Your job contains 1 sequence.
>022911
MAVEATSSFLSCSSKTHFLFNLRASSSPSSWKKFTQSANFAAKNRHVCRNERPNVSCSAA
AFAVQETLEKTRESVMASSAKEMMPKIDKSGRLVVYAACLEGSDPIRLFEKRLNSRREPG
YEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLL
RFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVVGTRHQIV
INEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEVPSEV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022911
(290 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2131428 - symbol:AT4G26370 species:3702 "Arabi... 818 1.5e-81 1
UNIPROTKB|P65582 - symbol:nusB "N utilization substance p... 104 3.1e-05 1
UNIPROTKB|Q9KPU5 - symbol:nusB "N utilization substance p... 109 7.1e-05 1
TIGR_CMR|VC_2267 - symbol:VC_2267 "N utilization substanc... 109 7.1e-05 1
TIGR_CMR|CJE_0431 - symbol:CJE_0431 "transcription antite... 97 0.00018 1
>TAIR|locus:2131428 [details] [associations]
symbol:AT4G26370 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009073 "aromatic amino acid
family biosynthetic process" evidence=RCA] [GO:0010103 "stomatal
complex morphogenesis" evidence=RCA] [GO:0016226 "iron-sulfur
cluster assembly" evidence=RCA] [GO:0042793 "transcription from
plastid promoter" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR006027
Pfam:PF01029 GO:GO:0009507 EMBL:CP002687 GO:GO:0006355
GO:GO:0003723 Gene3D:1.10.940.10 SUPFAM:SSF48013 EMBL:AY054564
EMBL:BT008707 IPI:IPI00535428 RefSeq:NP_567745.1 UniGene:At.2177
ProteinModelPortal:Q93XY7 SMR:Q93XY7 STRING:Q93XY7 PRIDE:Q93XY7
EnsemblPlants:AT4G26370.1 GeneID:828743 KEGG:ath:AT4G26370
TAIR:At4g26370 HOGENOM:HOG000240288 InParanoid:Q93XY7 OMA:PPKLVYS
PhylomeDB:Q93XY7 ProtClustDB:CLSN2689621 Genevestigator:Q93XY7
Uniprot:Q93XY7
Length = 301
Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
Identities = 177/300 (59%), Positives = 211/300 (70%)
Query: 3 VEATSSFLSCSSKTHFLFNLRASSSPSSWKK--FTQSANFAAKNRHVCRNERPNVSCSAA 60
+E T S L S ++ + ++ SP S + FT + N R S S+
Sbjct: 1 MEGTFSPLCLRSSSNLCY-FSSNVSPDSHRSIGFTLVDSLRPTNLVSLRTGNKRSSSSSL 59
Query: 61 AFAVQETLEKTRE-SVMASSAKEM-MPKIDKSGRL------------VVYAACLEGSDPI 106
+ T R ++ A K++ MPKIDKSGRL ++YAACLEGSDPI
Sbjct: 60 RLFLSPTRSALRTPTISAEEVKDVPMPKIDKSGRLSSPRAARELALVILYAACLEGSDPI 119
Query: 107 RLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAEV 166
RLFEKR+N+RREPGYEFDKSSLLEYNHMSFGGPPV TET EE DEL+R DE+ES IEAEV
Sbjct: 120 RLFEKRINARREPGYEFDKSSLLEYNHMSFGGPPVKTETKEEEDELVRHDEKESKIEAEV 179
Query: 167 LSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLA 226
LSAPPKLVYSKL+LRF +KLL AVVDKWD+HV II+K+ PP WK PAGRILE SILHLA
Sbjct: 180 LSAPPKLVYSKLVLRFAKKLLAAVVDKWDSHVVIIEKISPPDWKSAPAGRILEFSILHLA 239
Query: 227 MSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEV 286
MSE+ V+ TRH IVINEAVDLAKRFCDG+APRIINGCLRTFV++ T+ +A + +EV
Sbjct: 240 MSEVAVLETRHPIVINEAVDLAKRFCDGSAPRIINGCLRTFVKDRATTSTPQALELKQEV 299
>UNIPROTKB|P65582 [details] [associations]
symbol:nusB "N utilization substance protein B homolog"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00073 InterPro:IPR006027
InterPro:IPR011605 Pfam:PF01029 GO:GO:0006355 GO:GO:0003723
EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0006353
eggNOG:COG0781 HOGENOM:HOG000281867 KO:K03625 ProtClustDB:PRK00202
Gene3D:1.10.940.10 PANTHER:PTHR11078 SUPFAM:SSF48013
TIGRFAMs:TIGR01951 PIR:B95050 RefSeq:NP_344955.1
ProteinModelPortal:P65582 EnsemblBacteria:EBSTRT00000026414
GeneID:930369 KEGG:spn:SP_0433 PATRIC:19705211 OMA:TGVKDHE
Uniprot:P65582
Length = 140
Score = 104 (41.7 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 217 ILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 268
++E ++L L + EIT T + +NEA++LAK F D + R ING L FV
Sbjct: 85 LVERNLLRLGVFEITSFDTPQLVAVNEAIELAKDFSDQKSARFINGLLSQFV 136
>UNIPROTKB|Q9KPU5 [details] [associations]
symbol:nusB "N utilization substance protein B homolog"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0006353 "DNA-dependent transcription, termination"
