Query 022911
Match_columns 290
No_of_seqs 187 out of 1431
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 13:11:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzv_A NUSB protein, N utiliza 100.0 3E-31 1E-35 223.1 10.9 131 143-275 6-138 (142)
2 3d3b_A Protein NUSB, N utiliza 100.0 1.6E-30 5.5E-35 218.5 10.1 126 143-274 9-139 (141)
3 3r2d_A Protein NUSB, N utiliza 100.0 8E-31 2.7E-35 223.0 8.3 133 143-277 6-141 (149)
4 1eyv_A NUSB protein, N-utilizi 100.0 3.3E-29 1.1E-33 214.6 7.3 129 143-273 11-144 (156)
5 1sqg_A SUN protein, FMU protei 99.9 1.2E-21 4.1E-26 189.1 10.9 125 144-272 6-130 (429)
6 2yxl_A PH0851 protein, 450AA l 99.8 1E-20 3.5E-25 184.0 6.8 124 144-271 12-141 (450)
7 2zc2_A DNAD-like replication p 24.6 47 0.0016 23.7 2.7 32 238-270 37-68 (78)
8 1q8c_A Hypothetical protein Mg 22.6 30 0.001 28.1 1.3 55 212-267 96-150 (151)
9 1v54_E Cytochrome C oxidase po 20.0 48 0.0016 26.5 1.9 48 219-266 25-74 (109)
10 2i5u_A DNAD domain protein; st 16.9 76 0.0026 23.2 2.4 32 238-270 42-73 (83)
No 1
>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A*
Probab=99.97 E-value=3e-31 Score=223.08 Aligned_cols=131 Identities=16% Similarity=0.222 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhhhhcch-hHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCCCCCcChHHHHH
Q 022911 143 TETVEEADELLRSDEEESA-IEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELS 221 (290)
Q Consensus 143 ~~aRe~AlqlL~~ve~~~~-l~~~lL~~~~~~~l~~~Dr~fa~~Lv~Gvlr~~~~lD~iI~~~l~k~w~lerl~~vLdra 221 (290)
..+|+.|+++|++++.++. ....++.......+++.|++|+++|++||+++++.||++|++++ ++|++++++++ +++
T Consensus 6 ~~aR~~A~~~L~~~~~~~~~~~~~~l~~~~~~~l~~~d~~~~~~Lv~gvl~~~~~lD~~I~~~l-~~w~l~rl~~~-~r~ 83 (142)
T 1tzv_A 6 RRMRLAVFKALFQHEFRRDEDLEQILEEILDETYDKKAKEDARRYIRGIKENLSMIDDLISRYL-EKWSLNRLSVV-DRN 83 (142)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCHHHHHHHHCCTTSCHHHHHHHHHHHHHHHHTHHHHHHHHHTTC-SSSCGGGSCHH-HHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCChHHCCHH-HHH
Confidence 3689999999999987655 33333221100237889999999999999999999999999999 57999999998 799
Q ss_pred HHHHHHHHhhcc-CCChhhHHHHHHHHHHhhCCCCCCCchHHHHhhHHhhhhccc
Q 022911 222 ILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTA 275 (290)
Q Consensus 222 ILRlAiyELlf~-diP~~vaINEAVeLAK~y~~~~s~~FVNaVLr~i~r~~~~~~ 275 (290)
|||+|+|||+|. ++|++|+|||||++||+|+++++++|||||||++.++.+..+
T Consensus 84 iLrla~yEl~~~~~iP~~vaInEaVelaK~~~~~~~~~fVNgVL~~i~r~~~~~~ 138 (142)
T 1tzv_A 84 VLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIAKEHAPKE 138 (142)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHhcccc
Confidence 999999999996 699999999999999999999999999999999999876543
No 2
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A
Probab=99.97 E-value=1.6e-30 Score=218.46 Aligned_cols=126 Identities=21% Similarity=0.250 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhhhhcch-hHH---HHhcCCCCCCCCHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCCCCCcChHH
Q 022911 143 TETVEEADELLRSDEEESA-IEA---EVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRIL 218 (290)
Q Consensus 143 ~~aRe~AlqlL~~ve~~~~-l~~---~lL~~~~~~~l~~~Dr~fa~~Lv~Gvlr~~~~lD~iI~~~l~k~w~lerl~~vL 218 (290)
..+|+.|+++|++++.++. ... .++... .+++.|++|+++|++||+++++.||++|++++ + |++++++++
T Consensus 9 ~~aR~~A~~~L~~~~~~~~~~~~~~~~~~~~~---~l~~~d~~~~~~Lv~gvl~~~~~lD~~I~~~l-~-~~l~rl~~~- 82 (141)
T 3d3b_A 9 RRARECAVQALYSWQLSQNDIADVEYQFLAEQ---DVKDVDVLYFRELLAGVATNTAYLDGLMKPYL-S-RLLEELGQV- 82 (141)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHS---CCTTSCHHHHHHHHHHHHHTHHHHHHHHGGGG-T-TCSSCCCHH-
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHc-C-CCHHHcCHH-
Confidence 3689999999999976543 222 222211 25678999999999999999999999999999 4 999999998
Q ss_pred HHHHHHHHHHHhhcc-CCChhhHHHHHHHHHHhhCCCCCCCchHHHHhhHHhhhhcc
Q 022911 219 ELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGT 274 (290)
Q Consensus 219 draILRlAiyELlf~-diP~~vaINEAVeLAK~y~~~~s~~FVNaVLr~i~r~~~~~ 274 (290)
+++|||+|+|||+|+ ++|++|+|||||++||+|+++++++|||||||+++++++..
