccCCC
Confidence 9999983
No 230
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2.3e-14 Score=122.36 Aligned_cols=194 Identities=15% Similarity=0.098 Sum_probs=133.2
Q ss_pred cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC---CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEE
Q 022910 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164 (290)
Q Consensus 88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 164 (290)
.|.+||...... ..+..+...+...+|+|+|+.|+..+. ...|++|++.+++..... ...+.+..+.|+|+|+.|
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEE
Confidence 688888765443 334446678999999999998887643 457999999888654332 233345578999999988
Q ss_pred EEe-eCCC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEcCCCCeeeEEEeCCCCcccC
Q 022910 165 LAG-SEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD-A--TLRVWNPKSGENIHVIRGHPYHTEG 238 (290)
Q Consensus 165 ~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~ 238 (290)
+.. +.+| .|++||+.+++..+ +..+...+....|+|+|+.|+..+.. + .|+++++.++... .+.. ....
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~---~~~~ 332 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW---EGSQ 332 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec---CCCC
Confidence 865 3344 59999998876544 33344567889999999988776654 3 4666677766543 3322 2334
Q ss_pred eEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 239 LTCLTISADSTLALSGSKD---GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 239 v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
.....|+|+|++|+..+.+ ..|++||+.+++.. .+... .......|+|||
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG 385 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNG 385 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCC
Confidence 5678899999998876543 35889999887643 34322 234567899986
No 231
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.6e-16 Score=128.69 Aligned_cols=231 Identities=19% Similarity=0.294 Sum_probs=166.2
Q ss_pred ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee--------------------------------
Q 022910 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-------------------------------- 103 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------------------------------- 103 (290)
....|.+|.+.|..+.|+. .+..|++|+.|..|.+||+..++.+..+
T Consensus 134 l~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 4566778999999999998 8889999999999999998765443333
Q ss_pred ----------------ccccCCEEEEEECCCCC-EEEEEeCCCcEEEEcCCCCceEEEEe---cCCC---CEEEEEEcCC
Q 022910 104 ----------------QGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLE---GPGG---GVEWVSWHPR 160 (290)
Q Consensus 104 ----------------~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~---~i~~i~~~~~ 160 (290)
..|.++|.-++.-|... .|.+++.|+.+.-+|++.+.+...+. .+.. ....++..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 23566666666666543 46667777777777776654433332 1222 4677888886
Q ss_pred CC-EEEEeeCCCeEEEEECCcccE------EEeee------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe---
Q 022910 161 GH-IVLAGSEDSTVWMWNADRAAY------LNMFS------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE--- 224 (290)
Q Consensus 161 ~~-~l~~~~~dg~i~i~d~~~~~~------~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--- 224 (290)
.. .+++++.+-.+++||.+.-.. +.++- .....|++++|+.++.-|+++..|-.|++|....+.
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 55 899999999999999875422 12221 234579999999888888888889999999543221
Q ss_pred ---------eeE-EEeCCCCcccCeEEEEE-cCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910 225 ---------NIH-VIRGHPYHTEGLTCLTI-SADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR 288 (290)
Q Consensus 225 ---------~~~-~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~ 288 (290)
.+. .+++|. ....|..+-| -|...|+++|+.-|.|.||+-.+++.|+-+.+-..-|+||.=+|
T Consensus 373 p~~~s~~~~~~k~vYKGHr-N~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP 446 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHR-NSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP 446 (559)
T ss_pred CCCCcchhhccchhhcccc-cccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence 112 255544 2334767765 57888999999999999999999999998888666888887665
No 232
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=8.9e-16 Score=134.92 Aligned_cols=199 Identities=21% Similarity=0.393 Sum_probs=151.2
Q ss_pred EEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-cccCCEEEEEEC-CCCCEEEEEeCCCcEEEEcCCCC---ceE
Q 022910 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFS-MDGQLLASGGLDGLVQIWDPSSG---NLK 142 (290)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~---~~~ 142 (290)
.-+.|..+.+.++++|. -..|+|||.........+. +....|+++.-+ +.|+.|++|..||.|++||.+.. ..+
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v 1247 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV 1247 (1387)
T ss_pred eeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc
Confidence 34567776777776664 6899999999887777665 344566776654 35789999999999999998754 346
Q ss_pred EEEecCCCC--EEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEEe--eecC---CCCeEEEEEcCCCCEEEEEeCCCe
Q 022910 143 CTLEGPGGG--VEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNM--FSGH---GSSVTCGDFTPDGKTICTGSDDAT 214 (290)
Q Consensus 143 ~~~~~~~~~--i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~--~~~~---~~~i~~~~~~~~~~~l~~~~~dg~ 214 (290)
..++.|... |..+.+.+.|- .|++|+.+|.|++||+|....... +..| ++.++++..++....+++|+. +.
T Consensus 1248 ~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ 1326 (1387)
T KOG1517|consen 1248 CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL 1326 (1387)
T ss_pred eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce
Confidence 677778776 99999988765 599999999999999998522221 2222 335999999999999999998 99
Q ss_pred EEEEcCCCCeeeEEEeCCC----CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 022910 215 LRVWNPKSGENIHVIRGHP----YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269 (290)
Q Consensus 215 i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 269 (290)
|+||++. |+.+..++... .....+.|++|+|-.-+||+|+.|.+|.+|......
T Consensus 1327 ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1327 IKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 9999986 44434433221 134567999999999999999999999999876543
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.70 E-value=1.1e-13 Score=115.10 Aligned_cols=235 Identities=16% Similarity=0.196 Sum_probs=153.7
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe-CCCcEE
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQ 132 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~ 132 (290)
.+.+..+......-..+.|+| +++++++++.||.|.++|+.+.+.+.+++.. ....+++++++|++++++. ..+.+.
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~ 103 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVS 103 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEE
T ss_pred CeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCcee
Confidence 455666765544434577899 6667777788999999999999999998854 4468899999999988775 589999
Q ss_pred EEcCCCCceEEEEecC-------CCCEEEEEEcCCCCEEEEeeC-CCeEEEEECCcccEEE-eeecCCCCeEEEEEcCCC
Q 022910 133 IWDPSSGNLKCTLEGP-------GGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLN-MFSGHGSSVTCGDFTPDG 203 (290)
Q Consensus 133 i~d~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~ 203 (290)
++|..+.+++..+... ...+..+..+|....+++.-. .+.|.+.|....+.+. .............|+|++
T Consensus 104 v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 104 VIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDG 183 (369)
T ss_dssp EEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTS
T ss_pred EeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCccc
Confidence 9999999998887542 346778888888886665554 5889999987654332 233345677889999999
Q ss_pred CEEEEE-eCCCeEEEEcCCCCeeeEEEeCCCC------------------------------------------------
Q 022910 204 KTICTG-SDDATLRVWNPKSGENIHVIRGHPY------------------------------------------------ 234 (290)
Q Consensus 204 ~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~------------------------------------------------ 234 (290)
++++++ .....|.++|..+++.+..+.....
T Consensus 184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~ 263 (369)
T PF02239_consen 184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK 263 (369)
T ss_dssp SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence 988664 4566888888887765443321000
Q ss_pred ---cccCeEEEEEcCCCCEEEEE----eCCCcEEEEEcCCCcEEEEEccC-CCcEEEEEEecCC
Q 022910 235 ---HTEGLTCLTISADSTLALSG----SKDGSVHMVNITTGKVVSSLVSH-TDSIECIGFSRSE 290 (290)
Q Consensus 235 ---~~~~v~~~~~~~~~~~l~~~----~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~i~~s~d~ 290 (290)
..+.-..+..+|++++|++. ...++|.++|.++.+.+.++... ...+..+.|++||
T Consensus 264 ~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG 327 (369)
T PF02239_consen 264 TIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDG 327 (369)
T ss_dssp EEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTS
T ss_pred EEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCC
Confidence 01112456779999999988 44579999999999888888642 2369999999987
No 234
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=1.2e-13 Score=106.83 Aligned_cols=155 Identities=17% Similarity=0.279 Sum_probs=118.1
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEcc-CCeeeeeeccccCCEEEEEECC--CCCEEEEE-eCCCcEEEEcCCCC
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRIN-QGDWASEIQGHKDSVSSLAFSM--DGQLLASG-GLDGLVQIWDPSSG 139 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~ 139 (290)
..+|.++.+.+ + .|++.- .+.|+||... +.+.++.+.....|=--++..| +..+||.- -.-|.|+|-|+...
T Consensus 94 ~~~I~~V~l~r-~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 94 NSEIKAVKLRR-D--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred ccceeeEEEcC-C--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence 45777887776 3 344433 5789999988 4555555543222211233344 33345543 34699999999877
Q ss_pred ce--EEEEecCCCCEEEEEEcCCCCEEEEeeCCCe-EEEEECCcccEEEeeec--CCCCeEEEEEcCCCCEEEEEeCCCe
Q 022910 140 NL--KCTLEGPGGGVEWVSWHPRGHIVLAGSEDST-VWMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSDDAT 214 (290)
Q Consensus 140 ~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~ 214 (290)
+. ...+.+|.+.|.|++.+.+|.++|+++..|+ |+|||..++..+..++. ....|++|+|+|+..+|++++.-|+
T Consensus 170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT 249 (346)
T KOG2111|consen 170 KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT 249 (346)
T ss_pred CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe
Confidence 65 4778899999999999999999999999998 89999999999988864 3467999999999999999999999
Q ss_pred EEEEcCCC
Q 022910 215 LRVWNPKS 222 (290)
Q Consensus 215 i~i~d~~~ 222 (290)
|+||.++.
T Consensus 250 lHiF~l~~ 257 (346)
T KOG2111|consen 250 LHIFSLRD 257 (346)
T ss_pred EEEEEeec
Confidence 99998865
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=3.8e-13 Score=111.94 Aligned_cols=192 Identities=18% Similarity=0.194 Sum_probs=140.1
Q ss_pred EEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEc
Q 022910 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH 158 (290)
Q Consensus 79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 158 (290)
++++-..++.|.+.|..+.+.+..+.........+.|+|+++++++++.||.|.++|+.+++.+.+++... ....++++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s 86 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVS 86 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE-
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEc
Confidence 33566678999999999999999998654444557899999999999999999999999999999988654 47889999
Q ss_pred CCCCEEEEee-CCCeEEEEECCcccEEEeeecC-------CCCeEEEEEcCCCCEEEEEeC-CCeEEEEcCCCCeeeE--
Q 022910 159 PRGHIVLAGS-EDSTVWMWNADRAAYLNMFSGH-------GSSVTCGDFTPDGKTICTGSD-DATLRVWNPKSGENIH-- 227 (290)
Q Consensus 159 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~-- 227 (290)
++|++++++. ..+.+.++|.++.++++.+... ...+.++..+|....++..-. .+.|.+.|....+.+.
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~ 166 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT 166 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence 9999988776 5899999999999988877542 346778888888886665544 5889888887654432
Q ss_pred EEeCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEEEc
Q 022910 228 VIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVVSSLV 275 (290)
Q Consensus 228 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~ 275 (290)
.+. .........|+|++++++++ .....|-++|..+++.+..+.
T Consensus 167 ~i~----~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 167 TIK----VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp EEE------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred eec----ccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 333 34556788999999987665 556799999999998887664
No 236
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.66 E-value=6.9e-15 Score=114.14 Aligned_cols=197 Identities=18% Similarity=0.223 Sum_probs=145.6
Q ss_pred EEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEE-eCCCcEEEEcCCCCceEEEEec
Q 022910 69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLKCTLEG 147 (290)
Q Consensus 69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~ 147 (290)
-..|+| +++++|+++.- .+.|-|..+.+....+. .-..|.-+.|..+..+++++ ..++.|.+|++...+....+..
T Consensus 13 ~c~fSp-~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSP-CGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECC-CCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 357999 88999988754 78888888776555444 34568889999888876655 6688999999999988888888
Q ss_pred CCCCEEEEEEcCCCCE-EEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC--------------
Q 022910 148 PGGGVEWVSWHPRGHI-VLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD-------------- 212 (290)
Q Consensus 148 ~~~~i~~i~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------------- 212 (290)
...++.++.|+|+|+. |.+...+-.|.+|.+.+.+.... +..+..+..++|+|+|++.+..+.-
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 8888999999999965 55566688999999988765443 3344566888999999987766431
Q ss_pred ----------------------CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 022910 213 ----------------------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270 (290)
Q Consensus 213 ----------------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 270 (290)
..+.+||---...+..+. ..-++..+.|+|.+++|++|+.|+.+|+.+--+.+.
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe----~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~ 244 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE----RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP 244 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee----eccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence 224444432222222222 345788999999999999999999999988666555
Q ss_pred EEE
Q 022910 271 VSS 273 (290)
Q Consensus 271 ~~~ 273 (290)
+..
T Consensus 245 f~e 247 (447)
T KOG4497|consen 245 FGE 247 (447)
T ss_pred hhh
Confidence 443
No 237
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.65 E-value=1.3e-13 Score=107.23 Aligned_cols=228 Identities=16% Similarity=0.191 Sum_probs=157.4
Q ss_pred ceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC-------
Q 022910 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD------- 128 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------- 128 (290)
-...+......+.+++|+|++..+|.+...+-.|.+|.+.+.+... ++-.+..+..++|+|+|++.+.++.-
T Consensus 83 w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~ 161 (447)
T KOG4497|consen 83 WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQ 161 (447)
T ss_pred eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHH
Confidence 3445566778999999999776888899999999999998866444 33234456889999999988876542
Q ss_pred -----------------------------CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECC
Q 022910 129 -----------------------------GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (290)
Q Consensus 129 -----------------------------g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~ 179 (290)
..+.+||.--.-.+..+. ..-.+..+.|+|.+++|++|+.|+.+++.+--
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhcee
Confidence 223333322111111222 22358899999999999999999999886532
Q ss_pred cccE------------------------------------------------------------EEeee------cCCCC
Q 022910 180 RAAY------------------------------------------------------------LNMFS------GHGSS 193 (290)
Q Consensus 180 ~~~~------------------------------------------------------------~~~~~------~~~~~ 193 (290)
+-+. +..++ .....
T Consensus 241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g 320 (447)
T KOG4497|consen 241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG 320 (447)
T ss_pred eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence 2111 00011 11334
Q ss_pred eEEEEEcCCCCEEEEEeC--CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 022910 194 VTCGDFTPDGKTICTGSD--DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271 (290)
Q Consensus 194 i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 271 (290)
+.-++|+++..++++-.. -..+-+||++..+....+. ...+|....|+|....|+.+....++++|.......+
T Consensus 321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi----Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V 396 (447)
T KOG4497|consen 321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI----QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV 396 (447)
T ss_pred cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh----hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE
Confidence 677899999988887643 3578999999877655554 5678999999998888888888888999987554433
Q ss_pred EEEccCCCcEEEEEEecCC
Q 022910 272 SSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 272 ~~~~~~~~~v~~i~~s~d~ 290 (290)
. .+...-.|..+.|..+|
T Consensus 397 ~-vP~~GF~i~~l~W~~~g 414 (447)
T KOG4497|consen 397 G-VPKKGFNIQKLQWLQPG 414 (447)
T ss_pred e-cCCCCceeeeEEecCCC
Confidence 3 33334578888887654
No 238
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.64 E-value=8.3e-14 Score=115.72 Aligned_cols=189 Identities=17% Similarity=0.250 Sum_probs=156.7
Q ss_pred CCCCcEEEEecCCCcEEEEEccCCeeeeeecc---ccCCEEEEEEC------C--------------CCCEEEEEeCCCc
Q 022910 74 PTDATLVATGGGDDKGFFWRINQGDWASEIQG---HKDSVSSLAFS------M--------------DGQLLASGGLDGL 130 (290)
Q Consensus 74 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~i~~~~~~------~--------------~~~~l~~~~~dg~ 130 (290)
|....++|....||.+++|+...++....+.. -.+..++..|. | +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 33667899999999999999999887666542 23344455552 2 2346888888999
Q ss_pred EEEEcCCCCceEEEEe--cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEE
Q 022910 131 VQIWDPSSGNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT 208 (290)
Q Consensus 131 i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 208 (290)
|.+|++..++....+. .|.+++.++.++.+-..|.+++.|+.+..|+....+.++.+...+..+.+++++|++..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999999888776 58889999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC-----CCEEEEE-eCCCcEEEEEcCC
Q 022910 209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-----STLALSG-SKDGSVHMVNITT 267 (290)
Q Consensus 209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-~~dg~i~~wd~~~ 267 (290)
++ ++|++||+.+.+.+..+.+ |.++|+++.|.-. |.+++++ ..+..|.+|-+..
T Consensus 162 as--~~ik~~~~~~kevv~~ftg---h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTG---HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecC---CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 87 7899999999999999998 8899999999765 5665554 4455677776543
No 239
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.64 E-value=4.7e-14 Score=117.17 Aligned_cols=167 Identities=19% Similarity=0.286 Sum_probs=141.4
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCceEEEEecC---CCCEEEEEE------cC--------------CCCEEEEeeCCCeE
Q 022910 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP---GGGVEWVSW------HP--------------RGHIVLAGSEDSTV 173 (290)
Q Consensus 117 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~i~~i~~------~~--------------~~~~l~~~~~dg~i 173 (290)
|...++|....||.++||+...++..+.|... .+..++..| +| +-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45668999999999999999999887776531 223344444 22 23468888999999
Q ss_pred EEEECCcccEEEeee--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEE
Q 022910 174 WMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA 251 (290)
Q Consensus 174 ~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 251 (290)
.+|++..++...++. .|.++|.++.++.+-..|.+++.|+.+..|+....+.+..... ....+.+++.+||+..|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~---~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE---QKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc---CCCccceEEEcCCCCEE
Confidence 999999999888776 4889999999999999999999999999999999988888876 56778999999999999
Q ss_pred EEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEec
Q 022910 252 LSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR 288 (290)
Q Consensus 252 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~ 288 (290)
++++ +.|++|++.+++.+.+|.+|.++|++++|--
T Consensus 160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~ 194 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTT 194 (541)
T ss_pred Eecc--ceEEEEEccCceEEEEecCCCcceEEEEEEE
Confidence 9886 5899999999999999999999999999964
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.64 E-value=2.1e-13 Score=116.77 Aligned_cols=195 Identities=18% Similarity=0.203 Sum_probs=134.8
Q ss_pred CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCE
Q 022910 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163 (290)
Q Consensus 87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 163 (290)
..|.++|..... ...+..+...+...+|+|++++|+.++.. ..|++|++.+++.... ..+.+.+.+++|+|+++.
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 357777775433 34444566678999999999999887654 4799999998865433 334455777999999997
Q ss_pred EEEe-eCCC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEcCCCCeeeEEEeCCCCccc
Q 022910 164 VLAG-SEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD-A--TLRVWNPKSGENIHVIRGHPYHTE 237 (290)
Q Consensus 164 l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~ 237 (290)
|+.. +.++ .|++|++.+++.. .+..+........|+|+++.|+..+.. + .|+++++.+++.. .+.. +..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~---~~~ 322 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF---RGG 322 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec---CCC
Confidence 7654 4343 5999999877643 333344445577899999988766543 3 6888898876543 3332 344
Q ss_pred CeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 238 GLTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 238 ~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
.+..+.|+|++++|+.++.++ .|.+|++.++.. ..+... ......+|+|||
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg 376 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNG 376 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCC
Confidence 567789999999999888776 899999987654 333322 234456788875
No 241
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=3.5e-14 Score=126.77 Aligned_cols=191 Identities=18% Similarity=0.251 Sum_probs=145.6
Q ss_pred CeeeeeeccccCCEEEEEECCCC-CEEEEEeCCCcEEEEcCCCC-------ceEEEEecCCCCEEEEEEcCCCCEEEEee
Q 022910 97 GDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSG-------NLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168 (290)
Q Consensus 97 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 168 (290)
|..+..+..|...+..++.++.. .+|++||.||+|++|++..- +...++......+.++.+.+.+..+|+++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 56777788899999898887654 89999999999999998642 22334444567899999999999999999
Q ss_pred CCCeEEEEECCccc-------EEEeeec--CCCCeEEEEEcC-CCC-EEEEEeCCCeEEEEcCCCCeeeEEEeCCCCccc
Q 022910 169 EDSTVWMWNADRAA-------YLNMFSG--HGSSVTCGDFTP-DGK-TICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237 (290)
Q Consensus 169 ~dg~i~i~d~~~~~-------~~~~~~~--~~~~i~~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 237 (290)
.||.|.+.++.... ..+.... .+..+..-+|.. .+. .++.+..-+.|..||+++......++... ..+
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~-~hG 1196 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL-RHG 1196 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc-ccc
Confidence 99999999987621 1122221 222233333333 233 67788889999999999888777776544 457
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc-cCCCcEEEEEEec
Q 022910 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-SHTDSIECIGFSR 288 (290)
Q Consensus 238 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~s~ 288 (290)
.|++++.+|.+++++.|+..|.+.+||++-+.++.+.. ++..+|+.+..+|
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeec
Confidence 79999999999999999999999999999888887765 3457888877765
No 242
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.62 E-value=4e-13 Score=102.88 Aligned_cols=203 Identities=14% Similarity=0.216 Sum_probs=150.5
Q ss_pred CCCcEEEEEccCCeeee--ee-ccccCCEEEEEECC---CCC-EEEEEeCCCcEEEEcCCCCceEEEEecCC------CC
Q 022910 85 GDDKGFFWRINQGDWAS--EI-QGHKDSVSSLAFSM---DGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPG------GG 151 (290)
Q Consensus 85 ~dg~i~iw~~~~~~~~~--~~-~~~~~~i~~~~~~~---~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~ 151 (290)
..|.+.+|++...+... .+ ......+..|.|+. ++. .++-+...|.|.++..........+++-. ..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 45789999988765443 11 22345677788863 444 56667778999999876544444443321 12
Q ss_pred EEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE--EeeecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEcCCCCeeeEE
Q 022910 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL--NMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHV 228 (290)
Q Consensus 152 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~ 228 (290)
..++.|++.+..++++..+|.+.+-+....... +.++.|...++...|+. +.+++++|+.|+.+..||+|..+ ...
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i 202 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFI 202 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-cee
Confidence 457889999999999999999997766555443 47889999999999987 56788999999999999999443 234
Q ss_pred EeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC-CcEEEEEccCCCcEEEEEEecC
Q 022910 229 IRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITT-GKVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 229 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~i~~s~d 289 (290)
+...+.|..+|.++.-+| .+.+|++|+.|-.|++||.++ ++++..-.. .+.|+.+.++|-
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPE 264 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecch
Confidence 444445889999999887 788999999999999999995 666665543 488999999884
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=3.2e-14 Score=117.83 Aligned_cols=194 Identities=18% Similarity=0.341 Sum_probs=155.0
Q ss_pred EEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec
Q 022910 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG 147 (290)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 147 (290)
..++++...-.+++.| ....|+-+++..|+.+..+....+.++++..++-..+|++|+.+|.|..||.+....+.++..
T Consensus 137 RDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred ccccccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeec
Confidence 3455554344455444 456788999999999999988889999999999999999999999999999988776655532
Q ss_pred ------CCC-----CEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee-cCCCCeEEEEEcCC--CCEEEEEeCCC
Q 022910 148 ------PGG-----GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTPD--GKTICTGSDDA 213 (290)
Q Consensus 148 ------~~~-----~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~--~~~l~~~~~dg 213 (290)
+.+ .|+++.|+.+|-.+++|+..|.+.|||+++.+++..-. +...+|..+.|.+. ++.+++ ....
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~ 294 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKR 294 (703)
T ss_pred ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchH
Confidence 222 49999999999999999999999999999988765543 34568999999875 344444 4567
Q ss_pred eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 267 (290)
.++|||-.+|+....+. ....++.+|+-|++.+++++-.++.+..|=+..
T Consensus 295 ~~kiWd~~~Gk~~asiE----pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 295 ILKIWDECTGKPMASIE----PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred HhhhcccccCCceeecc----ccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 89999999999887776 456699999999999999999988887776654
No 244
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=8.5e-13 Score=113.39 Aligned_cols=194 Identities=17% Similarity=0.151 Sum_probs=130.8
Q ss_pred cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEE
Q 022910 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164 (290)
Q Consensus 88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 164 (290)
.|.++|..... ...+..+...+....|+|+|++|+..+.. ..|.+|++.+++... +....+.+....|+|+|+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 46677776544 34444567788999999999998877643 469999998887543 33333445678999999988
Q ss_pred EE-eeCCC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEcCCCCeeeEEEeCCCCcccC
Q 022910 165 LA-GSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-D--ATLRVWNPKSGENIHVIRGHPYHTEG 238 (290)
Q Consensus 165 ~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~~~ 238 (290)
+. ...+| .|++||+.+++.. .+..+........|+|+|+.|+..+. + ..|+++++.+++...... ....
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~----~~~~ 332 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF----VGNY 332 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec----CCCC
Confidence 74 44444 6899999887644 34445555667889999998876553 3 368888887776433222 1223
Q ss_pred eEEEEEcCCCCEEEEEeCC-C--cEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 239 LTCLTISADSTLALSGSKD-G--SVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 239 v~~~~~~~~~~~l~~~~~d-g--~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
.....|+|+|++|+..+.. + .|.+||+.+++. ..+.. ........|+|||
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~-~~~~~~p~~spdg 385 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD-TSLDESPSVAPNG 385 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccC-CCCCCCceECCCC
Confidence 3457899999998877653 3 588999988764 33332 2223356888886
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.61 E-value=5e-14 Score=123.87 Aligned_cols=187 Identities=21% Similarity=0.353 Sum_probs=152.8
Q ss_pred CCcEEEEecCCCcEEEEEccCCeeeeeeccccCC----EEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCC
Q 022910 76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDS----VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151 (290)
Q Consensus 76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 151 (290)
....++.++.+..+.+|+...+.....+...... ..-+.++++.-++++|+.-+.|.+|.....+....+.+|.+.
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~ 177 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS 177 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence 3456777778899999999887776666532221 122234566669999999999999999855544578899999
Q ss_pred EEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEE-eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEe
Q 022910 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN-MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230 (290)
Q Consensus 152 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 230 (290)
|..+.|+-+|+++++.+.|..+++|++.+.+... ..-+|...|..++|.|+ .+++++.|.+.++|+.. +..+..+.
T Consensus 178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~ 254 (967)
T KOG0974|consen 178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYD 254 (967)
T ss_pred eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhh
Confidence 9999999999999999999999999999988766 66789999999999988 89999999999999664 44445666
Q ss_pred CCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 267 (290)
.+ ....+..++..++...++|++.||.+++|++..
T Consensus 255 ~h--~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 255 EH--SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hh--hhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 54 456799999999999999999999999999864
No 246
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.60 E-value=1.7e-11 Score=101.96 Aligned_cols=222 Identities=18% Similarity=0.293 Sum_probs=143.9
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-Ceeeee---ec----------cccCCEEEEEECCCCCEEEEEeC-C
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASE---IQ----------GHKDSVSSLAFSMDGQLLASGGL-D 128 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~---~~----------~~~~~i~~~~~~~~~~~l~~~~~-d 128 (290)
......++++|++..++++...+|.|.++++.. +..... +. ......+++.|+|+++++++... .
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA 165 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence 345567899995555555555689999999987 333222 11 12346789999999998877643 4
Q ss_pred CcEEEEcCCCCc--eE--EEEe-cCCCCEEEEEEcCCCCEEEEee-CCCeEEEEECC--ccc--EEEeeec------CCC
Q 022910 129 GLVQIWDPSSGN--LK--CTLE-GPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNAD--RAA--YLNMFSG------HGS 192 (290)
Q Consensus 129 g~i~i~d~~~~~--~~--~~~~-~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~--~~~--~~~~~~~------~~~ 192 (290)
..|++|++.... +. ..+. ......+.++|+|+++++++.. .++.|.++++. ++. .+..+.. ...
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 245 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN 245 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence 579999987665 32 2222 2445689999999999877665 47789999987 332 2222221 112
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCeEEEEcCC--CCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEc--C
Q 022910 193 SVTCGDFTPDGKTICTGS-DDATLRVWNPK--SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNI--T 266 (290)
Q Consensus 193 ~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~--~ 266 (290)
....|+++|+|++|+++. ....|.+|++. ++.. ..+............+.++|+|++|+++.. ++.|.+|++ .
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL-TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE-EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce-EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 578999999999988765 46789999983 2332 222222213455899999999999998875 568998876 5
Q ss_pred CCcEEEEEc-cCCCcEEEEEE
Q 022910 267 TGKVVSSLV-SHTDSIECIGF 286 (290)
Q Consensus 267 ~~~~~~~~~-~~~~~v~~i~~ 286 (290)
+|++...-. ..-....||.|
T Consensus 325 tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 325 TGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTEEEEEEEEEESSSEEEEEE
T ss_pred CCcEEEecccccCCCCEEEeC
Confidence 666544432 22356677776
No 247
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.59 E-value=9.6e-15 Score=134.48 Aligned_cols=197 Identities=12% Similarity=0.272 Sum_probs=161.1
Q ss_pred eccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCC
Q 022910 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS 138 (290)
Q Consensus 60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 138 (290)
++.|-..|.++.-+|.. .+.+||+.||.+++|....++.+..+. .....|+.+.|+.+|+.+..+..||.|.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred eecccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 34456678888888944 455699999999999999888776654 233889999999999999999999999999987
Q ss_pred CceEEEEecCCCCEEEEEEcCCCCEEEEee---CCCeEEEEECCcc---cEEEeeecCCCCeEEEEEcCCCCEEEEEeCC
Q 022910 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGS---EDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (290)
Q Consensus 139 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 212 (290)
.++....+.|......+.|-. ..+++++ .++.+.+||.-.. .++. +.|...++++++.|..++|++|+.+
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCc
Confidence 677778888988888888864 5677654 4678999996432 2233 7799999999999999999999999
Q ss_pred CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (290)
Q Consensus 213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 275 (290)
|.|++||++..+.++.++. +. ...++++|+..|.|+||++.....+++++
T Consensus 2358 G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999998777665552 44 56799999999999999999887777765
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.58 E-value=3.6e-11 Score=100.09 Aligned_cols=225 Identities=20% Similarity=0.285 Sum_probs=147.7
Q ss_pred cCEEEEEECCCCCcEEEEecC----CCcEEEEEccCC--e--eeeeeccccCCEEEEEECCCCCEEEEEeC-CCcEEEEc
Q 022910 65 DEVYSVACSPTDATLVATGGG----DDKGFFWRINQG--D--WASEIQGHKDSVSSLAFSMDGQLLASGGL-DGLVQIWD 135 (290)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d 135 (290)
.....++++| ++.+|++... .+.|..|.+... + .+............++++|++++|+++.. +|.|.+++
T Consensus 37 ~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 37 ENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 3456788899 4555555443 679999998764 3 23333323345567999999999888864 89999999
Q ss_pred CCC-CceEEE---Ee----------cCCCCEEEEEEcCCCCEEEEeeC-CCeEEEEECCccc--EE--Eee-ecCCCCeE
Q 022910 136 PSS-GNLKCT---LE----------GPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAA--YL--NMF-SGHGSSVT 195 (290)
Q Consensus 136 ~~~-~~~~~~---~~----------~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~--~~--~~~-~~~~~~i~ 195 (290)
+.. +.+... +. .......++.|+|+++++++... ...|++|++.... .. ..+ .......+
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 987 333222 21 12345789999999998887654 4579999987654 21 222 23556789
Q ss_pred EEEEcCCCCEEEEEe-CCCeEEEEcCC--CCe--eeEEEeCCC---CcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 022910 196 CGDFTPDGKTICTGS-DDATLRVWNPK--SGE--NIHVIRGHP---YHTEGLTCLTISADSTLALSGSK-DGSVHMVNIT 266 (290)
Q Consensus 196 ~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~--~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~ 266 (290)
.+.|+|+++++++.. .++.|.+|++. ++. .+..+.... ........++++|+|++|+++.. .+.|.+|++.
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 999999999887655 47889999887 442 233333221 11236789999999999888764 6689999993
Q ss_pred --CCc--EEEEEccCCCcEEEEEEecCC
Q 022910 267 --TGK--VVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 267 --~~~--~~~~~~~~~~~v~~i~~s~d~ 290 (290)
+++ .+..+.......+.++++|+|
T Consensus 276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~g 303 (345)
T PF10282_consen 276 PATGTLTLVQTVPTGGKFPRHFAFSPDG 303 (345)
T ss_dssp TTTTTEEEEEEEEESSSSEEEEEE-TTS
T ss_pred cCCCceEEEEEEeCCCCCccEEEEeCCC
Confidence 333 444555444568999999986
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=3.3e-12 Score=109.71 Aligned_cols=194 Identities=17% Similarity=0.137 Sum_probs=126.5
Q ss_pred cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEE
Q 022910 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164 (290)
Q Consensus 88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 164 (290)
.|.++|...... ..+..+...+....|+|+|++|+..+.. ..|++||+.+++.... ....+......|+|+|+.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 566667654433 3444466788899999999988876543 3688999988775433 2223334578999999977
Q ss_pred EE-eeCCC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEcCCCCeeeEEEeCCCCcccC
Q 022910 165 LA-GSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTEG 238 (290)
Q Consensus 165 ~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~ 238 (290)
+. .+.+| .|+++|+.+++.. .+..+.......+|+|+++.|+..+. ++ .|+++|+.+++...... ....
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~----~g~~ 351 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF----EGEQ 351 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec----CCCC
Confidence 75 45555 4888899877643 44445555677899999998876553 33 57777887776433221 1222
Q ss_pred eEEEEEcCCCCEEEEEeCC-C--cEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 239 LTCLTISADSTLALSGSKD-G--SVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 239 v~~~~~~~~~~~l~~~~~d-g--~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
....+|+|+|++|+..+.. + .|.++|+.+++.. .+... .......|+|||
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG 404 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNG 404 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCC
Confidence 3456899999988776553 3 5667788777643 33322 122345788876
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.54 E-value=9e-11 Score=95.92 Aligned_cols=199 Identities=14% Similarity=0.122 Sum_probs=142.6
Q ss_pred ECCCCCcEEEEec---------CCCcEEEEEccCCeeeeeeccccC-------CEEEEEECCCCCEEEEEe-C-CCcEEE
Q 022910 72 CSPTDATLVATGG---------GDDKGFFWRINQGDWASEIQGHKD-------SVSSLAFSMDGQLLASGG-L-DGLVQI 133 (290)
Q Consensus 72 ~~~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~~-~-dg~i~i 133 (290)
++|+++.++++.+ .+..|.+||+.+.+.+..+..... ....++++|+|++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8995555555556 688999999999999988763222 234788999999988776 3 689999
Q ss_pred EcCCCCceEEEEecCC------------------CC-------------EEEE--------------EEcC-CCCEEEEe
Q 022910 134 WDPSSGNLKCTLEGPG------------------GG-------------VEWV--------------SWHP-RGHIVLAG 167 (290)
Q Consensus 134 ~d~~~~~~~~~~~~~~------------------~~-------------i~~i--------------~~~~-~~~~l~~~ 167 (290)
.|+.+++.+..+.... +. .... .|.+ +++++++.
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 9999887665432111 00 0011 1123 67777776
Q ss_pred eCCCeEEEEECCcc-----cEEEeeec-------CCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEcCCCCee
Q 022910 168 SEDSTVWMWNADRA-----AYLNMFSG-------HGSSVTCGDFTPDGKTICTGS----------DDATLRVWNPKSGEN 225 (290)
Q Consensus 168 ~~dg~i~i~d~~~~-----~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~ 225 (290)
.. |.|++.|+... .....+.. ....+.-++++|+++.+++.. ..+.|.++|..+++.
T Consensus 213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv 291 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR 291 (352)
T ss_pred cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence 66 99999996443 22222211 233445599999999888743 124799999999999
Q ss_pred eEEEeCCCCcccCeEEEEEcCCCC-EEEEEe-CCCcEEEEEcCCCcEEEEEc
Q 022910 226 IHVIRGHPYHTEGLTCLTISADST-LALSGS-KDGSVHMVNITTGKVVSSLV 275 (290)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~~wd~~~~~~~~~~~ 275 (290)
+..+.. ...+..++++||++ +|++.. .++.|.++|+.+++.++++.
T Consensus 292 i~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 292 LRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 988873 56789999999999 887776 57889999999999999983
No 251
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=6.3e-14 Score=113.97 Aligned_cols=210 Identities=20% Similarity=0.341 Sum_probs=162.6
Q ss_pred eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee---ccccC---CEEEEEECCCCC-EEEEEeCCC
Q 022910 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI---QGHKD---SVSSLAFSMDGQ-LLASGGLDG 129 (290)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~---~i~~~~~~~~~~-~l~~~~~dg 129 (290)
...+..|.++|..++.-|...+-|.+++.|+.+.-+|+........+ ..+.. ....++..|... .+++++.|-
T Consensus 225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq 304 (559)
T KOG1334|consen 225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ 304 (559)
T ss_pred ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhh
Confidence 55677899999999999988999999999999999999876543332 22333 567888888665 899999999
Q ss_pred cEEEEcCCCCce------EEEEe------cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc------------cEEE
Q 022910 130 LVQIWDPSSGNL------KCTLE------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA------------AYLN 185 (290)
Q Consensus 130 ~i~i~d~~~~~~------~~~~~------~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~------------~~~~ 185 (290)
.+++||.+.-.. +..+. ...-.|++++|+.++.-|+++..|-.|+++.-..+ ..++
T Consensus 305 f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k 384 (559)
T KOG1334|consen 305 FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK 384 (559)
T ss_pred hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccc
Confidence 999999864321 12221 12346999999988888888888999999953321 1222
Q ss_pred -eeecCCC--CeEEEEE-cCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 022910 186 -MFSGHGS--SVTCGDF-TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (290)
Q Consensus 186 -~~~~~~~--~i~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 261 (290)
.+++|.. .|..+-| -|...|+++|+..|.|.||+-.+++.+..+.+. ...|+||.-+|--.+||+++-|..|+
T Consensus 385 ~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD---r~VVNCLEpHP~~PvLAsSGid~DVK 461 (559)
T KOG1334|consen 385 RVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD---RHVVNCLEPHPHLPVLASSGIDHDVK 461 (559)
T ss_pred hhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc---cceEeccCCCCCCchhhccCCcccee
Confidence 3667654 4556654 578899999999999999999999999888874 44899999999999999999999999
Q ss_pred EEEcCCCc
Q 022910 262 MVNITTGK 269 (290)
Q Consensus 262 ~wd~~~~~ 269 (290)
||-..+.+
T Consensus 462 IWTP~~~e 469 (559)
T KOG1334|consen 462 IWTPLTAE 469 (559)
T ss_pred eecCCccc
Confidence 99875443
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=6.9e-12 Score=103.93 Aligned_cols=215 Identities=16% Similarity=0.233 Sum_probs=145.4
Q ss_pred CCcCEEEEEECCC-CCcEEEE-----ecCCCcEEEEEccCCeeeeee---ccccCCEEEEEECCCCC-EEEEEeC--C--
Q 022910 63 HSDEVYSVACSPT-DATLVAT-----GGGDDKGFFWRINQGDWASEI---QGHKDSVSSLAFSMDGQ-LLASGGL--D-- 128 (290)
Q Consensus 63 h~~~v~~~~~~~~-~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~---~~~~~~i~~~~~~~~~~-~l~~~~~--d-- 128 (290)
|...|..+.++|. ....+|+ .+.-+.|+||.+........+ .-....-..+.|++-|. +|+.++. |
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 5778999999994 2344443 356678999998732221111 11223335688988777 3333322 2
Q ss_pred -------CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEe--eCCCeEEEEECCcccEEEeeecCCCCeEEEEE
Q 022910 129 -------GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG--SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF 199 (290)
Q Consensus 129 -------g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 199 (290)
.+++++++........+. ..++|.++.|+|+++-|+++ ..-..+.|||++ +.++..+ ..++-.++-|
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~f 319 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFF 319 (566)
T ss_pred CccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEE
Confidence 468888877434433333 47899999999999877664 456789999996 4445444 3566678889
Q ss_pred cCCCCEEEEEeC---CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCcE
Q 022910 200 TPDGKTICTGSD---DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK------DGSVHMVNITTGKV 270 (290)
Q Consensus 200 ~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~ 270 (290)
+|.|++|+.++- -|.|-|||+.+.+++..+.. ...+-+.|+|+|.+++|++. |+.++||+. +|+.
T Consensus 320 np~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-----~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~ 393 (566)
T KOG2315|consen 320 NPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSL 393 (566)
T ss_pred CCCCCEEEEeecCCCCCceEEEeccchhhcccccc-----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCce
Confidence 999999987654 58899999999777766653 33566799999999999876 688999997 5666
Q ss_pred EEEEccCCCcEEEEEEec
Q 022910 271 VSSLVSHTDSIECIGFSR 288 (290)
Q Consensus 271 ~~~~~~~~~~v~~i~~s~ 288 (290)
+....-. ...+.+.|-|
T Consensus 394 l~~~~f~-sEL~qv~W~P 410 (566)
T KOG2315|consen 394 LHEKMFK-SELLQVEWRP 410 (566)
T ss_pred eehhhhh-HhHhheeeee
Confidence 5543321 1455666653
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.2e-11 Score=105.46 Aligned_cols=197 Identities=11% Similarity=0.089 Sum_probs=123.0
Q ss_pred cEEEEEccCCeeeeeeccccCCEEEEEECCCCCE--E-EEEeCC--CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCC
Q 022910 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL--L-ASGGLD--GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (290)
Q Consensus 88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l-~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~ 162 (290)
.|.+.|...+.. ..+......+..-.|+|+|+. + ++...+ ..|.+.++.+++...... ..+......|+|+|+
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCCC
Confidence 566666654433 334445556778899999975 3 233333 468888988776543333 344456789999999
Q ss_pred EEEEeeC-CC----eEEEEECCcc---cEEEeeecCCCCeEEEEEcCCCCEEEEEe-CCCe--EEEEcCCC-CeeeEEEe
Q 022910 163 IVLAGSE-DS----TVWMWNADRA---AYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDAT--LRVWNPKS-GENIHVIR 230 (290)
Q Consensus 163 ~l~~~~~-dg----~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~-~~~~~~~~ 230 (290)
.|+..+. .| .+..|++..+ ...+............+|+|+|+.|+..+ .+|. |+++++.. +.....+.
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt 323 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT 323 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence 8887653 22 3444777652 32333322223446789999999887655 4564 44445432 22233333
Q ss_pred CCCCcccCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 231 GHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
. ....+....|+|+|+.|+..+.. ..|++||+.+++... +......+....|+|||
T Consensus 324 ~---~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG 382 (428)
T PRK01029 324 K---KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDS 382 (428)
T ss_pred c---CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCC
Confidence 2 33456788999999988876543 379999998887643 43334467788999986
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.52 E-value=1.9e-10 Score=94.10 Aligned_cols=200 Identities=15% Similarity=0.169 Sum_probs=143.2
Q ss_pred CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC----------CCcEEEEcCCCCceEEEEecCCC------
Q 022910 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL----------DGLVQIWDPSSGNLKCTLEGPGG------ 150 (290)
Q Consensus 87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~------ 150 (290)
++|.+.|..+++.+..+.....+- .+ ++|+++.|+++.. +..|.+||+.+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999999988887544443 35 9999998777755 78999999999999988875322
Q ss_pred -CEEEEEEcCCCCEEEEee-C-CCeEEEEECCcccEEEeeecCC-------------------------------CCeEE
Q 022910 151 -GVEWVSWHPRGHIVLAGS-E-DSTVWMWNADRAAYLNMFSGHG-------------------------------SSVTC 196 (290)
Q Consensus 151 -~i~~i~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~-------------------------------~~i~~ 196 (290)
....++++|+|++|++.. . +..|.++|+.+++.+..+.... ..+..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence 234789999999999876 3 6889999999877654332100 00111
Q ss_pred E--------------EEcC-CCCEEEEEeCCCeEEEEcCCCC-----eeeEEEeCC----CCcccCeEEEEEcCCCCEEE
Q 022910 197 G--------------DFTP-DGKTICTGSDDATLRVWNPKSG-----ENIHVIRGH----PYHTEGLTCLTISADSTLAL 252 (290)
Q Consensus 197 ~--------------~~~~-~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~ 252 (290)
. .|.+ +++++++... |.|++.|+... .....+... ......+.-++++|+++.++
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 1 1233 7777777766 99999996432 222222211 11344555699999999888
Q ss_pred EEe----------CCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 253 SGS----------KDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 253 ~~~----------~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
+.. ..+.|.++|+.+++.+..+.. ...+.+|+++|||
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dg 310 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDA 310 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCC
Confidence 853 125799999999999999986 4689999999986
No 255
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=4.5e-14 Score=116.89 Aligned_cols=211 Identities=20% Similarity=0.318 Sum_probs=152.2
Q ss_pred CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-------CeeeeeeccccCCEEEEEECCCCCEEEE
Q 022910 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-------GDWASEIQGHKDSVSSLAFSMDGQLLAS 124 (290)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 124 (290)
...-.++.+.||+..|..++--. +.+-+++++.|.+|++|.++. ..+..+++.|+.+|.++.|..+.+++++
T Consensus 723 ~~~irL~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S 801 (1034)
T KOG4190|consen 723 FDHIRLCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS 801 (1034)
T ss_pred cceeeeecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee
Confidence 34456788999999999988665 667788999999999999864 2366778899999999999998888876
Q ss_pred EeCCCcEEEEcCCCCceEEEEec--CCCCEEEEEEcC--CCCEEEEe-eCCCeEEEEECCcccEEEeee-----cCCCCe
Q 022910 125 GGLDGLVQIWDPSSGNLKCTLEG--PGGGVEWVSWHP--RGHIVLAG-SEDSTVWMWNADRAAYLNMFS-----GHGSSV 194 (290)
Q Consensus 125 ~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-----~~~~~i 194 (290)
+ ||-|.+||.--++++..+.. ..+.+..+..-+ +...++.| +...+|+++|.+.......++ +.+..+
T Consensus 802 c--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~ 879 (1034)
T KOG4190|consen 802 C--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALT 879 (1034)
T ss_pred c--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhe
Confidence 6 78899999887776653321 122233333323 33344444 678999999999887655443 345678
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE-EEcCCCc
Q 022910 195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM-VNITTGK 269 (290)
Q Consensus 195 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~-wd~~~~~ 269 (290)
++++..|.|++++++-..|.|.+.|.++|+.+..++.. ....-.++ .|..+.|+....|.++.+ |..-.+.
T Consensus 880 R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm---ecdllqla-apsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 880 RAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM---ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred eEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc---cchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence 99999999999999999999999999999987766542 22222222 344556666666666666 6554443
No 256
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.2e-10 Score=98.89 Aligned_cols=210 Identities=10% Similarity=0.038 Sum_probs=135.4
Q ss_pred CEEEEEECCCCCcEEEE-ecC--CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe-C--CCcEEEEcCCCC
Q 022910 66 EVYSVACSPTDATLVAT-GGG--DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-L--DGLVQIWDPSSG 139 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~-~~~--dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~--dg~i~i~d~~~~ 139 (290)
.+....|+|++..+++. ... ...|.++++.+++...... ..+......|+|+|+.|+... . +..|.++++.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 77889999955543443 322 3569999998876554433 455567788999998776543 2 356888898877
Q ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEeeCC-C--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCC----
Q 022910 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-S--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD---- 212 (290)
Q Consensus 140 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---- 212 (290)
+... +..+........|+|+|+.|+..+.. + .|+++++.+++..+.... ... ...|+|+|++|+..+..
T Consensus 268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcc
Confidence 6443 43333334456899999987776642 2 688899988775443322 111 24899999998766543
Q ss_pred -----CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEEccCCCcEEEE
Q 022910 213 -----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSHTDSIECI 284 (290)
Q Consensus 213 -----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~i 284 (290)
..|.+.|+.++.. ..+... .......|+|||+.|+..+..+ .+.+.++. |.....+....+.|+..
T Consensus 344 ~~~~~~~I~v~d~~~g~~-~~LT~~----~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~~p 417 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYI-RRLTAN----GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKIQSI 417 (419)
T ss_pred cCCCCcEEEEEECCCCCe-EECCCC----CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCccCCC
Confidence 3788889987764 333321 1223578999999877665432 47777774 44444455445556554
Q ss_pred EE
Q 022910 285 GF 286 (290)
Q Consensus 285 ~~ 286 (290)
+|
T Consensus 418 ~W 419 (419)
T PRK04043 418 DW 419 (419)
T ss_pred CC
Confidence 44
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.49 E-value=1.2e-11 Score=94.81 Aligned_cols=218 Identities=15% Similarity=0.172 Sum_probs=149.9
Q ss_pred CcCEEEEEECC--CCCc-EEEEecCCCcEEEEEccCCeeeeeecccc------CCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910 64 SDEVYSVACSP--TDAT-LVATGGGDDKGFFWRINQGDWASEIQGHK------DSVSSLAFSMDGQLLASGGLDGLVQIW 134 (290)
Q Consensus 64 ~~~v~~~~~~~--~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (290)
+..+..+.|.. .++. .++-+-..|.|.+|..........+.+-. ....++.|++.+..++++-.+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34566666653 3343 56667778999999876544444333211 124578889999999999999999966
Q ss_pred cCCCCceE--EEEecCCCCEEEEEEcCC-CCEEEEeeCCCeEEEEECCc-ccEEEe-eecCCCCeEEEEEcC-CCCEEEE
Q 022910 135 DPSSGNLK--CTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADR-AAYLNM-FSGHGSSVTCGDFTP-DGKTICT 208 (290)
Q Consensus 135 d~~~~~~~--~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~-~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~ 208 (290)
+.....+. +.++.|...++-..|+.. .+++++|+.|+.+..||+|. ++.+.. .+.|...|.+|.-+| .+.++++
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence 65555443 478889988988888764 46899999999999999993 333333 556889999998887 6789999
Q ss_pred EeCCCeEEEEcCCC-CeeeEEEeCCCCcccCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCC--c---EEEEEccCCCc
Q 022910 209 GSDDATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISAD--STLALSGSKDGSVHMVNITTG--K---VVSSLVSHTDS 280 (290)
Q Consensus 209 ~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~--~---~~~~~~~~~~~ 280 (290)
|+.|-.|++||.|+ ++++..-. ..++|+.+.++|. +.+|+++-..| .+|.+...+ + .+...+.|.+-
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~~----v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl 303 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKAK----VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSL 303 (339)
T ss_pred eccccceeeeehhcccCccccCc----cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccce
Confidence 99999999999994 44443333 4688999999993 34455444444 566665543 2 33444555554
Q ss_pred EEEEEE
Q 022910 281 IECIGF 286 (290)
Q Consensus 281 v~~i~~ 286 (290)
+.+-.|
T Consensus 304 ~YG~DW 309 (339)
T KOG0280|consen 304 CYGGDW 309 (339)
T ss_pred eecccc
Confidence 444433
No 258
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.48 E-value=5.8e-10 Score=88.54 Aligned_cols=211 Identities=17% Similarity=0.194 Sum_probs=146.1
Q ss_pred EEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEEC-CCCCEEEEEeCCCcEEEEcCCCCceEEEEec
Q 022910 69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLEG 147 (290)
Q Consensus 69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 147 (290)
++.|.+..+.++++.-..+.|..|+..+++... +.... ...+++. +++ .|+.+... .+.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeec
Confidence 567888678888888889999999998876543 22111 6677777 564 45555544 466669988866544443
Q ss_pred -----CCCCEEEEEEcCCCCEEEEeeCC--------CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEE-EEeCCC
Q 022910 148 -----PGGGVEWVSWHPRGHIVLAGSED--------STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDDA 213 (290)
Q Consensus 148 -----~~~~i~~i~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg 213 (290)
.....+.+++.|+|++.++.... |.|+.++.. ++...... .-.....|+|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 33468899999999977776543 568888877 44333333 345678999999998776 566788
Q ss_pred eEEEEcCCCCee----eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEEe
Q 022910 214 TLRVWNPKSGEN----IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287 (290)
Q Consensus 214 ~i~i~d~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s 287 (290)
.|..|++..... ...+............+++..+|+++++....+.|.+++.. |+++..+......+++++|.
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 899999853221 12222211122347889999999998888889999999976 99999888766689999994
No 259
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.48 E-value=2.1e-12 Score=101.03 Aligned_cols=212 Identities=15% Similarity=0.234 Sum_probs=148.6
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-----eeeeeccc------------cCCEEEEEECCCCC--EEEE
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-----WASEIQGH------------KDSVSSLAFSMDGQ--LLAS 124 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~------------~~~i~~~~~~~~~~--~l~~ 124 (290)
.+-|.++.|.. .|.+||||..+|.|.+|.-.... ....++.| ...|..+.|.++++ .++.
T Consensus 25 adiis~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDH-YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEeec-ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 45688999998 88999999999999999765432 22233333 34688999998665 6777
Q ss_pred EeCCCcEEEEcCCCCce-----------------------------------EEEE-ecCCCCEEEEEEcCCCCEEEEee
Q 022910 125 GGLDGLVQIWDPSSGNL-----------------------------------KCTL-EGPGGGVEWVSWHPRGHIVLAGS 168 (290)
Q Consensus 125 ~~~dg~i~i~d~~~~~~-----------------------------------~~~~-~~~~~~i~~i~~~~~~~~l~~~~ 168 (290)
.+.|.+|++|.+..... .+.+ .+|...|.++.++.+...++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 78899999998743210 0111 34667789999999888888765
Q ss_pred CCCeEEEEECCccc-E--EEeeecC-----CCCeEEEEEcC-CCCEEEEEeCCCeEEEEcCCCCeee----EEEeC--CC
Q 022910 169 EDSTVWMWNADRAA-Y--LNMFSGH-----GSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENI----HVIRG--HP 233 (290)
Q Consensus 169 ~dg~i~i~d~~~~~-~--~~~~~~~-----~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~--~~ 233 (290)
|-.|.+|+++-.. . +--++++ ..-|++..|+| ..+.|+-++..|+|++-|++....- ..+.. .+
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 5789999987432 1 2222222 34588999999 5677888889999999999843211 11110 00
Q ss_pred -------CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc-CCCcEEEEEccCC
Q 022910 234 -------YHTEGLTCLTISADSTLALSGSKDGSVHMVNI-TTGKVVSSLVSHT 278 (290)
Q Consensus 234 -------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~-~~~~~~~~~~~~~ 278 (290)
.--+.|..+.|++.|+|+++-.. -+|++||+ ...+++.+++.|.