evidence=ISS] HAMAP:MF_00073 InterPro:IPR006027 InterPro:IPR011605
Pfam:PF01029 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0006353 eggNOG:COG0781 KO:K03625
ProtClustDB:PRK00202 Gene3D:1.10.940.10 PANTHER:PTHR11078
SUPFAM:SSF48013 TIGRFAMs:TIGR01951 OMA:IPYKVVI PIR:B82098
RefSeq:NP_231898.1 ProteinModelPortal:Q9KPU5 SMR:Q9KPU5
DNASU:2613189 GeneID:2613189 KEGG:vch:VC2267 PATRIC:20083575
Uniprot:Q9KPU5
Length = 156
Score = 109 (43.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 39/126 (30%), Positives = 64/126 (50%)
Query: 141 VTTETVEEADE-LLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVH 199
+T E V +E L S + + E E +A P L + + + R LL VV H
Sbjct: 26 ITKENVATIEEQFLTSGKYD---EEEHRAAEPALAAPETDVSYFRDLLAGVVLN---HNE 79
Query: 200 IIDKVVPPIWKDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGAAPR 258
+ K+ P + + ++EL++L LAM E+T +++VINEA++LAK F + +
Sbjct: 80 LDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHK 139
Query: 259 IINGCL 264
+NG L
Sbjct: 140 FVNGVL 145
>TIGR_CMR|VC_2267 [details] [associations]
symbol:VC_2267 "N utilization substance protein B"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006353
"DNA-dependent transcription, termination" evidence=ISS]
HAMAP:MF_00073 InterPro:IPR006027 InterPro:IPR011605 Pfam:PF01029
GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0006353 eggNOG:COG0781 KO:K03625 ProtClustDB:PRK00202
Gene3D:1.10.940.10 PANTHER:PTHR11078 SUPFAM:SSF48013
TIGRFAMs:TIGR01951 OMA:IPYKVVI PIR:B82098 RefSeq:NP_231898.1
ProteinModelPortal:Q9KPU5 SMR:Q9KPU5 DNASU:2613189 GeneID:2613189
KEGG:vch:VC2267 PATRIC:20083575 Uniprot:Q9KPU5
Length = 156
Score = 109 (43.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 39/126 (30%), Positives = 64/126 (50%)
Query: 141 VTTETVEEADE-LLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVH 199
+T E V +E L S + + E E +A P L + + + R LL VV H
Sbjct: 26 ITKENVATIEEQFLTSGKYD---EEEHRAAEPALAAPETDVSYFRDLLAGVVLN---HNE 79
Query: 200 IIDKVVPPIWKDQPAGRILELSILHLAMSEITV-VGTRHQIVINEAVDLAKRFCDGAAPR 258
+ K+ P + + ++EL++L LAM E+T +++VINEA++LAK F + +
Sbjct: 80 LDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHK 139
Query: 259 IINGCL 264
+NG L
Sbjct: 140 FVNGVL 145
>TIGR_CMR|CJE_0431 [details] [associations]
symbol:CJE_0431 "transcription antitermination factor
NusB" species:195099 "Campylobacter jejuni RM1221" [GO:0006353
"DNA-dependent transcription, termination" evidence=ISS]
HAMAP:MF_00073 InterPro:IPR006027 InterPro:IPR011605 Pfam:PF01029
GO:GO:0006355 GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0006353 eggNOG:COG0781 HOGENOM:HOG000281867 KO:K03625
ProtClustDB:PRK00202 Gene3D:1.10.940.10 PANTHER:PTHR11078
SUPFAM:SSF48013 TIGRFAMs:TIGR01951 RefSeq:YP_178450.1
ProteinModelPortal:Q5HW85 STRING:Q5HW85 PRIDE:Q5HW85 GeneID:3231193
KEGG:cjr:CJE0431 PATRIC:20042562 OMA:QMPGVDK
BioCyc:CJEJ195099:GJC0-436-MONOMER Uniprot:Q5HW85
Length = 132
Score = 97 (39.2 bits), Expect = 0.00018, P = 0.00018
Identities = 27/90 (30%), Positives = 45/90 (50%)
Query: 182 FTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRI--LELSILHLAMSEITVVGTRHQI 239
FT L ++D +++ ID+ + D + +E +IL L E+ T I
Sbjct: 44 FTLNLYNGILD----NLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAI 99
Query: 240 VINEAVDLAKRFCDGAAPRIINGCLRTFVR 269
VINEA++LAK + +P+ ING L ++
Sbjct: 100 VINEAIELAKELANDNSPKFINGVLDALIK 129
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.129 0.369 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 290 290 0.00089 115 3 11 22 0.39 34
33 0.43 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 618 (66 KB)
Total size of DFA: 200 KB (2113 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.59u 0.10s 24.69t Elapsed: 00:00:02
Total cpu time: 24.59u 0.10s 24.69t Elapsed: 00:00:02
Start: Sat May 11 02:03:38 2013 End: Sat May 11 02:03:40 2013