T Consensus 83 ~r~iLrla~yEll~~~~iP~~vaInEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~~ 139 (141)
T 3d3b_A 83 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 139 (141)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhhc
Confidence 799999999999996 79999999999999999999999999999999999987654
No 3
>3r2d_A Protein NUSB, N utilization substance protein B; cross species NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB: 2jr0_A 3r2c_A* 4eya_A
Probab=99.96 E-value=8e-31 Score=223.03 Aligned_cols=133 Identities=20% Similarity=0.253 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHhhhhcchhHHHHhcCCC-CCC-CCHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCCCCCcChHHHH
Q 022911 143 TETVEEADELLRSDEEESAIEAEVLSAPP-KLV-YSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILEL 220 (290)
Q Consensus 143 ~~aRe~AlqlL~~ve~~~~l~~~lL~~~~-~~~-l~~~Dr~fa~~Lv~Gvlr~~~~lD~iI~~~l~k~w~lerl~~vLdr 220 (290)
..+|+.|+++|++++.++.....++.... ... +++.|++|+++|++||+++++.||++|++++ ++|+++|++++ ++
T Consensus 6 ~~aR~~A~q~L~~~~~~~~~~~~~l~~~~~~~~~~~~~dr~~~~~lv~gvl~~~~~lD~~i~~~l-~~w~~~rl~~~-~r 83 (149)
T 3r2d_A 6 KGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHL-KGWSIDRLGYV-ER 83 (149)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTHHHHHHHHHTTC----CGGGSCHH-HH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-cCCCccccCHH-HH
Confidence 36999999999999876543332322110 012 6789999999999999999999999999999 68999999998 79
Q ss_pred HHHHHHHHHhhcc-CCChhhHHHHHHHHHHhhCCCCCCCchHHHHhhHHhhhhccccc
Q 022911 221 SILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANI 277 (290)
Q Consensus 221 aILRlAiyELlf~-diP~~vaINEAVeLAK~y~~~~s~~FVNaVLr~i~r~~~~~~~~ 277 (290)
+|||+|+|||+|. ++|++|+|||||++||+|+++++++|||||||++.++....+.+
T Consensus 84 ~iLrla~yEl~~~~~iP~~vaInEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~~~~~ 141 (149)
T 3r2d_A 84 NALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAYITSSKE 141 (149)
T ss_dssp HHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHcCCCCCeehHHHHHHHHHHhCCCCccccchHHhhHHHHhhcccccc
Confidence 9999999999997 79999999999999999999999999999999999988776654
No 4
>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1
Probab=99.95 E-value=3.3e-29 Score=214.56 Aligned_cols=129 Identities=20% Similarity=0.228 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHhhhhcchhHHHHhcCCCC----CCCCHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCCCCCcChHH
Q 022911 143 TETVEEADELLRSDEEESAIEAEVLSAPPK----LVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRIL 218 (290)
Q Consensus 143 ~~aRe~AlqlL~~ve~~~~l~~~lL~~~~~----~~l~~~Dr~fa~~Lv~Gvlr~~~~lD~iI~~~l~k~w~lerl~~vL 218 (290)
..+|+.|+++|++++.++.....++..... ....+.+++|+++|++||+++++.||++|++++ ++|++++++++
T Consensus 11 ~~aR~~Alq~L~~~~~~~~~~~~~l~~~~~l~~~d~~~~~~~~~~~~lv~gvl~~~~~lD~~i~~~l-~~w~l~rl~~~- 88 (156)
T 1eyv_A 11 HQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAV- 88 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHTHHHHHHHHHTTS-TTCCGGGSCHH-
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-cCCChhhCCHH-
Confidence 469999999999998665322222111000 001123489999999999999999999999999 68999999998
Q ss_pred HHHHHHHHHHHhhcc-CCChhhHHHHHHHHHHhhCCCCCCCchHHHHhhHHhhhhc
Q 022911 219 ELSILHLAMSEITVV-GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEG 273 (290)
Q Consensus 219 draILRlAiyELlf~-diP~~vaINEAVeLAK~y~~~~s~~FVNaVLr~i~r~~~~ 273 (290)
+++|||+|+|||+|+ ++|++++|||||++||+|+++++++|||||||++.+....