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~ 314 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHE 314 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehH
Confidence 12346888999999999997654 48999999 5677888887763
No 260
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1e-11 Score=105.94 Aligned_cols=220 Identities=15% Similarity=0.262 Sum_probs=161.4
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe---------------eeeeeccccCCEEEEEECCCCCEEEEEeCC
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---------------WASEIQGHKDSVSSLAFSMDGQLLASGGLD 128 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 128 (290)
.....|++|+. ...++|+|+.||.+++..+.+.. ...++.+|...|.-+.|+.+.+.|-+...+
T Consensus 14 nvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 45678999998 77899999999999999886521 223467899999999999999999999999
Q ss_pred CcEEEEcCCCCceEEEE--ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE----------------------
Q 022910 129 GLVQIWDPSSGNLKCTL--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL---------------------- 184 (290)
Q Consensus 129 g~i~i~d~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------------------- 184 (290)
|.|.+|-+-.+.....+ ....+-|.+|+|+.+|..++....||.|.+=.+...+.-
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 99999998777544322 224556889999999999888888887766544332110
Q ss_pred ------------------------------EeeecCCCCeEEEEEc--------CCCCEEEEEeCCCeEEEEcCCCCeee
Q 022910 185 ------------------------------NMFSGHGSSVTCGDFT--------PDGKTICTGSDDATLRVWNPKSGENI 226 (290)
Q Consensus 185 ------------------------------~~~~~~~~~i~~~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~~~ 226 (290)
..+......|..+.|. |+...|+++...|.+.+..-.+....
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 0001112234455553 35677888888888888765555544
Q ss_pred EEEeCCCCcccCeEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910 227 HVIRGHPYHTEGLTCLTISADSTLALSGSKD---------GSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d 289 (290)
..+. ....+....|+++|.+|++++.+ +.|.+|. .-|+.+.+++.....|++++|-..
T Consensus 253 vv~d----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~ 319 (1189)
T KOG2041|consen 253 VVVD----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGT 319 (1189)
T ss_pred eEEe----cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCC
Confidence 4554 34668889999999999998864 2566665 468889999988899999999643
No 261
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=1.6e-12 Score=114.59 Aligned_cols=147 Identities=22% Similarity=0.361 Sum_probs=126.2
Q ss_pred ECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE-EEecCCC
Q 022910 72 CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC-TLEGPGG 150 (290)
Q Consensus 72 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~ 150 (290)
+++ ..-++++|+.-+.|.+|+....+....+.+|.+.|..+.|+.+|+++++.|.|.++++|.+.+.+... ..-+|..
T Consensus 141 ~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa 219 (967)
T KOG0974|consen 141 DSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA 219 (967)
T ss_pred ccC-cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc
Confidence 344 56788899999999999998555455688999999999999999999999999999999999987765 5567999
Q ss_pred CEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEcCCC
Q 022910 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (290)
Q Consensus 151 ~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 222 (290)
.+..++|+|+ .+++++.|.+.++|... +..+..+..|. ..|..++..+..-.+++++.||.+++|++..
T Consensus 220 Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999999988 99999999999999765 34444666654 5789999999999999999999999999864
No 262
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.43 E-value=3.6e-10 Score=105.90 Aligned_cols=202 Identities=11% Similarity=0.097 Sum_probs=137.5
Q ss_pred EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccc-----------------cCCEEEEEECC-CCCEEEEEeCC
Q 022910 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH-----------------KDSVSSLAFSM-DGQLLASGGLD 128 (290)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----------------~~~i~~~~~~~-~~~~l~~~~~d 128 (290)
...+++.++++.++++-..++.|+++++.++.. .++.+- -..-..++|+| ++..+++.+.+
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 477888884444555555667899999877543 222110 11336799999 55566676778
Q ss_pred CcEEEEcCCCCceEEEEecC---------------CCCEEEEEEcCCCCEEE-EeeCCCeEEEEECCcccEEEeeec---
Q 022910 129 GLVQIWDPSSGNLKCTLEGP---------------GGGVEWVSWHPRGHIVL-AGSEDSTVWMWNADRAAYLNMFSG--- 189 (290)
Q Consensus 129 g~i~i~d~~~~~~~~~~~~~---------------~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~--- 189 (290)
+.|++|+..++... .+.+. ......|+++|++..|+ +-+.++.|++||+.++.......+
T Consensus 705 ~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 705 HQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 99999998876543 22111 12356799999988554 555678999999987643211100
Q ss_pred ------------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCC----------CCcccCeEE
Q 022910 190 ------------------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH----------PYHTEGLTC 241 (290)
Q Consensus 190 ------------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~~~v~~ 241 (290)
.-.....++++++|+++++-+.++.|++||..++......... ...-.....
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence 0113468899999998888899999999999877654332210 001235678
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 022910 242 LTISADSTLALSGSKDGSVHMVNITTGKV 270 (290)
Q Consensus 242 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 270 (290)
++++++|+++++-+.++.|++||+.+++.
T Consensus 864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 864 LALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99999999999888999999999988765
No 263
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.42 E-value=2.5e-11 Score=95.14 Aligned_cols=158 Identities=18% Similarity=0.353 Sum_probs=124.7
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccC----CeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcC---
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQ----GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP--- 136 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~--- 136 (290)
..+++++.+.+ ....|++|-..|++.-+.+.. ....+....|..++..+.|+....++++.+.|..+.---.
T Consensus 68 P~~~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~ 146 (404)
T KOG1409|consen 68 PSPCSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG 146 (404)
T ss_pred CCCceEeeeec-cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccC
Confidence 46788999998 778888999999999887653 3445556678888888888877777777766643322111
Q ss_pred --------------------------------------CCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEEC
Q 022910 137 --------------------------------------SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178 (290)
Q Consensus 137 --------------------------------------~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~ 178 (290)
..-.++.++.+|.+.+.+++|.|....|++|..|..+.+||+
T Consensus 147 ~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi 226 (404)
T KOG1409|consen 147 NRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDI 226 (404)
T ss_pred CcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEec
Confidence 112345667889999999999999999999999999999999
Q ss_pred Cccc-EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCC
Q 022910 179 DRAA-YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (290)
Q Consensus 179 ~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 222 (290)
-..+ ....+.+|...|..+...+--+.+++++.||.|.+|+++.
T Consensus 227 gg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 227 GGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 7654 3456678999999999888888999999999999999864
No 264
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.42 E-value=1.3e-11 Score=96.70 Aligned_cols=214 Identities=17% Similarity=0.291 Sum_probs=157.1
Q ss_pred CCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC-Ceeeeeec-cccCCEEEEEECCCCCEEEEEeCCC
Q 022910 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDG 129 (290)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg 129 (290)
..+..++.++||.+.|++...-| ...-+++.+.|.+++||--.. ++.-..+. .-..+++++.+.+....|++|-..|
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred cchhhhhhhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecc
Confidence 34567788999999999999888 555567999999999996443 33222222 2346789999999999999999999
Q ss_pred cEEEEcCC----CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEE-------------------------------
Q 022910 130 LVQIWDPS----SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW------------------------------- 174 (290)
Q Consensus 130 ~i~i~d~~----~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~------------------------------- 174 (290)
++.-+.+. .....+.+..|...+..+-|+....++++.+.|..+.
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fv 170 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFV 170 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEe
Confidence 99888653 3344445556667777777666555666555544332
Q ss_pred --------EEEC--CcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeee-EEEeCCCCcccCeEEEE
Q 022910 175 --------MWNA--DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI-HVIRGHPYHTEGLTCLT 243 (290)
Q Consensus 175 --------i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~ 243 (290)
+..+ ....++.++.+|...+++++|.|....|++|..|..+.+||+--.+-+ ..+.+ |...|..+.
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g---h~~kV~~l~ 247 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG---HNDKVQALS 247 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc---chhhhhhhh
Confidence 2211 112346677889999999999999999999999999999999654432 22333 777888888
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCc
Q 022910 244 ISADSTLALSGSKDGSVHMVNITTGK 269 (290)
Q Consensus 244 ~~~~~~~l~~~~~dg~i~~wd~~~~~ 269 (290)
..+--+.|.+++.||.|.+|+.+..+
T Consensus 248 ~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 248 YAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhhheeeeeccCCCeEEEEecccee
Confidence 88878899999999999999987543
No 265
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.7e-10 Score=95.79 Aligned_cols=213 Identities=13% Similarity=0.156 Sum_probs=145.0
Q ss_pred cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe-----C-----CCcEEEE
Q 022910 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-----L-----DGLVQIW 134 (290)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~-----dg~i~i~ 134 (290)
.+++..++++ +++++|.+. +..++|++...+..+...... .++++.|+|-+.+|.+-- . .-.+.+|
T Consensus 35 ~~~~v~~~S~-~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 35 RPCNVFAYSN-NGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CcceeEEEcC-CCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 3467778888 888887654 688999999988655544422 789999999999887631 1 2346788
Q ss_pred cCCCCceEEE----------------------------------------EecCCCCEEEEEEcCCC--CEEEE-----e
Q 022910 135 DPSSGNLKCT----------------------------------------LEGPGGGVEWVSWHPRG--HIVLA-----G 167 (290)
Q Consensus 135 d~~~~~~~~~----------------------------------------~~~~~~~i~~i~~~~~~--~~l~~-----~ 167 (290)
++.++..... -+.|...|+.+.++|.+ ..+|+ .
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k 190 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKK 190 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCC
Confidence 8776322111 01234456777777752 23332 2
Q ss_pred eCCCeEEEEECCcc---------------------------------------------------------cEEEeeecC
Q 022910 168 SEDSTVWMWNADRA---------------------------------------------------------AYLNMFSGH 190 (290)
Q Consensus 168 ~~dg~i~i~d~~~~---------------------------------------------------------~~~~~~~~~ 190 (290)
+.-+.++||...-. ...-. -..
T Consensus 191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~-L~k 269 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP-LLK 269 (566)
T ss_pred CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe-cCC
Confidence 33455666654310 00000 013
Q ss_pred CCCeEEEEEcCCCCEEEE--EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC---CCcEEEEEc
Q 022910 191 GSSVTCGDFTPDGKTICT--GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGSVHMVNI 265 (290)
Q Consensus 191 ~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~ 265 (290)
.++|.++.|+|+++-|++ |..-..+.|||++ +.++..+ ..++-+++-|+|.|++|+.+|- -|.|-|||+
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df-----~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF-----PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC-----CCCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 689999999999987765 5567889999997 4555544 3567788999999999988876 479999999
Q ss_pred CCCcEEEEEccCCCcEEEEEEecCC
Q 022910 266 TTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 266 ~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
.+.+++.++.... -+-+.|+|||
T Consensus 344 ~n~K~i~~~~a~~--tt~~eW~PdG 366 (566)
T KOG2315|consen 344 PNRKLIAKFKAAN--TTVFEWSPDG 366 (566)
T ss_pred cchhhccccccCC--ceEEEEcCCC
Confidence 9999999998743 4456799997
No 266
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.39 E-value=2.5e-10 Score=86.80 Aligned_cols=222 Identities=14% Similarity=0.095 Sum_probs=148.3
Q ss_pred EEEEECCC----CCcEEEEecCCCcEEEEEccCCeeeeee-ccccCCEEEEEECCC-CCEEEEEeCCCcEEEEcCCCCce
Q 022910 68 YSVACSPT----DATLVATGGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGNL 141 (290)
Q Consensus 68 ~~~~~~~~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~ 141 (290)
..+.|.|. .--+||.|+..|...+|...+.+....+ ..|...|+-+.=.-+ ..-+..++.|.++++.++..+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 34666662 2247889999999999999876543332 334333322211112 22466778888888888776544
Q ss_pred EEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc-E-EE-eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 022910 142 KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-Y-LN-MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218 (290)
Q Consensus 142 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~-~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 218 (290)
...+....-...+++++++++++++.+....|..|.+.... . ++ ........-.+..|+.....+|++.+||++.||
T Consensus 151 ~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 151 KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIY 230 (344)
T ss_pred cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEE
Confidence 33332222337889999999999999999999999987542 2 22 222334455678899999999999999999999
Q ss_pred cCCCCeeeEEE--eCCCCcccCeEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCcEEEEEcc-------CC-CcEEEEEE
Q 022910 219 NPKSGENIHVI--RGHPYHTEGLTCLTISADST--LALSGSKDGSVHMVNITTGKVVSSLVS-------HT-DSIECIGF 286 (290)
Q Consensus 219 d~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~wd~~~~~~~~~~~~-------~~-~~v~~i~~ 286 (290)
|++....+... ...+.|.+.+..+.|++.|. +|+..-.-+.+.+.|+++++..+.+.. |. ..|.+..|
T Consensus 231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f 310 (344)
T KOG4532|consen 231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNF 310 (344)
T ss_pred EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccc
Confidence 99976543222 22233889999999998553 566665678999999999876555432 22 23666666
Q ss_pred ecC
Q 022910 287 SRS 289 (290)
Q Consensus 287 s~d 289 (290)
+.+
T Consensus 311 ~~~ 313 (344)
T KOG4532|consen 311 NNE 313 (344)
T ss_pred cCC
Confidence 543
No 267
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.37 E-value=1.3e-11 Score=96.70 Aligned_cols=202 Identities=15% Similarity=0.272 Sum_probs=141.7
Q ss_pred cCEEEEEECCCC-CcEEEEecCCCcEEEEEccCCeeee-----------------------------------e-ecccc
Q 022910 65 DEVYSVACSPTD-ATLVATGGGDDKGFFWRINQGDWAS-----------------------------------E-IQGHK 107 (290)
Q Consensus 65 ~~v~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~-----------------------------------~-~~~~~ 107 (290)
..|..+.|.+++ ...++..+.|.+|++|.+....... . -..|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 478899998853 3466677889999999875321100 0 03578
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceE---EEEecC-----CCCEEEEEEcCC-CCEEEEeeCCCeEEEEEC
Q 022910 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK---CTLEGP-----GGGVEWVSWHPR-GHIVLAGSEDSTVWMWNA 178 (290)
Q Consensus 108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~-----~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~ 178 (290)
..|.++.++.+...++++. |=.|.+|+++-...- .-++.+ ..-|++..|||. .++|+-++..|+|++.|+
T Consensus 165 yhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm 243 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM 243 (433)
T ss_pred eEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence 8899999999999888865 678999998643221 222222 235788899995 567888888999999999
Q ss_pred CcccEE----E------------eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC-CCCeeeEEEeCCCCcc-----
Q 022910 179 DRAAYL----N------------MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP-KSGENIHVIRGHPYHT----- 236 (290)
Q Consensus 179 ~~~~~~----~------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~----- 236 (290)
|....- + -+..--..|..+.|++.|+++++-.. -+|++||+ ...+++.+++.+....
T Consensus 244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~ 322 (433)
T KOG1354|consen 244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCS 322 (433)
T ss_pred hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHH
Confidence 854211 1 11122356889999999999988653 58999999 4455666665433211
Q ss_pred ----cC---eEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 022910 237 ----EG---LTCLTISADSTLALSGSKDGSVHMVNITTG 268 (290)
Q Consensus 237 ----~~---v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 268 (290)
.. -..++|+.++.+++||+....++++++..|
T Consensus 323 lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 323 LYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 11 245789988999999999999999996544
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=5.2e-09 Score=83.01 Aligned_cols=228 Identities=15% Similarity=0.219 Sum_probs=150.6
Q ss_pred cCCcCEEEEEECCCCCcEEEEecC---CCcEEEEEccC--Ceeee--eeccccCCEEEEEECCCCCEEEEEeC-CCcEEE
Q 022910 62 GHSDEVYSVACSPTDATLVATGGG---DDKGFFWRINQ--GDWAS--EIQGHKDSVSSLAFSMDGQLLASGGL-DGLVQI 133 (290)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~--~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i 133 (290)
.+.+..+-|+|+| +++.|+++-. .|.|--|.+.. |++.. .......+-..+++++++++++++.. .|.|.+
T Consensus 37 ~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 37 AELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred cccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 4566788899999 6666666543 57788887775 44322 22222334478999999999888865 689999
Q ss_pred EcCCC-CceEE--EEecCCCC----------EEEEEEcCCCCEEEEeeC-CCeEEEEECCcccEEEee---ecCCCCeEE
Q 022910 134 WDPSS-GNLKC--TLEGPGGG----------VEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNMF---SGHGSSVTC 196 (290)
Q Consensus 134 ~d~~~-~~~~~--~~~~~~~~----------i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~---~~~~~~i~~ 196 (290)
+-+.. |.+.. ....|.++ +.+..+.|++++|++.+- .-.|.+|++..++....- -......+.
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH 195 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH 195 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence 99865 43221 12224443 788999999999888765 346999999877543211 135567799
Q ss_pred EEEcCCCCEEEEEeC-CCeEEEEcCCCC-eeeEEEeC---CC---CcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 022910 197 GDFTPDGKTICTGSD-DATLRVWNPKSG-ENIHVIRG---HP---YHTEGLTCLTISADSTLALSGSK-DGSVHMVNITT 267 (290)
Q Consensus 197 ~~~~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~---~~---~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~ 267 (290)
|.|+|++++.++.+. +++|.+|..... ..+..++. .+ ........+.++|+|++|+++.. ...|.+|.+..
T Consensus 196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 999999999876654 899999988763 22222222 11 13456778899999999998854 34788887753
Q ss_pred --CcE--EEEEccCCCcEEEEEEecCC
Q 022910 268 --GKV--VSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 268 --~~~--~~~~~~~~~~v~~i~~s~d~ 290 (290)
+++ +.....+....+.+.|+|+|
T Consensus 276 ~~g~L~~~~~~~teg~~PR~F~i~~~g 302 (346)
T COG2706 276 DGGKLELVGITPTEGQFPRDFNINPSG 302 (346)
T ss_pred CCCEEEEEEEeccCCcCCccceeCCCC
Confidence 322 22222333346677776654
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=4.6e-09 Score=83.31 Aligned_cols=220 Identities=16% Similarity=0.264 Sum_probs=145.8
Q ss_pred EEEEECCCCCcEEEEecCCCcEEEEEccC-Ceeee--eeccccCC----------EEEEEECCCCCEEEEEeC-CCcEEE
Q 022910 68 YSVACSPTDATLVATGGGDDKGFFWRINQ-GDWAS--EIQGHKDS----------VSSLAFSMDGQLLASGGL-DGLVQI 133 (290)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~--~~~~~~~~----------i~~~~~~~~~~~l~~~~~-dg~i~i 133 (290)
+.+++++++..++.+-...|.|.++-++. |.+.. .+..|.++ +....|.|++++|++..- --.|.+
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL 171 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence 77888884444444445568999999865 33222 12234444 889999999999888754 246999
Q ss_pred EcCCCCceEEEEe---cCCCCEEEEEEcCCCCEEEEeeC-CCeEEEEECCcc-cEEEeeec---------CCCCeEEEEE
Q 022910 134 WDPSSGNLKCTLE---GPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRA-AYLNMFSG---------HGSSVTCGDF 199 (290)
Q Consensus 134 ~d~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~---------~~~~i~~~~~ 199 (290)
|++..+++...-. ......+.|.|+|++++.++.+. +++|.+|..... ..+..++. .......|.+
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 9999776542211 34556899999999998887765 889999998763 22222211 2446788999
Q ss_pred cCCCCEEEEEeC-CCeEEEEcCCCC-eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC-cEEEEEcC--CCcEEEEE
Q 022910 200 TPDGKTICTGSD-DATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-SVHMVNIT--TGKVVSSL 274 (290)
Q Consensus 200 ~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~wd~~--~~~~~~~~ 274 (290)
+|+|++|+++.. ...|.+|.+... ..+..+.....+........|+|.+++|+++..++ .|.+|.+. +|++-...
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence 999999988754 235777765432 22333333333455578899999999999988754 67777654 55544333
Q ss_pred c-cCCCcEEEEEEe
Q 022910 275 V-SHTDSIECIGFS 287 (290)
Q Consensus 275 ~-~~~~~v~~i~~s 287 (290)
. .......||.|.
T Consensus 332 ~~~~~p~Pvcv~f~ 345 (346)
T COG2706 332 RYAVVPEPVCVKFL 345 (346)
T ss_pred cccCCCCcEEEEEc
Confidence 3 233456677765
No 270
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.1e-09 Score=93.14 Aligned_cols=172 Identities=12% Similarity=0.111 Sum_probs=116.1
Q ss_pred CEEEEEECCCCCE-EEEEeC---CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEee-C--CCeEEEEECCcc
Q 022910 109 SVSSLAFSMDGQL-LASGGL---DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-E--DSTVWMWNADRA 181 (290)
Q Consensus 109 ~i~~~~~~~~~~~-l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~--dg~i~i~d~~~~ 181 (290)
.+....|+|+|+. ++..+. ...|+++|+.+++...... ..+......|+|+|+.++... . +..|+++++.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 7788999999985 665443 3569999998887655443 455567788999998776543 2 357888998877
Q ss_pred cEEEeeecCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-
Q 022910 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD- 257 (290)
Q Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 257 (290)
.. +.+..+........|+|+|+.|+..+. .+ .|+++|+.+++..+.... .. ....|+|+|++|+..+..
T Consensus 268 ~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~----g~--~~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 268 TL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH----GK--NNSSVSTYKNYIVYSSRET 340 (419)
T ss_pred cE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC----CC--cCceECCCCCEEEEEEcCC
Confidence 64 344433333345679999988876553 23 688889987765333321 11 124899999988776653
Q ss_pred --------CcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 258 --------GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 258 --------g~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
..|.+.++.++.. +.+... .......|+|||
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG 379 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDG 379 (419)
T ss_pred CcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCC
Confidence 3688889887764 444432 233468899987
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.34 E-value=3.6e-09 Score=99.38 Aligned_cols=220 Identities=15% Similarity=0.200 Sum_probs=145.2
Q ss_pred EEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc--------------ccCCEEEEEECCCCCEEEEEe-CCCcEE
Q 022910 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--------------HKDSVSSLAFSMDGQLLASGG-LDGLVQ 132 (290)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~l~~~~-~dg~i~ 132 (290)
..+++++.++.++++-+.++.|++|+... ..+..+.. .-.....+++.++++.|+++. ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788876677888888889999999764 33333321 112357899998888666654 457899
Q ss_pred EEcCCCCceEEEEecC-----------------CCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcccEEEeeec-----
Q 022910 133 IWDPSSGNLKCTLEGP-----------------GGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSG----- 189 (290)
Q Consensus 133 i~d~~~~~~~~~~~~~-----------------~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----- 189 (290)
++|+.++.. .++.+. -.....++++| ++.++++.+.++.|++|+..++... .+.+
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 999877653 333210 11346799999 5666677777899999998776532 2211
Q ss_pred ----------CCCCeEEEEEcCCCCEE-EEEeCCCeEEEEcCCCCeeeEEEeCCC------------------CcccCeE
Q 022910 190 ----------HGSSVTCGDFTPDGKTI-CTGSDDATLRVWNPKSGENIHVIRGHP------------------YHTEGLT 240 (290)
Q Consensus 190 ----------~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~------------------~~~~~v~ 240 (290)
.-.....|+++|+++.| ++-+.++.|++||+.++.......+.. ..-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 11245679999998855 455667899999998765322111000 0011346
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc-------------cCCCcEEEEEEecCC
Q 022910 241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-------------SHTDSIECIGFSRSE 290 (290)
Q Consensus 241 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------------~~~~~v~~i~~s~d~ 290 (290)
.++++++|.++++-+.+++|++||..++....... +.-....+|+++++|
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG 870 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG 870 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC
Confidence 88999999998888899999999998776553321 111256788888875
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.33 E-value=8.9e-10 Score=90.18 Aligned_cols=176 Identities=19% Similarity=0.242 Sum_probs=137.0
Q ss_pred ECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC-cEEEEcCCCCceEEEEecCCC
Q 022910 72 CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG-LVQIWDPSSGNLKCTLEGPGG 150 (290)
Q Consensus 72 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~ 150 (290)
|++.++.+++..+. |...|.+...+-.+. + ++.+.|.-..+..+++-++.|..|| .|-|++..+++.. .+...-+
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-v-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ-V-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLG 402 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE-c-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCcc
Confidence 45556777777764 788888766554333 2 3677798888888888999999999 8999999887744 5555677
Q ss_pred CEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEcCCCCeee
Q 022910 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA----TLRVWNPKSGENI 226 (290)
Q Consensus 151 ~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~ 226 (290)
.|.++..+|+|++++++.....|.++|+.++.....-+...+-|+.++|+|+++++|-+--+| .|++||+.+++..
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 899999999999999999999999999999987666666778899999999999999876555 6999999887764
Q ss_pred EEEeCCCCcccCeEEEEEcCCCCEEEEEe
Q 022910 227 HVIRGHPYHTEGLTCLTISADSTLALSGS 255 (290)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 255 (290)
.... ....=.+-+|.|++++|.--+
T Consensus 483 ~vTT----~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 483 DVTT----PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EecC----CcccccCcccCCCCcEEEEEe
Confidence 4333 223334567889999876543
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.32 E-value=1.9e-09 Score=88.33 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=102.8
Q ss_pred ccCCcCEEEEEECCCCCcEEEEecCCC-cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 022910 61 SGHSDEVYSVACSPTDATLVATGGGDD-KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (290)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 139 (290)
-+|.+.|.-..+.. ++.-++.|..|| .+-||+..+++... +...-+.|.++..+++|++++++.....|.+.|+.++
T Consensus 356 v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 356 VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence 35777888888877 555788899999 89999998877544 4446788999999999999999999999999999999
Q ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCC----eEEEEECCcccEEE
Q 022910 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS----TVWMWNADRAAYLN 185 (290)
Q Consensus 140 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~ 185 (290)
.....-+...+-|+.++|||+++++|-+--+| .|+++|+.+++...
T Consensus 434 nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 434 NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 98777677778899999999999999876655 69999998876543
No 274
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.32 E-value=1.2e-10 Score=101.88 Aligned_cols=183 Identities=16% Similarity=0.211 Sum_probs=138.6
Q ss_pred CcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEE
Q 022910 77 ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS 156 (290)
Q Consensus 77 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~ 156 (290)
+..++.|+....+..+|+.+.+......-..+.|+-|+. +++++.+|...|+|.+-|.++.+.++++..|.+.|..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 344556666667777888877766665544445655554 788999999999999999999999999999999888776
Q ss_pred EcCCCCEEEEeeC---------CCeEEEEECCcccEEEeeecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEcCCCCe-e
Q 022910 157 WHPRGHIVLAGSE---------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGE-N 225 (290)
Q Consensus 157 ~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~ 225 (290)
. .|+.|++++. |..|+|||+|..+.+.-+.-+.++ .-+.|+|. ...+++++..|...+-|..+.. +
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence 5 6889998875 456899999988877666544444 66788883 4678888999999999943221 1
Q ss_pred -eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910 226 -IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (290)
Q Consensus 226 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~ 265 (290)
.......+ ..+.+..++++++++.|+.|..+|.|.+|--
T Consensus 302 ~~~~~~v~p-~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 302 PAGVKMVNP-NGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccceeEEcc-CCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 12222111 4566999999999999999999999999973
No 275
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.31 E-value=1.5e-09 Score=100.15 Aligned_cols=223 Identities=12% Similarity=0.151 Sum_probs=150.6
Q ss_pred cCCcCEEEEEECCCCCcEEEEecCCCcEEEE----EccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC
Q 022910 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFW----RINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (290)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 137 (290)
...+.|.++.|.+ +...++.+..+|.|.++ +..... +.....-...|.+++||||+..|+.++.+++|.+....
T Consensus 73 ~~~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 73 DPNDKIVSFQYLA-DSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred CCCCcEEEEEecc-CCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence 3457899999999 66666777888999999 444332 33333456789999999999999999999998887521
Q ss_pred ---------------C--------CceEEEEec------------------------CCCCEEEEEEcCCCCEEEEeeC-
Q 022910 138 ---------------S--------GNLKCTLEG------------------------PGGGVEWVSWHPRGHIVLAGSE- 169 (290)
Q Consensus 138 ---------------~--------~~~~~~~~~------------------------~~~~i~~i~~~~~~~~l~~~~~- 169 (290)
. |+....|.+ ....-..|+|-.||.++|+.+-
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 0 111111111 1223456889999999999874
Q ss_pred --C---CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEcCCCCeeeEEEeCCC-CcccCeE
Q 022910 170 --D---STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD---DATLRVWNPKSGENIHVIRGHP-YHTEGLT 240 (290)
Q Consensus 170 --d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~ 240 (290)
. ..|+||+-+ |....+.....+--.+++|.|.|++||+... ...|.+|..+ |-....+.... .....|.
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceee
Confidence 2 479999865 6555444444444567899999999988764 3567778754 43333333221 2456799
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCc--EEEEEcc-CCCcEEEEEEecC
Q 022910 241 CLTISADSTLALSGSKDGSVHMVNITTGK--VVSSLVS-HTDSIECIGFSRS 289 (290)
Q Consensus 241 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~-~~~~v~~i~~s~d 289 (290)
.+.|++++..||....|. |.+|-..+.. +-+.+.- ....+..+.|+|.
T Consensus 309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe 359 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPE 359 (928)
T ss_pred EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCC
Confidence 999999999999987665 9999988754 2222221 1234555888874
No 276
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.30 E-value=5.6e-11 Score=94.91 Aligned_cols=161 Identities=21% Similarity=0.194 Sum_probs=112.6
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEcCCCCce----EEEEecCCCCEEEEEEcCCCCEEEEeeCCC---eEEEEECCccc
Q 022910 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL----KCTLEGPGGGVEWVSWHPRGHIVLAGSEDS---TVWMWNADRAA 182 (290)
Q Consensus 110 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~ 182 (290)
...+..++.++++|++..+....++++..... +..+.... .-+++.|..+......+...| .+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-RPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-CcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34455678888999998888877777654432 22222222 234444444444455544444 45555555433
Q ss_pred EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 022910 183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262 (290)
Q Consensus 183 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 262 (290)
...+-+|-+-++.++|+|++++++++..|..|++-.......+..+.. +|..-|..++.-++ ..|++|+.|++|++
T Consensus 144 -~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--GH~eFVS~isl~~~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 144 -CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL--GHKEFVSTISLTDN-YLLLSGSGDKTLRL 219 (390)
T ss_pred -cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc--ccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence 344557889999999999999999999999999977765554444432 28888999998764 56899999999999
Q ss_pred EEcCCCcEEEEEc
Q 022910 263 VNITTGKVVSSLV 275 (290)
Q Consensus 263 wd~~~~~~~~~~~ 275 (290)
||+.+|+++.++.
T Consensus 220 Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 220 WDITSGKLLDTCD 232 (390)
T ss_pred EecccCCcccccc
Confidence 9999999887665
No 277
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.30 E-value=2.6e-11 Score=103.82 Aligned_cols=211 Identities=15% Similarity=0.257 Sum_probs=151.5
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-eeeeeccccCCEEEEEECCCCCEEEEEeCCCcEE
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 132 (290)
......+.||+..|+.+.|+|+.+..+++++.|-.+..||+.+.. .+.....-......++|+-....+.+.+..+.|+
T Consensus 104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~ 183 (1081)
T KOG0309|consen 104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIF 183 (1081)
T ss_pred cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceE
Confidence 445667889999999999999999999999999999999998754 4444444455678899987666666677788999
Q ss_pred EEcCCCC-ceEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCcccEE-EeeecCCCCeEEEEEcCCCC--EEE
Q 022910 133 IWDPSSG-NLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYL-NMFSGHGSSVTCGDFTPDGK--TIC 207 (290)
Q Consensus 133 i~d~~~~-~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~--~l~ 207 (290)
+||++.+ .++..+++|...+..++|.. ....+.+++.||+|+.|+..+.... ........+|..-++.|-|. ++.
T Consensus 184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~m 263 (1081)
T KOG0309|consen 184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIM 263 (1081)
T ss_pred EEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEec
Confidence 9999876 56788888888899998875 3447888999999999998765322 22223456777777777433 322
Q ss_pred EEeCCCeEEEEcCCC----------CeeeEEEeCCCCcccCeEEEEEcCC----------CCEEEEEeCCCcEEEEEcCC
Q 022910 208 TGSDDATLRVWNPKS----------GENIHVIRGHPYHTEGLTCLTISAD----------STLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 208 ~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~dg~i~~wd~~~ 267 (290)
-.-.+..+.+++.++ .++++.+.+ |...|.-..|-.. .-.|+|-+.|..+++|-+.+
T Consensus 264 p~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G---H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 264 PMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG---HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccCCeeeeeccccchhhhhccccCCcceeeecC---cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 222222444444432 245666666 6666666555431 12689999999999998754
No 278
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=2.2e-10 Score=99.06 Aligned_cols=185 Identities=15% Similarity=0.172 Sum_probs=135.1
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 143 (290)
...++|++++. ..|+-|+.+|.|++++....- .+...|... ...|.++++||.||+|.|-.+-+.+...
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 45777888764 688999999999999976433 333345444 6689999999999999999999888777
Q ss_pred EEecCCCCEEEEEEcCC-----CCEEEEeeCCCeEEEEECCc--ccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 022910 144 TLEGPGGGVEWVSWHPR-----GHIVLAGSEDSTVWMWNADR--AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216 (290)
Q Consensus 144 ~~~~~~~~i~~i~~~~~-----~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 216 (290)
++. ...++.+++++|+ .+.+++|+..| +.++.-+- .+....+....++|.++.|. |+++|-++.+| |+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK 182 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence 766 4457999999997 56899999988 77665321 11112455677899999995 77888887777 89
Q ss_pred EEcCCCCeeeEEEeCCCC---cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910 217 VWNPKSGENIHVIRGHPY---HTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (290)
Q Consensus 217 i~d~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 266 (290)
|||+.+.+.+..+..... ...-...+.|.++.+ |+.| +..+|++..++
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 999998887766654321 122345678886554 4444 44588888887
No 279
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.29 E-value=6.5e-11 Score=89.50 Aligned_cols=169 Identities=20% Similarity=0.258 Sum_probs=111.0
Q ss_pred CCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee-eeeeccccCCEEEEEECCCCCEEEEEeC----
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQGHKDSVSSLAFSMDGQLLASGGL---- 127 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~---- 127 (290)
...+.+.+..|+++-.+-+.+- -..-++++..||.+.+++.+.-.. ..++..-...-.+.+....++.+.++..
T Consensus 78 ~i~~~~~~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n 156 (319)
T KOG4714|consen 78 GIDPFKVLAKNSEIDPNDACTM-TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWN 156 (319)
T ss_pred CcCceeeeeccCCCCCcccccc-cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEe
Confidence 3445555555655544444443 445688999999999999876211 1112111111222333344555554422
Q ss_pred -CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCC-CCEEEEeeCCCeEEEEECCccc-EEEeeecCCCCeEEEEEcC-CC
Q 022910 128 -DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTP-DG 203 (290)
Q Consensus 128 -dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~-~~ 203 (290)
-+..++|+++..+.....+.....+++++-+|. .+.+++|+.+|.+.+||.+... +...+..|+.++..+-|+| ++
T Consensus 157 ~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p 236 (319)
T KOG4714|consen 157 AQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP 236 (319)
T ss_pred eccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc
Confidence 345667776654433332323345999999984 5578888999999999999874 4456778999999999999 77
Q ss_pred CEEEEEeCCCeEEEEcCCC
Q 022910 204 KTICTGSDDATLRVWNPKS 222 (290)
Q Consensus 204 ~~l~~~~~dg~i~i~d~~~ 222 (290)
..|++++.||.+-.||..+
T Consensus 237 ~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 237 EHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hheeEecCCCcEEEEcCCC
Confidence 8999999999999999874
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.27 E-value=1.7e-10 Score=92.21 Aligned_cols=161 Identities=17% Similarity=0.190 Sum_probs=113.0
Q ss_pred CEEEEEECCCCCcEEEEecCCCcEEEEEccCCee----eeeeccccCCEEEEEECCCCCEEEEEe---CCCcEEEEcCCC
Q 022910 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDW----ASEIQGHKDSVSSLAFSMDGQLLASGG---LDGLVQIWDPSS 138 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~ 138 (290)
.+..+..++ ++.+||++..+....++++..... ..... -...-+++.|..+......+. ....+.+|....
T Consensus 64 a~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 64 APALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred cccccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 344455666 788888888777766776654332 22222 222334555555555444443 345566666665
Q ss_pred CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee-ecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 022910 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-SGHGSSVTCGDFTPDGKTICTGSDDATLRV 217 (290)
Q Consensus 139 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 217 (290)
+... .+-+|-..++.++|+||+.+|+++..|..|++-.......+..+ -+|..-|..+++-++ ..|++++.|++|++
T Consensus 142 ~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 142 GRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL 219 (390)
T ss_pred cCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence 4443 44578899999999999999999999999999887665555444 469999999999864 45899999999999
Q ss_pred EcCCCCeeeEEEe
Q 022910 218 WNPKSGENIHVIR 230 (290)
Q Consensus 218 ~d~~~~~~~~~~~ 230 (290)
||+++++.+.++.
T Consensus 220 Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 220 WDITSGKLLDTCD 232 (390)
T ss_pred EecccCCcccccc
Confidence 9999999876553
No 281
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.27 E-value=2.6e-11 Score=103.84 Aligned_cols=232 Identities=19% Similarity=0.267 Sum_probs=157.6
Q ss_pred CCCceeeeccC-CcCEEEEEECCCCC-cEEEEecCCCcEEEEEccC---CeeeeeeccccCCEEEEEECCCCC-EEEEEe
Q 022910 53 PDDSTHIFSGH-SDEVYSVACSPTDA-TLVATGGGDDKGFFWRINQ---GDWASEIQGHKDSVSSLAFSMDGQ-LLASGG 126 (290)
Q Consensus 53 ~~~~~~~~~~h-~~~v~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~ 126 (290)
|..+.+.+..- .-.|-.+.|+|... .+-++......-.+|++.. ......+.+|...|+.+.|+|+.. .+++++
T Consensus 55 p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcs 134 (1081)
T KOG0309|consen 55 PFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCS 134 (1081)
T ss_pred CCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecc
Confidence 44444444322 23466788887422 2444444556677999865 344556778999999999998765 799999
Q ss_pred CCCcEEEEcCCCCc-eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcC-CC
Q 022910 127 LDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DG 203 (290)
Q Consensus 127 ~dg~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~ 203 (290)
.|-.+..||+++.. ++..+..-......++|+.....+++.+....|.+||++.+ .++..+++|...|..++|.. ..
T Consensus 135 vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~ 214 (1081)
T KOG0309|consen 135 VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY 214 (1081)
T ss_pred ccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh
Confidence 99999999998764 45555555556788999987777777888889999999986 56778888888999999876 33
Q ss_pred CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC--CCCEEEEEeCCCcEEEEE---------cCC-CcEE
Q 022910 204 KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA--DSTLALSGSKDGSVHMVN---------ITT-GKVV 271 (290)
Q Consensus 204 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd---------~~~-~~~~ 271 (290)
..+.+++.||+|++||............. ...+|..-++.| +|.++.---.+..+.+++ +.+ .+++
T Consensus 215 s~~~s~~~d~tvkfw~y~kSt~e~~~~vt--t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pV 292 (1081)
T KOG0309|consen 215 SEIMSSSNDGTVKFWDYSKSTTESKRTVT--TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPV 292 (1081)
T ss_pred hhhcccCCCCceeeecccccccccceecc--ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcce
Confidence 56788999999999998754332211111 345666666666 333333222222444443 332 4689
Q ss_pred EEEccCCCcEEEEEE
Q 022910 272 SSLVSHTDSIECIGF 286 (290)
Q Consensus 272 ~~~~~~~~~v~~i~~ 286 (290)
++|.+|...|..+.|
T Consensus 293 h~F~GH~D~V~eFlW 307 (1081)
T KOG0309|consen 293 HTFVGHDDVVLEFLW 307 (1081)
T ss_pred eeecCcchHHHHHhh
Confidence 999999877655444
No 282
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.26 E-value=4.8e-08 Score=77.55 Aligned_cols=209 Identities=16% Similarity=0.192 Sum_probs=151.1
Q ss_pred CEEEEEECCCCCcEEEEecCCCc-EEEEEccCCeeeeeeccccCCEE--EEEECCCCCEEEEEeC-----CCcEEEEcCC
Q 022910 66 EVYSVACSPTDATLVATGGGDDK-GFFWRINQGDWASEIQGHKDSVS--SLAFSMDGQLLASGGL-----DGLVQIWDPS 137 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~l~~~~~-----dg~i~i~d~~ 137 (290)
....++.+|..+..++.+..-|+ ..+||..+++....+....+.-. .-.|+++|++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 44578889977788888877765 78899999988877764433321 3679999999998743 5899999998
Q ss_pred -CCceEEEEecCCCCEEEEEEcCCCCEEEEeeC------------------CCeEEEEECCcccEEEeee----cCCCCe
Q 022910 138 -SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE------------------DSTVWMWNADRAAYLNMFS----GHGSSV 194 (290)
Q Consensus 138 -~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~----~~~~~i 194 (290)
+.+.+..+..+.-....+.+.|+++.|+++.. +..+.+.|..+++.+.+.. .|...|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 66778888888777888999999987777632 2356667778888776633 367789
Q ss_pred EEEEEcCCCCEEEEEeCCCe-------EEEEcCCCCeeeEEEeCCC----CcccCeEEEEEcCCCCEEEEEe-CCCcEEE
Q 022910 195 TCGDFTPDGKTICTGSDDAT-------LRVWNPKSGENIHVIRGHP----YHTEGLTCLTISADSTLALSGS-KDGSVHM 262 (290)
Q Consensus 195 ~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~ 262 (290)
+.|++.++|..++..-..|. |.+++.. ..+..+.... .....+-+|++++++.++++.+ ..+.+.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 99999999877666544432 4444432 3233333211 1346789999999998775554 5679999
Q ss_pred EEcCCCcEEEEEcc
Q 022910 263 VNITTGKVVSSLVS 276 (290)
Q Consensus 263 wd~~~~~~~~~~~~ 276 (290)
||..+++.+....-
T Consensus 244 ~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 244 WDAATGRLLGSVPL 257 (305)
T ss_pred EECCCCCEeecccc
Confidence 99999998876653
No 283
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=3.4e-11 Score=111.85 Aligned_cols=165 Identities=16% Similarity=0.286 Sum_probs=136.8
Q ss_pred ccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec-CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE
Q 022910 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL 184 (290)
Q Consensus 106 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 184 (290)
+-..|.++.-+|...+.++|+.||.+++|....++.+..++. ....++.+.|+.+|+.+.++..||.+.+|.+. .++.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence 456788888889999999999999999999999988877763 33689999999999999999999999999987 6677
Q ss_pred EeeecCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 022910 185 NMFSGHGSSVTCGDFTPDGKTICTGS---DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (290)
Q Consensus 185 ~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 261 (290)
...+.|......+.|-. ..+++++ .++.+.+||..-......+. ..|..+++++++.|..++|++|+.+|.|+
T Consensus 2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 77888998888888864 5566543 47889999975433323332 34899999999999999999999999999
Q ss_pred EEEcCCCcEEEEEc
Q 022910 262 MVNITTGKVVSSLV 275 (290)
Q Consensus 262 ~wd~~~~~~~~~~~ 275 (290)
+||++..+++++++
T Consensus 2362 l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQ 2375 (2439)
T ss_pred EeehHHHHHHHHhh
Confidence 99999887766654
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.25 E-value=7.6e-09 Score=79.77 Aligned_cols=196 Identities=17% Similarity=0.153 Sum_probs=118.7
Q ss_pred EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc-------ccCCEEEEEECCCC------CEEEEEeCCCcEEE
Q 022910 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-------HKDSVSSLAFSMDG------QLLASGGLDGLVQI 133 (290)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------~~~~i~~~~~~~~~------~~l~~~~~dg~i~i 133 (290)
=+.++|+| ++.+||.+...|+|++||+.... +..+.. -...|..|.|.+.. ..|++....|.++-
T Consensus 46 WRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 46 WRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred heEEEECC-CCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 36789999 88899999999999999997643 223321 23567788885432 14666677888887
Q ss_pred EcCCC-----CceEEEEec---CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCE
Q 022910 134 WDPSS-----GNLKCTLEG---PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT 205 (290)
Q Consensus 134 ~d~~~-----~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 205 (290)
|-+.. .+....+.. ....|.++.|+|..++|++|+.... +.+. -++....+++-....+..+
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPY 193 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCc
Confidence 76532 222333332 3557999999999998888875432 0000 0011122222222111111
Q ss_pred -E-EEEeCCCe------EEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC
Q 022910 206 -I-CTGSDDAT------LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH 277 (290)
Q Consensus 206 -l-~~~~~dg~------i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 277 (290)
. ++...++. ..+|.+-+.+. +.........|..|..||||..||+...+|.|.+|++.+-++.++...+
T Consensus 194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~---fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRRGLLRIPSFKF---FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEEccccCccccccccccceeeccceee---eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 1 11111211 12333322221 1111225678999999999999999999999999999998887776544
No 285
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=7.8e-12 Score=109.01 Aligned_cols=207 Identities=17% Similarity=0.241 Sum_probs=157.0
Q ss_pred CCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC-
Q 022910 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG- 129 (290)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg- 129 (290)
...-.+.+.|+.|...-+|++|+- +.+.|+.|+..|.|++|++.+|........|..+|+-+.=+.+|..+++.+...
T Consensus 1088 FSRFr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred HhhcccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccC
Confidence 345667888899999999999998 888999999999999999999999999999999999999999998766654432
Q ss_pred -cEEEEcCCC-CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee-c---CCCCeEEEEEcCCC
Q 022910 130 -LVQIWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-G---HGSSVTCGDFTPDG 203 (290)
Q Consensus 130 -~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~---~~~~i~~~~~~~~~ 203 (290)
...+|++.+ +...++|.. -.++.|+.....-+.|+......+||++++.++.++- + ....-.+..|+|..
T Consensus 1167 PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred chHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence 467999854 445555543 3568888765566667777789999999987766532 1 22223677899988
Q ss_pred CEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910 204 KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS 276 (290)
Q Consensus 204 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 276 (290)
.+++ .|| .+||++..+.++.+...... ..-.|+|.|.-++.-+ -|||+++.+++++.+.
T Consensus 1243 ~LIl---ndG--vLWDvR~~~aIh~FD~ft~~----~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1243 TLIL---NDG--VLWDVRIPEAIHRFDQFTDY----GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPS 1301 (1516)
T ss_pred ceEe---eCc--eeeeeccHHHHhhhhhheec----ccccccCCCceEEeec-----hhhhhHHHHHHhcCcc
Confidence 7765 456 47999988877777653211 1235999998888765 4899999888776654
No 286
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.23 E-value=5.9e-11 Score=89.70 Aligned_cols=197 Identities=16% Similarity=0.168 Sum_probs=121.7
Q ss_pred EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeee------------eeccccCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS------------EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (290)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (290)
|+.+.+. ....|+++..++.+..+...++.+.. .+..|+.+-.+-+.+-.++.++++..||.+.++
T Consensus 39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 5666665 34567777777766666544333222 222233332222333345679999999999999
Q ss_pred cCCCCceE-EEEecCCCCEEEEEEcCCCCEEEEeeC-----CCeEEEEECCcccEEEeeecCCCCeEEEEEcCC-CCEEE
Q 022910 135 DPSSGNLK-CTLEGPGGGVEWVSWHPRGHIVLAGSE-----DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKTIC 207 (290)
Q Consensus 135 d~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~ 207 (290)
+.+.-..+ ..+........+.++...++.+.++.- -+..+.|+++..+.+..-......|.+++-+|. ...++
T Consensus 117 s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~ 196 (319)
T KOG4714|consen 117 STDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC 196 (319)
T ss_pred echHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence 87652111 111111111222333334555555432 245666776655433322223344999999994 56677
Q ss_pred EEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q 022910 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~ 267 (290)
+|+.||.+.+||.++...+. .....|+.+++.+-|+| ++..|++++.||.+..||..+
T Consensus 197 cgt~dg~~~l~d~rn~~~p~--S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPV--SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCeEEEEEcccccchH--HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 89999999999999874332 22334899999999999 788999999999999999763
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=3.6e-11 Score=100.06 Aligned_cols=174 Identities=13% Similarity=0.237 Sum_probs=129.9
Q ss_pred eeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCC-------CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCe
Q 022910 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST 172 (290)
Q Consensus 100 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~ 172 (290)
+..+.+|+..|+.++--.+.+.+++++.|.+|++|.++. ..+..+++.|+.+|..+.|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 344668999998888777788899999999999999863 23566778899999999998887777765 688
Q ss_pred EEEEECCcccEEEeeec--CCCCeEEEEEcC--CCCEEEEE-eCCCeEEEEcCCCCeeeEEEeCC--CCcccCeEEEEEc
Q 022910 173 VWMWNADRAAYLNMFSG--HGSSVTCGDFTP--DGKTICTG-SDDATLRVWNPKSGENIHVIRGH--PYHTEGLTCLTIS 245 (290)
Q Consensus 173 i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~ 245 (290)
|.+||.--++++..+.. ..+.+..+..-| +...+++| +...+|+++|.+.+.-...++.. +.....+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 99999776665553321 122233333333 33444444 67889999999987655444432 3355678999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910 246 ADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (290)
Q Consensus 246 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 275 (290)
+.|+.++++-..|.|.+.|.++|+.+.+..
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 999999999999999999999999887543
No 288
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=5.8e-11 Score=93.18 Aligned_cols=161 Identities=12% Similarity=0.191 Sum_probs=121.0
Q ss_pred EEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc-----cEEEeeecCCCCeEEE
Q 022910 123 ASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-----AYLNMFSGHGSSVTCG 197 (290)
Q Consensus 123 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~i~~~ 197 (290)
++.+.+-.+-+-++.++-. +.|. ..+.|.++.|+..+++++.|+.+|.|..+|++.+ .+...+ -|.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence 4445566788888887753 2333 4556888999988999999999999999999875 233444 388899998
Q ss_pred EEcC-CCCEEEEEeCCCeEEEEcCCCCee---eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 022910 198 DFTP-DGKTICTGSDDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS 273 (290)
Q Consensus 198 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 273 (290)
.... ++++|++++.+|.|.+||++..++ +..+.+|... ..-.-+...+....+++++.|...|+|.++.|.++.+
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~-~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNL-SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccc-ccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 8776 788999999999999999998777 6666664321 2222234456677888899999999999999999999
Q ss_pred EccCC----CcEEEEEEe
Q 022910 274 LVSHT----DSIECIGFS 287 (290)
Q Consensus 274 ~~~~~----~~v~~i~~s 287 (290)
++-.. ..+.+++|.
T Consensus 384 ipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 384 IPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cCCCCccccccccceehh
Confidence 87533 245666664
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=2.6e-09 Score=92.39 Aligned_cols=212 Identities=13% Similarity=0.102 Sum_probs=159.3
Q ss_pred CCCceeeeccCCcCEEEEEECCC-----------CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC---C
Q 022910 53 PDDSTHIFSGHSDEVYSVACSPT-----------DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM---D 118 (290)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~~~-----------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~---~ 118 (290)
..+.++.+.-|+..|+.+.|.|- ...+||++...|.|.+||...+..+..+..|..++..++|-+ +
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDD 123 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCc
Confidence 46678888899999999999872 234788888999999999999999999999999999999976 3
Q ss_pred C-CEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEECCc-------ccEEEeeec
Q 022910 119 G-QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADR-------AAYLNMFSG 189 (290)
Q Consensus 119 ~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~ 189 (290)
. ..|++.....+|.+|+..+|+....+........|+.+.| +.+++..-+..|.+.+.+.-. ++..+.-..
T Consensus 124 Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd 203 (1062)
T KOG1912|consen 124 SRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSD 203 (1062)
T ss_pred chheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecC
Confidence 3 3666777788999999999999888877777788899998 566777777778888776532 122222222
Q ss_pred CCC-------------------------CeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEE
Q 022910 190 HGS-------------------------SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI 244 (290)
Q Consensus 190 ~~~-------------------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 244 (290)
|.. ....++|+|.-+-++-......+.++|++-..++..+.. ..+.+..+.|
T Consensus 204 ~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi---er~~akfv~v 280 (1062)
T KOG1912|consen 204 HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI---ERGGAKFVDV 280 (1062)
T ss_pred ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe---ccCCcceeEe
Confidence 211 012356788555444445567799999998888877775 4556677788
Q ss_pred cCCC--CEEEEEeCCCcEEEEEcCC
Q 022910 245 SADS--TLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 245 ~~~~--~~l~~~~~dg~i~~wd~~~ 267 (290)
-|++ ..|++.-.+|.+.+|-.+.