T Consensus 89 ~r~iLrla~yel~~~~~iP~~v~InEaVelak~~~~~~~~~fVNgVLr~i~r~~~~ 144 (156)
T 1eyv_A 89 DRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQVMLVTPQ 144 (156)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhCCCccccchHHHHHHHHHhHHh
Confidence 799999999999996 6999999999999999999999999999999999876533
No 5
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=99.85 E-value=1.2e-21 Score=189.09 Aligned_cols=125 Identities=16% Similarity=0.143 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhhhhcchhHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCCCCCcChHHHHHHH
Q 022911 144 ETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSIL 223 (290)
Q Consensus 144 ~aRe~AlqlL~~ve~~~~l~~~lL~~~~~~~l~~~Dr~fa~~Lv~Gvlr~~~~lD~iI~~~l~k~w~lerl~~vLdraIL 223 (290)
.+|+.|+++|++++.++.....++... ...+++.|++|+++||+||++++..||++|+++++ + ++++++++ +++||
T Consensus 6 ~aR~~A~~~L~~~~~~~~~~~~~l~~~-~~~~~~~dr~~~~~lv~gvlr~~~~ld~~i~~~~~-~-~~~~~~~~-~~~iL 81 (429)
T 1sqg_A 6 NLRSMAAQAVEQVVEQGQSLSNILPPL-QQKVSDKDKALLQELCFGVLRTLSQLDWLINKLMA-R-PMTGKQRT-VHYLI 81 (429)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHHHHHH-HTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-S-CCCGGGHH-HHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC-C-ChhhcCHH-HHHHH
Confidence 489999999999987653322222211 01378899999999999999999999999999984 4 78899998 79999
Q ss_pred HHHHHHhhccCCChhhHHHHHHHHHHhhCCCCCCCchHHHHhhHHhhhh
Q 022911 224 HLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLE 272 (290)
Q Consensus 224 RlAiyELlf~diP~~vaINEAVeLAK~y~~~~s~~FVNaVLr~i~r~~~ 272 (290)
|+|+|||+|.++|++++|||+|++||+|+++++++|||||||++.+...
T Consensus 82 rl~~yel~~~~~p~~~~ineaVelak~~~~~~~~~fvN~vL~~~~r~~~ 130 (429)
T 1sqg_A 82 MVGLYQLLYTRIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQE 130 (429)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCchHhhHHHHHHHHHhccccchhhHHHHHHHHHHhhh
Confidence 9999999999999999999999999999988899999999999998653
No 6
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=99.81 E-value=1e-20 Score=184.00 Aligned_cols=124 Identities=11% Similarity=-0.061 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhhhhcchhHHHHhcCCC-CCCCCH-HHHHHHHHHHHHHHHcHHHHHHHHHhhCCCCCCCCCcChHHHHH
Q 022911 144 ETVEEADELLRSDEEESAIEAEVLSAPP-KLVYSK-LLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELS 221 (290)
Q Consensus 144 ~aRe~AlqlL~~ve~~~~l~~~lL~~~~-~~~l~~-~Dr~fa~~Lv~Gvlr~~~~lD~iI~~~l~k~w~lerl~~vLdra 221 (290)
.+|+.|+++|++++.++.....++.... ...+++ .|++|+++||+||++++..||++|+++++ + ++++++++ +++
T Consensus 12 ~~R~~A~~~L~~v~~~~~~~~~~l~~~~~~~~l~~~~dr~~~~~lv~gvlr~~~~ld~~i~~~~~-~-~~~~~~~~-~~~ 88 (450)
T 2yxl_A 12 PKGIRAIIEAIRLGEIIKPSQYAKREAFKKHDVEEAWLNRVLTMIFYDIMKKQGLIDKVIKEIVG-V-TPLILDPW-LRA 88 (450)
T ss_dssp HHHHHHHHHHHHHTTTSSSTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-S-CGGGSCHH-HHH
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc-C-ChhhcCHH-HHH
Confidence 6899999999999866543222221100 012566 89999999999999999999999999984 3 78899998 799
Q ss_pred HHHHHHHHhhccCCChhhHHH----HHHHHHHhhCCCCCCCchHHHHhhHHhhh
Q 022911 222 ILHLAMSEITVVGTRHQIVIN----EAVDLAKRFCDGAAPRIINGCLRTFVRNL 271 (290)
Q Consensus 222 ILRlAiyELlf~diP~~vaIN----EAVeLAK~y~~~~s~~FVNaVLr~i~r~~ 271 (290)
|||+|+|||+| ++|++++|| |||++||+|+++++++|||||||++.+..