T Consensus 281 lP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 281 LPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ccCCCcceEEEEecCCeEEEEEeec
Confidence 7755 5799999999999997654
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.20 E-value=2.2e-09 Score=81.72 Aligned_cols=200 Identities=12% Similarity=0.032 Sum_probs=128.4
Q ss_pred cCCCcEEEEEccCCe-eeeeeccccCCEEEEEECC-----CCCEEEEEeCCCcEEEEcCCCCceEEE-EecCCCCEEEEE
Q 022910 84 GGDDKGFFWRINQGD-WASEIQGHKDSVSSLAFSM-----DGQLLASGGLDGLVQIWDPSSGNLKCT-LEGPGGGVEWVS 156 (290)
Q Consensus 84 ~~dg~i~iw~~~~~~-~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~i~ 156 (290)
+....+-+|++-+.. .+..+. ..+.|-| .-.+||.|+..|.+.+|...+.+.... ...+...|+-+.
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred cceeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 344557777765543 111111 3345544 345899999999999999987654332 223332222111
Q ss_pred Ec-CCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe-eeEEEeCCCC
Q 022910 157 WH-PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPY 234 (290)
Q Consensus 157 ~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~ 234 (290)
=. -..--+..++.|.++++.++..+..........-.+.++.++++++++++.+....|..|.+.... .+..+....
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~- 201 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP- 201 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc-
Confidence 11 112356677888888888876554333332222347899999999999999999999999876432 222211111
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE-----EEEccCCCcEEEEEEecCC
Q 022910 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV-----SSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-----~~~~~~~~~v~~i~~s~d~ 290 (290)
....--+..|+.....+|++..||++.|||++..... .+-..|++.|+.+.|+|-|
T Consensus 202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCC
Confidence 3344567789998899999999999999999875432 2233588999999999754
No 291
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=5e-10 Score=86.97 Aligned_cols=211 Identities=13% Similarity=0.256 Sum_probs=142.7
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCe-----eeeeecccc------------CCEEEEEECCCCC--EEEE
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-----WASEIQGHK------------DSVSSLAFSMDGQ--LLAS 124 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~------------~~i~~~~~~~~~~--~l~~ 124 (290)
...|+++.|.. .+.++++|...|.|.+|.-.... ....+++|. ..|..+.|..++. .++.
T Consensus 26 ad~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45789999998 77899999999999999866532 222344442 3578888875443 6777
Q ss_pred EeCCCcEEEEcCCCCc-------------------e------------------E-----EEE-ecCCCCEEEEEEcCCC
Q 022910 125 GGLDGLVQIWDPSSGN-------------------L------------------K-----CTL-EGPGGGVEWVSWHPRG 161 (290)
Q Consensus 125 ~~~dg~i~i~d~~~~~-------------------~------------------~-----~~~-~~~~~~i~~i~~~~~~ 161 (290)
.+.|.+|++|.+.... + + +.+ ..|...|.++.|..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999764220 0 0 011 3455668888898887
Q ss_pred CEEEEeeCCCeEEEEECCccc---EEEeeecCC-----CCeEEEEEcCC-CCEEEEEeCCCeEEEEcCCCCee------e
Q 022910 162 HIVLAGSEDSTVWMWNADRAA---YLNMFSGHG-----SSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGEN------I 226 (290)
Q Consensus 162 ~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~------~ 226 (290)
..++++. +-.|.+|++.... .+.-+++|. ..|++..|+|. .+.+.-++..|.|++-|++.... +
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 7777664 5789999986532 222333333 35788899994 45666777899999999984321 1
Q ss_pred EEE--eC-----CCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-cEEEEEccC
Q 022910 227 HVI--RG-----HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSH 277 (290)
Q Consensus 227 ~~~--~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~ 277 (290)
... .+ .....+.|..+.|+++|+++++-.. -+|++||++.. .++.++.-|
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 111 10 0112356888999999999987654 48999999864 467777554
No 292
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.19 E-value=1.8e-08 Score=83.21 Aligned_cols=196 Identities=13% Similarity=0.098 Sum_probs=136.5
Q ss_pred cCEEEEEECCC-CCcEEEE-----ecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe-----------C
Q 022910 65 DEVYSVACSPT-DATLVAT-----GGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-----------L 127 (290)
Q Consensus 65 ~~v~~~~~~~~-~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----------~ 127 (290)
..|...+|+|. +...||. .+..+.+++|.+..+..+....-....-..+.|.+.|++|++-- .
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 56788889984 2233443 46678999999987766655443333445688999998766531 1
Q ss_pred CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEee--CCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCE
Q 022910 128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT 205 (290)
Q Consensus 128 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 205 (290)
...++|+++....+. ......++|...+|.|.++.+++.+ ....+.++|++.. ....+ ....=..+.|+|.+++
T Consensus 254 esnLyl~~~~e~~i~-V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~ 329 (561)
T COG5354 254 ESNLYLLRITERSIP-VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERY 329 (561)
T ss_pred cceEEEEeecccccc-eeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccE
Confidence 256888888744433 3335678999999999988766654 6788999999877 22222 3344466789999999
Q ss_pred EEEEeC---CCeEEEEcCCCCeeeE-EEeCCCCcccCeEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCc
Q 022910 206 ICTGSD---DATLRVWNPKSGENIH-VIRGHPYHTEGLTCLTISADSTLALSGSK------DGSVHMVNITTGK 269 (290)
Q Consensus 206 l~~~~~---dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~ 269 (290)
++.++- .|.|-+||........ .+.+ ...+-+.|+|+++++.+... |..|.+||+...+
T Consensus 330 il~agF~nl~gni~i~~~~~rf~~~~~~~~-----~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 330 ILFAGFDNLQGNIEIFDPAGRFKVAGAFNG-----LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred EEEecCCccccceEEeccCCceEEEEEeec-----CCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 988664 4789999987655433 4433 34455689999999988754 7789999986543
No 293
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.18 E-value=1.9e-08 Score=79.36 Aligned_cols=187 Identities=18% Similarity=0.214 Sum_probs=123.4
Q ss_pred cEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE-ecCC---CCEE
Q 022910 78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL-EGPG---GGVE 153 (290)
Q Consensus 78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~---~~i~ 153 (290)
..+++++.++.|..||..+++.+..+.. ...+.... ...+..+++++.++.|+.+|..+++.+... .... ....
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 114 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRS 114 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB-
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccccc
Confidence 3455667899999999999998877764 22211111 224556777778889999999999998874 3221 1122
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCC----------eEEEEEcCCCCEEEEEeCCCeEEEEcCCCC
Q 022910 154 WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS----------VTCGDFTPDGKTICTGSDDATLRVWNPKSG 223 (290)
Q Consensus 154 ~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 223 (290)
.......+..++++..++.|..+|+++++.+......... +..-....++ .+++++.++.+..+|+.++
T Consensus 115 ~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg 193 (238)
T PF13360_consen 115 SSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG 193 (238)
T ss_dssp -SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT
T ss_pred ccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC
Confidence 2233334788899988999999999999988777653322 1122222344 7777777885444499999
Q ss_pred eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 022910 224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS 273 (290)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 273 (290)
+.+.... . ..+.. .....+..|++++.++.|.+||+++|+.+.+
T Consensus 194 ~~~w~~~-~----~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 194 EKLWSKP-I----SGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEEEC-S----S-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CEEEEec-C----CCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 8664222 1 11222 1345677888888999999999999998754
No 294
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=1.2e-08 Score=87.83 Aligned_cols=210 Identities=15% Similarity=0.264 Sum_probs=139.5
Q ss_pred CCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec--cccCCEEEEEECCCCCEEEEEeCC
Q 022910 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLD 128 (290)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d 128 (290)
......-+++.||++.|.-+.|+. ..+.|-|+..+|.|.+|-+-++.....+. ...+.|.+++|+.+|..|+....|
T Consensus 58 ~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeD 136 (1189)
T KOG2041|consen 58 ASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYED 136 (1189)
T ss_pred ccccchhhhhccCcceEEEEEecc-ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEcc
Confidence 344556688999999999999998 55677788999999999998887655443 355679999999999999998888
Q ss_pred CcEEEEcCCCCceE-EEEec---------------------------------------------------CCCCEEEEE
Q 022910 129 GLVQIWDPSSGNLK-CTLEG---------------------------------------------------PGGGVEWVS 156 (290)
Q Consensus 129 g~i~i~d~~~~~~~-~~~~~---------------------------------------------------~~~~i~~i~ 156 (290)
|.|.+=.+..++.- ..+++ ....|..+.
T Consensus 137 GavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~ 216 (1189)
T KOG2041|consen 137 GAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIE 216 (1189)
T ss_pred CCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcccccee
Confidence 88876554432211 00110 111233334
Q ss_pred Ec--------CCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC---------eEEEEc
Q 022910 157 WH--------PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA---------TLRVWN 219 (290)
Q Consensus 157 ~~--------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------~i~i~d 219 (290)
|. |+...|+++..+|.+.+..-.+......+. .+..+..+.|+++|..|++++.+. .|.+|.
T Consensus 217 w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys 295 (1189)
T KOG2041|consen 217 WNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS 295 (1189)
T ss_pred eccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec
Confidence 32 244566666666666554433222111222 236688899999999999987643 466665
Q ss_pred CCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 267 (290)
. -|..+.+++. ....|++++|-..|-.++.+ -|+.|++=+++.
T Consensus 296 p-~G~i~gtlkv---pg~~It~lsWEg~gLriA~A-vdsfiyfanIRP 338 (1189)
T KOG2041|consen 296 P-YGHIVGTLKV---PGSCITGLSWEGTGLRIAIA-VDSFIYFANIRP 338 (1189)
T ss_pred c-chhheEEEec---CCceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence 4 3566667765 67789999998766666554 466777666653
No 295
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.14 E-value=1.3e-08 Score=84.09 Aligned_cols=219 Identities=14% Similarity=0.101 Sum_probs=151.6
Q ss_pred CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC-------------
Q 022910 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG------------- 129 (290)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------- 129 (290)
-.-++..++|+| .+.+|++... ..|.+|.......+..+. | ..|..+.|+|.++||.+-+..+
T Consensus 31 ~~~p~~~~~~SP-~G~~l~~~~~-~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 31 ENWPVAYVSESP-LGTYLFSEHA-AGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cCcchhheeecC-cchheehhhc-cceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 456888999999 7777776654 458899988877666665 4 3589999999999999976543
Q ss_pred --cEEEEcCCCCceEEEEecCCCC--EE-EEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec-CCCCeEEEEEcCCC
Q 022910 130 --LVQIWDPSSGNLKCTLEGPGGG--VE-WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-HGSSVTCGDFTPDG 203 (290)
Q Consensus 130 --~i~i~d~~~~~~~~~~~~~~~~--i~-~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~ 203 (290)
.+.+||+.++.++..+.....+ .+ -+.|+.+.+++|-. -...++|+++...-....+.. ....|....|+|.+
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCCC
Confidence 4999999999999988876655 44 67888888776655 335799999722211111111 13568888899953
Q ss_pred --CEEEE-----EeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe-----------CCCcEEEEEc
Q 022910 204 --KTICT-----GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-----------KDGSVHMVNI 265 (290)
Q Consensus 204 --~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~dg~i~~wd~ 265 (290)
..|+. ....+.+++|.+..+..+.+..- ....-..+.|.+.|.+|++-- ....++++++
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l---fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~ 262 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL---FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRI 262 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCCeeeeeee---EeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEee
Confidence 34443 45788999999986665544332 333445788999888776421 1356888888
Q ss_pred CCCcEEEEEccCCCcEEEEEEecCC
Q 022910 266 TTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 266 ~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
+.. -+.....-.++|..++|.|.+
T Consensus 263 ~e~-~i~V~~~~~~pVhdf~W~p~S 286 (561)
T COG5354 263 TER-SIPVEKDLKDPVHDFTWEPLS 286 (561)
T ss_pred ccc-ccceeccccccceeeeecccC
Confidence 733 333333557899999998863
No 296
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.14 E-value=2e-08 Score=92.93 Aligned_cols=198 Identities=16% Similarity=0.306 Sum_probs=129.3
Q ss_pred CCcCEEEEEECCCCCcEEEEecCCCcEEEEEcc---------------C--------Ceeeeeecc--------------
Q 022910 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRIN---------------Q--------GDWASEIQG-------------- 105 (290)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~---------------~--------~~~~~~~~~-------------- 105 (290)
-...|.|++|+| ++.+|+..+.++++.+.... . |+....+.|
T Consensus 119 vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 119 VDSGILAASWSP-DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EcCcEEEEEECC-CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 356899999999 77888888888888776431 0 000000100
Q ss_pred ----------ccCCEEEEEECCCCCEEEEEeC---C---CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC
Q 022910 106 ----------HKDSVSSLAFSMDGQLLASGGL---D---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE 169 (290)
Q Consensus 106 ----------~~~~i~~~~~~~~~~~l~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 169 (290)
+...-..++|..||.++|+.+. . ..|+||+-+ |.+..+...-.+--.+++|.|.|++||+.-.
T Consensus 198 ~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~ 276 (928)
T PF04762_consen 198 VPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR 276 (928)
T ss_pred CCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE
Confidence 2224467899999999999875 2 579999965 6655555444444567999999999998765
Q ss_pred ---CCeEEEEECC---cccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe--eeEEEeCCCCcccCeEE
Q 022910 170 ---DSTVWMWNAD---RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE--NIHVIRGHPYHTEGLTC 241 (290)
Q Consensus 170 ---dg~i~i~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~ 241 (290)
...|.+|.-. .++....+......|..|.|++++..|++...+. |.+|-..+.. ..+.+.-. ....+..
T Consensus 277 ~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~--~~~~~~~ 353 (928)
T PF04762_consen 277 LPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS--SSESVNF 353 (928)
T ss_pred cCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc--CCCCCCc
Confidence 3346666522 2222222233466899999999999999987665 9999887653 12222211 2334555
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEEc
Q 022910 242 LTISA-DSTLALSGSKDGSVHMVNI 265 (290)
Q Consensus 242 ~~~~~-~~~~l~~~~~dg~i~~wd~ 265 (290)
+.|+| +...|...+.+|.+..++.
T Consensus 354 ~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 354 VKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred eEECCCCCCEEEEEecCCcEEEEEE
Confidence 99999 4556777776676655543
No 297
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.13 E-value=4.4e-08 Score=82.88 Aligned_cols=191 Identities=16% Similarity=0.113 Sum_probs=124.7
Q ss_pred EEEEecCCCcEEEEEccCCeeeeeeccccCCEE-----EEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCC--C-
Q 022910 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVS-----SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG--G- 150 (290)
Q Consensus 79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~- 150 (290)
.++.++.+|.+..||..+++.+..+......+. +... .+..++.+..+|.+..+|+.+++.+....... +
T Consensus 147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~ 224 (377)
T TIGR03300 147 LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR 224 (377)
T ss_pred EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence 455566788899999888887766653222111 1111 13467788888999999999998765443110 0
Q ss_pred -C---EEEEEEcC--CCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe
Q 022910 151 -G---VEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224 (290)
Q Consensus 151 -~---i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 224 (290)
. ...+.-+| .+..+++++.+|.++.||..+++.+..... .. ...... .+..+++++.+|.|+.+|..+++
T Consensus 225 ~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 225 TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPAV--DDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred CchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCceE--eCCEEEEECCCCeEEEEECCCCc
Confidence 0 00111111 355788888899999999999987765542 11 122222 46678888899999999999998
Q ss_pred eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCC
Q 022910 225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD 279 (290)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 279 (290)
.+...... ......+... .+..|++++.+|.|+++|..+++.+.+++.+..
T Consensus 301 ~~W~~~~~--~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 301 ELWKNDEL--KYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred EEEccccc--cCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 76554321 1111222222 366888999999999999999999998886554
No 298
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.3e-08 Score=84.92 Aligned_cols=215 Identities=14% Similarity=0.123 Sum_probs=147.0
Q ss_pred EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC-----------CCcEEEEc
Q 022910 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-----------DGLVQIWD 135 (290)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d 135 (290)
=+-+.||| .|.+|+|--..| |.+|--.+-..+.++. |.+ |.-+.|||+.+||++-+. ...++|||
T Consensus 213 etyv~wSP-~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 213 ETYVRWSP-KGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeEEecC-CceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 35688999 778888876544 7799766666666665 654 788999999999999653 25799999
Q ss_pred CCCCceEEEEecCCC---CEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC-
Q 022910 136 PSSGNLKCTLEGPGG---GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD- 211 (290)
Q Consensus 136 ~~~~~~~~~~~~~~~---~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 211 (290)
+.+|.....+....+ .-.-+.||.+++++|.-.. ..|.||+..+..++-.-...-..|....|+|.+++||--..
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 999998888775322 2234689999999998777 56999998776555444444567889999999888875432
Q ss_pred ----CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCcE-EEEEcc
Q 022910 212 ----DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS----------KDGSVHMVNITTGKV-VSSLVS 276 (290)
Q Consensus 212 ----dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~~wd~~~~~~-~~~~~~ 276 (290)
-..+.+..+.+.+.+++... +.-.=..+.|-.+|.+|+.-- .-..+-|+.++.... +..+ .
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nl---fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-e 443 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNL---FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-E 443 (698)
T ss_pred ccCCcceEEEEecCccceeeeccc---eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-e
Confidence 23566677766666555443 333445677777888887532 112345555554332 2222 2
Q ss_pred CCCcEEEEEEecCC
Q 022910 277 HTDSIECIGFSRSE 290 (290)
Q Consensus 277 ~~~~v~~i~~s~d~ 290 (290)
-...|...+|-|.|
T Consensus 444 lke~vi~FaWEP~g 457 (698)
T KOG2314|consen 444 LKESVIAFAWEPHG 457 (698)
T ss_pred cchheeeeeeccCC
Confidence 35677888887765
No 299
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.13 E-value=3.4e-08 Score=83.59 Aligned_cols=191 Identities=15% Similarity=0.106 Sum_probs=121.0
Q ss_pred cEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEE-EE
Q 022910 78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEW-VS 156 (290)
Q Consensus 78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~-i~ 156 (290)
..+++++.+|.|..+|..+++.+............+.. ++..+++++.+|.|+.+|..+|+.+........ +.+ ..
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~p~ 142 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-VLSPPL 142 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-eecCCE
Confidence 35667778899999999999988766533322222222 567788888999999999999998776654332 221 11
Q ss_pred EcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeE-----EEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeC
Q 022910 157 WHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVT-----CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231 (290)
Q Consensus 157 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 231 (290)
. .+..++.++.+|.|+.||.++++.+..+......+. +... .+..++++..+|.+..+|+++++.+.....
T Consensus 143 v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 143 V--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred E--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 1 345777788899999999999987766653322111 1111 234678888899999999999987654332
Q ss_pred CCCcc-cC---eEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910 232 HPYHT-EG---LTCLTISA--DSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (290)
Q Consensus 232 ~~~~~-~~---v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 275 (290)
..... .. ...+.-+| .+..+++++.+|.++.||..+|+.+....
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~ 268 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD 268 (377)
T ss_pred ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec
Confidence 10000 00 00011111 24466666777778888877777665543
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.13 E-value=3.1e-07 Score=72.92 Aligned_cols=181 Identities=17% Similarity=0.190 Sum_probs=120.5
Q ss_pred EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc-----ccCCEEEEEECCCCCEEEEEeCC--------CcEEE
Q 022910 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-----HKDSVSSLAFSMDGQLLASGGLD--------GLVQI 133 (290)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i 133 (290)
...+++...++.++++. . +.+.++|..+++....... .....+.+++.|+|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l~v~~-~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVAD-S-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEEE-T-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEEE-c-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 56677773266666554 3 4556669888765443332 34567899999999977776543 55777
Q ss_pred EcCCCCceEEEEecCCCCEEEEEEcCCCCEEE-EeeCCCeEEEEECCccc-------EEEeeecCCCCeEEEEEcCCCCE
Q 022910 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL-AGSEDSTVWMWNADRAA-------YLNMFSGHGSSVTCGDFTPDGKT 205 (290)
Q Consensus 134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~ 205 (290)
++.. ++...... .-...+.|+|+|+++.|+ +-+..+.|..|++.... ....+....+..-.+++..+|++
T Consensus 120 ~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 120 IDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL 197 (246)
T ss_dssp EETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred ECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence 7776 55443333 344578999999998766 55667889999986322 11222222234789999999998
Q ss_pred EEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEc-CCCCEEEEEe
Q 022910 206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS-ADSTLALSGS 255 (290)
Q Consensus 206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 255 (290)
.++....+.|.+++.. ++.+..+.. ....+++++|. ++.+.|+..+
T Consensus 198 ~va~~~~~~I~~~~p~-G~~~~~i~~---p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 198 WVADWGGGRIVVFDPD-GKLLREIEL---PVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEETTTEEEEEETT-SCEEEEEE----SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEEEcCCCEEEEECCC-ccEEEEEcC---CCCCEEEEEEECCCCCEEEEEe
Confidence 8888889999999987 888887775 23479999994 6666555543
No 301
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=1.3e-08 Score=88.18 Aligned_cols=221 Identities=15% Similarity=0.200 Sum_probs=160.3
Q ss_pred CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCC------------CEEEEEeCCCcEEE
Q 022910 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG------------QLLASGGLDGLVQI 133 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~l~~~~~dg~i~i 133 (290)
.-.++.|+| +| +||-|+. ..|.+-|..+.+.+..+.-|...|+.+.|.|-. -.||++...|.|.+
T Consensus 17 N~~A~Dw~~-~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 17 NRNAADWSP-SG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred cccccccCc-cc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 356788998 54 6666663 578899999999999999999999999998721 15777788899999
Q ss_pred EcCCCCceEEEEecCCCCEEEEEEcC---CC-CEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC-CCCEEEE
Q 022910 134 WDPSSGNLKCTLEGPGGGVEWVSWHP---RG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICT 208 (290)
Q Consensus 134 ~d~~~~~~~~~~~~~~~~i~~i~~~~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 208 (290)
||...+..+..+..+..++..++|-+ +. ..|++-.....|.+|+..+|+.+.++........|+.+.| +.+.+..
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 99999998888998999999999976 33 4666666678999999999999988887778888999999 6677777
Q ss_pred EeCCCeEEEEcCCC-------CeeeEEEeCCCC-------------cccC---------eEEEEEcCCCCEEEEEeCCCc
Q 022910 209 GSDDATLRVWNPKS-------GENIHVIRGHPY-------------HTEG---------LTCLTISADSTLALSGSKDGS 259 (290)
Q Consensus 209 ~~~dg~i~i~d~~~-------~~~~~~~~~~~~-------------~~~~---------v~~~~~~~~~~~l~~~~~dg~ 259 (290)
-+..|.|.+-+.-. ++..+.-..+.. +... .-.++|+|.-+.++-......
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 77777777765431 222222111100 0000 123567885544444556778
Q ss_pred EEEEEcCCCcEEEEEccCCCcEEEEEEecC
Q 022910 260 VHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 260 i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d 289 (290)
+.++|++-..++.......+.+.-+.|-|+
T Consensus 254 llv~dle~~~~l~vvpier~~akfv~vlP~ 283 (1062)
T KOG1912|consen 254 LLVFDLEYECCLAVVPIERGGAKFVDVLPD 283 (1062)
T ss_pred eEEEcchhhceeEEEEeccCCcceeEeccC
Confidence 999999888887777665665555555554
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=6e-10 Score=90.47 Aligned_cols=211 Identities=18% Similarity=0.169 Sum_probs=153.3
Q ss_pred cCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC---CeeeeeeccccCCEEEEEECCCCCEEEEEeC-CCcEEEEcCC
Q 022910 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ---GDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DGLVQIWDPS 137 (290)
Q Consensus 62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~ 137 (290)
-|.+.|+.+... -..++.+++.||.++.|.-.. -+.+..+..|-..|.+++.+-++.++.+.+. |..++++|+.
T Consensus 7 mhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 478888887655 457888999999999997554 2344456678889999999999999999777 9999999998
Q ss_pred CCceEEEEecCC--CCEEEEEEcCCC--CEEEE-eeCCCeEEEEECCccc--EEEeeecCCCCeEEEEEcCCCCEEEEEe
Q 022910 138 SGNLKCTLEGPG--GGVEWVSWHPRG--HIVLA-GSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTPDGKTICTGS 210 (290)
Q Consensus 138 ~~~~~~~~~~~~--~~i~~i~~~~~~--~~l~~-~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 210 (290)
+...+..++... +.+. ...++.. ..+++ .-.+|.+.++|-.... ....-.-|..+|.++.+.|.+..+++..
T Consensus 85 n~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred ccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 776554443222 2122 2222211 13333 3457889999976543 3334445899999999999999999999
Q ss_pred CCCeEEEEcCCC-Ceee-----EE------EeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910 211 DDATLRVWNPKS-GENI-----HV------IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (290)
Q Consensus 211 ~dg~i~i~d~~~-~~~~-----~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 275 (290)
..|.|.-|.... .+.. .. +.+........+++.|+|++..+.+-+.|..|+++.+++|++++.+.
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 999999998762 1111 11 11122245678899999999999999999999999999999887664
No 303
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.3e-08 Score=84.91 Aligned_cols=182 Identities=13% Similarity=0.189 Sum_probs=128.0
Q ss_pred EEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEee
Q 022910 89 GFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168 (290)
Q Consensus 89 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 168 (290)
...|+.........-....-.-+-+.|||.|.||++--.-| |.+|--.+...++.+. |.+ +.-+.|||..+||++=+
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s 268 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYS 268 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEec
Confidence 44555443322222222223446789999999999988766 8999877777777775 554 99999999999999854
Q ss_pred C-----------CCeEEEEECCcccEEEeeecCCC--C-eEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC
Q 022910 169 E-----------DSTVWMWNADRAAYLNMFSGHGS--S-VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY 234 (290)
Q Consensus 169 ~-----------dg~i~i~d~~~~~~~~~~~~~~~--~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 234 (290)
. ...++|||+++|...+.+..... . -.-+.||.+++++|.-.. ..|.||+..+..+ +.....
T Consensus 269 ~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l---ld~Ksl 344 (698)
T KOG2314|consen 269 PEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFML---LDKKSL 344 (698)
T ss_pred CCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceee---eccccc
Confidence 2 25799999999998887765222 2 234689999999987666 4689999876433 333333
Q ss_pred cccCeEEEEEcCCCCEEEEEeC-----CCcEEEEEcCCCcEEEEEccC
Q 022910 235 HTEGLTCLTISADSTLALSGSK-----DGSVHMVNITTGKVVSSLVSH 277 (290)
Q Consensus 235 ~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~~~~~~~~~~~ 277 (290)
...+|....|+|.+++||--+- -.++.+..+.+++.+++-..|
T Consensus 345 ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlf 392 (698)
T KOG2314|consen 345 KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLF 392 (698)
T ss_pred CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccce
Confidence 5678999999999888876433 235777777777777665443
No 304
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4e-09 Score=85.80 Aligned_cols=220 Identities=20% Similarity=0.176 Sum_probs=156.4
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecC-CCcEEEEEccCCeeeeeeccccCCEEEEEEC-CCCC---EEEEE-eC
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGG-DDKGFFWRINQGDWASEIQGHKDSVSSLAFS-MDGQ---LLASG-GL 127 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~-~~~~---~l~~~-~~ 127 (290)
.+.+..++.|-+.|.+++.+- ++.+++|.+. |..++++|+.+-..+..++-..-+ ..+.|. ..|. .|+++ -.
T Consensus 43 vEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~ 120 (558)
T KOG0882|consen 43 VEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFK 120 (558)
T ss_pred eeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeeccchhhhcccccCC-CceEEecCCCCeeeeEEeeccc
Confidence 345677788999999999887 8889989777 999999999876554333311111 112222 2221 34433 34
Q ss_pred CCcEEEEcCCCCc--eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCc-cc-----E---------EEeeecC
Q 022910 128 DGLVQIWDPSSGN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-AA-----Y---------LNMFSGH 190 (290)
Q Consensus 128 dg~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~-----~---------~~~~~~~ 190 (290)
+|.+.|+|-.... ....-.-|..+|.++.+.+-+..+++....|.|..|.... .+ . +..+...
T Consensus 121 sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~ 200 (558)
T KOG0882|consen 121 SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKA 200 (558)
T ss_pred CCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccccc
Confidence 7899999976543 2333345889999999999999999999999999999873 11 1 1112224
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC-----------------------------Cc-ccCeE
Q 022910 191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP-----------------------------YH-TEGLT 240 (290)
Q Consensus 191 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------------------------~~-~~~v~ 240 (290)
.....++.|+|++..+.+-+.|..|++++.++++.++.+.... .+ ...-+
T Consensus 201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~ 280 (558)
T KOG0882|consen 201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGT 280 (558)
T ss_pred ccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccc
Confidence 5667899999999999999999999999999987665442110 01 12345
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910 241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS 276 (290)
Q Consensus 241 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 276 (290)
.+.|...+++|+-|+-=| |++.++.++.+++.+-.
T Consensus 281 ~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 281 NAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGK 315 (558)
T ss_pred eeEEcCCCCEEEeeccee-EEEEEeecCeEEEEecc
Confidence 678888999999998765 89999999988877643
No 305
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=8.5e-10 Score=86.78 Aligned_cols=162 Identities=15% Similarity=0.187 Sum_probs=119.7
Q ss_pred EEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCC-----ceEEEEecCCCCEEEE
Q 022910 81 ATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-----NLKCTLEGPGGGVEWV 155 (290)
Q Consensus 81 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~i~~i 155 (290)
++.+.+-.|-+-++.++-.. .+. ..+.|.++.|...++.+..|+..|.|..+|++.. .+.+.+ .|.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence 34445667778888776422 233 5667889999988999999999999999999865 333444 378889998
Q ss_pred EEcC-CCCEEEEeeCCCeEEEEECCcccE---EEeeecCCCCeEE--EEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEE
Q 022910 156 SWHP-RGHIVLAGSEDSTVWMWNADRAAY---LNMFSGHGSSVTC--GDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229 (290)
Q Consensus 156 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 229 (290)
..-. ++.+|++.+.+|.|++||++.-++ +.++.+|...-.- +-+.+....+++++.|...|||.++.+..+.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 8766 678999999999999999998777 7888887553332 234556678889999999999999999988777
Q ss_pred eCCCC-cccCeEEEEEc
Q 022910 230 RGHPY-HTEGLTCLTIS 245 (290)
Q Consensus 230 ~~~~~-~~~~v~~~~~~ 245 (290)
+.... ....+.+++|.
T Consensus 385 pf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 385 PFPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCCccccccccceehh
Confidence 64321 12234555554
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.05 E-value=8.3e-08 Score=87.10 Aligned_cols=201 Identities=12% Similarity=0.145 Sum_probs=134.1
Q ss_pred cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCC----C--
Q 022910 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS----S-- 138 (290)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~----~-- 138 (290)
+.|.++.|.. ++..++.+...|.|.+-|..+..... ...-...|.+++|+|+.+.++..+..++|.+..-. .
T Consensus 69 ~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 69 DEIVSVQFLA-DTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred cceEEEEEec-ccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 6899999998 66777778888999999887754332 33356789999999999999999888888775421 0
Q ss_pred -----------------CceEEEEecCC---------------------CCEEEEEEcCCCCEEEEe-----eCCCeEEE
Q 022910 139 -----------------GNLKCTLEGPG---------------------GGVEWVSWHPRGHIVLAG-----SEDSTVWM 175 (290)
Q Consensus 139 -----------------~~~~~~~~~~~---------------------~~i~~i~~~~~~~~l~~~-----~~dg~i~i 175 (290)
|+....|.+.. ..=+.|.|--+|.++|+. .....|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 11111222111 112358899999999983 23378999
Q ss_pred EECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE---eCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEE
Q 022910 176 WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG---SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (290)
Q Consensus 176 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 252 (290)
||-+ +..-..-....+.-.+++|-|.|..+++- ..++.|.+|..+....-......+.....+..++|+.++..|+
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILA 305 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCcee
Confidence 9977 43322222233344688999999988874 3466799998653332111111222334499999999999998
Q ss_pred E---EeCCCcEEEEEcCCC
Q 022910 253 S---GSKDGSVHMVNITTG 268 (290)
Q Consensus 253 ~---~~~dg~i~~wd~~~~ 268 (290)
+ ......|++|-+.+.
T Consensus 306 v~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeecccccceEEEEEecCe
Confidence 8 444455999988764
No 307
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=6.9e-08 Score=84.67 Aligned_cols=206 Identities=14% Similarity=0.152 Sum_probs=135.5
Q ss_pred CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCC-EEEEEECCCCCEEEEEeCCC-----cEEEEcCCCC
Q 022910 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDS-VSSLAFSMDGQLLASGGLDG-----LVQIWDPSSG 139 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~ 139 (290)
.|.| |++ ++..++.|+.+|.|.+++- ..+.+..++.+... |..+....+..+|++.+.|+ .|+||+++.-
T Consensus 27 ~isc--~~s-~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISC--CSS-STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeE--EcC-CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 4544 455 6678899999999877763 23444677777776 44444444446788777654 4899998643
Q ss_pred ------ceE---EEEe--c--CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECC---c-ccEEEeeecCCCCeEEEEEcCC
Q 022910 140 ------NLK---CTLE--G--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD---R-AAYLNMFSGHGSSVTCGDFTPD 202 (290)
Q Consensus 140 ------~~~---~~~~--~--~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~---~-~~~~~~~~~~~~~i~~~~~~~~ 202 (290)
.++ ..+. . ...++.+++.+.+-+.+|+|-.+|.|..+.-. . +....-......+|+.+++..+
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 222 1111 1 24678999999999999999999999998532 1 1222222335679999999888
Q ss_pred CCEEEEEeCCCeEEEEcCCCCee-eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc-cCCC
Q 022910 203 GKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-SHTD 279 (290)
Q Consensus 203 ~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~ 279 (290)
+..++-......|.+|.+....+ ...+. .+...++|..+++....+++++ ...+.+|+....++-..+. +|..
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld---~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLD---NNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeec---cCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeE
Confidence 87633333345799999874332 22233 3778899999987555455554 3479999987766666666 5544
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=2.3e-10 Score=100.12 Aligned_cols=181 Identities=18% Similarity=0.219 Sum_probs=132.9
Q ss_pred eeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCC--eEEEEE
Q 022910 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS--TVWMWN 177 (290)
Q Consensus 100 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg--~i~i~d 177 (290)
...+..|....+|++|+-..++|++|+..|.|++|++.+|.......+|.++|+.+.-+.+|..+++.+... -..+|+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 445667888999999999999999999999999999999999999999999999999999999877766544 477898
Q ss_pred CCc-ccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEe-CCCCcccCeEEEEEcCCCCEEEEEe
Q 022910 178 ADR-AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR-GHPYHTEGLTCLTISADSTLALSGS 255 (290)
Q Consensus 178 ~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~ 255 (290)
+.. +.....+. .-.++.|+.....-+.|+......+||+.++.++.++. ......-.-++..|+|+..+++
T Consensus 1174 ~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--- 1246 (1516)
T ss_pred cccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---
Confidence 764 33344443 23567787755445566666678999999998876632 2221222346788999888776
Q ss_pred CCCcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 256 KDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 256 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
.|| .+||++..+.++.|...+..+.+ .|+|+|
T Consensus 1247 ndG--vLWDvR~~~aIh~FD~ft~~~~G-~FHP~g 1278 (1516)
T KOG1832|consen 1247 NDG--VLWDVRIPEAIHRFDQFTDYGGG-GFHPSG 1278 (1516)
T ss_pred eCc--eeeeeccHHHHhhhhhheecccc-cccCCC
Confidence 466 47999988888777654422222 355554
No 309
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=99.00 E-value=1.3e-07 Score=84.60 Aligned_cols=134 Identities=14% Similarity=0.215 Sum_probs=94.9
Q ss_pred eCCCcEEEEcCCCCceEEEEecCCCC-EEEEEEcC-----CCCEEEEeeCCCeEEEEECCccc--EEEe-e--ecCCCCe
Q 022910 126 GLDGLVQIWDPSSGNLKCTLEGPGGG-VEWVSWHP-----RGHIVLAGSEDSTVWMWNADRAA--YLNM-F--SGHGSSV 194 (290)
Q Consensus 126 ~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~-----~~~~l~~~~~dg~i~i~d~~~~~--~~~~-~--~~~~~~i 194 (290)
.....|+-.|++.|+.+..+..+... |..++-.. ....-++|-.+..+..||.|-.. ++.. . -......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34678999999999999999987653 44443221 13456778888899999998642 2211 1 1234567
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEcCCCCeee-EEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910 195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENI-HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (290)
Q Consensus 195 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~ 265 (290)
+|++-+.+| +||+|+.+|.||+||. .+... ..+.+ ...+|.+|..+.||++|++.+. ..|.++++
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~---lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPG---LGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCC---CCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 788777665 7999999999999995 33332 22333 6789999999999999987764 57777775
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.00 E-value=1.9e-07 Score=73.71 Aligned_cols=185 Identities=17% Similarity=0.173 Sum_probs=120.8
Q ss_pred CCcEEEEEccCCeeeeeeccc--cCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCE
Q 022910 86 DDKGFFWRINQGDWASEIQGH--KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163 (290)
Q Consensus 86 dg~i~iw~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 163 (290)
+|+|..||..+++.+...... .....+. ..+.+.++++++.++.|+.||..+|+.+..+..... +.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eecccc
Confidence 688999999999988877531 1222211 233567788888999999999999998877775322 11111 224556
Q ss_pred EEEeeCCCeEEEEECCcccEEEee-ecCC---CCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcc-c-
Q 022910 164 VLAGSEDSTVWMWNADRAAYLNMF-SGHG---SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT-E- 237 (290)
Q Consensus 164 l~~~~~dg~i~i~d~~~~~~~~~~-~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~- 237 (290)
+++++.++.|+.+|..+++.+... .... .....+.....+..++++..++.|..+|+++|+.+.......... .
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778889999999999988774 3221 111222222247888999889999999999999988876532111 1
Q ss_pred -----CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE
Q 022910 238 -----GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL 274 (290)
Q Consensus 238 -----~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 274 (290)
.+..-....++ .++.++.++.+..+|+.+++.+...
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~ 199 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSK 199 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEE
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEe
Confidence 11222222344 7777777886444499999866533
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.95 E-value=1e-06 Score=70.08 Aligned_cols=194 Identities=17% Similarity=0.195 Sum_probs=132.0
Q ss_pred CceeeeccCCcCEEEEEECCCCCcEEEEe-----cCCCcEEEEEcc-CCeeeeeeccccCCEEEEEECCCCCEEEEEe--
Q 022910 55 DSTHIFSGHSDEVYSVACSPTDATLVATG-----GGDDKGFFWRIN-QGDWASEIQGHKDSVSSLAFSMDGQLLASGG-- 126 (290)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~-----~~dg~i~iw~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-- 126 (290)
.+-+.|.|| -.|++ ++.+|++. ...|.|-|||.. +.+.+..+..|.-.-..+.+.|+++.|+++-
T Consensus 47 ~~gRHFyGH------g~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 47 PPGRHFYGH------GVFSP-DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG 119 (305)
T ss_pred CCCCEEecC------EEEcC-CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC
Confidence 444555555 36888 56666654 446899999999 6677778887777778899999998777763
Q ss_pred ----------------CCCcEEEEcCCCCceEEEEec----CCCCEEEEEEcCCCCEEEEeeCCC-------eEEEEECC
Q 022910 127 ----------------LDGLVQIWDPSSGNLKCTLEG----PGGGVEWVSWHPRGHIVLAGSEDS-------TVWMWNAD 179 (290)
Q Consensus 127 ----------------~dg~i~i~d~~~~~~~~~~~~----~~~~i~~i~~~~~~~~l~~~~~dg-------~i~i~d~~ 179 (290)
.+.+|.+.|..+|+++..... |...|+.+++.++|..++..-..| -|.++.-.
T Consensus 120 I~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g 199 (305)
T PF07433_consen 120 IETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG 199 (305)
T ss_pred CccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC
Confidence 235577777888888766433 666899999999987666654433 24444332
Q ss_pred cccEEEee-------ecCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEE
Q 022910 180 RAAYLNMF-------SGHGSSVTCGDFTPDGKTICTG-SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA 251 (290)
Q Consensus 180 ~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 251 (290)
..+..+ ......+-+|++++++.+++++ -..+.+.+||..++..+..... ..+..++..+++ ++
T Consensus 200 --~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-----~D~cGva~~~~~-f~ 271 (305)
T PF07433_consen 200 --GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-----PDACGVAPTDDG-FL 271 (305)
T ss_pred --CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-----CceeeeeecCCc-eE
Confidence 222222 2345789999999999887654 4577899999999987766543 346677777666 55
Q ss_pred EEEeCCCcEEEEE
Q 022910 252 LSGSKDGSVHMVN 264 (290)
Q Consensus 252 ~~~~~dg~i~~wd 264 (290)
++.+ .|.+....
T Consensus 272 ~ssG-~G~~~~~~ 283 (305)
T PF07433_consen 272 VSSG-QGQLIRLS 283 (305)
T ss_pred EeCC-CccEEEcc
Confidence 5544 45544433
No 312
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=1.4e-07 Score=82.81 Aligned_cols=108 Identities=15% Similarity=0.286 Sum_probs=85.2
Q ss_pred EEEECCCCCcEEEEec----CCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEE
Q 022910 69 SVACSPTDATLVATGG----GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144 (290)
Q Consensus 69 ~~~~~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 144 (290)
-.+|+| ...+||+++ ..|.|.||- .+|++..... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+....
T Consensus 20 i~SWHP-sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 20 ISSWHP-SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred ccccCC-CCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 356999 666777764 357788874 4455433322 122356799999988899999999999999888877777
Q ss_pred EecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECC
Q 022910 145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (290)
Q Consensus 145 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~ 179 (290)
...|..+|..+.|+++|+.++++..-|.+.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 77899999999999999999999999999999875
No 313
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.94 E-value=3.3e-07 Score=77.74 Aligned_cols=228 Identities=19% Similarity=0.267 Sum_probs=140.6
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEec--CC-CcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe-CCC
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGG--GD-DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-LDG 129 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~--~d-g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg 129 (290)
..-.+.+..-...+..-+|+|.+..+....- .. ..+.++++.+++....+. ..+.-...+|+|+|++|+.+. .+|
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence 4444555555667778889995555443321 12 469999999877655554 334445678999999766654 455
Q ss_pred --cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC-CC--eEEEEECCcccEEEeeecCCCCeEEEEEcCCCC
Q 022910 130 --LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK 204 (290)
Q Consensus 130 --~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 204 (290)
.|+++|+..+... .+....+.-..-.|+|+|++++..+. .| .|.+++...... .++......-..-.|+|+|+
T Consensus 261 ~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 261 SPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred CccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCC
Confidence 4666777776633 34444444456789999998887664 33 477777776655 33333333333678999999
Q ss_pred EEEEEeC-CCe--EEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCcEEEEEccCCC
Q 022910 205 TICTGSD-DAT--LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG--SVHMVNITTGKVVSSLVSHTD 279 (290)
Q Consensus 205 ~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~ 279 (290)
+|+..+. +|. |.++|+.++...+.+. .........|.|+++.+...+..+ .+..--..+++....+....+
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt----~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~~~~~ 414 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILT----STYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSRPLPLADG 414 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEcc----ccccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEEEEeccCc
Confidence 9987664 344 7778887766544444 233344557888888766554432 222222234555555655556
Q ss_pred cEEEEEEec
Q 022910 280 SIECIGFSR 288 (290)
Q Consensus 280 ~v~~i~~s~ 288 (290)
.+...+|+|
T Consensus 415 ~~~~p~w~~ 423 (425)
T COG0823 415 DVRVPAWSP 423 (425)
T ss_pred ceecccccC
Confidence 777777765
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.3e-07 Score=76.13 Aligned_cols=227 Identities=12% Similarity=0.081 Sum_probs=135.5
Q ss_pred CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCC-EEEEEeCCCcEEE
Q 022910 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQI 133 (290)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i 133 (290)
++...+.+|...|..++|+|...-++..++.+.+|+|.|+.+...+..+..+ ..+++++|.-+.. +|+.|-..|.|.|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 3355777888999999999966668889999999999999999888888877 7899999987654 7888889999999
Q ss_pred EcCCCCce-EEEEec--CCCCEEEEEEc------CCCCEEEEeeCCCeEEEEECCc--c--cEEEeeecCCCCeEEEEEc
Q 022910 134 WDPSSGNL-KCTLEG--PGGGVEWVSWH------PRGHIVLAGSEDSTVWMWNADR--A--AYLNMFSGHGSSVTCGDFT 200 (290)
Q Consensus 134 ~d~~~~~~-~~~~~~--~~~~i~~i~~~------~~~~~l~~~~~dg~i~i~d~~~--~--~~~~~~~~~~~~i~~~~~~ 200 (290)
||++..+- +..+.+ ...+|..++.- +.+.+|+....+ +..|.+.. . .++..+ ...+...++.+.
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel-e~pG~cismqy~ 339 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL-EPPGICISMQYH 339 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc-CCCcceeeeeec
Confidence 99986532 222222 22344444332 234444444432 44454432 1 122222 234555666776
Q ss_pred CCCCEEEEEeCCC-------eEEE-EcCCCCeeeEEEeC----CCCcccCeEEEEE-cCCCCEEEE-EeCCCcEEEEEcC
Q 022910 201 PDGKTICTGSDDA-------TLRV-WNPKSGENIHVIRG----HPYHTEGLTCLTI-SADSTLALS-GSKDGSVHMVNIT 266 (290)
Q Consensus 201 ~~~~~l~~~~~dg-------~i~i-~d~~~~~~~~~~~~----~~~~~~~v~~~~~-~~~~~~l~~-~~~dg~i~~wd~~ 266 (290)
+..+.++...... .|.+ -|.+.|.++...+. .....-.-+...+ .++.++++. |...+.+.+||..
T Consensus 340 ~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~ 419 (463)
T KOG1645|consen 340 GVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPH 419 (463)
T ss_pred CccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccc
Confidence 6555554443321 1111 12233333222111 1100111111222 234455444 4456789999999
Q ss_pred CCcEEEEEccCCCcEEEEEE
Q 022910 267 TGKVVSSLVSHTDSIECIGF 286 (290)
Q Consensus 267 ~~~~~~~~~~~~~~v~~i~~ 286 (290)
++..++++.. +.+|..|+.
T Consensus 420 s~evvQ~l~~-~epv~Dicp 438 (463)
T KOG1645|consen 420 SFEVVQTLAL-SEPVLDICP 438 (463)
T ss_pred hhheeeeccc-Ccceeecce
Confidence 9999999876 467776654
No 315
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.93 E-value=1.9e-06 Score=65.99 Aligned_cols=149 Identities=11% Similarity=0.074 Sum_probs=106.1
Q ss_pred CCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCE
Q 022910 73 SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGV 152 (290)
Q Consensus 73 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i 152 (290)
.++...+++.|+..+.+.--|..+++...... -..+|-+-+.- -|++++.|+..|.+++.+.++|.....+.....-=
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk 96 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK 96 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc
Confidence 34456788899999999999999988776543 22333333322 57789999999999999999998877776433211
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC
Q 022910 153 EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223 (290)
Q Consensus 153 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 223 (290)
......+++..+.+|+.|++.+..|.++..++.+.+...+...+-+..|....|+++...|.|.--..+..
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 22345678999999999999999999999999887765555555566664444555555666655554443
No 316
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.93 E-value=2.8e-09 Score=58.43 Aligned_cols=38 Identities=34% Similarity=0.642 Sum_probs=35.6
Q ss_pred CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEE
Q 022910 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWR 93 (290)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 93 (290)
++++.+.+|.++|++|+|+| .+.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 46889999999999999999 788999999999999997
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.92 E-value=3.1e-08 Score=87.31 Aligned_cols=149 Identities=18% Similarity=0.328 Sum_probs=118.5
Q ss_pred CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC---------CCcEEEEcC
Q 022910 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---------DGLVQIWDP 136 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~ 136 (290)
.|+-++. +++++.+|...|+|.+-|.++.+.++++..|++.|..+.. .|+.|++++. |..|+|||+
T Consensus 179 ~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 179 GVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred ceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhh
Confidence 3555554 4468889999999999999999999999999999987666 7889999875 567899999
Q ss_pred CCCceEEEEecCCCCEEEEEEcCC-CCEEEEeeCCCeEEEEEC---Ccc-cEEEeeecCCCCeEEEEEcCCCCEEEEEeC
Q 022910 137 SSGNLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNA---DRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~i~d~---~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 211 (290)
+..+.+.-+.-+.++ .-+.|+|. ...+++++..|...+.|. ... .-+..+...+..+.+++++++++.++.|..
T Consensus 254 Rmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~ 332 (1118)
T KOG1275|consen 254 RMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH 332 (1118)
T ss_pred hhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecc
Confidence 988877666655553 66788885 457888888999999993 333 123334445566999999999999999999
Q ss_pred CCeEEEEcC
Q 022910 212 DATLRVWNP 220 (290)
Q Consensus 212 dg~i~i~d~ 220 (290)
+|.|.+|--
T Consensus 333 ~g~v~~wa~ 341 (1118)
T KOG1275|consen 333 EGHVNLWAD 341 (1118)
T ss_pred cCcEeeecC
Confidence 999999973
No 318
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.92 E-value=4.7e-07 Score=81.20 Aligned_cols=139 Identities=17% Similarity=0.204 Sum_probs=96.8
Q ss_pred cEEEE-ecCCCcEEEEEccCCeeeeeeccccCC-EEEEEECCC-------CCEEEEEeCCCcEEEEcCCCCc--eEEE-E
Q 022910 78 TLVAT-GGGDDKGFFWRINQGDWASEIQGHKDS-VSSLAFSMD-------GQLLASGGLDGLVQIWDPSSGN--LKCT-L 145 (290)
Q Consensus 78 ~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~-i~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~--~~~~-~ 145 (290)
.+|+. ......|+-.|++.|+.+.....+... |..+ .|+ ....++|-.+..|..||.+-.. ++.. .
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 34433 344578899999999999998877643 5444 443 2345666678889999987532 2211 1
Q ss_pred e--cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC
Q 022910 146 E--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (290)
Q Consensus 146 ~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 220 (290)
+ ......+|++-+.+| +||+|+.+|.||+||--..+....+.+.+.+|..|..+.+|+++++.+.. .|.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 1 133457788777655 79999999999999954334445566778999999999999999888754 4556654
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=2.2e-07 Score=81.00 Aligned_cols=159 Identities=18% Similarity=0.304 Sum_probs=118.6
Q ss_pred ceeeeccCCcCEEEEEECCC------------CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCC-----
Q 022910 56 STHIFSGHSDEVYSVACSPT------------DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD----- 118 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~------------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~----- 118 (290)
....|..|.+.|.-..+.-. .|.++++|+.||+|.|-.+-+.+....+. ...++.+++++|+
T Consensus 50 ~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~ 128 (846)
T KOG2066|consen 50 KFFALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQ 128 (846)
T ss_pred ceeeeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhh
Confidence 44556678888877776553 47899999999999999999988877776 5678999999997
Q ss_pred CCEEEEEeCCCcEEEEcCCCC--ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCC---
Q 022910 119 GQLLASGGLDGLVQIWDPSSG--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS--- 193 (290)
Q Consensus 119 ~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--- 193 (290)
.+.+++|+..| +.++.-.-. +....+....++|.++.|. |+++|-++..| |++||+.+.+.+..+......
T Consensus 129 sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~ 204 (846)
T KOG2066|consen 129 SKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRP 204 (846)
T ss_pred hhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCc
Confidence 45899999888 777764321 2222456677899999994 78899888877 999999998887776543332
Q ss_pred ---eEEEEEcCCCCEEEEEeCCCeEEEEcCC
Q 022910 194 ---VTCGDFTPDGKTICTGSDDATLRVWNPK 221 (290)
Q Consensus 194 ---i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 221 (290)
...+.|.+. ..|+.|-.| +|+|..++
T Consensus 205 e~fpphl~W~~~-~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 205 ELFPPHLHWQDE-DRLVIGWGD-SVKICSIK 233 (846)
T ss_pred ccCCCceEecCC-CeEEEecCC-eEEEEEEe
Confidence 245677654 456666444 68888776
No 320
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.91 E-value=4.6e-06 Score=65.37 Aligned_cols=204 Identities=12% Similarity=0.155 Sum_probs=120.7
Q ss_pred eeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccc-cCCEEEEEECCCCCEEEEEeCCCcEEEEc
Q 022910 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH-KDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (290)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 135 (290)
.+.+.+-...+..|+|+|+.+.++++....+.|..++.. ++.+.++.-. .+..-.|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 345667777899999999778899999999999888864 6777766532 35578889987777777666689999998
Q ss_pred CCCCc----e--EEEEe-----cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCc---ccEEEe--------eecCCCC
Q 022910 136 PSSGN----L--KCTLE-----GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR---AAYLNM--------FSGHGSS 193 (290)
Q Consensus 136 ~~~~~----~--~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~--------~~~~~~~ 193 (290)
+.... . ...+. .+...+-.++|.|.++.|+++-...-..+|.+.. ...+.. .......
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 84321 1 11221 2334589999999888888877666666666543 111111 1123456
Q ss_pred eEEEEEcCC-CCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC------cccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 022910 194 VTCGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPY------HTEGLTCLTISADSTLALSGSKDGSVHMV 263 (290)
Q Consensus 194 i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 263 (290)
+.+++++|. +.+++.+.....|..+| ..|+.+..+.-... .-...-.|+|.++|++++++ .-+..+++
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 889999994 56667777888999999 56776665553321 12357889999998666554 55555554
No 321
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.91 E-value=7.9e-09 Score=56.59 Aligned_cols=39 Identities=38% Similarity=0.819 Sum_probs=36.6
Q ss_pred ccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEc
Q 022910 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (290)
Q Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 219 (290)
++++..+.+|...|.+|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357889999999999999999999999999999999997
No 322
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=5.9e-06 Score=69.83 Aligned_cols=218 Identities=16% Similarity=0.189 Sum_probs=157.9
Q ss_pred EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC---CCcEEEEcCCCCceEE
Q 022910 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSSGNLKC 143 (290)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~ 143 (290)
-..++.++.+.+.+++...+..|.+.|..+.+......... ....++++|+++.++++.. ++++.+.|..+++.+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 35678888666677777778999999988777766665333 5578999999987777755 6899999999998888
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEee-CCCeEEEEECCcccEEE-e---eecCCCCeEEEEEcCCCCEEEEEeCC---CeE
Q 022910 144 TLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLN-M---FSGHGSSVTCGDFTPDGKTICTGSDD---ATL 215 (290)
Q Consensus 144 ~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~---~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i 215 (290)
.......+ ..+++.|+++.++.+. .++.|.+.|.......+ . ..........+.++|++.++++.... +.+
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 75544444 8899999999666665 68899999987665553 1 11123345678899999977665544 589
Q ss_pred EEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcEEEEEccCCC---cEEEEEEec
Q 022910 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGKVVSSLVSHTD---SIECIGFSR 288 (290)
Q Consensus 216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~---~v~~i~~s~ 288 (290)
.+.|..++.......... .. ....+..+|+|.++.+... .+.+.+.|..+.+....+..... .+..+++.+
T Consensus 234 ~~id~~~~~v~~~~~~~~-~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 234 LKIDTATGNVTATDLPVG-SG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred EEEeCCCceEEEeccccc-cC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 999999887665522211 22 4667889999999888844 48999999999888887664332 355555544
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.84 E-value=6.5e-07 Score=75.91 Aligned_cols=138 Identities=15% Similarity=0.188 Sum_probs=92.8
Q ss_pred CEEEEEECCC-CCEEEEE----eCCCc----EEEEcCCCCceEE--EEe-cCCCCEEEEEEcCCCCEEEEeeCCCeEEEE
Q 022910 109 SVSSLAFSMD-GQLLASG----GLDGL----VQIWDPSSGNLKC--TLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176 (290)
Q Consensus 109 ~i~~~~~~~~-~~~l~~~----~~dg~----i~i~d~~~~~~~~--~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~ 176 (290)
...++.|+.. ...+.+. +.+|. -.+|++..++... ... .....+.+++++|+...|+.|+.||.|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 3466777753 3344443 22343 3466666554321 111 355679999999999999999999999999
Q ss_pred ECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee-------------eEEEeCCCCcccCeEEEE
Q 022910 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN-------------IHVIRGHPYHTEGLTCLT 243 (290)
Q Consensus 177 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------~~~~~~~~~~~~~v~~~~ 243 (290)
|...+..... ...-.++.++|+|+|.++++|+..|.|.+||+.-... .-.+..+-.+...+..+.
T Consensus 287 D~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iq 364 (545)
T PF11768_consen 287 DTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQ 364 (545)
T ss_pred EcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeE
Confidence 9877643322 3446678999999999999999999999999864322 122222223455667778
Q ss_pred EcCCC
Q 022910 244 ISADS 248 (290)
Q Consensus 244 ~~~~~ 248 (290)
|.+..
T Consensus 365 W~~~~ 369 (545)
T PF11768_consen 365 WAPAP 369 (545)
T ss_pred eccCC
Confidence 87543
No 324
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.83 E-value=9e-10 Score=93.26 Aligned_cols=201 Identities=22% Similarity=0.271 Sum_probs=134.6
Q ss_pred CcCEEEEEECCC-CCcEEEEecCCCcEEEEEccCCee--eeeeccccCCEEEEEECC-CCCEEEEEe----CCCcEEEEc
Q 022910 64 SDEVYSVACSPT-DATLVATGGGDDKGFFWRINQGDW--ASEIQGHKDSVSSLAFSM-DGQLLASGG----LDGLVQIWD 135 (290)
Q Consensus 64 ~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~----~dg~i~i~d 135 (290)
...+.|+++.-. +..++++|..+|.|-+-.+....- .....++....++++|++ |.++||+|- .+..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 446778886653 346889999999999988876432 234567888999999987 456777763 367899999
Q ss_pred CCCC--ceE--EEEec-CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC-CCCEEEEE
Q 022910 136 PSSG--NLK--CTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTG 209 (290)
Q Consensus 136 ~~~~--~~~--~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~ 209 (290)
+.++ .+. ..+.+ ......+++|-.+.+++++|.....+.++|++..... ........+..+.+.| .++++++.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~-~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS-VSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhh-hhhhhhhhcccceecCCCCCceecc
Confidence 9876 221 12222 2234568888888889999999999999999854321 1111334677788888 77777776
Q ss_pred eCCCeEEEEc-CCCCee-eEEEe-CCCCcccCeEEEEEcCCC-CEEEEEe-CCCcEEEEEcC
Q 022910 210 SDDATLRVWN-PKSGEN-IHVIR-GHPYHTEGLTCLTISADS-TLALSGS-KDGSVHMVNIT 266 (290)
Q Consensus 210 ~~dg~i~i~d-~~~~~~-~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~-~dg~i~~wd~~ 266 (290)
. ||.|.+|| .++-+. +..+. ........+..++|+|.. ..|++.. ..++|++|++.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 5 99999999 443332 22221 111123358999999932 3444444 45789999975
No 325
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.82 E-value=3.8e-06 Score=70.63 Aligned_cols=207 Identities=14% Similarity=0.162 Sum_probs=123.1
Q ss_pred CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeee-------------------------------------------ee
Q 022910 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-------------------------------------------SE 102 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-------------------------------------------~~ 102 (290)
.|+.+.|.+ ...-|++|...|.|.||.+...+.. ..
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 588999999 6667788889999999987532111 01
Q ss_pred eccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec--------CCCCEEEEEEcC-----CC---CEEEE
Q 022910 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG--------PGGGVEWVSWHP-----RG---HIVLA 166 (290)
Q Consensus 103 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~i~~i~~~~-----~~---~~l~~ 166 (290)
+....++|++++.+ +=.++|+|..+|.+.|.|++....+..-.. ....++++.|.. ++ -.+++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 12246789999997 555999999999999999988877765321 223678888863 22 48999
Q ss_pred eeCCCeEEEEECCc---cc----EEEeeecCCCCeEEEE-EcCC--------------------CCEEEEEeCCCeEEEE
Q 022910 167 GSEDSTVWMWNADR---AA----YLNMFSGHGSSVTCGD-FTPD--------------------GKTICTGSDDATLRVW 218 (290)
Q Consensus 167 ~~~dg~i~i~d~~~---~~----~~~~~~~~~~~i~~~~-~~~~--------------------~~~l~~~~~dg~i~i~ 218 (290)
|+..|.+.+|.+-- +. .......+.++|..|. ++.+ -.-+++......++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 99999999998752 11 1112223455655554 3211 0124444557789999
Q ss_pred cCCCCeeeEEEeCCCCcccCeEEEEEc-----CCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC
Q 022910 219 NPKSGENIHVIRGHPYHTEGLTCLTIS-----ADSTLALSGSKDGSVHMVNITTGKVVSSLVSH 277 (290)
Q Consensus 219 d~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 277 (290)
...+.+....... .......+++- ..+..|++-..+|.|++|.+..-+.+..+..+
T Consensus 241 ~~~~~k~~~K~~~---~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 241 KPPKSKGAHKSFD---DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp -TT---EEEEE-S---S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred eCCCCcccceeec---cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence 9988776655542 22223333442 25678888899999999999998888877653
No 326
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.76 E-value=1.3e-07 Score=73.93 Aligned_cols=183 Identities=17% Similarity=0.329 Sum_probs=122.1
Q ss_pred cCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc-----eEEEEecCC------------CCEEEEEEcCCC--CEEEEe
Q 022910 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-----LKCTLEGPG------------GGVEWVSWHPRG--HIVLAG 167 (290)
Q Consensus 107 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~------------~~i~~i~~~~~~--~~l~~~ 167 (290)
...|+++.|...|.|+++|...|.|.+|.-.... ....+++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4578999999999999999999999999765432 122344443 256778886543 378888
Q ss_pred eCCCeEEEEECCcccE------------------------------------------EEee-ecCCCCeEEEEEcCCCC
Q 022910 168 SEDSTVWMWNADRAAY------------------------------------------LNMF-SGHGSSVTCGDFTPDGK 204 (290)
Q Consensus 168 ~~dg~i~i~d~~~~~~------------------------------------------~~~~-~~~~~~i~~~~~~~~~~ 204 (290)
+.+.+|++|.+..... .+.+ ..|...|.++.|..+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 8999999998764310 0111 34666788999988877
Q ss_pred EEEEEeCCCeEEEEcCCCCeeeEEEeCCCCc-----ccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcE------EE
Q 022910 205 TICTGSDDATLRVWNPKSGENIHVIRGHPYH-----TEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKV------VS 272 (290)
Q Consensus 205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~------~~ 272 (290)
.++++ .|-.|.+|++.-...-..+...+.| ...|++..|+|. ...+.-.++.|.|++-|++...+ +.
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 77765 5778999998744322222111112 235888999993 45666677889999999983221 11
Q ss_pred ----------EEccCCCcEEEEEEecCC
Q 022910 273 ----------SLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 273 ----------~~~~~~~~v~~i~~s~d~ 290 (290)
-+.+-...|+.+.|+++|
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ng 292 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNG 292 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCC
Confidence 111223478888999876
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=5.8e-07 Score=79.06 Aligned_cols=173 Identities=19% Similarity=0.247 Sum_probs=116.8
Q ss_pred EECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCC-EEEEEEcCCCCEEEEeeCCC-----eEEEEECCcc------
Q 022910 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG-VEWVSWHPRGHIVLAGSEDS-----TVWMWNADRA------ 181 (290)
Q Consensus 114 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~------ 181 (290)
+|++.+..++.|+.+|.|.+++ +..+.++.++.+... ++.+....+.++|++.+.|+ .+++|+++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 4678889999999999998887 334555777776666 44444443446777766654 5999998753
Q ss_pred cEE---Eeee----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCC--CCeeeEEEeCCCCcccCeEEEEEcCCCCEEE
Q 022910 182 AYL---NMFS----GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK--SGENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (290)
Q Consensus 182 ~~~---~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 252 (290)
+++ +.+. ....++.+++++.+-+.+|+|-.+|.|..+.-. ..+-.+....+. ...+|+.+++..++..++
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~-~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHR-GKEPITGLALRSDGKSVL 187 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeecc-CCCCceeeEEecCCceeE
Confidence 233 2121 135678999999999999999999999988421 111111111121 578999999998887733
Q ss_pred EEeCCCcEEEEEcCCCcE-EEEEccCCCcEEEEEEec
Q 022910 253 SGSKDGSVHMVNITTGKV-VSSLVSHTDSIECIGFSR 288 (290)
Q Consensus 253 ~~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~i~~s~ 288 (290)
-...-..|.+|.+....+ ...+..|..++.|.+|++
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~ 224 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSD 224 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccceeeecCC
Confidence 333345799999874442 455777777888888875
No 328
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.75 E-value=4.6e-06 Score=71.02 Aligned_cols=191 Identities=16% Similarity=0.070 Sum_probs=118.9
Q ss_pred EEEEecCCCcEEEEEccCCeeeeeeccccCCEEE-EEECC--CCCEEEEEeCCCcEEEEcCCCCceEEEEecCC--C---
Q 022910 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSS-LAFSM--DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG--G--- 150 (290)
Q Consensus 79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~-~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~--- 150 (290)
.++.+..++.+..+|..+++.+..+......+.. ..-+| .+..++.++.+|.+..++..+++.+....... +
T Consensus 162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~ 241 (394)
T PRK11138 162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATE 241 (394)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccc
Confidence 3445666788888888888877766532111000 00011 13356777788999999999988765543211 0
Q ss_pred --CEEEEEEcC--CCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeee
Q 022910 151 --GVEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI 226 (290)
Q Consensus 151 --~i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 226 (290)
....+..+| .+..+++++.+|.+..+|+.+++.+-+.... ....+.. .+..+++++.+|.|..+|..+++.+
T Consensus 242 ~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 242 IDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred hhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEE
Confidence 011111222 3556777788899999999999876554321 1112222 4667888889999999999999875
Q ss_pred EEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC
Q 022910 227 HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH 277 (290)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 277 (290)
....... .....+... .+.+|+.++.+|.|+++|..+|+.+.+....
T Consensus 318 W~~~~~~--~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~ 364 (394)
T PRK11138 318 WSQSDLL--HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD 364 (394)
T ss_pred EcccccC--CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 5433211 111122222 2557788999999999999999998877643
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.74 E-value=4.1e-06 Score=72.87 Aligned_cols=178 Identities=11% Similarity=0.043 Sum_probs=113.6
Q ss_pred EecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC----CcEEEEcCCCCceEEEEecCCCCEEEEEE
Q 022910 82 TGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD----GLVQIWDPSSGNLKCTLEGPGGGVEWVSW 157 (290)
Q Consensus 82 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 157 (290)
+.-..+.+.+.|..+.+....+.-. +....+.++|+++++++.+.+ .++...+......+..+.... + .++
T Consensus 210 ~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~ 284 (635)
T PRK02888 210 PKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEA 284 (635)
T ss_pred ccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHh
Confidence 3334566777788877776666532 244678899999998887632 233333332222222221110 0 133
Q ss_pred cCCCCEEEEeeCCCeEEEEECCc-----ccEEEeeecCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEcCCCCeeeE----
Q 022910 158 HPRGHIVLAGSEDSTVWMWNADR-----AAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DATLRVWNPKSGENIH---- 227 (290)
Q Consensus 158 ~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~---- 227 (290)
.++|++...+ ++.|.+.|.++ .+.+..+. .......+.++|+|+++++++. +.+|.|+|+.+.+...
T Consensus 285 vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 4577766663 57899999998 34444444 5667789999999999876554 8899999998755310
Q ss_pred ----EEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910 228 ----VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 228 ----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 267 (290)
.+.............+|.++|..+.+-..|..|..|++.+
T Consensus 362 ~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 1111111233445678999998888888899999999876
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.74 E-value=2.2e-06 Score=72.84 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=83.6
Q ss_pred CEEEEEECCCCCcEEEEe----cCCCc----EEEEEccCCeeeee---eccccCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 022910 66 EVYSVACSPTDATLVATG----GGDDK----GFFWRINQGDWASE---IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~----~~dg~----i~iw~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 134 (290)
...++.|+...++.+.|- +.+|. -.+|++..++.... --.....|.|++++|+...++.|+.||+|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 345777776556655553 33443 45677665543221 11367789999999999999999999999999
Q ss_pred cCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc
Q 022910 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (290)
Q Consensus 135 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~ 181 (290)
|...+... +....-..+.++|||+|..+++|+..|.+.+||+.-.
T Consensus 287 D~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 98776433 2234456789999999999999999999999998644
No 331
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.71 E-value=3.8e-06 Score=71.53 Aligned_cols=194 Identities=14% Similarity=0.093 Sum_probs=118.0
Q ss_pred EEEEecCCCcEEEEEccCCeeeeeeccccC-CE-E-----EEEECC--CCCEEEEEeCCCcEEEEcCCCCceEEEEecCC
Q 022910 79 LVATGGGDDKGFFWRINQGDWASEIQGHKD-SV-S-----SLAFSM--DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG 149 (290)
Q Consensus 79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~i-~-----~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 149 (290)
.+++++.+|.+.-+|..+++.+........ .. . .+.-.| .+..++.++.+|.++.+|..+|+.+-......
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 555667789999999999988776542210 00 0 000011 35577788889999999999999887766443
Q ss_pred CCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeE-EEEEcC--CCCEEEEEeCCCeEEEEcCCCCeee
Q 022910 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVT-CGDFTP--DGKTICTGSDDATLRVWNPKSGENI 226 (290)
Q Consensus 150 ~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 226 (290)
........ .+..+++++.+|.|+.+|..+++.+-.+......+. ...-+| .+..++.++.+|.+..+|..+++.+
T Consensus 151 ~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~ 228 (394)
T PRK11138 151 EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLI 228 (394)
T ss_pred ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhh
Confidence 21111122 245677788889999999999998876653211110 000122 2345777888999999999998876
Q ss_pred EEEeCCCCcc-c---CeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEE
Q 022910 227 HVIRGHPYHT-E---GLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVVSSL 274 (290)
Q Consensus 227 ~~~~~~~~~~-~---~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 274 (290)
.......... . ....+..+| .+..+++++.+|.++.+|+.+|+.+.+.
T Consensus 229 W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 229 WQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred heeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 5543211000 0 011111222 2445666677888888888888766554
No 332
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=6.6e-05 Score=63.50 Aligned_cols=223 Identities=14% Similarity=0.170 Sum_probs=144.1
Q ss_pred CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceEEE
Q 022910 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCT 144 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~ 144 (290)
....+.+.|.+..+.++-.....+...+................-..+++++.+..+ ++...++.|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 445667777444544444333345555544222222122111334567888888744 4444568999999888877766
Q ss_pred EecCCCCEEEEEEcCCCCEEEEeeC---CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEcC
Q 022910 145 LEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNP 220 (290)
Q Consensus 145 ~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~ 220 (290)
..... ....++++|+++.++++.. ++.+.+.|..+.+.+........+ ..+++.|+|..+++.. .++.|.++|.
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~ 189 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDT 189 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeC
Confidence 65433 5678999999987777766 688999999998888875544344 8899999999766554 7889999997
Q ss_pred CCCeeeE-EEeCCCCcccCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEE-EccCCCcEEEEEEecCC
Q 022910 221 KSGENIH-VIRGHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNITTGKVVSS-LVSHTDSIECIGFSRSE 290 (290)
Q Consensus 221 ~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~-~~~~~~~v~~i~~s~d~ 290 (290)
.+..... ..............+.++|+|.++++.... +.+...|..++..... +.........+..+|+|
T Consensus 190 ~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g 264 (381)
T COG3391 190 SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAG 264 (381)
T ss_pred CCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCC
Confidence 7665542 100001123445678999999977666544 5999999998887776 22211145566666654
No 333
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.66 E-value=2.9e-05 Score=60.39 Aligned_cols=142 Identities=15% Similarity=0.172 Sum_probs=93.7
Q ss_pred EEECCCCCEEEEEeCCCcEEEEcCCCC--ceEEEEe---cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee
Q 022910 113 LAFSMDGQLLASGGLDGLVQIWDPSSG--NLKCTLE---GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF 187 (290)
Q Consensus 113 ~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 187 (290)
++.+.+|+.||+.- |..|.|-..+.. ..+.... .....-+.++|+|++..||.+...|+|++||+..... ..+
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVI 80 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEc
Confidence 55677888777654 677777765543 2222222 2333567899999999999999999999999976433 233
Q ss_pred ec-------CCCCeEEEEEcCC------CCEEEEEeCCCeEEEEcCCC-----CeeeEEEeCCCCcccCeEEEEEcCCCC
Q 022910 188 SG-------HGSSVTCGDFTPD------GKTICTGSDDATLRVWNPKS-----GENIHVIRGHPYHTEGLTCLTISADST 249 (290)
Q Consensus 188 ~~-------~~~~i~~~~~~~~------~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~ 249 (290)
.. ....|..|.|.+. ...|++-...|.++-|-+.. .+....+.....+..+|+++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 22 2346777777652 12456666788888776532 233344444334678999999999988
Q ss_pred EEEEEeC
Q 022910 250 LALSGSK 256 (290)
Q Consensus 250 ~l~~~~~ 256 (290)
+|++|+.
T Consensus 161 LLlVgG~ 167 (282)
T PF15492_consen 161 LLLVGGC 167 (282)
T ss_pred EEEEecc
Confidence 8887764
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.65 E-value=9.3e-07 Score=76.25 Aligned_cols=144 Identities=13% Similarity=0.168 Sum_probs=100.6
Q ss_pred cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (290)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 143 (290)
..|.--++.. ...+++.|+.-|.+++|+-..++....-. +-.+.+..+..+++..++|.|+..|.|.++-+....+..
T Consensus 34 ~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 34 ARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred ceEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3444334444 66789999999999999987766544332 234455667778888899999999999999887643221
Q ss_pred ---E--E-ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc----cEEEeeecCCCCeEEEEEcCCCCEEEEEe
Q 022910 144 ---T--L-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA----AYLNMFSGHGSSVTCGDFTPDGKTICTGS 210 (290)
Q Consensus 144 ---~--~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 210 (290)
. . +.|...|++++|++++..+++|...|.|..-.+... ...+.+....+.|..+.+. ++.+|++..
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl 188 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTL 188 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhh
Confidence 1 1 236778999999999999999999999999888772 1223333456677777765 333444433
No 335
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.64 E-value=3.5e-06 Score=71.60 Aligned_cols=171 Identities=16% Similarity=0.207 Sum_probs=109.2
Q ss_pred CeeeeeeccccCCEEEEEECCCCCEEEEEe---CC-CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEee-CCC
Q 022910 97 GDWASEIQGHKDSVSSLAFSMDGQLLASGG---LD-GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDS 171 (290)
Q Consensus 97 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d-g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg 171 (290)
+.....+......+..-+|+|+++.++..+ .. ..+.++++.+++....+. ..+.-...+|+|+|+.|+.+. .+|
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence 333444444455677788999998655542 22 469999999987665555 333455678999999777654 455
Q ss_pred --eEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe-CCC--eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC
Q 022910 172 --TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246 (290)
Q Consensus 172 --~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 246 (290)
.|+++|+.++...+ +....+.-..-.|+|+|++++-.+ ..| .|.++++........... ...-..-.|+|
T Consensus 261 ~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~----~~~~~~p~~Sp 335 (425)
T COG0823 261 SPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS----GGGNSNPVWSP 335 (425)
T ss_pred CccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc----CCCCcCccCCC
Confidence 48888888777333 443333334667999999987554 344 477778776665333322 22222678999
Q ss_pred CCCEEEEEeCC-Cc--EEEEEcCCCcEEEE
Q 022910 247 DSTLALSGSKD-GS--VHMVNITTGKVVSS 273 (290)
Q Consensus 247 ~~~~l~~~~~d-g~--i~~wd~~~~~~~~~ 273 (290)
+|++|+..+.. |. |.+.++.++..++.
T Consensus 336 dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~ 365 (425)
T COG0823 336 DGDKIVFESSSGGQWDIDKNDLASGGKIRI 365 (425)
T ss_pred CCCEEEEEeccCCceeeEEeccCCCCcEEE
Confidence 99998877753 44 66777766553333
No 336
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=1.6e-06 Score=72.70 Aligned_cols=141 Identities=18% Similarity=0.278 Sum_probs=97.1
Q ss_pred CCCE-EEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCC-------EEEEeeCCCeEEEEECCcccE--EEee
Q 022910 118 DGQL-LASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-------IVLAGSEDSTVWMWNADRAAY--LNMF 187 (290)
Q Consensus 118 ~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~--~~~~ 187 (290)
+.++ |.++.....|+-.|++.|+.+..++.+.. |+-+.+.|+.+ .-+.|-.+..|.-||.|-... +...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 4444 33445556788899999999999987776 77788888643 234566788899999874321 2111
Q ss_pred ec----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee-eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 022910 188 SG----HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262 (290)
Q Consensus 188 ~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 262 (290)
.. ......|.+-..+ .++++|+.+|.||+||. .+.. ...+++ ...+|..+..+.+|++|++.+ +..+.+
T Consensus 423 q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPg---LG~~I~hVdvtadGKwil~Tc-~tyLlL 496 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPG---LGDAIKHVDVTADGKWILATC-KTYLLL 496 (644)
T ss_pred eccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccc---cCCceeeEEeeccCcEEEEec-ccEEEE
Confidence 21 2234455555444 48999999999999998 4443 233444 788999999999999988766 456666
Q ss_pred EEc
Q 022910 263 VNI 265 (290)
Q Consensus 263 wd~ 265 (290)
.++
T Consensus 497 i~t 499 (644)
T KOG2395|consen 497 IDT 499 (644)
T ss_pred EEE
Confidence 665
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.63 E-value=2.2e-08 Score=85.12 Aligned_cols=162 Identities=17% Similarity=0.223 Sum_probs=108.4
Q ss_pred eeeeccCCcCEEEEEECCCCCcEEEEec----CCCcEEEEEccCC--eeee--eecc-ccCCEEEEEECCCCCEEEEEeC
Q 022910 57 THIFSGHSDEVYSVACSPTDATLVATGG----GDDKGFFWRINQG--DWAS--EIQG-HKDSVSSLAFSMDGQLLASGGL 127 (290)
Q Consensus 57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~----~dg~i~iw~~~~~--~~~~--~~~~-~~~~i~~~~~~~~~~~l~~~~~ 127 (290)
.....+|..+.++++|++-+.+.||+|- .+..+.|||+.++ .+.. .+.. -.....+++|..+.+.+.+|..
T Consensus 95 ~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~ 174 (783)
T KOG1008|consen 95 AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT 174 (783)
T ss_pred ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc
Confidence 4455678889999999998888888773 3567999999875 2221 1222 2234558889888889999999
Q ss_pred CCcEEEEcCCCCc-eEEEEecCCCCEEEEEEcC-CCCEEEEeeCCCeEEEEE-CCccc-EEEeeec----CCCCeEEEEE
Q 022910 128 DGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWN-ADRAA-YLNMFSG----HGSSVTCGDF 199 (290)
Q Consensus 128 dg~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~i~d-~~~~~-~~~~~~~----~~~~i~~~~~ 199 (290)
...+.++|++... ....+ .+..+..+...| .++++++-. +|.|.+|| .++-+ ++..+.. ....+..++|
T Consensus 175 sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ay 251 (783)
T KOG1008|consen 175 SRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAY 251 (783)
T ss_pred cchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEe
Confidence 9999999987432 12222 233466677888 566666655 89999999 43322 2222221 2235899999
Q ss_pred cCCC-CEEEE-EeCCCeEEEEcCC
Q 022910 200 TPDG-KTICT-GSDDATLRVWNPK 221 (290)
Q Consensus 200 ~~~~-~~l~~-~~~dg~i~i~d~~ 221 (290)
.|.. ..+++ .-..++|+.||+.
T Consensus 252 cPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 252 CPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccCCcchhhhhccCcceEEEeccc
Confidence 9933 23444 4456789999986
No 338
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=1.4e-06 Score=76.79 Aligned_cols=189 Identities=15% Similarity=0.229 Sum_probs=129.7
Q ss_pred EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE---
Q 022910 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC--- 143 (290)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--- 143 (290)
+++++|+| ...+|+.|-.-|.+.+|...+.+.......|..+|..+.|+++|..++++..-|.|.+|....-..++
T Consensus 62 atSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~ 140 (1416)
T KOG3617|consen 62 ATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSN 140 (1416)
T ss_pred hhhhccCh-HHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccch
Confidence 45699999 88899999999999999998877766677899999999999999999999999999999875211110
Q ss_pred ---------------EEec---------------CCCCEE------------EE--EEcCCCCEEEEeeCCCeEEEEECC
Q 022910 144 ---------------TLEG---------------PGGGVE------------WV--SWHPRGHIVLAGSEDSTVWMWNAD 179 (290)
Q Consensus 144 ---------------~~~~---------------~~~~i~------------~i--~~~~~~~~l~~~~~dg~i~i~d~~ 179 (290)
.+.. ....+- ++ .-.|+|..|+.++.+|+|+..|-.
T Consensus 141 ~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~ 220 (1416)
T KOG3617|consen 141 IMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQN 220 (1416)
T ss_pred hhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCC
Confidence 0000 000000 00 012467788888899998888733
Q ss_pred cccE-------------------EEe-------------------------ee---------------------------
Q 022910 180 RAAY-------------------LNM-------------------------FS--------------------------- 188 (290)
Q Consensus 180 ~~~~-------------------~~~-------------------------~~--------------------------- 188 (290)
..+. +.. +.
T Consensus 221 g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~ 300 (1416)
T KOG3617|consen 221 GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGL 300 (1416)
T ss_pred CcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhh
Confidence 2110 000 00
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC-------eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC
Q 022910 189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG-------ENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256 (290)
Q Consensus 189 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 256 (290)
.....+.|++++..+..|..|...|.+.+|--... .....+.+.....+.|+.+.|.|-.+.+++-+.
T Consensus 301 e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~ 375 (1416)
T KOG3617|consen 301 ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTE 375 (1416)
T ss_pred hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhh
Confidence 01345789999998889999999999999953321 234555555556678999999986555554443
No 339
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.61 E-value=6.2e-05 Score=61.18 Aligned_cols=212 Identities=16% Similarity=0.152 Sum_probs=134.0
Q ss_pred EEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec-
Q 022910 69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG- 147 (290)
Q Consensus 69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 147 (290)
+-.|.+..+.++.+--..+.|.-|+..+++... +. +.+.+.++.....+..|+++.. -+.+++..++..+..+..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccc
Confidence 345777566677787788899999987654322 22 2233344444444445555542 366777766655333321
Q ss_pred ----CCCCEEEEEEcCCCCEEEEeeC-----------CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeC-
Q 022910 148 ----PGGGVEWVSWHPRGHIVLAGSE-----------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD- 211 (290)
Q Consensus 148 ----~~~~i~~i~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 211 (290)
.....+.....|+|.+.++... -|.|+.++. .+..++.+..+-.....|+|||+++.|+.+..
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 1235667888999887766544 133444443 45556666555566688999999988877655
Q ss_pred CCeEEEEcCCC--Ce---eeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCcEEEEEccCCCcEEEEE
Q 022910 212 DATLRVWNPKS--GE---NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-SVHMVNITTGKVVSSLVSHTDSIECIG 285 (290)
Q Consensus 212 dg~i~i~d~~~--~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~v~~i~ 285 (290)
.+.|..|++.. +. ....+. .....+..-.++...+|.+.+++...| .|.+|+.. |+++..+..+...+++++
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~-~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVD-FDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEE-ccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 47888887652 11 111111 111445667788888898886665554 99999987 999999887767777777
Q ss_pred Ee
Q 022910 286 FS 287 (290)
Q Consensus 286 ~s 287 (290)
|-
T Consensus 262 Fg 263 (307)
T COG3386 262 FG 263 (307)
T ss_pred Ee
Confidence 74
No 340
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.61 E-value=3.9e-05 Score=60.24 Aligned_cols=187 Identities=18% Similarity=0.281 Sum_probs=111.9
Q ss_pred eeccccCCEEEEEECCCCC-EEEEEeCCCcEEEEcCCCCceEEEEecCC-CCEEEEEEcCCCCEEEEeeCCCeEEEEECC
Q 022910 102 EIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPG-GGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (290)
Q Consensus 102 ~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~ 179 (290)
.+.+-...++.++|+|+.+ ++++....+.|..++. +|+.+..+.... +-.-.|++..++.++++.-.++.+.++.+.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4455556799999999765 6666677888888886 478887776433 458889998777777766668999999884
Q ss_pred ccc------EEEeee-----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCC---CeeeEEEeC-----CCCcccCeE
Q 022910 180 RAA------YLNMFS-----GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS---GENIHVIRG-----HPYHTEGLT 240 (290)
Q Consensus 180 ~~~------~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~-----~~~~~~~v~ 240 (290)
... ....+. .++..+-.++|.|.++.|+++-......+|.++. ...+..... .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 112221 2455689999999888888887776667776653 222111110 111344578
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC---------CcEEEEEEecCC
Q 022910 241 CLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSHT---------DSIECIGFSRSE 290 (290)
Q Consensus 241 ~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~---------~~v~~i~~s~d~ 290 (290)
+++++| .+++++.......|..+| .+|+++..+.-.. ..--+|+|.++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G 233 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG 233 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence 899999 567777788888999999 6788877665332 256789998876
No 341
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.59 E-value=3.4e-05 Score=67.30 Aligned_cols=187 Identities=13% Similarity=0.029 Sum_probs=112.3
Q ss_pred cEEEEecCCCcEEEEEccCCeeeeeecccc-------------CCEE-------EEEE--------C-----CCCCEEEE
Q 022910 78 TLVATGGGDDKGFFWRINQGDWASEIQGHK-------------DSVS-------SLAF--------S-----MDGQLLAS 124 (290)
Q Consensus 78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-------------~~i~-------~~~~--------~-----~~~~~l~~ 124 (290)
+.|.+|+..|.++|+-+.+++.+..+.... ..|. .+.| | -+|+||+.
T Consensus 67 y~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fi 146 (635)
T PRK02888 67 YGFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFI 146 (635)
T ss_pred EEEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEE
Confidence 467789999999999999988776652110 0111 0111 1 15667766
Q ss_pred EeC-CCcEEEEcCCCCceEEEEecC-CCCEEEEE-------------------EcCCCCEEEEe-eCCCeEEEEECCccc
Q 022910 125 GGL-DGLVQIWDPSSGNLKCTLEGP-GGGVEWVS-------------------WHPRGHIVLAG-SEDSTVWMWNADRAA 182 (290)
Q Consensus 125 ~~~-dg~i~i~d~~~~~~~~~~~~~-~~~i~~i~-------------------~~~~~~~l~~~-~~dg~i~i~d~~~~~ 182 (290)
-.. ...|-..++...++-+.+..+ ...+..+. +.|+|+.+... -..+.+.+.|..+.+
T Consensus 147 ndk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etme 226 (635)
T PRK02888 147 NDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETME 226 (635)
T ss_pred ecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccce
Confidence 543 445555555544433322211 11222222 23455444322 224567788888777
Q ss_pred EEEeeecCCCCeEEEEEcCCCCEEEEEe----------------------------------------CCCeEEEEcCCC
Q 022910 183 YLNMFSGHGSSVTCGDFTPDGKTICTGS----------------------------------------DDATLRVWNPKS 222 (290)
Q Consensus 183 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------------------------------------~dg~i~i~d~~~ 222 (290)
...++... .....++++|+|+++++.+ .++.|.++|.++
T Consensus 227 V~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t 305 (635)
T PRK02888 227 VAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRK 305 (635)
T ss_pred EEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCc
Confidence 66665533 3456678888888887765 124577777776
Q ss_pred -----CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCc
Q 022910 223 -----GENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGK 269 (290)
Q Consensus 223 -----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~ 269 (290)
...+..+. -......+.++|||+++++++. +.+|.|+|+.+.+
T Consensus 306 ~~~~~~~v~~yIP----VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 306 AANAGSALTRYVP----VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred cccCCcceEEEEE----CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 33444444 3456778999999998887766 8899999998855
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.58 E-value=8.5e-05 Score=63.35 Aligned_cols=191 Identities=12% Similarity=0.085 Sum_probs=105.7
Q ss_pred cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc------eEEEEecCCCCEEEEEEcCCC
Q 022910 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN------LKCTLEGPGGGVEWVSWHPRG 161 (290)
Q Consensus 88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~i~~i~~~~~~ 161 (290)
.|+||+.. |+.+.++.-..+.|.++.|+.+. .|++...+|.+++||+.... .+.........+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 48889865 45566555444899999998754 55566789999999986333 011111111222333333345
Q ss_pred CEEEEeeCCCeEEEEECCccc-EEEeeecCCCCeE----------EEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEe
Q 022910 162 HIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVT----------CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230 (290)
Q Consensus 162 ~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~----------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 230 (290)
-.+++ .++.+++..--... ..+.+........ ...++.+....+....++.+.+.+....+. +.
T Consensus 140 ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~ 214 (410)
T PF04841_consen 140 IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID 214 (410)
T ss_pred EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence 33333 34445444322211 1111111001000 012333334444444445555443322111 11
Q ss_pred CCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC-CCcEEEEEEecC
Q 022910 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH-TDSIECIGFSRS 289 (290)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~i~~s~d 289 (290)
..+++..|++||++++||.-..+|.+.+....-.+.+..+... ......|.|.-+
T Consensus 215 ----~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 215 ----SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred ----CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 2467999999999999999999999999987766677666654 356778888654
No 343
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.56 E-value=2.9e-05 Score=71.30 Aligned_cols=178 Identities=16% Similarity=0.214 Sum_probs=119.4
Q ss_pred cCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECC----cc-
Q 022910 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD----RA- 181 (290)
Q Consensus 107 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~----~~- 181 (290)
...|.++.|..+...++.+...|.|.+-|..+......-. -...|.+++|+|+...++..+..+++.+-.-. ..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~-vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN-VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeee-ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 3589999999999999999999999999888765443322 34569999999999999999988887765320 00
Q ss_pred ------------------cEEEeeecC---------------------CCCeEEEEEcCCCCEEEEE-----eCCCeEEE
Q 022910 182 ------------------AYLNMFSGH---------------------GSSVTCGDFTPDGKTICTG-----SDDATLRV 217 (290)
Q Consensus 182 ------------------~~~~~~~~~---------------------~~~i~~~~~~~~~~~l~~~-----~~dg~i~i 217 (290)
+....+.+. ...=+.|.|--+|.++++. .....|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 101112210 1122458899999999883 22378999
Q ss_pred EcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEe---CCCcEEEEEcCCCcE----EEEEccCCCcEEEEEEecCC
Q 022910 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS---KDGSVHMVNITTGKV----VSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 218 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~----~~~~~~~~~~v~~i~~s~d~ 290 (290)
||.. +..- ..... ....-.+++|-|.|..+++-. .++.|.+|.- +|-. ...++.....|..++|+.++
T Consensus 227 ~drE-g~Ln-s~se~--~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 227 YDRE-GALN-STSEP--VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred eccc-chhh-cccCc--ccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCC
Confidence 9987 4332 22211 334456799999999998863 4667999984 3433 22333334458999998763
No 344
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.55 E-value=6.6e-05 Score=65.70 Aligned_cols=195 Identities=15% Similarity=0.219 Sum_probs=122.9
Q ss_pred EEEEecCCCcEEEEEccCCeeeeeeccccC------CEE--EEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCC
Q 022910 79 LVATGGGDDKGFFWRINQGDWASEIQGHKD------SVS--SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG 150 (290)
Q Consensus 79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~i~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 150 (290)
.++.++.++.|.-.|..+++.+..+..... .+. .+... ++..++.++.++.|+-+|..+++.+-.+.....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~ 141 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ 141 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence 455667789999999999988776653221 010 11111 226788888899999999999998877664322
Q ss_pred C--EEEEEEcC--CCCEEEEee---------CCCeEEEEECCcccEEEeeecCCC--------------------Ce-EE
Q 022910 151 G--VEWVSWHP--RGHIVLAGS---------EDSTVWMWNADRAAYLNMFSGHGS--------------------SV-TC 196 (290)
Q Consensus 151 ~--i~~i~~~~--~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~--------------------~i-~~ 196 (290)
. -..+.-+| .+.+++.++ .+|.++.+|..+++.+-++..... .+ ..
T Consensus 142 ~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~ 221 (488)
T cd00216 142 VPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWAS 221 (488)
T ss_pred cCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCC
Confidence 1 00111111 124455554 368899999999987766543211 01 12
Q ss_pred EEEcCCCCEEEEEeCCC------------------eEEEEcCCCCeeeEEEeCCCCcc----cCeEEEEEc----CCCC-
Q 022910 197 GDFTPDGKTICTGSDDA------------------TLRVWNPKSGENIHVIRGHPYHT----EGLTCLTIS----ADST- 249 (290)
Q Consensus 197 ~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~----~~v~~~~~~----~~~~- 249 (290)
.++.+.+..+++++.++ .|.-+|+.+++....++... +. .......+. -++.
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~-~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTP-HDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCC-CCCcccccCCCCeEEeccccCCCe
Confidence 34455567788887665 79999999999988775321 11 000111111 1333
Q ss_pred --EEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910 250 --LALSGSKDGSVHMVNITTGKVVSSLV 275 (290)
Q Consensus 250 --~l~~~~~dg~i~~wd~~~~~~~~~~~ 275 (290)
++++++.+|.++.+|..+|+.+....
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 68888899999999999999887654
No 345
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.1e-06 Score=71.07 Aligned_cols=94 Identities=13% Similarity=0.185 Sum_probs=79.9
Q ss_pred EEEEcCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCC-CCEEEE
Q 022910 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKTICT 208 (290)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~ 208 (290)
+++.+..+.+....+..+...|..++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-+ ..+|++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 66666666666666777888999999999877 7888999999999999999999998877 78999999875 467889
Q ss_pred EeCCCeEEEEcCCCCee
Q 022910 209 GSDDATLRVWNPKSGEN 225 (290)
Q Consensus 209 ~~~dg~i~i~d~~~~~~ 225 (290)
|-..|.|.|||++..+.
T Consensus 254 Gl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEG 270 (463)
T ss_pred eccCceEEEEEccCCCc
Confidence 99999999999997654
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.49 E-value=3.1e-05 Score=66.18 Aligned_cols=165 Identities=16% Similarity=0.135 Sum_probs=91.2
Q ss_pred ccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEE
Q 022910 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN 185 (290)
Q Consensus 106 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 185 (290)
.......+.++|+++++++++ +|...|+.....+... . +.-...+|.+ .+.+|+-...+.|.++.--+.....
T Consensus 31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~--~---G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA--F---GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE--E---EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc--c---CceeEEEEec-CccEEEEECCCeEEEEEcCccccce
Confidence 444578899999999988855 7888888743333222 1 2244578888 4557777778889997432333223
Q ss_pred eeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910 186 MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (290)
Q Consensus 186 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~ 265 (290)
.+.. ...+..|-. |.+|+..+.+ .|.+||..+++.+..+.. .+|..+.|++++.+++..+.+ .+++++.
T Consensus 104 ~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-----~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 104 SIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV-----SAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS------E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred EEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec-----CCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 3332 223444432 7777777654 899999999999888873 238999999999999988765 6777775
Q ss_pred CCC-----------cEEEEEccCCCcEEEEEEec
Q 022910 266 TTG-----------KVVSSLVSHTDSIECIGFSR 288 (290)
Q Consensus 266 ~~~-----------~~~~~~~~~~~~v~~i~~s~ 288 (290)
... ..+..+..-...|.+.+|..
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~ 206 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE 206 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEc
Confidence 433 02222222245677777754
No 347
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.48 E-value=4.8e-05 Score=63.79 Aligned_cols=201 Identities=15% Similarity=0.203 Sum_probs=113.3
Q ss_pred CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecC-----------------
Q 022910 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP----------------- 148 (290)
Q Consensus 86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------- 148 (290)
.+.+.|||+.+++...... ....+....|+|+|++++... ++.|.++++.++...+.....
T Consensus 22 ~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 4679999999976555444 367788999999999999887 578999998877544322211
Q ss_pred CCCEEEEEEcCCCCEEEEeeCCC------------------------------------eEEEEECCcccEEE--ee---
Q 022910 149 GGGVEWVSWHPRGHIVLAGSEDS------------------------------------TVWMWNADRAAYLN--MF--- 187 (290)
Q Consensus 149 ~~~i~~i~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~~~~~~--~~--- 187 (290)
-+.-..+.|+|++++|+....|- .+.++++.+++... ..
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~ 179 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL 179 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence 12235688999999888754321 23344444443211 11
Q ss_pred ecCCCCeEEEEEcCCCCEEEEE--eCC---CeEEEEcCCCCeeeEEEeCC-CCcccCeEEEEEc-CC-CCEEEEEeCCC-
Q 022910 188 SGHGSSVTCGDFTPDGKTICTG--SDD---ATLRVWNPKSGENIHVIRGH-PYHTEGLTCLTIS-AD-STLALSGSKDG- 258 (290)
Q Consensus 188 ~~~~~~i~~~~~~~~~~~l~~~--~~d---g~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~~-~~-~~~l~~~~~dg- 258 (290)
......+..+.|.+++..|+.. ..+ ..+.++|..++.....+... ...-..-....|. ++ ..+|.....+|
T Consensus 180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence 1234457888999988844432 222 24667788776553333211 0111122244444 54 45566666777
Q ss_pred -cEEEEEcCCCcEEEEEccCCCcEEE-EEEecC
Q 022910 259 -SVHMVNITTGKVVSSLVSHTDSIEC-IGFSRS 289 (290)
Q Consensus 259 -~i~~wd~~~~~~~~~~~~~~~~v~~-i~~s~d 289 (290)
.|++++...+. ...+....-.|.. +.|+++
T Consensus 260 ~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~ 291 (353)
T PF00930_consen 260 RHLYLYDLDGGK-PRQLTSGDWEVTSILGWDED 291 (353)
T ss_dssp EEEEEEETTSSE-EEESS-SSS-EEEEEEEECT
T ss_pred cEEEEEcccccc-eeccccCceeecccceEcCC
Confidence 46666665554 4456555556754 445543
No 348
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.44 E-value=0.00036 Score=53.88 Aligned_cols=169 Identities=15% Similarity=0.122 Sum_probs=103.6
Q ss_pred ceeeeccCCcCEEEEEECCC------------------CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECC
Q 022910 56 STHIFSGHSDEVYSVACSPT------------------DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117 (290)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~~~------------------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (290)
.....-.|...+.++.+-.. -+.+++.|+..|.+++.+.+++.....+.....--......+
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~ 103 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDF 103 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcC
Confidence 44455567777777665430 124577889999999999999977766653322112234567
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc--EEEeeecCCCCeE
Q 022910 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVT 195 (290)
Q Consensus 118 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~ 195 (290)
++..|..++.|++.+..|..+...+...+...+...+-+..|-...|+.+...|.+.--...... .+.... ..++|.
T Consensus 104 ~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~-~~~PiF 182 (354)
T KOG4649|consen 104 DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT-RFGPIF 182 (354)
T ss_pred CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhh-cCCccc
Confidence 89999999999999999999999998887666655555666644455555555666555444331 111111 122332
Q ss_pred E--EEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEE
Q 022910 196 C--GDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229 (290)
Q Consensus 196 ~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 229 (290)
+ ++ -+..+..++-||.+.-++ ..|+.+...
T Consensus 183 ~splc---v~~sv~i~~VdG~l~~f~-~sG~qvwr~ 214 (354)
T KOG4649|consen 183 ASPLC---VGSSVIITTVDGVLTSFD-ESGRQVWRP 214 (354)
T ss_pred cCcee---ccceEEEEEeccEEEEEc-CCCcEEEee
Confidence 2 11 133455566677776666 444444433
No 349
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.43 E-value=9.7e-05 Score=64.69 Aligned_cols=185 Identities=14% Similarity=0.187 Sum_probs=117.6
Q ss_pred CCCcEEEEEccCCeeeeeeccccC--------------------CE-EEEEECCCCCEEEEEeCCC--------------
Q 022910 85 GDDKGFFWRINQGDWASEIQGHKD--------------------SV-SSLAFSMDGQLLASGGLDG-------------- 129 (290)
Q Consensus 85 ~dg~i~iw~~~~~~~~~~~~~~~~--------------------~i-~~~~~~~~~~~l~~~~~dg-------------- 129 (290)
.+|.+..+|..+++.+..+..... .+ ...++.+.+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 367889999999988776643211 01 1234444566777777655
Q ss_pred ----cEEEEcCCCCceEEEEecCCCCEE------EEEEc----CCCC---EEEEeeCCCeEEEEECCcccEEEeeecCCC
Q 022910 130 ----LVQIWDPSSGNLKCTLEGPGGGVE------WVSWH----PRGH---IVLAGSEDSTVWMWNADRAAYLNMFSGHGS 192 (290)
Q Consensus 130 ----~i~i~d~~~~~~~~~~~~~~~~i~------~i~~~----~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 192 (290)
.|.-+|+.+++.+-.++....... ...+. -++. .+++++.+|.++.+|.++++.+-.....
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-- 330 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-- 330 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--
Confidence 799999999998877653211111 00111 1232 6788889999999999999987665421
Q ss_pred CeEEEEEcCCCCEEEEE------------------eCCCeEEEEcCCCCeeeEEEeCCCCcc-----cCe--EEEEEcCC
Q 022910 193 SVTCGDFTPDGKTICTG------------------SDDATLRVWNPKSGENIHVIRGHPYHT-----EGL--TCLTISAD 247 (290)
Q Consensus 193 ~i~~~~~~~~~~~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~v--~~~~~~~~ 247 (290)
...+..+| ..++++ ..+|.|.-+|+.+++.+.......... .+. ..+.. .
T Consensus 331 -~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~ 405 (488)
T cd00216 331 -EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--A 405 (488)
T ss_pred -ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--c
Confidence 11233444 333332 246789999999999877665421000 111 11222 4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcEEEEEcc
Q 022910 248 STLALSGSKDGSVHMVNITTGKVVSSLVS 276 (290)
Q Consensus 248 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 276 (290)
+.+|++++.||.|+.+|..+|+.+.+++.
T Consensus 406 g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 406 GNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 67888999999999999999999988764
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.41 E-value=6.6e-05 Score=64.18 Aligned_cols=191 Identities=13% Similarity=0.110 Sum_probs=100.5
Q ss_pred CCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC
Q 022910 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (290)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 129 (290)
.+...-..+.+....-....+.++| .++.++++ .+|...||.....+... .+.-....|.+.+ .+|+-...+
T Consensus 18 g~~~~l~~k~lg~~~~~p~~ls~np-ngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~ 89 (443)
T PF04053_consen 18 GERLPLSVKELGSCEIYPQSLSHNP-NGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSS 89 (443)
T ss_dssp TS-B----EEEEE-SS--SEEEE-T-TSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS
T ss_pred CceeeEEeccCCCCCcCCeeEEECC-CCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCC
Confidence 3344455566666666788999999 66666664 46888888844433322 2234567898844 566666688
Q ss_pred cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEE
Q 022910 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (290)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 209 (290)
+|.|+.--+.+....++.. ..+..|.. |.+|+..+. +.|.+||..+++.++++... +|..+.|++++.+++..
T Consensus 90 ~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~ 162 (443)
T PF04053_consen 90 TIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALV 162 (443)
T ss_dssp -EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE
T ss_pred eEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEE
Confidence 9999632233332333322 23444543 777777765 48999999999999998743 48999999999999988
Q ss_pred eCCCeEEEEcCCCC-----------eeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 022910 210 SDDATLRVWNPKSG-----------ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262 (290)
Q Consensus 210 ~~dg~i~i~d~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 262 (290)
+.+ .+.|++.... ..+..+.. ....|.+.+|..+ -++++. .. +|+.
T Consensus 163 t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E---~~~~IkSg~W~~d-~fiYtT-~~-~lkY 219 (443)
T PF04053_consen 163 TKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE---ISERIKSGCWVED-CFIYTT-SN-HLKY 219 (443)
T ss_dssp -S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE---E-S--SEEEEETT-EEEEE--TT-EEEE
T ss_pred eCC-eEEEEEecchhcccccccCchhceEEEEE---ecceeEEEEEEcC-EEEEEc-CC-eEEE
Confidence 765 5777764322 02233321 2456777888755 333333 33 5554
No 351
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=1.7e-05 Score=66.69 Aligned_cols=139 Identities=18% Similarity=0.216 Sum_probs=97.1
Q ss_pred EEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCC-------EEEEEeCCCcEEEEcCCCCce--EEEEecC-
Q 022910 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-------LLASGGLDGLVQIWDPSSGNL--KCTLEGP- 148 (290)
Q Consensus 79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~--~~~~~~~- 148 (290)
+|.++.....++-.|++.|+.+...+-+.. |.-+.+.|+.+ .-+.|-.+..|.-||.+-... +.....|
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 344555566788889999999998886665 77788888654 233455678899999874322 2222222
Q ss_pred ---CCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC
Q 022910 149 ---GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (290)
Q Consensus 149 ---~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 220 (290)
.....|.+-..+ .++++|+.+|.|++||--..+....+.+.+.+|..+..+.+|++|++.+.. .|.+.++
T Consensus 427 y~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 427 YSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT-YLLLIDT 499 (644)
T ss_pred cccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc-EEEEEEE
Confidence 223555555444 489999999999999974445556678889999999999999998877644 4555554
No 352
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.40 E-value=0.00057 Score=55.50 Aligned_cols=198 Identities=13% Similarity=0.082 Sum_probs=118.2
Q ss_pred EEECCCCCcEEEEe--cCCCcEEEEEccCCeeeeeeccccCCEEEEEECCC-CCEEEEEeCCCcEEEEcCC-CCceEEEE
Q 022910 70 VACSPTDATLVATG--GGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPS-SGNLKCTL 145 (290)
Q Consensus 70 ~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~-~~~~~~~~ 145 (290)
++++. ++++++.. +-.-.|.|-|+...+.+..+.- .++ ..+ .|. .+.|.+.+.||.+.-..+. .|+.....
T Consensus 100 ~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC-~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 100 FALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGC-WLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp EEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSE-EEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred eEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCE-EEE--EecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 45666 44444332 3334678888888887776652 222 222 232 2457788889999988887 45554322
Q ss_pred e----cCCCCEE-EEEEcCCCCEEEEeeCCCeEEEEECCcccEE--Eeeec----------CCCCeEEEEEcCCCCEEEE
Q 022910 146 E----GPGGGVE-WVSWHPRGHIVLAGSEDSTVWMWNADRAAYL--NMFSG----------HGSSVTCGDFTPDGKTICT 208 (290)
Q Consensus 146 ~----~~~~~i~-~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~----------~~~~i~~~~~~~~~~~l~~ 208 (290)
. ....++. .-++...+..++..+..|.|+-.|+...... ..+.. ..+.-.-+++++..+.|++
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 1 1112222 2334445556666788899999998765422 22211 1233455778876666655
Q ss_pred EeC---CC-------eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCC-EEEEE-eCCCcEEEEEcCCCcEEEEEcc
Q 022910 209 GSD---DA-------TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSG-SKDGSVHMVNITTGKVVSSLVS 276 (290)
Q Consensus 209 ~~~---dg-------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg~i~~wd~~~~~~~~~~~~ 276 (290)
--. .| .|-+||+.+++.+..+.. ..++.+|..+.+.+ +|++. ..++.|.+||..+|++++++..