T Consensus 89 iLrla~yell~-~ip~~~ain~~~~eaVelak~~~~~~~~~fvNgvL~~~~r~~ 141 (450)
T 2yxl_A 89 ALRVAVDIALF-HDPSSQTIKNLRWKASDFISSRTHPYVGMYFWDLLDKIFEYK 141 (450)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhc-CCCchHHhccccHHHHHHHHhccccccccchHHHHHHHhhcc
Confidence 99999999999 999999999 99999999998889999999999999863
No 7
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=24.59 E-value=47 Score=23.75 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHhhCCCCCCCchHHHHhhHHhh
Q 022911 238 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 270 (290)
Q Consensus 238 ~vaINEAVeLAK~y~~~~s~~FVNaVLr~i~r~ 270 (290)
.-+|++|++.|-.- +..+.++|++||.+=.++
T Consensus 37 ~elI~~A~~~a~~~-~~~s~~Yi~~Il~~W~~~ 68 (78)
T 2zc2_A 37 PDLVRSALREAVFN-GKTNWNYIQAILRNWRHE 68 (78)
T ss_dssp HHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHc
Confidence 56888898888643 455779999999887654
No 8
>1q8c_A Hypothetical protein Mg027; structural genomics, NUSB, GI 3 BSGC structure funded by NIH, protein structure initiative; 2.00A {Mycoplasma genitalium} SCOP: a.79.1.2
Probab=22.64 E-value=30 Score=28.11 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=44.1
Q ss_pred CCcChHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHhhCCCCCCCchHHHHhhH
Q 022911 212 QPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTF 267 (290)
Q Consensus 212 erl~~vLdraILRlAiyELlf~diP~~vaINEAVeLAK~y~~~~s~~FVNaVLr~i 267 (290)
++++.. -.++..+|+.|-.-..+.....|.||.-+-..|+.....+=-+|+||++
T Consensus 96 kkidll-t~avilcalseq~a~~tdkplliseallimdhysq~~ekkqthalldkl 150 (151)
T 1q8c_A 96 KKIDLL-TTAVVLCALSEQKAHNTDKPLLISEALLIMDHYSQGAEKKQTHALLDKL 150 (151)
T ss_dssp --CCHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCCCTTSCSCTTTSCC
T ss_pred chhhHH-HHHHHHHHhhHHHhhcCCCchhHHHHHHHHHHhhhchhHHHHHHHHHhh
Confidence 345565 5888999999987778889999999999999999777777778887764
No 9
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=19.99 E-value=48 Score=26.49 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhccC-CChhhHHHHHHHHHHhhCC-CCCCCchHHHHhh
Q 022911 219 ELSILHLAMSEITVVG-TRHQIVINEAVDLAKRFCD-GAAPRIINGCLRT 266 (290)
Q Consensus 219 draILRlAiyELlf~d-iP~~vaINEAVeLAK~y~~-~~s~~FVNaVLr~ 266 (290)
|..-+|-|+-.+.-.| +|...||.-|+..|++..+ .-+.+|.-||=.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6677899999988666 9999999999999988753 2234455554433
No 10
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=16.93 E-value=76 Score=23.20 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHhhCCCCCCCchHHHHhhHHhh
Q 022911 238 QIVINEAVDLAKRFCDGAAPRIINGCLRTFVRN 270 (290)
Q Consensus 238 ~vaINEAVeLAK~y~~~~s~~FVNaVLr~i~r~ 270 (290)
.-+|-+|++.|..-+ ..+-++|++||.+=.++
T Consensus 42 ~elI~~A~~~av~~~-~~~~~Yi~~IL~~W~~~ 73 (83)
T 2i5u_A 42 EQLIVKAIEIAIDAN-ARNYNYINAILKDWEQR 73 (83)
T ss_dssp HHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 456777777776653 45678999999887643
Done!