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 321 11 488889999999988873 45677899998654 66554 4578999999999999999985
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.37 E-value=0.00035 Score=57.82 Aligned_cols=181 Identities=18% Similarity=0.204 Sum_probs=107.9
Q ss_pred CcEEEEecC----------CCcEEEEEccCC-----eeeee-eccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc
Q 022910 77 ATLVATGGG----------DDKGFFWRINQG-----DWASE-IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN 140 (290)
Q Consensus 77 ~~~l~~~~~----------dg~i~iw~~~~~-----~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 140 (290)
..+|++|+. .|.|.++++... +.... -....++|++++-. ++ +|+++. .+.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence 567777643 289999999884 22211 12357889998876 34 455444 4889999998887
Q ss_pred -eEEEEec-CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCc-ccEEEee--ecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910 141 -LKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-AAYLNMF--SGHGSSVTCGDFTPDGKTICTGSDDATL 215 (290)
Q Consensus 141 -~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i 215 (290)
....... ....+.++... ++++++|..-..+.++..+. ...+..+ ......++++.|.++++.++++..+|.|
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl 196 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL 196 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence 4433322 22356666654 66999999888888775443 2212222 2245668888898666799999999999
Q ss_pred EEEcCCC-------Ce-eeEEEeCCCCcccCeEEE---EEcCC--C------CEEEEEeCCCcEEEE
Q 022910 216 RVWNPKS-------GE-NIHVIRGHPYHTEGLTCL---TISAD--S------TLALSGSKDGSVHMV 263 (290)
Q Consensus 216 ~i~d~~~-------~~-~~~~~~~~~~~~~~v~~~---~~~~~--~------~~l~~~~~dg~i~~w 263 (290)
.++.... +. .+....... ....|+++ ++.|. + ..++.++.+|.|.+.
T Consensus 197 ~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 197 FVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9987652 22 222222221 45567777 54551 2 247788889988743
No 354
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.37 E-value=9.1e-05 Score=61.29 Aligned_cols=174 Identities=11% Similarity=0.140 Sum_probs=106.9
Q ss_pred CcEEEEEccCCeeeeeeccc-cCCEEE---EEECCC----CCEEEEEeC----------CCcEEEEcCCCC----ceEEE
Q 022910 87 DKGFFWRINQGDWASEIQGH-KDSVSS---LAFSMD----GQLLASGGL----------DGLVQIWDPSSG----NLKCT 144 (290)
Q Consensus 87 g~i~iw~~~~~~~~~~~~~~-~~~i~~---~~~~~~----~~~l~~~~~----------dg~i~i~d~~~~----~~~~~ 144 (290)
..|++.|..+.+.+..+.-. ...+.+ +.+..+ ..+|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35788888777766554421 223343 334332 457777753 289999999884 12221
Q ss_pred E--ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc-EEEeeec-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC
Q 022910 145 L--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSG-HGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (290)
Q Consensus 145 ~--~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 220 (290)
+ ....++|++++-- .+. |+++. .+.|.+|++...+ ....-.. ....+.++... ++++++|..-..|.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 1 2246789988876 444 44444 3789999998777 4433221 33466666654 669999998888887744
Q ss_pred CC-CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910 221 KS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (290)
Q Consensus 221 ~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 266 (290)
.. ...+..+.... ....++++.|-+++..++++..+|.|.++...
T Consensus 157 ~~~~~~l~~va~d~-~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 157 DEENNKLILVARDY-QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ETTTE-EEEEEEES-S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EccCCEEEEEEecC-CCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 33 33333443221 45568888888666799999999999999876
No 355
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=3.2e-06 Score=72.17 Aligned_cols=95 Identities=20% Similarity=0.250 Sum_probs=79.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeE-EEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 022910 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT-CLTISADSTLALSGSKDGSVHMVNITTG 268 (290)
Q Consensus 190 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 268 (290)
....+..+.|+|.-.++|++..+|.|.+..+. .+.+.++.. +...++ +++|.|||++||+|-.||+|++.|+.++
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~---p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI---PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC---CCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 34568889999999999999999999999887 677777775 445555 9999999999999999999999999999
Q ss_pred cEEEEEc-cCCCcEEEEEEec
Q 022910 269 KVVSSLV-SHTDSIECIGFSR 288 (290)
Q Consensus 269 ~~~~~~~-~~~~~v~~i~~s~ 288 (290)
..+..+. .....|+++-|+|
T Consensus 95 ~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 95 GRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred Cceeccccccccchheeeccc
Confidence 8887732 2356888888864
No 356
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.33 E-value=0.00014 Score=61.40 Aligned_cols=201 Identities=13% Similarity=0.102 Sum_probs=113.7
Q ss_pred CCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee--cc------ccCCEEEEEECC-----CC-
Q 022910 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI--QG------HKDSVSSLAFSM-----DG- 119 (290)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~------~~~~i~~~~~~~-----~~- 119 (290)
-.|...+...+++|++++.+. =-++|.|..+|.+.|.|++....+..- .. ....|+++.|.. ++
T Consensus 76 f~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 76 FLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred cCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 456677777899999999984 348889999999999999887766652 12 234688888862 22
Q ss_pred --CEEEEEeCCCcEEEEcCC--C-CceE----EEEecCCCCEEEEE-EcCC--------------------CCEEEEeeC
Q 022910 120 --QLLASGGLDGLVQIWDPS--S-GNLK----CTLEGPGGGVEWVS-WHPR--------------------GHIVLAGSE 169 (290)
Q Consensus 120 --~~l~~~~~dg~i~i~d~~--~-~~~~----~~~~~~~~~i~~i~-~~~~--------------------~~~l~~~~~ 169 (290)
-.+++|+..|.+.+|.+. . +... .....+.++|..|. ++.+ -+-+++...
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 278899999999999874 1 2111 11123445555554 3221 023444455
Q ss_pred CCeEEEEECCcccEEEeeecCCCCeEEEEEc-----CCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC-CcccCeEEEE
Q 022910 170 DSTVWMWNADRAAYLNMFSGHGSSVTCGDFT-----PDGKTICTGSDDATLRVWNPKSGENIHVIRGHP-YHTEGLTCLT 243 (290)
Q Consensus 170 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~ 243 (290)
...++++..-+.+...+..........+.+- ..+..|++-..+|.|++|.+-..+.+..+.... .....+....
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 6889999998877665554332333444453 256678888999999999999888877776532 1222344566
Q ss_pred EcCCCCEEEEEeC
Q 022910 244 ISADSTLALSGSK 256 (290)
Q Consensus 244 ~~~~~~~l~~~~~ 256 (290)
++++|..++..+.
T Consensus 314 is~~Gdi~~~~gp 326 (395)
T PF08596_consen 314 ISRNGDIFYWTGP 326 (395)
T ss_dssp E-TTS-EEEE-SS
T ss_pred ECCCCCEEEEeCc
Confidence 7888887766654
No 357
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.32 E-value=0.00023 Score=59.72 Aligned_cols=227 Identities=17% Similarity=0.196 Sum_probs=122.9
Q ss_pred eeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee-cc---------------c-cCCEEEEEECCCCC
Q 022910 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-QG---------------H-KDSVSSLAFSMDGQ 120 (290)
Q Consensus 58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~---------------~-~~~i~~~~~~~~~~ 120 (290)
..+......+....|+| +++.+|... ++.|.+++..++.....- .+ - -+.-..+-|||+++
T Consensus 36 ~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~ 113 (353)
T PF00930_consen 36 TPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK 113 (353)
T ss_dssp EESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS
T ss_pred EECcCCccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCC
Confidence 33333366788999999 566665554 578999988776433221 11 0 11235688999999
Q ss_pred EEEEEeCC-C-----------------------------------cEEEEcCCCCceEE-EE----ecCCCCEEEEEEcC
Q 022910 121 LLASGGLD-G-----------------------------------LVQIWDPSSGNLKC-TL----EGPGGGVEWVSWHP 159 (290)
Q Consensus 121 ~l~~~~~d-g-----------------------------------~i~i~d~~~~~~~~-~~----~~~~~~i~~i~~~~ 159 (290)
+||....| . .+.|+++.+++... .. ......+..+.|.+
T Consensus 114 ~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~ 193 (353)
T PF00930_consen 114 YLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP 193 (353)
T ss_dssp EEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE
T ss_pred EEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC
Confidence 98876432 1 13344554444321 11 12234577888998
Q ss_pred CCCEEEEeeC-----CCeEEEEECCcccEEEeeec-CCCCe---EEEEEc-CCCC-EEEEEeCCC--eEEEEcCCCCeee
Q 022910 160 RGHIVLAGSE-----DSTVWMWNADRAAYLNMFSG-HGSSV---TCGDFT-PDGK-TICTGSDDA--TLRVWNPKSGENI 226 (290)
Q Consensus 160 ~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~-~~~~i---~~~~~~-~~~~-~l~~~~~dg--~i~i~d~~~~~~~ 226 (290)
++..|+..-. ...+.++|..++........ ....| ..+.|. +++. +|.....+| +|.+++...+...
T Consensus 194 d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~ 273 (353)
T PF00930_consen 194 DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR 273 (353)
T ss_dssp TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE
T ss_pred CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee
Confidence 8884444322 22477778776643322221 12222 244454 5554 455555666 4666677666533
Q ss_pred EEEeCCCCcccCeE-EEEEcCCCCEE-EEEeCC----CcEEEEEcCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 227 HVIRGHPYHTEGLT-CLTISADSTLA-LSGSKD----GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 227 ~~~~~~~~~~~~v~-~~~~~~~~~~l-~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
.+.. ..-.|+ .+.|+++++.| +++..+ ..|+..++..+..+..+....+.-..+.|||+|
T Consensus 274 -~lT~---G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg 339 (353)
T PF00930_consen 274 -QLTS---GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDG 339 (353)
T ss_dssp -ESS----SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTS
T ss_pred -cccc---CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCC
Confidence 3332 344564 46778876544 455543 356666776345566666544433799999986
No 358
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=4.1e-06 Score=71.59 Aligned_cols=95 Identities=22% Similarity=0.285 Sum_probs=80.6
Q ss_pred CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEE-EEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 022910 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVS-SLAFSMDGQLLASGGLDGLVQIWDPSSGNL 141 (290)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 141 (290)
-.-.|.-+.|+| ...++|++..+|.|.+..++ .+.+.++.-|...++ +++|.|+|+.||+|-.||+|++.|+.++..
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 345678899999 88899999999999999998 777888886777777 999999999999999999999999999988
Q ss_pred EEEEe-cCCCCEEEEEEcC
Q 022910 142 KCTLE-GPGGGVEWVSWHP 159 (290)
Q Consensus 142 ~~~~~-~~~~~i~~i~~~~ 159 (290)
+..+. .....|.++.|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 77632 2445688888864
No 359
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.32 E-value=1.5e-05 Score=69.08 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=90.1
Q ss_pred CEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEe-eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeee---
Q 022910 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI--- 226 (290)
Q Consensus 151 ~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--- 226 (290)
.+.--+++..+++++.|+.-|.+++|+-..++.... ..+..+.+..+.+++...++|+|+..|.|.++-+....+.
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 344455666789999999999999999766653322 2234556677788888889999999999999988764432
Q ss_pred EEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910 227 HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 267 (290)
..-..+..|...|++++|++++..|++|...|+|.+-.+.+
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 22233334788999999999999999999999999988877
No 360
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.31 E-value=0.0017 Score=55.83 Aligned_cols=215 Identities=15% Similarity=0.143 Sum_probs=117.4
Q ss_pred CEEEEEECCCCCcEEEEecCCC----cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCC-----------c
Q 022910 66 EVYSVACSPTDATLVATGGGDD----KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG-----------L 130 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------~ 130 (290)
.+...+++|++..++++-+..| .++++|+.+++.+...-.... ...+.|.++++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 4446789994444444434444 599999999977653321111 22399999988766654333 3
Q ss_pred EEEEcCCCCceE--EEEecCCCC--EEEEEEcCCCCEEEEeeC---C-CeEEEEECCcc-----cEEEeeecCCCCeEEE
Q 022910 131 VQIWDPSSGNLK--CTLEGPGGG--VEWVSWHPRGHIVLAGSE---D-STVWMWNADRA-----AYLNMFSGHGSSVTCG 197 (290)
Q Consensus 131 i~i~d~~~~~~~--~~~~~~~~~--i~~i~~~~~~~~l~~~~~---d-g~i~i~d~~~~-----~~~~~~~~~~~~i~~~ 197 (290)
|+.|.+.+.... ..+...... ...+..++++++|+.... + ..+++.++... ..........+....+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 788888776432 445443332 567889999998776443 2 45888888874 3333333233333444
Q ss_pred EEcCCCCEEEEEe---CCCeEEEEcCCCCee--eE-EEeCCCCccc--CeEEEEEcCCCCEEEEEeCCC--cEEEEEcCC
Q 022910 198 DFTPDGKTICTGS---DDATLRVWNPKSGEN--IH-VIRGHPYHTE--GLTCLTISADSTLALSGSKDG--SVHMVNITT 267 (290)
Q Consensus 198 ~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~-~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg--~i~~wd~~~ 267 (290)
... .+.+++... ..+.|...++.+... .. .+.. +.. .+..+... .+.+++....++ .|+++++..
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~~~ 358 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP---EDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDLDD 358 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEETT-
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC---CCCceeEEEEEEE-CCEEEEEEEECCccEEEEEECCC
Confidence 443 343444332 246777788877653 22 3332 233 45555543 233444444444 689999984
Q ss_pred CcEEEEEcc-CCCcEEEEEE
Q 022910 268 GKVVSSLVS-HTDSIECIGF 286 (290)
Q Consensus 268 ~~~~~~~~~-~~~~v~~i~~ 286 (290)
+.....+.. -.+.|..+..
T Consensus 359 ~~~~~~~~~p~~g~v~~~~~ 378 (414)
T PF02897_consen 359 GKESREIPLPEAGSVSGVSG 378 (414)
T ss_dssp TEEEEEEESSSSSEEEEEES
T ss_pred CcEEeeecCCcceEEeccCC
Confidence 444444443 2344555543
No 361
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.28 E-value=0.0013 Score=53.17 Aligned_cols=142 Identities=17% Similarity=0.222 Sum_probs=86.6
Q ss_pred CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE----------
Q 022910 76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL---------- 145 (290)
Q Consensus 76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------- 145 (290)
.+..|+.|+.+| +.++++........+. +..+|..+...|.-+.+++-+ |+.|+++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 456778888888 8999983332222222 233499999999888777765 599999998765443311
Q ss_pred ----ecCCCCEEEEE--EcCCCCEEEEeeCCCeEEEEECCcc-----cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCe
Q 022910 146 ----EGPGGGVEWVS--WHPRGHIVLAGSEDSTVWMWNADRA-----AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (290)
Q Consensus 146 ----~~~~~~i~~i~--~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 214 (290)
......+...+ -...+...++......|.+|..... +..+.+. ....+..++|. ++.++.|..++
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~- 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG- 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-
Confidence 01122344444 1123333333444458888876542 3455554 45778899998 55677776554
Q ss_pred EEEEcCCCCe
Q 022910 215 LRVWNPKSGE 224 (290)
Q Consensus 215 i~i~d~~~~~ 224 (290)
..+.|+.++.
T Consensus 159 f~~idl~~~~ 168 (275)
T PF00780_consen 159 FYLIDLNTGS 168 (275)
T ss_pred eEEEecCCCC
Confidence 6677776543
No 362
>PHA02713 hypothetical protein; Provisional
Probab=98.26 E-value=7.7e-05 Score=66.24 Aligned_cols=195 Identities=12% Similarity=0.109 Sum_probs=102.6
Q ss_pred CCcEEEEecCC------CcEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCCC-----cEEEEcCCCCceE
Q 022910 76 DATLVATGGGD------DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLDG-----LVQIWDPSSGNLK 142 (290)
Q Consensus 76 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~ 142 (290)
++.+++.|+.+ ..+..||..+...... +.........+.+ +++..+.|+.++ .+..||..+.+..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 45677777753 3477888777654322 2211122222222 677777777653 4788998876543
Q ss_pred EE--EecCCCCEEEEEEcCCCCEEEEeeCCC-----------------------eEEEEECCcccEEE--eeecCCCCeE
Q 022910 143 CT--LEGPGGGVEWVSWHPRGHIVLAGSEDS-----------------------TVWMWNADRAAYLN--MFSGHGSSVT 195 (290)
Q Consensus 143 ~~--~~~~~~~i~~i~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~--~~~~~~~~i~ 195 (290)
.. +.........+.+ ++.+.+.|+.++ .+..||..+.+-.. .+........
T Consensus 381 ~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~ 458 (557)
T PHA02713 381 MLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG 458 (557)
T ss_pred ECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence 21 1111111122222 677777777542 47778877664322 2211111111
Q ss_pred EEEEcCCCCEEEEEeCC------CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCC
Q 022910 196 CGDFTPDGKTICTGSDD------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG--SVHMVNITT 267 (290)
Q Consensus 196 ~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~wd~~~ 267 (290)
.+.+ ++++.++|+.+ ..+..||..+......+...+........+.+ ++++.++|+.+| .+-.||..+
T Consensus 459 ~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 459 VVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred EEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence 2222 46666777654 24678998872222222222212223333333 688999999888 788888877
Q ss_pred CcEEEEEccCC
Q 022910 268 GKVVSSLVSHT 278 (290)
Q Consensus 268 ~~~~~~~~~~~ 278 (290)
.+=-.....|.
T Consensus 535 ~~W~~~~~~~~ 545 (557)
T PHA02713 535 YEWNHICHQHS 545 (557)
T ss_pred ccccchhhhcC
Confidence 65433333343
No 363
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.19 E-value=0.0022 Score=52.17 Aligned_cols=217 Identities=16% Similarity=0.128 Sum_probs=130.6
Q ss_pred EEEECCCCCcEEEEec----------CCCcEEEEEccCCeeeeeeccccC-------CEEEEEECCCCCEEEEE--eCCC
Q 022910 69 SVACSPTDATLVATGG----------GDDKGFFWRINQGDWASEIQGHKD-------SVSSLAFSMDGQLLASG--GLDG 129 (290)
Q Consensus 69 ~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~--~~dg 129 (290)
.+..+| +++.+++++ ..-.|.+||..+......+.-... ....++++.+++++++. +-..
T Consensus 40 ~~~~sp-dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 40 NVALSP-DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEE-T-TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred ceeECC-CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 356788 555555432 234699999999877664432111 12345778899987775 3456
Q ss_pred cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECC-cccEEEee----ecCCCCeE-EEEEcCCC
Q 022910 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD-RAAYLNMF----SGHGSSVT-CGDFTPDG 203 (290)
Q Consensus 130 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~----~~~~~~i~-~~~~~~~~ 203 (290)
+|.|.|+..++.+..+..+. ...+--++ ..-|.+-+.||.+.-..+. .++..++. .....++. .-++...+
T Consensus 119 SVtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred eEEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence 79999999999988887654 22222222 2458888889999999887 45443222 22222332 22344455
Q ss_pred CEEEEEeCCCeEEEEcCCCCeee--EEEeCC-------CCcccCeEEEEEcCCCCEEEEEeC---CC-------cEEEEE
Q 022910 204 KTICTGSDDATLRVWNPKSGENI--HVIRGH-------PYHTEGLTCLTISADSTLALSGSK---DG-------SVHMVN 264 (290)
Q Consensus 204 ~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~---dg-------~i~~wd 264 (290)
..++--+..|.|+-.|+...... ..+... ....+...-+++++..+.|++--. +| .|.++|
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 55655778999999888755422 122111 112344556788875555554321 21 599999
Q ss_pred cCCCcEEEEEccCCCcEEEEEEecCC
Q 022910 265 ITTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 265 ~~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
+.+++.+.++.. ..++.+|+.+.++
T Consensus 276 ~~t~krv~Ri~l-~~~~~Si~Vsqd~ 300 (342)
T PF06433_consen 276 LKTHKRVARIPL-EHPIDSIAVSQDD 300 (342)
T ss_dssp TTTTEEEEEEEE-EEEESEEEEESSS
T ss_pred CCCCeEEEEEeC-CCccceEEEccCC
Confidence 999999999985 3568888887653
No 364
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.16 E-value=0.00048 Score=61.29 Aligned_cols=188 Identities=14% Similarity=0.156 Sum_probs=102.3
Q ss_pred cCEEEEEECCCCCcEEEEec-----CCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC-----------
Q 022910 65 DEVYSVACSPTDATLVATGG-----GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD----------- 128 (290)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------- 128 (290)
..+...+++|++....++.. .+..-.||-...+.....+.. ....+.-.|+|+|+.|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 36778899995555544442 244444554332222233321 2237888999998877776532
Q ss_pred -CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEE---EECCccc-EE---Eeee-cCCCCeEEEEE
Q 022910 129 -GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM---WNADRAA-YL---NMFS-GHGSSVTCGDF 199 (290)
Q Consensus 129 -g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i---~d~~~~~-~~---~~~~-~~~~~i~~~~~ 199 (290)
+.+.+..+..+.... ...+.|..+.|+|+|..++... +|.|++ -....+. .+ ..+. .....+..+.|
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 233333443333222 2345799999999999888766 477777 4433443 11 1122 23334688999
Q ss_pred cCCCCEEEEEeCCCeEEEEcCCC-CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 022910 200 TPDGKTICTGSDDATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (290)
Q Consensus 200 ~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 261 (290)
.+++.++ ++..++.-.+|.+.- +.....+.. .....++..++-++. .|+....+|.+.
T Consensus 505 ~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~-~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 505 RTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPS-RNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ecCCEEE-EEecCCCCceEEEecCCccccccCC-CCccCceEEEecCCc--eEEEEcCCceEE
Confidence 9988754 555544444444321 222122122 113456777777763 455566666443
No 365
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.15 E-value=0.00066 Score=45.60 Aligned_cols=100 Identities=15% Similarity=0.221 Sum_probs=70.2
Q ss_pred EEEEEEcC---C-CCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeE
Q 022910 152 VEWVSWHP---R-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227 (290)
Q Consensus 152 i~~i~~~~---~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 227 (290)
|++|++.. + .+.|++|+.|..|++|+-. ..+..+.. ...|++++-... ..|+.+..+|+|-+|+.. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 55666554 3 2589999999999999743 55666663 456777776655 678999999999999863 4445
Q ss_pred EEeCCCCcccCeEEEEEcC-C--C-CEEEEEeCCCcEE
Q 022910 228 VIRGHPYHTEGLTCLTISA-D--S-TLALSGSKDGSVH 261 (290)
Q Consensus 228 ~~~~~~~~~~~v~~~~~~~-~--~-~~l~~~~~dg~i~ 261 (290)
.++. +..++++++.. + | .-|++|-.+|.|-
T Consensus 76 RiKS----K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS----KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc----CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 5553 44467776654 2 2 3688898898874
No 366
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.00025 Score=59.87 Aligned_cols=143 Identities=15% Similarity=0.235 Sum_probs=91.7
Q ss_pred CCCCEEE-EEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCC-------EEEEeeCCCeEEEEECCccc-EEEee
Q 022910 117 MDGQLLA-SGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-------IVLAGSEDSTVWMWNADRAA-YLNMF 187 (290)
Q Consensus 117 ~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-------~l~~~~~dg~i~i~d~~~~~-~~~~~ 187 (290)
.+.++|+ .+..-..++-.|++.|+.+..+..+... -+.|.|..+ .-++|-.+..|.-.|.+-.. .+...
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 3444444 4555677888999999999999877763 577777432 33445555666666655322 22211
Q ss_pred ecCCCCeEEEEEcC----CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 022910 188 SGHGSSVTCGDFTP----DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV 263 (290)
Q Consensus 188 ~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 263 (290)
. ....++.-.|+. ...++++++..|.|++||.-.-+....+++ ....|..+..+.+|.++++.+.. .+.+-
T Consensus 555 e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~---lG~aIk~idvta~Gk~ilaTCk~-yllL~ 629 (776)
T COG5167 555 E-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPG---LGDAIKHIDVTANGKHILATCKN-YLLLT 629 (776)
T ss_pred e-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcc---cccceeeeEeecCCcEEEEeecc-eEEEE
Confidence 1 112222222332 456899999999999999754443344444 67789999999999998877754 67777
Q ss_pred EcC
Q 022910 264 NIT 266 (290)
Q Consensus 264 d~~ 266 (290)
|++
T Consensus 630 d~~ 632 (776)
T COG5167 630 DVP 632 (776)
T ss_pred ecc
Confidence 764
No 367
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.13 E-value=0.0042 Score=53.15 Aligned_cols=183 Identities=10% Similarity=0.047 Sum_probs=94.6
Q ss_pred CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeee-------ccccCCEEEEEECCCCCEEEEEeC
Q 022910 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-------QGHKDSVSSLAFSMDGQLLASGGL 127 (290)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~ 127 (290)
..+..+.--.+.|.++.|+. +..++ +-..+|.+++|++.... ...+ ......+....+..+| ++.-..
T Consensus 71 ~ll~~i~w~~~~iv~~~wt~-~e~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~ 145 (410)
T PF04841_consen 71 KLLSSIPWDSGRIVGMGWTD-DEELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTG 145 (410)
T ss_pred CEeEEEEECCCCEEEEEECC-CCeEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC--EEEECC
Confidence 33333333347888888887 55555 44579999999986433 1111 1112223333333344 333334
Q ss_pred CCcEEEEcCCCCc-eEEEEecCCC---------CEEE-EEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEE
Q 022910 128 DGLVQIWDPSSGN-LKCTLEGPGG---------GVEW-VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC 196 (290)
Q Consensus 128 dg~i~i~d~~~~~-~~~~~~~~~~---------~i~~-i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 196 (290)
++.+.+..-.... ....+..... .... ..++.+....+....++.+.+.+-...+. +. ..+++..
T Consensus 146 ~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~ 221 (410)
T PF04841_consen 146 NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIK 221 (410)
T ss_pred CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEE
Confidence 4555544322211 1111110000 0000 22333444444444555555444322211 21 2468999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCC
Q 022910 197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS 248 (290)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 248 (290)
|++||++++++.-..+|.+.+....-.+....+... .......|.|+-+.
T Consensus 222 iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~--~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 222 IAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD--SKSPPKQMAWCGND 271 (410)
T ss_pred EEECCCCCEEEEEECCCCEEEEECcccceeEEeecC--cCCCCcEEEEECCC
Confidence 999999999999999999999876555554444432 23455677776543
No 368
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.11 E-value=0.0043 Score=54.87 Aligned_cols=188 Identities=10% Similarity=0.179 Sum_probs=115.2
Q ss_pred CCcEEEEEccCCeeeeeecccc-------------------------------CCEE-EEEECCCCCEEEEEeCC-----
Q 022910 86 DDKGFFWRINQGDWASEIQGHK-------------------------------DSVS-SLAFSMDGQLLASGGLD----- 128 (290)
Q Consensus 86 dg~i~iw~~~~~~~~~~~~~~~-------------------------------~~i~-~~~~~~~~~~l~~~~~d----- 128 (290)
+|.|..+|..+++.+..+..-. ..+. .+.+.|...+++.+...
T Consensus 180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~ 259 (527)
T TIGR03075 180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN 259 (527)
T ss_pred CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence 6889999999988776543210 0111 23556666666665421
Q ss_pred C-----------cEEEEcCCCCceEEEEecCCCCE---------EEEEEcCCCC---EEEEeeCCCeEEEEECCcccEEE
Q 022910 129 G-----------LVQIWDPSSGNLKCTLEGPGGGV---------EWVSWHPRGH---IVLAGSEDSTVWMWNADRAAYLN 185 (290)
Q Consensus 129 g-----------~i~i~d~~~~~~~~~~~~~~~~i---------~~i~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~ 185 (290)
+ +|.-.|+++|+..-.++.....+ .-+.+..+|+ .++.+..+|.+++.|-++++.+.
T Consensus 260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 2 67788999999887766422211 2223334565 78899999999999999998752
Q ss_pred e--------e----ecCC-CCe----------------------------EEEEEcCCCCEEEEEeCC------------
Q 022910 186 M--------F----SGHG-SSV----------------------------TCGDFTPDGKTICTGSDD------------ 212 (290)
Q Consensus 186 ~--------~----~~~~-~~i----------------------------~~~~~~~~~~~l~~~~~d------------ 212 (290)
. + .... .++ ..++++|...++++...+
T Consensus 340 ~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~ 419 (527)
T TIGR03075 340 AEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSY 419 (527)
T ss_pred cccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEeccccccccccccccc
Confidence 1 1 0000 000 125566655555543322
Q ss_pred ---------------------CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 022910 213 ---------------------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271 (290)
Q Consensus 213 ---------------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 271 (290)
|.|.-+|+.+++......... ....+. +.-.+.+++.++.+|.++.+|.++|+.+
T Consensus 420 ~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~---p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~l 495 (527)
T TIGR03075 420 KKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDF---PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEEL 495 (527)
T ss_pred CCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCC---CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEe
Confidence 457778888887766655321 111111 1114557778888999999999999999
Q ss_pred EEEccC
Q 022910 272 SSLVSH 277 (290)
Q Consensus 272 ~~~~~~ 277 (290)
.++...
T Consensus 496 w~~~~g 501 (527)
T TIGR03075 496 WKFKTG 501 (527)
T ss_pred EEEeCC
Confidence 988753
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.11 E-value=0.00056 Score=60.86 Aligned_cols=147 Identities=13% Similarity=0.093 Sum_probs=88.3
Q ss_pred CCEEEEEECCCCCEEEEEe------CCC--cEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCC---------
Q 022910 108 DSVSSLAFSMDGQLLASGG------LDG--LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED--------- 170 (290)
Q Consensus 108 ~~i~~~~~~~~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--------- 170 (290)
..+...+++|+|+.++... .++ .|.+++.. +.. ..+... ...+.-.|+|+|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999877765 243 45555542 222 333222 237889999998877776532
Q ss_pred ---CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEE---EcCCCCeeeEE-----EeCCCCcccCe
Q 022910 171 ---STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV---WNPKSGENIHV-----IRGHPYHTEGL 239 (290)
Q Consensus 171 ---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~~-----~~~~~~~~~~v 239 (290)
+.+.+..+..+.... .....|..+.|||+|..++... +|.|++ -....+. ... +.. .....+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~--~l~~~~ 499 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGP--GLGDTA 499 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeec--ccCCcc
Confidence 234444444433222 2356799999999999988765 477777 4434443 111 111 123346
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910 240 TCLTISADSTLALSGSKDGSVHMVNI 265 (290)
Q Consensus 240 ~~~~~~~~~~~l~~~~~dg~i~~wd~ 265 (290)
..+.|.+++.++ ++..++...+|.+
T Consensus 500 ~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 500 VSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred ccceEecCCEEE-EEecCCCCceEEE
Confidence 889999988855 5555444444543
No 370
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.09 E-value=0.0029 Score=51.56 Aligned_cols=165 Identities=13% Similarity=0.085 Sum_probs=103.9
Q ss_pred CcEEEEEccCCeeeeeec-----cccCCEEEEEECCCCCEEEEEeC-----------CCcEEEEcCCCCceEEEEecCCC
Q 022910 87 DKGFFWRINQGDWASEIQ-----GHKDSVSSLAFSMDGQLLASGGL-----------DGLVQIWDPSSGNLKCTLEGPGG 150 (290)
Q Consensus 87 g~i~iw~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~ 150 (290)
.-+.+++..++..+..+. ......+.+...|+|.+.++... -|.|+.++. .+..+..+..+-.
T Consensus 85 ~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~ 163 (307)
T COG3386 85 HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT 163 (307)
T ss_pred cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE
Confidence 346677766555422221 11245567888899886665443 143444443 4555555555455
Q ss_pred CEEEEEEcCCCCEEEEeeC-CCeEEEEECCc--c----c-EEEeeecCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEcCC
Q 022910 151 GVEWVSWHPRGHIVLAGSE-DSTVWMWNADR--A----A-YLNMFSGHGSSVTCGDFTPDGKTICTGSDDA-TLRVWNPK 221 (290)
Q Consensus 151 ~i~~i~~~~~~~~l~~~~~-dg~i~i~d~~~--~----~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~ 221 (290)
.-+.|+|||+++.|+.+.. .+.|..|++.. + + ....+....+..-.++...+|.+.+++...| .|.+|+..
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 5678999999988877766 47788888752 1 1 1222223445666778888888876555554 89999998
Q ss_pred CCeeeEEEeCCCCcccCeEEEEEc-CCCCEEEEEeC
Q 022910 222 SGENIHVIRGHPYHTEGLTCLTIS-ADSTLALSGSK 256 (290)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 256 (290)
++++..+.. ....+++++|- |+.+.|++.+.
T Consensus 244 -G~l~~~i~l---P~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 244 -GKLLGEIKL---PVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred -CcEEEEEEC---CCCCCccceEeCCCcCEEEEEec
Confidence 888888875 33667788885 34455554443
No 371
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.09 E-value=0.0046 Score=54.65 Aligned_cols=191 Identities=15% Similarity=0.203 Sum_probs=119.7
Q ss_pred EEEEecCCCcEEEEEccCCeeeeeecccc-CCEE---E-------EEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec
Q 022910 79 LVATGGGDDKGFFWRINQGDWASEIQGHK-DSVS---S-------LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG 147 (290)
Q Consensus 79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~i~---~-------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 147 (290)
.++.++.++.|+-+|..+++.+.++.... ..+. + +++ .+..++.++.++.|.-+|..+|+.+-....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 45566778899999999998887765211 1111 1 122 235677888899999999999998866543
Q ss_pred CCCC-EEEEEEcC--CCCEEEEeeC------CCeEEEEECCcccEEEeeecCCC--------------------------
Q 022910 148 PGGG-VEWVSWHP--RGHIVLAGSE------DSTVWMWNADRAAYLNMFSGHGS-------------------------- 192 (290)
Q Consensus 148 ~~~~-i~~i~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~-------------------------- 192 (290)
.... -..+.-+| .+..++++.. +|.|..+|.++++.+-++.....
T Consensus 149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~ 228 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAW 228 (527)
T ss_pred ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCcc
Confidence 2110 00111122 1234555432 68999999999987655432110
Q ss_pred -----Ce-EEEEEcCCCCEEEEEeCC-----C-----------eEEEEcCCCCeeeEEEeCCCCcc-------cCeEEEE
Q 022910 193 -----SV-TCGDFTPDGKTICTGSDD-----A-----------TLRVWNPKSGENIHVIRGHPYHT-------EGLTCLT 243 (290)
Q Consensus 193 -----~i-~~~~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~~~ 243 (290)
.+ ..+++.|...+++.+... + .|.-.|+++|+....++..+ |. ....-+.
T Consensus 229 ~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~-~D~wD~d~~~~p~l~d 307 (527)
T TIGR03075 229 KTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTP-HDEWDYDGVNEMILFD 307 (527)
T ss_pred ccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCC-CCCccccCCCCcEEEE
Confidence 11 134666666677766522 2 57778999999887776533 21 1122223
Q ss_pred EcCCCC---EEEEEeCCCcEEEEEcCCCcEEE
Q 022910 244 ISADST---LALSGSKDGSVHMVNITTGKVVS 272 (290)
Q Consensus 244 ~~~~~~---~l~~~~~dg~i~~wd~~~~~~~~ 272 (290)
+..+|+ .++.+..+|.+++.|..+|+++.
T Consensus 308 ~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 308 LKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred eccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 334665 78899999999999999999874
No 372
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.07 E-value=0.0011 Score=44.64 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=69.7
Q ss_pred EEEEEECC---CCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910 67 VYSVACSP---TDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (290)
Q Consensus 67 v~~~~~~~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 143 (290)
|++|++.. ++.+.|++|+.|..||+|+-. ..+..+. -...|+++.-... ..|+.+..+|+|-+|+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 56666554 355788899999999999754 5666666 4456777777655 56888999999999975 33344
Q ss_pred EEecCCCCEEEEEEcC-CC---CEEEEeeCCCeEE
Q 022910 144 TLEGPGGGVEWVSWHP-RG---HIVLAGSEDSTVW 174 (290)
Q Consensus 144 ~~~~~~~~i~~i~~~~-~~---~~l~~~~~dg~i~ 174 (290)
..+.... +.++++.. ++ ..|++|-.+|.|-
T Consensus 76 RiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4454333 56665543 22 2788998888874
No 373
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.00014 Score=66.17 Aligned_cols=96 Identities=20% Similarity=0.284 Sum_probs=73.9
Q ss_pred cEEEEecCCCcEEEEEccCC-eeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEE
Q 022910 78 TLVATGGGDDKGFFWRINQG-DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS 156 (290)
Q Consensus 78 ~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~ 156 (290)
..++.|+..|.+...|+... .+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..+++++.+..+..+.+.+-
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 45778888899988887653 22222233467999999999999999999999999999999999988887766555543
Q ss_pred ---EcCCCCEEEEeeCCCeE
Q 022910 157 ---WHPRGHIVLAGSEDSTV 173 (290)
Q Consensus 157 ---~~~~~~~l~~~~~dg~i 173 (290)
+..++..++++...|.+
T Consensus 180 ~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred EEEEeCCCcEEEEccCCCce
Confidence 44456678888888873
No 374
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.02 E-value=0.0023 Score=48.83 Aligned_cols=208 Identities=17% Similarity=0.208 Sum_probs=117.4
Q ss_pred CCcEEEEecCCCcEEEEEccCCeeee-eeccccCCEEEEEECCCC---CEEEEEeCCCcEEEEcCCCC--ceEEEEec--
Q 022910 76 DATLVATGGGDDKGFFWRINQGDWAS-EIQGHKDSVSSLAFSMDG---QLLASGGLDGLVQIWDPSSG--NLKCTLEG-- 147 (290)
Q Consensus 76 ~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~--~~~~~~~~-- 147 (290)
.+.++.+--..|.|.-||..+.+... .+.+. +..++.+--.+ .+.+.++..-.|.-||.... ....++..
T Consensus 26 ~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~ 103 (310)
T KOG4499|consen 26 RQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQ 103 (310)
T ss_pred cceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccC
Confidence 45566666666778889988755333 23222 23333342222 23333343334455663322 22222110
Q ss_pred ---CCCCEEEEEEcCCCCEEEEeeC---------CCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEE-EEeCCCe
Q 022910 148 ---PGGGVEWVSWHPRGHIVLAGSE---------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDDAT 214 (290)
Q Consensus 148 ---~~~~i~~i~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~ 214 (290)
.....+.-..+|+|++++-.-. .|.++.|-... .+..+...-.--..++|+.+.+.++ +-+.+-.
T Consensus 104 ~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 104 PDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYE 181 (310)
T ss_pred chHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceE
Confidence 1234566677899988432221 24455554321 1222222223336788987766654 5666778
Q ss_pred EEEEc--CCCCee-----eEEEeCCCC-cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccCCCcEEEEEE
Q 022910 215 LRVWN--PKSGEN-----IHVIRGHPY-HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF 286 (290)
Q Consensus 215 i~i~d--~~~~~~-----~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~ 286 (290)
|.-|| ..+|.. +..++.... .....-.++...+|.+.++.-..|+|...|..+|+.+..+.-....|++.+|
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 87776 555532 222322111 1112334566778888888888899999999999999999988999999998
Q ss_pred e
Q 022910 287 S 287 (290)
Q Consensus 287 s 287 (290)
-
T Consensus 262 g 262 (310)
T KOG4499|consen 262 G 262 (310)
T ss_pred c
Confidence 4
No 375
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.02 E-value=0.0022 Score=50.40 Aligned_cols=209 Identities=16% Similarity=0.188 Sum_probs=127.4
Q ss_pred CEEEEEECCCCCcEEEEecCCCc-EEEEEccCCeeeeeeccccCC--EEEEEECCCCCEEEEEeCC-----CcEEEEcCC
Q 022910 66 EVYSVACSPTDATLVATGGGDDK-GFFWRINQGDWASEIQGHKDS--VSSLAFSMDGQLLASGGLD-----GLVQIWDPS 137 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~ 137 (290)
.-..++|+|..+.-++.+..-|+ ..++|....+....+...++. --.-.|+|+|.+|+..-.| |.|-|||..
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 44578899977777887777775 578888887666555432222 1123589999999887543 789999987
Q ss_pred CC-ceEEEEecCCCCEEEEEEcCCCCEEEEeeCC------------------CeEEEEECCcccEEEeee----cCCCCe
Q 022910 138 SG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSED------------------STVWMWNADRAAYLNMFS----GHGSSV 194 (290)
Q Consensus 138 ~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------------------g~i~i~d~~~~~~~~~~~----~~~~~i 194 (290)
.+ +.+-.+..|.-....+.|.++|+.++.+... -.+.+.|..++..+.+.. .+.-.|
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 54 4566777787778899999999998886531 123333433443332221 234467
Q ss_pred EEEEEcCCCCEEEEEeCCCe-----EEEEcCCCCeeeEEEeCCC----CcccCeEEEEEcCCCCEE-EEEeCCCcEEEEE
Q 022910 195 TCGDFTPDGKTICTGSDDAT-----LRVWNPKSGENIHVIRGHP----YHTEGLTCLTISADSTLA-LSGSKDGSVHMVN 264 (290)
Q Consensus 195 ~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd 264 (290)
..++..++|+.++.+-..|. -.+=-...++.+..+...+ .....|-+++.+.+..++ +|+=..+...+||
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence 78888888776655433331 1111122333333333211 022346677777644444 4444455778999
Q ss_pred cCCCcEEEEE
Q 022910 265 ITTGKVVSSL 274 (290)
Q Consensus 265 ~~~~~~~~~~ 274 (290)
..+|.++..-
T Consensus 309 a~tG~vv~~a 318 (366)
T COG3490 309 AATGAVVSEA 318 (366)
T ss_pred cCCCcEEecc
Confidence 9999877643
No 376
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=98.01 E-value=0.011 Score=54.24 Aligned_cols=195 Identities=12% Similarity=0.165 Sum_probs=121.7
Q ss_pred EEEEecCCCcEEEEEccCCeeeeeeccccC--------CEEEEEECC----------------CCCEEEEEeCCCcEEEE
Q 022910 79 LVATGGGDDKGFFWRINQGDWASEIQGHKD--------SVSSLAFSM----------------DGQLLASGGLDGLVQIW 134 (290)
Q Consensus 79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------~i~~~~~~~----------------~~~~l~~~~~dg~i~i~ 134 (290)
.++.++.++.|.-.|..+++.+.++..... ..+.+.+.. .+..++.++.|+.|.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 555677789999999999998877653221 012233321 23478888999999999
Q ss_pred cCCCCceEEEEecCCCCE-------------EEEEEcC--CCCEEEEeeC----------CCeEEEEECCcccEEEeeec
Q 022910 135 DPSSGNLKCTLEGPGGGV-------------EWVSWHP--RGHIVLAGSE----------DSTVWMWNADRAAYLNMFSG 189 (290)
Q Consensus 135 d~~~~~~~~~~~~~~~~i-------------~~i~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~ 189 (290)
|..+|+.+..+... +.+ ..+.-.| .+..+++|+. .|.|+-+|.++++.+-.+..
T Consensus 276 DA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 276 DADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred ECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence 99999988766421 111 0111122 2345666643 68899999999988766542
Q ss_pred C---------C--------CCe-EEEEEcCCCCEEEEEe------------------CCCeEEEEcCCCCeeeEEEeCCC
Q 022910 190 H---------G--------SSV-TCGDFTPDGKTICTGS------------------DDATLRVWNPKSGENIHVIRGHP 233 (290)
Q Consensus 190 ~---------~--------~~i-~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~~~~~ 233 (290)
. . ..+ ..+++.|...+++.+. ..+.|.-.|+.+++....++..+
T Consensus 355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~ 434 (764)
T TIGR03074 355 GNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVH 434 (764)
T ss_pred CCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccC
Confidence 1 0 011 2344555444444422 13457777888998877776522
Q ss_pred Ccc-------cCeEEEEEcC-CCC---EEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910 234 YHT-------EGLTCLTISA-DST---LALSGSKDGSVHMVNITTGKVVSSLV 275 (290)
Q Consensus 234 ~~~-------~~v~~~~~~~-~~~---~l~~~~~dg~i~~wd~~~~~~~~~~~ 275 (290)
|. ....-+.+.. +|+ .++.++.+|.++++|.++|+++...+
T Consensus 435 -hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 435 -HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred -CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 11 1112222322 553 89999999999999999999987654
No 377
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.00 E-value=0.0026 Score=50.26 Aligned_cols=171 Identities=13% Similarity=0.209 Sum_probs=114.1
Q ss_pred ccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCC-CCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc
Q 022910 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG-GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA 182 (290)
Q Consensus 104 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~ 182 (290)
.+-...+.++.|+|+.+.|++......-.|+=...|+.+.++.... ...-.|.|...+.+.++--.++.++++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 4445569999999999998888888888888778888888776321 234557777777777777778888888776552
Q ss_pred EEEe----------eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEe---CCC----CcccCeEEEEEc
Q 022910 183 YLNM----------FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR---GHP----YHTEGLTCLTIS 245 (290)
Q Consensus 183 ~~~~----------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~----~~~~~v~~~~~~ 245 (290)
.+.. ....+.....++|.|....|+.+-.-.-+.||............ .+. ..-..+.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 2111 11125677899999998889888888888887765332111111 100 012357788888
Q ss_pred C-CCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910 246 A-DSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (290)
Q Consensus 246 ~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 275 (290)
+ .+.+|+-+..++.+.-.|. .|.++..+.
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~-~G~~~~~ls 271 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDL-SGEVIELLS 271 (316)
T ss_pred CCCCcEEEEecCCceEEEEec-CCCeeeeEE
Confidence 7 5667777777777777775 455454443
No 378
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.98 E-value=0.0057 Score=49.62 Aligned_cols=157 Identities=13% Similarity=0.220 Sum_probs=85.2
Q ss_pred eccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEEC-Ccc
Q 022910 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA-DRA 181 (290)
Q Consensus 103 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~-~~~ 181 (290)
...-.+.+..+..+++|+++++++....+.-|+.-...-...-+.....|..|.|.|++.+.+++ ..|.|+.=+. ...
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 34455778889899999999988766666677754433333333345689999999998776655 7788888872 222
Q ss_pred cEEEe----eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC
Q 022910 182 AYLNM----FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD 257 (290)
Q Consensus 182 ~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 257 (290)
..-.. +....-.+..++|.+++...++|+ .|.| +.....|+.-+..+........++.+.|.+..+-++. +.+
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~ 295 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQD 295 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--ST
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCC
Confidence 21111 112334578999998877666665 5544 4555667766665543334567888888765555554 568
Q ss_pred CcEEEE
Q 022910 258 GSVHMV 263 (290)
Q Consensus 258 g~i~~w 263 (290)
|.|.-|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 877665
No 379
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.96 E-value=2.5e-05 Score=41.54 Aligned_cols=38 Identities=32% Similarity=0.515 Sum_probs=33.6
Q ss_pred CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEE
Q 022910 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWR 93 (290)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 93 (290)
.+...+..|...|.++.|++ ...++++++.++.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 45778889999999999999 668899999999999995
No 380
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.93 E-value=1.8e-05 Score=59.64 Aligned_cols=140 Identities=19% Similarity=0.218 Sum_probs=81.9
Q ss_pred EEEEeCCCcEEEEcCCCCceEEEEe-cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE-EEeeecCCCCeEE-EE
Q 022910 122 LASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY-LNMFSGHGSSVTC-GD 198 (290)
Q Consensus 122 l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~-~~ 198 (290)
+...+.+|.|+-++++.-+....-. .+... ...-.-+..+++|+.+|.|++|.....-. ...+......|.+ +.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 4445668888888776543321111 11111 11112356899999999999998763211 1111112223322 22
Q ss_pred EcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcc-cCeEEEEEcCCCCEEEEE--eCCCcEEEEEcCC
Q 022910 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT-EGLTCLTISADSTLALSG--SKDGSVHMVNITT 267 (290)
Q Consensus 199 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~~wd~~~ 267 (290)
-..++.+..+++.+|.|+.|+..-++.+..... |. .++..+.....+.+|+.+ +.|..++.|++..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~---h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ---HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeecc---ccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 223456788999999999999988877666655 33 344444445556666666 6777777777654
No 381
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.92 E-value=5.4e-05 Score=40.12 Aligned_cols=38 Identities=39% Similarity=0.818 Sum_probs=33.3
Q ss_pred cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEc
Q 022910 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (290)
Q Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 219 (290)
++...+..|...|.++.|.+.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566677888999999999999999999999999996
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=8.2e-05 Score=67.67 Aligned_cols=104 Identities=18% Similarity=0.281 Sum_probs=79.2
Q ss_pred CCCEEEEeeCCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccC
Q 022910 160 RGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG 238 (290)
Q Consensus 160 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 238 (290)
.+..++.|+..|.+...|.... .+...-....++|++++|+.+|.+++.|-.+|.|.+||+..++..+.+..+......
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 5667899999999999988764 222222335689999999999999999999999999999998888888764434444
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910 239 LTCLTISADSTLALSGSKDGSVHMVNI 265 (290)
Q Consensus 239 v~~~~~~~~~~~l~~~~~dg~i~~wd~ 265 (290)
+-.+.+..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 555556666777888887776 4554
No 383
>PHA03098 kelch-like protein; Provisional
Probab=97.82 E-value=0.0041 Score=55.39 Aligned_cols=186 Identities=12% Similarity=0.203 Sum_probs=93.5
Q ss_pred CCcEEEEecCCC------cEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCC-----CcEEEEcCCCCceE
Q 022910 76 DATLVATGGGDD------KGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGNLK 142 (290)
Q Consensus 76 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~ 142 (290)
++.+++.|+.++ .+..||..+.+.... +.........+.+ ++..++.|+.+ ..+..||..+++..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456777776543 477888877665332 1111122222223 56677777754 35778888776543
Q ss_pred EEEecCCCC-EEEEEEcCCCCEEEEeeCC------CeEEEEECCcccEEEe--eecCCCCeEEEEEcCCCCEEEEEeCC-
Q 022910 143 CTLEGPGGG-VEWVSWHPRGHIVLAGSED------STVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSDD- 212 (290)
Q Consensus 143 ~~~~~~~~~-i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d- 212 (290)
..-..+... -.+++ .-+++.++.|+.. ..+..||+.+.+-... +....... ++.. .++.+++.|+..
T Consensus 372 ~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~ 448 (534)
T PHA03098 372 EEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HDGKIYVIGGISY 448 (534)
T ss_pred eCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-ECCEEEEECCccC
Confidence 221111111 11122 2256777777632 4588899877643322 11111111 2222 245566666543
Q ss_pred -------CeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 022910 213 -------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGK 269 (290)
Q Consensus 213 -------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~ 269 (290)
..+.+||..+++= ..+...+........+.+ ++++++.|+.+ +.|.+||..+.+
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKW-TELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCCcccceEEEecCCCCce-eeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 2388899876532 222211111111222222 67777777754 478899887653
No 384
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.79 E-value=0.0078 Score=49.99 Aligned_cols=194 Identities=15% Similarity=0.155 Sum_probs=94.5
Q ss_pred EccCCeeeeeeccccCCEEEE-----EECCCCCEEEEEeC---CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEE
Q 022910 93 RINQGDWASEIQGHKDSVSSL-----AFSMDGQLLASGGL---DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164 (290)
Q Consensus 93 ~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 164 (290)
|..+|..+.++.........+ +|.++|++|+.++. ...+++.|+.+++..+...+.........++|+.+.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 455666666665433333323 45678876666554 4567888999988776555433323346677888887
Q ss_pred EEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEc--CCCCEEEEEe----------------------CCCeEEEEcC
Q 022910 165 LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT--PDGKTICTGS----------------------DDATLRVWNP 220 (290)
Q Consensus 165 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~----------------------~dg~i~i~d~ 220 (290)
+-.-....|+-.|+++.+....+......+-...|. .++..++-.- -...|.-.|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 766666789999999988766666566666555564 3555543221 1234667788
Q ss_pred CCCeeeEEEeCCCCcccCeEEEEEcCCC-CEEEEEeC---CC-cEEEEEcC-CCcEEEEEccCC--CcEEEEEEecCC
Q 022910 221 KSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGSK---DG-SVHMVNIT-TGKVVSSLVSHT--DSIECIGFSRSE 290 (290)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~---dg-~i~~wd~~-~~~~~~~~~~~~--~~v~~i~~s~d~ 290 (290)
.+++....+. ....+..+.|+|.. .+|+-|-. +. .-|||-++ .+...+.+..+. ..+..=-|.|||
T Consensus 176 ~tG~~~~v~~----~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG 249 (386)
T PF14583_consen 176 KTGERKVVFE----DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDG 249 (386)
T ss_dssp TT--EEEEEE----ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTS
T ss_pred CCCceeEEEe----cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCC
Confidence 8887755555 45678899999944 44444322 21 12445443 244444443332 234444556654
No 385
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.78 E-value=0.012 Score=47.58 Aligned_cols=145 Identities=13% Similarity=0.155 Sum_probs=91.1
Q ss_pred CCCCEEEEEeCCCcEEEEcCCC-CceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee--------
Q 022910 117 MDGQLLASGGLDGLVQIWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-------- 187 (290)
Q Consensus 117 ~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------- 187 (290)
..++.|+.|+.+| |+++++.. ........ ..+|..+...|.-+.|++-+. +.++++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEcC-CccEEEEchhhcccccccccccccc
Confidence 3577899999998 99999833 33333322 233999999998777666654 99999998765433311
Q ss_pred ------ecCCCCeEEEE--EcCCCCEEEEEeCCCeEEEEcCCCC-----eeeEEEeCCCCcccCeEEEEEcCCCCEEEEE
Q 022910 188 ------SGHGSSVTCGD--FTPDGKTICTGSDDATLRVWNPKSG-----ENIHVIRGHPYHTEGLTCLTISADSTLALSG 254 (290)
Q Consensus 188 ------~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 254 (290)
......+...+ -.+.+...++......|.+|..... +..+.+. ....+..++|. ++.|+.|
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~----lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS----LPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE----cCCCcEEEEEe--CCEEEEE
Confidence 11223344444 1123333333444558888877653 3334444 45788999998 5577777
Q ss_pred eCCCcEEEEEcCCCcEEE
Q 022910 255 SKDGSVHMVNITTGKVVS 272 (290)
Q Consensus 255 ~~dg~i~~wd~~~~~~~~ 272 (290)
..+ ...+.|+.++....
T Consensus 155 ~~~-~f~~idl~~~~~~~ 171 (275)
T PF00780_consen 155 TSK-GFYLIDLNTGSPSE 171 (275)
T ss_pred eCC-ceEEEecCCCCceE
Confidence 655 47788998766543
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.76 E-value=0.012 Score=46.31 Aligned_cols=185 Identities=17% Similarity=0.180 Sum_probs=119.6
Q ss_pred eeeeeccccC--CEEEEEECCCCCEEEEEeCCC--cEEEEcCCCCceEEEEecCCC-CEEEEEEcCCCCEEEEeeCCCeE
Q 022910 99 WASEIQGHKD--SVSSLAFSMDGQLLASGGLDG--LVQIWDPSSGNLKCTLEGPGG-GVEWVSWHPRGHIVLAGSEDSTV 173 (290)
Q Consensus 99 ~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i 173 (290)
.+.+++ |.. -...+.|..++.++-+.+.-| .|+.+|+.+++......-... ---.++.. +++.+...-.++..
T Consensus 35 vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 35 VVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEE
T ss_pred EEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeE
Confidence 344444 433 345677867787777777655 799999999998766654332 22234433 34455556678999
Q ss_pred EEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC--cccCeEEEEEcCCCCEE
Q 022910 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY--HTEGLTCLTISADSTLA 251 (290)
Q Consensus 174 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l 251 (290)
.+||..+.+.+.++.-. +.=+.++. ++..|+.+.....|+++|..+.+....+..... .-..++-+-|- +|.+.
T Consensus 113 f~yd~~tl~~~~~~~y~-~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy 188 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPYP-GEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY 188 (264)
T ss_dssp EEEETTTTEEEEEEE-S-SS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred EEEccccceEEEEEecC-CcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence 99999999988888643 45577774 577788888888999999998877766654211 12245666665 67777
Q ss_pred EEEeCCCcEEEEEcCCCcEEEEEcc------------C---CCcEEEEEEecC
Q 022910 252 LSGSKDGSVHMVNITTGKVVSSLVS------------H---TDSIECIGFSRS 289 (290)
Q Consensus 252 ~~~~~dg~i~~wd~~~~~~~~~~~~------------~---~~~v~~i~~s~d 289 (290)
|-.-....|...|..+|+++..+.. + ..-.++|||.|.
T Consensus 189 ANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~ 241 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE 241 (264)
T ss_dssp EEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred EEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence 7777778899999999999887631 1 245789999875
No 387
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.73 E-value=0.013 Score=46.07 Aligned_cols=182 Identities=13% Similarity=0.134 Sum_probs=113.4
Q ss_pred EEEEEECCCCCcEEEEecCCC--cEEEEEccCCeeeeeecccc-CCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE
Q 022910 67 VYSVACSPTDATLVATGGGDD--KGFFWRINQGDWASEIQGHK-DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (290)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 143 (290)
...+.|.. ++.++-+.+.-| .|+.+++.+++......-.. ----.+... +++.+...-.++...+||..+.+.+.
T Consensus 47 TQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence 35677755 566776766656 68999999988766544211 111223332 33444444568999999999999988
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecC--C---CCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 022910 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--G---SSVTCGDFTPDGKTICTGSDDATLRVW 218 (290)
Q Consensus 144 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~i~~~~~~~~~~~l~~~~~dg~i~i~ 218 (290)
++... +.=+.++ .++..|+.+.....|+++|..+.+..+.+... . ..+.-+.|. +|...|=.-....|...
T Consensus 125 ~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 125 TFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence 88754 3456666 36777888877889999999888777665432 2 245567776 56555555566788899
Q ss_pred cCCCCeeeEEEeCCC------------CcccCeEEEEEcCCCC-EEEEE
Q 022910 219 NPKSGENIHVIRGHP------------YHTEGLTCLTISADST-LALSG 254 (290)
Q Consensus 219 d~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~-~l~~~ 254 (290)
|..+|+....+.... ....-.+.+++.|... +++||
T Consensus 201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 999998877663211 0135689999998554 55555
No 388
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.73 E-value=0.02 Score=47.71 Aligned_cols=218 Identities=12% Similarity=0.115 Sum_probs=107.3
Q ss_pred CCCCceeeeccCCcCEEEEE-----ECCCCCcEEEEecCCCc--EEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEE
Q 022910 52 QPDDSTHIFSGHSDEVYSVA-----CSPTDATLVATGGGDDK--GFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS 124 (290)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~-----~~~~~~~~l~~~~~dg~--i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 124 (290)
..+..+..|..+...-..+- |.+++.++|+++..+|. +.+.|+.+++...--.+.........++|+++.++-
T Consensus 18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y 97 (386)
T PF14583_consen 18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY 97 (386)
T ss_dssp TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence 34556666665555444443 44545567777766664 666677777655433322122224567788888776
Q ss_pred EeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEc--CCCCEEEEee----------------------CCCeEEEEECCc
Q 022910 125 GGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH--PRGHIVLAGS----------------------EDSTVWMWNADR 180 (290)
Q Consensus 125 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~--~~~~~l~~~~----------------------~dg~i~i~d~~~ 180 (290)
......|+-.|+.+.+....+..+....-...|. .++..++-.- -...|...|+.+
T Consensus 98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t 177 (386)
T PF14583_consen 98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT 177 (386)
T ss_dssp EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT
T ss_pred EECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC
Confidence 6666789999999998777777666655555664 3455544321 123566677887
Q ss_pred ccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEcCCC-CeeeEEEeCCCCcccCeEEEEEcCCCCEEEEE
Q 022910 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA-----TLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSG 254 (290)
Q Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 254 (290)
++....+. ....+.-+.|+|....+++-|..| .-|||-+++ +.....+.... ....+..=-|.|+|..|.--
T Consensus 178 G~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~ 255 (386)
T PF14583_consen 178 GERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYD 255 (386)
T ss_dssp --EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEE
T ss_pred CceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEE
Confidence 77544444 566788899999555555544333 125554432 23333443322 24456666799999866542
Q ss_pred e-----CCCcEEEEEcCCCcEE
Q 022910 255 S-----KDGSVHMVNITTGKVV 271 (290)
Q Consensus 255 ~-----~dg~i~~wd~~~~~~~ 271 (290)
+ .+..|.-+++.+++..
T Consensus 256 ~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 256 SYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp EEETTT--EEEEEE-TTT--EE
T ss_pred eecCCCCceEEEeeCCCCCCce
Confidence 2 2446777888877643
No 389
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.72 E-value=0.015 Score=46.10 Aligned_cols=191 Identities=14% Similarity=0.185 Sum_probs=119.1
Q ss_pred ccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc-ccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 022910 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (290)
Q Consensus 61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 139 (290)
.|-...|.++.|+|+...++++ ...+.-.++=...|+.+.++.- .-...-.+.+..++++.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav-~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAV-TNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEe-cCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3445569999999955555555 4556666777777888887652 1223356778878888888778899998887665
Q ss_pred ceEEEE----------ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE---Eeeec-------CCCCeEEEEE
Q 022910 140 NLKCTL----------EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL---NMFSG-------HGSSVTCGDF 199 (290)
Q Consensus 140 ~~~~~~----------~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~-------~~~~i~~~~~ 199 (290)
.....+ .......-.++|.|....|+.+=.-.-+.||.+...... ..... .-..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 322211 111445788999999888888887777777776543211 11111 1235678888
Q ss_pred cC-CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCC------cccCeEEEEEcCCCCEEEE
Q 022910 200 TP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPY------HTEGLTCLTISADSTLALS 253 (290)
Q Consensus 200 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~ 253 (290)
.+ .+.+|+-+..++.|.-.|.. +..+..+..... .....-.++..++|.+.++
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 87 45666777778888888875 343443332111 1123445677666654443
No 390
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.67 E-value=0.026 Score=47.59 Aligned_cols=214 Identities=14% Similarity=0.123 Sum_probs=102.8
Q ss_pred CCceeeec-cCC-cCEEEEEECC-----------CCCcEEEEecCCCcEEEEEccC----Ceeeeeecc---cc----CC
Q 022910 54 DDSTHIFS-GHS-DEVYSVACSP-----------TDATLVATGGGDDKGFFWRINQ----GDWASEIQG---HK----DS 109 (290)
Q Consensus 54 ~~~~~~~~-~h~-~~v~~~~~~~-----------~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~---~~----~~ 109 (290)
.+.+..+. .+. +.....-|+. ...++++-|-..+.|+|+|+.+ .++.+.+.. +. ..
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~ 131 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSR 131 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEE
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCC
Confidence 34444442 232 4666666651 1334555566889999999984 344444432 11 22
Q ss_pred EEEEEECCCCCEEEEEeC------CCcEEEEcCCCCceEEEEecCC---CCEEEEEEcCCCCEEEEeeC-----------
Q 022910 110 VSSLAFSMDGQLLASGGL------DGLVQIWDPSSGNLKCTLEGPG---GGVEWVSWHPRGHIVLAGSE----------- 169 (290)
Q Consensus 110 i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~----------- 169 (290)
-..+-.-|+|+.++++-. -|-+.++|-++.+......... ..-..+-|.|..+.++++..
T Consensus 132 PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~ 211 (461)
T PF05694_consen 132 PHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFN 211 (461)
T ss_dssp EEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---
T ss_pred CceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCC
Confidence 334445578888887622 3568888888888777765432 23466788898888888653
Q ss_pred ---------CCeEEEEECCcccEEEeeecCCC--CeEEEEEcCC--CCE-EEEEeCCCeEEEEcC-CCCe----eeEEEe
Q 022910 170 ---------DSTVWMWNADRAAYLNMFSGHGS--SVTCGDFTPD--GKT-ICTGSDDATLRVWNP-KSGE----NIHVIR 230 (290)
Q Consensus 170 ---------dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~--~~~-l~~~~~dg~i~i~d~-~~~~----~~~~~~ 230 (290)
..++.+||+.+.+.++++.-... .+..+.|..+ ..+ ++.+...++|..|-. ..+. .+-.+.
T Consensus 212 ~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip 291 (461)
T PF05694_consen 212 PEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP 291 (461)
T ss_dssp TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred hhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence 35799999999999998875432 3456666553 333 333334555555533 3332 111221
Q ss_pred CCC--------------CcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 022910 231 GHP--------------YHTEGLTCLTISADSTLALSGSK-DGSVHMVNITT 267 (290)
Q Consensus 231 ~~~--------------~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~ 267 (290)
..+ ....-|+.+.+|.|.++|+.++. .|.|+.||+..
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 110 01345789999999999888776 89999999975
No 391
>PHA02790 Kelch-like protein; Provisional
Probab=97.64 E-value=0.011 Score=51.85 Aligned_cols=184 Identities=13% Similarity=0.094 Sum_probs=91.9
Q ss_pred CCcEEEEecCCC-----cEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCC--CcEEEEcCCCCceEEEEe
Q 022910 76 DATLVATGGGDD-----KGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD--GLVQIWDPSSGNLKCTLE 146 (290)
Q Consensus 76 ~~~~l~~~~~dg-----~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~ 146 (290)
++.++++|+.++ .+..||..+++.... +.........+. -++...++|+.+ ..+..|+..+++....-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 556777887643 467788777654432 221121222222 366677777653 357788876654332211
Q ss_pred cCCCCEEEEEEcCCCCEEEEeeCCC---eEEEEECCcccEEEe--eecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCC
Q 022910 147 GPGGGVEWVSWHPRGHIVLAGSEDS---TVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221 (290)
Q Consensus 147 ~~~~~i~~i~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 221 (290)
-+..........-+++..+.|+.++ .+..||.++.+-... +.........+.+ ++.+.+.| |.+.+||..
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCEEEEEC---CceEEecCC
Confidence 1111111111122677778877653 467888876643321 1111111122222 45555555 457789987
Q ss_pred CCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 022910 222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGK 269 (290)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~ 269 (290)
+++ ...+...+........+.+ ++++.++||.+ ..|.+||..+.+
T Consensus 424 ~~~-W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 424 SNT-WTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCc-EeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 643 2222222111222222232 67788888764 356677766543
No 392
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.61 E-value=0.00021 Score=54.07 Aligned_cols=137 Identities=12% Similarity=0.073 Sum_probs=81.1
Q ss_pred ecCCCcEEEEEccCCeeeeeec-cccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceE-EEEecCCCCEEEEE-EcC
Q 022910 83 GGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK-CTLEGPGGGVEWVS-WHP 159 (290)
Q Consensus 83 ~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~i~-~~~ 159 (290)
-+.+|.|+-+++...+....-. .+... .....-+..+++|+.+|.|++|...-.... ..+......|-++. --.
T Consensus 36 ~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~ 112 (238)
T KOG2444|consen 36 TSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGR 112 (238)
T ss_pred ccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccccc
Confidence 3556777776665433222111 12211 112224567999999999999998732111 11111222333322 223
Q ss_pred CCCEEEEeeCCCeEEEEECCcccEEEeeecCC-CCeEEEEEcCCCCEEEEE--eCCCeEEEEcCCC
Q 022910 160 RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTPDGKTICTG--SDDATLRVWNPKS 222 (290)
Q Consensus 160 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~ 222 (290)
++.+..++..+|.|+.|++.-.+.+-....|. .++..+..+..+++++.+ +.+..++.|++..
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 45688899999999999999888777766666 455555555556666666 6677777777653
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.61 E-value=0.008 Score=53.64 Aligned_cols=187 Identities=17% Similarity=0.283 Sum_probs=103.9
Q ss_pred CCcEEEEecCC------CcEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCCC-----cEEEEcCCCCceE
Q 022910 76 DATLVATGGGD------DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLDG-----LVQIWDPSSGNLK 142 (290)
Q Consensus 76 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~ 142 (290)
++.++++|+.+ ..+..||..+++.... +...........+ +|...|+|+.+| ++-.||..+.+..
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~ 409 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT 409 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccc
Confidence 45788899988 3577888877765542 2222222222222 788888898886 4677887776543
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEeeCCC------eEEEEECCcccEEE--eeecCCCCeEEEEEcCCCCEEEEEeCCC-
Q 022910 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDS------TVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDDA- 213 (290)
Q Consensus 143 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg- 213 (290)
..-.-....-..-...-++.+.++|+.++ .+..||..+.+... .+...........+ ++.+.++|+.++
T Consensus 410 ~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~ 487 (571)
T KOG4441|consen 410 PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGT 487 (571)
T ss_pred ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCC
Confidence 22211111111111122678888888554 46788877765332 22222222222222 567778888776
Q ss_pred ----eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCc
Q 022910 214 ----TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTGK 269 (290)
Q Consensus 214 ----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~ 269 (290)
+|..||..+.+=. .+.......+.+..+.+ ++...++|+.|| +|..||..+.+
T Consensus 488 ~~~~~VE~ydp~~~~W~-~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 488 SALSSVERYDPETNQWT-MVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CccceEEEEcCCCCcee-EcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 3778998875532 22222212233333333 577888888876 57778766543
No 394
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0015 Score=60.23 Aligned_cols=145 Identities=14% Similarity=-0.005 Sum_probs=93.4
Q ss_pred CCEEEEEECCCCCEEEEE--eCCCcEEEEcCCCCceEE-----------EEecCCCCEEEEEEcCCCC-EEEEeeCCCeE
Q 022910 108 DSVSSLAFSMDGQLLASG--GLDGLVQIWDPSSGNLKC-----------TLEGPGGGVEWVSWHPRGH-IVLAGSEDSTV 173 (290)
Q Consensus 108 ~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~-----------~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i 173 (290)
-+|..+...+++...++. +.+-.|..||+++...-. +.........++.|.|.-. ..++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 356666677787654444 334478899987542211 1111223456788888543 45667778889
Q ss_pred EEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCc-ccCeEEEEEcCCCCEEE
Q 022910 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH-TEGLTCLTISADSTLAL 252 (290)
Q Consensus 174 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~ 252 (290)
++..+........--......++++|+|.|+.+++|...|++.-|... ++....+...+.. ...|.+++|-....+|+
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 888775443222212345678999999999999999999999999764 4443444444333 36799999987666665
Q ss_pred E
Q 022910 253 S 253 (290)
Q Consensus 253 ~ 253 (290)
+
T Consensus 260 v 260 (1405)
T KOG3630|consen 260 V 260 (1405)
T ss_pred E
Confidence 4
No 395
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.58 E-value=0.025 Score=45.03 Aligned_cols=148 Identities=21% Similarity=0.195 Sum_probs=89.8
Q ss_pred CEEEEEECCCCCEEEEEe---CCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEE-CCcccEE
Q 022910 109 SVSSLAFSMDGQLLASGG---LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN-ADRAAYL 184 (290)
Q Consensus 109 ~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~ 184 (290)
.+...+++++++.++... ....|+++.. +....... ....+....|++++...+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999777665 3345555543 33332322 223688889999988777777666666663 3333221
Q ss_pred -Eeeec--CCCCeEEEEEcCCCCEEEEEe---CCCeEEEEcCC---CCee---eEEEeCCCCcccCeEEEEEcCCCCEEE
Q 022910 185 -NMFSG--HGSSVTCGDFTPDGKTICTGS---DDATLRVWNPK---SGEN---IHVIRGHPYHTEGLTCLTISADSTLAL 252 (290)
Q Consensus 185 -~~~~~--~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~---~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~ 252 (290)
..... ....|..+.++|+|..++... .++.|.+--+. .+.. ...+.........++.+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 11211 112899999999999887655 35677765432 2201 111111111346789999999988877
Q ss_pred EEeCCCc
Q 022910 253 SGSKDGS 259 (290)
Q Consensus 253 ~~~~dg~ 259 (290)
.+...+.
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 7765443
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.55 E-value=0.0098 Score=53.10 Aligned_cols=186 Identities=18% Similarity=0.278 Sum_probs=102.9
Q ss_pred CCcEEEEecCCC------cEEEEEccCCeeeeeecc-ccCCEEEEEECCCCCEEEEEeCC------CcEEEEcCCCCceE
Q 022910 76 DATLVATGGGDD------KGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLD------GLVQIWDPSSGNLK 142 (290)
Q Consensus 76 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~ 142 (290)
.+.+++.|+..+ .+..||..++.......- ....-.++++. ++...++|+.+ .++..||..+++..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 456777887763 688888888754433221 22223334443 56778888888 35778888877644
Q ss_pred EEEe--cCCCCEEEEEEcCCCCEEEEeeCCCe-----EEEEECCcccEEEe--eecCCCCeEEEEEcCCCCEEEEEeCCC
Q 022910 143 CTLE--GPGGGVEWVSWHPRGHIVLAGSEDST-----VWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSDDA 213 (290)
Q Consensus 143 ~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg 213 (290)
..-. ..........+ +|.+.++|+.+|. +-.||..+.+.... +...........+ +|.+.++|+.++
T Consensus 363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDG 438 (571)
T ss_pred ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCC
Confidence 3211 11111111111 6888999998874 77788776543222 2211122222222 577777887554
Q ss_pred ------eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCc
Q 022910 214 ------TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTGK 269 (290)
Q Consensus 214 ------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~ 269 (290)
.+..||..++.= ..+..............+ ++.+++.||.++ +|..||..+.+
T Consensus 439 ~~~~l~sve~YDP~t~~W-~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTW-TLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred CccccceEEEEcCCCCce-eecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCc
Confidence 578889877542 111111111122222222 677888888776 37778877644
No 397
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.51 E-value=0.013 Score=50.85 Aligned_cols=149 Identities=13% Similarity=0.088 Sum_probs=89.4
Q ss_pred cCCEEEEEECCCCCEEEEEe---CCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCC----CCEEEEeeCCCeEEEEECC
Q 022910 107 KDSVSSLAFSMDGQLLASGG---LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR----GHIVLAGSEDSTVWMWNAD 179 (290)
Q Consensus 107 ~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~----~~~l~~~~~dg~i~i~d~~ 179 (290)
-.++..++|. ||+.++... ..|.+++=| .+.+..| ..|..+.|.|- ...|++.-....|.+|-+.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3578999997 666544432 234333322 1223333 34888999984 3356666667899999876
Q ss_pred c-----ccEEEeeec-----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCC
Q 022910 180 R-----AAYLNMFSG-----HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST 249 (290)
Q Consensus 180 ~-----~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 249 (290)
. .+.+..... ..--...+.|+|....|++-.....-.+++++.......... ...+-|.|.+|.+||+
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi--~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI--KTSGLIHCACWTKDGQ 168 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec--cCCceEEEEEecCcCC
Confidence 2 222221111 112235677999988887765554444666654433222221 1567899999999998
Q ss_pred EEEEEeCC-CcEEEEEc
Q 022910 250 LALSGSKD-GSVHMVNI 265 (290)
Q Consensus 250 ~l~~~~~d-g~i~~wd~ 265 (290)
.|+++-.. =.-++||-
T Consensus 169 RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EEEEEeCCeEEEEEecC
Confidence 87776433 35688884
No 398
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.50 E-value=0.048 Score=46.33 Aligned_cols=86 Identities=9% Similarity=0.168 Sum_probs=61.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCC-----------------CC-EEE
Q 022910 191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-----------------ST-LAL 252 (290)
Q Consensus 191 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~-~l~ 252 (290)
...+.+|+.+|.+++.++...-|.|.++|+.++..++.+++.. ...+..+..... .. +++
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 3457889999999999998888999999999998888887753 222221111111 11 233
Q ss_pred EEeCCCcEEEEEcCCCcEEEEEccCC
Q 022910 253 SGSKDGSVHMVNITTGKVVSSLVSHT 278 (290)
Q Consensus 253 ~~~~dg~i~~wd~~~~~~~~~~~~~~ 278 (290)
-+-.-|.|-||.+++|..+..+....
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~v~k 410 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFNVGK 410 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEEeCC
Confidence 35567899999999999998887533
No 399
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.47 E-value=0.058 Score=46.44 Aligned_cols=154 Identities=16% Similarity=0.253 Sum_probs=89.1
Q ss_pred EEEEEECCCCCEEEEE-eCCC----cEEEEcCCCCceEEEE-ecCCCCEEEEEEcCCCCEEEEeeCC-----------Ce
Q 022910 110 VSSLAFSMDGQLLASG-GLDG----LVQIWDPSSGNLKCTL-EGPGGGVEWVSWHPRGHIVLAGSED-----------ST 172 (290)
Q Consensus 110 i~~~~~~~~~~~l~~~-~~dg----~i~i~d~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~d-----------g~ 172 (290)
+....++|+++++|.+ +..| .|+++|+.+++.+... .... ...+.|.++++.|+....+ ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 4467889999988765 3344 5999999999776532 2221 2339999998877665432 24
Q ss_pred EEEEECCcccE--EEeeecCCC--CeEEEEEcCCCCEEEEEeC---C-CeEEEEcCCCC----eeeEEEeCCCCcccCe-
Q 022910 173 VWMWNADRAAY--LNMFSGHGS--SVTCGDFTPDGKTICTGSD---D-ATLRVWNPKSG----ENIHVIRGHPYHTEGL- 239 (290)
Q Consensus 173 i~i~d~~~~~~--~~~~~~~~~--~i~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~----~~~~~~~~~~~~~~~v- 239 (290)
|+.|.+.+... ...+..... ....+..++++++|+..+. + ..+++.++..+ .....+.. ....+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~---~~~~~~ 280 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP---REDGVE 280 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE---SSSS-E
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC---CCCceE
Confidence 88888876642 233333222 2567889999999875433 2 35888888774 23333332 22223
Q ss_pred EEEEEcCCCCEEEEEeC---CCcEEEEEcCCCc
Q 022910 240 TCLTISADSTLALSGSK---DGSVHMVNITTGK 269 (290)
Q Consensus 240 ~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~ 269 (290)
..+... .+.+++.... .+.|...++....
T Consensus 281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred EEEEcc-CCEEEEeeCCCCCCcEEEEecccccc
Confidence 333333 4444444322 3567777776654
No 400
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.46 E-value=0.038 Score=44.19 Aligned_cols=220 Identities=14% Similarity=0.219 Sum_probs=126.5
Q ss_pred CEEEEEECCCCCcEEEEecCCCcEEEEEcc-------CCeeeeeecc-----ccCCEEEEEECCCCC------------E
Q 022910 66 EVYSVACSPTDATLVATGGGDDKGFFWRIN-------QGDWASEIQG-----HKDSVSSLAFSMDGQ------------L 121 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~-------~~~~~~~~~~-----~~~~i~~~~~~~~~~------------~ 121 (290)
.-+.|+++| .+.+.++....+...+|+.. ...++..+.. .....+.+.|+.... .
T Consensus 24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 347899999 66677777777899999986 1223333331 123567777764322 3
Q ss_pred EEEEeCCCcEEEEcCCCCce-----EEEEe-cCCC-CEEEEEEcC--CCCEEEEee-CCCeEEEEECCcccEE--Eeeec
Q 022910 122 LASGGLDGLVQIWDPSSGNL-----KCTLE-GPGG-GVEWVSWHP--RGHIVLAGS-EDSTVWMWNADRAAYL--NMFSG 189 (290)
Q Consensus 122 l~~~~~dg~i~i~d~~~~~~-----~~~~~-~~~~-~i~~i~~~~--~~~~l~~~~-~dg~i~i~d~~~~~~~--~~~~~ 189 (290)
++.++.+|+|.-|...-+.. ...+. ...+ -...+++.. .+.+|+.+. ..++|.+||-.=.+.. ..+..
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 67788999999998532222 12222 1112 233455543 345555543 5788998875422211 00110
Q ss_pred C-------CCCe---------EEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcC------C
Q 022910 190 H-------GSSV---------TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA------D 247 (290)
Q Consensus 190 ~-------~~~i---------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~------~ 247 (290)
. .-.| +-..-.++...=+.|..-|.|-+||+. ++.++.+.... .-...+.|+..| .
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g-~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSG-RLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCC-cccCCceeeeChhhhCCCC
Confidence 0 0001 111111222222333445789999985 66667664322 344566777765 4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcEEEEEccCCC------cEEEEEEec
Q 022910 248 STLALSGSKDGSVHMVNITTGKVVSSLVSHTD------SIECIGFSR 288 (290)
Q Consensus 248 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~------~v~~i~~s~ 288 (290)
+.+|+---.||+|..||..+++.+..+....+ .++.|+|..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 66777666799999999999998888875443 456777654
No 401
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.44 E-value=0.016 Score=50.34 Aligned_cols=148 Identities=14% Similarity=0.181 Sum_probs=91.5
Q ss_pred cCEEEEEECCCCCcEEEEec--CCCcEEEEEccCCeeeeeeccccCCEEEEEECCCC----CEEEEEeCCCcEEEEcCC-
Q 022910 65 DEVYSVACSPTDATLVATGG--GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG----QLLASGGLDGLVQIWDPS- 137 (290)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~d~~- 137 (290)
-+|..++|.- +...+.|.- .+|.+++=| .+.+ +.-..|..+.|.|-+ ..+++......|.||.+-
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4889999985 666666642 233333222 1222 234568999999843 245555668899999874
Q ss_pred ----CCceEEEEecCCC-----CEEEEEEcCCCCEEEEeeCCCeEEEEECCcc--cEEEeeecCCCCeEEEEEcCCCCEE
Q 022910 138 ----SGNLKCTLEGPGG-----GVEWVSWHPRGHIVLAGSEDSTVWMWNADRA--AYLNMFSGHGSSVTCGDFTPDGKTI 206 (290)
Q Consensus 138 ----~~~~~~~~~~~~~-----~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l 206 (290)
+++.+.....+-+ --..+.|||....|++-.....-.+++++.. +....+ ...+.|.|.+|.++|+.|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEE
Confidence 3343332222111 1245789999988888776655556666543 222333 356789999999999888
Q ss_pred EEEe-CCCeEEEEcCC
Q 022910 207 CTGS-DDATLRVWNPK 221 (290)
Q Consensus 207 ~~~~-~dg~i~i~d~~ 221 (290)
+++- ..=.-++||-.
T Consensus 171 VVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEeCCeEEEEEecCc
Confidence 7653 33456788754
No 402
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=97.43 E-value=0.006 Score=51.88 Aligned_cols=141 Identities=21% Similarity=0.217 Sum_probs=89.4
Q ss_pred CCcEEE-EecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCC--------CEEEEEeCCCcEEEEcCCC-CceEEEE
Q 022910 76 DATLVA-TGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG--------QLLASGGLDGLVQIWDPSS-GNLKCTL 145 (290)
Q Consensus 76 ~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~l~~~~~dg~i~i~d~~~-~~~~~~~ 145 (290)
+..+|+ .|+....++-.|+..|+.+.....|... -+.|.|.. +.|+-.| +..|.-.|.+- +..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeee
Confidence 334443 4555667777888889988888877664 56777753 2344444 44455555542 3222222
Q ss_pred ecCCCCEEEEEEc----CCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCC
Q 022910 146 EGPGGGVEWVSWH----PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221 (290)
Q Consensus 146 ~~~~~~i~~i~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 221 (290)
.. ....+.-.|+ ....++|+++..|.|++||--..+....+.+.+..|..+..+.+|+++++.|.. .|.+-|++
T Consensus 555 es-KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 555 ES-KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred ee-hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 11 1112222222 245599999999999999965555555667788899999999999998887754 56666654
No 403
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.35 E-value=0.042 Score=42.21 Aligned_cols=143 Identities=11% Similarity=0.111 Sum_probs=87.7
Q ss_pred cCCEEEEEECCCCCEEEEEeC---------CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEE-eeCCCeEEEE
Q 022910 107 KDSVSSLAFSMDGQLLASGGL---------DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMW 176 (290)
Q Consensus 107 ~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~i~i~ 176 (290)
..+...-..+|+|++++-.-. .|.++.|-... + +..+...-+--+.++|+.+.+.+.. -+.+-.|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~-v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-Q-VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC-C-ceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 445667778999998443222 24455554321 1 2222222333466889877775554 4556678777
Q ss_pred E--CCcccE-----EEeeec---C-CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEc
Q 022910 177 N--ADRAAY-----LNMFSG---H-GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS 245 (290)
Q Consensus 177 d--~~~~~~-----~~~~~~---~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 245 (290)
| ..++.. +..++. . .--.-.++....|++.+++-..|+|..+|+.+|+.+..+.. ....+++++|-
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl---Pt~qitsccFg 262 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL---PTPQITSCCFG 262 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc---CCCceEEEEec
Confidence 7 555532 222221 1 11123455566889999999999999999999999998886 56789999996
Q ss_pred C-CCCEEEEE
Q 022910 246 A-DSTLALSG 254 (290)
Q Consensus 246 ~-~~~~l~~~ 254 (290)
- +-..|++.
T Consensus 263 Gkn~d~~yvT 272 (310)
T KOG4499|consen 263 GKNLDILYVT 272 (310)
T ss_pred CCCccEEEEE
Confidence 3 33344443
No 404
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.35 E-value=0.073 Score=44.96 Aligned_cols=186 Identities=12% Similarity=0.108 Sum_probs=88.3
Q ss_pred EEECCCCCcEEEEe--c----CCCcEEEEEccCCeeeeeeccc---cCCEEEEEECCCCCEEEEEeC-------------
Q 022910 70 VACSPTDATLVATG--G----GDDKGFFWRINQGDWASEIQGH---KDSVSSLAFSMDGQLLASGGL------------- 127 (290)
Q Consensus 70 ~~~~~~~~~~l~~~--~----~dg~i~iw~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~------------- 127 (290)
+...| ++.+++++ . .-|-+.++|-++.+........ ..--+.+-|.|..+.+++...
T Consensus 135 ~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~ 213 (461)
T PF05694_consen 135 VHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPE 213 (461)
T ss_dssp EEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TT
T ss_pred eeecC-CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChh
Confidence 33445 56566654 2 2345778887776666655432 223466777888888888643
Q ss_pred -------CCcEEEEcCCCCceEEEEecCCC--CEEEEEEcC--CCCEEEEee-CCCeEEEEEC-Cccc----EEEeeec-
Q 022910 128 -------DGLVQIWDPSSGNLKCTLEGPGG--GVEWVSWHP--RGHIVLAGS-EDSTVWMWNA-DRAA----YLNMFSG- 189 (290)
Q Consensus 128 -------dg~i~i~d~~~~~~~~~~~~~~~--~i~~i~~~~--~~~~l~~~~-~dg~i~i~d~-~~~~----~~~~~~~- 189 (290)
..+|.+||+.+.+.++++..... ....+.|.. ...+=++++ -.++|..|-- ..++ .+..+..
T Consensus 214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp THHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred HhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 36899999999999999875432 345666654 444433333 3445555433 3332 1111111
Q ss_pred ----------------CCCCeEEEEEcCCCCEEEEEe-CCCeEEEEcCCCCeeeEEE---eCC-C------------Ccc
Q 022910 190 ----------------HGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGENIHVI---RGH-P------------YHT 236 (290)
Q Consensus 190 ----------------~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~---~~~-~------------~~~ 236 (290)
...-|+.|..|.+.++|+.++ ..|.|+.||+......+.. ..- . ...
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~ 373 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR 373 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence 134579999999999997655 5899999999765433222 100 0 012
Q ss_pred cCeEEEEEcCCCCEEEEEeC
Q 022910 237 EGLTCLTISADSTLALSGSK 256 (290)
Q Consensus 237 ~~v~~~~~~~~~~~l~~~~~ 256 (290)
+...-+..|.||+.|+..++
T Consensus 374 GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 374 GGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp S----EEE-TTSSEEEEE--
T ss_pred CCCCeEEEccCCeEEEEEee
Confidence 33467888899998887653
No 405
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.35 E-value=0.00087 Score=37.71 Aligned_cols=36 Identities=17% Similarity=0.359 Sum_probs=31.2
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 022910 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271 (290)
Q Consensus 235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 271 (290)
....|..++|+|...+||.|+.+|.|.+|.+ +++.+
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 4567999999999999999999999999998 55543
No 406
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.0042 Score=57.49 Aligned_cols=132 Identities=11% Similarity=0.033 Sum_probs=85.4
Q ss_pred CEEEEEEcCCCCEEEEe--eCCCeEEEEECCcccEEE-----------eeecCCCCeEEEEEcCCC-CEEEEEeCCCeEE
Q 022910 151 GVEWVSWHPRGHIVLAG--SEDSTVWMWNADRAAYLN-----------MFSGHGSSVTCGDFTPDG-KTICTGSDDATLR 216 (290)
Q Consensus 151 ~i~~i~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~-----------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~ 216 (290)
+|..+...+++...++. +.+-.|+.||+++..... ..........++.|.|.- ...+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45556666676654443 334479999998643211 111123345678888843 3456777899999
Q ss_pred EEcCCCCee-eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEccC----CCcEEEEEEe
Q 022910 217 VWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH----TDSIECIGFS 287 (290)
Q Consensus 217 i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~v~~i~~s 287 (290)
+.-+..... ...+. .....++++|+|.|+.++.|-..|++.-|-. +.+....+... ...|.+|+|-
T Consensus 182 V~~~~~~~~~v~s~p----~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP----VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred hhhhhhhhhhhcccC----cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEe
Confidence 987653322 12222 4567899999999999999999999998874 45544444432 3578888884
No 407
>PRK13684 Ycf48-like protein; Provisional
Probab=97.28 E-value=0.08 Score=44.09 Aligned_cols=153 Identities=10% Similarity=0.032 Sum_probs=87.7
Q ss_pred cCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEE-EEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEE
Q 022910 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN 185 (290)
Q Consensus 107 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 185 (290)
...+..+.+.|++.+++++. .|.+..-.-..++.-. ........++.+.+.++++.++++. .|.+++=....+..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCccc
Confidence 45688999999887766655 4655432112222222 2223345789999999988777654 5766543333333222
Q ss_pred eeec----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 022910 186 MFSG----HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (290)
Q Consensus 186 ~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 261 (290)
.... ....+..+.+.|++..+++ +.+|.|. .....++...............+.+.|..+++.++ .+..|.|.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il 326 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLL 326 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEE
Confidence 1111 2235788899987775554 4567654 34444554444432111234677788876666655 45678887
Q ss_pred EEE
Q 022910 262 MVN 264 (290)
Q Consensus 262 ~wd 264 (290)
.|+
T Consensus 327 ~~~ 329 (334)
T PRK13684 327 RYV 329 (334)
T ss_pred Eec
Confidence 765
No 408
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.25 E-value=0.0016 Score=36.64 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=30.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee
Q 022910 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN 225 (290)
Q Consensus 190 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 225 (290)
....|.+++|+|...+||.++.+|.|.+|.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3457999999999999999999999999998 5554
No 409
>PHA02713 hypothetical protein; Provisional
Probab=97.23 E-value=0.0067 Score=54.15 Aligned_cols=145 Identities=13% Similarity=0.136 Sum_probs=78.5
Q ss_pred CCcEEEEecCCC-----cEEEEEccCCeeee--eeccccCCEEEEEECCCCCEEEEEeCC--------------------
Q 022910 76 DATLVATGGGDD-----KGFFWRINQGDWAS--EIQGHKDSVSSLAFSMDGQLLASGGLD-------------------- 128 (290)
Q Consensus 76 ~~~~l~~~~~dg-----~i~iw~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d-------------------- 128 (290)
++.+.+.|+.++ .+..||..+.+... .+.........+.+ ++...+.|+.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence 456677777654 37888887765443 22211122222223 67777777654
Q ss_pred ---CcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCC------CeEEEEECCc-ccE--EEeeecCCCCeEE
Q 022910 129 ---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED------STVWMWNADR-AAY--LNMFSGHGSSVTC 196 (290)
Q Consensus 129 ---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~--~~~~~~~~~~i~~ 196 (290)
..+..||..+.+....-.-.......-...-++++.++|+.+ ..+..||..+ .+- +..+.........
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT 508 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence 247778887765432211111111111112256777777654 2467899887 443 3333333333333
Q ss_pred EEEcCCCCEEEEEeCCC--eEEEEcCCCCe
Q 022910 197 GDFTPDGKTICTGSDDA--TLRVWNPKSGE 224 (290)
Q Consensus 197 ~~~~~~~~~l~~~~~dg--~i~i~d~~~~~ 224 (290)
+.+ ++++.++|+.+| .+..||..+.+
T Consensus 509 ~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 509 ILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EEE--CCEEEEEeeecceeehhhcCccccc
Confidence 333 678888998888 67777776654
No 410
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.17 E-value=0.077 Score=44.86 Aligned_cols=144 Identities=16% Similarity=0.237 Sum_probs=81.2
Q ss_pred CCEEEEEECCCCCEEEEEe-----------CCC-cEEEEcCCC--Cc--eEEEEecCCCCEEEEEEcCCCCEEEEeeCCC
Q 022910 108 DSVSSLAFSMDGQLLASGG-----------LDG-LVQIWDPSS--GN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171 (290)
Q Consensus 108 ~~i~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~--~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 171 (290)
.....|+|.++|+.+++-. ..+ .|.+++-.. ++ ....+.........+++.+++ + +++....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-l-yV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-V-YVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-E-EEeCCCe
Confidence 3456789999998776643 223 677776432 22 223444334456889999888 4 4444433
Q ss_pred eEEEEECCcc-----c---EEEeeecC----CCCeEEEEEcCCCCEEEEEeC-------------------CCeEEEEcC
Q 022910 172 TVWMWNADRA-----A---YLNMFSGH----GSSVTCGDFTPDGKTICTGSD-------------------DATLRVWNP 220 (290)
Q Consensus 172 ~i~i~d~~~~-----~---~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~-------------------dg~i~i~d~ 220 (290)
..++.+.... + .+..+... ......++|.|+|.+.++-+. .|.|..++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334354321 1 11222221 234678999999987665442 145666666
Q ss_pred CCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC
Q 022910 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD 257 (290)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 257 (290)
.+++. ..+.. .-.....++|+|+|.++++-..+
T Consensus 172 dg~~~-e~~a~---G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGKL-RVVAH---GFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCeE-EEEec---CcCCCccceECCCCCEEEEccCC
Confidence 55443 33322 23446789999999888765433
No 411
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.098 Score=41.49 Aligned_cols=147 Identities=18% Similarity=0.255 Sum_probs=96.4
Q ss_pred CEEEEEECCCCC-EEEEEeCCCc-EEEEcCCCCceEEEEecCCCC--EEEEEEcCCCCEEEEeeC-----CCeEEEEECC
Q 022910 109 SVSSLAFSMDGQ-LLASGGLDGL-VQIWDPSSGNLKCTLEGPGGG--VEWVSWHPRGHIVLAGSE-----DSTVWMWNAD 179 (290)
Q Consensus 109 ~i~~~~~~~~~~-~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~-----dg~i~i~d~~ 179 (290)
....|.|+|... -++.+-.-|+ ..++|....+...++....+. .-.=.|||+|.+|+..-+ -|.|-+||.+
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 445678888654 4555555554 568898888776666543321 222468999999988654 3789999998
Q ss_pred cc-cEEEeeecCCCCeEEEEEcCCCCEEEEEeCC------------------CeEEEEcCCCCeeeEEEeCC-CCcccCe
Q 022910 180 RA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDD------------------ATLRVWNPKSGENIHVIRGH-PYHTEGL 239 (290)
Q Consensus 180 ~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------------g~i~i~d~~~~~~~~~~~~~-~~~~~~v 239 (290)
.+ +.+..+..|.-....+.|.++|+.++.+... -.+.+.|..+++.+.+..-. ..+.-.+
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 54 4566778888888899999999999876420 12444555555554332211 1244567
Q ss_pred EEEEEcCCCCEEEEEe
Q 022910 240 TCLTISADSTLALSGS 255 (290)
Q Consensus 240 ~~~~~~~~~~~l~~~~ 255 (290)
..+...++|..++.+-
T Consensus 229 RHld~g~dgtvwfgcQ 244 (366)
T COG3490 229 RHLDIGRDGTVWFGCQ 244 (366)
T ss_pred eeeeeCCCCcEEEEEE
Confidence 8888888887766553
No 412
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.09 E-value=0.13 Score=43.53 Aligned_cols=138 Identities=16% Similarity=0.144 Sum_probs=76.9
Q ss_pred CCEEEEEEcCCCCEEEEee-----------CCC-eEEEEECCc--cc--EEEeeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 022910 150 GGVEWVSWHPRGHIVLAGS-----------EDS-TVWMWNADR--AA--YLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (290)
Q Consensus 150 ~~i~~i~~~~~~~~l~~~~-----------~dg-~i~i~d~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 213 (290)
.....|+|.++|+++++-. ..+ .|.+++-.. ++ ....+...-.....|++.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3467789999998777643 223 677776532 22 223343333456889999888 44444444
Q ss_pred eEEEEcCCCC-----eeeEEEeCCCC----cccCeEEEEEcCCCCEEEEEeCC-------------------CcEEEEEc
Q 022910 214 TLRVWNPKSG-----ENIHVIRGHPY----HTEGLTCLTISADSTLALSGSKD-------------------GSVHMVNI 265 (290)
Q Consensus 214 ~i~i~d~~~~-----~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d-------------------g~i~~wd~ 265 (290)
..++.|.... +....+..... +......++|.|+|.+.++-+.. |.|..++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334454321 22222232221 13447789999999877655521 45666666
Q ss_pred CCCcEEEEEccCCCcEEEEEEecCC
Q 022910 266 TTGKVVSSLVSHTDSIECIGFSRSE 290 (290)
Q Consensus 266 ~~~~~~~~~~~~~~~v~~i~~s~d~ 290 (290)
.+++. ..+...-.....++|+|+|
T Consensus 172 dg~~~-e~~a~G~rnp~Gl~~d~~G 195 (367)
T TIGR02604 172 DGGKL-RVVAHGFQNPYGHSVDSWG 195 (367)
T ss_pred CCCeE-EEEecCcCCCccceECCCC
Confidence 54443 2232222345688888765
No 413
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.07 E-value=0.2 Score=46.30 Aligned_cols=151 Identities=11% Similarity=0.085 Sum_probs=98.8
Q ss_pred CEEEEEECCCCCcEEEEec----------CCCcEEEEEccCCeeeeeecc--ccCCEEEEEECCCCCEEEEEeCCCcEEE
Q 022910 66 EVYSVACSPTDATLVATGG----------GDDKGFFWRINQGDWASEIQG--HKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i 133 (290)
.|.++.|..+...++++|. ..|.|.+|.+...+.+..... -.+.+.++... +|+++|.- ...|++
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrL 852 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGI--NQSVRL 852 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEec--CcEEEE
Confidence 3455567775466777764 357888888877333333222 23445554332 66666655 468999
Q ss_pred EcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc--EEEee-ecCCCCeEEEEEcCCCCEEEEEe
Q 022910 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMF-SGHGSSVTCGDFTPDGKTICTGS 210 (290)
Q Consensus 134 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~-~~~~~~i~~~~~~~~~~~l~~~~ 210 (290)
|++.+.+.++.-..+..++..+...-.+..+++|..-+.+.+.-.+..+ ....- ..+..+.+++.+-.+ ..++.+.
T Consensus 853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~-d~ylgae 931 (1096)
T KOG1897|consen 853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDD-DTYLGAE 931 (1096)
T ss_pred EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecC-ceEEeec
Confidence 9999987776666677889999999899999999988887776555433 33222 235677788777644 4455556
Q ss_pred CCCeEEEEcC
Q 022910 211 DDATLRVWNP 220 (290)
Q Consensus 211 ~dg~i~i~d~ 220 (290)
.+|.+.+...
T Consensus 932 ~~gNlf~v~~ 941 (1096)
T KOG1897|consen 932 NSGNLFTVRK 941 (1096)
T ss_pred ccccEEEEEe
Confidence 6777776543
No 414
>PRK10115 protease 2; Provisional
Probab=97.07 E-value=0.24 Score=45.59 Aligned_cols=194 Identities=14% Similarity=0.076 Sum_probs=101.3
Q ss_pred cCEEEEEECCCCCcEEEE-ecCCC----cEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCC------CcEEE
Q 022910 65 DEVYSVACSPTDATLVAT-GGGDD----KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD------GLVQI 133 (290)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~-~~~dg----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i 133 (290)
-.+..+.|+| ++.+|+. ...+| .|++.++.++..+...-.... ..++|.++++.|+....+ ..|+.
T Consensus 127 ~~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 3567789999 5555544 33333 588899987764322211211 459999999866665432 36888
Q ss_pred EcCCCC--ceEEEEecCCCCEE-EEEEcCCCCEEEEeeC---CCeEEEEECC--cccEEEeeecCCCCeEEEEEcCCCCE
Q 022910 134 WDPSSG--NLKCTLEGPGGGVE-WVSWHPRGHIVLAGSE---DSTVWMWNAD--RAAYLNMFSGHGSSVTCGDFTPDGKT 205 (290)
Q Consensus 134 ~d~~~~--~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~---dg~i~i~d~~--~~~~~~~~~~~~~~i~~~~~~~~~~~ 205 (290)
+++.++ +-...+........ .+..+.++++++..+. ++.+.+|+.. .+.....+.........+. +.. ..
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ 281 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HR 281 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CE
Confidence 888887 44445554333333 2333447776665443 3568888843 3332222222222222222 223 34
Q ss_pred EEEEeC----CCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910 206 ICTGSD----DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (290)
Q Consensus 206 l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~ 265 (290)
|+..+. ...|...++........+.... ....+..+.+. .+.++++...+|.-+++-+
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~-~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPR-ENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeEEECCC-CCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 433332 2245445554222223333321 13367778877 3456666666775444443
No 415
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.05 E-value=0.13 Score=41.98 Aligned_cols=213 Identities=14% Similarity=0.171 Sum_probs=99.3
Q ss_pred EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeec---cccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCce-E
Q 022910 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL-K 142 (290)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~ 142 (290)
..++.|.. ...+++|. .+ +.+.....++.=..+. .-.+....+....++. ...++..|.|+.=. +.++. .
T Consensus 64 l~~I~f~~--~~g~ivG~-~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~~~~G~iy~T~-DgG~tW~ 137 (302)
T PF14870_consen 64 LNSISFDG--NEGWIVGE-PG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS-AELAGDRGAIYRTT-DGGKTWQ 137 (302)
T ss_dssp EEEEEEET--TEEEEEEE-TT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE-EEEEETT--EEEES-STTSSEE
T ss_pred EEEEEecC--CceEEEcC-Cc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc-EEEEcCCCcEEEeC-CCCCCee
Confidence 56677764 34455554 34 3344444333211111 1122333344333333 33334445544332 33332 3
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC-C
Q 022910 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP-K 221 (290)
Q Consensus 143 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~ 221 (290)
.......+.+..+.-+++|.+++++.......-|+--...-...-......|..|.|.|++.+.+++ ..|.|++=+. .
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence 3344455778999999999999998876667788865433333333356889999999998776655 8898988772 2
Q ss_pred CCeeeEE-EeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEcc---CCCcEEEEEEec
Q 022910 222 SGENIHV-IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS---HTDSIECIGFSR 288 (290)
Q Consensus 222 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~~v~~i~~s~ 288 (290)
....... +.......-.+..++|.+++...++|+ .|.+ +.....|+--.+-.. -...++.|.|.+
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~ 285 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVN 285 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEE
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcC
Confidence 2222111 111111334578899999877777665 4444 345555654444432 234566666654
No 416
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.03 E-value=0.23 Score=46.04 Aligned_cols=157 Identities=16% Similarity=0.168 Sum_probs=98.1
Q ss_pred CCEEEEEeCCCcEEEEcCCCCceEEEEecCCCC--------EEEEEEcC----------------CCCEEEEeeCCCeEE
Q 022910 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG--------VEWVSWHP----------------RGHIVLAGSEDSTVW 174 (290)
Q Consensus 119 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------i~~i~~~~----------------~~~~l~~~~~dg~i~ 174 (290)
+..++.++.++.|.-.|..+|+.+-.+...... .+.+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 556777788899999999999888776532210 11233321 244788899999999
Q ss_pred EEECCcccEEEeeecCCCCe-------------EEEEEcC--CCCEEEEEeC----------CCeEEEEcCCCCeeeEEE
Q 022910 175 MWNADRAAYLNMFSGHGSSV-------------TCGDFTP--DGKTICTGSD----------DATLRVWNPKSGENIHVI 229 (290)
Q Consensus 175 i~d~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~ 229 (290)
-.|.++++....+.. .+.+ ..+.-.| .+..+++|+. +|.|+-||.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998866532 1111 1112223 2446666643 688999999999988776
Q ss_pred eCCCC---------------cccCeEEEEEcCCCCEEEEEe------------------CCCcEEEEEcCCCcEEEEEcc
Q 022910 230 RGHPY---------------HTEGLTCLTISADSTLALSGS------------------KDGSVHMVNITTGKVVSSLVS 276 (290)
Q Consensus 230 ~~~~~---------------~~~~v~~~~~~~~~~~l~~~~------------------~dg~i~~wd~~~~~~~~~~~~ 276 (290)
..... ....-..+++++...+++.+. ..+.|.-.|+++|+....++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 53110 001113345555544444422 235677888899998887765
No 417
>PRK13684 Ycf48-like protein; Provisional
Probab=97.02 E-value=0.15 Score=42.58 Aligned_cols=151 Identities=18% Similarity=0.161 Sum_probs=85.3
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEE-EccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceE
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFW-RINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK 142 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 142 (290)
.+.+.++.+.| ++.+++++. .|.+..- +-...........-...++++.+.++++.++++. .|.+++-....+..-
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCcc
Confidence 45678889988 666666654 4544321 2111122222233456789999999988776654 576654334444332
Q ss_pred EEEec----CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee---ecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910 143 CTLEG----PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATL 215 (290)
Q Consensus 143 ~~~~~----~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i 215 (290)
..... ....+..+.+.+++..++++ .+|.+.. ....++.-... .......+.+.|..+++.++ .+..|.|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i 325 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL 325 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence 22221 12357889999877765554 4565543 34444332222 22234677788876666555 4567888
Q ss_pred EEEcC
Q 022910 216 RVWNP 220 (290)
Q Consensus 216 ~i~d~ 220 (290)
..|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 77753
No 418
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.90 E-value=0.072 Score=47.61 Aligned_cols=114 Identities=16% Similarity=0.151 Sum_probs=74.5
Q ss_pred CCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeee-cCCCCeEEEEEc--CCCCEEEEEeCCCeEEEEcCC-----
Q 022910 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFT--PDGKTICTGSDDATLRVWNPK----- 221 (290)
Q Consensus 150 ~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~----- 221 (290)
..++-+.-+.-++..++-+....+.|||.+.+.....-. .....|..+.|. |+++.+++.+-...|.+|-..
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344555555555555555555679999999886443322 357889999996 488888888888999998542
Q ss_pred ----CCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910 222 ----SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (290)
Q Consensus 222 ----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~ 265 (290)
+...+..+........+|....|.++|.+++.+ .+.+.|++-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 112333333222234678899999998766544 347888874
No 419
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.76 E-value=0.0012 Score=59.60 Aligned_cols=99 Identities=9% Similarity=0.102 Sum_probs=59.0
Q ss_pred eeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccC--Ceeeee-----eccccCCEEEEEECC---CCCEEEEEeCC
Q 022910 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--GDWASE-----IQGHKDSVSSLAFSM---DGQLLASGGLD 128 (290)
Q Consensus 59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~-----~~~~~~~i~~~~~~~---~~~~l~~~~~d 128 (290)
.++|..+.|-.++|-..+-..++ ..-|.+.+|++.- |+.... .......+.-+.|+| +..++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 45566777777777643322222 3336788998763 333222 223334556667765 55678888888
Q ss_pred CcEEEEcCCCCceEEEEecCCCCEEEEEEcCC
Q 022910 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR 160 (290)
Q Consensus 129 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 160 (290)
+.+++..+.+... ..+.+|...+..++|-..
T Consensus 205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~ 235 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAE 235 (1283)
T ss_pred CceeEeeechHHH-HHHHhcCCCcccHHHHhh
Confidence 9999887765433 344557666666665433
No 420
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.75 E-value=0.15 Score=45.72 Aligned_cols=111 Identities=20% Similarity=0.255 Sum_probs=72.3
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEe-cCCCCEEEEEEc--CCCCEEEEeeCCCeEEEEECCc-----
Q 022910 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWH--PRGHIVLAGSEDSTVWMWNADR----- 180 (290)
Q Consensus 109 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~--~~~~~l~~~~~dg~i~i~d~~~----- 180 (290)
..+-+.-+.-++..++-+....+.|||...+.....-. ...+.|.++.|. |++..+++.+..+.|.+|--..
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444445545544444555689999999887544333 346789999995 5788888888889999985321
Q ss_pred ----ccEEEee--ecC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCC
Q 022910 181 ----AAYLNMF--SGH-GSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221 (290)
Q Consensus 181 ----~~~~~~~--~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 221 (290)
..+++.+ ..+ ..+|....|.++|.+++.+ ...+.|+|-.
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 1223332 222 3578999999988655544 3578888754
No 421
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.75 E-value=0.37 Score=44.70 Aligned_cols=172 Identities=17% Similarity=0.157 Sum_probs=107.4
Q ss_pred EEEEEccCCeeeeeecc--c--cCCEEEEEECCC-CCEEEEEeC----------CCcEEEEcCCCCceEEEEec--CCCC
Q 022910 89 GFFWRINQGDWASEIQG--H--KDSVSSLAFSMD-GQLLASGGL----------DGLVQIWDPSSGNLKCTLEG--PGGG 151 (290)
Q Consensus 89 i~iw~~~~~~~~~~~~~--~--~~~i~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~--~~~~ 151 (290)
++++|-++.+.....+- . -..|.++.|..+ +.++++|.. .|.|.|+.....+.+..... -.+.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 66677666555443321 1 123455567766 667777753 47888888777433333322 2234
Q ss_pred EEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCC--CCeeeEEE
Q 022910 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK--SGENIHVI 229 (290)
Q Consensus 152 i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~ 229 (290)
+.++..- +|+++|. -+..|++|+..+.+.++.-..+..++..+...-.+..+++|..=+.+.+.-.+ .|.....-
T Consensus 832 v~aL~~f-ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evA 908 (1096)
T KOG1897|consen 832 VYALVEF-NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVA 908 (1096)
T ss_pred eeehhhh-CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEee
Confidence 4444322 5655554 45689999999887777777788899999998899999999887777665443 33333222
Q ss_pred eCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910 230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (290)
Q Consensus 230 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 266 (290)
+ ..+....+++.+-.+. .++.+..+|.+++....
T Consensus 909 r--D~~p~Wmtaveil~~d-~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 909 R--DYNPNWMTAVEILDDD-TYLGAENSGNLFTVRKD 942 (1096)
T ss_pred h--hhCccceeeEEEecCc-eEEeecccccEEEEEec
Confidence 2 2266677777776544 44456667777776543
No 422
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.74 E-value=0.29 Score=41.46 Aligned_cols=196 Identities=19% Similarity=0.177 Sum_probs=111.1
Q ss_pred EEEEecCCCcEEEEEccCCeeeeeeccc--cCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCC-CEEEE
Q 022910 79 LVATGGGDDKGFFWRINQGDWASEIQGH--KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG-GVEWV 155 (290)
Q Consensus 79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~i 155 (290)
.++++..+|.|.-.|..+++.+.....- ...+..-.+..+|+ |+.++.+|.++.+|..+++.+........ .+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 3445577888888888888766543321 12222222323555 78888899999999989998888776651 11111
Q ss_pred EEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCC---CCeEEEEEcCCCCEEEEEeC--CCeEEEEcCCCCeeeEEEe
Q 022910 156 SWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG---SSVTCGDFTPDGKTICTGSD--DATLRVWNPKSGENIHVIR 230 (290)
Q Consensus 156 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~ 230 (290)
..- ....++.++.++.+...+..+++..-...... ..+..--. .....++.+.. ++.+.-+|+.++......+
T Consensus 149 ~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 149 PVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred cEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 111 22244444477899999988887765543221 11111001 12334555555 6678888888887766543
Q ss_pred CCCCcc-cCe--E-EEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEEccC
Q 022910 231 GHPYHT-EGL--T-CLTISA--DSTLALSGSKDGSVHMVNITTGKVVSSLVSH 277 (290)
Q Consensus 231 ~~~~~~-~~v--~-~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 277 (290)
...... ..+ . .+..-+ -+..++.++.++.+...+..+++.+.++...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 211011 101 0 111000 1223356677888999999999988888763
No 423
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.73 E-value=0.21 Score=39.77 Aligned_cols=147 Identities=19% Similarity=0.202 Sum_probs=88.2
Q ss_pred CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEc-CCCCceE-E
Q 022910 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-PSSGNLK-C 143 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~-~ 143 (290)
.+.+.++++++..+.+....++.-.||-...+.....+. ....+....|++++...+....+...+++. ...+... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 688999999555454444233444444444433333322 223778889999987766666666666663 3333322 1
Q ss_pred EEecC--CCCEEEEEEcCCCCEEEEee---CCCeEEEEECCc---c------cEEEeeecCCCCeEEEEEcCCCCEEEEE
Q 022910 144 TLEGP--GGGVEWVSWHPRGHIVLAGS---EDSTVWMWNADR---A------AYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (290)
Q Consensus 144 ~~~~~--~~~i~~i~~~~~~~~l~~~~---~dg~i~i~d~~~---~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 209 (290)
.+... .+.|..+.++|+|..++... .++.|.+--+.. + ............+..+.|.+++.+++.+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence 22211 12799999999999877765 347777765432 2 1122222335688999999998877766
Q ss_pred eCCC
Q 022910 210 SDDA 213 (290)
Q Consensus 210 ~~dg 213 (290)
...+
T Consensus 184 ~~~~ 187 (253)
T PF10647_consen 184 RSAG 187 (253)
T ss_pred CCCC
Confidence 5544
No 424
>PHA03098 kelch-like protein; Provisional
Probab=96.73 E-value=0.038 Score=49.31 Aligned_cols=143 Identities=14% Similarity=0.212 Sum_probs=71.1
Q ss_pred CCcEEEEecCC-----CcEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCC------CcEEEEcCCCCceE
Q 022910 76 DATLVATGGGD-----DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD------GLVQIWDPSSGNLK 142 (290)
Q Consensus 76 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~ 142 (290)
++.+++.|+.+ ..+..||..+.+.... +....... +++. -+++.++.|+.. ..+..||+.+++..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 44566677754 2467788776654332 21111111 1222 256666666632 45788998876543
Q ss_pred EEEecCCCC-EEEEEEcCCCCEEEEeeCC--------CeEEEEECCcccEEEe--eecCCCCeEEEEEcCCCCEEEEEeC
Q 022910 143 CTLEGPGGG-VEWVSWHPRGHIVLAGSED--------STVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSD 211 (290)
Q Consensus 143 ~~~~~~~~~-i~~i~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~ 211 (290)
..-...... -.+++ ..++..++.|+.. ..+.+||..+.+-... +.........+.+ ++.+++.|+.
T Consensus 420 ~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~ 496 (534)
T PHA03098 420 KGSPLPISHYGGCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGD 496 (534)
T ss_pred ecCCCCccccCceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCC
Confidence 221111110 11122 2256677777643 2388899887654322 1111111122222 5666667665
Q ss_pred C-----CeEEEEcCCCC
Q 022910 212 D-----ATLRVWNPKSG 223 (290)
Q Consensus 212 d-----g~i~i~d~~~~ 223 (290)
+ ..|.+||..+.
T Consensus 497 ~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 497 KYEYYINEIEVYDDKTN 513 (534)
T ss_pred cCCcccceeEEEeCCCC
Confidence 4 46778887654
No 425
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.72 E-value=0.21 Score=39.50 Aligned_cols=196 Identities=16% Similarity=0.179 Sum_probs=126.2
Q ss_pred CEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEE
Q 022910 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL 145 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 145 (290)
.-+.++-.| ++...++++..|.|--.|..+++....--+....-..|..-|++..-++-+.. -|.-.+-++.+.. ++
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt-~f 139 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT-RF 139 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE-Ee
Confidence 446677777 67777788888888888888888666544455566778888988866664433 4555565555432 22
Q ss_pred ----ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcC
Q 022910 146 ----EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-HGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (290)
Q Consensus 146 ----~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 220 (290)
...........|.+.|++.+++.. |.---.|-.+ ..++.+.. .....+.|+..|+|...++.-.+..|-..|.
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp 217 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDP 217 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccc
Confidence 223456788899999998888763 2111111111 12223322 3345678899999999998888888888898
Q ss_pred CCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 267 (290)
.++.. ..+............+-.+|.|+.-++....+.+..+|-..
T Consensus 218 ~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 218 FAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred ccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 87733 34443332234455555667888887777777777777543
No 426
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.17 Score=38.27 Aligned_cols=175 Identities=13% Similarity=0.091 Sum_probs=101.0
Q ss_pred CCcEEEEecC--CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceEEEEecCCCCE
Q 022910 76 DATLVATGGG--DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCTLEGPGGGV 152 (290)
Q Consensus 76 ~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i 152 (290)
++.++.+.+. ...|++|++.+++.+...+-....+..=-...-+.++ +..-.+|.-.++|..+.+.+..+.... .-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~G-eG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEG-EG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCC-cc
Confidence 4466666544 3469999999988776544221122111111123332 233458888999999988887776433 24
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec--CCCC---eEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeE
Q 022910 153 EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--HGSS---VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227 (290)
Q Consensus 153 ~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~---i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 227 (290)
+.++. ++..|+.++...+++.-|.++.....++.. ...+ +.-+.|- +|...+-.-.+-.|...+..+|+.+.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 45543 566677777777888888766544333321 1222 2334443 45555544555566677777777655
Q ss_pred EEeCC---------CCcccCeEEEEEcCCC-CEEEEE
Q 022910 228 VIRGH---------PYHTEGLTCLTISADS-TLALSG 254 (290)
Q Consensus 228 ~~~~~---------~~~~~~v~~~~~~~~~-~~l~~~ 254 (290)
.+... ..+....+.+++.|++ +++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 44322 1244567889999976 566665
No 427
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.68 E-value=0.18 Score=45.71 Aligned_cols=113 Identities=12% Similarity=0.169 Sum_probs=74.3
Q ss_pred EEEEEEcC--CCCEEEEeeCCCeEEEEECCcc--------------------cEEEeeecCCCCeEEEEEc--CCCCEEE
Q 022910 152 VEWVSWHP--RGHIVLAGSEDSTVWMWNADRA--------------------AYLNMFSGHGSSVTCGDFT--PDGKTIC 207 (290)
Q Consensus 152 i~~i~~~~--~~~~l~~~~~dg~i~i~d~~~~--------------------~~~~~~~~~~~~i~~~~~~--~~~~~l~ 207 (290)
|+.|.... ....|+.+..||.|.+|.+++- ++...+. ....+++++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 55554433 3458899999999999976321 0111122 34578999998 7888999
Q ss_pred EEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCC---C---EEEEEeCCCcEEEEEc
Q 022910 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS---T---LALSGSKDGSVHMVNI 265 (290)
Q Consensus 208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~~wd~ 265 (290)
+++....|.||-...............+...|.+++|-++. . .|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99988888887554321111111111266778999997732 2 7888889999999887
No 428
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.31 Score=38.94 Aligned_cols=153 Identities=12% Similarity=0.092 Sum_probs=97.8
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEec-CC-CCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc---
Q 022910 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-PG-GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--- 182 (290)
Q Consensus 108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~-~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--- 182 (290)
+-+..+.++ +++.+.+..+.-++|.|+.+......... .. +-..++.. .|++..++..+.-+.++|+...+
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 345566664 55777777777799999987654333221 12 33344444 68899999877778888887643
Q ss_pred EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 022910 183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262 (290)
Q Consensus 183 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 262 (290)
...++.........++.| |++-+.+..|+-+.+.|+.+......+... .....+.++..+++..+++... --+.+
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsdnr~y~vvy~--egvli 237 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSDNRAYLVVYD--EGVLI 237 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecCCeeEEEEcc--cceEE
Confidence 334444444444566665 778888889999999999876554433322 2344788888887766666543 34556
Q ss_pred EEcCCCc
Q 022910 263 VNITTGK 269 (290)
Q Consensus 263 wd~~~~~ 269 (290)
-|..+.+
T Consensus 238 vd~s~~s 244 (370)
T COG5276 238 VDVSGPS 244 (370)
T ss_pred EecCCCC
Confidence 6665544
No 429
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.27 Score=37.24 Aligned_cols=168 Identities=18% Similarity=0.168 Sum_probs=99.5
Q ss_pred CCCEEEEEeC--CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEeeCCCeEEEEECCcccEEEeeecCCCCe
Q 022910 118 DGQLLASGGL--DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSV 194 (290)
Q Consensus 118 ~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i 194 (290)
++.++.+.+. ...|++|++.+++.+...+.....+..=-...-+. ..+..-.+|.-.++|.++.+.+..+.- .+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 4445555543 45799999999988766543311111111111233 333345678899999999888877663 3344
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCC--CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 022910 195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP--YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS 272 (290)
Q Consensus 195 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 272 (290)
+.++. ++..|+.+....+++.-|..+.....++.... ..-..++-+.|- +|.++|-.-....|...+..+|+.+.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 55554 55668777777889988887765444333210 011223344443 56666666666778888888888776
Q ss_pred EEcc------------CCCcEEEEEEecC
Q 022910 273 SLVS------------HTDSIECIGFSRS 289 (290)
Q Consensus 273 ~~~~------------~~~~v~~i~~s~d 289 (290)
.+.. |.+..++|++-|+
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~ 239 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQ 239 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCc
Confidence 6542 2335567776664
No 430
>PLN02193 nitrile-specifier protein
Probab=96.38 E-value=0.62 Score=40.91 Aligned_cols=186 Identities=11% Similarity=0.174 Sum_probs=90.1
Q ss_pred CcEEEEecCC-------CcEEEEEccCCeeeeeecc----ccCCE-EEEEECCCCCEEEEEeCC-----CcEEEEcCCCC
Q 022910 77 ATLVATGGGD-------DKGFFWRINQGDWASEIQG----HKDSV-SSLAFSMDGQLLASGGLD-----GLVQIWDPSSG 139 (290)
Q Consensus 77 ~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~----~~~~i-~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 139 (290)
..+++.|+.+ ..+.+||+.+.+....-.. ..... .+++ .-++..++.|+.+ ..+.+||+.+.
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v-~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMV-SIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEE-EECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 3455566642 2366778777654431110 00111 1121 1245566666654 35888898876
Q ss_pred ceEEEEec---CCC-CEEEEEEcCCCCEEEEeeCCC-----eEEEEECCcccEEEeee-----cCCCCeEEEEEcCCCCE
Q 022910 140 NLKCTLEG---PGG-GVEWVSWHPRGHIVLAGSEDS-----TVWMWNADRAAYLNMFS-----GHGSSVTCGDFTPDGKT 205 (290)
Q Consensus 140 ~~~~~~~~---~~~-~i~~i~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~ 205 (290)
+....-.. +.. .-.+++. -++++++.|+.++ .+..||+.+.+-...-. ........+.+ ++++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~--~gki 331 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV--QGKV 331 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE--CCcE
Confidence 54332111 111 1112222 2566777776543 46778887665332111 01111112222 5667
Q ss_pred EEEEeCC----CeEEEEcCCCCeeeEEEeCC---CCcccCeEEEEEcCCCCEEEEEeCC--------------CcEEEEE
Q 022910 206 ICTGSDD----ATLRVWNPKSGENIHVIRGH---PYHTEGLTCLTISADSTLALSGSKD--------------GSVHMVN 264 (290)
Q Consensus 206 l~~~~~d----g~i~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~~wd 264 (290)
++.++.+ ..+.+||+.+.+= ..+... +.......++.+ ++++++.|+.. ..+.+||
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W-~~~~~~g~~P~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D 408 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKW-TQVETFGVRPSERSVFASAAV--GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALD 408 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEE-EEeccCCCCCCCcceeEEEEE--CCEEEEECCccCCccccccCccceeccEEEEE
Confidence 7777655 4588999987542 222211 111111222222 56777777753 2478888
Q ss_pred cCCCc
Q 022910 265 ITTGK 269 (290)
Q Consensus 265 ~~~~~ 269 (290)
+.+.+
T Consensus 409 ~~t~~ 413 (470)
T PLN02193 409 TETLQ 413 (470)
T ss_pred cCcCE
Confidence 87654
No 431
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.36 E-value=0.28 Score=45.06 Aligned_cols=71 Identities=24% Similarity=0.450 Sum_probs=44.0
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEcCCC----------Cce--EE-EE--------ecCCCCEEEEEEcCC---CCE
Q 022910 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSS----------GNL--KC-TL--------EGPGGGVEWVSWHPR---GHI 163 (290)
Q Consensus 108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~--~~-~~--------~~~~~~i~~i~~~~~---~~~ 163 (290)
-.|..+.++|.|.+++..+..| |.|..+.. ++. .. ++ ......|..+.|||. +.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688899999999999988766 55544431 111 11 11 112335667777774 356
Q ss_pred EEEeeCCCeEEEEECC
Q 022910 164 VLAGSEDSTVWMWNAD 179 (290)
Q Consensus 164 l~~~~~dg~i~i~d~~ 179 (290)
|++-+.|+++++||+.
T Consensus 164 l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEecCCEEEEEecC
Confidence 6677777777777764
No 432
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.41 Score=43.13 Aligned_cols=182 Identities=12% Similarity=0.144 Sum_probs=93.7
Q ss_pred CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEE---EecCCCCEEEEEEcCCCC
Q 022910 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT---LEGPGGGVEWVSWHPRGH 162 (290)
Q Consensus 86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~i~~i~~~~~~~ 162 (290)
...|+||++. |+.+..+......+-.+.|+.+. .|++...+|++++|++........ +......|..+.+..+|-
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 3568888865 55555544444478899998655 466668899999999854322211 112223344444444553
Q ss_pred EEEEeeCCCeEEEEECCcccEEEeeec---CCCCeEEEEEcCCCC---EEEEEe-CCC-eEEEEcCCCCeeeEEEeCCCC
Q 022910 163 IVLAGSEDSTVWMWNADRAAYLNMFSG---HGSSVTCGDFTPDGK---TICTGS-DDA-TLRVWNPKSGENIHVIRGHPY 234 (290)
Q Consensus 163 ~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~---~l~~~~-~dg-~i~i~d~~~~~~~~~~~~~~~ 234 (290)
.++ ..+|.+.+-.--....++++.. ...+-.|-...+++. .++-.. ..+ .+..-+....+. ..+..
T Consensus 141 avl--t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~-~~~~~--- 214 (829)
T KOG2280|consen 141 AVL--TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQL-HALSW--- 214 (829)
T ss_pred EEE--ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccc-cccCC---
Confidence 333 3345544433222212222222 111112222222221 111110 111 011111111111 11111
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEEc
Q 022910 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (290)
Q Consensus 235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 275 (290)
..+.+..+..||+.++|+--...|.|.+-+....+.+..+.
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 23568889999999999999999999999888777666665
No 433
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.34 E-value=0.57 Score=39.99 Aligned_cols=149 Identities=13% Similarity=0.183 Sum_probs=83.0
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc-----EE
Q 022910 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-----YL 184 (290)
Q Consensus 110 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~ 184 (290)
...+..++++.+++.+.....++-|+--...-...-......++.+.+.+++..++++. .|.+.. ....++ ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~-~G~l~~-S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTR-GGGLYV-SKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeC-CceEEE-ecCCCCcccccce
Confidence 34455677777777665433333344221111112222345689999999988777664 455443 333332 12
Q ss_pred Eeeec--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 022910 185 NMFSG--HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262 (290)
Q Consensus 185 ~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 262 (290)
..... ....+..+.|.+++..+++ +..|.+... ...++...............+.+.|.++++.+++| .+|.|..
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~ 395 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLR 395 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEE
Confidence 22221 2245888999887765555 467766555 34455444433222235668899998776666555 6777765
Q ss_pred E
Q 022910 263 V 263 (290)
Q Consensus 263 w 263 (290)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 5
No 434
>PHA02790 Kelch-like protein; Provisional
Probab=96.33 E-value=0.16 Score=44.64 Aligned_cols=139 Identities=12% Similarity=0.095 Sum_probs=69.7
Q ss_pred CCcEEEEecCC--CcEEEEEccCCeeeee--eccccCCEEEEEECCCCCEEEEEeCCC---cEEEEcCCCCceEEEEec-
Q 022910 76 DATLVATGGGD--DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLDG---LVQIWDPSSGNLKCTLEG- 147 (290)
Q Consensus 76 ~~~~l~~~~~d--g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~- 147 (290)
++.+.+.|+.+ ..+..|+..+++.... +.........+.+ +++..+.|+.++ .+..||..+.+....-..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 55667777753 3577788766554332 2211111222222 677777776543 467888877654332111
Q ss_pred -CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEE--eeecCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEc
Q 022910 148 -PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDD-----ATLRVWN 219 (290)
Q Consensus 148 -~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d 219 (290)
+......+ .-++.+.+.| |.+.+||.++.+-.. .+.........+.+ ++++.++|+.+ ..|..||
T Consensus 396 ~~r~~~~~~--~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 396 YPHYKSCAL--VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred CccccceEE--EECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEE
Confidence 11111122 2256666666 457788887765432 22211222222222 56677777654 2455666
Q ss_pred CCCC
Q 022910 220 PKSG 223 (290)
Q Consensus 220 ~~~~ 223 (290)
..++
T Consensus 469 ~~~~ 472 (480)
T PHA02790 469 NRTY 472 (480)
T ss_pred CCCC
Confidence 6543
No 435
>PLN02153 epithiospecifier protein
Probab=96.18 E-value=0.63 Score=38.95 Aligned_cols=187 Identities=13% Similarity=0.163 Sum_probs=89.6
Q ss_pred CCcEEEEecCC-------CcEEEEEccCCeeeeeecc---ccC---CEEEEEECCCCCEEEEEeCC-----CcEEEEcCC
Q 022910 76 DATLVATGGGD-------DKGFFWRINQGDWASEIQG---HKD---SVSSLAFSMDGQLLASGGLD-----GLVQIWDPS 137 (290)
Q Consensus 76 ~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~---~~~---~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~ 137 (290)
++.+++.|+.+ ..+.+||+.+.+....... ... ....+.+ +++.++.|+.+ ..+.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 44677777653 2577888877654432110 110 1222333 55666666643 357788887
Q ss_pred CCceEEEEec-----CCCCEEEEEEcCCCCEEEEeeCC-----------CeEEEEECCcccEEEeeec-----CCCCeEE
Q 022910 138 SGNLKCTLEG-----PGGGVEWVSWHPRGHIVLAGSED-----------STVWMWNADRAAYLNMFSG-----HGSSVTC 196 (290)
Q Consensus 138 ~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~-----~~~~i~~ 196 (290)
+.+-...-.. ........+..-++++++.|+.+ ..+.+||+.+.+-...-.. .......
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~ 189 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGF 189 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceE
Confidence 7654321110 11111111222356677777753 2477888877643321110 1111112
Q ss_pred EEEcCCCCEEEEEeCC-------------CeEEEEcCCCCeeeEEEeC---CCCcccCeEEEEEcCCCCEEEEEeCC---
Q 022910 197 GDFTPDGKTICTGSDD-------------ATLRVWNPKSGENIHVIRG---HPYHTEGLTCLTISADSTLALSGSKD--- 257 (290)
Q Consensus 197 ~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d--- 257 (290)
..+ ++++++.++.+ ..|.+||+.+.+= ..+.. .+........+.+ ++++++.|+..
T Consensus 190 ~~~--~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W-~~~~~~g~~P~~r~~~~~~~~--~~~iyv~GG~~~~~ 264 (341)
T PLN02153 190 AVV--QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW-TEVETTGAKPSARSVFAHAVV--GKYIIIFGGEVWPD 264 (341)
T ss_pred EEE--CCeEEEEeccccccccCCccceecCceEEEEcCCCcE-EeccccCCCCCCcceeeeEEE--CCEEEEECcccCCc
Confidence 222 45665655432 3588898876532 12211 1111111222222 56777777742
Q ss_pred -----------CcEEEEEcCCCc
Q 022910 258 -----------GSVHMVNITTGK 269 (290)
Q Consensus 258 -----------g~i~~wd~~~~~ 269 (290)
..|..||+.+.+
T Consensus 265 ~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 265 LKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred cccccccccccccEEEEEcCccE
Confidence 257888876543
No 436
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.17 E-value=0.00061 Score=57.26 Aligned_cols=138 Identities=17% Similarity=0.327 Sum_probs=95.0
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEE-EeeCCCeEEEEECCcccEEEeee
Q 022910 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL-AGSEDSTVWMWNADRAAYLNMFS 188 (290)
Q Consensus 110 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~ 188 (290)
.....|.|.+.-++.++.+..+..||-. ++...... ..+....++|..++..++ .+-..+.+++|++.+......-.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 3455678877778888888889999854 44443433 344566788888877554 45667899999997653222111
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEE
Q 022910 189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (290)
Q Consensus 189 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 252 (290)
+....-.-+.|++....++.+...|.+.||+..+.+.+-.... |...+++++|.+.+..+.
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gk---h~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGK---HQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcc---cccceeEEEecccceeee
Confidence 2222222377999889999999999999999887765544433 677889999988765444
No 437
>PRK10115 protease 2; Provisional
Probab=96.13 E-value=1.1 Score=41.38 Aligned_cols=111 Identities=9% Similarity=0.069 Sum_probs=68.7
Q ss_pred CCEEEEEECCCCCEEEEEeC-----CCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCC------CeEEEE
Q 022910 108 DSVSSLAFSMDGQLLASGGL-----DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED------STVWMW 176 (290)
Q Consensus 108 ~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~i~ 176 (290)
-.+..+.|+|++++|+.+.. ...|++.++.++..+...-.... ..++|.++++.|+.+..+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34677889999998887633 24688999988864322211111 459999998866665432 368888
Q ss_pred ECCcc--cEEEeeecCCCCeE-EEEEcCCCCEEEEEeC---CCeEEEEcC
Q 022910 177 NADRA--AYLNMFSGHGSSVT-CGDFTPDGKTICTGSD---DATLRVWNP 220 (290)
Q Consensus 177 d~~~~--~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~---dg~i~i~d~ 220 (290)
++.++ +....+........ .+..+.++++++..+. ++.+.+|+.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 88877 33334443333333 3333447777665443 457888884
No 438
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.13 E-value=0.00073 Score=56.80 Aligned_cols=137 Identities=12% Similarity=0.192 Sum_probs=94.4
Q ss_pred EEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCE-EEEEeCCCcEEEEcCCCCceEEEE
Q 022910 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL-LASGGLDGLVQIWDPSSGNLKCTL 145 (290)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~ 145 (290)
-....|-|.+.+ ++.++.+-.+..||-.. +...... ..+....++|..++.. ++.+-..+.+.+|++.+....+.-
T Consensus 37 pi~~~w~~e~~n-lavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHN-LAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred cceeeEecCCCc-eehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 345567885666 66677788888898553 3333333 3455677889887775 444556789999999865322111
Q ss_pred ecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEE
Q 022910 146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206 (290)
Q Consensus 146 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 206 (290)
.+....-.-+.|++....++.+...|.+.+++..+.+.+...-.|...++++++.+.+..+
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI 174 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence 1112222237899988899999999999999998877666665588899999999876443
No 439
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.12 E-value=0.65 Score=38.59 Aligned_cols=146 Identities=17% Similarity=0.280 Sum_probs=86.7
Q ss_pred cCCEEEEEECCCCCEEEEEeCCCc------EEEEcCCC--C--ceE-----EEEecCCC--------CEEEEEEcCCCCE
Q 022910 107 KDSVSSLAFSMDGQLLASGGLDGL------VQIWDPSS--G--NLK-----CTLEGPGG--------GVEWVSWHPRGHI 163 (290)
Q Consensus 107 ~~~i~~~~~~~~~~~l~~~~~dg~------i~i~d~~~--~--~~~-----~~~~~~~~--------~i~~i~~~~~~~~ 163 (290)
-+.++.+.+.+++..+++.+.+|. +..+.+.. + ..+ ..+....+ -.-+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356788888866666666677777 65555543 1 111 11121211 2346788777877
Q ss_pred EEEeeCC------CeEEEEECCcccEEEeee---------------cCCCCeEEEEEcCCCCEEEEEeCC-----C----
Q 022910 164 VLAGSED------STVWMWNADRAAYLNMFS---------------GHGSSVTCGDFTPDGKTICTGSDD-----A---- 213 (290)
Q Consensus 164 l~~~~~d------g~i~i~d~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~l~~~~~d-----g---- 213 (290)
+++.-.+ ..|+.++.. ++.+..+. ..+...-+|+++|+|+.|+++... +
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7777666 788888876 54433331 134568899999999977665432 2
Q ss_pred -------eEEEEcCCC-Ceee--EEEeCCC----CcccCeEEEEEcCCCCEEEE
Q 022910 214 -------TLRVWNPKS-GENI--HVIRGHP----YHTEGLTCLTISADSTLALS 253 (290)
Q Consensus 214 -------~i~i~d~~~-~~~~--~~~~~~~----~~~~~v~~~~~~~~~~~l~~ 253 (290)
.|..||..+ +... ..+.... .....++.+.+-+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 244456654 2222 2222211 03467888999999987765
No 440
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=96.12 E-value=0.79 Score=40.30 Aligned_cols=142 Identities=17% Similarity=0.207 Sum_probs=70.6
Q ss_pred CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEEEecCCCC---EEEEEEcCCCC
Q 022910 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG---VEWVSWHPRGH 162 (290)
Q Consensus 86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---i~~i~~~~~~~ 162 (290)
.+...++|.. |..+..+.........+...++|.+++... ..++.+|+. |+.+..+....+. -..+..-|+|+
T Consensus 127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn 202 (477)
T PF05935_consen 127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGN 202 (477)
T ss_dssp EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCC
Confidence 3445555533 344444332222221266778888777655 788899985 6665555443322 24577788999
Q ss_pred EEEEeeC-------------CCeEEEEECCcccEEEeeec--C-------------------------CCCeEEEEEcC-
Q 022910 163 IVLAGSE-------------DSTVWMWNADRAAYLNMFSG--H-------------------------GSSVTCGDFTP- 201 (290)
Q Consensus 163 ~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~--~-------------------------~~~i~~~~~~~- 201 (290)
+|+.+.. .-.|..+| .+++.+..+.. | =..+.++.+.+
T Consensus 203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 8888772 12355555 55554443211 0 02478999999
Q ss_pred CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCC
Q 022910 202 DGKTICTGSDDATLRVWNPKSGENIHVIRGH 232 (290)
Q Consensus 202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 232 (290)
++.+|+++-.-..|...|.++++....+..+
T Consensus 282 dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 282 DDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp TTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 4444455544558999998888887777643
No 441
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=96.03 E-value=0.83 Score=40.17 Aligned_cols=147 Identities=14% Similarity=0.167 Sum_probs=78.7
Q ss_pred CCCcEEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCC---eEEEEEcCCC
Q 022910 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS---VTCGDFTPDG 203 (290)
Q Consensus 127 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---i~~~~~~~~~ 203 (290)
..+...++|.. |..+..+.........+...++|.+++... ..++.+|+. |+.+..+...... =..+...|+|
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence 35566677743 555544443332222256677888776655 789999985 5555544432221 2456678899
Q ss_pred CEEEEEeC-------------CCeEEEEcCCCCeeeEEEeCCCC------------------------cccCeEEEEEcC
Q 022910 204 KTICTGSD-------------DATLRVWNPKSGENIHVIRGHPY------------------------HTEGLTCLTISA 246 (290)
Q Consensus 204 ~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~~~~------------------------~~~~v~~~~~~~ 246 (290)
++|+.+.. .-.|..+| .+|+.+..+..... .=..++++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 99987771 12366667 67776655432110 002378999998
Q ss_pred -CCCEEEEEeCCCcEEEEEcCCCcEEEEEccCC
Q 022910 247 -DSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278 (290)
Q Consensus 247 -~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 278 (290)
++.+|+++-.-..|...|.++++....+-.+.
T Consensus 281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 66777777666789999999999988887654
No 442
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.99 E-value=0.8 Score=38.80 Aligned_cols=151 Identities=19% Similarity=0.192 Sum_probs=87.0
Q ss_pred EEEEEeCCCcEEEEcCCCCceEEEEecCC--CCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCC-CeEEE
Q 022910 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPG--GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-SVTCG 197 (290)
Q Consensus 121 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~ 197 (290)
.++++..+|.|.-.|..+++.+-...... ..+..-.+..+|+ +++++.+|.++.+|.++++.+-....... .+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 45556778889999998888654333221 1122222222554 88888889999999988888877765541 11111
Q ss_pred EEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCcEEEEE
Q 022910 198 DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK--DGSVHMVNITTGKVVSSL 274 (290)
Q Consensus 198 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~ 274 (290)
..- ....++.++.++.+...+..++...............+..-... ....++.+.. ++.+.-.+..+|......
T Consensus 149 ~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 149 PVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred cEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeeee
Confidence 111 22344445578999999999998876655321000001000001 2234444444 567777888788776664
No 443
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.95 E-value=0.34 Score=33.93 Aligned_cols=113 Identities=9% Similarity=0.197 Sum_probs=72.2
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEECCccc--------EEEeeecCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEcCC
Q 022910 155 VSWHPRGHIVLAGSEDSTVWMWNADRAA--------YLNMFSGHGSSVTCGDFTP-----DGKTICTGSDDATLRVWNPK 221 (290)
Q Consensus 155 i~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~ 221 (290)
-.|.....-|++++..|.|.|++..... .++.+. ....|++|+-.+ ....|+.|+. ..|..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 4566666788889999999999876432 233333 456777776544 3466777765 468899998
Q ss_pred CCeeeEEEeCCCCcccCeEEEEEcC----CCCEEEEEeCCCcEEEEEcCCCcEEEEE
Q 022910 222 SGENIHVIRGHPYHTEGLTCLTISA----DSTLALSGSKDGSVHMVNITTGKVVSSL 274 (290)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 274 (290)
.+.-+.... ....++++.+-. ...++++ +.+..|.-||..-.+...+.
T Consensus 82 ~N~d~Fyke----~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 NNSDLFYKE----VPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCchhhhhh----CccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEEEe
Confidence 776544333 456677777743 2344444 45667888886655555544
No 444
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.94 E-value=0.051 Score=29.66 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=27.2
Q ss_pred cCEEEEEECCCCC--cEEEEecCCCcEEEEEccC
Q 022910 65 DEVYSVACSPTDA--TLVATGGGDDKGFFWRINQ 96 (290)
Q Consensus 65 ~~v~~~~~~~~~~--~~l~~~~~dg~i~iw~~~~ 96 (290)
++|.++.|+|... .+|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5789999998555 6888888889999999985
No 445
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.90 E-value=1.4 Score=40.66 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=50.3
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccC----------Ce--eeee-e--------ccccCCEEEEEECCC---C
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQ----------GD--WASE-I--------QGHKDSVSSLAFSMD---G 119 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----------~~--~~~~-~--------~~~~~~i~~~~~~~~---~ 119 (290)
.-.|..|.++| .+.++|..|..| |.|-.+.. ++ ...+ + ..+...|..+.|+|. +
T Consensus 84 ~f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 84 LFEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred ceeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 45789999999 667777666655 44444421 11 1111 1 124457899999996 4
Q ss_pred CEEEEEeCCCcEEEEcCCCC
Q 022910 120 QLLASGGLDGLVQIWDPSSG 139 (290)
Q Consensus 120 ~~l~~~~~dg~i~i~d~~~~ 139 (290)
.+|++-+.|+++++||+...
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CeEEEEecCCEEEEEecCCC
Confidence 78999999999999999754
No 446
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.38 Score=40.89 Aligned_cols=138 Identities=13% Similarity=0.144 Sum_probs=85.4
Q ss_pred EEEEECCCCCcEEEEecCCCcEEEEEccCCe--eeeee-ccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceE--
Q 022910 68 YSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEI-QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK-- 142 (290)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-- 142 (290)
+.+-|...+..++++- .|.+.=|-+.... ..-.+ ....++|.++.|++|.+.||+--.+.+|.+++....+..
T Consensus 26 ngvFfDDaNkqlfavr--SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVR--SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred cceeeccCcceEEEEe--cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 3444443233444443 3556666655432 11122 234679999999999999999999999999998443322
Q ss_pred --EEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCc-ccEEEeeecCCCCeEEEEEcCCCCEEEEE
Q 022910 143 --CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-AAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (290)
Q Consensus 143 --~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 209 (290)
...+.....|....|+.. .-+|.....| +-+|-+.. .+.++..+.++..|.-..|.++.+.++.+
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred HHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 223334456889999865 5566655545 45554332 23455556677788888888877665443
No 447
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.76 Score=36.87 Aligned_cols=157 Identities=15% Similarity=0.093 Sum_probs=97.1
Q ss_pred CcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeecc--ccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc-
Q 022910 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN- 140 (290)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~- 140 (290)
.+-+..+.++. .++..+..+.-++|.|+.+......+.. -.+-..++.. .|++..++..+.-+.+.|+.+.+
T Consensus 86 ~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 86 RDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence 44556666664 4555666777899999987654333221 1133344444 78888888866667788886553
Q ss_pred --eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCccc---EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910 141 --LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (290)
Q Consensus 141 --~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 215 (290)
+..++.........++.+ |++-..+..++-+.+.|+.... .+.... ....+.++..+++-.+++.. +--+
T Consensus 161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy--~egv 235 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY--DEGV 235 (370)
T ss_pred ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc--ccce
Confidence 333444455555666664 7788888899999999997653 222322 23367777777665544443 3346
Q ss_pred EEEcCCCCeeeEEEe
Q 022910 216 RVWNPKSGENIHVIR 230 (290)
Q Consensus 216 ~i~d~~~~~~~~~~~ 230 (290)
.+-|..+.+....+.
T Consensus 236 livd~s~~ssp~~~g 250 (370)
T COG5276 236 LIVDVSGPSSPTVFG 250 (370)
T ss_pred EEEecCCCCCceEee
Confidence 677776665544443
No 448
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.81 E-value=0.064 Score=29.29 Aligned_cols=32 Identities=13% Similarity=0.280 Sum_probs=26.9
Q ss_pred CCEEEEEEcCCC---CEEEEeeCCCeEEEEECCcc
Q 022910 150 GGVEWVSWHPRG---HIVLAGSEDSTVWMWNADRA 181 (290)
Q Consensus 150 ~~i~~i~~~~~~---~~l~~~~~dg~i~i~d~~~~ 181 (290)
+.++++.|+|.. .+|+.+-..|.|.++|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 48888888999999999953
No 449
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.81 E-value=1 Score=38.41 Aligned_cols=145 Identities=18% Similarity=0.209 Sum_probs=79.7
Q ss_pred EEEEEECCCCCcEEEEecCCCcE-EEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCc-----
Q 022910 67 VYSVACSPTDATLVATGGGDDKG-FFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN----- 140 (290)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i-~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----- 140 (290)
...+..++ ++.+++.+.. |.+ +-|+--.......-......+..+.|.+++..++++ ..|.+.. ....++
T Consensus 241 f~~v~~~~-dG~~~~vg~~-G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSR-GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcC-CCCEEEEECC-ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc
Confidence 44455566 5566666543 433 233322111122222235578999999998877665 4565443 334443
Q ss_pred eEEEEec--CCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEee---ecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 022910 141 LKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATL 215 (290)
Q Consensus 141 ~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i 215 (290)
....... ....+..+.|.+++..+++| ..|.+.... ..++.-... ......++.+.|.++++.+++| .+|.|
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i 393 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL 393 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence 1222221 22358889999877665555 457666553 344432222 2334678899998776655554 67877
Q ss_pred EEE
Q 022910 216 RVW 218 (290)
Q Consensus 216 ~i~ 218 (290)
..|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
No 450
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.71 E-value=0.44 Score=33.40 Aligned_cols=116 Identities=11% Similarity=0.073 Sum_probs=73.5
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEcCCCC--------ceEEEEecCCCCEEEEEEcC-----CCCEEEEeeCCCeEEEEEC
Q 022910 112 SLAFSMDGQLLASGGLDGLVQIWDPSSG--------NLKCTLEGPGGGVEWVSWHP-----RGHIVLAGSEDSTVWMWNA 178 (290)
Q Consensus 112 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~i~~i~~~~-----~~~~l~~~~~dg~i~i~d~ 178 (290)
.-+|......|++++..|.|.|++.... ..+..+. -...|++++-.+ ....|+.|+. ..|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 3456555667888899999999987643 2344444 344577776544 2346777765 67999999
Q ss_pred CcccEEEeeecCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEcCCCCeeeEEEe
Q 022910 179 DRAAYLNMFSGHGSSVTCGDFTP---DGKTICTGSDDATLRVWNPKSGENIHVIR 230 (290)
Q Consensus 179 ~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 230 (290)
....-+... .....+.++.+-. ...-++..+.+..|.-||....+...++.
T Consensus 81 ~~N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 81 ENNSDLFYK-EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred ccCchhhhh-hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 877544322 2345677776632 22335555557788889887666655543
No 451
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.71 E-value=0.65 Score=39.71 Aligned_cols=97 Identities=14% Similarity=0.202 Sum_probs=70.1
Q ss_pred CCCCCCCceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEEC----CCC-----
Q 022910 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS----MDG----- 119 (290)
Q Consensus 49 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~----~~~----- 119 (290)
+...+......|......+.++..+| .+.+.|+...=|.|.++|+.++..++..++.... .+.|. +..
T Consensus 292 ~~~~~l~~r~~l~D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~ 368 (415)
T PF14655_consen 292 EPAAPLPMRFGLPDSKREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSN 368 (415)
T ss_pred CCCcccceEEeeccCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeeccccccccc
Confidence 34456667778888888999999999 6888888888899999999998887777664432 11121 000
Q ss_pred ----------C--EEEEEeCCCcEEEEcCCCCceEEEEecC
Q 022910 120 ----------Q--LLASGGLDGLVQIWDPSSGNLKCTLEGP 148 (290)
Q Consensus 120 ----------~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 148 (290)
. +++-+-.-|.|-||.++++..+..+...
T Consensus 369 ~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 369 SNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred ccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 1 2344566789999999998887776643
No 452
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.45 E-value=1.5 Score=37.67 Aligned_cols=151 Identities=12% Similarity=0.041 Sum_probs=0.0
Q ss_pred EEEEEECCCCCcEEEEecCCCcEEEEEccCCe-----eeeeeccccCCEEEEEE----CCCCCEEEEEeCCCcEEEEcC-
Q 022910 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGD-----WASEIQGHKDSVSSLAF----SMDGQLLASGGLDGLVQIWDP- 136 (290)
Q Consensus 67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~i~~~~~----~~~~~~l~~~~~dg~i~i~d~- 136 (290)
|-.+.-++++...|++|+..|.++||+..... .+...+ -..+|..+.. +......++.-.-..+.||.+
T Consensus 27 v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~ 105 (418)
T PF14727_consen 27 VGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVS 105 (418)
T ss_pred EEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEE
Q ss_pred --------CCCceEEEEecCCCCEEEEEEcC-------CCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC
Q 022910 137 --------SSGNLKCTLEGPGGGVEWVSWHP-------RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP 201 (290)
Q Consensus 137 --------~~~~~~~~~~~~~~~i~~i~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 201 (290)
.+.-.+..+..|.-.-.+..+.. ...++.+-+-||.+.+|+-+.....+.+.. ---...+.|.+
T Consensus 106 ~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~ 184 (418)
T PF14727_consen 106 LVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCP 184 (418)
T ss_pred ecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEee
Q ss_pred CCCEEEEEeCCCeEEEEc
Q 022910 202 DGKTICTGSDDATLRVWN 219 (290)
Q Consensus 202 ~~~~l~~~~~dg~i~i~d 219 (290)
.-..|++++.+..|.-|.
T Consensus 185 ~tDsfvt~sss~~l~~Yk 202 (418)
T PF14727_consen 185 RTDSFVTASSSWTLECYK 202 (418)
T ss_pred cCCEEEEecCceeEEEec
No 453
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.44 E-value=1.1 Score=40.84 Aligned_cols=142 Identities=9% Similarity=0.064 Sum_probs=89.1
Q ss_pred CcEEEEecCCCcEEEEEccCCeeee------ee----------------ccccCCEEEEEECC--CCCEEEEEeCCCcEE
Q 022910 77 ATLVATGGGDDKGFFWRINQGDWAS------EI----------------QGHKDSVSSLAFSM--DGQLLASGGLDGLVQ 132 (290)
Q Consensus 77 ~~~l~~~~~dg~i~iw~~~~~~~~~------~~----------------~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~ 132 (290)
.++++++. .+.|.||+........ .+ ......|+.|.... +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 44555554 5899999986432211 11 00112355554432 345788899999999
Q ss_pred EEcCCC-------C-------------ceEEEEecCCCCEEEEEEc--CCCCEEEEeeCCCeEEEEECCcc--cE-EEee
Q 022910 133 IWDPSS-------G-------------NLKCTLEGPGGGVEWVSWH--PRGHIVLAGSEDSTVWMWNADRA--AY-LNMF 187 (290)
Q Consensus 133 i~d~~~-------~-------------~~~~~~~~~~~~i~~i~~~--~~~~~l~~~~~dg~i~i~d~~~~--~~-~~~~ 187 (290)
+|.+++ . ++...+. ....++.++++ ...++||++++...|.||-+... +. ...-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 996521 0 1122223 23468999998 88889999999888888765442 11 1111
Q ss_pred ecCCCCeEEEEEcCCC---C---EEEEEeCCCeEEEEcC
Q 022910 188 SGHGSSVTCGDFTPDG---K---TICTGSDDATLRVWNP 220 (290)
Q Consensus 188 ~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~i~d~ 220 (290)
..+...|.+|+|.++. . ++++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1256678899998743 2 7788889999998887
No 454
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.42 E-value=0.87 Score=34.84 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=79.4
Q ss_pred CEEEEEeCCCcEEEEcCC--CCceEEEEecCCCCEEEEEEcCCCCEEEEeeCC---C---eEEEE---ECC--cccEEE-
Q 022910 120 QLLASGGLDGLVQIWDPS--SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---S---TVWMW---NAD--RAAYLN- 185 (290)
Q Consensus 120 ~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g---~i~i~---d~~--~~~~~~- 185 (290)
+.|+.+...+.|.+|++. ..+++.+|..- +.|..+.++..|++|++--.+ . .+|+| ... ..++++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455444667889999988 34556677655 679999999999999985432 2 56664 222 111111
Q ss_pred eeec---------------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCee-e---EEEeC--C---CCc
Q 022910 186 MFSG---------------------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN-I---HVIRG--H---PYH 235 (290)
Q Consensus 186 ~~~~---------------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~---~~~~~--~---~~~ 235 (290)
++-+ ...++.+++..|-..-|++|+ ++.+.+|.+..... . ..+.- . ...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 1111 244677888888433455554 45788887764332 1 11110 0 001
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 022910 236 TEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (290)
Q Consensus 236 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~ 265 (290)
.-.+..+++. +.|+|..+ +-.++++.+
T Consensus 187 ~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred CceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 1224555554 55777665 446666654
No 455
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=95.37 E-value=1 Score=35.46 Aligned_cols=144 Identities=14% Similarity=0.255 Sum_probs=80.7
Q ss_pred EEEEcCCCCceEEEEecCCCCEEEEEEcCCCCEEEEeeC-C--CeEEEEECCc----ccEEEe--eecCCCCeEEEEEcC
Q 022910 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D--STVWMWNADR----AAYLNM--FSGHGSSVTCGDFTP 201 (290)
Q Consensus 131 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d--g~i~i~d~~~----~~~~~~--~~~~~~~i~~~~~~~ 201 (290)
-.+||+.+++....-.....-...-.+-++|++|.+|+. + ..+++++... ...... .-.....-.+....|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 457898887654322222222233456789999999876 2 3477777544 111110 011233444556678
Q ss_pred CCCEEEEEeCCCe-EEEEcCCCC-eeeEEE---eCC--CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEE
Q 022910 202 DGKTICTGSDDAT-LRVWNPKSG-ENIHVI---RGH--PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL 274 (290)
Q Consensus 202 ~~~~l~~~~~dg~-i~i~d~~~~-~~~~~~---~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 274 (290)
+|+.|+.|+.... ..+|..+.. .....+ ... .....--..+...|+|++++.+..+. .+||..+.+.++.+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 9999999887753 344444221 111111 100 00112233566789999999887654 45788888877777
Q ss_pred cc
Q 022910 275 VS 276 (290)
Q Consensus 275 ~~ 276 (290)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 64
No 456
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.35 E-value=1.4 Score=36.76 Aligned_cols=218 Identities=12% Similarity=0.142 Sum_probs=108.6
Q ss_pred CEEEEEECCCCCcEEEEecCCCcEEEEEccCCee---eeee----ccccCCEEEEEECCC---CCEEEEEeCC-------
Q 022910 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDW---ASEI----QGHKDSVSSLAFSMD---GQLLASGGLD------- 128 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~----~~~~~~i~~~~~~~~---~~~l~~~~~d------- 128 (290)
.-++|+|.| ++.+|++ ...|.|++++ ..+.. +..+ .........++++|+ ..+|++....
T Consensus 3 ~P~~~a~~p-dG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLP-DGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEET-TSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeC-CCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 457899999 6777765 5589999999 33332 2222 234457899999994 3344443321
Q ss_pred --CcEEEEcCCCC-------ceE-EEEec---CCCCEEEEEEcCCCCEEEEeeCC-------------CeEEEEECCccc
Q 022910 129 --GLVQIWDPSSG-------NLK-CTLEG---PGGGVEWVSWHPRGHIVLAGSED-------------STVWMWNADRAA 182 (290)
Q Consensus 129 --g~i~i~d~~~~-------~~~-~~~~~---~~~~i~~i~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~ 182 (290)
..|.-|.+..+ +.+ ..+.. .......|.|.|++.++++.+.. |.|.-.+....-
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcC
Confidence 23444444333 111 11222 22346779999999766665433 233333332110
Q ss_pred ------------EEEeeecCCCCeEEEEEcCC-CCEEEEE-eCCCeEEEEcCCCCe------------------------
Q 022910 183 ------------YLNMFSGHGSSVTCGDFTPD-GKTICTG-SDDATLRVWNPKSGE------------------------ 224 (290)
Q Consensus 183 ------------~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~~dg~i~i~d~~~~~------------------------ 224 (290)
....+..--.....++|+|. ++++++= +.++.=.|.-+..+.
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 00111111123567899998 6555432 222211121111111
Q ss_pred -----eeEEEeCCCCcccCeEEEEEcC-------CCCEEEEEeCCCcEEEEEcCCCcEEE---EE-ccCCCcEEEEEEec
Q 022910 225 -----NIHVIRGHPYHTEGLTCLTISA-------DSTLALSGSKDGSVHMVNITTGKVVS---SL-VSHTDSIECIGFSR 288 (290)
Q Consensus 225 -----~~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~~wd~~~~~~~~---~~-~~~~~~v~~i~~s~ 288 (290)
+...+. +...+..+.|.+ .|.++++.-..+.|....+..+..+. .+ ......+..|++.|
T Consensus 240 ~~~~~P~~~~~----~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 240 PGFVPPVFAYP----PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP 315 (331)
T ss_dssp TTS---SEEET----TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred CCcCccceeec----CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence 111111 234566777753 45577766667788888887554332 22 23344899999999
Q ss_pred CC
Q 022910 289 SE 290 (290)
Q Consensus 289 d~ 290 (290)
||
T Consensus 316 DG 317 (331)
T PF07995_consen 316 DG 317 (331)
T ss_dssp TS
T ss_pred CC
Confidence 97
No 457
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=0.66 Score=39.50 Aligned_cols=124 Identities=9% Similarity=0.046 Sum_probs=78.4
Q ss_pred CCCcEEEEcCCCC---ceEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEE----EeeecCCCCeEEEEE
Q 022910 127 LDGLVQIWDPSSG---NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL----NMFSGHGSSVTCGDF 199 (290)
Q Consensus 127 ~dg~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~i~~~~~ 199 (290)
..|.+.-|-+... -++..-....++|.++.|++|.+.||+--.+..|.+++....+.. .+.+.....|....|
T Consensus 41 rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W 120 (657)
T KOG2377|consen 41 RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCW 120 (657)
T ss_pred ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEE
Confidence 3455555554322 122222335568999999999999999999999999998443322 233344556889999
Q ss_pred cCCCCEEEEEeCCCeEEEEcCCCCe-eeEEEeCCCCcccCeEEEEEcCCCCEEEEEe
Q 022910 200 TPDGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (290)
Q Consensus 200 ~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 255 (290)
+.. .-++.-+..| +-+|-....+ .++.++. +...|+...|+++.+.++-++
T Consensus 121 ~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks---~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 121 TSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKS---HNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred ecC-eeEEEEecCC-eEEEEEchhhhhhhhhhh---cccCccEEEEccccceEeeec
Confidence 866 4555555444 5666543322 2333333 677899999999877544443
No 458
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=95.10 E-value=1.6 Score=36.14 Aligned_cols=106 Identities=13% Similarity=0.214 Sum_probs=53.7
Q ss_pred CCcEEEEecCCC-----cEEEEEccCCeee---eee---ccccCCEEEEEECCCCCEEEEEeC-----CCcEEEEcCCCC
Q 022910 76 DATLVATGGGDD-----KGFFWRINQGDWA---SEI---QGHKDSVSSLAFSMDGQLLASGGL-----DGLVQIWDPSSG 139 (290)
Q Consensus 76 ~~~~l~~~~~dg-----~i~iw~~~~~~~~---~~~---~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~ 139 (290)
+..+++.|+.++ .+..||+.+.+.. ..+ ....... +++. -+++.++.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG-SACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc-eEEE-ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 445667776543 4666777665531 112 1111111 2222 25566666653 246888898876
Q ss_pred ceEEEEecCC-CCEEEEEEcCCCCEEEEeeCCC----eEEEEECCcccE
Q 022910 140 NLKCTLEGPG-GGVEWVSWHPRGHIVLAGSEDS----TVWMWNADRAAY 183 (290)
Q Consensus 140 ~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg----~i~i~d~~~~~~ 183 (290)
+-...-.... ......+...++++++.|+.++ .+.+||+.+.+-
T Consensus 150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 5433211111 1112222233677777777654 356888887653
No 459
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.07 E-value=1.1 Score=34.22 Aligned_cols=104 Identities=14% Similarity=0.264 Sum_probs=62.7
Q ss_pred CEEEEeeCCCeEEEEECCc--ccEEEeeecCCCCeEEEEEcCCCCEEEEEeC---CC---eEEEE---cCC--CCeeeE-
Q 022910 162 HIVLAGSEDSTVWMWNADR--AAYLNMFSGHGSSVTCGDFTPDGKTICTGSD---DA---TLRVW---NPK--SGENIH- 227 (290)
Q Consensus 162 ~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg---~i~i~---d~~--~~~~~~- 227 (290)
..|+.+...+.|.+|++.+ .+.+.++..- +.|..+.++..|++|++-=. .. .+|+| ... ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4454546668899999983 3455666543 78899999999999998422 22 56664 222 111111
Q ss_pred EEeCCC------------------CcccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q 022910 228 VIRGHP------------------YHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTG 268 (290)
Q Consensus 228 ~~~~~~------------------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~ 268 (290)
.+.++. ....++.+++-.| .|++| +|+ ++.+.+|.++..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEE
Confidence 111110 0234677888888 55554 454 458888987643
No 460
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.06 E-value=0.16 Score=27.44 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=30.3
Q ss_pred CCCCEEEEEe-CCCcEEEEEcCCCcEEEEEccCCCcEEEEEEe
Q 022910 246 ADSTLALSGS-KDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287 (290)
Q Consensus 246 ~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~s 287 (290)
|++++|+++. .+++|.++|..+++.+.++.. ......++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 5677666655 478999999999999998887 3445566654
No 461
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.04 E-value=0.29 Score=38.06 Aligned_cols=65 Identities=18% Similarity=0.298 Sum_probs=49.0
Q ss_pred EcCCCCEEEEeeCCCeEEEEECCcccEEEee-------e-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCC
Q 022910 157 WHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-------S-------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (290)
Q Consensus 157 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 222 (290)
+...+.+|++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3447889999999999999999988654322 1 2456788889998887776654 57889998753
No 462
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.95 E-value=0.27 Score=38.19 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=51.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEE-e---CCC-------CcccCeEEEEEcCCCCEEEEEeCCCcE
Q 022910 192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI-R---GHP-------YHTEGLTCLTISADSTLALSGSKDGSV 260 (290)
Q Consensus 192 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~---~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i 260 (290)
.++..+. ..+.+|++-+.+|.+++||+.+++.+..- . ... .....|..+.++.+|.-|++-+ +|..
T Consensus 13 s~~~~l~--~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~ 89 (219)
T PF07569_consen 13 SPVSFLE--CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDS 89 (219)
T ss_pred CceEEEE--eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCE
Confidence 3444444 46889999999999999999988764322 0 000 2456788899998887776654 6788
Q ss_pred EEEEcCC
Q 022910 261 HMVNITT 267 (290)
Q Consensus 261 ~~wd~~~ 267 (290)
+.|+..-
T Consensus 90 y~y~~~L 96 (219)
T PF07569_consen 90 YSYSPDL 96 (219)
T ss_pred EEecccc
Confidence 9998653
No 463
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=94.77 E-value=3.6 Score=38.52 Aligned_cols=71 Identities=7% Similarity=0.006 Sum_probs=50.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEE----eCCC------------CcccCeEEEEEcCCCCEEEEE
Q 022910 191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI----RGHP------------YHTEGLTCLTISADSTLALSG 254 (290)
Q Consensus 191 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~------------~~~~~v~~~~~~~~~~~l~~~ 254 (290)
...|.++....-+.+++....||+|.++|..+.+.+... .... .....+-.++|||.+..++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 356777777777888999999999999998877554333 1000 011134468899999999988
Q ss_pred eCCCcEE
Q 022910 255 SKDGSVH 261 (290)
Q Consensus 255 ~~dg~i~ 261 (290)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888865
No 464
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.76 E-value=1.4 Score=40.04 Aligned_cols=163 Identities=13% Similarity=0.148 Sum_probs=84.4
Q ss_pred CCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeee-ee--ccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 022910 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS-EI--QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (290)
Q Consensus 63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 139 (290)
..+++..+.|+. +..+| +-..+|++++|++....... .. ......|..+.|..+|-.+. ..+|.+.+-+-...
T Consensus 82 ~~~~lI~mgWs~-~eeLI-~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavl--t~~g~v~~i~~~~~ 157 (829)
T KOG2280|consen 82 KHGELIGMGWSD-DEELI-CVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVL--TVSGQVILINGVEE 157 (829)
T ss_pred cCCCeeeecccC-CceEE-EEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEE--ecCCcEEEEcCCCc
Confidence 345888999997 55454 56789999999986432222 11 22344566666666664333 33455555443222
Q ss_pred ceEEEEec-CCCCEEEEEE--cCCCC---EEEEee-CCCeEEEEECCcc-cEEEeeecCCCCeEEEEEcCCCCEEEEEeC
Q 022910 140 NLKCTLEG-PGGGVEWVSW--HPRGH---IVLAGS-EDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (290)
Q Consensus 140 ~~~~~~~~-~~~~i~~i~~--~~~~~---~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 211 (290)
..+..++. +.....+.+| .+++. .++-.. ..+ ..++-.... .....+....+.+..+..||+.++|+--..
T Consensus 158 ~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~ 236 (829)
T KOG2280|consen 158 PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE 236 (829)
T ss_pred chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec
Confidence 22223322 1111111222 22211 111111 000 011111111 111222223466788999999999999999
Q ss_pred CCeEEEEcCCCCeeeEEEe
Q 022910 212 DATLRVWNPKSGENIHVIR 230 (290)
Q Consensus 212 dg~i~i~d~~~~~~~~~~~ 230 (290)
.|.|.+-+....+....+.
T Consensus 237 ~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 237 TGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCcEEEEecchhhhhhccC
Confidence 9999998877666554444
No 465
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=0.61 Score=44.72 Aligned_cols=159 Identities=17% Similarity=0.256 Sum_probs=94.7
Q ss_pred ccCCEEEEEECCC-CCEEEEEeCCCcEEEEcCCCCceEEEEecCCCCEEEEEE--------cCCCCEEEEeeCCCeEEEE
Q 022910 106 HKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW--------HPRGHIVLAGSEDSTVWMW 176 (290)
Q Consensus 106 ~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~--------~~~~~~l~~~~~dg~i~i~ 176 (290)
|...-..+-+.|. ++.-+ +-|+.+.+|+.+++.....+.+-...|..+.. -|.-+++++...--.|.++
T Consensus 77 ~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~il 154 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVIL 154 (1311)
T ss_pred CcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEE
Confidence 3333344555554 33333 34789999999997777776665555655543 2223344444444566666
Q ss_pred ECCccc---------EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEE--EcCCCC---e-e-------------eEE
Q 022910 177 NADRAA---------YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV--WNPKSG---E-N-------------IHV 228 (290)
Q Consensus 177 d~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i--~d~~~~---~-~-------------~~~ 228 (290)
-+.-.. ...++...+..|.++....+|+.|++|- ||.|+- |....+ + + +..
T Consensus 155 gV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs 233 (1311)
T KOG1900|consen 155 GVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS 233 (1311)
T ss_pred EEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhh
Confidence 443211 0122333466789999888888777765 554432 111111 0 0 011
Q ss_pred EeCCC-CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910 229 IRGHP-YHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 229 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 267 (290)
+...+ .+..+|..+........|++-+..|+|.+|++..
T Consensus 234 ~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 234 LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11111 3567899999998888999999999999999976
No 466
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.62 E-value=1.2 Score=42.83 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=27.3
Q ss_pred cCEEEEEECCCCCcEEEEecCCCcEEEEEccCCee
Q 022910 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW 99 (290)
Q Consensus 65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 99 (290)
.....++|.| ...++|.++..|.|++|-...-+.
T Consensus 36 ~~~~~~afD~-~q~llai~t~tg~i~~yg~~~ve~ 69 (993)
T KOG1983|consen 36 STPSALAFDP-TQGLLAIGTRTGAIKIYGQPGVEF 69 (993)
T ss_pred CCCcceeecc-ccceEEEEEecccEEEecccceEE
Confidence 3556788999 788999999999999998654433
No 467
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.59 E-value=2.2 Score=35.31 Aligned_cols=105 Identities=12% Similarity=0.212 Sum_probs=52.4
Q ss_pred CCCEEEEEeCC-----CcEEEEcCCCCceE---EEEecCCCCE--EEEEEcCCCCEEEEeeC-----CCeEEEEECCccc
Q 022910 118 DGQLLASGGLD-----GLVQIWDPSSGNLK---CTLEGPGGGV--EWVSWHPRGHIVLAGSE-----DSTVWMWNADRAA 182 (290)
Q Consensus 118 ~~~~l~~~~~d-----g~i~i~d~~~~~~~---~~~~~~~~~i--~~i~~~~~~~~l~~~~~-----dg~i~i~d~~~~~ 182 (290)
++..++.|+.+ ..+..||+.+.+.. ..+.....+. .+++.. ++++++.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 55566666653 35667777665531 1221111111 122222 5666666664 2358889988765
Q ss_pred EEEe--eecCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEcCCCCe
Q 022910 183 YLNM--FSGHGSSVTCGDFTPDGKTICTGSDDA----TLRVWNPKSGE 224 (290)
Q Consensus 183 ~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~ 224 (290)
-... +... ......+...++++++.|+.++ .+.+||+.+.+
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 3322 2111 1111122223566777777654 35688887653
No 468
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.53 E-value=1.6 Score=35.26 Aligned_cols=116 Identities=13% Similarity=0.210 Sum_probs=72.1
Q ss_pred CeEEEEECCcccEEEeeecCCCCeEEEEEcCCCCEEEEEe------CCCeEEEEcCCCCeeeEEEeCC--CCcccCeEEE
Q 022910 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS------DDATLRVWNPKSGENIHVIRGH--PYHTEGLTCL 242 (290)
Q Consensus 171 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~ 242 (290)
..|++||..+.+-...-.+..+.|+.|.|..+.++++.|. ....+..||+.+.. ...+... ..-..+++.+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEE
Confidence 4599999988876666666778899999986666666654 35578889987653 3334331 1234678887
Q ss_pred EEcC-CC-CEEEEEe-C--CCcEEEEEcCCCcEEEE-EccCCCcEEEEEEe
Q 022910 243 TISA-DS-TLALSGS-K--DGSVHMVNITTGKVVSS-LVSHTDSIECIGFS 287 (290)
Q Consensus 243 ~~~~-~~-~~l~~~~-~--dg~i~~wd~~~~~~~~~-~~~~~~~v~~i~~s 287 (290)
.+.. ++ ++.++|. . +..|..||=.+...+.. .......|+++.+-
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 7743 33 3444444 2 33577777555555544 23334566666553
No 469
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.52 E-value=0.27 Score=41.72 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=96.5
Q ss_pred ccccCCEEEEEECCCCCEEEEEeCCCcEEEEcCCCCceEEE-E-ecCCC----CEE-EEEEcCCCCEEEEeeCCCeEEEE
Q 022910 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT-L-EGPGG----GVE-WVSWHPRGHIVLAGSEDSTVWMW 176 (290)
Q Consensus 104 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~-~~~~~----~i~-~i~~~~~~~~l~~~~~dg~i~i~ 176 (290)
......+..+-..|+++.++.-+. ..+.++++.+...... + ....+ .|+ ++..-..|..+++++.||.|.-|
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW 295 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence 334456777888999998877665 6788888876432211 1 11111 111 11112246678888889988877
Q ss_pred -ECCcc-----cEEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCE
Q 022910 177 -NADRA-----AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTL 250 (290)
Q Consensus 177 -d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 250 (290)
|.+.. ..++.++-....+..+.-..+.+-+++-+..|++.++.....+.+. +.. .-..+.-+++||.+.+
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~---~~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FER---AYQAPQLVAMSPNQAY 371 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhh---hhcCcceeeeCcccch
Confidence 44432 1233333334455544333345667888888998888654443322 221 2235677899999999
Q ss_pred EEEEeCCCcEEEEEcCCCcE
Q 022910 251 ALSGSKDGSVHMVNITTGKV 270 (290)
Q Consensus 251 l~~~~~dg~i~~wd~~~~~~ 270 (290)
|++- ..|.|+++.+.+..+
T Consensus 372 Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 372 LLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred heee-cCCceEEEEecCCCC
Confidence 8765 457899998876543
No 470
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.48 E-value=0.079 Score=48.48 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=73.8
Q ss_pred CcCEEEEEECCC--CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEE-----------ECCCCCEEEEEeCCCc
Q 022910 64 SDEVYSVACSPT--DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA-----------FSMDGQLLASGGLDGL 130 (290)
Q Consensus 64 ~~~v~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~l~~~~~dg~ 130 (290)
...+.-+.|.|. ...++..+-.++.+++..+.+... ..+.+|...+..++ .+|||..|+.++.||.
T Consensus 180 gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~ 258 (1283)
T KOG1916|consen 180 GSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS 258 (1283)
T ss_pred CCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence 334455556552 446777788888988887765332 33444666555444 5899999999999999
Q ss_pred EEEEcCC-CC----ceEEEEecCC-CCEEEEEEcCCC---------CEEEEee-CCCeEEEEECCcccEE
Q 022910 131 VQIWDPS-SG----NLKCTLEGPG-GGVEWVSWHPRG---------HIVLAGS-EDSTVWMWNADRAAYL 184 (290)
Q Consensus 131 i~i~d~~-~~----~~~~~~~~~~-~~i~~i~~~~~~---------~~l~~~~-~dg~i~i~d~~~~~~~ 184 (290)
+++|.+- ++ .++...+.|. .+-.|..++.+. .++++++ .+..+++|.....+++
T Consensus 259 v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 259 VGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 9988763 22 3444556565 333333344322 2344444 3556999987766665
No 471
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=94.48 E-value=1.9 Score=34.11 Aligned_cols=69 Identities=9% Similarity=0.208 Sum_probs=44.8
Q ss_pred CCCeEEEEEcC-------CCCEEEEEeCCCeEEEEcCCCCeeeEEEeCCCCcccCeEEEE----EcCCCCEEEEEeCCCc
Q 022910 191 GSSVTCGDFTP-------DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT----ISADSTLALSGSKDGS 259 (290)
Q Consensus 191 ~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~l~~~~~dg~ 259 (290)
...|+||+--. .-..|+.|+..|.|+|.|.........+... .-++ .+. |..-.-.|++++.||.
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lp---svPv-~i~~~G~~devdyRI~Va~Rdg~ 251 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLP---SVPV-FISVSGQYDEVDYRIVVACRDGK 251 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecC---CCce-EEEEEeeeeccceEEEEEeCCCE
Confidence 44677776543 1257999999999999999888777666642 2222 222 2211235677788998
Q ss_pred EEEE
Q 022910 260 VHMV 263 (290)
Q Consensus 260 i~~w 263 (290)
|++.
T Consensus 252 iy~i 255 (257)
T PF14779_consen 252 IYTI 255 (257)
T ss_pred EEEE
Confidence 8764
No 472
>PLN02153 epithiospecifier protein
Probab=94.43 E-value=2.6 Score=35.29 Aligned_cols=143 Identities=13% Similarity=0.194 Sum_probs=70.1
Q ss_pred CCcEEEEecCC-----CcEEEEEccCCeeeee--ecc---ccCC-EEEEEECCCCCEEEEEeCC-----------CcEEE
Q 022910 76 DATLVATGGGD-----DKGFFWRINQGDWASE--IQG---HKDS-VSSLAFSMDGQLLASGGLD-----------GLVQI 133 (290)
Q Consensus 76 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~--~~~---~~~~-i~~~~~~~~~~~l~~~~~d-----------g~i~i 133 (290)
++.+++.|+.+ ..+.+||+.+.+.... +.. .... -.+++. -+++.++.|+.+ ..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence 45677777653 2577888877654432 210 1111 122222 355666666643 24778
Q ss_pred EcCCCCceEEEEec-----CCCCEEEEEEcCCCCEEEEeeCC-------------CeEEEEECCcccEEEeee-----cC
Q 022910 134 WDPSSGNLKCTLEG-----PGGGVEWVSWHPRGHIVLAGSED-------------STVWMWNADRAAYLNMFS-----GH 190 (290)
Q Consensus 134 ~d~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~-----~~ 190 (290)
||..+.+-...-.. .........+ ++++++.++.+ ..+.+||+.+.+-...-. ..
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~ 241 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGAGFAVV--QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA 241 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcceEEEE--CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC
Confidence 88877654321110 1111112222 55666655431 458889988765443211 01
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC--------------CeEEEEcCCCC
Q 022910 191 GSSVTCGDFTPDGKTICTGSDD--------------ATLRVWNPKSG 223 (290)
Q Consensus 191 ~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~ 223 (290)
.....++.+ ++.+++.|+.. ..|..||+.+.
T Consensus 242 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 242 RSVFAHAVV--GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred cceeeeEEE--CCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 111122222 46667777642 25778887654
No 473
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=94.42 E-value=0.45 Score=42.71 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=46.6
Q ss_pred CCCCEEEEEeCCCeEEEEcCCC----CeeeEEEe-----------CC--------CCcccCeEEEEEcC----CCCEEEE
Q 022910 201 PDGKTICTGSDDATLRVWNPKS----GENIHVIR-----------GH--------PYHTEGLTCLTISA----DSTLALS 253 (290)
Q Consensus 201 ~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~-----------~~--------~~~~~~v~~~~~~~----~~~~l~~ 253 (290)
++...++++..||.+....... +....... +. ......+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666788888899888877654 21111111 00 01123456666666 6789999
Q ss_pred EeCCCcEEEEEcCCCcEEEEEcc
Q 022910 254 GSKDGSVHMVNITTGKVVSSLVS 276 (290)
Q Consensus 254 ~~~dg~i~~wd~~~~~~~~~~~~ 276 (290)
-+.|+++|+||+.+++++.++..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEET
T ss_pred EeCCCeEEEEECCCCeEEEEecc
Confidence 99999999999999999877643
No 474
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=1.7 Score=37.91 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=51.5
Q ss_pred CEEEEEEcCCCCEEEEeeCCCeEEEEEC---------CcccEEEee----------e-cCCCCeEEEEEcCCC---CEEE
Q 022910 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNA---------DRAAYLNMF----------S-GHGSSVTCGDFTPDG---KTIC 207 (290)
Q Consensus 151 ~i~~i~~~~~~~~l~~~~~dg~i~i~d~---------~~~~~~~~~----------~-~~~~~i~~~~~~~~~---~~l~ 207 (290)
.|..+..++.|..++.++.+|.+.++=. +.++..-.. . ...-.+...+|+|+. ..|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 3666777888888888888886655431 122211111 1 112245677899964 6778
Q ss_pred EEeCCCeEEEEcCCCCeeeEEEeC
Q 022910 208 TGSDDATLRVWNPKSGENIHVIRG 231 (290)
Q Consensus 208 ~~~~dg~i~i~d~~~~~~~~~~~~ 231 (290)
.-+.|..||+|++.....+....+
T Consensus 185 iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred EEecCcEEEEEecCCcchhhccCC
Confidence 888899999999987665544443
No 475
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.36 E-value=1.6 Score=36.32 Aligned_cols=106 Identities=12% Similarity=0.210 Sum_probs=56.9
Q ss_pred CEEEEEEcCCCCEEEEeeCCCeEEEEECCccc--EEEee----ecCCCCeEEEEEcCC---CCEEEEEeC-C--------
Q 022910 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMF----SGHGSSVTCGDFTPD---GKTICTGSD-D-------- 212 (290)
Q Consensus 151 ~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~----~~~~~~i~~~~~~~~---~~~l~~~~~-d-------- 212 (290)
..+.|+|.|++++|++ ...|.|++++..... .+..+ ......+..++++|+ ..+|++... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 3678999999877665 558999999933222 22222 224457899999994 344444333 1
Q ss_pred CeEEEEcCCCC--e---e---eEEEeCCCCcccCeEEEEEcCCCCEEEEEeCC
Q 022910 213 ATLRVWNPKSG--E---N---IHVIRGHPYHTEGLTCLTISADSTLALSGSKD 257 (290)
Q Consensus 213 g~i~i~d~~~~--~---~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 257 (290)
..|.-|....+ . . +..+............|.|.|+|.++++.+..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 13444444332 1 1 11122211133456679999999777666543
No 476
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.29 E-value=2.7 Score=34.97 Aligned_cols=107 Identities=15% Similarity=0.211 Sum_probs=65.7
Q ss_pred CCCEEEEEEcCCCCEEEEeeCCCe------EEEEECCcc----cEE-----EeeecCCC--------CeEEEEEcCCCCE
Q 022910 149 GGGVEWVSWHPRGHIVLAGSEDST------VWMWNADRA----AYL-----NMFSGHGS--------SVTCGDFTPDGKT 205 (290)
Q Consensus 149 ~~~i~~i~~~~~~~~l~~~~~dg~------i~i~d~~~~----~~~-----~~~~~~~~--------~i~~~~~~~~~~~ 205 (290)
-+.+..+.+.+.+..+++.+.+|. ++.+.+... ..+ ..+....+ ..-+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356788899866666666666676 666655431 111 11111111 3447888677777
Q ss_pred EEEEeCC------CeEEEEcCCCCeeeEEEeCC------------CCcccCeEEEEEcCCCCEEEEEeC
Q 022910 206 ICTGSDD------ATLRVWNPKSGENIHVIRGH------------PYHTEGLTCLTISADSTLALSGSK 256 (290)
Q Consensus 206 l~~~~~d------g~i~i~d~~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~l~~~~~ 256 (290)
+++.=.+ ..|+.++.. ++....+... ...+...-+|+++|+|+.|+++..
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 7776666 789999976 6554444211 124567889999999997666543
No 477
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=94.20 E-value=0.47 Score=35.35 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCC------CEEEEEeCCCeEEEEcCCC
Q 022910 192 SSVTCGDFTPDG------KTICTGSDDATLRVWNPKS 222 (290)
Q Consensus 192 ~~i~~~~~~~~~------~~l~~~~~dg~i~i~d~~~ 222 (290)
..+..++|||.| .+|++.+.+|.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999943 4678889999999997654
No 478
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=93.97 E-value=1.3 Score=34.87 Aligned_cols=141 Identities=16% Similarity=0.269 Sum_probs=76.7
Q ss_pred EEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEeC---CCcEEEEcCCC----CceEE---EEecCCCCEEEEEEc
Q 022910 89 GFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSS----GNLKC---TLEGPGGGVEWVSWH 158 (290)
Q Consensus 89 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~----~~~~~---~~~~~~~~i~~i~~~ 158 (290)
-.+||+.+++....--...--+.+-.+.++|++|.+|+. ...+++++... ..... .+. ....-.....-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence 457888876543321112222333457789999998875 23577777544 11110 011 11223334445
Q ss_pred CCCCEEEEeeCCCe-EEEEECCcc--cEEE--eee-----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCeeeEE
Q 022910 159 PRGHIVLAGSEDST-VWMWNADRA--AYLN--MFS-----GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228 (290)
Q Consensus 159 ~~~~~l~~~~~dg~-i~i~d~~~~--~~~~--~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 228 (290)
|+|+.|+.|+.... ..+|.-+.. .... .+. ....---.+...|+|++|+.+..++ .|||..+++.++.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRT 204 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEee
Confidence 68999999887643 444543211 1111 111 0111223566789999998887654 4678888776666
Q ss_pred EeCC
Q 022910 229 IRGH 232 (290)
Q Consensus 229 ~~~~ 232 (290)
+...
T Consensus 205 lP~l 208 (243)
T PF07250_consen 205 LPDL 208 (243)
T ss_pred CCCC
Confidence 6543
No 479
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.85 E-value=5.9 Score=37.30 Aligned_cols=140 Identities=14% Similarity=0.205 Sum_probs=81.0
Q ss_pred cCCCCEEEEEEc---C----CCCEEEEeeCCCeEEEEECCcc---------------cEEEeee---cCCCCeEEEEEcC
Q 022910 147 GPGGGVEWVSWH---P----RGHIVLAGSEDSTVWMWNADRA---------------AYLNMFS---GHGSSVTCGDFTP 201 (290)
Q Consensus 147 ~~~~~i~~i~~~---~----~~~~l~~~~~dg~i~i~d~~~~---------------~~~~~~~---~~~~~i~~~~~~~ 201 (290)
....+|..|+|. . ..++|++=. ...+.|+...-. .++..+. ..+.+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456678888887 2 223555544 355666661111 1222332 1345678899999
Q ss_pred -CCCEEEEEeCCCeEEEEcCCCCee-----eEEEe---CC----CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 022910 202 -DGKTICTGSDDATLRVWNPKSGEN-----IHVIR---GH----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (290)
Q Consensus 202 -~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~---~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 268 (290)
+.+.||+....|...||++..... ..... +. .........+.|.++...|++++. ..+.++|+.+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 557899999999999999921111 11111 10 011234557889888777777764 47889999877
Q ss_pred cEEEEEc--cCCCcEEEEEEec
Q 022910 269 KVVSSLV--SHTDSIECIGFSR 288 (290)
Q Consensus 269 ~~~~~~~--~~~~~v~~i~~s~ 288 (290)
.....+. .....|..+.=+|
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~ 256 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSP 256 (765)
T ss_pred CccchhccCCChhheeeEEecC
Confidence 6533121 1234566655444
No 480
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=1.3 Score=42.61 Aligned_cols=152 Identities=14% Similarity=0.189 Sum_probs=93.3
Q ss_pred EEEEECCCCCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEEC-C-------CCCEEEEEeCCCcEEEEcCCCC
Q 022910 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS-M-------DGQLLASGGLDGLVQIWDPSSG 139 (290)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~-~-------~~~~l~~~~~dg~i~i~d~~~~ 139 (290)
..+-+-|.=++..+| -|..+.+|+++++.....+.+....|..+..- | .=+++++.+.--.|.++-+.-.
T Consensus 82 ~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~ 159 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD 159 (1311)
T ss_pred eeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence 344555544444444 46889999999977777777666667666542 2 2234444444455666643211
Q ss_pred ----ce-----EEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEE--ECCcc---c-E----------------EEeee
Q 022910 140 ----NL-----KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW--NADRA---A-Y----------------LNMFS 188 (290)
Q Consensus 140 ----~~-----~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~--d~~~~---~-~----------------~~~~~ 188 (290)
.. ...+...+..|.|+....+|+.|++|-. |.|+-. ....+ + + +..+.
T Consensus 160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~d-g~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~ 238 (1311)
T KOG1900|consen 160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRD-GNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP 238 (1311)
T ss_pred cccCcccccccceeeecCCceEEEEEeccCCcEEEeecC-CCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC
Confidence 11 1223334557899997778877666554 544322 11111 0 0 11222
Q ss_pred -cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCC
Q 022910 189 -GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (290)
Q Consensus 189 -~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 222 (290)
.+..+|..|.....-..+++-+..|+|++|++..
T Consensus 239 ~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 239 GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 4567999999988888999999999999999976
No 481
>PLN02193 nitrile-specifier protein
Probab=93.60 E-value=4.8 Score=35.44 Aligned_cols=144 Identities=12% Similarity=0.142 Sum_probs=73.5
Q ss_pred CCcEEEEecCC-----CcEEEEEccCCeeeeeecc----ccCCEEEEEECCCCCEEEEEeCC-----CcEEEEcCCCCce
Q 022910 76 DATLVATGGGD-----DKGFFWRINQGDWASEIQG----HKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGNL 141 (290)
Q Consensus 76 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~ 141 (290)
++.+++.|+.+ ..+.+||+.+.+....... ....-.++.. -+++.++.|+.+ ..+..||+.+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45677777654 3578888887655432111 1111122222 255666666654 3467788777654
Q ss_pred EEEEe-----cCCCCEEEEEEcCCCCEEEEeeCC----CeEEEEECCcccEEEeeec-----CCCCeEEEEEcCCCCEEE
Q 022910 142 KCTLE-----GPGGGVEWVSWHPRGHIVLAGSED----STVWMWNADRAAYLNMFSG-----HGSSVTCGDFTPDGKTIC 207 (290)
Q Consensus 142 ~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~ 207 (290)
...-. ........+.+ ++++++.++.+ ..+.+||+.+.+-...-.. ......++.+ ++++++
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv 382 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHIVI 382 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEEEE
Confidence 32111 01111112222 56777777655 4589999987754332211 1111222222 456677
Q ss_pred EEeCC--------------CeEEEEcCCCCe
Q 022910 208 TGSDD--------------ATLRVWNPKSGE 224 (290)
Q Consensus 208 ~~~~d--------------g~i~i~d~~~~~ 224 (290)
.|+.. ..+.+||+.+.+
T Consensus 383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 383 FGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred ECCccCCccccccCccceeccEEEEEcCcCE
Confidence 77643 247888887654
No 482
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.25 E-value=3.8 Score=33.22 Aligned_cols=115 Identities=17% Similarity=0.312 Sum_probs=72.2
Q ss_pred CCcEEEEEccCCeeeeeeccccCCEEEEEECCCCCEEEEEe------CCCcEEEEcCCCCceEEEEec-----CCCCEEE
Q 022910 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG------LDGLVQIWDPSSGNLKCTLEG-----PGGGVEW 154 (290)
Q Consensus 86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~ 154 (290)
...|++||..+.+....-.+-.+.|+.|.|..+.+.++.|. ....+..||+.+.... .+.. -.+++..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEE
Confidence 45699999998887776666778999999986666677664 3567888998876543 2222 2367888
Q ss_pred EEEcC-CCC-EEEEee-C--CCeEEEEECCcccEEEe-eecCCCCeEEEEEcC
Q 022910 155 VSWHP-RGH-IVLAGS-E--DSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTP 201 (290)
Q Consensus 155 i~~~~-~~~-~l~~~~-~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~ 201 (290)
+.+.. +.. ..+.|. . ...|..||-.+...+.. .......|..+.+-|
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 87743 333 443433 2 33577777655444433 222344555555543
No 483
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=93.16 E-value=2.1 Score=39.32 Aligned_cols=93 Identities=9% Similarity=-0.009 Sum_probs=50.7
Q ss_pred EEEEEcCCCCEEEEEeCCC-----eEEEEcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 022910 195 TCGDFTPDGKTICTGSDDA-----TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269 (290)
Q Consensus 195 ~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 269 (290)
..+.|-|+|..+++-..|| .|.++..+..+ -..+.........+..++|+-....++++ ..+.|.+|-.++..
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLr-HGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLR-HGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYH 327 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcc-cCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceE
Confidence 3478999999999876555 46666543211 11111111134456667777655555544 45588999876543
Q ss_pred EEEEEccCCCcEEEEEEecC
Q 022910 270 VVSSLVSHTDSIECIGFSRS 289 (290)
Q Consensus 270 ~~~~~~~~~~~v~~i~~s~d 289 (290)
-.-+..-.-..+.-+.|+|.
T Consensus 328 WYLK~e~~ip~~s~vkwhpe 347 (1243)
T COG5290 328 WYLKVERQIPGISYVKWHPE 347 (1243)
T ss_pred EEEEEeecCCCcceeeeccc
Confidence 22222222234556666663
No 484
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.91 E-value=3.1 Score=36.31 Aligned_cols=80 Identities=14% Similarity=0.110 Sum_probs=51.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEcCC---------CCeeeEEEeCCC--------CcccCeEEEEEcCCC---CEEE
Q 022910 193 SVTCGDFTPDGKTICTGSDDATLRVWNPK---------SGENIHVIRGHP--------YHTEGLTCLTISADS---TLAL 252 (290)
Q Consensus 193 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~--------~~~~~v~~~~~~~~~---~~l~ 252 (290)
.|..+..++.|..++..+.+|.+.++=.+ .++....-+... ...-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 46778889999999988889976655321 232211111000 012246678999964 5677
Q ss_pred EEeCCCcEEEEEcCCCcEEE
Q 022910 253 SGSKDGSVHMVNITTGKVVS 272 (290)
Q Consensus 253 ~~~~dg~i~~wd~~~~~~~~ 272 (290)
.-+.|..||+|++...+.+.
T Consensus 185 iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEecCcEEEEEecCCcchhh
Confidence 77889999999997655443
No 485
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.89 E-value=1.3 Score=32.99 Aligned_cols=30 Identities=13% Similarity=0.365 Sum_probs=25.1
Q ss_pred CEEEEEEcCCC------CEEEEeeCCCeEEEEECCc
Q 022910 151 GVEWVSWHPRG------HIVLAGSEDSTVWMWNADR 180 (290)
Q Consensus 151 ~i~~i~~~~~~------~~l~~~~~dg~i~i~d~~~ 180 (290)
.+..++|||.| -+|++.+.+|.|.+|.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 69999999953 3899999999999997653
No 486
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.83 E-value=5.1 Score=33.57 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=27.0
Q ss_pred CCcEEEEecCC-----------CcEEEEEccCCeeeeeeccccCCEE--EEEECCCCCEEEEEeCC
Q 022910 76 DATLVATGGGD-----------DKGFFWRINQGDWASEIQGHKDSVS--SLAFSMDGQLLASGGLD 128 (290)
Q Consensus 76 ~~~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~l~~~~~d 128 (290)
++.+.+.|+.. ..+..||..+.+............. +....-+++..+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 55677777653 2477788877655443211111111 11112367777777654
No 487
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.80 E-value=6.1 Score=34.42 Aligned_cols=113 Identities=9% Similarity=0.126 Sum_probs=63.8
Q ss_pred EecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccE--EEeee-----cCCCCeEEEEEcCCC------CEEEEEe-
Q 022910 145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--LNMFS-----GHGSSVTCGDFTPDG------KTICTGS- 210 (290)
Q Consensus 145 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~-----~~~~~i~~~~~~~~~------~~l~~~~- 210 (290)
+...-...+.|+|.|++++|++--..|.|++++..++.. +..+. .....+..|+++|+- .+|++..
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence 333344578999999998777665569999998655432 21111 135678899999873 3455442
Q ss_pred ---------CCCeEEEEcCCCC--e---eeEEEeCCCC-cccCeEEEEEcCCCCEEEEEeCC
Q 022910 211 ---------DDATLRVWNPKSG--E---NIHVIRGHPY-HTEGLTCLTISADSTLALSGSKD 257 (290)
Q Consensus 211 ---------~dg~i~i~d~~~~--~---~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d 257 (290)
....|.-|.+... . ....+...+. ....-..|.|.|||.++++.+..
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234544544311 1 1122222110 11234578899999877665543
No 488
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.55 E-value=0.82 Score=41.06 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=45.9
Q ss_pred CCCCEEEEeeCCCeEEEEECCc----ccEEEe-----------ee-----------cCCCCeEEEEEcC----CCCEEEE
Q 022910 159 PRGHIVLAGSEDSTVWMWNADR----AAYLNM-----------FS-----------GHGSSVTCGDFTP----DGKTICT 208 (290)
Q Consensus 159 ~~~~~l~~~~~dg~i~i~d~~~----~~~~~~-----------~~-----------~~~~~i~~~~~~~----~~~~l~~ 208 (290)
++...++.+..+|.+....... +..... +. ........+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3667888888999888887664 111110 00 0123456666766 6789999
Q ss_pred EeCCCeEEEEcCCCCeeeEEEe
Q 022910 209 GSDDATLRVWNPKSGENIHVIR 230 (290)
Q Consensus 209 ~~~dg~i~i~d~~~~~~~~~~~ 230 (290)
.+.|++||+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999966654
No 489
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.51 E-value=5 Score=32.70 Aligned_cols=157 Identities=7% Similarity=0.049 Sum_probs=88.2
Q ss_pred CcEEEEcCCCCceEEEEecC------CCCEEEEEEcCCC-----CEEEEee-CCCeEEEEECCcccEEEeeecC------
Q 022910 129 GLVQIWDPSSGNLKCTLEGP------GGGVEWVSWHPRG-----HIVLAGS-EDSTVWMWNADRAAYLNMFSGH------ 190 (290)
Q Consensus 129 g~i~i~d~~~~~~~~~~~~~------~~~i~~i~~~~~~-----~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~------ 190 (290)
-.|.+||+.+++.++++.-+ .+.+..+.+.... .+++.+. ..+-|.++|+.+++.-+....+
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 36888999999888776532 3467777776632 2444443 3467999999988654443221
Q ss_pred -------------CCCeEEEEEcC---CCCEEEEEeCCC-eEEEEc---CCCCe---------eeEEEeCCCCcccCeEE
Q 022910 191 -------------GSSVTCGDFTP---DGKTICTGSDDA-TLRVWN---PKSGE---------NIHVIRGHPYHTEGLTC 241 (290)
Q Consensus 191 -------------~~~i~~~~~~~---~~~~l~~~~~dg-~i~i~d---~~~~~---------~~~~~~~~~~~~~~v~~ 241 (290)
...+..++.+| ++++|+-+...+ .++-.. +++.. .+..+.. .......
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~---k~~~s~g 190 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGD---KGSQSDG 190 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE------SECE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccc---cCCCCce
Confidence 22366677765 556666555443 222221 11111 1122211 1245677
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCC---cEEEEE-ccC--CCcEEEEEEec
Q 022910 242 LTISADSTLALSGSKDGSVHMVNITTG---KVVSSL-VSH--TDSIECIGFSR 288 (290)
Q Consensus 242 ~~~~~~~~~l~~~~~dg~i~~wd~~~~---~~~~~~-~~~--~~~v~~i~~s~ 288 (290)
++++++|.++++--..+.|..|+..+. +.+..+ +.. -..+.++++.+
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~ 243 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDP 243 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeecc
Confidence 889999999999999999999998761 112222 221 24667777766
No 490
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.27 E-value=11 Score=36.03 Aligned_cols=131 Identities=18% Similarity=0.236 Sum_probs=74.8
Q ss_pred CCcEEEEcCCC-CceEEEEe--cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeec--CCCCeEEEEEcCC
Q 022910 128 DGLVQIWDPSS-GNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--HGSSVTCGDFTPD 202 (290)
Q Consensus 128 dg~i~i~d~~~-~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~ 202 (290)
+|.++.|++-. ++.+.-+. .-.+++. +..|...++++|- ...+++|++-..+++++... ....|+.+++ .
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~--Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~ 985 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVG--AICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--Y 985 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccce--EEeccCCEEEEec-ccEEEEeeCChHHHHhhhhhccCceEEEEEee--c
Confidence 46677776533 33222221 1223443 4456555555544 47899999988776655432 3456777776 4
Q ss_pred CCEEEEEeCCCeEEE--EcCCCCeeeEEEeCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 022910 203 GKTICTGSDDATLRV--WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (290)
Q Consensus 203 ~~~l~~~~~dg~i~i--~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 266 (290)
+..+++|..--.+.+ |+... +.+..+...+ ....|+++.+- |-..+|.+..=|.+.+..+.
T Consensus 986 ~~RI~VgD~qeSV~~~~y~~~~-n~l~~fadD~-~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 986 GARIVVGDIQESVHFVRYRRED-NQLIVFADDP-VPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred ceEEEEeeccceEEEEEEecCC-CeEEEEeCCC-ccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 667777765555544 44433 3344554433 34456666654 45567777777888777654
No 491
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=92.22 E-value=7.1 Score=33.80 Aligned_cols=32 Identities=13% Similarity=0.286 Sum_probs=25.2
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 022910 236 TEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 236 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 267 (290)
...|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34489999999889999999999999999975
No 492
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=92.21 E-value=6.6 Score=33.41 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=26.2
Q ss_pred CCcEEEEecCCC-----------cEEEEEccCCeeeeeeccccCCE--EEEEECCCCCEEEEEeCC
Q 022910 76 DATLVATGGGDD-----------KGFFWRINQGDWASEIQGHKDSV--SSLAFSMDGQLLASGGLD 128 (290)
Q Consensus 76 ~~~~l~~~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d 128 (290)
++.+++.|+... .+..||..+.+....-....... .+....-+++.++.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 456777776532 47778877765444221101111 111221366777777653
No 493
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.05 E-value=5.7 Score=32.36 Aligned_cols=189 Identities=14% Similarity=0.167 Sum_probs=103.8
Q ss_pred CEEEEEECCCCCcEEEE--ecC----------CCcEEEEEccCCeeeeeecc------ccCCEEEEEECCCC-----CEE
Q 022910 66 EVYSVACSPTDATLVAT--GGG----------DDKGFFWRINQGDWASEIQG------HKDSVSSLAFSMDG-----QLL 122 (290)
Q Consensus 66 ~v~~~~~~~~~~~~l~~--~~~----------dg~i~iw~~~~~~~~~~~~~------~~~~i~~~~~~~~~-----~~l 122 (290)
.|..+...+ .+.+.+. |.- .-+|.+||+.+++.++++.- ..+.+..+.+.... .++
T Consensus 2 sV~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 2 SVQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp -EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEE
T ss_pred cccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEE
Confidence 366677766 4444333 210 13799999999998877642 24567788886522 243
Q ss_pred EEE-eCCCcEEEEcCCCCceEEEEecC-------------------CCCEEEEEEcC---CCCEEEEeeCCC-eEEEEEC
Q 022910 123 ASG-GLDGLVQIWDPSSGNLKCTLEGP-------------------GGGVEWVSWHP---RGHIVLAGSEDS-TVWMWNA 178 (290)
Q Consensus 123 ~~~-~~dg~i~i~d~~~~~~~~~~~~~-------------------~~~i~~i~~~~---~~~~l~~~~~dg-~i~i~d~ 178 (290)
+.+ +..+-|.|+|+.+++..+.+..+ ...+..++.+| +++.|+...-.+ .++-...
T Consensus 81 YItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T 160 (287)
T PF03022_consen 81 YITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPT 160 (287)
T ss_dssp EEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEH
T ss_pred EEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEH
Confidence 333 33467999999988655443221 12356666655 555666555433 2332221
Q ss_pred ---Cccc---------EEEeeecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCCe---eeEEEeCCCCcccCeEEEE
Q 022910 179 ---DRAA---------YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE---NIHVIRGHPYHTEGLTCLT 243 (290)
Q Consensus 179 ---~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~v~~~~ 243 (290)
+... .+..+-........++++++|.++++--..+.|..|+..+.- ....+......-..+..+.
T Consensus 161 ~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~ 240 (287)
T PF03022_consen 161 SVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLK 240 (287)
T ss_dssp HHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEE
T ss_pred HHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceee
Confidence 1111 112221122466778899999999999999999999988621 2233332222346788999
Q ss_pred EcC--CCCEEEEEe
Q 022910 244 ISA--DSTLALSGS 255 (290)
Q Consensus 244 ~~~--~~~~l~~~~ 255 (290)
+.+ +|.+.+...
T Consensus 241 i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 241 IDPEGDGYLWVLSN 254 (287)
T ss_dssp E-T--TS-EEEEE-
T ss_pred eccccCceEEEEEC
Confidence 998 776666553
No 494
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.91 E-value=0.94 Score=38.64 Aligned_cols=167 Identities=13% Similarity=0.121 Sum_probs=97.7
Q ss_pred CceeeeccCCcCEEEEEECCCCCcEEEEecCCCcEEEEEccCCeeeee-e-ccccC----CEE-EEEECCCCCEEEEEeC
Q 022910 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-I-QGHKD----SVS-SLAFSMDGQLLASGGL 127 (290)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~-~~~~~----~i~-~~~~~~~~~~l~~~~~ 127 (290)
+.++.+..-...|..+-..| +++.++.-+. .++.++++.+.....+ + ....+ .|+ .+.....|..+++++.
T Consensus 211 e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 34444666677888889999 6665555443 6788888876432211 1 11011 111 1222335566888888
Q ss_pred CCcEEEE-cCCCC-c----eEEEEecCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEEEcC
Q 022910 128 DGLVQIW-DPSSG-N----LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP 201 (290)
Q Consensus 128 dg~i~i~-d~~~~-~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 201 (290)
||.|.-| |.+.+ . .++.++-...++..+.-..+.+-+++-+.+|++.++.....+.+..-. .-..+.-+++||
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp 367 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSP 367 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCc
Confidence 9988877 44332 2 122233233344444433345567777888888888765554433222 223567788999
Q ss_pred CCCEEEEEeCCCeEEEEcCCCCee
Q 022910 202 DGKTICTGSDDATLRVWNPKSGEN 225 (290)
Q Consensus 202 ~~~~l~~~~~dg~i~i~d~~~~~~ 225 (290)
.+.++++- ..|.|+++-+.+..+
T Consensus 368 ~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 368 NQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred ccchheee-cCCceEEEEecCCCC
Confidence 99988875 457799998876544
No 495
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.81 E-value=12 Score=35.40 Aligned_cols=158 Identities=13% Similarity=0.098 Sum_probs=92.6
Q ss_pred cccCCEEEEEEC---C----CCCEEEEEeCCCcEEEEcCC------CC---------ceEEEEec---CCCCEEEEEEcC
Q 022910 105 GHKDSVSSLAFS---M----DGQLLASGGLDGLVQIWDPS------SG---------NLKCTLEG---PGGGVEWVSWHP 159 (290)
Q Consensus 105 ~~~~~i~~~~~~---~----~~~~l~~~~~dg~i~i~d~~------~~---------~~~~~~~~---~~~~i~~i~~~~ 159 (290)
....+|..|+|. . ..++|++-. ...+.|+... .. .++..+.. .+.+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 356789999997 2 223555544 4567777621 11 22333331 334678899998
Q ss_pred -CCCEEEEeeCCCeEEEEECCccc-----EEEeeecC----------CCCeEEEEEcCCCCEEEEEeCCCeEEEEcCCCC
Q 022910 160 -RGHIVLAGSEDSTVWMWNADRAA-----YLNMFSGH----------GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223 (290)
Q Consensus 160 -~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 223 (290)
+...||+....|...||++.... ........ ...-..+.|.++...|++++. ..+.++|+.+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 45699999999999999992211 11111111 123347889888778888764 56889999877
Q ss_pred eeeEEEeCCCCcccCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCC
Q 022910 224 ENIHVIRGHPYHTEGLTCLTISAD--STLALSGSKDGSVHMVNITT 267 (290)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~ 267 (290)
.....+... .....|..+.-+|. ...++.. ...|...++..
T Consensus 235 ~~~~~l~~~-~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTA-KTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred CccchhccC-CChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 653322221 14456777777765 2222222 23566666654
No 496
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.71 E-value=1.2 Score=23.87 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=24.5
Q ss_pred CCCCcEEEEecCCCcEEEEEccCCeeeeeecc
Q 022910 74 PTDATLVATGGGDDKGFFWRINQGDWASEIQG 105 (290)
Q Consensus 74 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 105 (290)
|+++.++++...++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 33556676777789999999998888777764
No 497
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.29 E-value=8.3 Score=32.69 Aligned_cols=195 Identities=10% Similarity=0.137 Sum_probs=108.7
Q ss_pred CCcEEEEecCCCcEEEEEccCCeeeeeeccccCCEEEEEEC----CCCCE--EEEEe-CC---CcEEEEcCCCC-ceEEE
Q 022910 76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS----MDGQL--LASGG-LD---GLVQIWDPSSG-NLKCT 144 (290)
Q Consensus 76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~--l~~~~-~d---g~i~i~d~~~~-~~~~~ 144 (290)
...+++...+.+-+.+||+... .+..+. .+.+..+..- -.++. |+.++ .+ .+|++|.+... ..+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk-~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGK-ELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCCCc-EEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 4457777788899999999754 444443 2233333321 13442 44444 22 46999977532 22333
Q ss_pred Eec-------CCCCEEEEEEc--C-CCC-EEEEeeCCCeEEEEECC---cc----cEEEeeecCCCCeEEEEEcCCCCEE
Q 022910 145 LEG-------PGGGVEWVSWH--P-RGH-IVLAGSEDSTVWMWNAD---RA----AYLNMFSGHGSSVTCGDFTPDGKTI 206 (290)
Q Consensus 145 ~~~-------~~~~i~~i~~~--~-~~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~i~~~~~~~~~~~l 206 (290)
+.. ....+..+|+. + ++. ++++...+|.+..|-+. .+ +.++.+.. .+.+..+.......+|
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRL 222 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCE
Confidence 221 11235666663 3 344 66677888988888774 22 45677764 4588999999888899
Q ss_pred EEEeCCCeEEEEcCCCC--eeeEEE--eCCCCcccCeEEEEEcC--CC-CEEEEE-eCCCcEEEEEcCC-CcEEEEE
Q 022910 207 CTGSDDATLRVWNPKSG--ENIHVI--RGHPYHTEGLTCLTISA--DS-TLALSG-SKDGSVHMVNITT-GKVVSSL 274 (290)
Q Consensus 207 ~~~~~dg~i~i~d~~~~--~~~~~~--~~~~~~~~~v~~~~~~~--~~-~~l~~~-~~dg~i~~wd~~~-~~~~~~~ 274 (290)
+.+-.+.-|.-|+.... .....+ .........+-.|++-. ++ .||+++ -.+++..+|+... ...+..|
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 99999988888887522 211222 11112345677777643 33 345444 4477899999765 3445554
No 498
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.10 E-value=8.2 Score=32.31 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=26.8
Q ss_pred CCCEEEEEeCC-----------CcEEEEcCCCCceEEEEecCCCCEEE--EEEcCCCCEEEEeeCC
Q 022910 118 DGQLLASGGLD-----------GLVQIWDPSSGNLKCTLEGPGGGVEW--VSWHPRGHIVLAGSED 170 (290)
Q Consensus 118 ~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~i~~--i~~~~~~~~l~~~~~d 170 (290)
+++..+.|+.. ..+..||..+.+-...-......... ....-++++.+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56667777653 24777888776543321111111111 1112367777887754
No 499
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=90.98 E-value=6.8 Score=31.15 Aligned_cols=69 Identities=9% Similarity=0.104 Sum_probs=47.2
Q ss_pred CCEEEEEEcCC-------CCEEEEeeCCCeEEEEECCcccEEEeeecCCCCeEEEE---EcCCCCEEEEEeCCCeEEEE
Q 022910 150 GGVEWVSWHPR-------GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD---FTPDGKTICTGSDDATLRVW 218 (290)
Q Consensus 150 ~~i~~i~~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~---~~~~~~~l~~~~~dg~i~i~ 218 (290)
..|+||+--+. -..|+.|+.+|.|+|.|......+.++.-..-++.-.+ |..-.-.|++++.||.|++.
T Consensus 177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 46788765431 23799999999999999998888877775555542222 21123457788899988764
No 500
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=90.87 E-value=7.5 Score=36.42 Aligned_cols=138 Identities=15% Similarity=0.196 Sum_probs=77.4
Q ss_pred cCCCcEEEEEccCCeeeeeeccccCCEEEEEE-CCCCC-------EEEEEeCCCcEEEEcC----CCCceE-----EEEe
Q 022910 84 GGDDKGFFWRINQGDWASEIQGHKDSVSSLAF-SMDGQ-------LLASGGLDGLVQIWDP----SSGNLK-----CTLE 146 (290)
Q Consensus 84 ~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~-~~~~~-------~l~~~~~dg~i~i~d~----~~~~~~-----~~~~ 146 (290)
+.|..+.+|++.++..-..+......|..++. -|..+ +++..+....+.++-+ .+++.- ....
T Consensus 99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T~Els~fnTgl~vs 178 (1263)
T COG5308 99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKTGELSLFNTGLVVS 178 (1263)
T ss_pred EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEeccccceeEEEecceEEe
Confidence 35688999999976655544444444554443 23222 1111222333444432 222221 1122
Q ss_pred cCCCCEEEEEEcCCCCEEEEeeCCCeEEEEECCcc--------cE-------------E---EeeecCCCCeEEEEEcCC
Q 022910 147 GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA--------AY-------------L---NMFSGHGSSVTCGDFTPD 202 (290)
Q Consensus 147 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~i~d~~~~--------~~-------------~---~~~~~~~~~i~~~~~~~~ 202 (290)
..+-.|.|+.-+.+|+.+++|-.| +.+|.+.-. ++ + ..+..++..|..++....
T Consensus 179 vqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDqs 256 (1263)
T COG5308 179 VQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQS 256 (1263)
T ss_pred ccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeeccc
Confidence 234568898888889988888877 566654211 00 0 111235567778888776
Q ss_pred CCEEEEEeCCCeEEEEcCCCC
Q 022910 203 GKTICTGSDDATLRVWNPKSG 223 (290)
Q Consensus 203 ~~~l~~~~~dg~i~i~d~~~~ 223 (290)
...|.+-+....|+-|-+...
T Consensus 257 Rg~ly~Lr~kS~Vray~itkn 277 (1263)
T COG5308 257 RGLLYVLRKKSAVRAYSITKN 277 (1263)
T ss_pred ccceeeecccceeeeEeeecc
Confidence 677777777777888766543
Done!